Query 012112
Match_columns 471
No_of_seqs 377 out of 2826
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 03:00:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1olt_A Oxygen-independent copr 100.0 8E-74 2.7E-78 602.5 35.8 381 50-469 49-444 (457)
2 1r30_A Biotin synthase; SAM ra 100.0 3.7E-31 1.3E-35 270.6 17.1 259 55-359 68-336 (369)
3 2qgq_A Protein TM_1862; alpha- 100.0 2.2E-28 7.4E-33 243.7 16.8 212 52-288 2-224 (304)
4 3t7v_A Methylornithine synthas 99.9 2.7E-24 9.3E-29 218.1 14.7 211 52-291 57-272 (350)
5 3iix_A Biotin synthetase, puta 99.9 5.4E-23 1.9E-27 208.0 17.2 202 61-290 61-262 (348)
6 3c8f_A Pyruvate formate-lyase 99.8 1.3E-17 4.5E-22 159.0 17.1 216 54-295 20-243 (245)
7 2yx0_A Radical SAM enzyme; pre 99.7 8.9E-16 3E-20 154.8 16.7 214 62-298 80-311 (342)
8 1tv8_A MOAA, molybdenum cofact 99.6 1.6E-14 5.6E-19 145.4 18.3 189 55-261 15-205 (340)
9 2z2u_A UPF0026 protein MJ0257; 99.3 1.7E-11 5.9E-16 121.6 12.2 221 52-295 49-288 (311)
10 2a5h_A L-lysine 2,3-aminomutas 99.2 1.6E-10 5.5E-15 119.4 15.9 177 56-261 117-301 (416)
11 3rfa_A Ribosomal RNA large sub 98.8 4.3E-08 1.5E-12 100.2 15.9 206 63-295 125-341 (404)
12 3can_A Pyruvate-formate lyase- 98.6 1.2E-06 4.2E-11 79.4 17.0 167 116-295 5-178 (182)
13 4fhd_A Spore photoproduct lyas 97.4 0.00019 6.3E-09 72.2 7.0 160 63-241 117-282 (368)
14 1qwg_A PSL synthase;, (2R)-pho 95.6 0.11 3.9E-06 48.9 12.1 117 115-249 39-167 (251)
15 2cw6_A Hydroxymethylglutaryl-C 94.1 0.21 7.1E-06 48.6 9.8 89 162-251 82-177 (298)
16 2pg4_A Uncharacterized protein 93.0 0.24 8.1E-06 39.1 6.7 69 376-465 21-90 (95)
17 3n9k_A Glucan 1,3-beta-glucosi 92.1 0.6 2.1E-05 47.3 10.0 120 160-296 73-221 (399)
18 1ydn_A Hydroxymethylglutaryl-C 92.0 0.74 2.5E-05 44.5 10.2 98 148-251 71-176 (295)
19 3oop_A LIN2960 protein; protei 91.9 0.34 1.2E-05 40.8 6.9 78 365-465 35-112 (143)
20 3g3z_A NMB1585, transcriptiona 91.8 0.45 1.5E-05 40.1 7.5 78 365-465 29-106 (145)
21 2qvo_A Uncharacterized protein 91.6 0.4 1.4E-05 37.9 6.4 60 385-467 31-90 (95)
22 3k0l_A Repressor protein; heli 91.5 0.44 1.5E-05 41.2 7.3 78 365-465 44-121 (162)
23 3e6m_A MARR family transcripti 91.2 0.35 1.2E-05 41.8 6.3 72 374-465 57-128 (161)
24 3s2w_A Transcriptional regulat 91.1 0.46 1.6E-05 40.9 6.9 71 375-465 55-125 (159)
25 3hsr_A HTH-type transcriptiona 91.0 0.5 1.7E-05 39.7 7.0 78 365-465 34-111 (140)
26 3eco_A MEPR; mutlidrug efflux 90.9 0.54 1.8E-05 39.3 7.0 72 374-465 35-108 (139)
27 2ftp_A Hydroxymethylglutaryl-C 90.8 1 3.5E-05 43.7 9.8 99 148-251 75-180 (302)
28 3deu_A Transcriptional regulat 90.7 0.53 1.8E-05 41.1 7.0 78 365-465 51-129 (166)
29 3ech_A MEXR, multidrug resista 90.5 0.35 1.2E-05 40.7 5.5 78 365-465 35-112 (142)
30 4hbl_A Transcriptional regulat 90.3 0.48 1.6E-05 40.4 6.2 73 374-466 45-117 (149)
31 3bro_A Transcriptional regulat 90.2 0.98 3.4E-05 37.6 8.1 70 375-464 39-110 (141)
32 1jgs_A Multiple antibiotic res 90.2 0.86 2.9E-05 37.9 7.7 78 365-465 32-109 (138)
33 2frh_A SARA, staphylococcal ac 90.2 0.32 1.1E-05 40.6 4.9 80 365-467 35-116 (127)
34 2fbh_A Transcriptional regulat 89.8 1.3 4.5E-05 36.9 8.6 69 375-463 42-111 (146)
35 3nrv_A Putative transcriptiona 89.8 0.58 2E-05 39.6 6.3 78 364-464 37-114 (148)
36 2hr3_A Probable transcriptiona 89.8 0.99 3.4E-05 37.9 7.8 71 374-464 39-110 (147)
37 4aik_A Transcriptional regulat 89.7 1.3 4.5E-05 38.0 8.6 78 365-465 29-107 (151)
38 2gxg_A 146AA long hypothetical 89.7 1.2 4E-05 37.3 8.2 70 374-464 41-110 (146)
39 2xvc_A ESCRT-III, SSO0910; cel 89.6 0.72 2.5E-05 32.9 5.4 46 368-418 12-58 (59)
40 1tbx_A ORF F-93, hypothetical 89.5 0.84 2.9E-05 36.0 6.7 68 375-465 13-84 (99)
41 1u83_A Phosphosulfolactate syn 89.5 1.5 5.1E-05 41.7 9.3 113 115-248 66-190 (276)
42 1lj9_A Transcriptional regulat 89.2 0.93 3.2E-05 38.0 7.2 70 375-464 34-103 (144)
43 2rdp_A Putative transcriptiona 89.2 1 3.4E-05 38.1 7.4 71 374-464 46-116 (150)
44 3cdh_A Transcriptional regulat 89.1 1.1 3.8E-05 38.1 7.7 71 374-464 47-117 (155)
45 2yci_X 5-methyltetrahydrofolat 89.1 3.1 0.00011 39.7 11.5 119 115-242 48-192 (271)
46 1ydo_A HMG-COA lyase; TIM-barr 88.9 1 3.4E-05 44.0 8.0 98 148-251 73-178 (307)
47 3ble_A Citramalate synthase fr 88.9 2 6.7E-05 42.4 10.2 130 115-251 56-190 (337)
48 3kp7_A Transcriptional regulat 88.7 0.55 1.9E-05 40.0 5.4 73 374-465 42-114 (151)
49 3bj6_A Transcriptional regulat 88.6 1.2 4.1E-05 37.7 7.5 71 374-464 44-114 (152)
50 3nqo_A MARR-family transcripti 88.5 1.2 4E-05 39.8 7.7 78 365-465 39-118 (189)
51 1hjs_A Beta-1,4-galactanase; 4 88.4 3.5 0.00012 40.4 11.7 131 163-305 30-183 (332)
52 1fob_A Beta-1,4-galactanase; B 88.4 4.7 0.00016 39.5 12.6 130 162-305 29-184 (334)
53 1aj0_A DHPS, dihydropteroate s 88.2 3.1 0.00011 40.0 10.8 118 115-242 52-207 (282)
54 3hrs_A Metalloregulator SCAR; 88.1 2.3 7.8E-05 39.0 9.5 57 381-463 17-73 (214)
55 2eth_A Transcriptional regulat 88.0 1.4 4.8E-05 37.5 7.6 71 374-464 48-118 (154)
56 3bpv_A Transcriptional regulat 88.0 1.2 4.1E-05 36.9 7.0 71 374-464 33-103 (138)
57 2nnn_A Probable transcriptiona 87.9 1 3.6E-05 37.3 6.5 78 364-464 35-112 (140)
58 3cjn_A Transcriptional regulat 87.6 1.3 4.3E-05 38.1 7.0 71 374-464 56-126 (162)
59 2nyx_A Probable transcriptiona 87.4 1.2 4.1E-05 38.7 6.8 70 375-464 50-119 (168)
60 2a61_A Transcriptional regulat 87.1 1.3 4.4E-05 37.1 6.7 71 374-464 37-107 (145)
61 3ivs_A Homocitrate synthase, m 86.9 5 0.00017 40.8 12.0 125 115-251 75-201 (423)
62 3ewb_X 2-isopropylmalate synth 86.9 8.4 0.00029 37.0 13.1 128 115-251 41-171 (293)
63 2fbi_A Probable transcriptiona 86.8 1 3.4E-05 37.5 5.8 71 374-464 40-110 (142)
64 1ub9_A Hypothetical protein PH 86.7 1.4 4.9E-05 34.3 6.4 73 375-467 21-93 (100)
65 2fa5_A Transcriptional regulat 86.6 1.4 4.8E-05 37.7 6.8 70 375-464 54-123 (162)
66 1on2_A Transcriptional regulat 86.6 2.9 0.0001 35.0 8.7 67 371-463 9-75 (142)
67 3fm5_A Transcriptional regulat 86.5 1.1 3.9E-05 37.9 6.0 71 375-465 44-115 (150)
68 3bdd_A Regulatory protein MARR 86.1 2.2 7.4E-05 35.4 7.6 65 374-458 35-99 (142)
69 1nvm_A HOA, 4-hydroxy-2-oxoval 86.1 3.7 0.00012 40.5 10.3 100 135-251 71-170 (345)
70 3bja_A Transcriptional regulat 85.7 1.1 3.7E-05 37.1 5.5 70 375-464 38-107 (139)
71 3f3x_A Transcriptional regulat 85.4 1.4 4.8E-05 36.9 6.0 71 374-465 41-111 (144)
72 3jw4_A Transcriptional regulat 85.4 0.48 1.6E-05 40.2 3.0 72 374-465 45-118 (148)
73 4b8x_A SCO5413, possible MARR- 85.4 1.9 6.5E-05 36.7 6.9 63 382-464 49-111 (147)
74 3tgn_A ADC operon repressor AD 85.2 2.3 7.8E-05 35.5 7.3 68 374-462 42-109 (146)
75 1sfx_A Conserved hypothetical 85.2 2.9 0.0001 32.8 7.6 70 375-465 25-94 (109)
76 1s3j_A YUSO protein; structura 85.0 1.7 5.7E-05 36.9 6.4 70 375-464 42-111 (155)
77 1xmk_A Double-stranded RNA-spe 84.8 2.7 9.3E-05 32.2 6.7 63 371-456 12-74 (79)
78 2qww_A Transcriptional regulat 84.7 1.3 4.6E-05 37.5 5.6 70 375-464 46-117 (154)
79 2hzt_A Putative HTH-type trans 84.5 4 0.00014 32.7 8.1 65 376-461 20-85 (107)
80 2dqw_A Dihydropteroate synthas 84.1 4.8 0.00016 38.9 9.7 120 115-242 66-219 (294)
81 2fxa_A Protease production reg 83.9 1.5 5.2E-05 39.8 5.9 77 365-464 46-122 (207)
82 2nx9_A Oxaloacetate decarboxyl 83.8 5.1 0.00017 41.3 10.4 119 115-251 44-179 (464)
83 3eeg_A 2-isopropylmalate synth 83.7 3.6 0.00012 40.3 8.9 124 115-250 42-171 (325)
84 2x4h_A Hypothetical protein SS 83.5 6.3 0.00021 32.7 9.3 65 372-463 19-83 (139)
85 1hsj_A Fusion protein consisti 83.4 1 3.4E-05 46.3 5.0 77 374-470 408-486 (487)
86 1rqb_A Transcarboxylase 5S sub 83.2 5.2 0.00018 42.0 10.3 119 115-251 61-196 (539)
87 3u2r_A Regulatory protein MARR 83.0 1.2 4.2E-05 38.6 4.7 71 375-465 51-123 (168)
88 3lmz_A Putative sugar isomeras 82.9 6.8 0.00023 36.2 10.2 77 163-250 33-109 (257)
89 4fx0_A Probable transcriptiona 82.6 2.1 7.1E-05 36.5 6.0 59 384-463 52-110 (148)
90 3rmj_A 2-isopropylmalate synth 82.5 5 0.00017 40.0 9.5 121 124-251 55-178 (370)
91 2h09_A Transcriptional regulat 82.4 5.2 0.00018 34.0 8.5 68 369-462 39-106 (155)
92 1eye_A DHPS 1, dihydropteroate 82.4 23 0.00079 33.8 13.8 121 115-242 43-199 (280)
93 1h4p_A Glucan 1,3-beta-glucosi 82.3 7.5 0.00026 39.2 10.9 122 160-294 73-222 (408)
94 3boq_A Transcriptional regulat 82.0 1.1 3.9E-05 38.2 4.0 71 375-465 52-123 (160)
95 2bv6_A MGRA, HTH-type transcri 81.7 1.4 4.7E-05 36.8 4.4 70 374-463 41-110 (142)
96 2whl_A Beta-mannanase, baman5; 81.5 25 0.00085 33.2 13.9 110 162-295 33-152 (294)
97 4a5n_A Uncharacterized HTH-typ 81.4 5.6 0.00019 33.5 8.0 65 376-461 32-97 (131)
98 3qr3_A Endoglucanase EG-II; TI 81.4 3.5 0.00012 40.6 7.9 115 161-294 44-175 (340)
99 2fsw_A PG_0823 protein; alpha- 81.2 4.1 0.00014 32.6 6.9 67 375-462 30-97 (107)
100 1tx2_A DHPS, dihydropteroate s 81.0 24 0.00081 34.0 13.4 119 115-242 77-226 (297)
101 1p4x_A Staphylococcal accessor 80.7 2.6 8.8E-05 39.7 6.3 81 365-468 156-238 (250)
102 2pex_A Transcriptional regulat 80.1 1.4 4.8E-05 37.3 4.0 67 375-461 52-118 (153)
103 3cuo_A Uncharacterized HTH-typ 79.4 8.1 0.00028 29.7 8.1 45 374-419 28-72 (99)
104 1okr_A MECI, methicillin resis 79.3 3.2 0.00011 33.7 5.8 66 375-461 15-83 (123)
105 2p0o_A Hypothetical protein DU 79.2 14 0.00049 36.7 11.3 121 152-296 5-175 (372)
106 3df8_A Possible HXLR family tr 78.5 5.4 0.00019 32.3 6.9 68 375-468 32-102 (111)
107 2q02_A Putative cytoplasmic pr 78.5 9.3 0.00032 35.3 9.5 110 163-294 22-135 (272)
108 1yyv_A Putative transcriptiona 78.4 4.3 0.00015 34.0 6.4 66 375-461 40-106 (131)
109 1x7f_A Outer surface protein; 78.2 7.7 0.00026 38.8 9.1 122 152-296 29-201 (385)
110 1tvn_A Cellulase, endoglucanas 78.1 9.5 0.00033 36.1 9.6 123 158-295 36-163 (293)
111 1z91_A Organic hydroperoxide r 78.0 1 3.5E-05 37.8 2.4 68 374-461 44-111 (147)
112 1z7u_A Hypothetical protein EF 77.8 5.2 0.00018 32.3 6.6 59 383-461 34-93 (112)
113 1p4x_A Staphylococcal accessor 77.8 2.3 7.8E-05 40.1 4.9 80 364-466 31-112 (250)
114 2ztj_A Homocitrate synthase; ( 77.6 37 0.0013 33.7 14.2 123 115-251 39-165 (382)
115 3cqj_A L-ribulose-5-phosphate 77.5 15 0.00052 34.4 10.9 119 163-294 33-162 (295)
116 3u5c_T 40S ribosomal protein S 77.1 4.2 0.00014 34.8 5.8 63 381-468 67-142 (144)
117 1f6y_A 5-methyltetrahydrofolat 76.9 12 0.00043 35.2 9.9 116 115-241 39-185 (262)
118 3tva_A Xylose isomerase domain 76.6 10 0.00036 35.4 9.4 111 163-294 24-154 (290)
119 2y5s_A DHPS, dihydropteroate s 76.4 30 0.001 33.2 12.5 121 115-243 60-217 (294)
120 1h1n_A Endo type cellulase ENG 75.8 38 0.0013 32.1 13.3 115 161-293 32-158 (305)
121 3bdk_A D-mannonate dehydratase 75.7 11 0.00037 37.8 9.5 87 161-254 31-127 (386)
122 2f2e_A PA1607; transcription f 75.7 8.9 0.0003 32.6 7.8 59 382-461 35-93 (146)
123 2oqg_A Possible transcriptiona 75.3 9.2 0.00031 30.4 7.4 67 374-464 25-91 (114)
124 3dx5_A Uncharacterized protein 75.2 17 0.00058 33.8 10.5 116 163-294 18-138 (286)
125 2p8t_A Hypothetical protein PH 74.2 11 0.00038 34.1 8.3 55 382-463 28-82 (200)
126 2co5_A Viral protein F93; vira 73.9 6.4 0.00022 31.4 5.9 56 388-465 32-88 (99)
127 3vni_A Xylose isomerase domain 73.8 13 0.00043 34.9 9.1 115 163-294 20-147 (294)
128 1r7j_A Conserved hypothetical 73.8 15 0.0005 28.9 8.0 51 384-461 20-70 (95)
129 1i60_A IOLI protein; beta barr 72.7 9.7 0.00033 35.2 7.9 80 163-250 17-104 (278)
130 1vjz_A Endoglucanase; TM1752, 72.5 9.1 0.00031 37.1 8.0 125 160-294 36-182 (341)
131 2obp_A Putative DNA-binding pr 72.4 12 0.0004 29.8 7.0 58 383-462 35-92 (96)
132 3iz6_S 40S ribosomal protein S 72.2 4.6 0.00016 34.6 4.9 44 401-469 102-145 (146)
133 3qc0_A Sugar isomerase; TIM ba 71.5 17 0.00058 33.4 9.3 111 163-294 21-138 (275)
134 3aof_A Endoglucanase; glycosyl 71.5 8.7 0.0003 36.7 7.5 115 160-294 33-163 (317)
135 3f6v_A Possible transcriptiona 71.2 7.8 0.00027 33.3 6.3 71 372-466 60-130 (151)
136 4hty_A Cellulase; (alpha/beta) 70.6 33 0.0011 33.5 11.7 122 161-295 86-223 (359)
137 1qbj_A Protein (double-strande 70.5 14 0.00049 28.2 7.0 54 365-419 5-61 (81)
138 1wky_A Endo-beta-1,4-mannanase 69.9 73 0.0025 32.4 14.4 113 162-295 41-160 (464)
139 3k13_A 5-methyltetrahydrofolat 69.6 48 0.0016 31.9 12.1 64 115-186 51-120 (300)
140 1egz_A Endoglucanase Z, EGZ, C 69.4 9.7 0.00033 36.0 7.2 118 160-295 38-161 (291)
141 3ctl_A D-allulose-6-phosphate 69.3 2.3 7.9E-05 39.5 2.6 145 135-324 47-195 (231)
142 2bdq_A Copper homeostasis prot 69.2 34 0.0012 31.4 10.4 111 118-249 31-152 (224)
143 1fx7_A Iron-dependent represso 69.1 12 0.0004 34.3 7.5 55 383-463 21-77 (230)
144 2fbk_A Transcriptional regulat 68.0 2.7 9.1E-05 36.9 2.7 70 375-464 74-146 (181)
145 1twd_A Copper homeostasis prot 68.0 21 0.00071 33.6 8.8 107 118-250 31-148 (256)
146 3gk0_A PNP synthase, pyridoxin 67.2 42 0.0014 31.7 10.7 95 122-232 133-231 (278)
147 3p6l_A Sugar phosphate isomera 67.2 16 0.00054 33.6 8.1 85 163-250 25-111 (262)
148 2xzm_T RPS19E; ribosome, trans 67.2 16 0.00053 31.6 7.1 72 376-467 65-149 (155)
149 7a3h_A Endoglucanase; hydrolas 65.6 81 0.0028 29.8 13.0 120 159-295 42-169 (303)
150 3jth_A Transcription activator 65.6 28 0.00095 26.8 8.1 44 374-419 27-70 (98)
151 3tr9_A Dihydropteroate synthas 65.2 78 0.0027 30.6 12.6 115 115-239 63-221 (314)
152 3obe_A Sugar phosphate isomera 64.7 20 0.00069 34.1 8.5 117 163-294 39-165 (305)
153 3nco_A Endoglucanase fncel5A; 64.5 25 0.00086 33.5 9.2 112 160-295 41-172 (320)
154 2qq9_A Diphtheria toxin repres 63.9 14 0.00049 33.7 6.9 54 384-463 22-77 (226)
155 3b73_A PHIH1 repressor-like pr 63.7 12 0.0004 30.6 5.5 45 373-418 16-62 (111)
156 3bg3_A Pyruvate carboxylase, m 62.9 41 0.0014 36.5 11.2 79 160-251 197-282 (718)
157 2jt1_A PEFI protein; solution 62.7 19 0.00067 27.2 6.3 52 368-420 6-59 (77)
158 1ceo_A Cellulase CELC; glycosy 61.9 14 0.00049 35.6 6.9 117 161-294 29-166 (343)
159 1bja_A Transcription regulator 61.7 20 0.00069 28.4 6.3 65 373-464 19-84 (95)
160 1tz9_A Mannonate dehydratase; 61.7 50 0.0017 32.2 10.9 79 162-249 23-114 (367)
161 3l23_A Sugar phosphate isomera 61.0 54 0.0018 30.9 10.8 110 163-294 32-159 (303)
162 3ngf_A AP endonuclease, family 60.8 49 0.0017 30.3 10.3 111 163-298 26-151 (269)
163 1nvm_A HOA, 4-hydroxy-2-oxoval 60.6 55 0.0019 31.9 10.9 119 93-241 149-269 (345)
164 3cyv_A URO-D, UPD, uroporphyri 60.5 88 0.003 30.3 12.5 62 115-179 201-269 (354)
165 4hb7_A Dihydropteroate synthas 60.4 1.1E+02 0.0039 28.7 13.1 116 115-237 44-187 (270)
166 3ewb_X 2-isopropylmalate synth 60.0 38 0.0013 32.4 9.4 83 93-185 150-234 (293)
167 3ovp_A Ribulose-phosphate 3-ep 59.9 24 0.00083 32.4 7.7 111 115-258 33-147 (228)
168 2htj_A P fimbrial regulatory p 59.7 26 0.00089 26.1 6.6 43 375-418 5-47 (81)
169 1ur4_A Galactanase; hydrolase, 59.2 19 0.00064 36.3 7.2 132 162-304 50-206 (399)
170 3inp_A D-ribulose-phosphate 3- 59.1 45 0.0015 31.0 9.4 135 115-294 56-195 (246)
171 3ble_A Citramalate synthase fr 59.0 58 0.002 31.7 10.7 66 115-185 183-250 (337)
172 1xn7_A Hypothetical protein YH 58.8 19 0.00066 27.2 5.6 45 373-418 5-49 (78)
173 2vp8_A Dihydropteroate synthas 58.6 83 0.0028 30.4 11.5 118 115-241 79-238 (318)
174 2y8k_A Arabinoxylanase, carboh 58.5 33 0.0011 35.2 9.2 129 161-295 40-174 (491)
175 1yx1_A Hypothetical protein PA 58.2 12 0.00041 34.6 5.4 76 163-251 26-105 (264)
176 3ndz_A Endoglucanase D; cellot 58.1 14 0.00047 36.2 6.0 124 160-293 42-186 (345)
177 2wte_A CSA3; antiviral protein 57.7 25 0.00086 32.7 7.5 60 376-460 158-217 (244)
178 3u0h_A Xylose isomerase domain 57.7 14 0.00047 34.2 5.7 113 163-294 19-137 (281)
179 3kws_A Putative sugar isomeras 57.1 58 0.002 30.1 10.1 108 163-294 41-161 (287)
180 2qw5_A Xylose isomerase-like T 56.9 24 0.00083 33.8 7.5 79 164-247 35-126 (335)
181 3vnd_A TSA, tryptophan synthas 56.7 54 0.0018 30.9 9.6 116 132-254 4-134 (267)
182 2nx9_A Oxaloacetate decarboxyl 56.1 34 0.0012 35.1 8.7 101 92-214 157-259 (464)
183 2vef_A Dihydropteroate synthas 55.8 73 0.0025 30.8 10.6 118 115-241 47-222 (314)
184 3cta_A Riboflavin kinase; stru 55.5 22 0.00076 32.4 6.7 64 379-465 22-85 (230)
185 2ftp_A Hydroxymethylglutaryl-C 55.2 40 0.0014 32.2 8.7 64 115-183 173-238 (302)
186 1y0u_A Arsenical resistance op 54.8 44 0.0015 25.6 7.4 41 375-418 36-76 (96)
187 3pzt_A Endoglucanase; alpha/be 54.8 1.5E+02 0.0051 28.3 13.0 117 160-295 68-193 (327)
188 1k77_A EC1530, hypothetical pr 54.8 85 0.0029 28.3 10.7 74 163-250 18-105 (260)
189 3f8b_A Transcriptional regulat 54.7 50 0.0017 26.6 8.0 48 401-465 49-96 (116)
190 3iwp_A Copper homeostasis prot 54.6 50 0.0017 31.5 9.0 108 116-249 67-185 (287)
191 3o0f_A Putative metal-dependen 54.3 22 0.00076 34.2 6.6 34 206-243 220-253 (301)
192 3s1x_A Probable transaldolase; 53.6 23 0.00079 32.6 6.2 99 124-251 28-133 (223)
193 3f4w_A Putative hexulose 6 pho 53.0 61 0.0021 28.6 9.1 90 135-249 42-133 (211)
194 2yci_X 5-methyltetrahydrofolat 52.9 1.1E+02 0.0037 28.8 11.1 107 164-295 38-163 (271)
195 2v7f_A RPS19, RPS19E SSU ribos 52.8 29 0.001 29.8 6.5 55 388-468 71-139 (150)
196 1rqb_A Transcarboxylase 5S sub 52.8 37 0.0013 35.5 8.4 103 92-214 174-278 (539)
197 3m16_A Transaldolase; dimer, m 52.6 1.2E+02 0.0041 29.5 11.5 135 131-294 76-227 (329)
198 2hk0_A D-psicose 3-epimerase; 52.4 1.1E+02 0.0036 28.7 11.2 76 163-249 40-126 (309)
199 1ydn_A Hydroxymethylglutaryl-C 52.4 57 0.0019 30.9 9.2 29 115-144 169-197 (295)
200 1ece_A Endocellulase E1; glyco 52.3 35 0.0012 32.9 7.9 124 163-295 47-196 (358)
201 3l7w_A Putative uncharacterize 52.0 24 0.00081 28.1 5.5 52 394-464 36-87 (108)
202 3f6o_A Probable transcriptiona 51.9 31 0.0011 27.8 6.3 66 375-464 23-88 (118)
203 3l55_A B-1,4-endoglucanase/cel 51.2 50 0.0017 32.3 8.8 123 160-292 52-197 (353)
204 3erp_A Putative oxidoreductase 50.8 64 0.0022 31.4 9.5 57 228-302 133-192 (353)
205 3hbl_A Pyruvate carboxylase; T 50.6 1.2E+02 0.0041 34.7 12.9 101 92-214 691-793 (1150)
206 3qho_A Endoglucanase, 458AA lo 50.6 58 0.002 33.2 9.4 139 163-302 87-257 (458)
207 2d1h_A ST1889, 109AA long hypo 50.5 61 0.0021 24.7 7.8 37 382-419 34-70 (109)
208 2bp1_A Aflatoxin B1 aldehyde r 50.3 89 0.0031 30.5 10.5 60 226-303 114-176 (360)
209 3eau_A Voltage-gated potassium 49.9 73 0.0025 30.5 9.7 57 228-302 98-157 (327)
210 3clm_A Transaldolase; YP_20865 49.3 72 0.0025 31.4 9.5 89 150-254 103-206 (352)
211 3e02_A Uncharacterized protein 48.8 67 0.0023 31.0 9.0 67 115-184 48-117 (311)
212 1gcy_A Glucan 1,4-alpha-maltot 48.8 23 0.00077 36.8 6.1 63 164-227 41-120 (527)
213 1ht6_A AMY1, alpha-amylase iso 48.8 13 0.00043 37.2 4.1 63 164-227 25-96 (405)
214 2x7v_A Probable endonuclease 4 48.6 82 0.0028 28.8 9.6 84 163-250 15-109 (287)
215 3bg3_A Pyruvate carboxylase, m 48.6 69 0.0024 34.7 10.0 102 92-214 260-363 (718)
216 3mcm_A 2-amino-4-hydroxy-6-hyd 48.5 57 0.0019 33.2 8.8 112 115-232 226-378 (442)
217 1sd4_A Penicillinase repressor 48.5 39 0.0013 27.1 6.4 47 373-419 13-62 (126)
218 3civ_A Endo-beta-1,4-mannanase 48.2 23 0.0008 34.7 5.8 59 164-223 57-120 (343)
219 3aam_A Endonuclease IV, endoiv 48.2 41 0.0014 30.8 7.4 82 163-248 17-106 (270)
220 2o9p_A Beta-glucosidase B; fam 48.0 20 0.00068 36.7 5.4 92 163-258 70-176 (454)
221 1m5w_A Pyridoxal phosphate bio 47.9 7 0.00024 36.3 1.8 92 129-232 112-203 (243)
222 2qul_A D-tagatose 3-epimerase; 47.5 82 0.0028 28.9 9.4 77 163-249 20-107 (290)
223 2dh2_A 4F2 cell-surface antige 47.4 21 0.0007 36.0 5.4 85 164-249 40-141 (424)
224 1lwj_A 4-alpha-glucanotransfer 47.2 17 0.00059 36.6 4.8 70 164-234 27-104 (441)
225 1qgp_A Protein (double strande 46.9 31 0.0011 25.8 5.1 46 373-419 17-65 (77)
226 3aal_A Probable endonuclease 4 46.9 28 0.00095 32.8 6.0 17 163-179 21-37 (303)
227 3pqk_A Biofilm growth-associat 46.9 95 0.0032 23.8 8.3 43 375-419 28-70 (102)
228 1qtw_A Endonuclease IV; DNA re 46.6 87 0.003 28.6 9.4 85 162-250 14-109 (285)
229 3jug_A Beta-mannanase; TIM-bar 46.4 2.1E+02 0.0073 27.7 15.2 112 163-295 57-175 (345)
230 2heo_A Z-DNA binding protein 1 46.3 35 0.0012 24.6 5.2 43 374-417 14-57 (67)
231 1ccw_A Protein (glutamate muta 46.2 13 0.00044 31.3 3.1 73 163-247 44-116 (137)
232 2zvr_A Uncharacterized protein 46.0 43 0.0015 31.1 7.2 19 230-248 113-131 (290)
233 4esf_A PADR-like transcription 45.7 82 0.0028 25.4 7.9 47 401-464 46-92 (117)
234 3ugs_B Undecaprenyl pyrophosph 45.2 39 0.0013 31.0 6.4 65 207-290 20-84 (225)
235 3e49_A Uncharacterized protein 45.0 27 0.00092 33.8 5.5 66 115-183 48-116 (311)
236 3lut_A Voltage-gated potassium 44.8 86 0.0029 30.6 9.4 58 228-303 132-192 (367)
237 3icg_A Endoglucanase D; cellul 44.5 6.3 0.00022 41.0 1.0 124 160-292 45-188 (515)
238 3tkf_A Transaldolase; structur 43.9 80 0.0027 30.9 8.8 136 130-294 94-247 (345)
239 3ivs_A Homocitrate synthase, m 43.8 1.6E+02 0.0053 29.7 11.2 103 164-295 65-167 (423)
240 2bdq_A Copper homeostasis prot 43.4 1E+02 0.0035 28.2 8.9 139 94-262 74-219 (224)
241 3apg_A Beta-glucosidase; TIM b 43.3 15 0.00051 37.9 3.6 62 163-225 63-155 (473)
242 3ayr_A Endoglucanase; TIM barr 43.1 30 0.001 34.0 5.8 123 160-293 62-205 (376)
243 1e4i_A Beta-glucosidase; hydro 43.1 24 0.00082 36.0 5.1 92 163-258 61-168 (447)
244 3txv_A Probable tagatose 6-pho 42.9 1.2E+02 0.0041 30.8 10.0 162 128-294 29-217 (450)
245 2inf_A URO-D, UPD, uroporphyri 42.9 1.5E+02 0.0051 28.7 10.8 122 115-263 207-339 (359)
246 1rh9_A Endo-beta-mannanase; en 42.4 1.3E+02 0.0045 28.9 10.3 113 162-294 44-207 (373)
247 2z1k_A (NEO)pullulanase; hydro 42.2 14 0.0005 37.5 3.3 38 197-235 95-132 (475)
248 2qf7_A Pyruvate carboxylase pr 42.2 33 0.0011 39.4 6.6 78 161-251 646-730 (1165)
249 2cob_A LCOR protein; MLR2, KIA 42.2 4.4 0.00015 30.2 -0.4 42 194-235 12-53 (70)
250 2g0w_A LMO2234 protein; putati 42.2 43 0.0015 31.4 6.5 20 452-471 276-295 (296)
251 3lot_A Uncharacterized protein 42.2 95 0.0032 30.0 8.9 68 115-185 48-120 (314)
252 2eja_A URO-D, UPD, uroporphyri 41.7 1.5E+02 0.0052 28.3 10.6 121 115-262 193-324 (338)
253 1xma_A Predicted transcription 41.5 66 0.0022 27.1 6.9 48 401-465 78-125 (145)
254 2k02_A Ferrous iron transport 41.5 29 0.00099 26.9 4.2 44 374-418 6-49 (87)
255 3nav_A Tryptophan synthase alp 41.3 31 0.0011 32.6 5.3 90 162-254 36-136 (271)
256 1vem_A Beta-amylase; beta-alph 41.0 26 0.00088 36.5 5.0 54 163-220 32-88 (516)
257 3n6q_A YGHZ aldo-keto reductas 40.9 1.2E+02 0.004 29.3 9.6 58 228-303 112-172 (346)
258 1g01_A Endoglucanase; alpha/be 40.7 80 0.0028 30.7 8.5 126 160-296 53-192 (364)
259 1vff_A Beta-glucosidase; glyco 40.5 54 0.0018 33.1 7.2 92 163-259 53-159 (423)
260 3dhu_A Alpha-amylase; structur 40.2 14 0.00048 37.4 2.8 63 164-227 34-111 (449)
261 1j93_A UROD, uroporphyrinogen 40.0 1.2E+02 0.0042 29.2 9.7 60 115-180 207-274 (353)
262 1wi9_A Protein C20ORF116 homol 39.9 29 0.00098 26.0 3.7 43 373-416 10-52 (72)
263 2wc7_A Alpha amylase, catalyti 39.8 12 0.00043 38.2 2.4 39 197-236 101-139 (488)
264 2ztj_A Homocitrate synthase; ( 39.7 2.7E+02 0.0091 27.4 12.1 101 164-294 29-131 (382)
265 1r1u_A CZRA, repressor protein 39.6 1.2E+02 0.004 23.6 7.8 43 375-419 31-73 (106)
266 2hl0_A Threonyl-tRNA synthetas 39.2 1.1E+02 0.0036 26.1 7.6 48 237-296 66-113 (143)
267 2cw6_A Hydroxymethylglutaryl-C 39.1 2.5E+02 0.0085 26.4 13.8 77 93-182 156-234 (298)
268 2b0l_A GTP-sensing transcripti 39.1 75 0.0026 25.0 6.5 47 372-419 30-77 (102)
269 1ydo_A HMG-COA lyase; TIM-barr 39.1 53 0.0018 31.5 6.6 77 93-182 157-235 (307)
270 1bxb_A Xylose isomerase; xylos 39.0 2.8E+02 0.0096 26.9 13.2 118 163-293 36-173 (387)
271 2dqw_A Dihydropteroate synthas 39.0 44 0.0015 32.0 5.9 119 164-294 56-192 (294)
272 2guy_A Alpha-amylase A; (beta- 39.0 14 0.00047 37.7 2.6 30 196-226 95-124 (478)
273 1s2w_A Phosphoenolpyruvate pho 39.0 27 0.00091 33.6 4.4 93 95-213 169-261 (295)
274 2pfu_A Biopolymer transport EX 38.9 43 0.0015 25.8 5.0 61 117-183 31-94 (99)
275 1oyi_A Double-stranded RNA-bin 38.5 40 0.0014 25.9 4.4 47 372-420 19-65 (82)
276 1bqc_A Protein (beta-mannanase 38.3 1.4E+02 0.0047 27.9 9.5 113 164-295 36-158 (302)
277 1m5w_A Pyridoxal phosphate bio 38.3 1.3E+02 0.0043 27.9 8.6 122 150-295 67-189 (243)
278 1ug6_A Beta-glycosidase; gluco 38.2 27 0.00092 35.4 4.5 93 163-259 60-168 (431)
279 3hhh_A Transcriptional regulat 38.0 1.2E+02 0.0042 24.3 7.8 48 401-465 48-95 (116)
280 3l0g_A Nicotinate-nucleotide p 37.7 19 0.00064 34.7 3.1 55 115-183 228-282 (300)
281 2esh_A Conserved hypothetical 37.7 42 0.0014 27.1 4.9 46 402-465 52-97 (118)
282 3dxi_A Putative aldolase; TIM 37.6 43 0.0015 32.5 5.7 98 135-250 63-163 (320)
283 2aaa_A Alpha-amylase; glycosid 37.6 13 0.00045 38.0 2.1 62 164-226 47-124 (484)
284 2dql_A PEX protein; circadian 37.1 63 0.0022 26.0 5.9 49 401-465 58-106 (115)
285 2p10_A MLL9387 protein; putati 36.7 2.4E+02 0.0083 26.7 10.5 103 137-251 82-191 (286)
286 2kko_A Possible transcriptiona 36.6 85 0.0029 24.6 6.6 35 383-418 37-71 (108)
287 3apt_A Methylenetetrahydrofola 36.3 2.9E+02 0.0098 26.3 11.4 89 150-251 13-107 (310)
288 1ua7_A Alpha-amylase; beta-alp 36.3 14 0.00048 37.1 2.1 63 164-227 21-102 (422)
289 2j78_A Beta-glucosidase A; fam 36.0 53 0.0018 33.6 6.4 92 163-258 84-191 (468)
290 4aef_A Neopullulanase (alpha-a 35.8 20 0.0007 38.2 3.4 73 163-236 242-322 (645)
291 1u2w_A CADC repressor, cadmium 35.7 1.1E+02 0.0039 24.5 7.3 43 375-418 47-89 (122)
292 1aw2_A Triosephosphate isomera 35.4 2.2E+02 0.0074 26.6 10.0 106 160-290 79-198 (256)
293 2v5b_A Triosephosphate isomera 35.3 2.7E+02 0.0092 25.7 11.3 109 164-290 72-190 (244)
294 4aie_A Glucan 1,6-alpha-glucos 35.3 20 0.00069 36.9 3.1 66 164-230 36-110 (549)
295 3vni_A Xylose isomerase domain 35.2 1.3E+02 0.0046 27.5 8.8 109 128-250 44-182 (294)
296 1kwg_A Beta-galactosidase; TIM 35.2 39 0.0013 36.0 5.5 56 162-220 16-71 (645)
297 1wcg_A Thioglucosidase, myrosi 35.0 47 0.0016 34.0 5.7 102 163-269 62-180 (464)
298 3o6c_A PNP synthase, pyridoxin 34.9 54 0.0018 30.7 5.6 92 129-232 109-223 (260)
299 1q7z_A 5-methyltetrahydrofolat 34.3 2.6E+02 0.0089 29.2 11.5 119 115-243 354-499 (566)
300 3gk0_A PNP synthase, pyridoxin 34.2 1.3E+02 0.0045 28.3 8.1 89 150-251 95-184 (278)
301 4esb_A Transcriptional regulat 34.2 63 0.0022 26.0 5.4 48 401-465 44-91 (115)
302 3noy_A 4-hydroxy-3-methylbut-2 33.9 43 0.0015 33.0 5.0 133 154-297 109-268 (366)
303 3flu_A DHDPS, dihydrodipicolin 33.9 2.9E+02 0.01 25.9 11.0 76 166-250 34-109 (297)
304 2lkp_A Transcriptional regulat 33.8 1.4E+02 0.0047 23.5 7.5 35 383-418 44-78 (119)
305 2o0m_A Transcriptional regulat 33.8 8.7 0.0003 37.7 0.0 44 373-417 23-66 (345)
306 3hjz_A Transaldolase B; parach 33.8 1.1E+02 0.0038 29.7 8.0 136 131-295 72-224 (334)
307 1ea9_C Cyclomaltodextrinase; h 33.8 33 0.0011 36.0 4.6 71 163-234 175-253 (583)
308 1eye_A DHPS 1, dihydropteroate 33.7 90 0.0031 29.6 7.2 122 164-295 33-171 (280)
309 4ad1_A Glycosyl hydrolase fami 33.6 75 0.0026 31.5 6.9 68 163-241 107-175 (380)
310 3l09_A Putative transcriptiona 33.6 51 0.0017 31.1 5.3 79 365-466 22-104 (266)
311 1j0h_A Neopullulanase; beta-al 33.6 31 0.0011 36.3 4.3 72 164-236 180-259 (588)
312 2vr5_A Glycogen operon protein 33.6 75 0.0026 34.3 7.4 62 165-227 207-294 (718)
313 1tqj_A Ribulose-phosphate 3-ep 33.4 19 0.00065 33.1 2.3 96 135-259 52-148 (230)
314 4gqr_A Pancreatic alpha-amylas 33.3 17 0.00057 36.7 2.1 30 194-224 72-101 (496)
315 3w01_A Heptaprenylglyceryl pho 33.0 1.7E+02 0.0058 26.9 8.7 129 155-297 17-166 (235)
316 3daq_A DHDPS, dihydrodipicolin 32.8 2.6E+02 0.0089 26.2 10.4 78 164-250 27-104 (292)
317 3edf_A FSPCMD, cyclomaltodextr 32.8 26 0.00087 37.1 3.5 64 163-227 151-226 (601)
318 1vpx_A Protein (transaldolase 32.1 1.2E+02 0.0043 27.7 7.6 76 151-252 65-143 (230)
319 3k2z_A LEXA repressor; winged 32.1 69 0.0024 28.2 5.8 52 369-421 8-60 (196)
320 3qfe_A Putative dihydrodipicol 32.1 3.2E+02 0.011 26.1 11.0 116 95-228 31-151 (318)
321 2cks_A Endoglucanase E-5; carb 32.0 3.1E+02 0.011 25.4 12.6 112 161-295 43-166 (306)
322 3rmj_A 2-isopropylmalate synth 31.8 1.9E+02 0.0066 28.4 9.5 83 93-185 157-241 (370)
323 2c0h_A Mannan endo-1,4-beta-ma 31.7 70 0.0024 30.5 6.3 95 162-258 47-166 (353)
324 1ku9_A Hypothetical protein MJ 31.7 1.4E+02 0.0047 24.0 7.4 36 382-418 39-74 (152)
325 1wzl_A Alpha-amylase II; pullu 31.6 34 0.0012 36.0 4.2 73 163-236 176-256 (585)
326 2d0j_A Galactosylgalactosylxyl 31.6 1.2E+02 0.004 28.3 7.3 90 118-212 5-94 (246)
327 1hvx_A Alpha-amylase; hydrolas 31.5 72 0.0025 32.8 6.6 30 196-226 79-108 (515)
328 1qox_A Beta-glucosidase; hydro 31.5 39 0.0013 34.5 4.4 92 163-258 61-168 (449)
329 1r3s_A URO-D, uroporphyrinogen 31.3 3E+02 0.01 26.6 10.9 127 115-263 211-350 (367)
330 3ri2_A Transcriptional regulat 31.2 67 0.0023 26.3 5.1 47 401-465 54-100 (123)
331 1tre_A Triosephosphate isomera 31.1 3E+02 0.01 25.6 10.2 106 160-290 77-196 (255)
332 4djd_D C/Fe-SP, corrinoid/iron 31.1 1.7E+02 0.0059 28.2 8.8 121 115-241 95-236 (323)
333 1gve_A Aflatoxin B1 aldehyde r 31.0 3.1E+02 0.011 25.9 10.8 60 226-303 81-143 (327)
334 1v84_A Galactosylgalactosylxyl 30.9 2E+02 0.0067 26.8 8.7 90 117-211 4-99 (253)
335 3l21_A DHDPS, dihydrodipicolin 30.8 2.4E+02 0.0084 26.6 9.9 30 220-249 87-116 (304)
336 2f6u_A GGGPS, (S)-3-O-geranylg 30.7 3.1E+02 0.011 25.0 10.4 81 154-260 13-94 (234)
337 2vef_A Dihydropteroate synthas 30.7 96 0.0033 29.9 6.9 23 164-186 37-59 (314)
338 1xim_A D-xylose isomerase; iso 30.6 2.4E+02 0.0083 27.5 10.2 117 163-293 36-173 (393)
339 2osx_A Endoglycoceramidase II; 30.6 1.6E+02 0.0054 29.8 9.0 57 160-221 65-126 (481)
340 3aie_A Glucosyltransferase-SI; 30.5 32 0.0011 38.0 3.8 62 163-225 636-718 (844)
341 1g94_A Alpha-amylase; beta-alp 30.5 61 0.0021 32.6 5.8 30 196-226 62-91 (448)
342 3na8_A Putative dihydrodipicol 30.4 2.3E+02 0.0077 27.1 9.6 16 199-214 106-121 (315)
343 2jsc_A Transcriptional regulat 30.3 1E+02 0.0034 24.6 6.0 43 375-419 26-68 (118)
344 3cqj_A L-ribulose-5-phosphate 30.1 2.1E+02 0.007 26.3 9.2 179 88-293 100-291 (295)
345 3si9_A DHDPS, dihydrodipicolin 30.0 3.1E+02 0.011 26.1 10.5 28 220-247 94-121 (315)
346 4ayb_P DNA-directed RNA polyme 30.0 17 0.00059 24.7 1.0 12 65-76 24-35 (48)
347 3tqv_A Nicotinate-nucleotide p 29.9 33 0.0011 32.8 3.4 54 115-182 219-272 (287)
348 3n2t_A Putative oxidoreductase 29.8 1.7E+02 0.0056 28.3 8.6 58 227-302 119-179 (348)
349 1zja_A Trehalulose synthase; s 29.6 28 0.00094 36.4 3.0 65 164-229 36-109 (557)
350 3ahx_A Beta-glucosidase A; cel 29.6 49 0.0017 33.8 4.8 92 163-258 62-169 (453)
351 3gnn_A Nicotinate-nucleotide p 29.5 54 0.0019 31.4 4.8 55 115-183 230-284 (298)
352 1qho_A Alpha-amylase; glycosid 29.5 27 0.00092 37.6 3.0 28 196-224 105-132 (686)
353 4acy_A Endo-alpha-mannosidase; 29.4 84 0.0029 31.2 6.4 68 163-241 106-173 (382)
354 2g9w_A Conserved hypothetical 29.3 1.4E+02 0.0048 24.4 7.0 46 373-419 12-62 (138)
355 2zfw_A PEX; five alpha-helices 29.2 72 0.0024 27.1 5.1 49 401-465 80-128 (148)
356 4exb_A Putative uncharacterize 29.1 2.8E+02 0.0094 26.0 9.9 64 226-303 129-194 (292)
357 7odc_A Protein (ornithine deca 28.9 66 0.0023 32.3 5.6 55 123-186 37-94 (424)
358 2ze0_A Alpha-glucosidase; TIM 28.8 33 0.0011 35.8 3.5 69 164-233 35-112 (555)
359 2qf7_A Pyruvate carboxylase pr 28.8 1.3E+02 0.0043 34.6 8.5 79 92-184 708-788 (1165)
360 1m53_A Isomaltulose synthase; 28.8 32 0.0011 36.0 3.4 70 164-234 49-127 (570)
361 2f06_A Conserved hypothetical 28.7 28 0.00095 29.0 2.4 126 151-297 8-137 (144)
362 1vpq_A Hypothetical protein TM 28.6 1.2E+02 0.004 28.6 7.0 60 115-180 120-181 (273)
363 1aj0_A DHPS, dihydropteroate s 28.6 2.7E+02 0.0092 26.2 9.6 21 275-295 159-179 (282)
364 1r1t_A Transcriptional repress 28.3 2.2E+02 0.0075 22.8 7.9 43 375-419 51-93 (122)
365 1cyg_A Cyclodextrin glucanotra 28.2 22 0.00076 38.2 2.0 28 196-224 109-136 (680)
366 2e9l_A Cytosolic beta-glucosid 28.2 49 0.0017 33.9 4.5 93 163-258 60-168 (469)
367 3ahy_A Beta-glucosidase; cellu 28.2 55 0.0019 33.6 4.9 92 163-259 65-176 (473)
368 3bh4_A Alpha-amylase; calcium, 28.2 75 0.0026 32.2 6.0 30 196-226 76-105 (483)
369 1wpc_A Glucan 1,4-alpha-maltoh 28.1 75 0.0026 32.2 6.0 30 196-226 80-109 (485)
370 3cny_A Inositol catabolism pro 28.0 1.8E+02 0.0062 26.6 8.4 114 163-294 34-156 (301)
371 1gnx_A Beta-glucosidase; hydro 27.9 39 0.0013 34.8 3.7 93 163-258 74-181 (479)
372 3dz1_A Dihydrodipicolinate syn 27.7 3.3E+02 0.011 25.8 10.3 42 198-241 88-129 (313)
373 1d3c_A Cyclodextrin glycosyltr 27.7 25 0.00085 37.8 2.3 28 196-224 113-140 (686)
374 2zic_A Dextran glucosidase; TI 27.6 31 0.0011 35.9 3.0 69 164-233 35-112 (543)
375 1vli_A Spore coat polysacchari 27.6 1.7E+02 0.0059 29.0 8.2 57 128-193 98-155 (385)
376 3no5_A Uncharacterized protein 27.5 88 0.003 29.6 5.9 116 123-247 56-201 (275)
377 3obe_A Sugar phosphate isomera 27.4 2.4E+02 0.0081 26.3 9.1 67 164-238 80-151 (305)
378 3zss_A Putative glucanohydrola 27.3 42 0.0014 36.3 4.0 61 163-224 256-345 (695)
379 1mxg_A Alpha amylase; hyperthe 27.2 43 0.0015 33.7 3.9 31 196-227 84-114 (435)
380 3o6c_A PNP synthase, pyridoxin 27.2 1.2E+02 0.0041 28.4 6.5 84 150-251 66-153 (260)
381 2e1n_A PEX, period extender; c 27.1 1E+02 0.0034 25.8 5.6 49 401-465 70-118 (138)
382 3qze_A DHDPS, dihydrodipicolin 27.0 3.1E+02 0.011 26.1 9.9 30 220-249 95-124 (314)
383 3m5v_A DHDPS, dihydrodipicolin 27.0 4E+02 0.014 25.0 12.0 17 198-214 89-105 (301)
384 2h9a_B CO dehydrogenase/acetyl 26.9 1.8E+02 0.0062 27.9 8.1 119 115-241 88-229 (310)
385 1v08_A Beta-glucosidase; glyco 26.7 49 0.0017 34.3 4.2 92 163-258 81-194 (512)
386 2xhy_A BGLA, 6-phospho-beta-gl 26.6 68 0.0023 32.9 5.3 93 163-259 74-184 (479)
387 3czg_A Sucrose hydrolase; (alp 26.6 37 0.0013 36.2 3.4 75 152-227 92-183 (644)
388 2zds_A Putative DNA-binding pr 26.5 1.2E+02 0.004 28.6 6.8 83 163-250 18-131 (340)
389 3ttq_A Dextransucrase; (beta/a 26.3 35 0.0012 38.6 3.2 29 196-225 910-938 (1108)
390 2bmb_A Folic acid synthesis pr 26.3 5.6E+02 0.019 26.5 13.2 124 115-243 268-459 (545)
391 3eeg_A 2-isopropylmalate synth 26.3 2.1E+02 0.0074 27.4 8.6 106 92-214 150-260 (325)
392 3u7v_A Beta-galactosidase; str 25.9 51 0.0017 34.5 4.2 52 160-214 73-124 (552)
393 2k4b_A Transcriptional regulat 25.6 44 0.0015 26.3 2.9 41 379-419 44-87 (99)
394 1edg_A Endoglucanase A; family 25.6 99 0.0034 30.1 6.2 126 160-292 61-211 (380)
395 3up8_A Putative 2,5-diketo-D-g 25.6 1.6E+02 0.0054 27.9 7.4 64 223-303 97-162 (298)
396 2cfx_A HTH-type transcriptiona 25.6 1.3E+02 0.0044 24.8 6.1 43 374-417 9-51 (144)
397 3tak_A DHDPS, dihydrodipicolin 25.5 3.5E+02 0.012 25.3 9.9 52 197-250 52-103 (291)
398 2ehh_A DHDPS, dihydrodipicolin 25.5 4.2E+02 0.014 24.8 10.9 28 220-247 72-99 (294)
399 2r91_A 2-keto-3-deoxy-(6-phosp 25.4 4.1E+02 0.014 24.7 11.9 72 166-249 25-96 (286)
400 3aj7_A Oligo-1,6-glucosidase; 25.3 36 0.0012 35.9 3.0 34 196-230 85-118 (589)
401 2vg0_A Short-chain Z-isoprenyl 25.3 1.5E+02 0.005 27.2 6.8 49 229-290 33-81 (227)
402 3tqn_A Transcriptional regulat 25.2 1.6E+02 0.0055 23.2 6.4 35 386-421 35-69 (113)
403 1uok_A Oligo-1,6-glucosidase; 25.1 29 0.00098 36.2 2.2 66 164-230 35-109 (558)
404 2b7n_A Probable nicotinate-nuc 25.1 60 0.002 30.6 4.2 56 115-181 203-258 (273)
405 3g8r_A Probable spore coat pol 25.0 4.8E+02 0.017 25.3 10.9 92 128-250 75-167 (350)
406 3gha_A Disulfide bond formatio 25.0 1.8E+02 0.0062 25.5 7.3 77 161-246 116-197 (202)
407 1xla_A D-xylose isomerase; iso 24.7 1.8E+02 0.0063 28.4 8.0 119 162-293 35-173 (394)
408 1muw_A Xylose isomerase; atomi 24.5 2.1E+02 0.0072 27.8 8.4 117 162-293 35-173 (386)
409 2oo0_A ODC, ornithine decarbox 24.4 75 0.0026 32.4 5.1 50 128-186 53-104 (471)
410 1g5a_A Amylosucrase; glycosylt 24.4 43 0.0015 35.6 3.4 76 152-228 99-191 (628)
411 3paj_A Nicotinate-nucleotide p 24.3 1.2E+02 0.0039 29.5 6.1 53 115-181 252-304 (320)
412 3ozy_A Putative mandelate race 24.3 5E+02 0.017 25.3 12.5 111 129-245 177-300 (389)
413 3k8k_A Alpha-amylase, SUSG; al 24.2 51 0.0018 35.4 4.0 39 196-235 104-142 (669)
414 1f3t_A ODC, ornithine decarbox 24.2 1.1E+02 0.0037 30.6 6.2 97 123-252 37-136 (425)
415 2yxg_A DHDPS, dihydrodipicolin 24.1 4.4E+02 0.015 24.5 10.5 16 199-214 82-97 (289)
416 1tx2_A DHPS, dihydropteroate s 24.0 4.2E+02 0.014 25.1 10.0 21 275-295 178-198 (297)
417 1qpo_A Quinolinate acid phosph 24.0 1.1E+02 0.0037 29.1 5.8 56 115-181 215-270 (284)
418 3bmv_A Cyclomaltodextrin gluca 24.0 30 0.001 37.1 2.1 28 196-224 114-141 (683)
419 1olt_A Oxygen-independent copr 23.9 1.3E+02 0.0045 30.2 6.9 115 92-226 120-247 (457)
420 3m07_A Putative alpha amylase; 23.8 36 0.0012 36.2 2.7 62 164-226 158-229 (618)
421 2bhu_A Maltooligosyltrehalose 23.8 32 0.0011 36.4 2.2 62 164-226 148-219 (602)
422 1viz_A PCRB protein homolog; s 23.6 2.6E+02 0.009 25.6 8.3 125 155-294 14-159 (240)
423 3h5d_A DHDPS, dihydrodipicolin 23.3 4.8E+02 0.016 24.7 11.2 50 197-248 58-108 (311)
424 4aee_A Alpha amylase, catalyti 23.3 31 0.0011 37.1 2.1 72 163-235 268-347 (696)
425 1sfu_A 34L protein; protein/Z- 23.3 2.3E+02 0.0079 21.2 6.3 44 376-420 21-64 (75)
426 3qxb_A Putative xylose isomera 23.3 1.5E+02 0.0051 27.7 6.8 83 163-249 38-133 (316)
427 2w25_A Probable transcriptiona 23.3 1.4E+02 0.0049 24.6 6.0 43 374-417 11-53 (150)
428 3tty_A Beta-GAL, beta-galactos 23.2 67 0.0023 34.5 4.7 61 151-220 10-80 (675)
429 3btn_A Antizyme inhibitor 1; T 23.2 67 0.0023 32.5 4.5 50 128-186 43-94 (448)
430 3k1d_A 1,4-alpha-glucan-branch 23.2 54 0.0018 35.6 3.9 75 152-227 247-340 (722)
431 3ayv_A Putative uncharacterize 23.1 3.2E+02 0.011 24.2 8.9 21 230-250 76-96 (254)
432 2lqo_A Putative glutaredoxin R 23.1 63 0.0021 24.9 3.3 31 113-146 54-85 (92)
433 1qnr_A Endo-1,4-B-D-mannanase; 23.0 4.6E+02 0.016 24.4 11.1 118 162-291 38-194 (344)
434 2v9d_A YAGE; dihydrodipicolini 23.0 3.9E+02 0.014 25.7 9.9 53 198-251 112-164 (343)
435 3klk_A Glucansucrase; native f 22.9 47 0.0016 37.5 3.4 61 164-225 690-771 (1039)
436 3m6y_A 4-hydroxy-2-oxoglutarat 22.9 4.6E+02 0.016 24.3 10.3 100 163-289 171-272 (275)
437 2vg3_A Undecaprenyl pyrophosph 22.9 1.5E+02 0.0053 28.1 6.6 27 229-255 85-111 (284)
438 4h8e_A Undecaprenyl pyrophosph 22.8 1.6E+02 0.0054 27.5 6.5 30 227-256 52-81 (256)
439 3fkr_A L-2-keto-3-deoxyarabona 22.7 3.8E+02 0.013 25.3 9.6 55 197-251 88-144 (309)
440 1wza_A Alpha-amylase A; hydrol 22.6 39 0.0013 34.5 2.5 36 197-233 80-115 (488)
441 2fiq_A Putative tagatose 6-pho 22.5 40 0.0014 34.0 2.5 92 126-222 20-127 (420)
442 3kxq_A Triosephosphate isomera 22.4 4.9E+02 0.017 24.4 10.3 107 160-291 102-220 (275)
443 2ze3_A DFA0005; organic waste 22.4 1.4E+02 0.0048 28.1 6.2 88 95-212 167-254 (275)
444 2pn6_A ST1022, 150AA long hypo 22.4 1.3E+02 0.0045 24.8 5.5 44 373-417 6-49 (150)
445 2hs5_A Putative transcriptiona 22.2 1.6E+02 0.0054 26.7 6.5 38 384-422 51-88 (239)
446 3qja_A IGPS, indole-3-glycerol 22.2 2.4E+02 0.0081 26.4 7.8 69 160-251 122-190 (272)
447 1vhc_A Putative KHG/KDPG aldol 22.1 3.6E+02 0.012 24.2 8.9 82 135-251 57-138 (224)
448 1p6r_A Penicillinase repressor 21.9 66 0.0023 23.7 3.2 44 375-419 14-61 (82)
449 2p5v_A Transcriptional regulat 21.8 1.6E+02 0.0054 24.8 6.0 43 374-417 14-56 (162)
450 3dxi_A Putative aldolase; TIM 21.7 2.4E+02 0.0082 27.1 7.9 64 115-184 157-222 (320)
451 3f8m_A GNTR-family protein tra 21.6 1.9E+02 0.0063 26.5 6.9 51 369-422 21-72 (248)
452 2ia0_A Putative HTH-type trans 21.6 1.6E+02 0.0054 25.2 6.0 43 374-417 21-63 (171)
453 2wkj_A N-acetylneuraminate lya 21.5 5.1E+02 0.017 24.3 11.6 75 167-250 39-113 (303)
454 3i4p_A Transcriptional regulat 21.5 1.4E+02 0.0048 25.2 5.6 43 373-416 6-48 (162)
455 3tn4_A Phosphotriesterase; lac 21.3 5.7E+02 0.019 24.8 12.5 138 91-249 153-297 (360)
456 3i4e_A Isocitrate lyase; struc 21.3 2.5E+02 0.0085 28.4 8.0 65 115-186 284-358 (439)
457 4ham_A LMO2241 protein; struct 21.3 2E+02 0.007 23.3 6.5 35 386-421 40-74 (134)
458 2ek5_A Predicted transcription 21.3 2.2E+02 0.0074 23.2 6.5 35 386-421 30-64 (129)
459 3otr_A Enolase; structural gen 21.1 3.5E+02 0.012 27.4 9.1 105 127-247 280-405 (452)
460 1o5k_A DHDPS, dihydrodipicolin 21.0 3.9E+02 0.013 25.2 9.3 52 198-251 93-145 (306)
461 2jep_A Xyloglucanase; family 5 20.9 1.6E+02 0.0054 28.7 6.6 121 160-293 69-215 (395)
462 2ze3_A DFA0005; organic waste 20.9 4.2E+02 0.014 24.7 9.2 119 158-293 21-144 (275)
463 2cg4_A Regulatory protein ASNC 20.8 1.4E+02 0.0047 24.8 5.4 43 374-417 12-54 (152)
464 2v9v_A Selenocysteine-specific 20.7 1.6E+02 0.0056 23.7 5.7 39 381-419 84-123 (135)
465 2dbb_A Putative HTH-type trans 20.6 1.4E+02 0.0048 24.7 5.3 43 374-417 13-55 (151)
466 2jbm_A Nicotinate-nucleotide p 20.6 56 0.0019 31.3 3.1 56 115-181 218-273 (299)
467 3eol_A Isocitrate lyase; seatt 20.6 2.3E+02 0.0077 28.6 7.5 65 115-186 279-353 (433)
468 2rfg_A Dihydrodipicolinate syn 20.5 3.9E+02 0.013 25.1 9.1 28 220-247 72-99 (297)
469 2wqp_A Polysialic acid capsule 20.5 4.8E+02 0.017 25.3 9.8 87 128-244 88-175 (349)
470 2dsk_A Chitinase; catalytic do 20.5 3.7E+02 0.013 25.7 8.9 86 163-255 64-151 (311)
471 1pz1_A GSP69, general stress p 20.4 2.5E+02 0.0087 26.7 7.9 59 226-302 97-158 (333)
472 4dpp_A DHDPS 2, dihydrodipicol 20.3 5.6E+02 0.019 24.9 10.3 30 220-249 131-160 (360)
473 2nuw_A 2-keto-3-deoxygluconate 20.3 5.2E+02 0.018 24.0 11.3 71 167-249 27-97 (288)
474 2y5s_A DHPS, dihydropteroate s 20.2 2.1E+02 0.0071 27.2 7.0 23 164-186 50-72 (294)
475 3lmz_A Putative sugar isomeras 20.1 1.5E+02 0.0051 26.7 5.9 86 115-221 44-134 (257)
476 4f9d_A Poly-beta-1,6-N-acetyl- 20.0 80 0.0027 33.6 4.3 155 134-297 194-362 (618)
477 3aml_A OS06G0726400 protein; s 20.0 72 0.0025 34.8 4.1 62 164-226 206-277 (755)
No 1
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=100.00 E-value=8e-74 Score=602.45 Aligned_cols=381 Identities=21% Similarity=0.390 Sum_probs=340.4
Q ss_pred CCCCeEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCC
Q 012112 50 QLSPTSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVP 129 (471)
Q Consensus 50 ~~~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~ 129 (471)
|..++++|||||||+.+|.||++++.... ....+.+|+++|++||+.....+. ...+.+||||||||++++
T Consensus 49 p~~~~~lYihIpfC~~~C~yC~~~~~~~~--------~~~~~~~~~~~l~~Ei~~~~~~~~-~~~i~~i~fgGGtpt~l~ 119 (457)
T 1olt_A 49 PERPLSLYVHIPFCHKLCYFCGCNKIVTR--------QQHKADQYLDALEQEIVHRAPLFA-GRHVSQLHWGGGTPTYLN 119 (457)
T ss_dssp TTSCEEEEEEECEESSCCTTCCSSCEECS--------CTHHHHHHHHHHHHHHHHHGGGGT-TCCEEEEEEEESCGGGSC
T ss_pred CCCceEEEEEcCCCCCCCCCCCCceeccC--------CcchHHHHHHHHHHHHHHHHHhcC-CCceEEEEEeCCCcccCC
Confidence 36679999999999999999999875321 234568899999999997665443 246899999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHH
Q 012112 130 PRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVK 209 (471)
Q Consensus 130 ~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~ 209 (471)
++.+.++++.+++.|++..+.+|++|+||+.++++.++.|+++|++|||+||||+++++|+.|+|.|+.+++.++++.++
T Consensus 120 ~~~l~~ll~~i~~~~~~~~~~eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~~i~R~~~~~~~~~ai~~~r 199 (457)
T 1olt_A 120 KAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAR 199 (457)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCcEEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 99999999999999887777899999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHH
Q 012112 210 LCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLS 289 (471)
Q Consensus 210 ~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~ 289 (471)
++||.+|++|+|+|+||||.++|.++++.+.+++|+||++|.|++.|||+..+.. .+...+|++++..+||..+.+.|.
T Consensus 200 ~~G~~~v~~dlI~GlPget~e~~~~tl~~~~~l~~~~i~~y~l~~~p~t~~~~~~-~~~~~lp~~~~~~~~~~~~~~~L~ 278 (457)
T 1olt_A 200 EIGFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRK-IKDADLPSPQQKLDILQETIAFLT 278 (457)
T ss_dssp HTTCCSCEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGGG-SCGGGSCCHHHHHHHHHHHHHHHH
T ss_pred HcCCCcEEEEEEcCCCCCCHHHHHHHHHHHHhcCcCEEEeecCcCCcCchhHhhc-cccCCCcCHHHHHHHHHHHHHHHH
Confidence 9999889999999999999999999999999999999999999999999887643 244567899999999999999999
Q ss_pred HCCCceeccccccCCCcc---hhhh-------hhhhc--CCCEEEEccCcccccCCeEEEcCCChHHHHHHHHHHhcCCC
Q 012112 290 SAGYRHYEISSYGEDGYE---CKHN-------LTYWK--NKPFYGFGLGSASYLGGLRFSRPRRMKEFVDYVQNLEAGLV 357 (471)
Q Consensus 290 ~~Gy~~yeis~fa~~g~~---~~hn-------~~yw~--~~~ylG~G~gA~s~~~~~r~~n~~~~~~y~~~~~~~~~g~~ 357 (471)
++||.+||+||||+||++ |+|| ..||. ..+|+|||+||+|++++.+++|++++++|++. +++|..
T Consensus 279 ~~Gy~~yeis~fa~~~~~~~~~~~~~~~~r~~~~Y~~~~~~~~lG~G~gA~s~~~~~~~~n~~~~~~Y~~~---i~~~~~ 355 (457)
T 1olt_A 279 QSGYQFIGMDHFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGDCYAQNQKELKQYYQQ---VDEQGN 355 (457)
T ss_dssp HTTCEEEETTEEECTTSHHHHHHHHTCCEECSSCEESCCSCEEEEESTTCEEEETTEEEEECSSHHHHHHH---HHHHSC
T ss_pred HCCCeEEEechhcCCCchhhhHHhhcchhhcccccccCCCCeEEEEccceeecCCCCEEEecCCHHHHHHH---HhcCCC
Confidence 999999999999999987 4554 67775 57999999999999999999999999988765 456888
Q ss_pred cccccccCCHhhHHHHHHHHhccccCCCCHhhHHHHhCCChHHHHH---HHHHHHHHCCCEEEecCcccchhhhhhhhhh
Q 012112 358 DCWGNNHIDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLC---KAYKPYIESGHVICLDEWRRAMNIEEFNSLL 434 (471)
Q Consensus 358 ~~~~~~~l~~~~~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~---~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~ 434 (471)
|+...+.++.++++.|.+|++||+..|||++.|+++||.++.+.+. +.++.++++||++.++ +
T Consensus 356 ~~~~~~~l~~~~~~~~~~~~~Lr~~~g~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~gll~~~~-~------------- 421 (457)
T 1olt_A 356 ALWRGIALTRDDCIRRDVIKSLICNFRLDYSPIEQQWDLLFADYFAEDLKLLAPLAKDGLVDVDE-K------------- 421 (457)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHTHHHHHHHHHHHHTTSEEECS-S-------------
T ss_pred ceeeeeeCCHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEC-C-------------
Confidence 8866678999999999999999999999999999999999877776 4478899999998643 2
Q ss_pred hhhhhcccccceeeecCchhhchHHHHHHHHHhcc
Q 012112 435 LDETKIGNRLAYFRLSDPEGFLLSNELISHAFGVI 469 (471)
Q Consensus 435 ~~~~~~~~~~~~~~lt~~~G~~~~n~i~~~~~~~~ 469 (471)
+|+|| ++|++++|.|++.|...+
T Consensus 422 -----------~~~lT-~~G~~~~~~i~~~f~~~~ 444 (457)
T 1olt_A 422 -----------GIQVT-AKGRLLIRNICMCFDTYL 444 (457)
T ss_dssp -----------EEEEC-TTTGGGHHHHHHTTCSCC
T ss_pred -----------EEEEC-HhhHHHHHHHHHHHHHHH
Confidence 47997 999999999999987654
No 2
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=99.97 E-value=3.7e-31 Score=270.62 Aligned_cols=259 Identities=14% Similarity=0.132 Sum_probs=205.3
Q ss_pred EEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCC--CCCCCHHH
Q 012112 55 SAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGT--PSLVPPRF 132 (471)
Q Consensus 55 ~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGT--ps~l~~~~ 132 (471)
.+||+.++|+.+|.||+|+....... ........+.++++++.... ..++.|+||||+ |+.++.+.
T Consensus 68 ~i~i~t~~C~~~C~yC~~~~~~~~~~-------~~~~~~s~eei~~~~~~~~~-----~g~~~i~~~gg~~~p~~~~~~~ 135 (369)
T 1r30_A 68 LLSIKTGACPEDCKYCPQSSRYKTGL-------EAERLMEVEQVLESARKAKA-----AGSTRFCMGAAWKNPHERDMPY 135 (369)
T ss_dssp EEEEECSCBSSCCSSCSCBTTSCTTC-------CCCCCCCHHHHHHHHHHHHH-----TTCSEEEEEECCSSCCTTTHHH
T ss_pred EEEEECCCCcccCccCCCCCcCCCCC-------cccccCCHHHHHHHHHHHHH-----cCCcEEEEEeCCCCCCcCCHHH
Confidence 47778899999999999976421100 00111124556666654432 136789998876 88788899
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 012112 133 VSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCG 212 (471)
Q Consensus 133 l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G 212 (471)
+.++++.+++. +.+++ ++++.++++.++.|+++|++++++|+|| ++++++.++|.++.+++.++++.++++|
T Consensus 136 l~~ll~~ik~~-----g~~i~--~t~G~l~~e~l~~L~~aGvd~v~i~les-~~e~~~~i~~~~~~~~~l~~i~~a~~~G 207 (369)
T 1r30_A 136 LEQMVQGVKAM-----GLEAC--MTLGTLSESQAQRLANAGLDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDAG 207 (369)
T ss_dssp HHHHHHHHHHT-----TSEEE--EECSSCCHHHHHHHHHHCCCEEECCCBS-CHHHHHHHCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-----CCeEE--EecCCCCHHHHHHHHHCCCCEEeecCcC-CHHHHHHhCCCCCHHHHHHHHHHHHHcC
Confidence 99999999874 24666 5889999999999999999999999999 9999999999999999999999999999
Q ss_pred CCeeEeeeecCCCCCCHHHHHHHHHHHHhCC--CCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 012112 213 VENWSLDLISSLPHQTPQMWEESLRRTVGAQ--PKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSS 290 (471)
Q Consensus 213 ~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~--p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~ 290 (471)
+ +|++++|+|+ |||.+++.++++++.+++ |++|+++.|.+.|||++++. +.++.++..+++..++..|..
T Consensus 208 i-~v~~~~I~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~~gT~l~~~------~~~~~~~~~~~~~~~r~~l~~ 279 (369)
T 1r30_A 208 I-KVCSGGIVGL-GETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADN------DDVDAFDFIRTIAVARIMMPT 279 (369)
T ss_dssp C-EEECCEEECS-SCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSC------CCCCHHHHHHHHHHHHHHCTT
T ss_pred C-eeeeeeEeeC-CCCHHHHHHHHHHHHhhcCCCCEEEeeeeeecCCCcCCCC------CCCCHHHHHHHHHHHHHhCCC
Confidence 9 5999999999 999999999999999998 89999999999999998753 568889999999999988866
Q ss_pred CCCceeccccccCCCcchhhhhhhhcC----CCEEEEccCcccccCCeEEEcCC--ChHHHHHHHHHHhcCCCcc
Q 012112 291 AGYRHYEISSYGEDGYECKHNLTYWKN----KPFYGFGLGSASYLGGLRFSRPR--RMKEFVDYVQNLEAGLVDC 359 (471)
Q Consensus 291 ~Gy~~yeis~fa~~g~~~~hn~~yw~~----~~ylG~G~gA~s~~~~~r~~n~~--~~~~y~~~~~~~~~g~~~~ 359 (471)
.+. |+..||.+ .+++|||+||.|.+.|.++.+.. +.++|.+.++. .|..|.
T Consensus 280 ~~i----------------~i~~~~~~l~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~--~g~~~~ 336 (369)
T 1r30_A 280 SYV----------------RLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRK--LGLNPQ 336 (369)
T ss_dssp SEE----------------EEESSGGGSCHHHHHHHHHHTCCEEECSSBSSSSBCCCHHHHHHHHHH--TTCCSC
T ss_pred Cce----------------EeecchhhcChHHHHHHhhCCCceEEeCCeeeCCCCCCHHHHHHHHHH--cCCCee
Confidence 532 23345543 46789999999998888776654 34666665543 455544
No 3
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=99.96 E-value=2.2e-28 Score=243.70 Aligned_cols=212 Identities=17% Similarity=0.213 Sum_probs=150.2
Q ss_pred CCeEEEEec-cCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCC-
Q 012112 52 SPTSAYIHL-PFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVP- 129 (471)
Q Consensus 52 ~~~~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~- 129 (471)
++..+||+| +.|+++|+||.++... | ..+.++++.+++|++.+.+. +++.|.|.|++++...
T Consensus 2 ~~~~~~v~is~GC~~~C~fC~~~~~~-g----------~~r~r~~e~i~~ei~~l~~~-----G~~ei~l~g~~~~~yG~ 65 (304)
T 2qgq_A 2 ERPYAYVKISDGCDRGCTFCSIPSFK-G----------SLRSRSIEDITREVEDLLKE-----GKKEIILVAQDTTSYGI 65 (304)
T ss_dssp CCSEEEEESBCCC--------------C----------CCCBCCHHHHHHHHHHHHHT-----TCCEEEEECTTGGGTTH
T ss_pred CCEEEEEEECCCCCCcCccCCccccC-C----------CceeeCHHHHHHHHHHHHHC-----CCcEEEEEeEcccccCC
Confidence 457899999 6899999999987653 1 12345678899999876542 2566777665554432
Q ss_pred ----HHHHHHHHHHHHHHcCCCCCcEEEE-EecCCCCCHHHHHHHHHCC--CCEEEEccCCCCHHHHHHcCCCCCHHHHH
Q 012112 130 ----PRFVSSILDTLTDKFGLSLDAEISM-EMDPGTFDARKMEELMDLG--VNRVSLGVQAFQDELLKSCGRAHGLKEVY 202 (471)
Q Consensus 130 ----~~~l~~ll~~l~~~~~l~~~~eiti-E~~P~~l~~e~l~~l~~~G--vnrvsiGvQS~~d~~L~~l~R~~t~~~~~ 202 (471)
...+.+|++.+++..++. .+.+ ++||..++++.++.|+++| +++|++|+||+++++|+.|+|+++.+++.
T Consensus 66 ~~~~~~~l~~Ll~~l~~~~gi~---~ir~~~~~p~~l~~e~l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~r~~t~e~~~ 142 (304)
T 2qgq_A 66 DLYRKQALPDLLRRLNSLNGEF---WIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELK 142 (304)
T ss_dssp HHHSSCCHHHHHHHHHTSSSSC---EEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHTTCCSCHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCc---EEEEeeeecccCCHHHHHHHHhCCCCccEEEEecccCCHHHHHHhCCCCCHHHHH
Confidence 246888899887753331 3444 5799999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHH--cCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHH
Q 012112 203 EAIEIVKL--CGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANF 280 (471)
Q Consensus 203 ~ai~~~~~--~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~ 280 (471)
++++.+++ .|+. +++|+|+|+||||.+++.++++++.+++++++++|.+++.|||+++++. + .++++...+.
T Consensus 143 ~~i~~l~~~~~gi~-i~~~~IvG~PgEt~ed~~~t~~~l~~l~~~~v~~~~~~p~pgT~~~~~~--~---~v~~~~~~~r 216 (304)
T 2qgq_A 143 KMLSSIRERFPDAV-LRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLK--E---KVDPEMAKRR 216 (304)
T ss_dssp HHHHHHHHHCTTCE-EEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC----------------CCCHHHHHHH
T ss_pred HHHHHHHhhCCCCE-EEEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeeCCCCChhHhCc--C---CCCHHHHHHH
Confidence 99999999 5885 8999999999999999999999999999999999999999999998752 1 2455555555
Q ss_pred HHHHHHHH
Q 012112 281 YRMASSML 288 (471)
Q Consensus 281 ~~~~~~~L 288 (471)
+....+..
T Consensus 217 ~~~l~~~~ 224 (304)
T 2qgq_A 217 QEELLLLQ 224 (304)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544433
No 4
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=99.91 E-value=2.7e-24 Score=218.07 Aligned_cols=211 Identities=15% Similarity=0.221 Sum_probs=170.5
Q ss_pred CCeEEEEeccC---CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCC-CCC
Q 012112 52 SPTSAYIHLPF---CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGT-PSL 127 (471)
Q Consensus 52 ~~~~lYiHIPF---C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGT-ps~ 127 (471)
....++.+|++ |+.+|.||.|+... +. .. . ....+.++++++.... .++..|+|.||. |.+
T Consensus 57 ~~v~~~~~i~~t~~C~~~C~fC~~~~~~-~~-------~~-~-~ls~eei~~~~~~~~~-----~G~~~i~l~gGe~p~~ 121 (350)
T 3t7v_A 57 NRVFLNCFIYFSTYCKNQCSFCYYNCRN-EI-------NR-Y-RLTMEEIKETCKTLKG-----AGFHMVDLTMGEDPYY 121 (350)
T ss_dssp TEEEEEEEEEEECCCCCCCTTCTTCTTS-CC-------CC-C-BCCHHHHHHHHHHHTT-----SCCSEEEEEECCCHHH
T ss_pred CEEEEEEeeecCCCcCCCCCcCCCcCcC-CC-------Cc-e-eCCHHHHHHHHHHHHH-----CCCCEEEEeeCCCCcc
Confidence 34566777777 99999999997543 11 00 0 1245677777776543 236778776665 754
Q ss_pred C-CHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHH
Q 012112 128 V-PPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIE 206 (471)
Q Consensus 128 l-~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~ 206 (471)
. +.+.+.++++.+++.+++ .++++|+.++++.++.|+++|++++++|+||+++++++.+++.++.+++.++++
T Consensus 122 ~~~~~~~~~l~~~ik~~~~i------~i~~s~g~~~~e~l~~L~~aG~~~i~i~lEt~~~~~~~~i~~~~~~~~~l~~i~ 195 (350)
T 3t7v_A 122 YEDPNRFVELVQIVKEELGL------PIMISPGLMDNATLLKAREKGANFLALYQETYDTELYRKLRVGQSFDGRVNARR 195 (350)
T ss_dssp HHSTHHHHHHHHHHHHHHCS------CEEEECSSCCHHHHHHHHHTTEEEEECCCBCSCHHHHHHHSTTCCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhhcCc------eEEEeCCCCCHHHHHHHHHcCCCEEEEeeecCCHHHHHHhCCCCCHHHHHHHHH
Confidence 3 467889999999887653 345689999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHH
Q 012112 207 IVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASS 286 (471)
Q Consensus 207 ~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~ 286 (471)
.++++|+. +++++|+|+ |||.+++.++++++.++++++++++++.+.|||++++. +.++.++..++...++.
T Consensus 196 ~a~~~Gi~-v~~~~i~Gl-get~e~~~~~l~~l~~l~~~~v~~~~f~p~~gT~l~~~------~~~~~~e~l~~ia~~Rl 267 (350)
T 3t7v_A 196 FAKQQGYC-VEDGILTGV-GNDIESTILSLRGMSTNDPDMVRVMTFLPQEGTPLEGF------RDKSNLSELKIISVLRL 267 (350)
T ss_dssp HHHHHTCE-EEEEEEESS-SCCHHHHHHHHHHHHHTCCSEEEEEECCCCTTSTTTTC------CCCCCCCHHHHHHHHHH
T ss_pred HHHHcCCe-EccceEeec-CCCHHHHHHHHHHHHhCCCCEEEecceeeCCCCcCccC------CCCChHHHHHHHHHHHH
Confidence 99999997 999999999 99999999999999999999999999999999999764 23444556677777777
Q ss_pred HHHHC
Q 012112 287 MLSSA 291 (471)
Q Consensus 287 ~L~~~ 291 (471)
.|...
T Consensus 268 ~lp~~ 272 (350)
T 3t7v_A 268 MFPKR 272 (350)
T ss_dssp HSTTS
T ss_pred hCCCc
Confidence 76553
No 5
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=99.90 E-value=5.4e-23 Score=207.95 Aligned_cols=202 Identities=14% Similarity=0.155 Sum_probs=164.8
Q ss_pred cCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHH
Q 012112 61 PFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTL 140 (471)
Q Consensus 61 PFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l 140 (471)
..|+.+|.||.+....... .... ...+.++++++..... ++..|+|+||.+..++.+.+.++++.+
T Consensus 61 ~~C~~~C~fC~~~~~~~~~------~~~~---ls~eei~~~i~~~~~~-----g~~~i~~~gGe~p~~~~~~~~~li~~i 126 (348)
T 3iix_A 61 NVCRKNCLYCGLRRDNKNL------KRYR---MTPEEIVERARLAVQF-----GAKTIVLQSGEDPYXMPDVISDIVKEI 126 (348)
T ss_dssp CCCSCCCTTCTTCTTCCSS------CCCB---CCHHHHHHHHHHHHHT-----TCSEEEEEESCCGGGTTHHHHHHHHHH
T ss_pred CCcCCcCccCCCCCCCCCc------Ccee---CCHHHHHHHHHHHHHC-----CCCEEEEEeCCCCCccHHHHHHHHHHH
Confidence 4499999999987642111 0000 1245666666654332 367889999995556778899999999
Q ss_pred HHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeee
Q 012112 141 TDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDL 220 (471)
Q Consensus 141 ~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~Dl 220 (471)
++. + +.+.++++.++++.++.|+++|++++++|+||+++++++.+++.++.+++.++++.++++|+. +++.+
T Consensus 127 ~~~-----~--~~i~~s~g~l~~e~l~~L~~ag~~~v~i~let~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~ 198 (348)
T 3iix_A 127 KKM-----G--VAVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYE-TGAGS 198 (348)
T ss_dssp HTT-----S--CEEEEECCCCCHHHHHHHHHHTCCEEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCE-EEECB
T ss_pred Hhc-----C--ceEEEecCCCCHHHHHHHHHhCCCEEeeeeeeCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCe-eccce
Confidence 875 2 344478889999999999999999999999999999999999999999999999999999996 99999
Q ss_pred ecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 012112 221 ISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSS 290 (471)
Q Consensus 221 I~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~ 290 (471)
|+|+||||.+++.++++++.+++++++.++++.+.|||++++. +.++.++..++...++..+..
T Consensus 199 i~G~p~et~e~~~~~~~~l~~l~~~~i~i~~~~p~~gt~l~~~------~~~~~~e~~~~~a~~R~~lp~ 262 (348)
T 3iix_A 199 MVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANE------KKGDFTLTLKMVALTRILLPD 262 (348)
T ss_dssp EESCTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTSTTTTS------CCCCHHHHHHHHHHHHHHSTT
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCEEeeeeeecCCCCCcccC------CCCCHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999998763 345677777777777666544
No 6
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=99.76 E-value=1.3e-17 Score=158.97 Aligned_cols=216 Identities=14% Similarity=0.161 Sum_probs=156.6
Q ss_pred eEEEEeccCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHH
Q 012112 54 TSAYIHLPFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFV 133 (471)
Q Consensus 54 ~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l 133 (471)
..+.+...-|+.+|.||......... .. ....++.++++++.....+ +..+..|.|+||.|++ .++.+
T Consensus 20 ~~~~i~t~~Cn~~C~~C~~~~~~~~~-------~~--~~~~~~~i~~~i~~~~~~~--~~~~~~i~~~GGEP~l-~~~~l 87 (245)
T 3c8f_A 20 IRFITFFQGCLMRCLYCHNRDTWDTH-------GG--KEVTVEDLMKEVVTYRHFM--NASGGGVTASGGEAIL-QAEFV 87 (245)
T ss_dssp EEEEEEESCCSCCCTTCSCGGGCCTT-------CS--EEECHHHHHHHHGGGHHHH--TSTTCEEEEEESCGGG-GHHHH
T ss_pred cEEEEEeCCCCCCCCCCCCchhcccc-------cC--ccCCHHHHHHHHHHhhhhh--cCCCCeEEEECCCcCC-CHHHH
Confidence 44555566699999999876432110 00 0112456667776543221 1235788999999986 77778
Q ss_pred HHHHHHHHHHcCCCCCcEEEEEecCCCC--CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 012112 134 SSILDTLTDKFGLSLDAEISMEMDPGTF--DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLC 211 (471)
Q Consensus 134 ~~ll~~l~~~~~l~~~~eitiE~~P~~l--~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~ 211 (471)
.++++.+++. + ..+++.+|. .+ +.+.++.|.+. +++|++++||+++++++.+++.+ .+++.++++.++++
T Consensus 88 ~~l~~~~~~~-~----~~i~i~Tng-~~~~~~~~~~~l~~~-~~~v~isld~~~~~~~~~~~~~~-~~~~~~~i~~l~~~ 159 (245)
T 3c8f_A 88 RDWFRACKKE-G----IHTCLDTNG-FVRRYDPVIDELLEV-TDLVMLDLKQMNDEIHQNLVGVS-NHRTLEFAKYLANK 159 (245)
T ss_dssp HHHHHHHHTT-T----CCEEEEECC-CCCCCCHHHHHHHHT-CSEEEEECCCSSHHHHHHHHSSC-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-C----CcEEEEeCC-CcCcCHHHHHHHHHh-CCEEEEeCCCCCHHHhhhccCCC-HHHHHHHHHHHHhc
Confidence 9999999864 3 468999996 55 78889999988 89999999999999999996644 59999999999999
Q ss_pred CCCeeEeeeecCCCC--CCHHHHHHHHHHHHhCCC-CcEEEEeccccCCCh---hhhcccCCCCCCCCHHHHHHHHHHHH
Q 012112 212 GVENWSLDLISSLPH--QTPQMWEESLRRTVGAQP-KHVSVYDLQVEQGTK---FGILYTPGEFPLPTETQSANFYRMAS 285 (471)
Q Consensus 212 G~~~v~~DlI~GlPg--qT~e~~~~~l~~~~~l~p-~his~y~l~~~pgT~---l~~~~~~g~~~~p~~~~~~~~~~~~~ 285 (471)
|+. +.+.+++ +|| ++.+++.+.++++.++++ ..+.+.++.+.+++. +.+.+..+..+.|+.++..+ +.
T Consensus 160 g~~-v~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~ 233 (245)
T 3c8f_A 160 NVK-VWIRYVV-VPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMER----VK 233 (245)
T ss_dssp TCC-EEEEEEE-CTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSHHHHHHTTCCCTTTTCCCCCHHHHHH----HH
T ss_pred CCE-EEEEEee-cCCCCCCHHHHHHHHHHHHhcCCCceeEEEeccccChhHHHhhCcccccccCCCCCHHHHHH----HH
Confidence 996 7776555 565 678999999999999996 888888887766543 23333445556777766444 45
Q ss_pred HHHHHCCCce
Q 012112 286 SMLSSAGYRH 295 (471)
Q Consensus 286 ~~L~~~Gy~~ 295 (471)
+.+.++||..
T Consensus 234 ~~~~~~G~~v 243 (245)
T 3c8f_A 234 GILEQYGHKV 243 (245)
T ss_dssp HHHHTTTCCB
T ss_pred HHHHhcCCee
Confidence 5677889864
No 7
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.67 E-value=8.9e-16 Score=154.84 Aligned_cols=214 Identities=14% Similarity=0.192 Sum_probs=150.1
Q ss_pred CCCcCCcCCCCCccc-CCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCC-----------CCCeeEEEE-cCCCCCCC
Q 012112 62 FCRKRCHYCDFPIVA-LGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKT-----------SPPLETVFF-GGGTPSLV 128 (471)
Q Consensus 62 FC~~~C~yC~f~~~~-~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~-----------~~~v~~i~f-GGGTps~l 128 (471)
.|+.+|.||..+... .+.... ......+..++.+.+..+.....+.. ...+..|.| |||.|.+.
T Consensus 80 gCnl~C~fC~~~~~~~~~~~~~---~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~sggGEPll~ 156 (342)
T 2yx0_A 80 WCTHNCIFCWRPMENFLGTELP---QPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEPMLY 156 (342)
T ss_dssp CCSBCCTTCCCSSSSCSCSSCC---SSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSSSCGGGS
T ss_pred hhhCcCcccCCCCCCCcccccc---cCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEEcCCCcccch
Confidence 599999999875331 000000 11122345555555544332211100 023678999 69999875
Q ss_pred CHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCC--CCEEEEccCCCCHHHHHHcCC---CCCHHHHHH
Q 012112 129 PPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLG--VNRVSLGVQAFQDELLKSCGR---AHGLKEVYE 203 (471)
Q Consensus 129 ~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~G--vnrvsiGvQS~~d~~L~~l~R---~~t~~~~~~ 203 (471)
+ .+.++++.+++. +..+++.+|... ++.++.|+++| ++++++++++.+++.++.+.+ ..+.+++.+
T Consensus 157 -~-~l~~ll~~~~~~-----g~~i~l~TNG~~--~e~l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~~~~~~~~~~ 227 (342)
T 2yx0_A 157 -P-YMGDLVEEFHKR-----GFTTFIVTNGTI--PERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILR 227 (342)
T ss_dssp -T-THHHHHHHHHHT-----TCEEEEEECSCC--HHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHHHHHH
T ss_pred -h-hHHHHHHHHHHC-----CCcEEEEcCCCc--HHHHHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCcccHHHHHHH
Confidence 4 788999988874 348999999754 88999999988 999999999999999999987 457999999
Q ss_pred HHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHH
Q 012112 204 AIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRM 283 (471)
Q Consensus 204 ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~ 283 (471)
+++.++++|+. +.+.+++ +||++.+++.+.++++.++++++|++.++.+.++++ ... +....|+.++..+++..
T Consensus 228 ~i~~l~~~g~~-v~i~~~l-~~g~n~~~~~~l~~~l~~~~~~~i~l~~~~~~~~~~-~~l---~~~~~~~~e~~~~~~~~ 301 (342)
T 2yx0_A 228 FLELMRDLPTR-TVVRLTL-VKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSR-NRL---TINNMPSHQDIREFAEA 301 (342)
T ss_dssp HHHHHTTCSSE-EEEEEEE-CTTTTCCCHHHHHHHHHHHCCSEEEEEECC-------CCC---CGGGSCCHHHHHHHHHH
T ss_pred HHHHHHhCCCC-EEEEEEE-ECCccHHHHHHHHHHHHHcCCCEEEEEeeeecCCCc-ccc---cccCCCCHHHHHHHHHH
Confidence 99999999986 8888888 799998889999999999999999987777655443 111 12345777777777766
Q ss_pred HHHHHHHCCCceecc
Q 012112 284 ASSMLSSAGYRHYEI 298 (471)
Q Consensus 284 ~~~~L~~~Gy~~yei 298 (471)
+.+.| ..|+|
T Consensus 302 l~~~l-----~~~~I 311 (342)
T 2yx0_A 302 LVKHL-----PGYHI 311 (342)
T ss_dssp HHTTC-----TTEEE
T ss_pred HHHhc-----cCCce
Confidence 65543 34666
No 8
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=99.61 E-value=1.6e-14 Score=145.36 Aligned_cols=189 Identities=13% Similarity=0.182 Sum_probs=138.8
Q ss_pred EEEEeccC-CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHH
Q 012112 55 SAYIHLPF-CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFV 133 (471)
Q Consensus 55 ~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l 133 (471)
.+.|++.. |+.+|.||.............. ........-+..+++++.. ..+..|.|.||.|.+.+ .+
T Consensus 15 ~l~i~~T~~CNl~C~yC~~~~~~~~~~~~~~-~~~~ls~e~i~~~i~~~~~--------~g~~~i~~tGGEPll~~--~l 83 (340)
T 1tv8_A 15 DLRLSVTDRCNFRCDYCMPKEVFGDDFVFLP-KNELLTFDEMARIAKVYAE--------LGVKKIRITGGEPLMRR--DL 83 (340)
T ss_dssp EEEEECCSCCSCCCTTTSCTTTSSTTCCCCC-GGGSCCHHHHHHHHHHHHH--------TTCCEEEEESSCGGGST--TH
T ss_pred eEEEEeCCCcCCcCCCCCcCcccCCCcccCC-ccCCCCHHHHHHHHHHHHH--------CCCCEEEEeCCCccchh--hH
Confidence 45555554 9999999976541100000000 0011112223334444432 12677899999998643 46
Q ss_pred HHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCC-CHHHHHHHHHHHHHcC
Q 012112 134 SSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAH-GLKEVYEAIEIVKLCG 212 (471)
Q Consensus 134 ~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~-t~~~~~~ai~~~~~~G 212 (471)
.++++.+++... ...+++.+|...++ +.++.|+++|+++|+++++|.+++.++.+++.. +.+++.++++.++++|
T Consensus 84 ~~li~~~~~~~~---~~~i~i~TNG~ll~-~~~~~L~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~~v~~~i~~l~~~g 159 (340)
T 1tv8_A 84 DVLIAKLNQIDG---IEDIGLTTNGLLLK-KHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIG 159 (340)
T ss_dssp HHHHHHHTTCTT---CCEEEEEECSTTHH-HHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCC---CCeEEEEeCccchH-HHHHHHHHCCCCEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 788888776422 22899999986654 589999999999999999999999999998888 9999999999999999
Q ss_pred CCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhh
Q 012112 213 VENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFG 261 (471)
Q Consensus 213 ~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~ 261 (471)
+ .|.+.+++ +||++.+++.+.++++.+++++ +.+..+++.++++.+
T Consensus 160 ~-~v~i~~vv-~~g~n~~ei~~~~~~~~~~g~~-~~~i~~~p~~~~~~~ 205 (340)
T 1tv8_A 160 L-NVKVNVVI-QKGINDDQIIPMLEYFKDKHIE-IRFIEFMDVGNDNGW 205 (340)
T ss_dssp C-EEEEEEEE-CTTTTGGGHHHHHHHHHHTTCC-EEEEECCCBCSSSSB
T ss_pred C-CEEEEEEE-eCCCCHHHHHHHHHHHHhcCCe-EEEEEeeEcCCCccc
Confidence 9 58888877 8999999999999999999996 888888888877643
No 9
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=99.27 E-value=1.7e-11 Score=121.57 Aligned_cols=221 Identities=9% Similarity=0.102 Sum_probs=126.6
Q ss_pred CCeEEEEecc--CCCcCCcCCCCCcccC-CCC-CCCCCCCchhHHHHHHHHHHHHHhccCCCC------------CCCCe
Q 012112 52 SPTSAYIHLP--FCRKRCHYCDFPIVAL-GSS-PTQTNDDDPRVSNYIQLLCREIIATKPGHK------------TSPPL 115 (471)
Q Consensus 52 ~~~~lYiHIP--FC~~~C~yC~f~~~~~-~~~-~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~------------~~~~v 115 (471)
.+..+-+.+. -|+.+|.||..+.... +.. ...........+..++.+.++++.....+. ....+
T Consensus 49 ~~~~l~i~~t~~~Cn~~C~fC~~~~~~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~ 128 (311)
T 2z2u_A 49 THRCIQCTPSVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEP 128 (311)
T ss_dssp GGGEEEEESCSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSC
T ss_pred CCCeEEeccChhHHhCcCcccCCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCC
Confidence 3445667776 4999999998553111 000 000000112234555555554432110000 01235
Q ss_pred eEEEEc-CCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC
Q 012112 116 ETVFFG-GGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGR 194 (471)
Q Consensus 116 ~~i~fG-GGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R 194 (471)
..|.|. ||.|.+ .+ .+.++++.+++. + ..+++.+|.. + ++.++ +.|+++|.+++++.+++..+.+.+
T Consensus 129 ~~i~~s~gGEPll-~~-~l~~li~~~~~~-g----~~~~l~TNG~-~-~~~l~---~L~~~~v~isld~~~~~~~~~i~~ 196 (311)
T 2z2u_A 129 KHVAISLSGEPTL-YP-YLDELIKIFHKN-G----FTTFVVSNGI-L-TDVIE---KIEPTQLYISLDAYDLDSYRRICG 196 (311)
T ss_dssp CEEEECSSSCGGG-ST-THHHHHHHHHHT-T----CEEEEEECSC-C-HHHHH---HCCCSEEEEECCCSSTTTC----C
T ss_pred CEEEEeCCcCccc-hh-hHHHHHHHHHHC-C----CcEEEECCCC-C-HHHHH---hCCCCEEEEEeecCCHHHHHHHhC
Confidence 677785 899987 43 588999988874 3 4788888853 3 55555 448999999999999999999988
Q ss_pred C--CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCC
Q 012112 195 A--HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLP 272 (471)
Q Consensus 195 ~--~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p 272 (471)
. ++.+++.++++.++++| . +.+..+ .+||.+. ++.+.++++.++++++|.+.++++.++++.. . +....|
T Consensus 197 ~~~~~~~~v~~~i~~l~~~g-~-v~i~~~-~~~g~n~-~~~~~~~~~~~~~~~~i~l~~~~p~g~~~~~-~---~~~~~~ 268 (311)
T 2z2u_A 197 GKKEYWESILNTLDILKEKK-R-TCIRTT-LIRGYND-DILKFVELYERADVHFIELKSYMHVGYSQKR-L---KKEDML 268 (311)
T ss_dssp CCHHHHHHHHHHHHHHTTSS-S-EEEEEE-ECTTTTC-CGGGTHHHHHHHTCSEEEEEECC----------------CCC
T ss_pred CccchHHHHHHHHHHHHhcC-C-EEEEEE-EECCcch-hHHHHHHHHHHcCCCEEEEEeeEEccccccc-c---ccccCC
Confidence 7 68999999999999998 4 666554 3577666 7888888999999999999999998877631 1 112456
Q ss_pred CHHHHHHHHHHHHHHHHHCCCce
Q 012112 273 TETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 273 ~~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
+.++..+....+.+ ..||..
T Consensus 269 ~~~e~~~~~~~l~~---~~g~~~ 288 (311)
T 2z2u_A 269 QHDEILKLAKMLDE---NSSYKL 288 (311)
T ss_dssp CHHHHHHHHHHHHT---SSSEEE
T ss_pred CHHHHHHHHHHHHH---hcCceE
Confidence 76665554443322 256543
No 10
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=99.21 E-value=1.6e-10 Score=119.38 Aligned_cols=177 Identities=17% Similarity=0.229 Sum_probs=124.8
Q ss_pred EEEec-cCCCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHH
Q 012112 56 AYIHL-PFCRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVS 134 (471)
Q Consensus 56 lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~ 134 (471)
+.+++ ..|+.+|.||......... .......-+..+++++.. . ..+..|.|.||.|.+.+.+.+.
T Consensus 117 v~l~vT~~Cnl~C~yC~~~~~~~~~-------~~~ls~eei~~~i~~i~~---~----~gi~~V~ltGGEPll~~d~~L~ 182 (416)
T 2a5h_A 117 VLLLITDMCSMYCRHCTRRRFAGQS-------DDSMPMERIDKAIDYIRN---T----PQVRDVLLSGGDALLVSDETLE 182 (416)
T ss_dssp EEEEEESCCSSCCTTCTTTTTTTSS-------SSBCCHHHHHHHHHHHHT---C----TTCCEEEEEESCTTSSCHHHHH
T ss_pred EEEecCCCccccCcCCCCcccCCCc-------cCCCCHHHHHHHHHHHHh---c----CCCcEEEEECCCCCCCCHHHHH
Confidence 44444 4499999999654322100 001112223334444432 1 2367799999999988877899
Q ss_pred HHHHHHHHHcCCCCCcEEEEEec-----CCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHH
Q 012112 135 SILDTLTDKFGLSLDAEISMEMD-----PGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVK 209 (471)
Q Consensus 135 ~ll~~l~~~~~l~~~~eitiE~~-----P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~ 209 (471)
++++.+++.-++ ..+++.+| |..+|++.++.|+++ .++.+++++.+++ .+ + +++.++++.++
T Consensus 183 ~il~~l~~~~~v---~~i~i~Tng~~~~p~~it~e~l~~L~~~--~~v~Isl~~~~~~---ei----~-~~v~~ai~~L~ 249 (416)
T 2a5h_A 183 YIIAKLREIPHV---EIVRIGSRTPVVLPQRITPELVNMLKKY--HPVWLNTHFNHPN---EI----T-EESTRACQLLA 249 (416)
T ss_dssp HHHHHHHTSTTC---CEEEEECSHHHHCGGGCCHHHHHHHGGG--CSEEEEECCCSGG---GC----C-HHHHHHHHHHH
T ss_pred HHHHHHHhcCCc---cEEEEEecccccccccCCHHHHHHHHhc--CcEEEEEecCCHH---HH----h-HHHHHHHHHHH
Confidence 999999874222 25777764 467899999999998 7899999998883 22 2 89999999999
Q ss_pred HcCCCeeEee--eecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhh
Q 012112 210 LCGVENWSLD--LISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFG 261 (471)
Q Consensus 210 ~~G~~~v~~D--lI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~ 261 (471)
++|+. +.+. ++-|+. ++.+++.+.++++.+++++...++.+.+.+||+.+
T Consensus 250 ~aGi~-v~i~~vll~GvN-d~~e~l~~l~~~l~~lgv~~~~i~~~~~~~g~~~~ 301 (416)
T 2a5h_A 250 DAGVP-LGNQSVLLRGVN-DCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHF 301 (416)
T ss_dssp HTTCC-EEEEEECCTTTT-CSHHHHHHHHHHHHHTTEEEEEEECCCCBTTCGGG
T ss_pred HcCCE-EEEEEEEECCCC-CCHHHHHHHHHHHHHcCCceEEEeecCCCCCcccc
Confidence 99996 5544 444664 78889999999999999887767766667788754
No 11
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=98.84 E-value=4.3e-08 Score=100.25 Aligned_cols=206 Identities=14% Similarity=0.258 Sum_probs=132.4
Q ss_pred CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCC-CCCCCeeEEEE-cCCCCCCCCHHHHHHHHHHH
Q 012112 63 CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGH-KTSPPLETVFF-GGGTPSLVPPRFVSSILDTL 140 (471)
Q Consensus 63 C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~-~~~~~v~~i~f-GGGTps~l~~~~l~~ll~~l 140 (471)
|+.+|.||.-.....+ ..-..+.-++.+..-...+.... ..+..+..|.| |||.|.+ ..+.+.++++.+
T Consensus 125 Cnl~C~fC~tg~~g~~--------r~Lt~eEIv~qv~~~~~~~~~~g~~gg~~i~~Ivf~GgGEPLl-n~d~v~~~i~~l 195 (404)
T 3rfa_A 125 CALECKFCSTAQQGFN--------RNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLL-NLNNVVPAMEIM 195 (404)
T ss_dssp CSSCCTTCGGGTTCEE--------EECCHHHHHHHHHHHHHHHCCHHHHSSCSCSEEEECSSSCGGG-CHHHHHHHHHHH
T ss_pred CCCcCCCCCCCCCCCC--------CcCCHHHHHHHHHHHHHHhhhcccccCCCccEEEEeCCCCccc-CHHHHHHHHHHH
Confidence 9999999976432111 01112333333322222221100 00234666666 5899975 778888999998
Q ss_pred HHHcCCC-CCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcC---CCCCHHHHHHHHH-HHHHcCC--
Q 012112 141 TDKFGLS-LDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCG---RAHGLKEVYEAIE-IVKLCGV-- 213 (471)
Q Consensus 141 ~~~~~l~-~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~---R~~t~~~~~~ai~-~~~~~G~-- 213 (471)
++..++. ....+++.+|- .+ +.++.|.+.+...+.+.+.+.+++..+.+. +..+.+++.++++ .+++.|.
T Consensus 196 k~~~Gl~~s~r~itlsTnG-~~--p~i~~L~~~~d~~LaiSLka~d~e~~~~i~pv~~~~~le~vl~ai~~~~~~~g~~~ 272 (404)
T 3rfa_A 196 LDDFGFGLSKRRVTLSTSG-VV--PALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQ 272 (404)
T ss_dssp HSTTTTCCCGGGEEEEESC-CH--HHHHHHHHHCCCEEEEECCCSSHHHHHHHSGGGGTSCHHHHHHHHHHHHHHCTTTT
T ss_pred HhhcCcCcCCCceEEECCC-cH--HHHHHHHHhhcceEEecccCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCCc
Confidence 8743331 12368888875 33 456777766767899999999999988865 5778999999994 5566676
Q ss_pred -C-eeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHC
Q 012112 214 -E-NWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSA 291 (471)
Q Consensus 214 -~-~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~ 291 (471)
. .++.-+|-|+ +.+.+++.+..+++..++. +|.+-+|.+.+++. +..|+.+...+ ..+.|.++
T Consensus 273 ~~V~ie~vLI~Gv-NDs~e~~~~La~ll~~l~~-~VnLIpynP~~~~~---------~~~ps~e~i~~----f~~iL~~~ 337 (404)
T 3rfa_A 273 GRVTIEYVMLDHV-NDGTEHAHQLAELLKDTPC-KINLIPWNPFPGAP---------YGRSSNSRIDR----FSKVLMSY 337 (404)
T ss_dssp TCEEEEEEEBTTT-TCSHHHHHHHHHHTTTSCE-EEEEEECCCCTTCC---------CCBCCHHHHHH----HHHHHHHT
T ss_pred ccEEEEEEEecCC-CCCHHHHHHHHHHHHcCCC-cEEEEeccCCCCCC---------CCCCCHHHHHH----HHHHHHHc
Confidence 3 2344455454 6789999999999988764 78888888766543 23466555443 44577888
Q ss_pred CCce
Q 012112 292 GYRH 295 (471)
Q Consensus 292 Gy~~ 295 (471)
|+..
T Consensus 338 Gi~v 341 (404)
T 3rfa_A 338 GFTT 341 (404)
T ss_dssp TCEE
T ss_pred CCcE
Confidence 9865
No 12
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=98.63 E-value=1.2e-06 Score=79.42 Aligned_cols=167 Identities=13% Similarity=0.212 Sum_probs=115.3
Q ss_pred eEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCC
Q 012112 116 ETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRA 195 (471)
Q Consensus 116 ~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~ 195 (471)
..|.|.||.|.+ .++.+.++++.+++. + ..+++.+|. +++++.++.+.+. ++.|.+.+.+++++.-+.+..
T Consensus 5 ~~v~~tGGEPll-~~~~~~~l~~~~~~~-g----~~~~l~TNG-~l~~~~~~~l~~~-~d~v~isld~~~~~~~~~~~g- 75 (182)
T 3can_A 5 GGVTFCGGEPLL-HPEFLIDILKRCGQQ-G----IHRAVDTTL-LARKETVDEVMRN-CELLLIDLKSMDSTVHQTFCD- 75 (182)
T ss_dssp CCEEECSSTGGG-SHHHHHHHHHHHHHT-T----CCEEEECTT-CCCHHHHHHHHHT-CSEEEEECCCSCHHHHHHHHS-
T ss_pred CEEEEEcccccC-CHHHHHHHHHHHHHC-C----CcEEEECCC-CCCHHHHHHHHhh-CCEEEEECCCCCHHHHHHHhC-
Confidence 347788999975 777778999988874 2 468999997 4789999999988 899999999999998877643
Q ss_pred CCHHHHHHHHHHHHHcCCCeeEeeeecCCCC--CCHHHHHHHHHHHHhC-CC-CcEEEEeccccCCChhhh---cccCCC
Q 012112 196 HGLKEVYEAIEIVKLCGVENWSLDLISSLPH--QTPQMWEESLRRTVGA-QP-KHVSVYDLQVEQGTKFGI---LYTPGE 268 (471)
Q Consensus 196 ~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg--qT~e~~~~~l~~~~~l-~p-~his~y~l~~~pgT~l~~---~~~~g~ 268 (471)
.+.+.+.++++.+++.|+. +.+-..+ .|| ++.+++.+.++++.++ ++ ..+.+.++.+........ .+.-..
T Consensus 76 ~~~~~i~~~i~~l~~~g~~-v~i~~~v-~~~~n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~p~g~~~~~~l~~~y~~~~ 153 (182)
T 3can_A 76 VPNELILKNIRRVAEADFP-YYIRIPL-IEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGKHAKLGSIYNPKG 153 (182)
T ss_dssp SCSHHHHHHHHHHHHTTCC-EEEEEEE-CBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC-----------------
T ss_pred CCHHHHHHHHHHHHhCCCe-EEEEEEE-ECCCCCCHHHHHHHHHHHHhCcCccceEEEecCcccCHHHHHHhCCcCcccC
Confidence 3468999999999999886 6555433 354 6889999999999999 88 889998887765444211 111122
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCce
Q 012112 269 FPLPTETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 269 ~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
.+.|+.++ +....+.+.+.+.|...
T Consensus 154 ~~~~~~e~--~~l~~~~~~~~~~g~~~ 178 (182)
T 3can_A 154 YKMQTPSE--EVQQQCIQILTDYGLKA 178 (182)
T ss_dssp -CCBCCCH--HHHHHHHHHHHHTTCCE
T ss_pred CCCCCHHH--HHHHHHHHHHHHcCCce
Confidence 33444433 00233445666777653
No 13
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*
Probab=97.43 E-value=0.00019 Score=72.24 Aligned_cols=160 Identities=10% Similarity=0.121 Sum_probs=94.8
Q ss_pred CCcCCcCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHH----HHHHHH
Q 012112 63 CRKRCHYCDFPIVALGSSPTQTNDDDPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRF----VSSILD 138 (471)
Q Consensus 63 C~~~C~yC~f~~~~~~~~~~~~~~~~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~----l~~ll~ 138 (471)
|++.|.||......... ... .-....+..++.+.++++... .....|.+|.-|-.+ +.+. ..++++
T Consensus 117 C~~~C~YCYl~~~~~~~-~~I--~v~vN~~eiL~~l~~~l~~~~------~~~~~i~~g~~TDpy-p~E~~~~ltr~~le 186 (368)
T 4fhd_A 117 CMGHCHYCYLQTTLGSK-PYI--RVYVNLDDIFAQAQKYINERA------PEITRFEAACTSDIV-GIDHLTHSLKKAIE 186 (368)
T ss_dssp CSCCCTTCTHHHHTTTC-CSE--EEECCHHHHHHHHHHHHHHHT------TSCEEEESCSSBCHH-HHHTTTCHHHHHHH
T ss_pred CCCCCceEeccccCCCC-CeE--EEecCHHHHHHHHHHHHhhcC------CCceEEEEEcCCCcc-hhhHHHhHHHHHHH
Confidence 99999999754332110 000 001224566666655555332 123455555544332 3332 334445
Q ss_pred HHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCC-CCHHHHHHHHHHHHHcCCCeeE
Q 012112 139 TLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRA-HGLKEVYEAIEIVKLCGVENWS 217 (471)
Q Consensus 139 ~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~-~t~~~~~~ai~~~~~~G~~~v~ 217 (471)
.+.+. ....+++-+--..++ .|..++..|-.+|++.+-+ +++.+.+-.+ -+.++-++|++.+.++|+. |.
T Consensus 187 ~l~~~----~~~~v~i~TKs~lid--~L~~l~~~~~v~V~~Sitt--~~l~r~~EP~aps~~~RL~Ai~~l~~aGip-v~ 257 (368)
T 4fhd_A 187 FIGAT----DYGRLRFVTKYEHVD--HLLDARHNGKTRFRFSINS--RYVINHFEPGTSSFDGRLAAARKVAGAGYK-LG 257 (368)
T ss_dssp HHHHC----SSEEEEEEESCCCCG--GGTTCCCTTCEEEEEEECC--HHHHHHHCTTSCCHHHHHHHHHHHHHTTCE-EE
T ss_pred HHHhC----CCceEEEEeCCcCHH--HHHhcCcCCceEEEEEEcC--HHHHHHcCCCCCCHHHHHHHHHHHHHCCCe-EE
Confidence 44442 234567766433443 3444544555567666644 7777777654 5899999999999999997 77
Q ss_pred eeeecCCCCCCH-HHHHHHHHHHHh
Q 012112 218 LDLISSLPHQTP-QMWEESLRRTVG 241 (471)
Q Consensus 218 ~DlI~GlPgqT~-e~~~~~l~~~~~ 241 (471)
+-+.-=+|+.+. +++.+.++.+.+
T Consensus 258 v~iaPIiP~~~~~e~y~~lle~l~~ 282 (368)
T 4fhd_A 258 FVVAPIYRHEGWERGYFELFQELAR 282 (368)
T ss_dssp EEEEEECCCTTHHHHHHHHHHHHHH
T ss_pred EEEeCcCCCCCCHHHHHHHHHHHHH
Confidence 666666888765 577888887665
No 14
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=95.65 E-value=0.11 Score=48.90 Aligned_cols=117 Identities=18% Similarity=0.137 Sum_probs=87.9
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec------CCCCCHHHHHHHHHCCCCEEEEccCCCCHHH
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMD------PGTFDARKMEELMDLGVNRVSLGVQAFQDEL 188 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~------P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~ 188 (471)
++.+-||+||.++.+.+.+++.++..+++ ++.+..-.. -...=++.++..++.|++.|.|.-=|.+
T Consensus 39 ID~lKfg~Gt~~l~~~~~l~eki~l~~~~-----gV~v~~GGTl~E~~~~qg~~~~yl~~~k~lGf~~iEiS~G~i~--- 110 (251)
T 1qwg_A 39 IDFVKFGWGTSAVIDRDVVKEKINYYKDW-----GIKVYPGGTLFEYAYSKGKFDEFLNECEKLGFEAVEISDGSSD--- 110 (251)
T ss_dssp CSEEEECTTGGGGSCHHHHHHHHHHHHTT-----TCEEEECHHHHHHHHHTTCHHHHHHHHHHHTCCEEEECCSSSC---
T ss_pred cceEEecCceeeecCHHHHHHHHHHHHHc-----CCeEECCcHHHHHHHHcCcHHHHHHHHHHcCCCEEEECCCccc---
Confidence 78899999999999999999999988864 223332210 0113468999999999999877665543
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCC--C----CCCHHHHHHHHHHHHhCCCCcEEE
Q 012112 189 LKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSL--P----HQTPQMWEESLRRTVGAQPKHVSV 249 (471)
Q Consensus 189 L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl--P----gqT~e~~~~~l~~~~~l~p~his~ 249 (471)
.+.++..+.|+.+++.||. |-..+ |- | -.+++.|.+.++..++.+.++|-+
T Consensus 111 -------l~~~~~~~~I~~~~~~G~~-v~~Ev--G~k~~~~~~~~~~~~~I~~~~~~LeAGA~~Vii 167 (251)
T 1qwg_A 111 -------ISLEERNNAIKRAKDNGFM-VLTEV--GKKMPDKDKQLTIDDRIKLINFDLDAGADYVII 167 (251)
T ss_dssp -------CCHHHHHHHHHHHHHTTCE-EEEEE--CCSSHHHHTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred -------CCHHHHHHHHHHHHHCCCE-Eeeec--cccCCcccCCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 4677888899999999997 43333 33 2 247899999999999999987744
No 15
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=94.09 E-value=0.21 Score=48.56 Aligned_cols=89 Identities=11% Similarity=0.037 Sum_probs=71.6
Q ss_pred CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeeEeeee--cCCCC---CCHHHHHH
Q 012112 162 DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAH--GLKEVYEAIEIVKLCGVENWSLDLI--SSLPH---QTPQMWEE 234 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~--t~~~~~~ai~~~~~~G~~~v~~DlI--~GlPg---qT~e~~~~ 234 (471)
+.+.++...++|++.|.+-+-+-+....+.+++.. ..+.+.++++.+++.|+. |.++++ +|-|. -+++.+.+
T Consensus 82 ~~~~i~~a~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~-v~~~l~~~~~~~~~~~~~~~~~~~ 160 (298)
T 2cw6_A 82 NLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANIS-VRGYVSCALGCPYEGKISPAKVAE 160 (298)
T ss_dssp SHHHHHHHHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCE-EEEEEETTTCBTTTBSCCHHHHHH
T ss_pred CHHhHHHHHHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEEEEEEeeCCcCCCCCHHHHHH
Confidence 57889999999999999977544445667787754 567888899999999997 888887 55564 36888999
Q ss_pred HHHHHHhCCCCcEEEEe
Q 012112 235 SLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 235 ~l~~~~~l~p~his~y~ 251 (471)
.++.+.+++++.|++-.
T Consensus 161 ~~~~~~~~Ga~~i~l~D 177 (298)
T 2cw6_A 161 VTKKFYSMGCYEISLGD 177 (298)
T ss_dssp HHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHcCCCEEEecC
Confidence 99999999999887763
No 16
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=92.97 E-value=0.24 Score=39.14 Aligned_cols=69 Identities=19% Similarity=0.131 Sum_probs=51.2
Q ss_pred HHhccccC-CCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchh
Q 012112 376 MLSFRTAR-GVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEG 454 (471)
Q Consensus 376 ~~~Lr~~~-gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G 454 (471)
+.-+.... ++...++++.+|.+....+...++.|++.|||.....+ .|.-.++|| ++|
T Consensus 21 L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~~~~d--------------------rR~~~~~LT-~~G 79 (95)
T 2pg4_A 21 LLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLS--------------------YRVKTLKLT-EKG 79 (95)
T ss_dssp HHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEE--------------------TTEEEEEEC-HHH
T ss_pred HHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCeecCCCC--------------------CCeEEEEEC-HhH
Confidence 33444444 79999999999998653267789999999999843222 233468997 999
Q ss_pred hchHHHHHHHH
Q 012112 455 FLLSNELISHA 465 (471)
Q Consensus 455 ~~~~n~i~~~~ 465 (471)
..+.+.+...+
T Consensus 80 ~~~~~~~~~~~ 90 (95)
T 2pg4_A 80 RRLAECLEKCR 90 (95)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998876654
No 17
>3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A
Probab=92.08 E-value=0.6 Score=47.29 Aligned_cols=120 Identities=17% Similarity=0.151 Sum_probs=80.9
Q ss_pred CCCHHHHHHHHHCCCC--EEEEccCCCCHHHHHHcCCC---CCHHHHHHHHHHHHHcCCCeeEeeeecCCCC--------
Q 012112 160 TFDARKMEELMDLGVN--RVSLGVQAFQDELLKSCGRA---HGLKEVYEAIEIVKLCGVENWSLDLISSLPH-------- 226 (471)
Q Consensus 160 ~l~~e~l~~l~~~Gvn--rvsiGvQS~~d~~L~~l~R~---~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg-------- 226 (471)
.++++.++.|+++|+| ||.|+-..+.+. -+.+ ...+.+.++|+.|+++|+. |-+|+- +.||
T Consensus 73 ~ite~D~~~ik~~G~N~VRipi~~~~~~~~----~~~py~~~~~~~ld~vV~~a~~~Gl~-VILDlH-~~pG~qng~~~s 146 (399)
T 3n9k_A 73 WITEQDFKQISNLGLNFVRIPIGYWAFQLL----DNDPYVQGQVQYLEKALGWARKNNIR-VWIDLH-GAPGSQNGFDNS 146 (399)
T ss_dssp HSCHHHHHHHHHTTCCEEEEEEEGGGTCCC----TTCCCCCCHHHHHHHHHHHHHHTTCE-EEEEEE-ECTTCSSCCGGG
T ss_pred cCcHHHHHHHHHcCCCEEEEcccHHHccCC----CCCccchhHHHHHHHHHHHHHHCCCE-EEEEec-CCCcccccccCC
Confidence 4689999999999999 555554444211 0111 1467899999999999997 889985 4553
Q ss_pred -----------CCHHHHHHHHHHHHh-C-CC---CcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 012112 227 -----------QTPQMWEESLRRTVG-A-QP---KHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSS 290 (471)
Q Consensus 227 -----------qT~e~~~~~l~~~~~-l-~p---~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~ 290 (471)
.+.+.+.+.++.+.+ + +. +.|..|.+.-||..+ ..+.+...+.|..+.+.+++
T Consensus 147 G~~~~~~w~~~~~~~~~~~~w~~iA~ry~~~~y~~~V~~~el~NEP~~~-----------~~~~~~~~~~~~~a~~~IR~ 215 (399)
T 3n9k_A 147 GLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIELLNEPLGP-----------VLNMDKLKQFFLDGYNSLRQ 215 (399)
T ss_dssp SSTTCCCTTSTTHHHHHHHHHHHHHHHHSSGGGTTTEEEEESCSCCCGG-----------GSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHhhcccCCCceEEEEeccCCCCC-----------CCCHHHHHHHHHHHHHHHHh
Confidence 134444555554443 2 22 568889998888643 02356677888999999998
Q ss_pred CCCcee
Q 012112 291 AGYRHY 296 (471)
Q Consensus 291 ~Gy~~y 296 (471)
.+-.+.
T Consensus 216 ~~p~~~ 221 (399)
T 3n9k_A 216 TGSVTP 221 (399)
T ss_dssp TTCCCC
T ss_pred cCCCCe
Confidence 876654
No 18
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=92.03 E-value=0.74 Score=44.46 Aligned_cols=98 Identities=12% Similarity=0.080 Sum_probs=71.8
Q ss_pred CCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHH-HHcCCCC--CHHHHHHHHHHHHHcCCCeeEeeee--c
Q 012112 148 LDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELL-KSCGRAH--GLKEVYEAIEIVKLCGVENWSLDLI--S 222 (471)
Q Consensus 148 ~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L-~~l~R~~--t~~~~~~ai~~~~~~G~~~v~~DlI--~ 222 (471)
++..+.+-+ | +.+.++...++|++.|.+-+ +.++... ..+++.. +.+.+.++++.+++.|+. |...+. +
T Consensus 71 ~~~~v~~l~-~---n~~~i~~a~~~G~~~V~i~~-~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~-V~~~l~~~~ 144 (295)
T 1ydn_A 71 DGVRYSVLV-P---NMKGYEAAAAAHADEIAVFI-SASEGFSKANINCTIAESIERLSPVIGAAINDGLA-IRGYVSCVV 144 (295)
T ss_dssp SSSEEEEEC-S---SHHHHHHHHHTTCSEEEEEE-ESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCE-EEEEEECSS
T ss_pred CCCEEEEEe-C---CHHHHHHHHHCCCCEEEEEE-ecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCe-EEEEEEEEe
Confidence 355666554 3 57889999999999988865 3455544 4455543 456677789999999997 775555 5
Q ss_pred CCCC---CCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 223 SLPH---QTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 223 GlPg---qT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
|-|. -+++.+.+.++.+.+.+++.|++..
T Consensus 145 ~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~D 176 (295)
T 1ydn_A 145 ECPYDGPVTPQAVASVTEQLFSLGCHEVSLGD 176 (295)
T ss_dssp EETTTEECCHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred cCCcCCCCCHHHHHHHHHHHHhcCCCEEEecC
Confidence 5554 3688888899999999999888874
No 19
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=91.94 E-value=0.34 Score=40.80 Aligned_cols=78 Identities=9% Similarity=0.040 Sum_probs=55.8
Q ss_pred CCHhhHHHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhccccc
Q 012112 365 IDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRL 444 (471)
Q Consensus 365 l~~~~~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 444 (471)
++..+ ..++..|....++...++.+..|.+.. .+...++.|++.|||....+. .+.|.
T Consensus 35 lt~~~---~~iL~~l~~~~~~t~~eLa~~l~~~~~-~vs~~l~~L~~~Glv~r~~~~------------------~D~R~ 92 (143)
T 3oop_A 35 VTPEQ---WSVLEGIEANEPISQKEIALWTKKDTP-TVNRIVDVLLRKELIVREIST------------------EDRRI 92 (143)
T ss_dssp SCHHH---HHHHHHHHHHSSEEHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEEC----------------------CCS
T ss_pred CCHHH---HHHHHHHHHcCCcCHHHHHHHHCCCHh-hHHHHHHHHHHCCCeeccCCC------------------ccCce
Confidence 55543 334445555578999999999999864 467899999999999865321 13455
Q ss_pred ceeeecCchhhchHHHHHHHH
Q 012112 445 AYFRLSDPEGFLLSNELISHA 465 (471)
Q Consensus 445 ~~~~lt~~~G~~~~n~i~~~~ 465 (471)
-++.|| ++|..+.+.+...+
T Consensus 93 ~~~~LT-~~G~~~~~~~~~~~ 112 (143)
T 3oop_A 93 SLLSLT-DKGRKETTELRDIV 112 (143)
T ss_dssp CEEEEC-HHHHHHHHHHHHHH
T ss_pred eeeeEC-HHHHHHHHHHHHHH
Confidence 579997 99999998875443
No 20
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=91.78 E-value=0.45 Score=40.14 Aligned_cols=78 Identities=15% Similarity=0.151 Sum_probs=56.4
Q ss_pred CCHhhHHHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhccccc
Q 012112 365 IDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRL 444 (471)
Q Consensus 365 l~~~~~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 444 (471)
++..+ ..++..|....|+...++++..|.+.. .+...++.|++.|||....+. .+.|.
T Consensus 29 lt~~q---~~iL~~l~~~~~~t~~eLa~~l~~~~~-tvs~~l~~Le~~Glv~r~~~~------------------~D~R~ 86 (145)
T 3g3z_A 29 LNYNL---FAVLYTLATEGSRTQKHIGEKWSLPKQ-TVSGVCKTLAGQGLIEWQEGE------------------QDRRK 86 (145)
T ss_dssp CCHHH---HHHHHHHHHHCSBCHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEECCCS------------------SCGGG
T ss_pred CCHHH---HHHHHHHHHCCCCCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEeeccCC------------------CCCce
Confidence 45543 345555556678999999999999864 467889999999999864321 12344
Q ss_pred ceeeecCchhhchHHHHHHHH
Q 012112 445 AYFRLSDPEGFLLSNELISHA 465 (471)
Q Consensus 445 ~~~~lt~~~G~~~~n~i~~~~ 465 (471)
-++.|| ++|..+.+.+...+
T Consensus 87 ~~~~LT-~~G~~~~~~~~~~~ 106 (145)
T 3g3z_A 87 RLLSLT-ETGKAYAAPLTESA 106 (145)
T ss_dssp SCEEEC-HHHHHHHHHHHHHH
T ss_pred eeeeEC-hhHHHHHHHHHHHH
Confidence 579997 99999987765443
No 21
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=91.56 E-value=0.4 Score=37.85 Aligned_cols=60 Identities=17% Similarity=0.114 Sum_probs=46.7
Q ss_pred CCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHHHHH
Q 012112 385 VDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNELISH 464 (471)
Q Consensus 385 i~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i~~~ 464 (471)
+...++.+++|.+-. .+...++.|++.|||.... + .|.-.++|| ++|..+.+.+...
T Consensus 31 ~t~~eLa~~l~i~~~-tvs~~l~~Le~~Glv~~~~-d--------------------~R~~~v~LT-~~G~~~~~~~~~~ 87 (95)
T 2qvo_A 31 VYIQYIASKVNSPHS-YVWLIIKKFEEAKMVECEL-E--------------------GRTKIIRLT-DKGQKIAQQIKSI 87 (95)
T ss_dssp EEHHHHHHHSSSCHH-HHHHHHHHHHHTTSEEEEE-E--------------------TTEEEEEEC-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHH-HHHHHHHHHHHCcCccCCC-C--------------------CCeEEEEEC-hhHHHHHHHHHHH
Confidence 889999999999864 5678899999999994322 2 233468997 9999999988776
Q ss_pred HHh
Q 012112 465 AFG 467 (471)
Q Consensus 465 ~~~ 467 (471)
.-.
T Consensus 88 ~~~ 90 (95)
T 2qvo_A 88 IDI 90 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 22
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=91.53 E-value=0.44 Score=41.20 Aligned_cols=78 Identities=10% Similarity=0.030 Sum_probs=57.0
Q ss_pred CCHhhHHHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhccccc
Q 012112 365 IDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRL 444 (471)
Q Consensus 365 l~~~~~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 444 (471)
++..+ ..++..|....|+...++++.+|.+-. .+...++.|++.|||....+. .+.|.
T Consensus 44 lt~~q---~~iL~~l~~~~~~t~~eLa~~l~~~~~-tvs~~l~~Le~~Glv~r~~~~------------------~DrR~ 101 (162)
T 3k0l_A 44 ISLPQ---FTALSVLAAKPNLSNAKLAERSFIKPQ-SANKILQDLLANGWIEKAPDP------------------THGRR 101 (162)
T ss_dssp CCHHH---HHHHHHHHHCTTCCHHHHHHHHTSCGG-GHHHHHHHHHHTTSEEEEECC------------------SSSCC
T ss_pred CCHHH---HHHHHHHHHCCCCCHHHHHHHHCCCHH-HHHHHHHHHHHCcCeEecCCC------------------CcCCe
Confidence 55443 345555666679999999999999864 467889999999999875321 13445
Q ss_pred ceeeecCchhhchHHHHHHHH
Q 012112 445 AYFRLSDPEGFLLSNELISHA 465 (471)
Q Consensus 445 ~~~~lt~~~G~~~~n~i~~~~ 465 (471)
-.++|| ++|..+...+...+
T Consensus 102 ~~l~LT-~~G~~~~~~~~~~~ 121 (162)
T 3k0l_A 102 ILVTVT-PSGLDKLNQCNQVV 121 (162)
T ss_dssp EEEEEC-HHHHHHHHHHHHHH
T ss_pred eEeEEC-HhHHHHHHHHHHHH
Confidence 579997 99999998875543
No 23
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=91.23 E-value=0.35 Score=41.85 Aligned_cols=72 Identities=11% Similarity=-0.002 Sum_probs=53.7
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
.++..|....|+...++.+..|.+-. .+...++.|++.|||....+. .+.|.-++.|| ++
T Consensus 57 ~vL~~l~~~~~~t~~eLa~~l~~~~~-~vs~~l~~Le~~Glv~r~~~~------------------~DrR~~~~~LT-~~ 116 (161)
T 3e6m_A 57 RLLSSLSAYGELTVGQLATLGVMEQS-TTSRTVDQLVDEGLAARSISD------------------ADQRKRTVVLT-RK 116 (161)
T ss_dssp HHHHHHHHHSEEEHHHHHHHTTCCHH-HHHHHHHHHHHTTSEEECC---------------------CCCSCEEEEC-HH
T ss_pred HHHHHHHhCCCCCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEEeeCCc------------------ccCCeeEeeEC-HH
Confidence 44455555678999999999999864 567899999999999875321 13455679997 99
Q ss_pred hhchHHHHHHHH
Q 012112 454 GFLLSNELISHA 465 (471)
Q Consensus 454 G~~~~n~i~~~~ 465 (471)
|..+.+.+...+
T Consensus 117 G~~~~~~~~~~~ 128 (161)
T 3e6m_A 117 GKKKLAEISPLI 128 (161)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998875543
No 24
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=91.13 E-value=0.46 Score=40.93 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=52.1
Q ss_pred HHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchh
Q 012112 375 LMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEG 454 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G 454 (471)
++..|....|+...++++..|.+.. .+...++.|++.|||....+. .+.|.-++.|| ++|
T Consensus 55 vL~~l~~~~~~t~~eLa~~l~~~~~-tvs~~l~~Le~~Glv~r~~~~------------------~DrR~~~l~LT-~~G 114 (159)
T 3s2w_A 55 FLMRLYREDGINQESLSDYLKIDKG-TTARAIQKLVDEGYVFRQRDE------------------KDRRSYRVFLT-EKG 114 (159)
T ss_dssp HHHHHHHSCSEEHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEEECC---------------------CCEEEEEC-HHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEEEecCC------------------CCCCeeEEEEC-HHH
Confidence 3444445678999999999999864 567899999999999865321 12355578997 999
Q ss_pred hchHHHHHHHH
Q 012112 455 FLLSNELISHA 465 (471)
Q Consensus 455 ~~~~n~i~~~~ 465 (471)
..+.+.+...+
T Consensus 115 ~~~~~~~~~~~ 125 (159)
T 3s2w_A 115 KKLEPDMKKIA 125 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998865443
No 25
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=91.05 E-value=0.5 Score=39.75 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=56.0
Q ss_pred CCHhhHHHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhccccc
Q 012112 365 IDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRL 444 (471)
Q Consensus 365 l~~~~~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 444 (471)
++..+ ..++..|....++...++++..|.+.. .+...++.|++.|||....+. .+.|.
T Consensus 34 lt~~q---~~vL~~l~~~~~~t~~eLa~~l~~~~~-tvs~~l~~L~~~Glv~r~~~~------------------~D~R~ 91 (140)
T 3hsr_A 34 LTYTG---YIVLMAIENDEKLNIKKLGERVFLDSG-TLTPLLKKLEKKDYVVRTREE------------------KDERN 91 (140)
T ss_dssp CCHHH---HHHHHHSCTTCEEEHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEEC-------------------------
T ss_pred CCHHH---HHHHHHHHHcCCcCHHHHHHHHCCChh-hHHHHHHHHHHCCCeEecCCC------------------CCcce
Confidence 55533 455666766778999999999999864 567899999999999875321 12445
Q ss_pred ceeeecCchhhchHHHHHHHH
Q 012112 445 AYFRLSDPEGFLLSNELISHA 465 (471)
Q Consensus 445 ~~~~lt~~~G~~~~n~i~~~~ 465 (471)
-.+.|| ++|..+.+.+....
T Consensus 92 ~~~~LT-~~G~~~~~~~~~~~ 111 (140)
T 3hsr_A 92 LQISLT-EQGKAIKSPLAEIS 111 (140)
T ss_dssp CEEEEC-HHHHHTHHHHHHHH
T ss_pred eeeeEC-hHHHHHHHHHHHHH
Confidence 578997 99999998876544
No 26
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=90.91 E-value=0.54 Score=39.27 Aligned_cols=72 Identities=10% Similarity=0.053 Sum_probs=52.2
Q ss_pred HHHHhccccC--CCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecC
Q 012112 374 VLMLSFRTAR--GVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSD 451 (471)
Q Consensus 374 ~~~~~Lr~~~--gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~ 451 (471)
.++..|.... |+...++++..|.+.. .+...++.|++.|||....+. .+.|.-++.||
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l~~~~~-tvs~~l~~Le~~Gli~r~~~~------------------~D~R~~~~~LT- 94 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKALQRTGP-TVSNLLRNLERKKLIYRYVDA------------------QDTRRKNIGLT- 94 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEEECC------------------C--CCEEEEEC-
T ss_pred HHHHHHHhcCCCCcCHHHHHHHhCCCcc-cHHHHHHHHHHCCCEeecCCC------------------CCCCeeeeEEC-
Confidence 3444455443 8999999999999864 467899999999999865321 13455578997
Q ss_pred chhhchHHHHHHHH
Q 012112 452 PEGFLLSNELISHA 465 (471)
Q Consensus 452 ~~G~~~~n~i~~~~ 465 (471)
++|..+.+.+...+
T Consensus 95 ~~G~~~~~~~~~~~ 108 (139)
T 3eco_A 95 TSGIKLVEAFTSIF 108 (139)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988765443
No 27
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=90.84 E-value=1 Score=43.71 Aligned_cols=99 Identities=15% Similarity=0.081 Sum_probs=74.1
Q ss_pred CCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeeEeeee--cC
Q 012112 148 LDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAH--GLKEVYEAIEIVKLCGVENWSLDLI--SS 223 (471)
Q Consensus 148 ~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~--t~~~~~~ai~~~~~~G~~~v~~DlI--~G 223 (471)
.+..+.+-+ | +.+.++...++|++.|.+-.-+-+-...+.+++.. ..+.+.++++.+++.|.. |...+. +|
T Consensus 75 ~~~~~~~l~-~---~~~~i~~a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~-V~~~l~~~~~ 149 (302)
T 2ftp_A 75 PGVTYAALA-P---NLKGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVR-VRGYISCVLG 149 (302)
T ss_dssp TTSEEEEEC-C---SHHHHHHHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCE-EEEEEECTTC
T ss_pred CCCEEEEEe-C---CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEEEEEEee
Confidence 445666544 3 68889999999999998876554555667777754 567788889999999997 766554 55
Q ss_pred CCC---CCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 224 LPH---QTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 224 lPg---qT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
-|. -+++.+.+.++.+.+.+++.|++-.
T Consensus 150 ~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~D 180 (302)
T 2ftp_A 150 CPYDGDVDPRQVAWVARELQQMGCYEVSLGD 180 (302)
T ss_dssp BTTTBCCCHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CCcCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 554 3678888888888999999887763
No 28
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=90.70 E-value=0.53 Score=41.10 Aligned_cols=78 Identities=10% Similarity=0.079 Sum_probs=53.2
Q ss_pred CCHhhHHHHHHHHhccc-cCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccc
Q 012112 365 IDAKDLAMDVLMLSFRT-ARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNR 443 (471)
Q Consensus 365 l~~~~~~~e~~~~~Lr~-~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 443 (471)
++..+ ..++..|.. ..|+...++++..|.+-. .+...++.|++.|||....+. .+.|
T Consensus 51 lt~~q---~~vL~~L~~~~~~~t~~eLa~~l~i~~~-tvs~~l~~Le~~GlV~r~~~~------------------~DrR 108 (166)
T 3deu_A 51 LTQTH---WVTLHNIHQLPPDQSQIQLAKAIGIEQP-SLVRTLDQLEDKGLISRQTCA------------------SDRR 108 (166)
T ss_dssp CCHHH---HHHHHHHHHSCSSEEHHHHHHHHTSCHH-HHHHHHHHHHHTTSEEEC-------------------------
T ss_pred CCHHH---HHHHHHHHHcCCCCCHHHHHHHHCCCHh-hHHHHHHHHHHCCCEEeeCCC------------------CCCC
Confidence 55543 334444554 567999999999999854 467889999999999875321 1345
Q ss_pred cceeeecCchhhchHHHHHHHH
Q 012112 444 LAYFRLSDPEGFLLSNELISHA 465 (471)
Q Consensus 444 ~~~~~lt~~~G~~~~n~i~~~~ 465 (471)
.-++.|| ++|..+.+.+...+
T Consensus 109 ~~~l~LT-~~G~~~~~~~~~~~ 129 (166)
T 3deu_A 109 AKRIKLT-EKAEPLIAEMEEVI 129 (166)
T ss_dssp -CEEEEC-GGGHHHHHHHHHHH
T ss_pred eeEEEEC-HHHHHHHHHHHHHH
Confidence 5579997 99999988765443
No 29
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=90.54 E-value=0.35 Score=40.72 Aligned_cols=78 Identities=13% Similarity=0.104 Sum_probs=50.3
Q ss_pred CCHhhHHHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhccccc
Q 012112 365 IDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRL 444 (471)
Q Consensus 365 l~~~~~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 444 (471)
++..+ -.++..|....|+...++++..|.+.. .+...++.|++.|||....+. .+.|.
T Consensus 35 lt~~~---~~vL~~l~~~~~~t~~eLa~~l~~~~~-tvs~~l~~L~~~Glv~r~~~~------------------~DrR~ 92 (142)
T 3ech_A 35 LTPPD---VHVLKLIDEQRGLNLQDLGRQMCRDKA-LITRKIRELEGRNLVRRERNP------------------SDQRS 92 (142)
T ss_dssp CCHHH---HHHHHHHHHTTTCCHHHHHHHHC---C-HHHHHHHHHHHTTSEEC---------------------------
T ss_pred CCHHH---HHHHHHHHhCCCcCHHHHHHHhCCCHH-HHHHHHHHHHHCCCEeeccCC------------------CCCCe
Confidence 55543 345555566679999999999998754 466789999999999864321 12344
Q ss_pred ceeeecCchhhchHHHHHHHH
Q 012112 445 AYFRLSDPEGFLLSNELISHA 465 (471)
Q Consensus 445 ~~~~lt~~~G~~~~n~i~~~~ 465 (471)
-++.|| ++|..+.+.+...+
T Consensus 93 ~~~~LT-~~G~~~~~~~~~~~ 112 (142)
T 3ech_A 93 FQLFLT-DEGLAIHLHAELIM 112 (142)
T ss_dssp -CCEEC-HHHHHHHHHHHHHH
T ss_pred eeeEEC-HHHHHHHHHHHHHH
Confidence 578997 99999998765443
No 30
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=90.32 E-value=0.48 Score=40.36 Aligned_cols=73 Identities=21% Similarity=0.186 Sum_probs=52.0
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
.++..|....|+...++++..|.+.. .+...++.|++.|||....+. .+.|.-++.|| ++
T Consensus 45 ~iL~~l~~~~~~~~~eLa~~l~~~~~-~vs~~l~~L~~~Glv~r~~~~------------------~D~R~~~~~LT-~~ 104 (149)
T 4hbl_A 45 LVMLTLWEENPQTLNSIGRHLDLSSN-TLTPMLKRLEQSGWVKRERQQ------------------SDKRQLIITLT-DN 104 (149)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHTCCHH-HHHHHHHHHHHHTSEEC---------------------------CEEEEC-SH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEeeCCCC------------------CCcceeeeeEC-HH
Confidence 44555555688999999999999864 567899999999999864311 13455579997 99
Q ss_pred hhchHHHHHHHHH
Q 012112 454 GFLLSNELISHAF 466 (471)
Q Consensus 454 G~~~~n~i~~~~~ 466 (471)
|..+.+.+...+-
T Consensus 105 G~~~~~~~~~~~~ 117 (149)
T 4hbl_A 105 GQQQQEAVFEAIS 117 (149)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999988766554
No 31
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=90.24 E-value=0.98 Score=37.60 Aligned_cols=70 Identities=10% Similarity=0.017 Sum_probs=51.6
Q ss_pred HHHhccccC--CCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCc
Q 012112 375 LMLSFRTAR--GVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDP 452 (471)
Q Consensus 375 ~~~~Lr~~~--gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~ 452 (471)
++.-|.... ++...++.+.+|.+.. .+...++.|++.|||....+. .+.|.-++.|| +
T Consensus 39 iL~~l~~~~~~~~~~~ela~~l~~~~~-tvs~~l~~Le~~Gli~r~~~~------------------~d~R~~~i~lT-~ 98 (141)
T 3bro_A 39 IIDYLSRNKNKEVLQRDLESEFSIKSS-TATVLLQRMEIKKLLYRKVSG------------------KDSRQKCLKLT-K 98 (141)
T ss_dssp HHHHHHHTTTSCCBHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEEECS------------------SCTTSEEEEEC-H
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCCCcc-hHHHHHHHHHHCCCEEeeCCC------------------cCCCeeeeEEC-H
Confidence 444455455 7999999999999854 567899999999999865321 12344578997 9
Q ss_pred hhhchHHHHHHH
Q 012112 453 EGFLLSNELISH 464 (471)
Q Consensus 453 ~G~~~~n~i~~~ 464 (471)
+|..+.+.+...
T Consensus 99 ~G~~~~~~~~~~ 110 (141)
T 3bro_A 99 KANKLETIILSY 110 (141)
T ss_dssp HHHTTHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998876443
No 32
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=90.20 E-value=0.86 Score=37.87 Aligned_cols=78 Identities=17% Similarity=0.178 Sum_probs=55.7
Q ss_pred CCHhhHHHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhccccc
Q 012112 365 IDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRL 444 (471)
Q Consensus 365 l~~~~~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 444 (471)
++..+. .++..|....++...++.+..|.+.. .+...++.|++.||+....+. .+.|.
T Consensus 32 lt~~~~---~iL~~l~~~~~~~~~~la~~l~~~~~-tvs~~l~~L~~~gli~r~~~~------------------~d~R~ 89 (138)
T 1jgs_A 32 ITAAQF---KVLCSIRCAACITPVELKKVLSVDLG-ALTRMLDRLVCKGWVERLPNP------------------NDKRG 89 (138)
T ss_dssp SCHHHH---HHHHHHHHHSSBCHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEEECT------------------TCSSC
T ss_pred CCHHHH---HHHHHHHhcCCCCHHHHHHHHCCChH-HHHHHHHHHHHCCCEEecCCc------------------ccCce
Confidence 555432 34445555678999999999999865 467789999999999875311 12444
Q ss_pred ceeeecCchhhchHHHHHHHH
Q 012112 445 AYFRLSDPEGFLLSNELISHA 465 (471)
Q Consensus 445 ~~~~lt~~~G~~~~n~i~~~~ 465 (471)
-++.|| ++|..+.+.+...+
T Consensus 90 ~~~~lT-~~G~~~~~~~~~~~ 109 (138)
T 1jgs_A 90 VLVKLT-TGGAAICEQCHQLV 109 (138)
T ss_dssp EEEEEC-HHHHHHHHHHHHHH
T ss_pred eEeEEC-hhHHHHHHHHHHHH
Confidence 578997 99999988765544
No 33
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=90.19 E-value=0.32 Score=40.57 Aligned_cols=80 Identities=11% Similarity=0.031 Sum_probs=56.8
Q ss_pred CCHhhHHHHHHHHhcccc--CCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhccc
Q 012112 365 IDAKDLAMDVLMLSFRTA--RGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGN 442 (471)
Q Consensus 365 l~~~~~~~e~~~~~Lr~~--~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~ 442 (471)
++..+. .++..|... .++...++++.+|.+. ..+...++.|++.|||....+. .+.
T Consensus 35 lt~~q~---~vL~~l~~~~~~~~t~~eLa~~l~~~~-~tvs~~l~~Le~~Glv~r~~~~------------------~D~ 92 (127)
T 2frh_A 35 ISFEEF---AVLTYISENKEKEYYLKDIINHLNYKQ-PQVVKAVKILSQEDYFDKKRNE------------------HDE 92 (127)
T ss_dssp CCHHHH---HHHHHHHHTCCSEEEHHHHHHHSSSHH-HHHHHHHHHHHHTTSSCCBCCS------------------SSS
T ss_pred CCHHHH---HHHHHHHhccCCCcCHHHHHHHHCCCH-HHHHHHHHHHHHCCCEEecCCC------------------CCC
Confidence 555432 334444445 6799999999999875 3567889999999999763211 134
Q ss_pred ccceeeecCchhhchHHHHHHHHHh
Q 012112 443 RLAYFRLSDPEGFLLSNELISHAFG 467 (471)
Q Consensus 443 ~~~~~~lt~~~G~~~~n~i~~~~~~ 467 (471)
|.-.+.|| ++|..+.+.+...+-.
T Consensus 93 R~~~i~LT-~~G~~~~~~~~~~~~~ 116 (127)
T 2frh_A 93 RTVLILVN-AQQRKKIESLLSRVNK 116 (127)
T ss_dssp CCCEEECC-SHHHHHHHHHHHHHHH
T ss_pred CeeEEEEC-HHHHHHHHHHHHHHHH
Confidence 55579997 9999999887666544
No 34
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=89.80 E-value=1.3 Score=36.94 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=51.5
Q ss_pred HHHhc-cccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 375 LMLSF-RTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 375 ~~~~L-r~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
++..| ....++...++.+.+|.+.. .+...++.|++.|||....+. .+.|.-++.|| ++
T Consensus 42 iL~~l~~~~~~~t~~~la~~l~~s~~-~vs~~l~~L~~~glv~r~~~~------------------~d~R~~~~~lT-~~ 101 (146)
T 2fbh_A 42 VLLHLARHRDSPTQRELAQSVGVEGP-TLARLLDGLESQGLVRRLAVA------------------EDRRAKHIVLT-PK 101 (146)
T ss_dssp HHHHHHHCSSCCBHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEECCB------------------TTBCSCEEEEC-TT
T ss_pred HHHHHHHcCCCCCHHHHHHHhCCChh-hHHHHHHHHHHCCCeeecCCC------------------cccCeeeeEEC-Hh
Confidence 44445 45678999999999999864 467789999999999875321 12445578997 99
Q ss_pred hhchHHHHHH
Q 012112 454 GFLLSNELIS 463 (471)
Q Consensus 454 G~~~~n~i~~ 463 (471)
|..+.+.+..
T Consensus 102 G~~~~~~~~~ 111 (146)
T 2fbh_A 102 ADVLIADIEA 111 (146)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999877643
No 35
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=89.77 E-value=0.58 Score=39.56 Aligned_cols=78 Identities=12% Similarity=0.084 Sum_probs=53.6
Q ss_pred cCCHhhHHHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccc
Q 012112 364 HIDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNR 443 (471)
Q Consensus 364 ~l~~~~~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 443 (471)
.++..+ ..++..|....++...++++..|.+.. .+...++.|++.|||....+. .+.|
T Consensus 37 ~l~~~~---~~iL~~l~~~~~~t~~ela~~l~~~~~-tvs~~l~~Le~~Glv~r~~~~------------------~D~R 94 (148)
T 3nrv_A 37 GIGMTE---WRIISVLSSASDCSVQKISDILGLDKA-AVSRTVKKLEEKKYIEVNGHS------------------EDKR 94 (148)
T ss_dssp TCCHHH---HHHHHHHHHSSSBCHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEC--------------------------
T ss_pred CCCHHH---HHHHHHHHcCCCCCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEEeecCC------------------CCcc
Confidence 355543 345555666678999999999999864 467899999999999864211 1234
Q ss_pred cceeeecCchhhchHHHHHHH
Q 012112 444 LAYFRLSDPEGFLLSNELISH 464 (471)
Q Consensus 444 ~~~~~lt~~~G~~~~n~i~~~ 464 (471)
.-++.|| ++|..+.+.+...
T Consensus 95 ~~~~~lT-~~G~~~~~~~~~~ 114 (148)
T 3nrv_A 95 TYAINLT-EMGQELYEVASDF 114 (148)
T ss_dssp -CCBEEC-HHHHHHHHHHHHH
T ss_pred eeEeEEC-HhHHHHHHHHHHH
Confidence 4478997 9999998876544
No 36
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=89.76 E-value=0.99 Score=37.95 Aligned_cols=71 Identities=13% Similarity=0.041 Sum_probs=51.2
Q ss_pred HHHHhccc-cCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCc
Q 012112 374 VLMLSFRT-ARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDP 452 (471)
Q Consensus 374 ~~~~~Lr~-~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~ 452 (471)
.++..|.. ..++...++.+..|.+-. .+...++.|++.|||....+. .+.|.-++.|| +
T Consensus 39 ~iL~~l~~~~~~~~~~~la~~l~i~~~-~vs~~l~~Le~~glv~r~~~~------------------~d~R~~~~~lT-~ 98 (147)
T 2hr3_A 39 VVLGAIDRLGGDVTPSELAAAERMRSS-NLAALLRELERGGLIVRHADP------------------QDGRRTRVSLS-S 98 (147)
T ss_dssp HHHHHHHHTTSCBCHHHHHHHTTCCHH-HHHHHHHHHHHTTSEEEEC------------------------CCEEEEC-H
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCChh-hHHHHHHHHHHCCCEeeCCCC------------------CCCCceeeEEC-H
Confidence 44555555 678999999999999864 467789999999999875321 12344578997 9
Q ss_pred hhhchHHHHHHH
Q 012112 453 EGFLLSNELISH 464 (471)
Q Consensus 453 ~G~~~~n~i~~~ 464 (471)
+|..+.+.+...
T Consensus 99 ~G~~~~~~~~~~ 110 (147)
T 2hr3_A 99 EGRRNLYGNRAK 110 (147)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998876543
No 37
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=89.73 E-value=1.3 Score=38.02 Aligned_cols=78 Identities=10% Similarity=0.121 Sum_probs=54.5
Q ss_pred CCHhhHHHHHHHHhc-cccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccc
Q 012112 365 IDAKDLAMDVLMLSF-RTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNR 443 (471)
Q Consensus 365 l~~~~~~~e~~~~~L-r~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 443 (471)
++..+. .++..| +...++...++++..|.+-. .+...++.|++.|||....+. .+.|
T Consensus 29 Lt~~q~---~vL~~L~~~~~~~~~~eLa~~l~~~~~-tvs~~v~~Le~~GlV~R~~~~------------------~DrR 86 (151)
T 4aik_A 29 LTQTHW---VTLYNINRLPPEQSQIQLAKAIGIEQP-SLVRTLDQLEEKGLITRHTSA------------------NDRR 86 (151)
T ss_dssp CCHHHH---HHHHHHHHSCTTSCHHHHHHHHTSCHH-HHHHHHHHHHHTTSEEEEECS------------------SCTT
T ss_pred CCHHHH---HHHHHHHHcCCCCcHHHHHHHHCcCHH-HHHHHHHHHHhCCCeEeecCC------------------CCCc
Confidence 555432 334444 33456777899999999864 567889999999999865321 1345
Q ss_pred cceeeecCchhhchHHHHHHHH
Q 012112 444 LAYFRLSDPEGFLLSNELISHA 465 (471)
Q Consensus 444 ~~~~~lt~~~G~~~~n~i~~~~ 465 (471)
.-.|.|| ++|..+.+.+...+
T Consensus 87 ~~~l~LT-~~G~~~~~~~~~~~ 107 (151)
T 4aik_A 87 AKRIKLT-EQSSPIIEQVDGVI 107 (151)
T ss_dssp CEEEEEC-GGGHHHHHHHHHHH
T ss_pred chhhhcC-HHHHHHHHHHHHHH
Confidence 5579997 99999988765443
No 38
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=89.66 E-value=1.2 Score=37.35 Aligned_cols=70 Identities=10% Similarity=0.119 Sum_probs=52.0
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
.++.-|. ..++...++.+..|.+.. .+...++.|++.|||....+. .+.|.-++.|| ++
T Consensus 41 ~iL~~l~-~~~~~~~ela~~l~~s~~-tvs~~l~~Le~~glv~r~~~~------------------~d~r~~~~~lT-~~ 99 (146)
T 2gxg_A 41 LVLRATS-DGPKTMAYLANRYFVTQS-AITASVDKLEEMGLVVRVRDR------------------EDRRKILIEIT-EK 99 (146)
T ss_dssp HHHHHHT-TSCBCHHHHHHHTTCCHH-HHHHHHHHHHHTTSEEEEECS------------------SCTTCEEEEEC-HH
T ss_pred HHHHHHh-cCCcCHHHHHHHhCCCch-hHHHHHHHHHHCCCEEeecCC------------------CCCceEEEEEC-HH
Confidence 3444555 778999999999999854 567889999999999865321 12344478997 99
Q ss_pred hhchHHHHHHH
Q 012112 454 GFLLSNELISH 464 (471)
Q Consensus 454 G~~~~n~i~~~ 464 (471)
|..+.+.+...
T Consensus 100 G~~~~~~~~~~ 110 (146)
T 2gxg_A 100 GLETFNKGIEI 110 (146)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998876543
No 39
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=89.62 E-value=0.72 Score=32.93 Aligned_cols=46 Identities=15% Similarity=0.334 Sum_probs=35.9
Q ss_pred hhHHHHHHHHhccccCC-CCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEe
Q 012112 368 KDLAMDVLMLSFRTARG-VDLKSFGETFGCSLVHTLCKAYKPYIESGHVICL 418 (471)
Q Consensus 368 ~~~~~e~~~~~Lr~~~g-i~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~ 418 (471)
++.+.+++ |.+.| +|++.|.++||++-.+ ....|.+|.+.|++..+
T Consensus 12 e~~lL~yI----r~sGGildI~~~a~kygV~kde-V~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 12 ERELLDYI----VNNGGFLDIEHFSKVYGVEKQE-VVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHH----HHTTSEEEHHHHHHHHCCCHHH-HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHH----HHcCCEEeHHHHHHHhCCCHHH-HHHHHHHHHHCCCeecc
Confidence 34445554 66777 8999999999999654 56789999999999753
No 40
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=89.53 E-value=0.84 Score=36.00 Aligned_cols=68 Identities=21% Similarity=0.206 Sum_probs=49.6
Q ss_pred HHHhccccCCCCHhhH----HHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeec
Q 012112 375 LMLSFRTARGVDLKSF----GETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLS 450 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~----~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt 450 (471)
++..|....++...++ ++.+|.+-. .+...++.|++.||+....+. |.-++.||
T Consensus 13 iL~~l~~~~~~~~~el~~~la~~l~is~~-tvs~~l~~Le~~gli~r~~~~---------------------r~~~~~LT 70 (99)
T 1tbx_A 13 VLAYLYDNEGIATYDLYKKVNAEFPMSTA-TFYDAKKFLIQEGFVKERQER---------------------GEKRLYLT 70 (99)
T ss_dssp HHHHHTTCTTCBHHHHHHHHHTTSCCCHH-HHHHHHHHHHHTTSEEEEEET---------------------TEEEEEEC
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHcCCCHH-HHHHHHHHHHHCCCEEEEecC---------------------CceEEEEC
Confidence 4444555567888888 777888754 467789999999999864321 33368997
Q ss_pred CchhhchHHHHHHHH
Q 012112 451 DPEGFLLSNELISHA 465 (471)
Q Consensus 451 ~~~G~~~~n~i~~~~ 465 (471)
++|..+...+...+
T Consensus 71 -~~G~~~~~~~~~~~ 84 (99)
T 1tbx_A 71 -EKGKLFAISLKTAI 84 (99)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHH
Confidence 99999988765443
No 41
>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=89.52 E-value=1.5 Score=41.73 Aligned_cols=113 Identities=15% Similarity=0.092 Sum_probs=78.1
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe------cCCCCCHHHHHHHHHCCCCEEEEccCCCCHHH
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM------DPGTFDARKMEELMDLGVNRVSLGVQAFQDEL 188 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~------~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~ 188 (471)
|+.+-||+||.++.+. +++.++..+++ + +.+..-. --...=++.++..++.|++.|.|.-=|.+
T Consensus 66 ID~lKfg~GTs~l~~~--l~ekI~l~~~~-g----V~v~~GGTlfE~~l~qg~~~~yl~~~k~lGF~~IEISdGti~--- 135 (276)
T 1u83_A 66 IDFVKFGWGTSLLTKD--LEEKISTLKEH-D----ITFFFGGTLFEKYVSQKKVNEFHRYCTYFGCEYIEISNGTLP--- 135 (276)
T ss_dssp CCEEEECTTGGGGCTT--HHHHHHHHHHT-T----CEEEECHHHHHHHHHTTCHHHHHHHHHHTTCSEEEECCSSSC---
T ss_pred cceEEecCcchhhhHH--HHHHHHHHHHc-C----CeEeCCcHHHHHHHHcCcHHHHHHHHHHcCCCEEEECCCccc---
Confidence 7889999999988776 89988888764 2 2222211 00013479999999999999877655542
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCC--C----CCCHHHHHHHHHHHHhCCCCcEE
Q 012112 189 LKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSL--P----HQTPQMWEESLRRTVGAQPKHVS 248 (471)
Q Consensus 189 L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl--P----gqT~e~~~~~l~~~~~l~p~his 248 (471)
.+.++..+.|+.+++. |. |-..+ |- | -.+++.|.+.++..++.+.+.|-
T Consensus 136 -------l~~~~~~~lI~~a~~~-f~-Vl~Ev--G~K~~~~~~~~~~~~~I~~~~~dLeAGA~~Vi 190 (276)
T 1u83_A 136 -------MTNKEKAAYIADFSDE-FL-VLSEV--GSKDAELASRQSSEEWLEYIVEDMEAGAEKVI 190 (276)
T ss_dssp -------CCHHHHHHHHHHHTTT-SE-EEEEC--SCCC------CCSTHHHHHHHHHHHHTEEEEE
T ss_pred -------CCHHHHHHHHHHHHhh-cE-Eeeec--cccCccccCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 4566777788888777 65 33332 33 2 24678999999999999987663
No 42
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=89.22 E-value=0.93 Score=37.96 Aligned_cols=70 Identities=11% Similarity=0.148 Sum_probs=51.8
Q ss_pred HHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchh
Q 012112 375 LMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEG 454 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G 454 (471)
++..|....|+...++.+.+|.+.. .+...++.|++.|||....+. .+.|.-++.|| ++|
T Consensus 34 iL~~l~~~~~~t~~~la~~l~~s~~-~vs~~l~~Le~~gli~r~~~~------------------~d~R~~~~~lT-~~G 93 (144)
T 1lj9_A 34 YLVRVCENPGIIQEKIAELIKVDRT-TAARAIKRLEEQGFIYRQEDA------------------SNKKIKRIYAT-EKG 93 (144)
T ss_dssp HHHHHHHSTTEEHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEEECS------------------SCTTCEEEEEC-HHH
T ss_pred HHHHHHHCcCcCHHHHHHHHCCCHh-HHHHHHHHHHHCCCEEeecCC------------------CCCceeeeEEC-hhH
Confidence 4444555678999999999999854 567899999999999875321 12344578997 999
Q ss_pred hchHHHHHHH
Q 012112 455 FLLSNELISH 464 (471)
Q Consensus 455 ~~~~n~i~~~ 464 (471)
..+.+.+...
T Consensus 94 ~~~~~~~~~~ 103 (144)
T 1lj9_A 94 KNVYPIIVRE 103 (144)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998776443
No 43
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=89.16 E-value=1 Score=38.06 Aligned_cols=71 Identities=14% Similarity=0.122 Sum_probs=50.9
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
.++.-|....++...++.+.+|.+-. .+...++.|++.|||....+. .+.|.-+++|| ++
T Consensus 46 ~iL~~l~~~~~~t~~ela~~l~~~~~-tvs~~l~~Le~~Glv~r~~~~------------------~d~R~~~~~lT-~~ 105 (150)
T 2rdp_A 46 VALQWLLEEGDLTVGELSNKMYLACS-TTTDLVDRMERNGLVARVRDE------------------HDRRVVRIRLL-EK 105 (150)
T ss_dssp HHHHHHHHHCSBCHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEEECC------------------C---CEEEEEC-HH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCch-hHHHHHHHHHHCCCeeecCCC------------------CCcceeEeEEC-Hh
Confidence 34444555678999999999999854 467789999999999865311 12344478997 99
Q ss_pred hhchHHHHHHH
Q 012112 454 GFLLSNELISH 464 (471)
Q Consensus 454 G~~~~n~i~~~ 464 (471)
|..+.+.+...
T Consensus 106 G~~~~~~~~~~ 116 (150)
T 2rdp_A 106 GERIIEEVIEK 116 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998876544
No 44
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=89.13 E-value=1.1 Score=38.12 Aligned_cols=71 Identities=11% Similarity=0.133 Sum_probs=51.1
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
.++.-|....++...++.+..|.+-. .+...++.|++.|||....+. .+.|.-++.|| ++
T Consensus 47 ~iL~~l~~~~~~t~~ela~~l~i~~~-tvs~~l~~Le~~Glv~r~~~~------------------~d~R~~~~~lT-~~ 106 (155)
T 3cdh_A 47 RVLACLVDNDAMMITRLAKLSLMEQS-RMTRIVDQMDARGLVTRVADA------------------KDKRRVRVRLT-DD 106 (155)
T ss_dssp HHHHHHSSCSCBCHHHHHHHTTCCHH-HHHHHHHHHHHTTSEEECC------------------------CCCEEEC-HH
T ss_pred HHHHHHHHCCCcCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEEeccCC------------------CcCCeeEeEEC-HH
Confidence 45555666678999999999999854 467789999999999864311 12344468997 99
Q ss_pred hhchHHHHHHH
Q 012112 454 GFLLSNELISH 464 (471)
Q Consensus 454 G~~~~n~i~~~ 464 (471)
|..+.+.+...
T Consensus 107 G~~~~~~~~~~ 117 (155)
T 3cdh_A 107 GRALAESLVAS 117 (155)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998776443
No 45
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=89.13 E-value=3.1 Score=39.66 Aligned_cols=119 Identities=11% Similarity=0.116 Sum_probs=79.8
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHC--CCCEE-EEccCCCC--HHHH
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDL--GVNRV-SLGVQAFQ--DELL 189 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~--Gvnrv-siGvQS~~--d~~L 189 (471)
.+-|-+||+.+.--..+.+..+++.+++.++ ..++|. +.+.+.++.-.++ |.+-| |+.... + ++++
T Consensus 48 AdiIDIg~~s~~~eE~~rv~~vi~~l~~~~~----~pisID----T~~~~v~~aal~a~~Ga~iINdvs~~~-d~~~~~~ 118 (271)
T 2yci_X 48 AHYLDVNTGPTADDPVRVMEWLVKTIQEVVD----LPCCLD----STNPDAIEAGLKVHRGHAMINSTSADQ-WKMDIFF 118 (271)
T ss_dssp CSEEEEECCSCSSCHHHHHHHHHHHHHHHCC----CCEEEE----CSCHHHHHHHHHHCCSCCEEEEECSCH-HHHHHHH
T ss_pred CCEEEEcCCcCchhHHHHHHHHHHHHHHhCC----CeEEEe----CCCHHHHHHHHHhCCCCCEEEECCCCc-cccHHHH
Confidence 6778899988644345677788888887643 346665 5578888877777 86655 244433 4 5555
Q ss_pred HHc----------C---C--CCC----HHHHHHHHHHHHHcCCC--eeEeeeecCCCCCCHHHHHHHHHHHHhC
Q 012112 190 KSC----------G---R--AHG----LKEVYEAIEIVKLCGVE--NWSLDLISSLPHQTPQMWEESLRRTVGA 242 (471)
Q Consensus 190 ~~l----------~---R--~~t----~~~~~~ai~~~~~~G~~--~v~~DlI~GlPgqT~e~~~~~l~~~~~l 242 (471)
..+ . + ..+ .+...+.++.+.++|++ +|-+|-.+|+.|.|.+.-.++|+.+..+
T Consensus 119 ~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~~Gi~~~~IilDPg~gfigk~~~~~~~~l~~l~~~ 192 (271)
T 2yci_X 119 PMAKKYEAAIIGLTMNEKGVPKDANDRSQLAMELVANADAHGIPMTELYIDPLILPVNVAQEHAVEVLETIRQI 192 (271)
T ss_dssp HHHHHHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCCCTTTSTHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEecCCCccccCHHHHHHHHHHHHHH
Confidence 431 1 2 234 44566777888999997 4999999998888887665566655544
No 46
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=88.90 E-value=1 Score=43.97 Aligned_cols=98 Identities=11% Similarity=0.069 Sum_probs=72.1
Q ss_pred CCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHH-HHHHcCCCC--CHHHHHHHHHHHHHcCCCeeEeeeec--
Q 012112 148 LDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDE-LLKSCGRAH--GLKEVYEAIEIVKLCGVENWSLDLIS-- 222 (471)
Q Consensus 148 ~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~-~L~~l~R~~--t~~~~~~ai~~~~~~G~~~v~~DlI~-- 222 (471)
++..+..-+ | +.+-++...++|++.|.+-+ +.+|. ..+.+++.. ..+.+.++++.+++.|.. |...+++
T Consensus 73 ~~~~~~~l~-~---~~~~i~~a~~~g~~~v~i~~-~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~-v~~~i~~~~ 146 (307)
T 1ydo_A 73 KGVTYAALV-P---NQRGLENALEGGINEACVFM-SASETHNRKNINKSTSESLHILKQVNNDAQKANLT-TRAYLSTVF 146 (307)
T ss_dssp TTCEEEEEC-C---SHHHHHHHHHHTCSEEEEEE-ESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCE-EEEEEECTT
T ss_pred CCCeEEEEe-C---CHHhHHHHHhCCcCEEEEEe-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCE-EEEEEEEEe
Confidence 455666544 4 46778888899999999987 44554 555676643 356678889999999997 7766655
Q ss_pred CCCC---CCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 223 SLPH---QTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 223 GlPg---qT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
|.|. -+++.+.+.++.+.+++++.|++-.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~D 178 (307)
T 1ydo_A 147 GCPYEKDVPIEQVIRLSEALFEFGISELSLGD 178 (307)
T ss_dssp CBTTTBCCCHHHHHHHHHHHHHHTCSCEEEEC
T ss_pred cCCcCCCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4454 3678888999999999999887663
No 47
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=88.89 E-value=2 Score=42.40 Aligned_cols=130 Identities=16% Similarity=0.123 Sum_probs=82.8
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGR 194 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R 194 (471)
++.|=+|.+.-+--+.+.+.++.+... ....-++..+..-++- ..-++...++|++.|.+-+-+-+-...+.+++
T Consensus 56 v~~IE~g~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~i~~l~~~----~~~i~~a~~~g~~~v~i~~~~s~~~~~~~~~~ 130 (337)
T 3ble_A 56 VDRVEIASARVSKGELETVQKIMEWAA-TEQLTERIEILGFVDG----NKTVDWIKDSGAKVLNLLTKGSLHHLEKQLGK 130 (337)
T ss_dssp CSEEEEEETTSCTTHHHHHHHHHHHHH-HTTCGGGEEEEEESST----THHHHHHHHHTCCEEEEEEECSHHHHHHHTCC
T ss_pred CCEEEEeCCCCChhHHHHHHHHHhhhh-hhccCCCCeEEEEccc----hhhHHHHHHCCCCEEEEEEecCHHHHHHHhCC
Confidence 566666643221111144444444322 1111133455544332 12688888899999999777666667778887
Q ss_pred CC--CHHHHHHHHHHHHHcCCCeeEeeeec---CCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 195 AH--GLKEVYEAIEIVKLCGVENWSLDLIS---SLPHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 195 ~~--t~~~~~~ai~~~~~~G~~~v~~DlI~---GlPgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
.. ..+.+.++++.+++.|.. |.++++. + +.-+++.+.+.++.+.+++++.|++-.
T Consensus 131 s~~e~l~~~~~~v~~ak~~G~~-v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Ga~~i~l~D 190 (337)
T 3ble_A 131 TPKEFFTDVSFVIEYAIKSGLK-INVYLEDWSNG-FRNSPDYVKSLVEHLSKEHIERIFLPD 190 (337)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCE-EEEEEETHHHH-HHHCHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHCCCE-EEEEEEECCCC-CcCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 53 456777888999999997 8888775 2 123577788888999999999877654
No 48
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=88.74 E-value=0.55 Score=39.97 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=49.8
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
.++.-| ...++...++++..|.+-. .+...++.|++.|||..... .+..+.|.-++.|| ++
T Consensus 42 ~iL~~l-~~~~~t~~eLa~~l~~~~~-~vs~~l~~Le~~Glv~r~~~----------------~~~~D~R~~~~~lT-~~ 102 (151)
T 3kp7_A 42 HVLNML-SIEALTVGQITEKQGVNKA-AVSRRVKKLLNAELVKLEKP----------------DSNTDQRLKIIKLS-NK 102 (151)
T ss_dssp HHHHHH-HHSCBCHHHHHHHHCSCSS-HHHHHHHHHHHTTSEEC---------------------------CCBEEC-HH
T ss_pred HHHHHH-HcCCcCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEEeeCC----------------CCCCCCCeeEEEEC-Hh
Confidence 344555 6789999999999998854 46788999999999985210 00012344578997 99
Q ss_pred hhchHHHHHHHH
Q 012112 454 GFLLSNELISHA 465 (471)
Q Consensus 454 G~~~~n~i~~~~ 465 (471)
|..+.+.+...+
T Consensus 103 G~~~~~~~~~~~ 114 (151)
T 3kp7_A 103 GKKYIKERKAIM 114 (151)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988765443
No 49
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=88.59 E-value=1.2 Score=37.65 Aligned_cols=71 Identities=10% Similarity=0.147 Sum_probs=52.0
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
.++..|....++...++.+.+|.+-. .+...++.|++.|||....+. .+.|.-++.|| ++
T Consensus 44 ~iL~~l~~~~~~t~~ela~~l~~~~~-~vs~~l~~Le~~Glv~r~~~~------------------~d~R~~~~~lT-~~ 103 (152)
T 3bj6_A 44 AILEGLSLTPGATAPQLGAALQMKRQ-YISRILQEVQRAGLIERRTNP------------------EHARSHRYWLT-PR 103 (152)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEECCS------------------SSTTSCEEEEC-HH
T ss_pred HHHHHHHhCCCCCHHHHHHHHCCCHH-HHHHHHHHHHHCCCeeecCCc------------------ccccceeeEEC-hh
Confidence 34444555568999999999999854 567889999999999875321 12344578997 99
Q ss_pred hhchHHHHHHH
Q 012112 454 GFLLSNELISH 464 (471)
Q Consensus 454 G~~~~n~i~~~ 464 (471)
|..+.+.+...
T Consensus 104 G~~~~~~~~~~ 114 (152)
T 3bj6_A 104 GEAIITAIRAD 114 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 99988776443
No 50
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=88.51 E-value=1.2 Score=39.76 Aligned_cols=78 Identities=12% Similarity=0.112 Sum_probs=55.5
Q ss_pred CCHhhHHHHHHHHhccc--cCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhccc
Q 012112 365 IDAKDLAMDVLMLSFRT--ARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGN 442 (471)
Q Consensus 365 l~~~~~~~e~~~~~Lr~--~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~ 442 (471)
++..+ ..++..|.. ..|+...++++..|.+-. .+...++.|++.|||....+. ...
T Consensus 39 lt~~q---~~vL~~L~~~~~~~~t~~eLa~~l~is~~-tvs~~l~~Le~~GlV~r~~~~------------------~Dr 96 (189)
T 3nqo_A 39 LTSRQ---YMTILSILHLPEEETTLNNIARKMGTSKQ-NINRLVANLEKNGYVDVIPSP------------------HDK 96 (189)
T ss_dssp SCHHH---HHHHHHHHHSCGGGCCHHHHHHHHTSCHH-HHHHHHHHHHHTTSEEEEECS------------------SCS
T ss_pred CCHHH---HHHHHHHHhccCCCcCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEEeccCC------------------CCC
Confidence 55543 233444443 468999999999999864 567889999999999875321 134
Q ss_pred ccceeeecCchhhchHHHHHHHH
Q 012112 443 RLAYFRLSDPEGFLLSNELISHA 465 (471)
Q Consensus 443 ~~~~~~lt~~~G~~~~n~i~~~~ 465 (471)
|.-++.|| ++|..+.+.+...+
T Consensus 97 R~~~l~LT-~~G~~~~~~~~~~~ 118 (189)
T 3nqo_A 97 RAINVKVT-DLGKKVMVTCSRTG 118 (189)
T ss_dssp SCEEEEEC-HHHHHHHHHHHHHH
T ss_pred CeeEEEEC-HHHHHHHHHHHHHH
Confidence 55579997 99999998765443
No 51
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=88.42 E-value=3.5 Score=40.41 Aligned_cols=131 Identities=15% Similarity=0.084 Sum_probs=78.5
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecC----CCCC---------CH
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISS----LPHQ---------TP 229 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~G----lPgq---------T~ 229 (471)
.+.++.|+++|+|.|-+.+ -.++. +-..+.+.+.++++.++++|++ |-+||-++ -||. +.
T Consensus 30 ~d~~~ilk~~G~N~VRi~~-w~~P~-----~g~~~~~~~~~~~~~A~~~Glk-V~ld~Hysd~WadPg~Q~~p~~W~~~~ 102 (332)
T 1hjs_A 30 QPLENILAANGVNTVRQRV-WVNPA-----DGNYNLDYNIAIAKRAKAAGLG-VYIDFHYSDTWADPAHQTMPAGWPSDI 102 (332)
T ss_dssp CCHHHHHHHTTCCEEEEEE-CSSCT-----TCTTSHHHHHHHHHHHHHTTCE-EEEEECCSSSCCBTTBCBCCTTCCCSH
T ss_pred ccHHHHHHHCCCCEEEEee-eeCCC-----CCcCCHHHHHHHHHHHHHCCCE-EEEEeccCCCcCCccccCCccccccch
Confidence 4679999999999888876 23333 3344789999999999999998 99998653 2532 22
Q ss_pred HHH--------HHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCC--Cceeccc
Q 012112 230 QMW--------EESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAG--YRHYEIS 299 (471)
Q Consensus 230 e~~--------~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~G--y~~yeis 299 (471)
+.+ .+.++.+.+.+.. +..+..-.|... .-....|. ....+...+++..+.+..++.. -...-+.
T Consensus 103 ~~~~~~~~~yt~~vl~~l~~~g~~-~~~v~vGNEi~~--g~~w~~g~--~~~~~~~~~l~~~~~~avR~~~~~p~~~v~i 177 (332)
T 1hjs_A 103 DNLSWKLYNYTLDAANKLQNAGIQ-PTIVSIGNEIRA--GLLWPTGR--TENWANIARLLHSAAWGIKDSSLSPKPKIMI 177 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC-CSEEEESSSGGG--EETBTTEE--TTCHHHHHHHHHHHHHHHHTSCCSSCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCC-CCEEEEeecccc--cccCcCCC--ccCHHHHHHHHHHHHHHHHHhccCCCCeEEE
Confidence 222 2344454444422 222222222110 00000121 1356778888998888888776 5545566
Q ss_pred cccCCC
Q 012112 300 SYGEDG 305 (471)
Q Consensus 300 ~fa~~g 305 (471)
+++.++
T Consensus 178 h~~~~~ 183 (332)
T 1hjs_A 178 HLDNGW 183 (332)
T ss_dssp EESCTT
T ss_pred EeCCcc
Confidence 666653
No 52
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=88.36 E-value=4.7 Score=39.53 Aligned_cols=130 Identities=17% Similarity=0.135 Sum_probs=77.4
Q ss_pred CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecC----CCC----------C
Q 012112 162 DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISS----LPH----------Q 227 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~G----lPg----------q 227 (471)
..+.++.|+++|+|.|-+.|. .++. +-..+.+.+.+.++.++++|++ |-+||-++ -|+ .
T Consensus 29 ~~~~~~ilk~~G~n~vRlri~-v~P~-----~g~~d~~~~~~~~~~ak~~Gl~-v~ld~hysd~wadP~~q~~p~~W~~~ 101 (334)
T 1fob_A 29 TQALETILADAGINSIRQRVW-VNPS-----DGSYDLDYNLELAKRVKAAGMS-LYLDLHLSDTWADPSDQTTPSGWSTT 101 (334)
T ss_dssp BCCHHHHHHHHTCCEEEEEEC-SCCT-----TCTTCHHHHHHHHHHHHHTTCE-EEEEECCSSSCCBTTBCBCCTTSCSS
T ss_pred CchHHHHHHHcCCCEEEEEEE-ECCC-----CCccCHHHHHHHHHHHHHCCCE-EEEEeccCCCCCCcccccCccccccC
Confidence 356799999999998888763 2222 2235789999999999999998 99998762 243 2
Q ss_pred CHHHHH--------HHHHHHHhCC--CCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCC--Cce
Q 012112 228 TPQMWE--------ESLRRTVGAQ--PKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAG--YRH 295 (471)
Q Consensus 228 T~e~~~--------~~l~~~~~l~--p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~G--y~~ 295 (471)
+.+++. ..++.+.+.+ |+.+++-. |+.. .-....|.. ...+..++++..+.+..++.. -..
T Consensus 102 ~~~~~~~~~~~yt~~v~~~l~~~g~~v~~v~vGN---E~~~--G~lwp~g~~--~~~~~l~~~~~~a~~avr~~~~~p~~ 174 (334)
T 1fob_A 102 DLGTLKWQLYNYTLEVCNTFAENDIDIEIISIGN---EIRA--GLLWPLGET--SSYSNIGALLHSGAWGVKDSNLATTP 174 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEESS---SGGG--CSSBTTTST--TCHHHHHHHHHHHHHHHHTSCCSSCC
T ss_pred ChHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEee---cCcc--cccCCCCcc--hhHHHHHHHHHHHHHHHHHhccCCCC
Confidence 443433 2333334433 44443322 2211 001112222 245678888888888888865 443
Q ss_pred eccccccCCC
Q 012112 296 YEISSYGEDG 305 (471)
Q Consensus 296 yeis~fa~~g 305 (471)
.-+.+++.++
T Consensus 175 ~v~~h~~~~~ 184 (334)
T 1fob_A 175 KIMIHLDDGW 184 (334)
T ss_dssp EEEEEESCTT
T ss_pred eEEEEcCCcC
Confidence 3345666543
No 53
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=88.22 E-value=3.1 Score=39.96 Aligned_cols=118 Identities=16% Similarity=0.203 Sum_probs=74.4
Q ss_pred eeEEEEcC-CC-CCC--CC-HHHHHHHH---HHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEE-EEccCCCC
Q 012112 115 LETVFFGG-GT-PSL--VP-PRFVSSIL---DTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRV-SLGVQAFQ 185 (471)
Q Consensus 115 v~~i~fGG-GT-ps~--l~-~~~l~~ll---~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gvnrv-siGvQS~~ 185 (471)
.+-|-+|| +| |.. .+ .++++++. +.+++.+ +..+++. +...+.++.--++|..-| ++.-. .+
T Consensus 52 AdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~----~~piSID----T~~~~va~aAl~aGa~iINdvsg~-~d 122 (282)
T 1aj0_A 52 ATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRF----EVWISVD----TSKPEVIRESAKVGAHIINDIRSL-SE 122 (282)
T ss_dssp CSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHC----CCEEEEE----CCCHHHHHHHHHTTCCEEEETTTT-CS
T ss_pred CCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhc----CCeEEEe----CCCHHHHHHHHHcCCCEEEECCCC-CC
Confidence 46677888 66 541 12 45665555 4444443 3456654 567777877777786554 33333 56
Q ss_pred HHHHHHc-----------CC--CCC--------------HHHHHHHHHHHHHcCCC--eeEeeeecCCCCCCHHHHHHHH
Q 012112 186 DELLKSC-----------GR--AHG--------------LKEVYEAIEIVKLCGVE--NWSLDLISSLPHQTPQMWEESL 236 (471)
Q Consensus 186 d~~L~~l-----------~R--~~t--------------~~~~~~ai~~~~~~G~~--~v~~DlI~GlPgqT~e~~~~~l 236 (471)
+++++.+ .+ +.+ .+...+.++.+.++|++ +|-+|--+|+ +.|.++-.+.|
T Consensus 123 ~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg~gf-~k~~~~n~~ll 201 (282)
T 1aj0_A 123 PGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGF-GKNLSHNYSLL 201 (282)
T ss_dssp TTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTS-SCCHHHHHHHH
T ss_pred HHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCc-ccCHHHHHHHH
Confidence 6666541 12 122 56677888889999998 7999999998 77887666666
Q ss_pred HHHHhC
Q 012112 237 RRTVGA 242 (471)
Q Consensus 237 ~~~~~l 242 (471)
+.+.++
T Consensus 202 ~~l~~~ 207 (282)
T 1aj0_A 202 ARLAEF 207 (282)
T ss_dssp HTGGGG
T ss_pred HHHHHH
Confidence 655544
No 54
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=88.15 E-value=2.3 Score=38.96 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=46.1
Q ss_pred ccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHH
Q 012112 381 TARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNE 460 (471)
Q Consensus 381 ~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~ 460 (471)
...++...++++++|.+.. .....+++|.++||+..... ..+.|| ++|+.++..
T Consensus 17 ~~~~~~~~~lA~~l~vs~~-tvs~~l~~Le~~GlV~r~~~------------------------~~i~LT-~~G~~~~~~ 70 (214)
T 3hrs_A 17 RHNKITNKEIAQLMQVSPP-AVTEMMKKLLAEELLIKDKK------------------------AGYLLT-DLGLKLVSD 70 (214)
T ss_dssp SCSCCCHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEETT------------------------TEEEEC-HHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCCChh-HHHHHHHHHHHCCCEEEecC------------------------CCeEEC-HHHHHHHHH
Confidence 3567899999999999864 57789999999999987542 158997 999999988
Q ss_pred HHH
Q 012112 461 LIS 463 (471)
Q Consensus 461 i~~ 463 (471)
+..
T Consensus 71 ~~~ 73 (214)
T 3hrs_A 71 LYR 73 (214)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 55
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=88.03 E-value=1.4 Score=37.53 Aligned_cols=71 Identities=14% Similarity=0.121 Sum_probs=52.1
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
.++..|....++...++.+.+|.+-. .+...++.|++.|||....+. .+.|.-++.|| ++
T Consensus 48 ~iL~~l~~~~~~t~~ela~~l~is~~-tvs~~l~~Le~~Gli~r~~~~------------------~d~R~~~~~lT-~~ 107 (154)
T 2eth_A 48 YAFLYVALFGPKKMKEIAEFLSTTKS-NVTNVVDSLEKRGLVVREMDP------------------VDRRTYRVVLT-EK 107 (154)
T ss_dssp HHHHHHHHHCCBCHHHHHHHTTSCHH-HHHHHHHHHHHTTSEEEEECT------------------TTSSCEEEEEC-HH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEEeeCCC------------------CCcceeEEEEC-HH
Confidence 34445555568999999999999854 567889999999999875311 12344478997 99
Q ss_pred hhchHHHHHHH
Q 012112 454 GFLLSNELISH 464 (471)
Q Consensus 454 G~~~~n~i~~~ 464 (471)
|..+.+.+...
T Consensus 108 G~~~~~~~~~~ 118 (154)
T 2eth_A 108 GKEIFGEILSN 118 (154)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998876443
No 56
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=88.02 E-value=1.2 Score=36.91 Aligned_cols=71 Identities=13% Similarity=0.162 Sum_probs=51.7
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
.++..|....++...++.+..|.+.. .+...++.|++.|++....+. .+.|.-++.|| ++
T Consensus 33 ~iL~~l~~~~~~~~~ela~~l~~s~~-tvs~~l~~L~~~glv~~~~~~------------------~d~R~~~~~lT-~~ 92 (138)
T 3bpv_A 33 ACLLRIHREPGIKQDELATFFHVDKG-TIARTLRRLEESGFIEREQDP------------------ENRRRYILEVT-RR 92 (138)
T ss_dssp HHHHHHHHSTTCBHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEEEET------------------TEEEEEEEEEC-HH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEEeecCC------------------CCceeEEeeEC-Hh
Confidence 34445555678999999999999854 467789999999999864211 12334468997 99
Q ss_pred hhchHHHHHHH
Q 012112 454 GFLLSNELISH 464 (471)
Q Consensus 454 G~~~~n~i~~~ 464 (471)
|..+.+.+...
T Consensus 93 G~~~~~~~~~~ 103 (138)
T 3bpv_A 93 GEEIIPLILKV 103 (138)
T ss_dssp HHHTHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988776443
No 57
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=87.92 E-value=1 Score=37.32 Aligned_cols=78 Identities=10% Similarity=0.038 Sum_probs=54.6
Q ss_pred cCCHhhHHHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccc
Q 012112 364 HIDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNR 443 (471)
Q Consensus 364 ~l~~~~~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 443 (471)
.++..+ ..++..|....++...++.+.+|.+.. .+...++.|++.||+....+. .+.|
T Consensus 35 ~l~~~~---~~iL~~l~~~~~~t~~ela~~l~~~~~-tvs~~l~~L~~~glv~r~~~~------------------~d~R 92 (140)
T 2nnn_A 35 GLTPTQ---WAALVRLGETGPCPQNQLGRLTAMDAA-TIKGVVERLDKRGLIQRSADP------------------DDGR 92 (140)
T ss_dssp CCCHHH---HHHHHHHHHHSSBCHHHHHHHTTCCHH-HHHHHHHHHHHTTCEEEEEET------------------TEEE
T ss_pred CCCHHH---HHHHHHHHHcCCCCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEEeeCCC------------------CCCC
Confidence 355543 234445555568999999999999864 467789999999999864211 1233
Q ss_pred cceeeecCchhhchHHHHHHH
Q 012112 444 LAYFRLSDPEGFLLSNELISH 464 (471)
Q Consensus 444 ~~~~~lt~~~G~~~~n~i~~~ 464 (471)
.-++.|| ++|..+.+.+...
T Consensus 93 ~~~~~lT-~~G~~~~~~~~~~ 112 (140)
T 2nnn_A 93 RLLVSLS-PAGRAELEAGLAA 112 (140)
T ss_dssp EEEEEEC-HHHHHHHHHHHHH
T ss_pred eeeeEEC-HhHHHHHHHHHHH
Confidence 3468997 9999988776443
No 58
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=87.56 E-value=1.3 Score=38.08 Aligned_cols=71 Identities=18% Similarity=0.166 Sum_probs=51.8
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
.++..|....++...++.+.+|.+-. .+...++.|++.|||....+. .+.|.-++.|| ++
T Consensus 56 ~iL~~l~~~~~~t~~ela~~l~is~~-tvs~~l~~Le~~Gli~r~~~~------------------~d~R~~~~~lT-~~ 115 (162)
T 3cjn_A 56 RALAILSAKDGLPIGTLGIFAVVEQS-TLSRALDGLQADGLVRREVDS------------------DDQRSSRVYLT-PA 115 (162)
T ss_dssp HHHHHHHHSCSEEHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEEEC--------------------CCSSEEEEEC-HH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCChh-HHHHHHHHHHHCCCEEecCCC------------------CCCCeeEEEEC-HH
Confidence 34445555678999999999999854 467889999999999865311 12344578997 99
Q ss_pred hhchHHHHHHH
Q 012112 454 GFLLSNELISH 464 (471)
Q Consensus 454 G~~~~n~i~~~ 464 (471)
|..+.+.+...
T Consensus 116 G~~~~~~~~~~ 126 (162)
T 3cjn_A 116 GRAVYDRLWPH 126 (162)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988876444
No 59
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=87.37 E-value=1.2 Score=38.71 Aligned_cols=70 Identities=10% Similarity=0.119 Sum_probs=51.1
Q ss_pred HHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchh
Q 012112 375 LMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEG 454 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G 454 (471)
++..|....++...++.+..|.+.. .+...++.|++.|||....+. .+.|.-++.|| ++|
T Consensus 50 iL~~L~~~~~~t~~eLa~~l~is~~-tvs~~l~~Le~~GlV~r~~~~------------------~DrR~~~~~LT-~~G 109 (168)
T 2nyx_A 50 TLVILSNHGPINLATLATLLGVQPS-ATGRMVDRLVGAELIDRLPHP------------------TSRRELLAALT-KRG 109 (168)
T ss_dssp HHHHHHHHCSEEHHHHHHHHTSCHH-HHHHHHHHHHHTTSEEEEECS------------------SCSSCEEEEEC-HHH
T ss_pred HHHHHHHcCCCCHHHHHHHhCCCHH-HHHHHHHHHHHCCCEEeccCC------------------CCCCeeEEEEC-HHH
Confidence 4444445568999999999999864 467789999999999864321 12344578997 999
Q ss_pred hchHHHHHHH
Q 012112 455 FLLSNELISH 464 (471)
Q Consensus 455 ~~~~n~i~~~ 464 (471)
..+.+.+...
T Consensus 110 ~~~~~~~~~~ 119 (168)
T 2nyx_A 110 RDVVRQVTEH 119 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988765433
No 60
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=87.11 E-value=1.3 Score=37.07 Aligned_cols=71 Identities=10% Similarity=0.073 Sum_probs=51.4
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
.++..|....++...++.+.+|.+.. .+...++.|++.|+|....+. .+.|.-++.|| ++
T Consensus 37 ~iL~~l~~~~~~~~~~la~~l~~s~~-tvs~~l~~L~~~glv~r~~~~------------------~d~r~~~~~lT-~~ 96 (145)
T 2a61_A 37 DILQKIYFEGPKRPGELSVLLGVAKS-TVTGLVKRLEADGYLTRTPDP------------------ADRRAYFLVIT-RK 96 (145)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEEEET------------------TEEEEEEEEEC-HH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCch-hHHHHHHHHHHCCCeeecCCC------------------CCCceEEEEEC-HH
Confidence 34444545678999999999999864 567889999999999875211 12334468997 99
Q ss_pred hhchHHHHHHH
Q 012112 454 GFLLSNELISH 464 (471)
Q Consensus 454 G~~~~n~i~~~ 464 (471)
|..+.+.+...
T Consensus 97 G~~~~~~~~~~ 107 (145)
T 2a61_A 97 GEEVIEKVIER 107 (145)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988766443
No 61
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=86.93 E-value=5 Score=40.78 Aligned_cols=125 Identities=15% Similarity=0.126 Sum_probs=77.8
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGR 194 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R 194 (471)
++.|=.| .|.. ++...+ .++.+.+. + ....+..-++| +.+-++...++|+++|.+-+=+-+-.....+++
T Consensus 75 v~~IEvG--~P~a-sp~d~~-~~~~i~~~-~--~~~~v~~~~r~---~~~di~~A~~aG~~~V~i~~s~Sd~~~~~~l~~ 144 (423)
T 3ivs_A 75 VDYIELT--SPVA-SEQSRQ-DCEAICKL-G--LKCKILTHIRC---HMDDARVAVETGVDGVDVVIGTSQYLRKYSHGK 144 (423)
T ss_dssp CSEEEEC--CTTS-CHHHHH-HHHHHHTS-C--CSSEEEEEEES---CHHHHHHHHHTTCSEEEEEEEC-----------
T ss_pred CCEEEEe--eccc-CHHHHH-HHHHHHhc-C--CCCEEEEeecc---ChhhHHHHHHcCCCEEEEEeeccHHHHHHHcCC
Confidence 5555553 5754 554433 33444332 2 23456555555 466678888999999888765544333344554
Q ss_pred CC--CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 195 AH--GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 195 ~~--t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
.. ..+.+.++++.+++.|.. |.+++.-++ .-+++.+.+.++.+.+.+++.|++-.
T Consensus 145 s~~e~l~~~~~~v~~ak~~G~~-V~~~~eda~-r~d~~~~~~v~~~~~~~Ga~~i~l~D 201 (423)
T 3ivs_A 145 DMTYIIDSATEVINFVKSKGIE-VRFSSEDSF-RSDLVDLLSLYKAVDKIGVNRVGIAD 201 (423)
T ss_dssp --CHHHHHHHHHHHHHHTTTCE-EEEEEESGG-GSCHHHHHHHHHHHHHHCCSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHCCCE-EEEEEccCc-CCCHHHHHHHHHHHHHhCCCccccCC
Confidence 33 467788899999999997 888877665 45788888999999999998776544
No 62
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=86.91 E-value=8.4 Score=37.05 Aligned_cols=128 Identities=10% Similarity=0.049 Sum_probs=81.5
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCC-HHHHHHHHHCCCCEEEEccCCCCHHHHHHcC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFD-ARKMEELMDLGVNRVSLGVQAFQDELLKSCG 193 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~-~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~ 193 (471)
++.|=.|. |.. ++...+.+ ..+.+.. ++..++.-++...-+ +..++.++.+|+.+|.+-+=+-+-...+.++
T Consensus 41 v~~IE~g~--p~~-~~~d~e~v-~~i~~~~---~~~~i~~l~~~~~~di~~a~~~~~~ag~~~v~i~~~~Sd~~~~~nl~ 113 (293)
T 3ewb_X 41 IDVIEAGF--PIS-SPGDFECV-KAIAKAI---KHCSVTGLARCVEGDIDRAEEALKDAVSPQIHIFLATSDVHMEYKLK 113 (293)
T ss_dssp CSEEEEEC--GGG-CHHHHHHH-HHHHHHC---CSSEEEEEEESSHHHHHHHHHHHTTCSSEEEEEEEECSHHHHHHTTC
T ss_pred CCEEEEeC--CCC-CccHHHHH-HHHHHhc---CCCEEEEEecCCHHHHHHHHHHHhhcCCCEEEEEecCcHHHHHHHhC
Confidence 55555553 543 55555553 4444432 456777666431000 2233444558999999877554445556677
Q ss_pred CCC--CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 194 RAH--GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 194 R~~--t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
+.. ..+.+.++++.+++.|.. |.+++..+ +.-+++.+.+.++.+.+++++.|++-.
T Consensus 114 ~s~~e~l~~~~~~v~~a~~~g~~-v~~~~~d~-~~~~~~~~~~~~~~~~~~G~~~i~l~D 171 (293)
T 3ewb_X 114 MSRAEVLASIKHHISYARQKFDV-VQFSPEDA-TRSDRAFLIEAVQTAIDAGATVINIPD 171 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSC-EEEEEETG-GGSCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHhCCCE-EEEEeccC-CCCCHHHHHHHHHHHHHcCCCEEEecC
Confidence 653 456678888889999987 77776654 235778889999999999999776553
No 63
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=86.78 E-value=1 Score=37.54 Aligned_cols=71 Identities=10% Similarity=0.033 Sum_probs=51.7
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
.++..|....++...++++.+|.+.. .+...++.|++.|||....+. .+.|.-++.|| ++
T Consensus 40 ~iL~~l~~~~~~t~~ela~~l~~s~~-~vs~~l~~Le~~glv~r~~~~------------------~d~R~~~~~lT-~~ 99 (142)
T 2fbi_A 40 RVIRILRQQGEMESYQLANQACILRP-SMTGVLARLERDGIVRRWKAP------------------KDQRRVYVNLT-EK 99 (142)
T ss_dssp HHHHHHHHHCSEEHHHHHHHTTCCHH-HHHHHHHHHHHTTSEEEEEET------------------TEEEEEEEEEC-HH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCHh-HHHHHHHHHHHCCCEEeecCC------------------CCCCeeEEEEC-HH
Confidence 34455555678999999999999854 567889999999999865211 12344468997 99
Q ss_pred hhchHHHHHHH
Q 012112 454 GFLLSNELISH 464 (471)
Q Consensus 454 G~~~~n~i~~~ 464 (471)
|..+.+.+...
T Consensus 100 G~~~~~~~~~~ 110 (142)
T 2fbi_A 100 GQQCFVSMSGD 110 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998776443
No 64
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=86.70 E-value=1.4 Score=34.31 Aligned_cols=73 Identities=10% Similarity=0.071 Sum_probs=51.2
Q ss_pred HHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchh
Q 012112 375 LMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEG 454 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G 454 (471)
++..|....++...++++.+|.+.. .+...++.|++.|++...... .+.|.-+++|| ++|
T Consensus 21 iL~~L~~~~~~~~~ela~~l~is~~-tvs~~l~~L~~~gli~~~~~~------------------~~~r~~~~~lt-~~g 80 (100)
T 1ub9_A 21 IMIFLLPRRKAPFSQIQKVLDLTPG-NLDSHIRVLERNGLVKTYKVI------------------ADRPRTVVEIT-DFG 80 (100)
T ss_dssp HHHHHHHHSEEEHHHHHHHTTCCHH-HHHHHHHHHHHTTSEEEEEEC------------------SSSCEEEEEEC-HHH
T ss_pred HHHHHHhcCCcCHHHHHHHHCcCHH-HHHHHHHHHHHCCCEEEEecC------------------CCcceEEEEEC-HHH
Confidence 3444444567899999999999865 467789999999999853210 01233468997 999
Q ss_pred hchHHHHHHHHHh
Q 012112 455 FLLSNELISHAFG 467 (471)
Q Consensus 455 ~~~~n~i~~~~~~ 467 (471)
......++..+-.
T Consensus 81 ~~~~~~~~~~~~~ 93 (100)
T 1ub9_A 81 MEEAKRFLSSLKA 93 (100)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8877777665544
No 65
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=86.61 E-value=1.4 Score=37.71 Aligned_cols=70 Identities=14% Similarity=0.158 Sum_probs=48.4
Q ss_pred HHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchh
Q 012112 375 LMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEG 454 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G 454 (471)
++..|....++...++.+..|.+.. .+...++.|++.|||....+. .+.|.-++.|| ++|
T Consensus 54 iL~~l~~~~~~t~~ela~~l~is~~-tvs~~l~~Le~~glv~r~~~~------------------~d~R~~~~~lT-~~G 113 (162)
T 2fa5_A 54 VITILALYPGSSASEVSDRTAMDKV-AVSRAVARLLERGFIRRETHG------------------DDRRRSMLALS-PAG 113 (162)
T ss_dssp HHHHHHHSTTCCHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEC---------------------------CCCEEC-HHH
T ss_pred HHHHHHhCCCCCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEeeecCC------------------CCCCeeEEEEC-HHH
Confidence 4444555678999999999999864 467889999999999864210 12344578997 999
Q ss_pred hchHHHHHHH
Q 012112 455 FLLSNELISH 464 (471)
Q Consensus 455 ~~~~n~i~~~ 464 (471)
..+.+.+...
T Consensus 114 ~~~~~~~~~~ 123 (162)
T 2fa5_A 114 RQVYETVAPL 123 (162)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988765443
No 66
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=86.55 E-value=2.9 Score=35.03 Aligned_cols=67 Identities=9% Similarity=0.108 Sum_probs=48.8
Q ss_pred HHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeec
Q 012112 371 AMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLS 450 (471)
Q Consensus 371 ~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt 450 (471)
..+.+..-+....++...++++.+|.+.. .+...++.|++.|+|....+ ..++||
T Consensus 9 ~L~~i~~l~~~~~~~~~~ela~~l~vs~~-tvs~~l~~Le~~Glv~r~~~------------------------~~~~LT 63 (142)
T 1on2_A 9 YIEQIYMLIEEKGYARVSDIAEALAVHPS-SVTKMVQKLDKDEYLIYEKY------------------------RGLVLT 63 (142)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHTSCHH-HHHHHHHHHHHTTSEEEETT------------------------TEEEEC
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHhCCCHH-HHHHHHHHHHHCCCEEEeeC------------------------ceEEEc
Confidence 33444433344568999999999999854 46778999999999986432 257896
Q ss_pred CchhhchHHHHHH
Q 012112 451 DPEGFLLSNELIS 463 (471)
Q Consensus 451 ~~~G~~~~n~i~~ 463 (471)
++|..++..+..
T Consensus 64 -~~g~~~~~~~~~ 75 (142)
T 1on2_A 64 -SKGKKIGKRLVY 75 (142)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHH
Confidence 999988876543
No 67
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=86.50 E-value=1.1 Score=37.87 Aligned_cols=71 Identities=17% Similarity=0.175 Sum_probs=47.2
Q ss_pred HHHhcc-ccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 375 LMLSFR-TARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 375 ~~~~Lr-~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
++..|. ...++...++++..|.+-. .+...++.|++.|||....+. .+.|.-.+.|| ++
T Consensus 44 vL~~l~~~~~~~t~~eLa~~l~i~~~-tvs~~l~~Le~~Glv~r~~~~------------------~D~R~~~~~LT-~~ 103 (150)
T 3fm5_A 44 VLVLACEQAEGVNQRGVAATMGLDPS-QIVGLVDELEERGLVVRTLDP------------------SDRRNKLIAAT-EE 103 (150)
T ss_dssp HHHHHHHSTTCCCSHHHHHHHTCCHH-HHHHHHHHHHTTTSEEC-----------------------------CEEC-HH
T ss_pred HHHHHHhCCCCcCHHHHHHHHCCCHh-HHHHHHHHHHHCCCEEeeCCc------------------cccchheeeEC-HH
Confidence 344443 3347899999999999864 567889999999999864211 12344468997 99
Q ss_pred hhchHHHHHHHH
Q 012112 454 GFLLSNELISHA 465 (471)
Q Consensus 454 G~~~~n~i~~~~ 465 (471)
|..+.+.+...+
T Consensus 104 G~~~~~~~~~~~ 115 (150)
T 3fm5_A 104 GRRLRDDAKARV 115 (150)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998875443
No 68
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=86.13 E-value=2.2 Score=35.38 Aligned_cols=65 Identities=11% Similarity=0.024 Sum_probs=48.5
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
.++..|....++...++.+..|.+.. .+...++.|++.||+....+. .+.|.-++.|| ++
T Consensus 35 ~iL~~l~~~~~~~~~ela~~l~is~~-~vs~~l~~L~~~gli~~~~~~------------------~d~r~~~~~lT-~~ 94 (142)
T 3bdd_A 35 SILQTLLKDAPLHQLALQERLQIDRA-AVTRHLKLLEESGYIIRKRNP------------------DNQREVLVWPT-EQ 94 (142)
T ss_dssp HHHHHHHHHCSBCHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEEECS------------------SSTTCEEEEEC-HH
T ss_pred HHHHHHHhCCCCCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEEecCCC------------------CCCCeeEEEEC-HH
Confidence 34555555678999999999999864 467789999999999865321 12344478997 99
Q ss_pred hhchH
Q 012112 454 GFLLS 458 (471)
Q Consensus 454 G~~~~ 458 (471)
|..+.
T Consensus 95 G~~~~ 99 (142)
T 3bdd_A 95 AREAL 99 (142)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99887
No 69
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=86.08 E-value=3.7 Score=40.53 Aligned_cols=100 Identities=13% Similarity=0.129 Sum_probs=74.8
Q ss_pred HHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 135 SILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 135 ~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
+.++.+++.. ++..+.+-++|+.-..+.++...++|++.+.+.. +.++ .+.+.+.++.+++.|+.
T Consensus 71 e~l~~i~~~~---~~~~i~~l~~p~~~~~~~i~~a~~aGvd~v~I~~-~~s~-----------~~~~~~~i~~ak~~G~~ 135 (345)
T 1nvm_A 71 EYIEAVAGEI---SHAQIATLLLPGIGSVHDLKNAYQAGARVVRVAT-HCTE-----------ADVSKQHIEYARNLGMD 135 (345)
T ss_dssp HHHHHHHTTC---SSSEEEEEECBTTBCHHHHHHHHHHTCCEEEEEE-ETTC-----------GGGGHHHHHHHHHHTCE
T ss_pred HHHHHHHhhC---CCCEEEEEecCCcccHHHHHHHHhCCcCEEEEEE-eccH-----------HHHHHHHHHHHHHCCCE
Confidence 3455555432 4567877767876678999999999999888864 3332 25678889999999997
Q ss_pred eeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 215 NWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 215 ~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
+...++-. |.-+++.+.+.++.+.+++++.|++-.
T Consensus 136 -v~~~~~~a-~~~~~e~~~~ia~~~~~~Ga~~i~l~D 170 (345)
T 1nvm_A 136 -TVGFLMMS-HMIPAEKLAEQGKLMESYGATCIYMAD 170 (345)
T ss_dssp -EEEEEEST-TSSCHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred -EEEEEEeC-CCCCHHHHHHHHHHHHHCCCCEEEECC
Confidence 77776544 677889999999999999998777654
No 70
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=85.73 E-value=1.1 Score=37.13 Aligned_cols=70 Identities=13% Similarity=0.166 Sum_probs=50.6
Q ss_pred HHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchh
Q 012112 375 LMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEG 454 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G 454 (471)
++..|....++...++++..|.+.. .+...++.|++.||+....+. .+.|.-++.|| ++|
T Consensus 38 iL~~l~~~~~~~~~ela~~l~~~~~-tvs~~l~~L~~~gli~r~~~~------------------~d~r~~~~~lT-~~G 97 (139)
T 3bja_A 38 VIQVLAKSGKVSMSKLIENMGCVPS-NMTTMIQRMKRDGYVMTEKNP------------------NDQRETLVYLT-KKG 97 (139)
T ss_dssp HHHHHHHSCSEEHHHHHHHCSSCCT-THHHHHHHHHHTTSEEEEECS------------------SCTTCEEEEEC-HHH
T ss_pred HHHHHHHcCCcCHHHHHHHHCCChh-HHHHHHHHHHHCCCeeeccCC------------------CCCceeEEEEC-HHH
Confidence 4444555678999999999998754 456789999999999864211 12344478997 999
Q ss_pred hchHHHHHHH
Q 012112 455 FLLSNELISH 464 (471)
Q Consensus 455 ~~~~n~i~~~ 464 (471)
..+...+...
T Consensus 98 ~~~~~~~~~~ 107 (139)
T 3bja_A 98 EETKKQVDVQ 107 (139)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998776544
No 71
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=85.44 E-value=1.4 Score=36.95 Aligned_cols=71 Identities=10% Similarity=0.102 Sum_probs=51.5
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
.++..|....+ ...++++..|.+.. .+...++.|++.|||....+. .+.|.-++.|| ++
T Consensus 41 ~iL~~l~~~~~-~~~~la~~l~~~~~-tvs~~l~~Le~~Glv~r~~~~------------------~D~R~~~~~LT-~~ 99 (144)
T 3f3x_A 41 SILKATSEEPR-SMVYLANRYFVTQS-AITAAVDKLEAKGLVRRIRDS------------------KDRRIVIVEIT-PK 99 (144)
T ss_dssp HHHHHHHHSCE-EHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEEEET------------------TEEEEEEEEEC-HH
T ss_pred HHHHHHHHCCC-CHHHHHHHHCCChh-HHHHHHHHHHHCCCEEeccCC------------------CCCceEEEEEC-HH
Confidence 34445555566 89999999999865 467899999999999865311 12344478997 99
Q ss_pred hhchHHHHHHHH
Q 012112 454 GFLLSNELISHA 465 (471)
Q Consensus 454 G~~~~n~i~~~~ 465 (471)
|..+...+...+
T Consensus 100 G~~~~~~~~~~~ 111 (144)
T 3f3x_A 100 GRQVLLEANEVL 111 (144)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988765544
No 72
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=85.43 E-value=0.48 Score=40.20 Aligned_cols=72 Identities=14% Similarity=0.088 Sum_probs=45.0
Q ss_pred HHHHhcccc--CCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecC
Q 012112 374 VLMLSFRTA--RGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSD 451 (471)
Q Consensus 374 ~~~~~Lr~~--~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~ 451 (471)
.++..|... .|+...++++..|.+.. .+...++.|++.|||....+. .+.|.-++.||
T Consensus 45 ~vL~~l~~~~~~~~t~~eLa~~l~~~~~-~vs~~l~~L~~~Glv~r~~~~------------------~DrR~~~~~LT- 104 (148)
T 3jw4_A 45 RMIGYIYENQESGIIQKDLAQFFGRRGA-SITSMLQGLEKKGYIERRIPE------------------NNARQKNIYVL- 104 (148)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHC-------CHHHHHHHHHHTTSBCCC--------------------------CCCCBC-
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHCCChh-HHHHHHHHHHHCCCEEeeCCC------------------CCchhheeeEC-
Confidence 344444444 78999999999988753 456789999999999754211 12445578997
Q ss_pred chhhchHHHHHHHH
Q 012112 452 PEGFLLSNELISHA 465 (471)
Q Consensus 452 ~~G~~~~n~i~~~~ 465 (471)
++|..+.+.+...+
T Consensus 105 ~~G~~~~~~~~~~~ 118 (148)
T 3jw4_A 105 PKGAALVEEFNNIF 118 (148)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988765543
No 73
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=85.39 E-value=1.9 Score=36.69 Aligned_cols=63 Identities=11% Similarity=0.097 Sum_probs=47.0
Q ss_pred cCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHH
Q 012112 382 ARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNEL 461 (471)
Q Consensus 382 ~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i 461 (471)
..++...++.+..|.+-. .+...++.|++.|||....+. .+.|.-.|.|| ++|..+.+.+
T Consensus 49 ~~~~t~~eLa~~l~~~~~-tvs~~v~~Le~~Glv~r~~~~------------------~DrR~~~l~LT-~~G~~~~~~~ 108 (147)
T 4b8x_A 49 SGELPMSKIGERLMVHPT-SVTNTVDRLVRSGLVAKRPNP------------------NDGRGTLATIT-DKGREVVEAA 108 (147)
T ss_dssp GGEEEHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEEECC----------------------CEEEEEC-HHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHH-HHHHHHHHHHhCCCEEEeecC------------------CcCceeEEEEC-HHHHHHHHHH
Confidence 445899999999999854 567889999999999865321 13455579997 9999998876
Q ss_pred HHH
Q 012112 462 ISH 464 (471)
Q Consensus 462 ~~~ 464 (471)
...
T Consensus 109 ~~~ 111 (147)
T 4b8x_A 109 TRD 111 (147)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 74
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=85.22 E-value=2.3 Score=35.54 Aligned_cols=68 Identities=12% Similarity=0.216 Sum_probs=47.6
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
.++..|.... +...++++.+|.+-. .+...++.|++.|||....+. .+.|.-++.|| ++
T Consensus 42 ~iL~~l~~~~-~t~~eLa~~l~~s~~-tvs~~l~~L~~~Glv~r~~~~------------------~d~R~~~~~lT-~~ 100 (146)
T 3tgn_A 42 HILMLLSEES-LTNSELARRLNVSQA-AVTKAIKSLVKEGMLETSKDS------------------KDARVIFYQLT-DL 100 (146)
T ss_dssp HHHHHHTTCC-CCHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEC----------------------------CCEEC-GG
T ss_pred HHHHHHHhCC-CCHHHHHHHHCCCHH-HHHHHHHHHHHCCCeEeccCC------------------CCCceeEEEEC-Hh
Confidence 4555555554 999999999999864 467899999999999864310 12344578997 99
Q ss_pred hhchHHHHH
Q 012112 454 GFLLSNELI 462 (471)
Q Consensus 454 G~~~~n~i~ 462 (471)
|..+...+.
T Consensus 101 g~~~~~~~~ 109 (146)
T 3tgn_A 101 ARPIAEEHH 109 (146)
T ss_dssp GHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988776
No 75
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=85.15 E-value=2.9 Score=32.76 Aligned_cols=70 Identities=11% Similarity=0.063 Sum_probs=51.7
Q ss_pred HHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchh
Q 012112 375 LMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEG 454 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G 454 (471)
++..|....++...++.+.+|.+.. .+...++.|++.|+|....+ . +.|..++.+| ++|
T Consensus 25 il~~l~~~~~~s~~ela~~l~is~~-tv~~~l~~L~~~glv~~~~~------------------~-~~r~~~~~~t-~~g 83 (109)
T 1sfx_A 25 IYSLLLERGGMRVSEIARELDLSAR-FVRDRLKVLLKRGFVRREIV------------------E-KGWVGYIYSA-EKP 83 (109)
T ss_dssp HHHHHHHHCCBCHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEEEE------------------E-SSSEEEEEEE-CCH
T ss_pred HHHHHHHcCCCCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEEEEee------------------c-CCceEEEEec-CcH
Confidence 3334444578999999999999864 46788999999999986431 1 3455678897 999
Q ss_pred hchHHHHHHHH
Q 012112 455 FLLSNELISHA 465 (471)
Q Consensus 455 ~~~~n~i~~~~ 465 (471)
..+.+.+...+
T Consensus 84 ~~~~~~~~~~~ 94 (109)
T 1sfx_A 84 EKVLKEFKSSI 94 (109)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888765544
No 76
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=84.97 E-value=1.7 Score=36.87 Aligned_cols=70 Identities=10% Similarity=0.130 Sum_probs=51.0
Q ss_pred HHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchh
Q 012112 375 LMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEG 454 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G 454 (471)
++..|....++...++.+.+|.+.. .+...++.|++.|||....+. .+.|.-++.|| ++|
T Consensus 42 iL~~l~~~~~~t~~ela~~l~~s~~-tvs~~l~~Le~~glv~r~~~~------------------~d~R~~~~~lT-~~G 101 (155)
T 1s3j_A 42 VLASLKKHGSLKVSEIAERMEVKPS-AVTLMADRLEQKNLIARTHNT------------------KDRRVIDLSLT-DEG 101 (155)
T ss_dssp HHHHHHHHSEEEHHHHHHHHTSCHH-HHHHHHHHHHHTTSEEEEECS------------------SCTTSEEEEEC-HHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEeecCCC------------------CCCceEEEEEC-HHH
Confidence 3444444568999999999999854 567789999999999865321 12344478997 999
Q ss_pred hchHHHHHHH
Q 012112 455 FLLSNELISH 464 (471)
Q Consensus 455 ~~~~n~i~~~ 464 (471)
..+.+.+...
T Consensus 102 ~~~~~~~~~~ 111 (155)
T 1s3j_A 102 DIKFEEVLAG 111 (155)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988776443
No 77
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=84.80 E-value=2.7 Score=32.24 Aligned_cols=63 Identities=6% Similarity=0.017 Sum_probs=49.9
Q ss_pred HHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeec
Q 012112 371 AMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLS 450 (471)
Q Consensus 371 ~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt 450 (471)
..+.|..-|....+....++++..|.+-.......|..|.++|+|...+. .|. .+.||
T Consensus 12 ~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~~~---------------------gRP-~w~LT 69 (79)
T 1xmk_A 12 IKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGT---------------------TPP-IWHLT 69 (79)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECS---------------------SSC-EEEEC
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEecCC---------------------CCC-CeEeC
Confidence 45566666788889999999999999986568899999999999986542 233 68996
Q ss_pred Cchhhc
Q 012112 451 DPEGFL 456 (471)
Q Consensus 451 ~~~G~~ 456 (471)
++|..
T Consensus 70 -~~g~~ 74 (79)
T 1xmk_A 70 -DKKRE 74 (79)
T ss_dssp -HHHHT
T ss_pred -HhHHh
Confidence 88864
No 78
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=84.68 E-value=1.3 Score=37.47 Aligned_cols=70 Identities=13% Similarity=0.066 Sum_probs=50.5
Q ss_pred HHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEE--ecCcccchhhhhhhhhhhhhhhcccccceeeecCc
Q 012112 375 LMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVIC--LDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDP 452 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~ 452 (471)
++..|....++...++.+..|.+.. .+...++.|++.|||.. ..+. .+.|.-+++|| +
T Consensus 46 iL~~l~~~~~~t~~eLa~~l~~~~~-tvs~~l~~Le~~Glv~r~~~~~~------------------~d~R~~~~~LT-~ 105 (154)
T 2qww_A 46 MINVIYSTPGISVADLTKRLIITGS-SAAANVDGLISLGLVVKLNKTIP------------------NDSMDLTLKLS-K 105 (154)
T ss_dssp HHHHHHHSTTEEHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEESCC--C------------------TTCTTCEEEEC-H
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEEecCcCCC------------------CCCceeEeEEC-H
Confidence 4444455578999999999999854 56788999999999987 3211 12344478997 9
Q ss_pred hhhchHHHHHHH
Q 012112 453 EGFLLSNELISH 464 (471)
Q Consensus 453 ~G~~~~n~i~~~ 464 (471)
+|..+.+.+...
T Consensus 106 ~G~~~~~~~~~~ 117 (154)
T 2qww_A 106 KGEDLSKRSTAN 117 (154)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHHhh
Confidence 999887766543
No 79
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=84.53 E-value=4 Score=32.70 Aligned_cols=65 Identities=11% Similarity=0.011 Sum_probs=46.7
Q ss_pred HHhccccCCCCHhhHHHHh-CCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchh
Q 012112 376 MLSFRTARGVDLKSFGETF-GCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEG 454 (471)
Q Consensus 376 ~~~Lr~~~gi~~~~~~~~f-g~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G 454 (471)
+..|. ..++...++.+.. |.+-. .+...++.|++.|+|...... .+.|.-+++|| ++|
T Consensus 20 L~~L~-~~~~~~~eLa~~l~~is~~-tls~~L~~Le~~GlI~r~~~~------------------~d~r~~~y~LT-~~G 78 (107)
T 2hzt_A 20 LXHLT-HGKKRTSELKRLMPNITQK-MLTQQLRELEADGVINRIVYN------------------QVPPKVEYELS-EYG 78 (107)
T ss_dssp HHHHT-TCCBCHHHHHHHCTTSCHH-HHHHHHHHHHHTTSEEEEEEC------------------SSSCEEEEEEC-TTG
T ss_pred HHHHH-hCCCCHHHHHHHhcCCCHH-HHHHHHHHHHHCCCEEEeecC------------------CCCCeEEEEEC-ccH
Confidence 33444 4568999999998 88854 577899999999999864311 12333468997 999
Q ss_pred hchHHHH
Q 012112 455 FLLSNEL 461 (471)
Q Consensus 455 ~~~~n~i 461 (471)
..+...+
T Consensus 79 ~~l~~~~ 85 (107)
T 2hzt_A 79 RSLEGIL 85 (107)
T ss_dssp GGGHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 80
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=84.06 E-value=4.8 Score=38.86 Aligned_cols=120 Identities=15% Similarity=0.102 Sum_probs=69.6
Q ss_pred eeEEEEcC-----CCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEE-EEccCCCCHHH
Q 012112 115 LETVFFGG-----GTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRV-SLGVQAFQDEL 188 (471)
Q Consensus 115 v~~i~fGG-----GTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gvnrv-siGvQS~~d~~ 188 (471)
.+-|-+|| |.+-+-..+++++++..|+..-.. +..+++. +.+.+.++.--++|..-| ++.-. .++++
T Consensus 66 AdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~--~vpiSID----T~~~~Va~aAl~aGa~iINdVsg~-~d~~m 138 (294)
T 2dqw_A 66 ADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSL--GVPVSVD----TRKPEVAEEALKLGAHLLNDVTGL-RDERM 138 (294)
T ss_dssp CSEEEEECC-----------CCHHHHHHHHHHHHHTT--CSCEEEE----CSCHHHHHHHHHHTCSEEECSSCS-CCHHH
T ss_pred CCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEE----CCCHHHHHHHHHhCCCEEEECCCC-CChHH
Confidence 46677887 222222235666666666554321 4456654 556666666666675433 22222 56666
Q ss_pred HHHc----------C-C---CCC--------------HHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHH
Q 012112 189 LKSC----------G-R---AHG--------------LKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTV 240 (471)
Q Consensus 189 L~~l----------~-R---~~t--------------~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~ 240 (471)
+..+ . + ..+ .+...+.++.+.++|+++|-+|--+|+ |.|.++-.+.|+.+.
T Consensus 139 ~~v~a~~~~~vVlmh~~eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~~IilDPG~Gf-~kt~~~n~~ll~~l~ 217 (294)
T 2dqw_A 139 VALAARHGVAAVVMHMPVPDPATMMAHARYRDVVAEVKAFLEAQARRALSAGVPQVVLDPGFGF-GKLLEHNLALLRRLD 217 (294)
T ss_dssp HHHHHHHTCEEEEECCSSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHHHTTCSCEEEECCTTS-SCCHHHHHHHHHTHH
T ss_pred HHHHHHhCCCEEEEcCCCCCCccccccCccccHHHHHHHHHHHHHHHHHHCCCCcEEEcCCCCc-ccCHHHHHHHHHHHH
Confidence 5431 1 1 122 345667788888999988999988887 888876666666654
Q ss_pred hC
Q 012112 241 GA 242 (471)
Q Consensus 241 ~l 242 (471)
++
T Consensus 218 ~~ 219 (294)
T 2dqw_A 218 EI 219 (294)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 81
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=83.94 E-value=1.5 Score=39.80 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=53.9
Q ss_pred CCHhhHHHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhccccc
Q 012112 365 IDAKDLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRL 444 (471)
Q Consensus 365 l~~~~~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 444 (471)
++..+ ..++..|....|+...++++..|.+.. .+...++.|++.|||....+. .+.|.
T Consensus 46 Lt~~q---~~iL~~L~~~~~~t~~eLa~~l~i~~s-tvs~~l~~Le~~GlV~r~~~~------------------~DrR~ 103 (207)
T 2fxa_A 46 LNINE---HHILWIAYQLNGASISEIAKFGVMHVS-TAFNFSKKLEERGYLRFSKRL------------------NDKRN 103 (207)
T ss_dssp CCHHH---HHHHHHHHHHTSEEHHHHHHHTTCCHH-HHHHHHHHHHHHTSEEEECC------------------------
T ss_pred CCHHH---HHHHHHHHHCCCcCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEEEecCC------------------CCCce
Confidence 55543 234445555578999999999999854 567789999999999875321 12445
Q ss_pred ceeeecCchhhchHHHHHHH
Q 012112 445 AYFRLSDPEGFLLSNELISH 464 (471)
Q Consensus 445 ~~~~lt~~~G~~~~n~i~~~ 464 (471)
-++.|| ++|..+.+.+...
T Consensus 104 ~~l~LT-~~G~~~~~~~~~~ 122 (207)
T 2fxa_A 104 TYVQLT-EEGTEVFWSLLEE 122 (207)
T ss_dssp CEEEEC-HHHHHHHHHHHHH
T ss_pred EEEEEC-HHHHHHHHHHHHH
Confidence 579997 9999998877644
No 82
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=83.83 E-value=5.1 Score=41.26 Aligned_cols=119 Identities=15% Similarity=0.149 Sum_probs=79.0
Q ss_pred eeEEEEcCCC-C----CCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec----------CCCCCHHHHHHHHHCCCCEEEE
Q 012112 115 LETVFFGGGT-P----SLVPPRFVSSILDTLTDKFGLSLDAEISMEMD----------PGTFDARKMEELMDLGVNRVSL 179 (471)
Q Consensus 115 v~~i~fGGGT-p----s~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~----------P~~l~~e~l~~l~~~Gvnrvsi 179 (471)
++.|=.|+|. + -+++++.. +.++.+++.. ++..+++-++ |+.+.+..++...++|++.|.+
T Consensus 44 v~~IE~g~~atF~~~~r~~~~d~~-e~l~~i~~~~---~~~~l~~l~R~~N~~G~~~~~ddv~~~~v~~a~~~Gvd~i~i 119 (464)
T 2nx9_A 44 YWSLECWGGATFDSCIRFLGEDPW-QRLRLLKQAM---PNTPLQMLLRGQNLLGYRHYADDVVDTFVERAVKNGMDVFRV 119 (464)
T ss_dssp CSEEEEEETTHHHHHHHTTCCCHH-HHHHHHHHHC---SSSCEEEEECGGGTTSSSCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEeCcCccccchhhccCCCHH-HHHHHHHHhC---CCCeEEEEeccccccCcccccchhhHHHHHHHHhCCcCEEEE
Confidence 6666666542 1 01233333 3355555543 3456666664 2223467788899999998887
Q ss_pred ccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeee--ecCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 180 GVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDL--ISSLPHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 180 GvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~Dl--I~GlPgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
-. +.++- +.+..+++.+++.|.. +.+++ ..|- .-+++.+.+.++.+.+++++.|++-.
T Consensus 120 f~-~~sd~-----------~ni~~~i~~ak~~G~~-v~~~i~~~~~~-~~~~e~~~~~a~~l~~~Gad~I~l~D 179 (464)
T 2nx9_A 120 FD-AMNDV-----------RNMQQALQAVKKMGAH-AQGTLCYTTSP-VHNLQTWVDVAQQLAELGVDSIALKD 179 (464)
T ss_dssp CC-TTCCT-----------HHHHHHHHHHHHTTCE-EEEEEECCCCT-TCCHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred EE-ecCHH-----------HHHHHHHHHHHHCCCE-EEEEEEeeeCC-CCCHHHHHHHHHHHHHCCCCEEEEcC
Confidence 54 33332 5678899999999986 76555 4564 45899999999999999999777654
No 83
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=83.73 E-value=3.6 Score=40.31 Aligned_cols=124 Identities=13% Similarity=0.082 Sum_probs=78.9
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHH----HHHHHCCCCEEEEccCCCCHHHHH
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKM----EELMDLGVNRVSLGVQAFQDELLK 190 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l----~~l~~~GvnrvsiGvQS~~d~~L~ 190 (471)
++.|=.| .|. .++...+.+ +.+.+.. ++..++.-+++. .+-+ +.++.+|+.+|.+-+=+-+-...+
T Consensus 42 v~~IE~g--~p~-~~~~d~e~v-~~i~~~~---~~~~i~~l~r~~---~~~i~~a~~al~~ag~~~v~i~~s~Sd~~~~~ 111 (325)
T 3eeg_A 42 VDVIEAG--FPV-SSPGDFNSV-VEITKAV---TRPTICALTRAK---EADINIAGEALRFAKRSRIHTGIGSSDIHIEH 111 (325)
T ss_dssp CSEEEEE--CTT-SCHHHHHHH-HHHHHHC---CSSEEEEECCSC---HHHHHHHHHHHTTCSSEEEEEEEECSHHHHC-
T ss_pred CCEEEEe--CCC-CCHhHHHHH-HHHHHhC---CCCEEEEeecCC---HHHHHHHHHhhcccCCCEEEEEecccHHHHHH
Confidence 4555554 565 367666654 4555443 355676665432 3333 444555999998866555555556
Q ss_pred HcCCC--CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 191 SCGRA--HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 191 ~l~R~--~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y 250 (471)
.+++. ...+.+.++++.+++.|.. |.++..++- --+++.+.+.++.+.+.+++.|++-
T Consensus 112 ~l~~s~~e~l~~~~~~v~~a~~~g~~-v~f~~~d~~-~~~~~~~~~~~~~~~~~G~~~i~l~ 171 (325)
T 3eeg_A 112 KLRSTRENILEMAVAAVKQAKKVVHE-VEFFCEDAG-RADQAFLARMVEAVIEAGADVVNIP 171 (325)
T ss_dssp ---CCCTTGGGTTHHHHHHHHTTSSE-EEEEEETGG-GSCHHHHHHHHHHHHHHTCSEEECC
T ss_pred HhCCCHHHHHHHHHHHHHHHHHCCCE-EEEEccccc-cchHHHHHHHHHHHHhcCCCEEEec
Confidence 66654 4678899999999999986 666655543 3467788888899999999866543
No 84
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=83.53 E-value=6.3 Score=32.70 Aligned_cols=65 Identities=12% Similarity=0.072 Sum_probs=47.4
Q ss_pred HHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecC
Q 012112 372 MDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSD 451 (471)
Q Consensus 372 ~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~ 451 (471)
...+..-.....++...++++++|.+.. .+...++.|++.||+.... . .++||
T Consensus 19 L~~l~~l~~~~~~~s~~ela~~l~is~~-tv~~~l~~Le~~Gli~r~~-~------------------------~~~Lt- 71 (139)
T 2x4h_A 19 LLTIKRYNDSGEGAKINRIAKDLKIAPS-SVFEEVSHLEEKGLVKKKE-D------------------------GVWIT- 71 (139)
T ss_dssp HHHHHHHHTTTSCBCHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEET-T------------------------EEEEC-
T ss_pred HHHHHHHHhcCCCcCHHHHHHHhCCChH-HHHHHHHHHHHCCCEEecC-C------------------------eEEEC-
Confidence 3444333344567999999999999854 4678899999999998643 1 47886
Q ss_pred chhhchHHHHHH
Q 012112 452 PEGFLLSNELIS 463 (471)
Q Consensus 452 ~~G~~~~n~i~~ 463 (471)
++|..++..+..
T Consensus 72 ~~g~~~~~~~~~ 83 (139)
T 2x4h_A 72 NNGTRSINYLIK 83 (139)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 899888776543
No 85
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=83.37 E-value=1 Score=46.33 Aligned_cols=77 Identities=12% Similarity=0.003 Sum_probs=58.2
Q ss_pred HHHHhcccc--CCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecC
Q 012112 374 VLMLSFRTA--RGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSD 451 (471)
Q Consensus 374 ~~~~~Lr~~--~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~ 451 (471)
.++..|... .|+...++.++.+.+-. .+...+++|+++|||.+..+. ...|.-.|.||
T Consensus 408 ~vl~~l~~~~~~~~~~~~l~~~~~~~~~-~~t~~~~~le~~g~v~r~~~~------------------~D~R~~~i~lT- 467 (487)
T 1hsj_A 408 YILNHILRSESNEISSKEIAKCSEFKPY-YLTKALQKLKDLKLLSKKRSL------------------QDERTVIVYVT- 467 (487)
T ss_dssp HHHHHHHTCSCSEEEHHHHHHSSCCCHH-HHHHHHHHHHTTTTSCCEECC------------------SSSSCCEEECC-
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEeecCCC------------------CCCCeEEEEEC-
Confidence 455566666 77899999999888854 567899999999999764211 13455689997
Q ss_pred chhhchHHHHHHHHHhccc
Q 012112 452 PEGFLLSNELISHAFGVID 470 (471)
Q Consensus 452 ~~G~~~~n~i~~~~~~~~~ 470 (471)
++|+.+...+...+-..++
T Consensus 468 ~~g~~~~~~~~~~~~~~~~ 486 (487)
T 1hsj_A 468 DTQKANIQKLISELEEYIK 486 (487)
T ss_dssp SSHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999888776554
No 86
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=83.21 E-value=5.2 Score=41.97 Aligned_cols=119 Identities=14% Similarity=0.130 Sum_probs=79.7
Q ss_pred eeEEEEcCCCC-----CCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec----------CCCCCHHHHHHHHHCCCCEEEE
Q 012112 115 LETVFFGGGTP-----SLVPPRFVSSILDTLTDKFGLSLDAEISMEMD----------PGTFDARKMEELMDLGVNRVSL 179 (471)
Q Consensus 115 v~~i~fGGGTp-----s~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~----------P~~l~~e~l~~l~~~Gvnrvsi 179 (471)
++.|=.|+|.- -+++++.. +.++.+++.. ++..+.+-++ |+.+.+..++...++|++.|.+
T Consensus 61 v~~IE~G~patF~~~~rfl~~d~~-e~lr~l~~~~---~~~~l~~L~R~~N~~G~~~ypddv~~~~ve~a~~aGvd~vrI 136 (539)
T 1rqb_A 61 YWSVECWGGATYDSCIRFLNEDPW-ERLRTFRKLM---PNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRV 136 (539)
T ss_dssp CSEEEEEETTHHHHHHHTSCCCHH-HHHHHHHHHC---TTSCEEEEECGGGTTSSSCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEeCcccccccchhccCCCHH-HHHHHHHHhC---CCCEEEEEeccccccCcccCcccccHHHHHHHHhCCCCEEEE
Confidence 66777765421 01233332 3355555543 3456666653 2334577889999999998888
Q ss_pred ccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCee--EeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 180 GVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENW--SLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 180 GvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v--~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
-. +.++- +.+.++++.+++.|.. + .++...|- .-+++.+.+.++.+.+++++.|++-.
T Consensus 137 f~-s~sd~-----------~ni~~~i~~ak~~G~~-v~~~i~~~~~~-~~~~e~~~~~a~~l~~~Gad~I~L~D 196 (539)
T 1rqb_A 137 FD-AMNDP-----------RNMAHAMAAVKKAGKH-AQGTICYTISP-VHTVEGYVKLAGQLLDMGADSIALKD 196 (539)
T ss_dssp CC-TTCCT-----------HHHHHHHHHHHHTTCE-EEEEEECCCST-TCCHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred EE-ehhHH-----------HHHHHHHHHHHHCCCe-EEEEEEeeeCC-CCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 53 33332 5678999999999986 6 45556675 44899999999999999998776654
No 87
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=82.97 E-value=1.2 Score=38.55 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=48.6
Q ss_pred HHHhccc--cCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCc
Q 012112 375 LMLSFRT--ARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDP 452 (471)
Q Consensus 375 ~~~~Lr~--~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~ 452 (471)
++.-|.. ..++...++.+..|.+-. .+...++.|++.|||....+. .+.|.-+|.|| +
T Consensus 51 vL~~l~~~~~~~~t~~eLa~~l~~~~~-tvs~~l~~Le~~Glv~r~~~~------------------~DrR~~~l~LT-~ 110 (168)
T 3u2r_A 51 TLRLLRSVHPEGMATLQIADRLISRAP-DITRLIDRLDDRGLVLRTRKP------------------ENRRVVEVALT-D 110 (168)
T ss_dssp HHHHHHHHTTSCEEHHHHHHHC---CT-HHHHHHHHHHHTTSEEEEEET------------------TEEEEEEEEEC-H
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCCChh-hHHHHHHHHHHCCCEeecCCC------------------CCCCeeEeEEC-H
Confidence 3444444 358999999999988754 467889999999999865321 12344478997 9
Q ss_pred hhhchHHHHHHHH
Q 012112 453 EGFLLSNELISHA 465 (471)
Q Consensus 453 ~G~~~~n~i~~~~ 465 (471)
+|..+.+.+...+
T Consensus 111 ~G~~~~~~~~~~~ 123 (168)
T 3u2r_A 111 AGLKLLKDLEEPV 123 (168)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998775543
No 88
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=82.95 E-value=6.8 Score=36.17 Aligned_cols=77 Identities=6% Similarity=0.028 Sum_probs=57.8
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhC
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGA 242 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l 242 (471)
++.++.++++|++.|.+....+ .-..+.+++.+..+.++++|+.-+++..-+ .++.+.+++.++.+.++
T Consensus 33 ~~~l~~~~~~G~~~vEl~~~~~--------~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~---~~~~~~~~~~i~~A~~l 101 (257)
T 3lmz_A 33 DTTLKTLERLDIHYLCIKDFHL--------PLNSTDEQIRAFHDKCAAHKVTGYAVGPIY---MKSEEEIDRAFDYAKRV 101 (257)
T ss_dssp HHHHHHHHHTTCCEEEECTTTS--------CTTCCHHHHHHHHHHHHHTTCEEEEEEEEE---ECSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEecccC--------CCCCCHHHHHHHHHHHHHcCCeEEEEeccc---cCCHHHHHHHHHHHHHh
Confidence 6889999999999998886532 123467777888888899998733333222 17899999999999999
Q ss_pred CCCcEEEE
Q 012112 243 QPKHVSVY 250 (471)
Q Consensus 243 ~p~his~y 250 (471)
+.+.|.+.
T Consensus 102 Ga~~v~~~ 109 (257)
T 3lmz_A 102 GVKLIVGV 109 (257)
T ss_dssp TCSEEEEE
T ss_pred CCCEEEec
Confidence 99988763
No 89
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=82.65 E-value=2.1 Score=36.54 Aligned_cols=59 Identities=14% Similarity=0.216 Sum_probs=39.4
Q ss_pred CCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHHHH
Q 012112 384 GVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNELIS 463 (471)
Q Consensus 384 gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i~~ 463 (471)
++...++.+..|.+-. .+...++.|++.|||...+. .+.|.-.|.|| ++|..+...+..
T Consensus 52 ~~t~~eLa~~l~~~~~-tvsr~v~~Le~~glVr~~~~-------------------~DrR~~~v~LT-~~G~~~~~~~~~ 110 (148)
T 4fx0_A 52 DLTMSELAARIGVERT-TLTRNLEVMRRDGLVRVMAG-------------------ADARCKRIELT-AKGRAALQKAVP 110 (148)
T ss_dssp --CHHHHHHHHTCCHH-HHHHHHHHHHHTTSBC------------------------------CCBC-HHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChh-hHHHHHHHHHHCCCEEeeCC-------------------CCCCeeEEEEC-HHHHHHHHHHHH
Confidence 4889999999999864 46788999999999854321 13455679997 999998877643
No 90
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=82.53 E-value=5 Score=40.03 Aligned_cols=121 Identities=8% Similarity=0.030 Sum_probs=77.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCC-HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCC--CHHH
Q 012112 124 TPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFD-ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAH--GLKE 200 (471)
Q Consensus 124 Tps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~-~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~--t~~~ 200 (471)
.|. .++...+.+.. +.+. ..+..++.-+++..-+ +..++.++.+|+.+|.+-+=+-+-...+.+++.. ..+.
T Consensus 55 ~p~-~~~~d~e~v~~-i~~~---~~~~~i~~l~r~~~~di~~a~~al~~ag~~~v~if~~~Sd~h~~~~l~~s~~e~l~~ 129 (370)
T 3rmj_A 55 FAA-ASPGDFEAVNA-IAKT---ITKSTVCSLSRAIERDIRQAGEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQVIEA 129 (370)
T ss_dssp EGG-GCHHHHHHHHH-HHTT---CSSSEEEEEEESSHHHHHHHHHHHTTSSSEEEEEEEECSHHHHHHTTCCCHHHHHHH
T ss_pred CCC-CCHHHHHHHHH-HHHh---CCCCeEEEEecCCHHHHHHHHHHHhhCCCCEEEEEecCcHHHHHHHhCCCHHHHHHH
Confidence 354 36666666544 3332 2456777666542111 1223444559999999977666666667777653 4556
Q ss_pred HHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 201 VYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 201 ~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
+.++++.+++.|.. |.++...+. --+++-+.+.++.+.+.+++.|++-.
T Consensus 130 ~~~~v~~a~~~g~~-v~~~~ed~~-r~~~~~~~~~~~~~~~~Ga~~i~l~D 178 (370)
T 3rmj_A 130 AVKAVKIAREYTDD-VEFSCEDAL-RSEIDFLAEICGAVIEAGATTINIPD 178 (370)
T ss_dssp HHHHHHHHTTTCSC-EEEEEETGG-GSCHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHcCCE-EEEecCCCC-ccCHHHHHHHHHHHHHcCCCEEEecC
Confidence 66778888999886 666665543 45678888899999999998776543
No 91
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=82.38 E-value=5.2 Score=34.02 Aligned_cols=68 Identities=19% Similarity=0.128 Sum_probs=50.2
Q ss_pred hHHHHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceee
Q 012112 369 DLAMDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFR 448 (471)
Q Consensus 369 ~~~~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 448 (471)
+...+.+...+....++...++.+.+|.+-. .+...++.|++.||+....+. .++
T Consensus 39 ~~~~~~i~~~l~~~~~~~~~~la~~l~vs~~-tvs~~l~~Le~~Glv~r~~~~------------------------~~~ 93 (155)
T 2h09_A 39 DDYVELISDLIREVGEARQVDMAARLGVSQP-TVAKMLKRLATMGLIEMIPWR------------------------GVF 93 (155)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHTSCHH-HHHHHHHHHHHTTCEEEETTT------------------------EEE
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHhCcCHH-HHHHHHHHHHHCCCEEEecCC------------------------ceE
Confidence 3444555555555577999999999999854 477899999999999865422 478
Q ss_pred ecCchhhchHHHHH
Q 012112 449 LSDPEGFLLSNELI 462 (471)
Q Consensus 449 lt~~~G~~~~n~i~ 462 (471)
|| ++|..+...+.
T Consensus 94 lT-~~g~~~~~~~~ 106 (155)
T 2h09_A 94 LT-AEGEKLAQESR 106 (155)
T ss_dssp EC-HHHHHHHHHHH
T ss_pred EC-hhHHHHHHHHH
Confidence 86 89988776654
No 92
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=82.36 E-value=23 Score=33.75 Aligned_cols=121 Identities=17% Similarity=0.136 Sum_probs=69.0
Q ss_pred eeEEEEcC-----CCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEE-EEccCCCCHHH
Q 012112 115 LETVFFGG-----GTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRV-SLGVQAFQDEL 188 (471)
Q Consensus 115 v~~i~fGG-----GTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gvnrv-siGvQS~~d~~ 188 (471)
.+-|-+|| |.+.+-..+++.+++..++..-.. +..+++. +...+.++.--++|..-| ++.-...++++
T Consensus 43 AdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~--~~piSID----T~~~~va~aAl~aGa~iINdvsg~~~d~~m 116 (280)
T 1eye_A 43 AGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQ--GITVSID----TMRADVARAALQNGAQMVNDVSGGRADPAM 116 (280)
T ss_dssp CSEEEEECC--------------HHHHHHHHHHHHHT--TCCEEEE----CSCHHHHHHHHHTTCCEEEETTTTSSCTTH
T ss_pred CCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcC--CCEEEEe----CCCHHHHHHHHHcCCCEEEECCCCCCCHHH
Confidence 46677887 322333456777776666554211 3456654 567777777777786555 33333346666
Q ss_pred HHHc----------C-CC--CC---------------HHHHHHHHHHHHHcCCC--eeEeeeecCCCCCCHHHHHHHHHH
Q 012112 189 LKSC----------G-RA--HG---------------LKEVYEAIEIVKLCGVE--NWSLDLISSLPHQTPQMWEESLRR 238 (471)
Q Consensus 189 L~~l----------~-R~--~t---------------~~~~~~ai~~~~~~G~~--~v~~DlI~GlPgqT~e~~~~~l~~ 238 (471)
++.+ . ++ .+ .+...+.++.+.++|++ +|-+|--+|+ +.|.++=.+.|+.
T Consensus 117 ~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~~~Gi~~~~IilDPg~Gf-~k~~~~n~~ll~~ 195 (280)
T 1eye_A 117 GPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGLGF-AKTAQHNWAILHA 195 (280)
T ss_dssp HHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTS-SCCHHHHHHHHHT
T ss_pred HHHHHHhCCeEEEEcCCCCCcchhhcCcchhHHHHHHHHHHHHHHHHHHHcCCChhhEEEECCCCc-ccCHHHHHHHHHH
Confidence 6541 1 11 11 45566788888999997 7899999997 5576665555555
Q ss_pred HHhC
Q 012112 239 TVGA 242 (471)
Q Consensus 239 ~~~l 242 (471)
+.++
T Consensus 196 l~~~ 199 (280)
T 1eye_A 196 LPEL 199 (280)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5443
No 93
>1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3
Probab=82.26 E-value=7.5 Score=39.18 Aligned_cols=122 Identities=13% Similarity=0.019 Sum_probs=76.5
Q ss_pred CCCHHHHHHHHHCCCCEEEEcc--CCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCC----------
Q 012112 160 TFDARKMEELMDLGVNRVSLGV--QAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQ---------- 227 (471)
Q Consensus 160 ~l~~e~l~~l~~~GvnrvsiGv--QS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgq---------- 227 (471)
.++++.++.|+++|+|-|-|.| ..+.+.--.-.......+.+.++|+.++++|+. |-+|+-- .||-
T Consensus 73 ~~te~d~~~i~~~G~N~VRipi~~~~~~~~~~~py~~~~~l~~ld~vv~~a~~~Gi~-VilDlH~-~pG~qng~~~sG~~ 150 (408)
T 1h4p_A 73 FYQEQDFANIASQGFNLVRIPIGYWAFQILDDDPYVSGLQESYLDQAIGWARNNSLK-VWVDLHG-AAGSQNGFDNSGLR 150 (408)
T ss_dssp HSCHHHHHHHHHTTCCEEEEEEEGGGTCCCTTCCCCCSSHHHHHHHHHHHHHHTTCE-EEEEEEE-CTTCSSCCGGGSST
T ss_pred cCCHHHHHHHHHCCCCEEEccCCHHHcccCCCCCCccccHHHHHHHHHHHHHHCCCE-EEEECCC-CCCccCCccCCCCC
Confidence 3689999999999999555544 444321000000012467788999999999997 8888774 3321
Q ss_pred ---------CHHHHHHHHHHHHh-CC-C---CcEEEEeccccCCChhhhcccCCCCCCCCHHHHH-HHHHHHHHHHHHC-
Q 012112 228 ---------TPQMWEESLRRTVG-AQ-P---KHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSA-NFYRMASSMLSSA- 291 (471)
Q Consensus 228 ---------T~e~~~~~l~~~~~-l~-p---~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~-~~~~~~~~~L~~~- 291 (471)
+.+.+.+.++.+.+ ++ - +.|-.|.+.=||..+- .+.+... +.+..+.+.+++.
T Consensus 151 ~~~~w~~~~~~~~~~~~w~~ia~ry~~~~y~~~Vi~~el~NEP~~~~-----------~~~~~~~~~~~~~~~~~IR~~~ 219 (408)
T 1h4p_A 151 DSYKFLEDSNLAVTINVLNYILKKYSAEEYLDIVIGIELINEPLGPV-----------LDMDKMKNDYLAPAYEYLRNNI 219 (408)
T ss_dssp TCCCTTSHHHHHHHHHHHHHHHHHTTSHHHHTTEEEEESCSCCCGGG-----------SCHHHHHHHTHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHcccCCCCeEEEEEeccCCCCCC-----------CCHHHHHHHHHHHHHHHHHhhc
Confidence 23444444554443 33 2 5788899988886431 2345555 7788888888887
Q ss_pred CCc
Q 012112 292 GYR 294 (471)
Q Consensus 292 Gy~ 294 (471)
|=.
T Consensus 220 ~~~ 222 (408)
T 1h4p_A 220 KSD 222 (408)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 94
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=81.96 E-value=1.1 Score=38.20 Aligned_cols=71 Identities=13% Similarity=0.123 Sum_probs=48.3
Q ss_pred HHHhc-cccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 375 LMLSF-RTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 375 ~~~~L-r~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
++.-| ....++...++.+..|.+.. .+...++.|++.|||....+. .+.|.-++.|| ++
T Consensus 52 iL~~L~~~~~~~~~~ela~~l~i~~~-tvs~~l~~Le~~Gli~r~~~~------------------~d~R~~~~~lT-~~ 111 (160)
T 3boq_A 52 AMAQLARNPDGLSMGKLSGALKVTNG-NVSGLVNRLIKDGMVVKAMSA------------------DDRRSFSAKLT-DA 111 (160)
T ss_dssp HHHHHHHCTTCEEHHHHHHHCSSCCS-CHHHHHHHHHHHTSEEEC--------------------------CEEEEC-HH
T ss_pred HHHHHHHcCCCCCHHHHHHHHCCChh-hHHHHHHHHHHCCCEEeecCC------------------CCCCeEEEEEC-hh
Confidence 44445 34568999999999988743 356789999999999864211 12344578997 99
Q ss_pred hhchHHHHHHHH
Q 012112 454 GFLLSNELISHA 465 (471)
Q Consensus 454 G~~~~n~i~~~~ 465 (471)
|..+.+.+...+
T Consensus 112 G~~~~~~~~~~~ 123 (160)
T 3boq_A 112 GLTTFKQASEAH 123 (160)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988764443
No 95
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=81.72 E-value=1.4 Score=36.84 Aligned_cols=70 Identities=11% Similarity=0.101 Sum_probs=51.1
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
.++..|....++...++.+.+|.+.. .+...++.|++.||+....+. .+.|.-++.|| ++
T Consensus 41 ~iL~~l~~~~~~~~~ela~~l~~~~~-tvs~~l~~L~~~gli~r~~~~------------------~d~R~~~~~lT-~~ 100 (142)
T 2bv6_A 41 LVLTILWDESPVNVKKVVTELALDTG-TVSPLLKRMEQVDLIKRERSE------------------VDQREVFIHLT-DK 100 (142)
T ss_dssp HHHHHHHHSSEEEHHHHHHHTTCCTT-THHHHHHHHHHTTSEEEEECS------------------SSTTCEEEEEC-HH
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCChh-hHHHHHHHHHHCCCEEeecCC------------------CCcceEEEEEC-hH
Confidence 34455555667999999999998754 466789999999999865321 12344478997 99
Q ss_pred hhchHHHHHH
Q 012112 454 GFLLSNELIS 463 (471)
Q Consensus 454 G~~~~n~i~~ 463 (471)
|..+.+.+..
T Consensus 101 G~~~~~~~~~ 110 (142)
T 2bv6_A 101 SETIRPELSN 110 (142)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9998887643
No 96
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=81.55 E-value=25 Score=33.16 Aligned_cols=110 Identities=12% Similarity=0.157 Sum_probs=72.3
Q ss_pred CHHHHHHHHHCCCCEEEEccCC---CCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCC-CC---HHHHHH
Q 012112 162 DARKMEELMDLGVNRVSLGVQA---FQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPH-QT---PQMWEE 234 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS---~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg-qT---~e~~~~ 234 (471)
+++.++.+++.|+|-|-+.+.. ++ ....+.+.++++.+++.|+. |-+|+- +.|| +. .+.+.+
T Consensus 33 ~~~~~~~i~~~G~N~VRi~~~~~~~~~---------~~~~~~ld~~v~~a~~~Gi~-Vild~H-~~~~~~~~~~~~~~~~ 101 (294)
T 2whl_A 33 ASTAIPAIAEQGANTIRIVLSDGGQWE---------KDDIDTIREVIELAEQNKMV-AVVEVH-DATGRDSRSDLNRAVD 101 (294)
T ss_dssp HHHHHHHHHHTTCSEEEEEECCSSSSC---------CCCHHHHHHHHHHHHTTTCE-EEEEEC-TTTTCCCHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCEEEEEecCCCccC---------ccHHHHHHHHHHHHHHCCCE-EEEEec-cCCCCCcchhHHHHHH
Confidence 5778999999999977776641 22 13577889999999999997 778864 4444 22 233333
Q ss_pred HHHHHH-hC--CCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q 012112 235 SLRRTV-GA--QPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 235 ~l~~~~-~l--~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
-.+.+. ++ .+++| +|.+.-||.... +.....+.|..+.+.+++.|-.+
T Consensus 102 ~w~~ia~~y~~~~~~v-~~el~NEP~~~~------------~~~~~~~~~~~~~~~IR~~d~~~ 152 (294)
T 2whl_A 102 YWIEMKDALIGKEDTV-IINIANEWYGSW------------DGSAWADGYIDVIPKLRDAGLTH 152 (294)
T ss_dssp HHHHTHHHHTTCTTTE-EEECCTTCCCSS------------CHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHcCCCCeE-EEEecCCCCCCC------------ChHHHHHHHHHHHHHHHhcCCCc
Confidence 333332 23 24677 689888885421 22344566788888888888765
No 97
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=81.43 E-value=5.6 Score=33.51 Aligned_cols=65 Identities=11% Similarity=-0.006 Sum_probs=46.6
Q ss_pred HHhccccCCCCHhhHHHHh-CCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchh
Q 012112 376 MLSFRTARGVDLKSFGETF-GCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEG 454 (471)
Q Consensus 376 ~~~Lr~~~gi~~~~~~~~f-g~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G 454 (471)
+..|. ..+....++++.. |++-. .+...|+.|++.|||....... .-|.-.++|| ++|
T Consensus 32 L~~L~-~g~~rf~eL~~~l~gIs~~-~Ls~~L~~Le~~GLV~R~~~~~------------------d~r~v~y~LT-~~G 90 (131)
T 4a5n_A 32 FYHMI-DGKKRFNEFRRICPSITQR-MLTLQLRELEADGIVHREVYHQ------------------VPPKVEYSLT-EFG 90 (131)
T ss_dssp HHHHT-TSCBCHHHHHHHCTTSCHH-HHHHHHHHHHHTTSEEEEEECS------------------SSCEEEEEEC-TTG
T ss_pred HHHHh-cCCcCHHHHHHHhcccCHH-HHHHHHHHHHHCCCEEEEecCC------------------CCCeEEEEEC-HhH
Confidence 34444 4568899999999 88753 5778999999999998653110 1223368997 999
Q ss_pred hchHHHH
Q 012112 455 FLLSNEL 461 (471)
Q Consensus 455 ~~~~n~i 461 (471)
..+...+
T Consensus 91 ~~l~~~l 97 (131)
T 4a5n_A 91 RTLEPIV 97 (131)
T ss_dssp GGGHHHH
T ss_pred HHHHHHH
Confidence 9997654
No 98
>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea jecorina}
Probab=81.38 E-value=3.5 Score=40.59 Aligned_cols=115 Identities=11% Similarity=0.085 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHCCCC--EEEEccCCCCHHHHHHcCCCC---CHHHHHHHHHHHHHcCCCeeEeeeecCCC----------
Q 012112 161 FDARKMEELMDLGVN--RVSLGVQAFQDELLKSCGRAH---GLKEVYEAIEIVKLCGVENWSLDLISSLP---------- 225 (471)
Q Consensus 161 l~~e~l~~l~~~Gvn--rvsiGvQS~~d~~L~~l~R~~---t~~~~~~ai~~~~~~G~~~v~~DlI~GlP---------- 225 (471)
.+.++++.+++.|+| ||.|+.+.+.+. ..+... ..+.+.++|+.+++.|+. |-+|+- ..|
T Consensus 44 ~t~~m~~~i~~~G~N~vRipi~w~~~~~~---~~~g~~~~~~l~~ld~vV~~a~~~Gi~-vIlDlH-~~~~~~g~~~~~~ 118 (340)
T 3qr3_A 44 GIGQMQHFVNEDGMTIFRLPVGWQYLVNN---NLGGNLDSTSISKYDQLVQGCLSLGAY-CIVDIH-NYARWNGGIIGQG 118 (340)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECHHHHTTT---CTTCCCCHHHHHHHHHHHHHHHHTTCE-EEEEEC-STTEETTEETTTT
T ss_pred cHHHHHHHHHHCCCCEEEEEeeHHHhCCC---CCCCccCHHHHHHHHHHHHHHHHCCCE-EEEEec-CCcccCCcccCCC
Confidence 367888899999999 555554322110 011111 256688899999999997 778864 233
Q ss_pred CCCHHHHHHHHHHHHhC--CCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 226 HQTPQMWEESLRRTVGA--QPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 226 gqT~e~~~~~l~~~~~l--~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
..+.+.+.+-.+.+.+. +-++| +|.+.=||... +.+...++++.+.+.+++.|-.
T Consensus 119 ~~~~~~~~~~w~~iA~ryk~~~~V-i~el~NEP~~~-------------~~~~w~~~~~~~i~aIR~~~~~ 175 (340)
T 3qr3_A 119 GPTNAQFTSLWSQLASKYASQSRV-WFGIMNEPHDV-------------NINTWAATVQEVVTAIRNAGAT 175 (340)
T ss_dssp SSCHHHHHHHHHHHHHHHTTCTTE-EEECCSCCCSS-------------CHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcE-EEEecCCCCCC-------------CHHHHHHHHHHHHHHHHhhCCC
Confidence 24677777666665542 23477 58888887421 3455667888999999998876
No 99
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=81.24 E-value=4.1 Score=32.61 Aligned_cols=67 Identities=13% Similarity=0.048 Sum_probs=47.3
Q ss_pred HHHhccccCCCCHhhHHHHh-CCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 375 LMLSFRTARGVDLKSFGETF-GCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~f-g~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
++..|. ..++...++.+.. |.+-. .+...++.|++.|+|....+. .+.|.-++.|| ++
T Consensus 30 IL~~L~-~~~~~~~eL~~~l~gis~~-~ls~~L~~Le~~GlV~r~~~~------------------~d~r~~~y~LT-~~ 88 (107)
T 2fsw_A 30 IIFQIN-RRIIRYGELKRAIPGISEK-MLIDELKFLCGKGLIKKKQYP------------------EVPPRVEYSLT-PL 88 (107)
T ss_dssp HHHHHT-TSCEEHHHHHHHSTTCCHH-HHHHHHHHHHHTTSEEEEEEC------------------SSSCEEEEEEC-HH
T ss_pred HHHHHH-hCCcCHHHHHHHcccCCHH-HHHHHHHHHHHCCCEEEeecC------------------CCCCeeEEEEC-cc
Confidence 344444 4568899999999 48753 577899999999999864321 12344468997 99
Q ss_pred hhchHHHHH
Q 012112 454 GFLLSNELI 462 (471)
Q Consensus 454 G~~~~n~i~ 462 (471)
|..+...+.
T Consensus 89 G~~l~~~l~ 97 (107)
T 2fsw_A 89 GEKVLPIID 97 (107)
T ss_dssp HHTTHHHHH
T ss_pred HHHHHHHHH
Confidence 998876543
No 100
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=80.95 E-value=24 Score=33.97 Aligned_cols=119 Identities=18% Similarity=0.331 Sum_probs=75.0
Q ss_pred eeEEEEcCCC--C---CCCCHHHHHHHH---HHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEE-EEccCCCC
Q 012112 115 LETVFFGGGT--P---SLVPPRFVSSIL---DTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRV-SLGVQAFQ 185 (471)
Q Consensus 115 v~~i~fGGGT--p---s~l~~~~l~~ll---~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gvnrv-siGvQS~~ 185 (471)
.+-|-+||-. | .+-..+.+++++ +.+++.++ ..+++. +.+.+.++.-.++|.+-| ++.-...+
T Consensus 77 AdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~~----vpiSID----T~~~~V~~aAl~aGa~iINdvsg~~~d 148 (297)
T 1tx2_A 77 AHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEVK----LPISID----TYKAEVAKQAIEAGAHIINDIWGAKAE 148 (297)
T ss_dssp CSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHSC----SCEEEE----CSCHHHHHHHHHHTCCEEEETTTTSSC
T ss_pred CCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCC----ceEEEe----CCCHHHHHHHHHcCCCEEEECCCCCCC
Confidence 5677788732 3 232356777777 55555443 346655 557777777777787655 44334456
Q ss_pred HHHHHHc-----------CCCC-C--------HHHHHHHHHHHHHcCCC--eeEeeeecCCCCCCHHHHHHHHHHHHhC
Q 012112 186 DELLKSC-----------GRAH-G--------LKEVYEAIEIVKLCGVE--NWSLDLISSLPHQTPQMWEESLRRTVGA 242 (471)
Q Consensus 186 d~~L~~l-----------~R~~-t--------~~~~~~ai~~~~~~G~~--~v~~DlI~GlPgqT~e~~~~~l~~~~~l 242 (471)
+++++.+ .++. . .+...+.++.+.++|++ +|-+|--+|+ +.|.+.-.+.|+.+.++
T Consensus 149 ~~m~~~aa~~g~~vVlmh~~G~p~y~d~v~ev~~~l~~~i~~a~~~GI~~~~IilDPg~Gf-gk~~~~n~~ll~~l~~l 226 (297)
T 1tx2_A 149 PKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGF-AKTPEQNLEAMRNLEQL 226 (297)
T ss_dssp THHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTS-SCCHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHhCCcEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHHcCCChhcEEEeCCCCc-CCCHHHHHHHHHHHHHH
Confidence 7766542 1211 1 35566778888999998 7999998888 88887655666655443
No 101
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=80.71 E-value=2.6 Score=39.69 Aligned_cols=81 Identities=12% Similarity=0.063 Sum_probs=58.3
Q ss_pred CCHhhHHHHHHHHhccccC--CCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhccc
Q 012112 365 IDAKDLAMDVLMLSFRTAR--GVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGN 442 (471)
Q Consensus 365 l~~~~~~~e~~~~~Lr~~~--gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~ 442 (471)
++..+ ..++..|.... ++...+++++.+.+-. .+...+++|++.|||....+. .+.
T Consensus 156 Lt~~q---~~vL~~L~~~~~~~~t~~eLa~~l~i~~~-tvt~~v~rLe~~GlV~R~~~~------------------~Dr 213 (250)
T 1p4x_A 156 LSFVE---FTILAIITSQNKNIVLLKDLIETIHHKYP-QTVRALNNLKKQGYLIKERST------------------EDE 213 (250)
T ss_dssp SCHHH---HHHHHHHHTTTTCCEEHHHHHHHSSSCHH-HHHHHHHHHHHHTSSEEEECS------------------SST
T ss_pred CCHHH---HHHHHHHHhCCCCCcCHHHHHHHHCCChh-hHHHHHHHHHHCCCEEeeCCC------------------CCC
Confidence 55533 33445555444 4899999999999864 467889999999999875321 234
Q ss_pred ccceeeecCchhhchHHHHHHHHHhc
Q 012112 443 RLAYFRLSDPEGFLLSNELISHAFGV 468 (471)
Q Consensus 443 ~~~~~~lt~~~G~~~~n~i~~~~~~~ 468 (471)
|.-.|.|| ++|..+.+.+...+-..
T Consensus 214 R~~~i~LT-~~G~~~~~~~~~~~~~~ 238 (250)
T 1p4x_A 214 RKILIHMD-DAQQDHAEQLLAQVNQL 238 (250)
T ss_dssp TCEEEECC-HHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEC-HHHHHHHHHHHHHHHHH
Confidence 55679997 99999999887765543
No 102
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=80.12 E-value=1.4 Score=37.32 Aligned_cols=67 Identities=19% Similarity=0.177 Sum_probs=47.2
Q ss_pred HHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchh
Q 012112 375 LMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEG 454 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G 454 (471)
++..|....++...++.+.+|.+-. .+...++.|++.|||....+. .+.|.-++.|| ++|
T Consensus 52 iL~~l~~~~~~t~~ela~~l~~s~~-tvs~~l~~Le~~glv~r~~~~------------------~d~R~~~~~lT-~~G 111 (153)
T 2pex_A 52 VMLVLWETDERSVSEIGERLYLDSA-TLTPLLKRLQAAGLVTRTRAA------------------SDERQVIIALT-ETG 111 (153)
T ss_dssp HHHHHHHSCSEEHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEEC-------------------------CEEEEC-HHH
T ss_pred HHHHHHhCCCcCHHHHHHHhCCCcc-cHHHHHHHHHHCCCEeecCCc------------------ccCCeeEeeEC-HHH
Confidence 4445555678999999999998854 467789999999999875321 12344468997 999
Q ss_pred hchHHHH
Q 012112 455 FLLSNEL 461 (471)
Q Consensus 455 ~~~~n~i 461 (471)
..+.+.+
T Consensus 112 ~~~~~~~ 118 (153)
T 2pex_A 112 RALRSKA 118 (153)
T ss_dssp HHGGGGS
T ss_pred HHHHHHH
Confidence 9877654
No 103
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=79.39 E-value=8.1 Score=29.74 Aligned_cols=45 Identities=9% Similarity=0.115 Sum_probs=35.1
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEec
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLD 419 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~ 419 (471)
.++..|....++...++.+.+|.+.. .+...++.|++.|++....
T Consensus 28 ~il~~l~~~~~~s~~ela~~l~is~~-tvs~~l~~L~~~glv~~~~ 72 (99)
T 3cuo_A 28 LILCMLSGSPGTSAGELTRITGLSAS-ATSQHLARMRDEGLIDSQR 72 (99)
T ss_dssp HHHHHHTTCCSEEHHHHHHHHCCCHH-HHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhCCCcCHHHHHHHHCcCHH-HHHHHHHHHHHCCCEEEEe
Confidence 34455555557999999999999864 4677899999999998654
No 104
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=79.31 E-value=3.2 Score=33.74 Aligned_cols=66 Identities=11% Similarity=0.069 Sum_probs=45.4
Q ss_pred HHHhccccCCCCHhhHHHHhCCC--h-HHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecC
Q 012112 375 LMLSFRTARGVDLKSFGETFGCS--L-VHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSD 451 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~fg~~--~-~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~ 451 (471)
++.-|....++...++.+..+.+ + ...+...++.|++.|||....+++ |.-++.||
T Consensus 15 vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~~r--------------------r~~~~~lT- 73 (123)
T 1okr_A 15 VMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNK--------------------IFQYYSLV- 73 (123)
T ss_dssp HHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETT--------------------EEEEEESS-
T ss_pred HHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEecCC--------------------eEEEEEec-
Confidence 33334345788899999888732 1 234677899999999998754222 33367897
Q ss_pred chhhchHHHH
Q 012112 452 PEGFLLSNEL 461 (471)
Q Consensus 452 ~~G~~~~n~i 461 (471)
++|..+...+
T Consensus 74 ~~g~~~~~~~ 83 (123)
T 1okr_A 74 EESDIKYKTS 83 (123)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999887655
No 105
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}
Probab=79.17 E-value=14 Score=36.68 Aligned_cols=121 Identities=12% Similarity=0.127 Sum_probs=75.2
Q ss_pred EEEEecCCC-CCH---HHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC--------------
Q 012112 152 ISMEMDPGT-FDA---RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGV-------------- 213 (471)
Q Consensus 152 itiE~~P~~-l~~---e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~-------------- 213 (471)
+.+.+.|+. ..+ +.|+.++++|++||...+++..++. ....+++.+.++.|++.|+
T Consensus 5 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~IFTSL~~~e~~~------~~~~~~~~~l~~~a~~~g~~vi~DIsp~~l~~L 78 (372)
T 2p0o_A 5 YGISVFLGEEITNDTIIYIKKMKALGFDGIFTSLHIPEDDT------SLYRQRLTDLGAIAKAEKMKIMVDISGEALKRA 78 (372)
T ss_dssp EEEECCTTSCCCHHHHHHHHHHHHTTCCEEEEEECCC-----------CHHHHHHHHHHHHHHHTCEEEEEECHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHCCCCEEEccCCccCCCh------HHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHc
Confidence 344455653 222 5788888888888888888765421 1123344455555555554
Q ss_pred ---------------CeeEeeeecCCCCCCHHHH--------------HHHHHHHHhCCCC---cEEEEeccccCCChhh
Q 012112 214 ---------------ENWSLDLISSLPHQTPQMW--------------EESLRRTVGAQPK---HVSVYDLQVEQGTKFG 261 (471)
Q Consensus 214 ---------------~~v~~DlI~GlPgqT~e~~--------------~~~l~~~~~l~p~---his~y~l~~~pgT~l~ 261 (471)
..+.+| +|+.++....+ .+.++.+.+.+++ -+.++.+.|.|.|-+.
T Consensus 79 g~s~~dl~~~~~lGi~glRLD--~Gf~~~eia~ls~nlkIeLNASti~~~~l~~l~~~~~n~~~l~a~HNFYPr~~TGLs 156 (372)
T 2p0o_A 79 GFSFDELEPLIELGVTGLRMD--YGITIEQMAHASHKIDIGLNASTITLEEVAELKAHQADFSRLEAWHNYYPRPETGIG 156 (372)
T ss_dssp TCBTTBCHHHHHHTCCEEEEC--SSCCHHHHHHHHTTSEEEEETTTCCHHHHHHHHHTTCCGGGEEEECCCCCSTTCSBC
T ss_pred CCCHHHHHHHHHcCCCEEEEc--CCCCHHHHHHHhcCCEEEEECccCCHHHHHHHHHcCCChHHeEEeeccCCCCCCCCC
Confidence 433444 35555555444 3457777887776 4588999999999765
Q ss_pred hcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCcee
Q 012112 262 ILYTPGEFPLPTETQSANFYRMASSMLSSAGYRHY 296 (471)
Q Consensus 262 ~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~y 296 (471)
. +.|...-+++++.|..-.
T Consensus 157 ~----------------~~f~~~n~~~k~~Gi~t~ 175 (372)
T 2p0o_A 157 T----------------TFFNEKNRWLKELGLQVF 175 (372)
T ss_dssp H----------------HHHHHHHHHHHHTTCEEE
T ss_pred H----------------HHHHHHHHHHHHCCCcEE
Confidence 3 467888889999997643
No 106
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=78.54 E-value=5.4 Score=32.26 Aligned_cols=68 Identities=18% Similarity=0.273 Sum_probs=47.3
Q ss_pred HHHhccccCCCC--HhhHHHHh-CCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecC
Q 012112 375 LMLSFRTARGVD--LKSFGETF-GCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSD 451 (471)
Q Consensus 375 ~~~~Lr~~~gi~--~~~~~~~f-g~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~ 451 (471)
++..|. ..... ..++++.. |.+-. .+...|+.|++.|+|..... |.-+++||
T Consensus 32 IL~~L~-~g~~~~~~~eL~~~l~gis~~-~ls~~L~~Le~~GlV~r~~~----------------------r~~~y~LT- 86 (111)
T 3df8_A 32 IISVLG-NGSTRQNFNDIRSSIPGISST-ILSRRIKDLIDSGLVERRSG----------------------QITTYALT- 86 (111)
T ss_dssp HHHHHT-SSSSCBCHHHHHHTSTTCCHH-HHHHHHHHHHHTTSEEEEES----------------------SSEEEEEC-
T ss_pred HHHHHh-cCCCCCCHHHHHHHccCCCHH-HHHHHHHHHHHCCCEEEeec----------------------CcEEEEEC-
Confidence 334444 34455 89999999 88854 57789999999999986432 22368997
Q ss_pred chhhchHHHHHHHHHhc
Q 012112 452 PEGFLLSNELISHAFGV 468 (471)
Q Consensus 452 ~~G~~~~n~i~~~~~~~ 468 (471)
++|..+...+ ..+..|
T Consensus 87 ~~G~~l~~~l-~~l~~w 102 (111)
T 3df8_A 87 EKGMNVRNSL-MPLLQY 102 (111)
T ss_dssp HHHHHHHHHH-HHHHHH
T ss_pred ccHHHHHHHH-HHHHHH
Confidence 9999987544 444444
No 107
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=78.48 E-value=9.3 Score=35.26 Aligned_cols=110 Identities=11% Similarity=0.104 Sum_probs=61.1
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCC--CC-CCHHHHHHHHHHH
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSL--PH-QTPQMWEESLRRT 239 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl--Pg-qT~e~~~~~l~~~ 239 (471)
++.++.++++|++.|.+..+..... ..+..++.+..+.++++|+.-+++...+.+ |. +..+.+++.++.+
T Consensus 22 ~~~l~~~~~~G~~~vEl~~~~~~~~-------~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 94 (272)
T 2q02_A 22 EAFFRLVKRLEFNKVELRNDMPSGS-------VTDDLNYNQVRNLAEKYGLEIVTINAVYPFNQLTEEVVKKTEGLLRDA 94 (272)
T ss_dssp HHHHHHHHHTTCCEEEEETTSTTSS-------TTTTCCHHHHHHHHHHTTCEEEEEEEETTTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEeeccccccc-------cccccCHHHHHHHHHHcCCeEEechhhhccCCcHHHHHHHHHHHHHHH
Confidence 5777888888888888765432100 001123444455667778763355433332 21 1245667777777
Q ss_pred HhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHH-HHHHHHHHHHHHHCCCc
Q 012112 240 VGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQS-ANFYRMASSMLSSAGYR 294 (471)
Q Consensus 240 ~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~-~~~~~~~~~~L~~~Gy~ 294 (471)
.+++++.|.+. +|.. +. ...+.. .+.+..+.+..++.|..
T Consensus 95 ~~lG~~~v~~~-----~g~~-------~~---~~~~~~~~~~l~~l~~~a~~~gv~ 135 (272)
T 2q02_A 95 QGVGARALVLC-----PLND-------GT---IVPPEVTVEAIKRLSDLFARYDIQ 135 (272)
T ss_dssp HHHTCSEEEEC-----CCCS-------SB---CCCHHHHHHHHHHHHHHHHTTTCE
T ss_pred HHhCCCEEEEc-----cCCC-------ch---hHHHHHHHHHHHHHHHHHHHcCCE
Confidence 88888877663 2221 00 122344 66677777777777754
No 108
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=78.40 E-value=4.3 Score=34.01 Aligned_cols=66 Identities=14% Similarity=0.218 Sum_probs=47.3
Q ss_pred HHHhccccCCCCHhhHHHHh-CCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 375 LMLSFRTARGVDLKSFGETF-GCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~f-g~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
|+..|. ..++...++.+.. |.+-. .+...|+.|++.|||...... .+.|.-+++|| ++
T Consensus 40 IL~~L~-~g~~~~~eLa~~l~gis~~-tls~~L~~Le~~GlV~r~~~~------------------~d~r~~~y~LT-~~ 98 (131)
T 1yyv_A 40 ILVALR-DGTHRFSDLRRXMGGVSEX-MLAQSLQALEQDGFLNRVSYP------------------VVPPHVEYSLT-PL 98 (131)
T ss_dssp HHHHGG-GCCEEHHHHHHHSTTCCHH-HHHHHHHHHHHHTCEEEEEEC------------------SSSCEEEEEEC-HH
T ss_pred HHHHHH-cCCCCHHHHHHHhccCCHH-HHHHHHHHHHHCCcEEEEecC------------------CCCCeEEEEEC-cc
Confidence 445555 5668999999998 78754 577899999999999864311 12333478997 99
Q ss_pred hhchHHHH
Q 012112 454 GFLLSNEL 461 (471)
Q Consensus 454 G~~~~n~i 461 (471)
|..+...+
T Consensus 99 G~~l~~~l 106 (131)
T 1yyv_A 99 GEQVSDXV 106 (131)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99876544
No 109
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=78.15 E-value=7.7 Score=38.81 Aligned_cols=122 Identities=14% Similarity=0.135 Sum_probs=74.2
Q ss_pred EEEEecCCCCC----HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeee------
Q 012112 152 ISMEMDPGTFD----ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLI------ 221 (471)
Q Consensus 152 itiE~~P~~l~----~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI------ 221 (471)
+.+.+.|+.-+ .+.|+.++++|++||...+++..++. ....+++.+.++.|++.|++ |-+|+=
T Consensus 29 LGiSvYp~~~~~~~~~~Yi~~a~~~Gf~~IFTSL~~~e~~~------~~~~~~~~~l~~~a~~~g~~-vi~DVsp~~~~~ 101 (385)
T 1x7f_A 29 LGISLYPEHSTKEKDMAYISAAARHGFSRIFTCLLSVNRPK------EEIVAEFKEIINHAKDNNME-VILDVAPAVFDQ 101 (385)
T ss_dssp EEEEECGGGSCHHHHHHHHHHHHTTTEEEEEEEECCC--------------HHHHHHHHHHHHTTCE-EEEEECTTCC--
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHCCCCEEEccCCccCCCh------HHHHHHHHHHHHHHHHCCCE-EEEECCHHHHHH
Confidence 44455565422 25688888888888888887764421 12234555666666666654 444431
Q ss_pred ----------------------cCCCCCCHHHHH----------------HHHHHHHhCCCC---cEEEEeccccCCChh
Q 012112 222 ----------------------SSLPHQTPQMWE----------------ESLRRTVGAQPK---HVSVYDLQVEQGTKF 260 (471)
Q Consensus 222 ----------------------~GlPgqT~e~~~----------------~~l~~~~~l~p~---his~y~l~~~pgT~l 260 (471)
+|+.++....+- +.++.+.+.+++ -+.++.+.|.|.|-+
T Consensus 102 Lg~s~~dl~~f~~lGi~gLRLD~Gf~~~eia~ls~n~~glkIeLNASt~~~~l~~l~~~~~n~~~l~acHNFYPr~~TGL 181 (385)
T 1x7f_A 102 LGISYSDLSFFAELGADGIRLDVGFDGLTEAKMTNNPYGLKIELNVSNDIAYLENILSHQANKSALIGCHNFYPQKFTGL 181 (385)
T ss_dssp ----CCCTHHHHHHTCSEEEESSCCSSHHHHHHTTCTTCCEEEEETTSCSSHHHHHTTSSCCGGGEEEECCCBCSTTCSB
T ss_pred cCCCHHHHHHHHHcCCCEEEEcCCCCHHHHHHHhcCCCCCEEEEeCcCCHHHHHHHHHcCCChHHeEEeeccCCCCCCCC
Confidence 355555544442 236677777765 458888888888876
Q ss_pred hhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCcee
Q 012112 261 GILYTPGEFPLPTETQSANFYRMASSMLSSAGYRHY 296 (471)
Q Consensus 261 ~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~y 296 (471)
.. +.|...-+++++.|..-.
T Consensus 182 s~----------------~~f~~~n~~~k~~Gi~t~ 201 (385)
T 1x7f_A 182 PY----------------DYFIRCSERFKKHGIRSA 201 (385)
T ss_dssp CH----------------HHHHHHHHHHHHTTCCCE
T ss_pred CH----------------HHHHHHHHHHHHCCCcEE
Confidence 43 468888889999997643
No 110
>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A*
Probab=78.12 E-value=9.5 Score=36.10 Aligned_cols=123 Identities=9% Similarity=0.037 Sum_probs=73.9
Q ss_pred CCCCCHHHHHHHHH-CCCC--EEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHH
Q 012112 158 PGTFDARKMEELMD-LGVN--RVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEE 234 (471)
Q Consensus 158 P~~l~~e~l~~l~~-~Gvn--rvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~ 234 (471)
|..++++.++.|++ .|+| |+.++.+.-...... .+.....+.+.++++.+.+.|+. |-+|+--.-++...+.+.+
T Consensus 36 ~~~~~~~di~~~~~~~G~N~vRi~~~~~~~~~~~~~-~~p~~~~~~ld~~v~~a~~~Gi~-vild~h~~~~~~~~~~~~~ 113 (293)
T 1tvn_A 36 EKFYTAETVAKAKTEFNATLIRAAIGHGTSTGGSLN-FDWEGNMSRLDTVVNAAIAEDMY-VIIDFHSHEAHTDQATAVR 113 (293)
T ss_dssp GGGCSHHHHHHHHHHHCCSEEEEEEECCTTSTTSTT-TCHHHHHHHHHHHHHHHHHTTCE-EEEEEECSCGGGCHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEeccccCCCCCccc-cChHHHHHHHHHHHHHHHHCCCE-EEEEcCCCCccccHHHHHH
Confidence 34468999999994 9999 556655310000000 00001135567889999999997 7788754333445666666
Q ss_pred HHHHHHh-C-CCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q 012112 235 SLRRTVG-A-QPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 235 ~l~~~~~-l-~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
-++.+.+ + +-++|- |.+.=||...-. .+...+.+..+.+.+++.+=.+
T Consensus 114 ~~~~~a~r~~~~p~V~-~el~NEP~~~~~------------~~~~~~~~~~~~~~IR~~d~~~ 163 (293)
T 1tvn_A 114 FFEDVATKYGQYDNVI-YEIYNEPLQISW------------VNDIKPYAETVIDKIRAIDPDN 163 (293)
T ss_dssp HHHHHHHHHTTCTTEE-EECCSCCCSCCT------------TTTHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHhCCCCeEE-EEccCCCCCCch------------HHHHHHHHHHHHHHHHhhCCCC
Confidence 6666543 2 223574 998888864210 0234457788888888877654
No 111
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=78.03 E-value=1 Score=37.85 Aligned_cols=68 Identities=19% Similarity=0.206 Sum_probs=49.7
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
.++..|....++...++++.+|.+.. .+...++.|++.|||....+. .+.|.-++.|| ++
T Consensus 44 ~iL~~l~~~~~~~~~~la~~l~~~~~-tvs~~l~~L~~~glv~r~~~~------------------~d~R~~~~~LT-~~ 103 (147)
T 1z91_A 44 LALLLLWEHETLTVKKMGEQLYLDSG-TLTPMLKRMEQQGLITRKRSE------------------EDERSVLISLT-ED 103 (147)
T ss_dssp HHHHHHHHHSEEEHHHHHHTTTCCHH-HHHHHHHHHHHHTSEECCBCS------------------SCTTSBEEEEC-HH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCcC-cHHHHHHHHHHCCCEEeccCC------------------CCCCeeEEEEC-Hh
Confidence 34455555568999999999998854 467789999999999864321 12344578997 99
Q ss_pred hhchHHHH
Q 012112 454 GFLLSNEL 461 (471)
Q Consensus 454 G~~~~n~i 461 (471)
|..+.+.+
T Consensus 104 G~~~~~~~ 111 (147)
T 1z91_A 104 GALLKEKA 111 (147)
T ss_dssp HHSGGGGT
T ss_pred HHHHHHHH
Confidence 99887664
No 112
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=77.82 E-value=5.2 Score=32.31 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=44.5
Q ss_pred CCCCHhhHHHHh-CCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHH
Q 012112 383 RGVDLKSFGETF-GCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNEL 461 (471)
Q Consensus 383 ~gi~~~~~~~~f-g~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i 461 (471)
.++...++.+.. |.+-. .+...++.|++.|||....+. .+.|.-+++|| ++|..+...+
T Consensus 34 ~~~~~~eLa~~l~~is~~-tvs~~L~~Le~~GlI~r~~~~------------------~d~r~~~~~LT-~~G~~~~~~~ 93 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQR-VLTDRLREMEKDGLVHRESFN------------------ELPPRVEYTLT-PEGYALYDAL 93 (112)
T ss_dssp SCBCHHHHHHHSTTCCHH-HHHHHHHHHHHHTSEEEEEEC------------------CSSCEEEEEEC-HHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHH-HHHHHHHHHHHCCCEEEeecC------------------CCCCeEEEEEC-HhHHHHHHHH
Confidence 578999999999 98854 567899999999999864321 12344468997 9999887654
No 113
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=77.81 E-value=2.3 Score=40.08 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=57.6
Q ss_pred cCCHhhHHHHHHHHhcccc--CCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcc
Q 012112 364 HIDAKDLAMDVLMLSFRTA--RGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIG 441 (471)
Q Consensus 364 ~l~~~~~~~e~~~~~Lr~~--~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~ 441 (471)
.++..+ ..++.-|... .|+...++.++.+.+- ..+...+++|++.|||....+. -+
T Consensus 31 ~lt~~q---~~vL~~L~~~~~~~~~~~el~~~l~~~~-~t~t~~l~rLe~~G~i~R~~~~------------------~D 88 (250)
T 1p4x_A 31 DMTIKE---FILLTYLFHQQENTLPFKKIVSDLCYKQ-SDLVQHIKVLVKHSYISKVRSK------------------ID 88 (250)
T ss_dssp SSCHHH---HHHHHHHHSCSCSEEEHHHHHHHSSSCG-GGTHHHHHHHHHTTSCEEEECS------------------SS
T ss_pred CCCHHH---HHHHHHHHhcCCCCcCHHHHHHHHCCCH-hhHHHHHHHHHHCCCEEecCCC------------------CC
Confidence 366643 3455555543 4799999999998884 3467889999999999865321 24
Q ss_pred cccceeeecCchhhchHHHHHHHHH
Q 012112 442 NRLAYFRLSDPEGFLLSNELISHAF 466 (471)
Q Consensus 442 ~~~~~~~lt~~~G~~~~n~i~~~~~ 466 (471)
.|+-.|.|| ++|..+.+.+...+-
T Consensus 89 rR~~~i~LT-~~G~~~~~~~~~~~~ 112 (250)
T 1p4x_A 89 ERNTYISIS-EEQREKIAERVTLFD 112 (250)
T ss_dssp TTSEEEECC-HHHHHHHHHHHHHHH
T ss_pred CCeEEEEEC-HHHHHHHHHHHHHHH
Confidence 566689997 999998888766543
No 114
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=77.62 E-value=37 Score=33.71 Aligned_cols=123 Identities=16% Similarity=0.143 Sum_probs=78.8
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGR 194 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R 194 (471)
++.|=+|. |.. ++... +.++.+++. .....+..-+++ ..+-++...++|++.|.+-+ +.++-..+.+++
T Consensus 39 v~~IE~g~--p~~-~~~~~-~~~~~i~~~---~~~~~v~~~~r~---~~~di~~a~~~g~~~v~i~~-~~s~~~~~~~~~ 107 (382)
T 2ztj_A 39 IEYIEVTT--PVA-SPQSR-KDAEVLASL---GLKAKVVTHIQC---RLDAAKVAVETGVQGIDLLF-GTSKYLRAPHGR 107 (382)
T ss_dssp CSEEEECC--TTS-CHHHH-HHHHHHHTS---CCSSEEEEEEES---CHHHHHHHHHTTCSEEEEEE-CC--------CC
T ss_pred cCEEEEcC--CcC-CHHHH-HHHHHHHhc---CCCcEEEEEccc---ChhhHHHHHHcCCCEEEEEe-ccCHHHHHHhCC
Confidence 56666653 654 44433 334555443 233566655554 45668888899999988866 555544445554
Q ss_pred CC--CHHHHHHHHHHHHHcC--CCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 195 AH--GLKEVYEAIEIVKLCG--VENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 195 ~~--t~~~~~~ai~~~~~~G--~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
.. ..+.+.++++.+++.| +. +.+++.-+ +.-+++.+.+.++.+.+. ++.|++-.
T Consensus 108 s~~e~l~~~~~~v~~ak~~g~~~~-v~~~~ed~-~~~~~~~~~~~~~~~~~~-a~~i~l~D 165 (382)
T 2ztj_A 108 DIPRIIEEAKEVIAYIREAAPHVE-VRFSAEDT-FRSEEQDLLAVYEAVAPY-VDRVGLAD 165 (382)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSE-EEEEETTT-TTSCHHHHHHHHHHHGGG-CSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEE-EEEEEEeC-CCCCHHHHHHHHHHHHHh-cCEEEecC
Confidence 32 2456788899999999 86 88888755 467788999999999999 88776654
No 115
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=77.48 E-value=15 Score=34.40 Aligned_cols=119 Identities=13% Similarity=0.091 Sum_probs=71.9
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeee------cCCCC-----CCHHH
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLI------SSLPH-----QTPQM 231 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI------~GlPg-----qT~e~ 231 (471)
++.++.++++|++.|.+......+.. . ....+.+++.+..+.++++|+.-.++.+- ++-|. +..+.
T Consensus 33 ~~~l~~~~~~G~~~iEl~~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~d~~~r~~~~~~ 109 (295)
T 3cqj_A 33 LERLQLAKTLGFDFVEMSVDETDERL-S--RLDWSREQRLALVNAIVETGVRVPSMCLSAHRRFPLGSEDDAVRAQGLEI 109 (295)
T ss_dssp HHHHHHHHHTTCSEEEEECCSSHHHH-G--GGGCCHHHHHHHHHHHHHHCCEEEEEEEGGGGTSCTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEecCCccccc-C--cccCCHHHHHHHHHHHHHcCCeEEEEecCcccCCCCCCCCHHHHHHHHHH
Confidence 68899999999999999876543221 1 11235677778888899999973333321 12222 12467
Q ss_pred HHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 232 WEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 232 ~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
+++.++.+.+++++.|.+.... ... +.......+...+.+..+.+..++.|..
T Consensus 110 ~~~~i~~A~~lG~~~v~~~~~~-----~~~-----~~~~~~~~~~~~~~l~~l~~~a~~~Gv~ 162 (295)
T 3cqj_A 110 MRKAIQFAQDVGIRVIQLAGYD-----VYY-----QEANNETRRRFRDGLKESVEMASRAQVT 162 (295)
T ss_dssp HHHHHHHHHHHTCCEEEECCCS-----CSS-----SCCCHHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHcCCCEEEECCCC-----CCc-----CcCHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 8888999999999988764221 100 0000001133455666777777777754
No 116
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=77.06 E-value=4.2 Score=34.80 Aligned_cols=63 Identities=16% Similarity=0.187 Sum_probs=45.6
Q ss_pred ccCCCCHhhHHHHhCCC-------------hHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhccccccee
Q 012112 381 TARGVDLKSFGETFGCS-------------LVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYF 447 (471)
Q Consensus 381 ~~~gi~~~~~~~~fg~~-------------~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (471)
+..++-...+...||.. =.......|+.|++.|+++...+ +.|
T Consensus 67 l~g~vGV~~lrk~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~g~vek~~~--------------------~GR---- 122 (144)
T 3u5c_T 67 MRKQVGVGKLNKLYGGAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEISPK--------------------GGR---- 122 (144)
T ss_dssp TSSBCCHHHHHHHHCCEEEETTEEEEECCCCHHHHHHHHHHHHHTTSEECCSS--------------------SSC----
T ss_pred hcCCCcHHHHHHHHCCCCCCCCCCccccccCcHHHHHHHHHHHHCCCeeecCC--------------------CCc----
Confidence 34566677777776642 12456788999999999986422 234
Q ss_pred eecCchhhchHHHHHHHHHhc
Q 012112 448 RLSDPEGFLLSNELISHAFGV 468 (471)
Q Consensus 448 ~lt~~~G~~~~n~i~~~~~~~ 468 (471)
+|| ++|+-+.|.|+.+.+..
T Consensus 123 ~lT-~~G~~~LD~iA~~v~~~ 142 (144)
T 3u5c_T 123 RIS-ENGQRDLDRIAAQTLEE 142 (144)
T ss_dssp EEC-HHHHHHHHHHHHHHHHH
T ss_pred EEC-HhHHHHHHHHHHHHHhc
Confidence 786 99999999999988764
No 117
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=76.90 E-value=12 Score=35.22 Aligned_cols=116 Identities=7% Similarity=0.063 Sum_probs=68.5
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHC--CC---CEEEEccCCCCH--H
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDL--GV---NRVSLGVQAFQD--E 187 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~--Gv---nrvsiGvQS~~d--~ 187 (471)
.+-|-+|||.+..-..+.+.+++..++..+ +..+++- +.+.+.++.-.++ |. |.||.+ + ++ +
T Consensus 39 AdiIDIg~g~~~v~~~ee~~rvv~~i~~~~----~~pisID----T~~~~v~~aAl~a~~Ga~iINdvs~~-~--d~~~~ 107 (262)
T 1f6y_A 39 ARALDLNVGPAVQDKVSAMEWLVEVTQEVS----NLTLCLD----STNIKAIEAGLKKCKNRAMINSTNAE-R--EKVEK 107 (262)
T ss_dssp CSEEEEBCC----CHHHHHHHHHHHHHTTC----CSEEEEE----CSCHHHHHHHHHHCSSCEEEEEECSC-H--HHHHH
T ss_pred CcEEEECCCCCCCChHHHHHHHHHHHHHhC----CCeEEEe----CCCHHHHHHHHhhCCCCCEEEECCCC-c--ccHHH
Confidence 577889998776656678999999998742 3456665 4567777666665 74 334433 1 22 3
Q ss_pred HHHH----------cC---C--CCCH----HHHHHHHHHHHHcCCC--eeEeeeecCCCCCCHHH---HHHHHHHHHh
Q 012112 188 LLKS----------CG---R--AHGL----KEVYEAIEIVKLCGVE--NWSLDLISSLPHQTPQM---WEESLRRTVG 241 (471)
Q Consensus 188 ~L~~----------l~---R--~~t~----~~~~~ai~~~~~~G~~--~v~~DlI~GlPgqT~e~---~~~~l~~~~~ 241 (471)
++.. |. + +.+. +-..+.++.+.++|+. +|-+|-.+|-.|-+.+. ..+.++.+.+
T Consensus 108 ~~~~~a~~~~~vvlmh~~~~G~p~t~~~~~~~~~~~~~~a~~~Gi~~~~IilDPg~g~~g~~~~~~~~~l~~l~~l~~ 185 (262)
T 1f6y_A 108 LFPLAVEHGAALIGLTMNKTGIPKDSDTRLAFAMELVAAADEFGLPMEDLYIDPLILPANVAQDHAPEVLKTLQQIKM 185 (262)
T ss_dssp HHHHHHHTTCEEEEESCCSSCSCSSHHHHHHHHHHHHHHHHHHTCCGGGEEEECCCCCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEeCCCCcCCCChHHHHHHHHHHHHHHH
Confidence 4432 11 2 1233 3345667788889996 68899888755666553 3444444444
No 118
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=76.61 E-value=10 Score=35.44 Aligned_cols=111 Identities=11% Similarity=-0.028 Sum_probs=71.9
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeee---------------cCCCCC
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLI---------------SSLPHQ 227 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI---------------~GlPgq 227 (471)
++.++.++++|++.|.+...... ..+.+++.+..+.++++|+.-.++..- +|.+..
T Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~~---------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 94 (290)
T 3tva_A 24 GVHLEVAQDLKVPTVQVHAPHPH---------TRTREHAQAFRAKCDAAGIQVTVIFGGFDGESYADIPTTARTVGLVPL 94 (290)
T ss_dssp SBCHHHHHHTTCSEEEEECCCGG---------GCSHHHHHHHHHHHHHTTCEEEEEECCCTTCCCSSHHHHHHHSSSCST
T ss_pred HHHHHHHHHcCCCEEEecCCCCC---------cCCHHHHHHHHHHHHHcCCEEEEEeeccCCcccccccccccccCCCCH
Confidence 57899999999999999875421 135677888888899999973333210 122221
Q ss_pred -----CHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 228 -----TPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 228 -----T~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
+.+.+++.++.+.+++++.|.+.+ |.. ... .....+...+.+..+.+..++.|..
T Consensus 95 ~~r~~~~~~~~~~i~~a~~lG~~~v~~~~-----G~~------~~~-~~~~~~~~~~~l~~l~~~a~~~Gv~ 154 (290)
T 3tva_A 95 ETRASRVAEMKEISDFASWVGCPAIGLHI-----GFV------PES-SSPDYSELVRVTQDLLTHAANHGQA 154 (290)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTCSEEEECC-----CCC------CCT-TSHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEcC-----CCC------ccc-chHHHHHHHHHHHHHHHHHHHcCCE
Confidence 346788888999999999887653 210 000 1112244566677778888888865
No 119
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Probab=76.36 E-value=30 Score=33.17 Aligned_cols=121 Identities=12% Similarity=0.127 Sum_probs=76.1
Q ss_pred eeEEEEcC-----CCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEE-EEccCCCCHHH
Q 012112 115 LETVFFGG-----GTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRV-SLGVQAFQDEL 188 (471)
Q Consensus 115 v~~i~fGG-----GTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gvnrv-siGvQS~~d~~ 188 (471)
.+-|-+|| |.+.+-..+++++++..|+..-.. +..++|. +.+.+.++.--++|..-| ++.-.. ++++
T Consensus 60 AdiIDIGgeSTrPga~~v~~~eE~~Rv~pvi~~l~~~--~vpiSID----T~~~~Va~aAl~aGa~iINdVsg~~-d~~m 132 (294)
T 2y5s_A 60 ADLLDIGGESTRPGAPPVPLDEELARVIPLVEALRPL--NVPLSID----TYKPAVMRAALAAGADLINDIWGFR-QPGA 132 (294)
T ss_dssp CSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHGGG--CSCEEEE----CCCHHHHHHHHHHTCSEEEETTTTC-STTH
T ss_pred CCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHhhC--CCeEEEE----CCCHHHHHHHHHcCCCEEEECCCCC-chHH
Confidence 56777988 333333356788887777665321 3456654 667788877777786554 344444 6777
Q ss_pred HHHcCC-------------CCC---------------HHHHHHHHHHHHHcCCC--eeEeeeecCCCCCCH-HHHHHHHH
Q 012112 189 LKSCGR-------------AHG---------------LKEVYEAIEIVKLCGVE--NWSLDLISSLPHQTP-QMWEESLR 237 (471)
Q Consensus 189 L~~l~R-------------~~t---------------~~~~~~ai~~~~~~G~~--~v~~DlI~GlPgqT~-e~~~~~l~ 237 (471)
+..+.+ +.+ .+...+.++.+.++|+. +|-+|--+|+ +-|. ++=.+.|+
T Consensus 133 ~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~~~~IilDPG~Gf-~kt~~~~n~~ll~ 211 (294)
T 2y5s_A 133 IDAVRDGNSGLCAMHMLGEPQTMQVGEPDYGDVVTDVRDFLAARAQALRDAGVAAERICVDPGFGF-GKAVVDDNYALLA 211 (294)
T ss_dssp HHHHSSSSCEEEEECCCEETTTTEECCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTS-SSCTTHHHHHHHH
T ss_pred HHHHHHhCCCEEEECCCCCCccccccCCccccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCcc-cccchHHHHHHHH
Confidence 765321 111 44566778888899998 7999988888 5665 55555555
Q ss_pred HHHhCC
Q 012112 238 RTVGAQ 243 (471)
Q Consensus 238 ~~~~l~ 243 (471)
.+.++.
T Consensus 212 ~l~~l~ 217 (294)
T 2y5s_A 212 ALPDTA 217 (294)
T ss_dssp TGGGGS
T ss_pred HHHHHH
Confidence 555443
No 120
>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A
Probab=75.83 E-value=38 Score=32.10 Aligned_cols=115 Identities=17% Similarity=0.221 Sum_probs=74.8
Q ss_pred CCHHHHHHHHHCCCCEEEEccCCCCHHHHH-HcCCCCC---HHHHHHHHHHHHHcCCCeeEeeeecCCCC------CCHH
Q 012112 161 FDARKMEELMDLGVNRVSLGVQAFQDELLK-SCGRAHG---LKEVYEAIEIVKLCGVENWSLDLISSLPH------QTPQ 230 (471)
Q Consensus 161 l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~-~l~R~~t---~~~~~~ai~~~~~~G~~~v~~DlI~GlPg------qT~e 230 (471)
.+++.++.|++.|+|-|-+.+. . +.+.. ...-..+ .+.+.++|+.+++.|+. |-+|+- ..++ .+.+
T Consensus 32 ~~~~di~~~~~~G~n~vRi~i~-w-~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~gi~-vild~h-~~~~~~g~~~~~~~ 107 (305)
T 1h1n_A 32 PDPNTIDTLISKGMNIFRVPFM-M-ERLVPNSMTGSPDPNYLADLIATVNAITQKGAY-AVVDPH-NYGRYYNSIISSPS 107 (305)
T ss_dssp CCHHHHHHHHHTTCCEEEEEEC-H-HHHSCSSTTSCCCHHHHHHHHHHHHHHHHTTCE-EEEEEC-CTTEETTEECCCHH
T ss_pred CCHHHHHHHHHCCCCEEEeccc-H-HHcCCCCCCCCcCHHHHHHHHHHHHHHHHCCCE-EEEecc-ccccccCCcCCcHH
Confidence 4799999999999996666552 1 10000 0011112 35588899999999997 777764 2222 2467
Q ss_pred HHHHHHHHHHh-CC-CCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q 012112 231 MWEESLRRTVG-AQ-PKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGY 293 (471)
Q Consensus 231 ~~~~~l~~~~~-l~-p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy 293 (471)
.+.+-.+.+.+ ++ -++| .|.+.-||... +.+.....++.+.+.+.+.|=
T Consensus 108 ~~~~~~~~ia~~~~~~~~V-~~~l~NEP~~~-------------~~~~w~~~~~~~~~~IR~~~~ 158 (305)
T 1h1n_A 108 DFETFWKTVASQFASNPLV-IFDTDNEYHDM-------------DQTLVLNLNQAAIDGIRSAGA 158 (305)
T ss_dssp HHHHHHHHHHHTSTTCTTE-EEECCSCCCSS-------------CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCCeE-EEeccCCCCCC-------------CHHHHHHHHHHHHHHHHhcCC
Confidence 77777666654 32 2478 89988888542 235566788888888988776
No 121
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=75.71 E-value=11 Score=37.81 Aligned_cols=87 Identities=22% Similarity=0.315 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHC-CCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEe-------eeecCCCC--CCHH
Q 012112 161 FDARKMEELMDL-GVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSL-------DLISSLPH--QTPQ 230 (471)
Q Consensus 161 l~~e~l~~l~~~-GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~-------DlI~GlPg--qT~e 230 (471)
.+++.|+.++++ |++-|.+++--+.. +-.-+.+++.+.-+.+.++|+.-.++ |+.+|.+. +..+
T Consensus 31 ~d~~~L~~i~q~~G~~gIe~~l~~~~~------g~~w~~~~i~~lk~~l~~~GL~i~~i~s~~~~~~i~~~~~~r~~~ie 104 (386)
T 3bdk_A 31 KDPVTLEEIKAIPGMQGIVTAVYDVPV------GQAWPLENILELKKMVEEAGLEITVIESIPVHEDIKQGKPNRDALIE 104 (386)
T ss_dssp TCSSCHHHHHTSTTCCEEEECCCSSCS------SSCCCHHHHHHHHHHHHTTTCEEEEEECCCCCHHHHTTCTTHHHHHH
T ss_pred CCHHHHHHHHhcCCCCEEEeCCcccCC------CCCCCHHHHHHHHHHHHHcCCEEEEEeccccccccccCcHHHHHHHH
Confidence 356689999999 99999998754431 33346778888888899999872222 34444222 2347
Q ss_pred HHHHHHHHHHhCCCCcEEEEeccc
Q 012112 231 MWEESLRRTVGAQPKHVSVYDLQV 254 (471)
Q Consensus 231 ~~~~~l~~~~~l~p~his~y~l~~ 254 (471)
.+++.++.+.+++++.| +|.+++
T Consensus 105 ~~k~~i~~aa~lGi~~v-~~nf~p 127 (386)
T 3bdk_A 105 NYKTSIRNVGAAGIPVV-CYNFMP 127 (386)
T ss_dssp HHHHHHHHHHTTTCCEE-EECCCS
T ss_pred HHHHHHHHHHHcCCCEE-EEcCcc
Confidence 78889999999999977 556553
No 122
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=75.65 E-value=8.9 Score=32.60 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=43.8
Q ss_pred cCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHH
Q 012112 382 ARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNEL 461 (471)
Q Consensus 382 ~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i 461 (471)
..+....++.+..|.+-. .+...|+.|++.|+|...... .++.-.++|| ++|..+...+
T Consensus 35 ~g~~~~~eLa~~lgis~~-tls~~L~~Le~~GlI~r~~~~-------------------~d~~~~y~LT-~~G~~l~~~l 93 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKN-ILAARLRNLVEHGVMVAVPAE-------------------SGSHQEYRLT-DKGRALFPLL 93 (146)
T ss_dssp TTCCSHHHHHHHHCCCHH-HHHHHHHHHHHTTSEEEEECS-------------------SSSCEEEEEC-HHHHTTHHHH
T ss_pred hCCCCHHHHHHHhCCCHH-HHHHHHHHHHHCCCEEEEecC-------------------CCCeEEEEEC-chHHHHHHHH
Confidence 456899999999998854 577899999999999865321 0111257997 9999887554
No 123
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=75.26 E-value=9.2 Score=30.42 Aligned_cols=67 Identities=10% Similarity=0.078 Sum_probs=47.3
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
.++..| ...++...++.+.+|.+.. .+...++.|.+.|+|....++ |.-+++|| ++
T Consensus 25 ~IL~~L-~~~~~~~~ela~~l~is~~-tv~~~l~~L~~~gli~~~~~g---------------------r~~~y~l~-~~ 80 (114)
T 2oqg_A 25 EILTEL-GRADQSASSLATRLPVSRQ-AIAKHLNALQACGLVESVKVG---------------------REIRYRAL-GA 80 (114)
T ss_dssp HHHHHH-HHSCBCHHHHHHHSSSCHH-HHHHHHHHHHHTTSEEEEEET---------------------TEEEEEEC-SH
T ss_pred HHHHHH-HcCCCCHHHHHHHHCcCHH-HHHHHHHHHHHCCCeeEEecC---------------------CEEEEEec-hH
Confidence 344445 4567999999999999865 467789999999999864321 22367896 89
Q ss_pred hhchHHHHHHH
Q 012112 454 GFLLSNELISH 464 (471)
Q Consensus 454 G~~~~n~i~~~ 464 (471)
|......++..
T Consensus 81 ~~~~~~~~~~~ 91 (114)
T 2oqg_A 81 ELNKTARTLER 91 (114)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 97665544433
No 124
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=75.23 E-value=17 Score=33.77 Aligned_cols=116 Identities=10% Similarity=0.030 Sum_probs=70.2
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCC-----CCHHHHHHHHH
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPH-----QTPQMWEESLR 237 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg-----qT~e~~~~~l~ 237 (471)
++.++.++++|++.|.+..- ...-+. ..+.+++.+..+.++++|+.-+++...+++|. +..+.+++.++
T Consensus 18 ~~~l~~~~~~G~~~vEl~~~--~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 91 (286)
T 3dx5_A 18 TDIVQFAYENGFEGIELWGT--HAQNLY----MQEYETTERELNCLKDKTLEITMISDYLDISLSADFEKTIEKCEQLAI 91 (286)
T ss_dssp HHHHHHHHHTTCCEEEEEHH--HHHHHH----HHCHHHHHHHHHHTGGGTCCEEEEECCCCCSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEccc--cccccc----ccCHHHHHHHHHHHHHcCCeEEEEecCCCCCCchhHHHHHHHHHHHHH
Confidence 58899999999999988321 001111 12456677777888889998444433333332 13467788888
Q ss_pred HHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 238 RTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 238 ~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
.+.+++++.|.+.+-...++ . .....-+...+.+..+.+..++.|..
T Consensus 92 ~A~~lG~~~v~~~~g~~~~~-----~-----~~~~~~~~~~~~l~~l~~~a~~~Gv~ 138 (286)
T 3dx5_A 92 LANWFKTNKIRTFAGQKGSA-----D-----FSQQERQEYVNRIRMICELFAQHNMY 138 (286)
T ss_dssp HHHHHTCCEEEECSCSSCGG-----G-----SCHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHhCCCEEEEcCCCCCcc-----c-----CcHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 99999999887754221110 0 00001134456677777888888864
No 125
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=74.18 E-value=11 Score=34.10 Aligned_cols=55 Identities=11% Similarity=0.053 Sum_probs=44.3
Q ss_pred cCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHH
Q 012112 382 ARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNEL 461 (471)
Q Consensus 382 ~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i 461 (471)
...+...+++++.|.+.. .....++.|.++||+.... +.+.|| ++|..++..+
T Consensus 28 ~~~V~~~~LA~~LgvS~~-SV~~~lkkL~e~GLV~~~~-------------------------~Gv~LT-e~G~~~A~~i 80 (200)
T 2p8t_A 28 KEPLGRKQISERLELGEG-SVRTLLRKLSHLDIIRSKQ-------------------------RGHFLT-LKGKEIRDKL 80 (200)
T ss_dssp TSCBCHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEC---------------------------CEEEC-HHHHHHHHHH
T ss_pred cCCccHHHHHHHhCCCHH-HHHHHHHHHHHCCCEEEeC-------------------------CCeEEC-HHHHHHHHHH
Confidence 367889999999998854 5678999999999998643 258996 9999999887
Q ss_pred HH
Q 012112 462 IS 463 (471)
Q Consensus 462 ~~ 463 (471)
..
T Consensus 81 ~~ 82 (200)
T 2p8t_A 81 LS 82 (200)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 126
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=73.94 E-value=6.4 Score=31.41 Aligned_cols=56 Identities=13% Similarity=0.023 Sum_probs=37.2
Q ss_pred hhHHHHhCCCh-HHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHHHHHH
Q 012112 388 KSFGETFGCSL-VHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNELISHA 465 (471)
Q Consensus 388 ~~~~~~fg~~~-~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i~~~~ 465 (471)
+++.++|+.++ ...+-+.|.+|+++|||....+. +.-+.+|| ++|.....+.....
T Consensus 32 ~ei~~~~~~~is~GtlYp~L~rLe~~GlI~~~~~~---------------------~rk~Y~iT-~~Gr~~l~~~~~~~ 88 (99)
T 2co5_A 32 SEILKRFDIDISDGVLYPLIDSLIDDKILREEEAP---------------------DGKVLFLT-EKGMKEFEELHEFF 88 (99)
T ss_dssp HHHHHHHCCBCCHHHHHHHHHHHHHTTSEEEECCT---------------------TSCEEEEC-HHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCcHHHHHHHHHHCCCEEEeeCC---------------------CcEEEEEC-HHHHHHHHHHHHhH
Confidence 34455555333 23466899999999999865321 12368997 99998887766554
No 127
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=73.77 E-value=13 Score=34.88 Aligned_cols=115 Identities=11% Similarity=0.077 Sum_probs=71.1
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCC--------CC-----CCH
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSL--------PH-----QTP 229 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl--------Pg-----qT~ 229 (471)
++.++.++++|++.|.+....+. ..+.+++.+..+.++++|+. +.. +.+. |. ++.
T Consensus 20 ~~~l~~~~~~G~~~vEl~~~~~~---------~~~~~~~~~~~~~l~~~gl~-i~~--~~~~~~~~~l~~~d~~~r~~~~ 87 (294)
T 3vni_A 20 KYYIEKVAKLGFDILEIAASPLP---------FYSDIQINELKACAHGNGIT-LTV--GHGPSAEQNLSSPDPDIRKNAK 87 (294)
T ss_dssp HHHHHHHHHHTCSEEEEESTTGG---------GCCHHHHHHHHHHHHHTTCE-EEE--EECCCGGGCTTCSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEecCcccC---------CcCHHHHHHHHHHHHHcCCe-EEE--eecCCCCcCCCCCCHHHHHHHH
Confidence 68999999999999999876521 23667788888899999997 544 2222 22 124
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 230 QMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 230 e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
+.+++.++.+.+++++.|.+. +.+|.+. .+..+.-.....+...+.+..+.+..++.|..
T Consensus 88 ~~~~~~i~~a~~lG~~~v~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~ 147 (294)
T 3vni_A 88 AFYTDLLKRLYKLDVHLIGGA---LYSYWPI--DYTKTIDKKGDWERSVESVREVAKVAEACGVD 147 (294)
T ss_dssp HHHHHHHHHHHHHTCCEEEES---TTSCSSC--CTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHhCCCeeecc---ccCCCCC--cCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 667788889999999988631 1122210 00000000001234455667777778888865
No 128
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=73.77 E-value=15 Score=28.92 Aligned_cols=51 Identities=12% Similarity=0.030 Sum_probs=41.1
Q ss_pred CCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHH
Q 012112 384 GVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNEL 461 (471)
Q Consensus 384 gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i 461 (471)
|+....+....|.+.. .+...++.|.+.||+...++ .+.|| ++|..+.+.+
T Consensus 20 ~~~~t~La~~~~ls~~-~~~~~l~~L~~~GLI~~~~~-------------------------~~~LT-~kG~~~l~~l 70 (95)
T 1r7j_A 20 GSPKTRIMYGANLSYA-LTGRYIKMLMDLEIIRQEGK-------------------------QYMLT-KKGEELLEDI 70 (95)
T ss_dssp CBCHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEETT-------------------------EEEEC-HHHHHHHHHH
T ss_pred CCCHHHHHHHhCcCHH-HHHHHHHHHHHCCCeEEECC-------------------------eeEEC-hhHHHHHHHH
Confidence 4888899999999865 57789999999999987643 26886 9999877654
No 129
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=72.68 E-value=9.7 Score=35.16 Aligned_cols=80 Identities=8% Similarity=0.067 Sum_probs=49.9
Q ss_pred HHHHHHHHHCCCCEEEEc-cCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCC--C-----CCHHHHHH
Q 012112 163 ARKMEELMDLGVNRVSLG-VQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLP--H-----QTPQMWEE 234 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiG-vQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlP--g-----qT~e~~~~ 234 (471)
++.++.++++|++.|.+. ..... ..+. . .+..+..+.++++|+.-.++..-+.+. . +..+.+++
T Consensus 17 ~~~l~~~~~~G~~~vEl~~~~~~~----~~~~-~---~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (278)
T 1i60_A 17 KLDLELCEKHGYDYIEIRTMDKLP----EYLK-D---HSLDDLAEYFQTHHIKPLALNALVFFNNRDEKGHNEIITEFKG 88 (278)
T ss_dssp HHHHHHHHHTTCSEEEEETTTHHH----HHTT-S---SCHHHHHHHHHTSSCEEEEEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEccHHHHH----HHhc-c---CCHHHHHHHHHHcCCCeeeeccccccccCCHHHHHHHHHHHHH
Confidence 578888889999988887 54321 1111 1 233445566778888733344433332 1 12466777
Q ss_pred HHHHHHhCCCCcEEEE
Q 012112 235 SLRRTVGAQPKHVSVY 250 (471)
Q Consensus 235 ~l~~~~~l~p~his~y 250 (471)
.++.+.+++++.|.+.
T Consensus 89 ~i~~a~~lG~~~v~~~ 104 (278)
T 1i60_A 89 MMETCKTLGVKYVVAV 104 (278)
T ss_dssp HHHHHHHHTCCEEEEE
T ss_pred HHHHHHHcCCCEEEEe
Confidence 8888888898888774
No 130
>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3
Probab=72.52 E-value=9.1 Score=37.10 Aligned_cols=125 Identities=9% Similarity=0.002 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHCCCCEEEEcc--CCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCC----------
Q 012112 160 TFDARKMEELMDLGVNRVSLGV--QAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQ---------- 227 (471)
Q Consensus 160 ~l~~e~l~~l~~~GvnrvsiGv--QS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgq---------- 227 (471)
.++++.++.|+++|+|-|-+.+ ..+.++.-...-.....+.+.++++.+++.|+. |-+|+-. .||.
T Consensus 36 ~~~~~d~~~i~~~G~n~vRi~i~~~~~~~~~~p~~~~~~~~~~ld~~v~~a~~~Gi~-vildlh~-~pg~~~~~~~~~~~ 113 (341)
T 1vjz_A 36 NFKEEDFLWMAQWDFNFVRIPMCHLLWSDRGNPFIIREDFFEKIDRVIFWGEKYGIH-ICISLHR-APGYSVNKEVEEKT 113 (341)
T ss_dssp CCCHHHHHHHHHTTCCEEEEEEEGGGTSCSSCTTCCCGGGHHHHHHHHHHHHHHTCE-EEEEEEE-ETTEESCTTSCCSS
T ss_pred CCCHHHHHHHHHcCCCEEEeeCCHHHhcCCCCCCcCCHHHHHHHHHHHHHHHHcCCE-EEEEecC-CCCcccccCCCccc
Confidence 5789999999999999555543 333221000000112467788999999999997 8888754 3431
Q ss_pred ----C---HHHHHHHHHHHHh-CC-C-CcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 228 ----T---PQMWEESLRRTVG-AQ-P-KHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 228 ----T---~e~~~~~l~~~~~-l~-p-~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
+ .+.+.+-++.+.+ ++ - +.+-.|.+.-||..... +. .+.+...+.++.+.+.+++.+-.
T Consensus 114 ~~~~~~~~~~~~~~~~~~ia~ry~~~~~~v~~~el~NEP~~~~~-----~~---~~~~~~~~~~~~~~~~IR~~~~~ 182 (341)
T 1vjz_A 114 NLWKDETAQEAFIHHWSFIARRYKGISSTHLSFNLINEPPFPDP-----QI---MSVEDHNSLIKRTITEIRKIDPE 182 (341)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHHTTSCTTTEEEECSSCCCCCBT-----TT---BCHHHHHHHHHHHHHHHHHHCTT
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeccCCCCCCc-----cc---ccHHHHHHHHHHHHHHHHhhCCC
Confidence 1 3334444444433 22 1 33557888777754321 10 13455667777777877776544
No 131
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=72.41 E-value=12 Score=29.77 Aligned_cols=58 Identities=17% Similarity=0.138 Sum_probs=42.9
Q ss_pred CCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHHH
Q 012112 383 RGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNELI 462 (471)
Q Consensus 383 ~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i~ 462 (471)
..+...+++++.+.+-. .+...+.+|++.||+....++ +.| +.+.|| ++|+.+..+.+
T Consensus 35 ~~~s~~eLa~~l~l~~s-tLsR~l~rLe~~GLV~r~~~~-------------------D~R-~~v~LT-~~G~~~l~~~~ 92 (96)
T 2obp_A 35 TPWSLPKIAKRAQLPMS-VLRRVLTQLQAAGLADVSVEA-------------------DGR-GHASLT-QEGAALAAQLF 92 (96)
T ss_dssp CCCBHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEEECT-------------------TSC-EEEEEC-HHHHHHHHHHC
T ss_pred CCcCHHHHHHHhCCchh-hHHHHHHHHHHCCCEEeecCC-------------------CCc-eeEEEC-HHHHHHHHHhc
Confidence 34889999999988854 577889999999999864321 223 258997 99998876543
No 132
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=72.15 E-value=4.6 Score=34.58 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHHHHHHHhcc
Q 012112 401 TLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNELISHAFGVI 469 (471)
Q Consensus 401 ~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i~~~~~~~~ 469 (471)
.....|+.|++.|+++...+ +.| +|| ++|+-+.|.|..+++..+
T Consensus 102 iiR~~LQqLE~~g~Vek~~~--------------------gGR----~lT-~~G~~~LD~iA~~v~~~~ 145 (146)
T 3iz6_S 102 ISRNILQQLQKMGIIDVDPK--------------------GGR----LIT-SQGRRDLDQVAGRVDVTI 145 (146)
T ss_dssp HHHHHHHHHHHHTSEEEETT--------------------TEE----EEC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEecCC--------------------CCc----EEC-HhHHHHHHHHHHHHHHhh
Confidence 45678999999999987542 233 786 999999999999887654
No 133
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=71.50 E-value=17 Score=33.42 Aligned_cols=111 Identities=12% Similarity=0.038 Sum_probs=67.0
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeee--ecCCCC-----CCHHHHHHH
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDL--ISSLPH-----QTPQMWEES 235 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~Dl--I~GlPg-----qT~e~~~~~ 235 (471)
++.++.++++|++.|.+.... + +..+..+..+.++++|+.-.++.. -+.-|. ++.+.+++.
T Consensus 21 ~~~l~~~~~~G~~~vEl~~~~-----~-------~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~d~~~r~~~~~~~~~~ 88 (275)
T 3qc0_A 21 AEAVDICLKHGITAIAPWRDQ-----V-------AAIGLGEAGRIVRANGLKLTGLCRGGFFPAPDASGREKAIDDNRRA 88 (275)
T ss_dssp HHHHHHHHHTTCCEEECBHHH-----H-------HHHCHHHHHHHHHHHTCEESCEEEEECCCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEecccc-----c-------cccCHHHHHHHHHHcCCceEEeecCCCcCCCCHHHHHHHHHHHHHH
Confidence 689999999999999986521 1 134456666778888986322221 122222 124678889
Q ss_pred HHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 236 LRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 236 l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
++.+.+++++.|.+.+-...++.. -.....+...+.+..+.+..++.|..
T Consensus 89 i~~a~~lG~~~v~~~~g~~~~~~~---------~~~~~~~~~~~~l~~l~~~a~~~gv~ 138 (275)
T 3qc0_A 89 VDEAAELGADCLVLVAGGLPGGSK---------NIDAARRMVVEGIAAVLPHARAAGVP 138 (275)
T ss_dssp HHHHHHTTCSCEEEECBCCCTTCC---------CHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCCCEEEEeeCCCCCCCc---------CHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 999999999998876422111100 00001133455667777777787865
No 134
>3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel, hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A 3azs_A* 3azr_A* 3azt_A*
Probab=71.49 E-value=8.7 Score=36.67 Aligned_cols=115 Identities=10% Similarity=0.123 Sum_probs=69.2
Q ss_pred CCCHHHHHHHHHCCCCEEEEccC--CCCHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCCeeEeeeecCCCC------
Q 012112 160 TFDARKMEELMDLGVNRVSLGVQ--AFQDELLKSCGRAHG-----LKEVYEAIEIVKLCGVENWSLDLISSLPH------ 226 (471)
Q Consensus 160 ~l~~e~l~~l~~~GvnrvsiGvQ--S~~d~~L~~l~R~~t-----~~~~~~ai~~~~~~G~~~v~~DlI~GlPg------ 226 (471)
.++++.++.|++.|+|.|-+.+. .+.++ .-..+ .+.+.++++.+++.|+. |-+|+- +.|+
T Consensus 33 ~~~~~d~~~l~~~G~n~vR~~i~w~~~~~~-----~~~~~~~~~~~~~~d~~v~~a~~~Gi~-vild~h-~~~~~~~~~~ 105 (317)
T 3aof_A 33 VIKDEFFDIIKEAGFSHVRIPIRWSTHAYA-----FPPYKIMDRFFKRVDEVINGALKRGLA-VVINIH-HYEELMNDPE 105 (317)
T ss_dssp CCCTHHHHHHHHHTCSEEEECCCGGGGBCS-----STTCCBCHHHHHHHHHHHHHHHHTTCE-EEEECC-CCHHHHHCHH
T ss_pred CCCHHHHHHHHHcCCCEEEEeccHHHhcCC-----CCCCcCCHHHHHHHHHHHHHHHHCCCE-EEEEec-CCccccCCcH
Confidence 36889999999999997766542 22110 00111 56678899999999997 777763 2222
Q ss_pred CCHHHHHHHHHHHHh-CC--CCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 227 QTPQMWEESLRRTVG-AQ--PKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 227 qT~e~~~~~l~~~~~-l~--p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
+..+.+.+-++.+.+ ++ +. +-.|.+.=||... .+.+...+.+..+.+.+++.+=.
T Consensus 106 ~~~~~~~~~~~~ia~~~~~~~~-v~~~el~NEP~~~------------~~~~~~~~~~~~~~~~iR~~~p~ 163 (317)
T 3aof_A 106 EHKERFLALWKQIADRYKDYPE-TLFFEILNAPHGN------------LTPEKWNELLEEALKVIRSIDKK 163 (317)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCT-TEEEECCSSCCTT------------SCHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHhcCCCC-eEEEEeccCCCCC------------CCHHHHHHHHHHHHHHHHhhCCC
Confidence 123444444444433 22 33 3468887777542 13455556777777777765433
No 135
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=71.19 E-value=7.8 Score=33.30 Aligned_cols=71 Identities=18% Similarity=0.315 Sum_probs=52.4
Q ss_pred HHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecC
Q 012112 372 MDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSD 451 (471)
Q Consensus 372 ~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~ 451 (471)
...|+.-|. ..++...++.+.+|.+-. .+...|+.|.+.|||....++ |.-+++||
T Consensus 60 R~~IL~~L~-~~~~t~~eLa~~lgls~s-tvs~hL~~L~~aGlV~~~~~G---------------------r~~~y~lt- 115 (151)
T 3f6v_A 60 RRRLVQLLT-SGEQTVNNLAAHFPASRS-AISQHLRVLTEAGLVTPRKDG---------------------RFRYYRLD- 115 (151)
T ss_dssp HHHHHHHGG-GCCEEHHHHHTTSSSCHH-HHHHHHHHHHHTTSEEEEEET---------------------TEEEEEEC-
T ss_pred HHHHHHHHH-hCCCCHHHHHHHHCcCHH-HHHHHHHHHHHCCCEEEEecC---------------------CEEEEEEC-
Confidence 345556665 567999999999998854 467889999999999865422 22368996
Q ss_pred chhhchHHHHHHHHH
Q 012112 452 PEGFLLSNELISHAF 466 (471)
Q Consensus 452 ~~G~~~~n~i~~~~~ 466 (471)
++|+.....++..++
T Consensus 116 ~~~~~~l~~~l~~~~ 130 (151)
T 3f6v_A 116 PQGLAQLRALFDSFW 130 (151)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHH
Confidence 899877777666554
No 136
>4hty_A Cellulase; (alpha/beta)8 barrel, family 5 endoglucanase, hydrolase; 2.00A {Uncultured bacterium} PDB: 4hu0_A*
Probab=70.63 E-value=33 Score=33.45 Aligned_cols=122 Identities=18% Similarity=0.155 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHCCCCEE--EEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCC------------
Q 012112 161 FDARKMEELMDLGVNRV--SLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPH------------ 226 (471)
Q Consensus 161 l~~e~l~~l~~~Gvnrv--siGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg------------ 226 (471)
..++.++.|++.|+|-| .+..+++.+ .+.....+.+.++++.+.+.|+. |-+|+-- .++
T Consensus 86 ~~~~di~~ik~~G~N~VRi~~~~~~~~~-----~~~~~~l~~ld~~v~~a~~~Gi~-Vild~H~-~~~~~~~~~~~~~~~ 158 (359)
T 4hty_A 86 FSKKHFEVIRSWGANVVRVPVHPRAWKE-----RGVKGYLELLDQVVAWNNELGIY-TILDWHS-IGNLKSEMFQNNSYH 158 (359)
T ss_dssp CSHHHHHHHHHTTCSEEEEEECHHHHHH-----HHHHHHHHHHHHHHHHHHHTTCE-EEEEECC-EEETTTTEESSGGGC
T ss_pred cCHHHHHHHHhcCCCEEEEeccHHHhhc-----cCCHHHHHHHHHHHHHHHHCCCE-EEEEcCC-CCCCCcccccCCcch
Confidence 45788999999999954 544443322 11122355678899999999997 7777632 221
Q ss_pred CCHHHHHHHHHHHHhC--CCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q 012112 227 QTPQMWEESLRRTVGA--QPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 227 qT~e~~~~~l~~~~~l--~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
.+.+.+.+.++.+.+. +-+.|-.|.+.=||...-.. .+. .+-+...+.++.+.+.+++.+-.+
T Consensus 159 ~~~~~~~~~~~~la~ryk~~p~Vi~~el~NEP~~~~~~---~~~---~~~~~~~~~~~~~~~~IR~~dp~~ 223 (359)
T 4hty_A 159 TTKGETFDFWRRVSERYNGINSVAFYEIFNEPTVFNGR---LGI---ATWAEWKAINEEAITIIQAHNPKA 223 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTCTTEEEEESCSEECCGGGT---TCC---CCHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCC---cCC---CCHHHHHHHHHHHHHHHHHhCCCc
Confidence 3567777777776543 23457678888888653221 111 233456667788888888877654
No 137
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=70.47 E-value=14 Score=28.19 Aligned_cols=54 Identities=4% Similarity=0.049 Sum_probs=42.0
Q ss_pred CCHhhHHHHHHHHhccccC---CCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEec
Q 012112 365 IDAKDLAMDVLMLSFRTAR---GVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLD 419 (471)
Q Consensus 365 l~~~~~~~e~~~~~Lr~~~---gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~ 419 (471)
++..+...+.|..-|+... ++...++++++|.+- ..+...|..|.+.|+|...+
T Consensus 5 ~s~~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr-~tV~~~L~~Le~~G~I~~~g 61 (81)
T 1qbj_A 5 LSIYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPK-KEINRVLYSLAKKGKLQKEA 61 (81)
T ss_dssp -CHHHHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCH-HHHHHHHHHHHHTTSEEEES
T ss_pred cccchHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCH-HHHHHHHHHHHHCCCEEecC
Confidence 4555555666666677666 799999999999986 46788999999999998654
No 138
>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3
Probab=69.86 E-value=73 Score=32.39 Aligned_cols=113 Identities=13% Similarity=0.132 Sum_probs=72.3
Q ss_pred CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCC-CCHHHHHHHH---H
Q 012112 162 DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPH-QTPQMWEESL---R 237 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg-qT~e~~~~~l---~ 237 (471)
+++.++.|++.|+|-|-+.+.... .. .....+.+.++++.+.++|+. |-+|+- +.|| +..+...+.. +
T Consensus 41 ~~~di~~ik~~G~N~VRipv~~g~-----~~-~~~~l~~ld~vv~~a~~~Gl~-VIlDlH-~~~g~~~~~~~~~~~~~w~ 112 (464)
T 1wky_A 41 ATTAIEGIANTGANTVRIVLSDGG-----QW-TKDDIQTVRNLISLAEDNNLV-AVLEVH-DATGYDSIASLNRAVDYWI 112 (464)
T ss_dssp HHHHHHHHHTTTCSEEEEEECCSS-----SS-CCCCHHHHHHHHHHHHHTTCE-EEEEEC-TTTTCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCCEEEEEcCCCC-----cc-CHHHHHHHHHHHHHHHHCCCE-EEEEec-CCCCCCChHHHHHHHHHHH
Confidence 578899999999997666553110 00 023577899999999999997 778864 3443 3223333333 3
Q ss_pred HHH-hCC--CCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q 012112 238 RTV-GAQ--PKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 238 ~~~-~l~--p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
.+. +++ +++| +|.+.=||.... +.+...+.|..+.+.+++.|-.+
T Consensus 113 ~iA~ryk~~~~~V-i~eL~NEP~~~~------------~~~~w~~~~~~~i~aIR~~dp~~ 160 (464)
T 1wky_A 113 EMRSALIGKEDTV-IINIANEWFGSW------------DGAAWADGYKQAIPRLRNAGLNN 160 (464)
T ss_dssp HTGGGTTTCTTTE-EEECCTTCCCSS------------CHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHcCCCCeE-EEEeccCCCCCC------------CHHHHHHHHHHHHHHHHhcCCCC
Confidence 332 232 4677 688888885420 22344567788888888887755
No 139
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}
Probab=69.59 E-value=48 Score=31.86 Aligned_cols=64 Identities=9% Similarity=0.064 Sum_probs=41.0
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHH---HcCCCCCcEEEEEecCCCCCHHHHHHHHH--CCCCEE-EEccCCCCH
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTD---KFGLSLDAEISMEMDPGTFDARKMEELMD--LGVNRV-SLGVQAFQD 186 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~---~~~l~~~~eitiE~~P~~l~~e~l~~l~~--~Gvnrv-siGvQS~~d 186 (471)
.+-|-+|||.+.+-..+.+.+++..|+. .. +..++|. +...+.++.--+ +|..-| |+....+++
T Consensus 51 AdiIDIg~g~~~v~~~eem~rvv~~i~~~~~~~----~vpisID----T~~~~V~eaaL~~~~Ga~iINdIs~~~~d~ 120 (300)
T 3k13_A 51 ALVIDVNMDDGLLDARTEMTTFLNLIMSEPEIA----RVPVMID----SSKWEVIEAGLKCLQGKSIVNSISLKEGEE 120 (300)
T ss_dssp CSEEEEECCCTTSCHHHHHHHHHHHHHTCHHHH----TSCEEEE----CSCHHHHHHHHHHCSSCCEEEEECSTTCHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHhhhcC----CCeEEEe----CCCHHHHHHHHHhcCCCCEEEeCCcccCCh
Confidence 5677899988766445788888888863 32 2346655 456777776666 675533 454455555
No 140
>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3
Probab=69.42 E-value=9.7 Score=35.97 Aligned_cols=118 Identities=13% Similarity=0.047 Sum_probs=69.8
Q ss_pred CCCHHHHHHHH-HCCCC--EEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCC-CCHHHHHHH
Q 012112 160 TFDARKMEELM-DLGVN--RVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPH-QTPQMWEES 235 (471)
Q Consensus 160 ~l~~e~l~~l~-~~Gvn--rvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg-qT~e~~~~~ 235 (471)
.++++.++.|+ +.|+| |+.++.+...... .+.....+.+.++++.+.+.|+. |-+|+- +.|+ ...+.+.+-
T Consensus 38 ~~~~~d~~~l~~~~G~N~vR~~~~~~~~~~~~---~~~~~~~~~ld~~v~~a~~~Gi~-vild~h-~~~~~~~~~~~~~~ 112 (291)
T 1egz_A 38 FYTADTVASLKKDWKSSIVRAAMGVQESGGYL---QDPAGNKAKVERVVDAAIANDMY-AIIGWH-SHSAENNRSEAIRF 112 (291)
T ss_dssp GCSHHHHHHHHHTTCCCEEEEEEECSSTTSTT---TCHHHHHHHHHHHHHHHHHTTCE-EEEEEE-CSCGGGGHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCEEEEeccccccCCCc---CCHHHHHHHHHHHHHHHHHCCCE-EEEEcC-CCCcchhHHHHHHH
Confidence 46889999999 89999 5555554211000 00001245677889999999997 777763 3443 345566666
Q ss_pred HHHHHh-C-CCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q 012112 236 LRRTVG-A-QPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 236 l~~~~~-l-~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
++.+.+ + +-++|- |.+.=||...-. .+...+.++.+.+.+++.+-.+
T Consensus 113 ~~~ia~r~~~~p~V~-~el~NEP~~~~~------------~~~~~~~~~~~~~~IR~~d~~~ 161 (291)
T 1egz_A 113 FQEMARKYGNKPNVI-YEIYNEPLQVSW------------SNTIKPYAEAVISAIRAIDPDN 161 (291)
T ss_dssp HHHHHHHHTTSTTEE-EECCSCCCSCCT------------TTTHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHhCCCCcEE-EEecCCCCCCch------------HHHHHHHHHHHHHHHHhcCCCC
Confidence 555543 2 223575 888888864210 1234456677777777766543
No 141
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=69.29 E-value=2.3 Score=39.55 Aligned_cols=145 Identities=12% Similarity=0.205 Sum_probs=80.6
Q ss_pred HHHHHHHHHcCCCCCcEEEEEe-cCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 012112 135 SILDTLTDKFGLSLDAEISMEM-DPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGV 213 (471)
Q Consensus 135 ~ll~~l~~~~~l~~~~eitiE~-~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~ 213 (471)
.+++.|++..... ..+.+.+ +| ...++.+.++|.+.+++-.+++.+ ...++++.+++.|.
T Consensus 47 ~~v~~lr~~~~~~--~dvhLmv~dp----~~~i~~~~~aGAd~itvh~Ea~~~-------------~~~~~i~~i~~~G~ 107 (231)
T 3ctl_A 47 FFVSQVKKLATKP--LDCHLMVTRP----QDYIAQLARAGADFITLHPETING-------------QAFRLIDEIRRHDM 107 (231)
T ss_dssp HHHHHHHTTCCSC--EEEEEESSCG----GGTHHHHHHHTCSEEEECGGGCTT-------------THHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCc--EEEEEEecCH----HHHHHHHHHcCCCEEEECcccCCc-------------cHHHHHHHHHHcCC
Confidence 4667777664332 3444444 55 346899999999999999887411 24578889999999
Q ss_pred CeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q 012112 214 ENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGY 293 (471)
Q Consensus 214 ~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy 293 (471)
+ +.+.+- |+...+.++.- ++ .+|.|-+ .++.||+. |+.-.|.. .+....+++...+.|+
T Consensus 108 k-~gv~ln---p~tp~~~~~~~----l~-~~D~Vlv--msV~pGfg-------gQ~f~~~~---l~kI~~lr~~~~~~~~ 166 (231)
T 3ctl_A 108 K-VGLILN---PETPVEAMKYY----IH-KADKITV--MTVDPGFA-------GQPFIPEM---LDKLAELKAWREREGL 166 (231)
T ss_dssp E-EEEEEC---TTCCGGGGTTT----GG-GCSEEEE--ESSCTTCS-------SCCCCTTH---HHHHHHHHHHHHHHTC
T ss_pred e-EEEEEE---CCCcHHHHHHH----Hh-cCCEEEE--eeeccCcC-------CccccHHH---HHHHHHHHHHHhccCC
Confidence 7 778774 44333322222 22 4665544 56788764 21112332 2233445566666676
Q ss_pred c-eeccccccCCCcchhhhh--hhhcCCCEEEEc
Q 012112 294 R-HYEISSYGEDGYECKHNL--TYWKNKPFYGFG 324 (471)
Q Consensus 294 ~-~yeis~fa~~g~~~~hn~--~yw~~~~ylG~G 324 (471)
. ..++ .|--...|. ..-.+.|.+-.|
T Consensus 167 ~~~I~V-----dGGI~~~~~~~~~~aGAd~~V~G 195 (231)
T 3ctl_A 167 EYEIEV-----DGSCNQATYEKLMAAGADVFIVG 195 (231)
T ss_dssp CCEEEE-----ESCCSTTTHHHHHHHTCCEEEEC
T ss_pred CceEEE-----ECCcCHHHHHHHHHcCCCEEEEc
Confidence 4 2222 222222222 122466887777
No 142
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=69.21 E-value=34 Score=31.43 Aligned_cols=111 Identities=13% Similarity=0.234 Sum_probs=65.3
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCC--C--CH-------HHHHHHHHCCCCEEEEccCCCCH
Q 012112 118 VFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGT--F--DA-------RKMEELMDLGVNRVSLGVQAFQD 186 (471)
Q Consensus 118 i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~--l--~~-------e~l~~l~~~GvnrvsiGvQS~~d 186 (471)
+..||=|||+ ..++.+.... +.. +..+.+-++|.. + ++ +.++.++++|++-|-+|+-+-|-
T Consensus 31 L~~GGlTPS~---g~i~~~~~~~-~~~----~ipV~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~dg 102 (224)
T 2bdq_A 31 LAVGGTTPSY---GVIKEANQYL-HEK----GISVAVMIRPRGGNFVYNDLELRIMEEDILRAVELESDALVLGILTSNN 102 (224)
T ss_dssp GGGTCBCCCH---HHHHHHHHHH-HHT----TCEEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTS
T ss_pred cccCCcCCCH---HHHHHHHHhh-hhc----CCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCC
Confidence 3467778975 3343332001 332 356888888842 3 43 45667888999999999987543
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEE
Q 012112 187 ELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSV 249 (471)
Q Consensus 187 ~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~ 249 (471)
..+.+...+.++.++ |.. +.+.--|-. -...+..+.++++.++++++|=.
T Consensus 103 --------~iD~~~~~~Li~~a~--~~~-vTFHRAFD~--~~~~d~~~ale~L~~lGv~rILT 152 (224)
T 2bdq_A 103 --------HIDTEAIEQLLPATQ--GLP-LVFHMAFDV--IPKSDQKKSIDQLVALGFTRILL 152 (224)
T ss_dssp --------SBCHHHHHHHHHHHT--TCC-EEECGGGGG--SCTTTHHHHHHHHHHTTCCEEEE
T ss_pred --------CcCHHHHHHHHHHhC--CCe-EEEECchhc--cCCcCHHHHHHHHHHcCCCEEEC
Confidence 345566666665554 443 333222211 00245566788888888887743
No 143
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=69.14 E-value=12 Score=34.35 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=43.1
Q ss_pred CCCCH--hhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHH
Q 012112 383 RGVDL--KSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNE 460 (471)
Q Consensus 383 ~gi~~--~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~ 460 (471)
.|+.. .++++++|.+.. .+...+++|+++||+....+ ..+.|| ++|..++..
T Consensus 21 ~~~~~~~~~La~~l~vs~~-tvs~~l~~Le~~GlV~r~~~------------------------~~v~LT-~~G~~~~~~ 74 (230)
T 1fx7_A 21 EGVTPLRARIAERLDQSGP-TVSQTVSRMERDGLLRVAGD------------------------RHLELT-EKGRALAIA 74 (230)
T ss_dssp HTSCCCHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEECTT------------------------SCEEEC-HHHHHHHHH
T ss_pred cCCCCcHHHHHHHHCcCHH-HHHHHHHHHHHCCCEEEeCC------------------------ccEEEC-HHHHHHHHH
Confidence 36766 899999998854 46789999999999987542 147896 999999887
Q ss_pred HHH
Q 012112 461 LIS 463 (471)
Q Consensus 461 i~~ 463 (471)
+..
T Consensus 75 ~~~ 77 (230)
T 1fx7_A 75 VMR 77 (230)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 144
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=68.03 E-value=2.7 Score=36.90 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=46.5
Q ss_pred HHHhccccC---CCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecC
Q 012112 375 LMLSFRTAR---GVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSD 451 (471)
Q Consensus 375 ~~~~Lr~~~---gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~ 451 (471)
++..|.... |+...++.+..|.+.. .+...++.|++.|||....+. .+.|.-++.||
T Consensus 74 iL~~L~~~~~~~~~t~~eLa~~l~is~~-tvs~~l~~Le~~GlV~r~~~~------------------~DrR~~~~~LT- 133 (181)
T 2fbk_A 74 LLLTLYRSAPPEGLRPTELSALAAISGP-STSNRIVRLLEKGLIERREDE------------------RDRRSASIRLT- 133 (181)
T ss_dssp HHHHHHHHCCSSCBCHHHHHHHCSCCSG-GGSSHHHHHHHHTSEECCC-------------------------CCBEEC-
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHCCCHH-HHHHHHHHHHHCcCEEecCCC------------------CCCCeeEEEEC-
Confidence 344444433 4999999999998753 345689999999999864210 12344468997
Q ss_pred chhhchHHHHHHH
Q 012112 452 PEGFLLSNELISH 464 (471)
Q Consensus 452 ~~G~~~~n~i~~~ 464 (471)
++|..+.+.+...
T Consensus 134 ~~G~~~~~~~~~~ 146 (181)
T 2fbk_A 134 PQGRALVTHLLPA 146 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876443
No 145
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=67.98 E-value=21 Score=33.59 Aligned_cols=107 Identities=14% Similarity=0.154 Sum_probs=64.8
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCC--CC--CH-------HHHHHHHHCCCCEEEEccCCCCH
Q 012112 118 VFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPG--TF--DA-------RKMEELMDLGVNRVSLGVQAFQD 186 (471)
Q Consensus 118 i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~--~l--~~-------e~l~~l~~~GvnrvsiGvQS~~d 186 (471)
+..||=|||+ . +++.+++... ..+.+-++|. ++ ++ +.++.++++|++-|-+|+-+-|-
T Consensus 31 L~~GGlTPS~---g----~i~~~~~~~~----ipv~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~dg 99 (256)
T 1twd_A 31 PKEGGLTPSL---G----VLKSVRQRVT----IPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPGLVTGVLDVDG 99 (256)
T ss_dssp GGGTCBCCCH---H----HHHHHHHHCC----SCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTS
T ss_pred cccCCCCCCH---H----HHHHHHHHcC----CceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCC
Confidence 4467778985 3 3344455433 4577778884 33 43 45667888999999999987542
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 187 ELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 187 ~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y 250 (471)
..+.+...+.++.++ |.. +.+.--|-. + .+..+.++++.++++++|=..
T Consensus 100 --------~iD~~~~~~Li~~a~--~~~-vTFHRAfD~---~-~d~~~ale~L~~lG~~rILTS 148 (256)
T 1twd_A 100 --------NVDMPRMEKIMAAAG--PLA-VTFHRAFDM---C-ANPLYTLNNLAELGIARVLTS 148 (256)
T ss_dssp --------SBCHHHHHHHHHHHT--TSE-EEECGGGGG---C-SCHHHHHHHHHHHTCCEEEEC
T ss_pred --------CcCHHHHHHHHHHhC--CCc-EEEECchhc---c-CCHHHHHHHHHHcCCCEEECC
Confidence 245566666665554 332 332222211 1 345667888888888877433
No 146
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=67.24 E-value=42 Score=31.69 Aligned_cols=95 Identities=16% Similarity=0.185 Sum_probs=65.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEcc----CCCCHHHHHHcCCCCC
Q 012112 122 GGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGV----QAFQDELLKSCGRAHG 197 (471)
Q Consensus 122 GGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGv----QS~~d~~L~~l~R~~t 197 (471)
||--..-..+.+..++..+++ .++++|+-++| +.+.++.-++.|.++|.+=- ..+++...+. .
T Consensus 133 gGlDv~~~~~~L~~~i~~L~~-----~GIrVSLFIDp---d~~qI~aA~~~GAd~IELhTG~YA~a~~~~~~~~-----e 199 (278)
T 3gk0_A 133 GGLDVVGHFDAVRAACKQLAD-----AGVRVSLFIDP---DEAQIRAAHETGAPVIELHTGRYADAHDAAEQQR-----E 199 (278)
T ss_dssp SSBCTTTTHHHHHHHHHHHHH-----TTCEEEEEECS---CHHHHHHHHHHTCSEEEECCHHHHTCSSHHHHHH-----H
T ss_pred cchhhhccHHHHHHHHHHHHH-----CCCEEEEEeCC---CHHHHHHHHHhCcCEEEEecchhhccCCchhHHH-----H
Confidence 443333356778888888876 45789999998 69999999999999999933 2333322221 3
Q ss_pred HHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHH
Q 012112 198 LKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMW 232 (471)
Q Consensus 198 ~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~ 232 (471)
.+.+.++.+.+++.|+. ||. ==||--++...+
T Consensus 200 l~rl~~aA~~A~~lGL~-VnA--GHGL~y~Nv~~i 231 (278)
T 3gk0_A 200 FERIATGVDAGIALGLK-VNA--GHGLHYTNVQAI 231 (278)
T ss_dssp HHHHHHHHHHHHHTTCE-EEE--CTTCCTTTHHHH
T ss_pred HHHHHHHHHHHHHcCCE-Eec--CCCCCHHHHHHH
Confidence 56778888889999986 554 345655665544
No 147
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=67.23 E-value=16 Score=33.60 Aligned_cols=85 Identities=8% Similarity=0.098 Sum_probs=58.8
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHH-HH-cCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHH
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELL-KS-CGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTV 240 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L-~~-l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~ 240 (471)
++.++.++++|++.|.+........-. .. .....+.+++.+..+.++++|+.-+++..- ...+.+.+++.++.+.
T Consensus 25 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~---~~~~~~~~~~~i~~A~ 101 (262)
T 3p6l_A 25 TEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVY---VAEKSSDWEKMFKFAK 101 (262)
T ss_dssp HHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEE---CCSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEecc---CCccHHHHHHHHHHHH
Confidence 588999999999999988754211000 00 012346677888888889999873333322 2467788999999999
Q ss_pred hCCCCcEEEE
Q 012112 241 GAQPKHVSVY 250 (471)
Q Consensus 241 ~l~p~his~y 250 (471)
+++.+.|.+.
T Consensus 102 ~lGa~~v~~~ 111 (262)
T 3p6l_A 102 AMDLEFITCE 111 (262)
T ss_dssp HTTCSEEEEC
T ss_pred HcCCCEEEec
Confidence 9999988875
No 148
>2xzm_T RPS19E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_T
Probab=67.17 E-value=16 Score=31.62 Aligned_cols=72 Identities=14% Similarity=0.032 Sum_probs=48.8
Q ss_pred HHhccccCCCCHhhHHHHhCCC-------------hHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhccc
Q 012112 376 MLSFRTARGVDLKSFGETFGCS-------------LVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGN 442 (471)
Q Consensus 376 ~~~Lr~~~gi~~~~~~~~fg~~-------------~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~ 442 (471)
+..|-+..++-...+...||.. =.......|+.|++.|+++....+-. +-+.
T Consensus 65 ~R~lYlrg~vGV~~lrk~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~g~Vek~~~g~~---------------~k~G 129 (155)
T 2xzm_T 65 ARKVYLKPHTGISTLKHIFGSNKDRGNLRNKHQACHGKILRWALKSLEDLKIIRKDKNSAT---------------KKFS 129 (155)
T ss_dssp HHHHHHSTTCCHHHHHHHTCCEECCSSSCCEECCCCHHHHHHHHHHHHHTTSEEECSSCSS---------------STTC
T ss_pred HHHHhccCCCCHHHHHHHHCCCCCCCCCCCcccCCCcHHHHHHHHHHHHCCCEeecCCCCc---------------CCCC
Confidence 3344445678888888888742 13456788999999999986321100 0013
Q ss_pred ccceeeecCchhhchHHHHHHHHHh
Q 012112 443 RLAYFRLSDPEGFLLSNELISHAFG 467 (471)
Q Consensus 443 ~~~~~~lt~~~G~~~~n~i~~~~~~ 467 (471)
| +|| ++|+-..|.|..+++.
T Consensus 130 R----~lT-~~G~~~LDriA~~i~~ 149 (155)
T 2xzm_T 130 R----VIT-KEGMTELNRIATQIAI 149 (155)
T ss_dssp E----EEC-HHHHHHHHHHHHHHHH
T ss_pred C----EEC-HHHHHHHHHHHHHHHH
Confidence 4 786 9999999999988764
No 149
>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A
Probab=65.62 E-value=81 Score=29.77 Aligned_cols=120 Identities=13% Similarity=0.070 Sum_probs=73.3
Q ss_pred CCCCHHHHHHHH-HCCCC--EEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCC---CCCCHHHH
Q 012112 159 GTFDARKMEELM-DLGVN--RVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSL---PHQTPQMW 232 (471)
Q Consensus 159 ~~l~~e~l~~l~-~~Gvn--rvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl---PgqT~e~~ 232 (471)
..++++.++.|+ +.|+| |+.++.+... .+....-.+.+.++++.+.+.|+. |-+|+---- |..+.+.+
T Consensus 42 ~~~~~~~~~~l~~~~G~N~VRip~~~~~~~-----~~~~~~~~~~ld~~v~~a~~~Gi~-Vild~H~~~~~~~~~~~~~~ 115 (303)
T 7a3h_A 42 QFVNYESMKWLRDDWGINVFRAAMYTSSGG-----YIDDPSVKEKVKEAVEAAIDLDIY-VIIDWHILSDNDPNIYKEEA 115 (303)
T ss_dssp GGCSHHHHHHHHHHTCCCEEEEEEESSTTS-----TTTCTTHHHHHHHHHHHHHHHTCE-EEEEEECSSSCSTTTTHHHH
T ss_pred ccCCHHHHHHHHHhcCCCEEEEEEEeCCCC-----ccCCHHHHHHHHHHHHHHHHCCCE-EEEEecccCCCCchHHHHHH
Confidence 346888999998 78999 5666654211 000111356788899999999997 778875421 22345555
Q ss_pred HHHHHHHHh-C-CCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q 012112 233 EESLRRTVG-A-QPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 233 ~~~l~~~~~-l-~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
.+-.+.+.+ + +-++|- |.+.=||...-. .. .+.....++.+.+.+++.+-.+
T Consensus 116 ~~~w~~ia~r~~~~~~Vi-~el~NEP~~~~~------~w----~~~~~~~~~~~~~~IR~~dp~~ 169 (303)
T 7a3h_A 116 KDFFDEMSELYGDYPNVI-YEIANEPNGSDV------TW----GNQIKPYAEEVIPIIRNNDPNN 169 (303)
T ss_dssp HHHHHHHHHHHTTCTTEE-EECCSCCCSTTC------CT----TTTHHHHHHHHHHHHHTTCSSS
T ss_pred HHHHHHHHHHhCCCCeEE-EEeccCCCCCCc------Ch----HHHHHHHHHHHHHHHHhhCCCC
Confidence 555554443 2 223575 888888854210 00 1134567888888888887654
No 150
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=65.59 E-value=28 Score=26.80 Aligned_cols=44 Identities=9% Similarity=0.087 Sum_probs=34.9
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEec
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLD 419 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~ 419 (471)
.++.-|.. .++...++.+.+|.+-. .+...++.|.+.|++....
T Consensus 27 ~Il~~L~~-~~~~~~ela~~l~is~~-tvs~~L~~L~~~Glv~~~~ 70 (98)
T 3jth_A 27 QILCMLHN-QELSVGELCAKLQLSQS-ALSQHLAWLRRDGLVTTRK 70 (98)
T ss_dssp HHHHHTTT-SCEEHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHhc-CCCCHHHHHHHHCcCHH-HHHHHHHHHHHCCCeEEEE
Confidence 44455554 67899999999999864 5678899999999998654
No 151
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=65.16 E-value=78 Score=30.58 Aligned_cols=115 Identities=19% Similarity=0.219 Sum_probs=65.5
Q ss_pred eeEEEEcC--CCCCCC------C-HHHHHHH---HHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEE-EEcc
Q 012112 115 LETVFFGG--GTPSLV------P-PRFVSSI---LDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRV-SLGV 181 (471)
Q Consensus 115 v~~i~fGG--GTps~l------~-~~~l~~l---l~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gvnrv-siGv 181 (471)
.+-|-+|| ..|..- + .++++++ ++.|++.+ +..++|. +...+.++.--++|..-| ++.-
T Consensus 63 AdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~----~vpISID----T~~~~Va~aAl~aGa~iINDVsg 134 (314)
T 3tr9_A 63 ADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRF----PQLISVD----TSRPRVMREAVNTGADMINDQRA 134 (314)
T ss_dssp CSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHC----CSEEEEE----CSCHHHHHHHHHHTCCEEEETTT
T ss_pred CCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhC----CCeEEEe----CCCHHHHHHHHHcCCCEEEECCC
Confidence 56677887 234322 2 3455544 45555543 3456665 667888887777886544 3322
Q ss_pred CCCCHHHHHHc-----------CC--CCC-------------HHHHHHHHHHHHHcCCC--eeEeeeecC---CCCCCHH
Q 012112 182 QAFQDELLKSC-----------GR--AHG-------------LKEVYEAIEIVKLCGVE--NWSLDLISS---LPHQTPQ 230 (471)
Q Consensus 182 QS~~d~~L~~l-----------~R--~~t-------------~~~~~~ai~~~~~~G~~--~v~~DlI~G---lPgqT~e 230 (471)
.. +++++..+ .+ +.+ .+...+.++.+.++|++ +|-+|--+| + |.|.+
T Consensus 135 ~~-~~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~~ydvv~ev~~~l~~~i~~a~~~GI~~~~IilDPG~G~~~F-~Kt~~ 212 (314)
T 3tr9_A 135 LQ-LDDALTTVSALKTPVCLMHFPSETRKPGSTTHFYFLQSVKKELQESIQRCKKAGISEDRIIIDPGFGQGNY-GKNVS 212 (314)
T ss_dssp TC-STTHHHHHHHHTCCEEEECCCCTTCCTTSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCCSGGG-CCCHH
T ss_pred CC-chHHHHHHHHhCCeEEEECCCCCCcccccccccchHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCchhh-cCCHH
Confidence 23 44555532 11 112 34456677788888886 688888777 6 67766
Q ss_pred HHHHHHHHH
Q 012112 231 MWEESLRRT 239 (471)
Q Consensus 231 ~~~~~l~~~ 239 (471)
+=.+.|+.+
T Consensus 213 ~n~~lL~~l 221 (314)
T 3tr9_A 213 ENFYLLNKL 221 (314)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 544444433
No 152
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=64.71 E-value=20 Score=34.08 Aligned_cols=117 Identities=10% Similarity=0.017 Sum_probs=66.6
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC---CCCHHHHHHHHHHHHHcCCCeeEeeeecCCC-------CCCHHHH
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGR---AHGLKEVYEAIEIVKLCGVENWSLDLISSLP-------HQTPQMW 232 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R---~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlP-------gqT~e~~ 232 (471)
++.++.++++|++.|.+....-++.. ..+. ..+.+++.+..+.+++.|+.-+++..-+.+. .+..+.+
T Consensus 39 ~~~l~~aa~~G~~~VEl~~~~~~~~~--~~~~~p~~~~~~~~~~l~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~~ 116 (305)
T 3obe_A 39 PNGLNRLAKAGYTDLEIFGYREDTGK--FGDYNPKNTTFIASKDYKKMVDDAGLRISSSHLTPSLREYTKENMPKFDEFW 116 (305)
T ss_dssp HHHHHHHHHHTCCEEEECCBCTTTCC--BCCC----CCCBCHHHHHHHHHHTTCEEEEEBCCCSCCCCCGGGHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEeccccccccc--ccCcCcccccccCHHHHHHHHHHCCCeEEEeeccccccccchhhHHHHHHHH
Confidence 47888899999999998864211000 0000 0112245556677788898744443222111 1235678
Q ss_pred HHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 233 EESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 233 ~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
++.++.+.+++.++|.+. +.+- + .....-+...+.+..+.+..++.|..
T Consensus 117 ~~~i~~A~~lG~~~v~~~------~~~~------~-~~~~~~~~~~~~l~~l~~~a~~~Gv~ 165 (305)
T 3obe_A 117 KKATDIHAELGVSCMVQP------SLPR------I-ENEDDAKVVSEIFNRAGEITKKAGIL 165 (305)
T ss_dssp HHHHHHHHHHTCSEEEEC------CCCC------C-SSHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred HHHHHHHHHcCCCEEEeC------CCCC------C-CCHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 888999999999988752 2110 0 00001133456677777888888865
No 153
>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A*
Probab=64.48 E-value=25 Score=33.55 Aligned_cols=112 Identities=9% Similarity=0.158 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHCCCCEEEEccC-----------CCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCC--
Q 012112 160 TFDARKMEELMDLGVNRVSLGVQ-----------AFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPH-- 226 (471)
Q Consensus 160 ~l~~e~l~~l~~~GvnrvsiGvQ-----------S~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg-- 226 (471)
.++++.++.|+++|+|.|-+.+. ..+++. .+.+.++++.++++|+. |-+|+- +.++
T Consensus 41 ~~~~~d~~~l~~~G~n~vRi~i~w~~~~~~~~~~~~~~~~---------~~~~d~~v~~a~~~Gi~-vildlh-~~~~~~ 109 (320)
T 3nco_A 41 YIEDEYFKIIKERGFDSVRIPIRWSAHISEKYPYEIDKFF---------LDRVKHVVDVALKNDLV-VIINCH-HFEELY 109 (320)
T ss_dssp CCCHHHHHHHHHHTCCEEEECCCGGGSBCSSTTCCBCHHH---------HHHHHHHHHHHHHTTCE-EEEECC-CCHHHH
T ss_pred cCCHHHHHHHHHCCCCEEEEeeehHHhcCCCCCCccCHHH---------HHHHHHHHHHHHHCCCE-EEEEcC-CCcccc
Confidence 36899999999999997777642 112221 46678899999999997 777764 1221
Q ss_pred ----CCHHHHHHHHHHHHh-C--CCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q 012112 227 ----QTPQMWEESLRRTVG-A--QPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 227 ----qT~e~~~~~l~~~~~-l--~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
...+.+.+-.+.+.+ + .+..+ .|.+.=||... .+.+.....+..+.+.+++.+-.+
T Consensus 110 ~~~~~~~~~~~~~~~~ia~~~~~~~~vv-~~~l~NEP~~~------------~~~~~~~~~~~~~~~~IR~~dp~~ 172 (320)
T 3nco_A 110 QAPDKYGPVLVEIWKQVAQAFKDYPDKL-FFEIFNEPAQN------------LTPTKWNELYPKVLGEIRKTNPSR 172 (320)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHTTSCTTE-EEECCSCCCTT------------SCHHHHHHHHHHHHHHHHHHCSSC
T ss_pred cCcHHHHHHHHHHHHHHHHHHcCCCceE-EEEeccCCCCC------------CCHHHHHHHHHHHHHHHHhcCCCc
Confidence 123333333333332 2 24334 67777676432 134455667777777777765443
No 154
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=63.91 E-value=14 Score=33.74 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=42.3
Q ss_pred CCCH--hhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHH
Q 012112 384 GVDL--KSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNEL 461 (471)
Q Consensus 384 gi~~--~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i 461 (471)
|+.. .++++++|.+.. .+...+++|.++||+....+ ..++|| ++|..++..+
T Consensus 22 ~~~~~~~~la~~l~vs~~-tvs~~l~~Le~~GlV~r~~~------------------------~~v~LT-~~G~~~~~~~ 75 (226)
T 2qq9_A 22 GVTPLRARIAERLEQSGP-TVSQTVARMERDGLVVVASD------------------------RSLQMT-PTGRTLATAV 75 (226)
T ss_dssp TCCCBHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEECTT------------------------SBEEEC-HHHHHHHHHH
T ss_pred CCCccHHHHHHHHCCCHH-HHHHHHHHHHHCCCEEEeCC------------------------CCeEEC-HHHHHHHHHH
Confidence 5655 889999998854 46778999999999987432 148996 9999998877
Q ss_pred HH
Q 012112 462 IS 463 (471)
Q Consensus 462 ~~ 463 (471)
..
T Consensus 76 ~~ 77 (226)
T 2qq9_A 76 MR 77 (226)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 155
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=63.72 E-value=12 Score=30.57 Aligned_cols=45 Identities=11% Similarity=0.061 Sum_probs=35.5
Q ss_pred HHHHHhccccCCCCHhhHHHHh--CCChHHHHHHHHHHHHHCCCEEEe
Q 012112 373 DVLMLSFRTARGVDLKSFGETF--GCSLVHTLCKAYKPYIESGHVICL 418 (471)
Q Consensus 373 e~~~~~Lr~~~gi~~~~~~~~f--g~~~~~~~~~~~~~~~~~gll~~~ 418 (471)
+.|+.-|+....+...++++.+ |.+.. .+.+.++.|.+.|+|...
T Consensus 16 ~~IL~~L~~~g~~s~~eLA~~l~~giS~~-aVs~rL~~Le~~GLV~~~ 62 (111)
T 3b73_A 16 DRILEIIHEEGNGSPKELEDRDEIRISKS-SVSRRLKKLADHDLLQPL 62 (111)
T ss_dssp HHHHHHHHHHSCBCHHHHHTSTTCCSCHH-HHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhcCCCHH-HHHHHHHHHHHCCCEEec
Confidence 4555566665679999999999 87754 578899999999999864
No 156
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=62.93 E-value=41 Score=36.46 Aligned_cols=79 Identities=13% Similarity=0.043 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecC----CCC---CCHHHH
Q 012112 160 TFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISS----LPH---QTPQMW 232 (471)
Q Consensus 160 ~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~G----lPg---qT~e~~ 232 (471)
.+..+.++...++|++.|.+-. |.+ ..+.+..+++.+++.|.. +..++.+. -|. -+.+-+
T Consensus 197 ~~~~~~i~~a~~~Gvd~irIf~-s~n-----------~l~~l~~~i~~ak~~G~~-v~~~i~~~~d~~dp~r~~~~~e~~ 263 (718)
T 3bg3_A 197 NVVFKFCEVAKENGMDVFRVFD-SLN-----------YLPNMLLGMEAAGSAGGV-VEAAISYTGDVADPSRTKYSLQYY 263 (718)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEC-SSC-----------CHHHHHHHHHHHHTTTSE-EEEEEECCSCTTCTTCCTTCHHHH
T ss_pred cchHHHHHHHHhcCcCEEEEEe-cHH-----------HHHHHHHHHHHHHHcCCe-EEEEEEeeccccCCCCCCCCHHHH
Confidence 3346788889999999887764 333 356888899999999965 77777665 343 278889
Q ss_pred HHHHHHHHhCCCCcEEEEe
Q 012112 233 EESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 233 ~~~l~~~~~l~p~his~y~ 251 (471)
.+.++.+.+++++.|.+-.
T Consensus 264 ~~~a~~l~~~Ga~~I~l~D 282 (718)
T 3bg3_A 264 MGLAEELVRAGTHILCIKD 282 (718)
T ss_dssp HHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEcC
Confidence 9999999999998776543
No 157
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=62.72 E-value=19 Score=27.16 Aligned_cols=52 Identities=8% Similarity=0.072 Sum_probs=37.7
Q ss_pred hhHHHHHHHHhcccc--CCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecC
Q 012112 368 KDLAMDVLMLSFRTA--RGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDE 420 (471)
Q Consensus 368 ~~~~~e~~~~~Lr~~--~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~ 420 (471)
.+.+.+++-..+... ..+...++++.||.+. .....-|..|++.|+|....+
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~-~TVrr~L~~Le~kG~I~R~~g 59 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGLSI-YQVRLYLEQLHDVGVLEKVNA 59 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCH-HHHHHHHHHHHHTTSEEEESC
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCH-HHHHHHHHHHHHCCcEEecCC
Confidence 344555554443332 5688999999999984 457788999999999987654
No 158
>1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A
Probab=61.93 E-value=14 Score=35.57 Aligned_cols=117 Identities=13% Similarity=0.187 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHCCCCEEEEcc--CCCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCCCeeEeeeecCCCC-C--------
Q 012112 161 FDARKMEELMDLGVNRVSLGV--QAFQDELLKSCGRA--HGLKEVYEAIEIVKLCGVENWSLDLISSLPH-Q-------- 227 (471)
Q Consensus 161 l~~e~l~~l~~~GvnrvsiGv--QS~~d~~L~~l~R~--~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg-q-------- 227 (471)
++++.++.|++.|+|-|-+.+ +.+.+.- .-+.. ...+.+.++|+.+++.|+. |-+|+-.. || +
T Consensus 29 ~~~~d~~~i~~~G~n~vRi~i~~~~~~~~~--~~g~~~~~~~~~l~~~v~~a~~~Gi~-vildlh~~-~g~~~~~~~~~~ 104 (343)
T 1ceo_A 29 ITEKDIETIAEAGFDHVRLPFDYPIIESDD--NVGEYKEDGLSYIDRCLEWCKKYNLG-LVLDMHHA-PGYRFQDFKTST 104 (343)
T ss_dssp SCHHHHHHHHHHTCCEEEEEEEGGGTBCSS--STTCBCHHHHHHHHHHHHHHHHTTCE-EEEEEEEC-CC--------CC
T ss_pred cCHHHHHHHHHcCCCEEEecCCHHHhcccc--CCCcccHHHHHHHHHHHHHHHHCCCE-EEEEecCC-CccccCCCCccc
Confidence 679999999999999554443 3322110 00010 1245678899999999997 88887653 33 1
Q ss_pred ---C---HHHHHHHHHHHHh-CC-CCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 228 ---T---PQMWEESLRRTVG-AQ-PKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 228 ---T---~e~~~~~l~~~~~-l~-p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
+ .+.+.+-++.+.+ ++ -+.+-.|.+.-||... +.+.....+..+.+.+++.+-.
T Consensus 105 ~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~~el~NEP~~~-------------~~~~~~~~~~~~~~~IR~~~p~ 166 (343)
T 1ceo_A 105 LFEDPNQQKRFVDIWRFLAKRYINEREHIAFELLNQVVEP-------------DSTRWNKLMLECIKAIREIDST 166 (343)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTTTCCSSEEEECCSCCCCS-------------SSHHHHHHHHHHHHHHHHHCSS
T ss_pred CcCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEeccCCCCc-------------chHHHHHHHHHHHHHHHhhCCC
Confidence 1 2334444444432 32 1234578887777542 1234455666777777766544
No 159
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=61.67 E-value=20 Score=28.36 Aligned_cols=65 Identities=8% Similarity=-0.002 Sum_probs=46.0
Q ss_pred HHHHHhccccCCCCHhhHHH-HhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecC
Q 012112 373 DVLMLSFRTARGVDLKSFGE-TFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSD 451 (471)
Q Consensus 373 e~~~~~Lr~~~gi~~~~~~~-~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~ 451 (471)
-.++..|.....+...++.+ ..+.+-. .+...++.|+++||++ .+++. +.||
T Consensus 19 fsiL~~L~~~~~~t~~~Lae~~l~~drs-tvsrnl~~L~r~GlVe-~~~~D------------------------l~LT- 71 (95)
T 1bja_A 19 ATILITIAKKDFITAAEVREVHPDLGNA-VVNSNIGVLIKKGLVE-KSGDG------------------------LIIT- 71 (95)
T ss_dssp HHHHHHHHHSTTBCHHHHHHTCTTSCHH-HHHHHHHHHHTTTSEE-EETTE------------------------EEEC-
T ss_pred HHHHHHHHHCCCCCHHHHHHHHhcccHH-HHHHHHHHHHHCCCee-cCCCC------------------------eeeC-
Confidence 34555565566788888888 7666643 4677899999999998 43321 6886
Q ss_pred chhhchHHHHHHH
Q 012112 452 PEGFLLSNELISH 464 (471)
Q Consensus 452 ~~G~~~~n~i~~~ 464 (471)
++|..+.......
T Consensus 72 ~~G~~~l~~a~~~ 84 (95)
T 1bja_A 72 GEAQDIISNAATL 84 (95)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHH
Confidence 9999887765443
No 160
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=61.66 E-value=50 Score=32.20 Aligned_cols=79 Identities=16% Similarity=0.130 Sum_probs=49.4
Q ss_pred CHHHHHHHHHC-CCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCC------------C
Q 012112 162 DARKMEELMDL-GVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQ------------T 228 (471)
Q Consensus 162 ~~e~l~~l~~~-GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgq------------T 228 (471)
+++.|+.++++ |++.|.+.+-... .+...+.+++.+..+.+.++|+. +++ +..+|.. .
T Consensus 23 ~~~~L~~i~~~~G~~~ve~~~~~~~------~g~~~~~~~~~~~~~~l~~~GL~-i~~--~~~~~~~~~~~~~~~~r~~~ 93 (367)
T 1tz9_A 23 DAIPLKHIRQIPGITGVVGTLLNKL------PGDVWTVAEIQALKQSVEQEGLA-LLG--IESVAIHDAIKAGTDQRDHY 93 (367)
T ss_dssp CCSCHHHHTTSTTCCEEEECCSSSC------TTCCCCHHHHHHHHHHHHHTTCE-EEE--ECSCCCCHHHHHTCSTHHHH
T ss_pred ChHHHHHHhhcCCCCeEEecCCCCC------CCCCCCHHHHHHHHHHHHHCCCe-EEE--EecCCCcHHHhcCCcCHHHH
Confidence 45668888888 8888877653211 12233556677777777888886 443 4444421 2
Q ss_pred HHHHHHHHHHHHhCCCCcEEE
Q 012112 229 PQMWEESLRRTVGAQPKHVSV 249 (471)
Q Consensus 229 ~e~~~~~l~~~~~l~p~his~ 249 (471)
.+.+++.++.+.+++.+.|.+
T Consensus 94 i~~~~~~i~~a~~lG~~~v~~ 114 (367)
T 1tz9_A 94 IDNYRQTLRNLGKCGISLVCY 114 (367)
T ss_dssp HHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEE
Confidence 455677777788888887654
No 161
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=61.02 E-value=54 Score=30.92 Aligned_cols=110 Identities=12% Similarity=0.132 Sum_probs=67.4
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeec-----CCCCC----------
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLIS-----SLPHQ---------- 227 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~-----GlPgq---------- 227 (471)
++.++.++++|++.|.+....... . -..+ ..+..+.++++|+.-+++..-+ .-|.+
T Consensus 32 ~~~l~~~a~~G~~~VEl~~~~~~~-----~-~~~~---~~~~~~~l~~~GL~v~~~~~~~~~~~~~~p~~~~~~~~~~~~ 102 (303)
T 3l23_A 32 AANLRKVKDMGYSKLELAGYGKGA-----I-GGVP---MMDFKKMAEDAGLKIISSHVNPVDTSISDPFKAMIFKYSKEV 102 (303)
T ss_dssp HHHHHHHHHTTCCEEEECCEETTE-----E-TTEE---HHHHHHHHHHTTCEEEEEECCCBCTTCSSTTTTBCCSCCTTT
T ss_pred HHHHHHHHHcCCCEEEeccccCcc-----c-CCCC---HHHHHHHHHHcCCeEEEEecccccccccCcccccccccchhh
Confidence 589999999999999987532100 0 0123 3444566778898744443322 12332
Q ss_pred ---CHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 228 ---TPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 228 ---T~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
..+.+++.++.+.+++.+.|.+... .. . .....-+...+.+..+.+..++.|..
T Consensus 103 ~~~~~~~~~~~i~~A~~lG~~~v~~~~~-~~-----------~-~~~~~~~~~~~~l~~l~~~a~~~Gv~ 159 (303)
T 3l23_A 103 TPKIMEYWKATAADHAKLGCKYLIQPMM-PT-----------I-TTHDEAKLVCDIFNQASDVIKAEGIA 159 (303)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEECSC-CC-----------C-CSHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCC-CC-----------C-CCHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 3567888999999999998876321 10 0 00011234456777888888898975
No 162
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=60.77 E-value=49 Score=30.34 Aligned_cols=111 Identities=11% Similarity=0.072 Sum_probs=65.0
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecC-----------CCC---CC
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISS-----------LPH---QT 228 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~G-----------lPg---qT 228 (471)
++.++.++++|++.|.+.... ..+ ..+..+.+++.|+.-+++..-++ -|. ++
T Consensus 26 ~~~l~~~~~~G~~~vEl~~~~-----------~~~---~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 91 (269)
T 3ngf_A 26 LERFRLAAEAGFGGVEFLFPY-----------DFD---ADVIARELKQHNLTQVLFNMPPGDWAAGERGMAAISGREQEF 91 (269)
T ss_dssp HHHHHHHHHTTCSEEECSCCT-----------TSC---HHHHHHHHHHTTCEEEEEECCCSCTTTTCCBCTTCTTCHHHH
T ss_pred HHHHHHHHHcCCCEEEecCCc-----------cCC---HHHHHHHHHHcCCcEEEEecCCCccccCCCCcCCCccHHHHH
Confidence 588999999999998886521 122 44555677888987433332221 121 13
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc-eecc
Q 012112 229 PQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR-HYEI 298 (471)
Q Consensus 229 ~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~-~yei 298 (471)
.+.+++.++.+.+++++.|.+.+ |.+- +.......+...+.+..+.+..++.|.. -+|.
T Consensus 92 ~~~~~~~i~~A~~lGa~~v~~~~-----g~~~------~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 151 (269)
T 3ngf_A 92 RDNVDIALHYALALDCRTLHAMS-----GITE------GLDRKACEETFIENFRYAADKLAPHGITVLVEP 151 (269)
T ss_dssp HHHHHHHHHHHHHTTCCEEECCB-----CBCT------TSCHHHHHHHHHHHHHHHHHHHGGGTCEEEECC
T ss_pred HHHHHHHHHHHHHcCCCEEEEcc-----CCCC------CCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 46788889999999999886643 3110 0000001133455566677777777765 3443
No 163
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=60.61 E-value=55 Score=31.91 Aligned_cols=119 Identities=8% Similarity=0.074 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecC--CCCCHHHHHHHH
Q 012112 93 NYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDP--GTFDARKMEELM 170 (471)
Q Consensus 93 ~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P--~~l~~e~l~~l~ 170 (471)
.|+..+.+++... +++.|++.| |-..+.|..+.++++.+++.++ ++..+.+-++= +.-....+..+
T Consensus 149 e~~~~ia~~~~~~--------Ga~~i~l~D-T~G~~~P~~v~~lv~~l~~~~~--~~~pi~~H~Hn~~G~avAn~laA~- 216 (345)
T 1nvm_A 149 EKLAEQGKLMESY--------GATCIYMAD-SGGAMSMNDIRDRMRAFKAVLK--PETQVGMHAHHNLSLGVANSIVAV- 216 (345)
T ss_dssp HHHHHHHHHHHHH--------TCSEEEEEC-TTCCCCHHHHHHHHHHHHHHSC--TTSEEEEECBCTTSCHHHHHHHHH-
T ss_pred HHHHHHHHHHHHC--------CCCEEEECC-CcCccCHHHHHHHHHHHHHhcC--CCceEEEEECCCccHHHHHHHHHH-
Confidence 5666666666544 156788864 6677789999999999999874 34567776642 22234445444
Q ss_pred HCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHh
Q 012112 171 DLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVG 241 (471)
Q Consensus 171 ~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~ 241 (471)
++|+++|.-.+-.+- .....-.....+..++..|++ +|-..+.+.+..+.+.+
T Consensus 217 ~aGa~~vd~tv~GlG--------~~aGN~~le~lv~~L~~~g~~----------~~idl~~l~~~~~~~~~ 269 (345)
T 1nvm_A 217 EEGCDRVDASLAGMG--------AGAGNAPLEVFIAVAERLGWN----------HGTDLYTLMDAADDIVR 269 (345)
T ss_dssp HTTCCEEEEBGGGCS--------STTCBCBHHHHHHHHHHHTCB----------CCSCHHHHHHHHHHTTG
T ss_pred HcCCCEEEecchhcc--------CCccCcCHHHHHHHHHhcCCC----------CCCCHHHHHHHHHHHHH
Confidence 689999987766644 322222233444445556665 23345666655555543
No 164
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=60.53 E-value=88 Score=30.27 Aligned_cols=62 Identities=10% Similarity=0.062 Sum_probs=36.6
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHH-HHHHHHcC-CCC-----CcEEEEEecCCCCCHHHHHHHHHCCCCEEEE
Q 012112 115 LETVFFGGGTPSLVPPRFVSSIL-DTLTDKFG-LSL-----DAEISMEMDPGTFDARKMEELMDLGVNRVSL 179 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll-~~l~~~~~-l~~-----~~eitiE~~P~~l~~e~l~~l~~~Gvnrvsi 179 (471)
++.|++.+...++++++.++++. ..+++.+. +.. +..+..- .+.. ...+..|.+.|++-+++
T Consensus 201 ad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~~~ii~~--~~g~-~~~l~~l~~~g~d~i~~ 269 (354)
T 3cyv_A 201 AQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLF--TKGG-GQWLEAMAETGCDALGL 269 (354)
T ss_dssp CSEEEEECTTGGGSCHHHHHHHTHHHHHHHHHHSCSEETTEECCEEEE--CTTT-TTTHHHHHTTSCSEEEC
T ss_pred CCEEEEeCCccccCCHHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEE--CCCH-HHHHHHHHhcCCCEEEe
Confidence 56677766666789998776653 33333321 111 1222222 2322 56788999999999885
No 165
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=60.39 E-value=1.1e+02 Score=28.73 Aligned_cols=116 Identities=17% Similarity=0.269 Sum_probs=70.4
Q ss_pred eeEEEEcCC-----CCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEE-EccCCCCHHH
Q 012112 115 LETVFFGGG-----TPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVS-LGVQAFQDEL 188 (471)
Q Consensus 115 v~~i~fGGG-----Tps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gvnrvs-iGvQS~~d~~ 188 (471)
.+-|-+||- ...+-..+++.+++-.|+..-. .++.+++. |...+.++.--++|++-|. +.--.+|+++
T Consensus 44 AdiIDIGgeSTRPga~~vs~eeE~~Rv~pvi~~l~~--~~v~iSID----T~~~~Va~~al~aGa~iINDVs~g~~d~~m 117 (270)
T 4hb7_A 44 ADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVG--FDVKISVD----TFRSEVAEACLKLGVDMINDQWAGLYDHRM 117 (270)
T ss_dssp CSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTT--SSSEEEEE----CSCHHHHHHHHHHTCCEEEETTTTSSCTHH
T ss_pred CCEEEECCccCCCCCCCCchHHHHHHHHHHHHHhhc--CCCeEEEE----CCCHHHHHHHHHhccceeccccccccchhH
Confidence 566778873 2233234678888777766533 35667765 5567777777777766554 3223456666
Q ss_pred HHHcCC-----------C--C--C-----HHHHHHHHHHHHHcCCC--eeEeeeecCCCCCCHHHHHHHHH
Q 012112 189 LKSCGR-----------A--H--G-----LKEVYEAIEIVKLCGVE--NWSLDLISSLPHQTPQMWEESLR 237 (471)
Q Consensus 189 L~~l~R-----------~--~--t-----~~~~~~ai~~~~~~G~~--~v~~DlI~GlPgqT~e~~~~~l~ 237 (471)
++.+.+ + . + ...+.+.++.+.++|+. +|-+|-=+|+ |-|.++=.+.|+
T Consensus 118 ~~~va~~~~~~vlMH~~~~p~~~~vv~ev~~~l~~~i~~a~~aGI~~~~IilDPGiGF-gKt~~~N~~ll~ 187 (270)
T 4hb7_A 118 FQIVAKYDAEIILMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGF-AKTRNEEAEVMA 187 (270)
T ss_dssp HHHHHHTTCEEEEECCCSSCCSSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTS-SCCHHHHHHHHT
T ss_pred HHHHHHcCCCeEEeccccCCccccchhHHHHHHHHHHHHHHHcCCCCceEEEeCCCCc-ccccccHHHHHh
Confidence 654311 1 1 1 23344556788889994 6889999999 777765444433
No 166
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=60.01 E-value=38 Score=32.36 Aligned_cols=83 Identities=12% Similarity=0.140 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec--CCCCCHHHHHHHH
Q 012112 93 NYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMD--PGTFDARKMEELM 170 (471)
Q Consensus 93 ~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~--P~~l~~e~l~~l~ 170 (471)
.|+..+.+.+... +++.|.+.+ |-..+.|.++.++++.+++.++-.+...+.+-++ .+.-....+..+
T Consensus 150 ~~~~~~~~~~~~~--------G~~~i~l~D-T~G~~~P~~v~~lv~~l~~~~~~~~~~~l~~H~Hnd~Gla~AN~laA~- 219 (293)
T 3ewb_X 150 AFLIEAVQTAIDA--------GATVINIPD-TVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANALAAI- 219 (293)
T ss_dssp HHHHHHHHHHHHT--------TCCEEEEEC-SSSCCCHHHHHHHHHHHHHHCTTGGGSEEEEECBCTTSCHHHHHHHHH-
T ss_pred HHHHHHHHHHHHc--------CCCEEEecC-CCCCCCHHHHHHHHHHHHHhcCCccCceEEEEeCCCcChHHHHHHHHH-
Confidence 4555555555433 257788864 7788899999999999999875222245666653 222244555555
Q ss_pred HCCCCEEEEccCCCC
Q 012112 171 DLGVNRVSLGVQAFQ 185 (471)
Q Consensus 171 ~~GvnrvsiGvQS~~ 185 (471)
++|+++|.-.+-.+-
T Consensus 220 ~aGa~~vd~sv~GlG 234 (293)
T 3ewb_X 220 ENGARRVEGTINGIG 234 (293)
T ss_dssp HTTCCEEEEBGGGCC
T ss_pred HhCCCEEEeeccccc
Confidence 589999987766654
No 167
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=59.89 E-value=24 Score=32.38 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=65.7
Q ss_pred eeEEEEcCCCC--CC-CCHHHHHHHHHHHHHHcCCCCCcEEEEEe-cCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHH
Q 012112 115 LETVFFGGGTP--SL-VPPRFVSSILDTLTDKFGLSLDAEISMEM-DPGTFDARKMEELMDLGVNRVSLGVQAFQDELLK 190 (471)
Q Consensus 115 v~~i~fGGGTp--s~-l~~~~l~~ll~~l~~~~~l~~~~eitiE~-~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~ 190 (471)
.-.+-+.+|.+ ++ +.++ +++.|++.++......+.+-+ +| .+.++.+.++|++.|++..++.+
T Consensus 33 ~~h~DVmDg~Fvpn~~~G~~----~v~~ir~~~~~~~~~dvhLmv~~p----~~~i~~~~~aGad~itvH~Ea~~----- 99 (228)
T 3ovp_A 33 YLHLDVMDGHFVPNITFGHP----VVESLRKQLGQDPFFDMHMMVSKP----EQWVKPMAVAGANQYTFHLEATE----- 99 (228)
T ss_dssp CEEEEEEBSSSSSCBCBCHH----HHHHHHHHHCSSSCEEEEEECSCG----GGGHHHHHHHTCSEEEEEGGGCS-----
T ss_pred EEEEEecCCCcCcccccCHH----HHHHHHHhhCCCCcEEEEEEeCCH----HHHHHHHHHcCCCEEEEccCCch-----
Confidence 44566677764 22 3454 455556654111122333443 44 35788899999999999988753
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCC
Q 012112 191 SCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGT 258 (471)
Q Consensus 191 ~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT 258 (471)
+..+.++.++++|.+ +.+.+--+.|- +.++ .+.. .+|.| +-.++.||.
T Consensus 100 ---------~~~~~i~~i~~~G~k-~gval~p~t~~---e~l~----~~l~-~~D~V--l~msv~pGf 147 (228)
T 3ovp_A 100 ---------NPGALIKDIRENGMK-VGLAIKPGTSV---EYLA----PWAN-QIDMA--LVMTVEPGF 147 (228)
T ss_dssp ---------CHHHHHHHHHHTTCE-EEEEECTTSCG---GGTG----GGGG-GCSEE--EEESSCTTT
T ss_pred ---------hHHHHHHHHHHcCCC-EEEEEcCCCCH---HHHH----HHhc-cCCeE--EEeeecCCC
Confidence 245778888999987 77766544443 3222 2222 25654 445677875
No 168
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=59.70 E-value=26 Score=26.12 Aligned_cols=43 Identities=9% Similarity=-0.009 Sum_probs=33.2
Q ss_pred HHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEe
Q 012112 375 LMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICL 418 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~ 418 (471)
|+..|....++...++++.+|.+.. .....++.|++.|++...
T Consensus 5 Il~~L~~~~~~s~~eLa~~lgvs~~-tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 5 ILEFLNRHNGGKTAEIAEALAVTDY-QARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHSCCCCHHHHHHHHTSCHH-HHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHH-HHHHHHHHHHHCCCEEEe
Confidence 3334444467999999999999864 467789999999999853
No 169
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=59.22 E-value=19 Score=36.25 Aligned_cols=132 Identities=13% Similarity=0.091 Sum_probs=75.7
Q ss_pred CHHHHHHHHHCCCCEEEEccCCCCHHHHHH--c-CCCCCHHHHHHHHHHHHHcCCCeeEeeeecC----CCCC-------
Q 012112 162 DARKMEELMDLGVNRVSLGVQAFQDELLKS--C-GRAHGLKEVYEAIEIVKLCGVENWSLDLISS----LPHQ------- 227 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~--l-~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~G----lPgq------- 227 (471)
..+.++.|+++|+|.|-+.+ -.++.--.- . .-..+.+.+.++++.++++|++ |-+||-|+ =|+.
T Consensus 50 ~~d~~~ilk~~G~N~VRlrv-wv~p~~~~g~~y~~g~~d~~~~~~~a~~Ak~~GLk-VlldfHysD~WadPg~Q~~P~aW 127 (399)
T 1ur4_A 50 KQDIFKTLKEAGVNYVRVRI-WNDPYDANGNGYGGGNNDLEKAIQIGKRATANGMK-LLADFHYSDFWADPAKQKAPKAW 127 (399)
T ss_dssp BCCHHHHHHHTTCCEEEEEE-CSCCBCTTCCBCSTTCCCHHHHHHHHHHHHHTTCE-EEEEECSSSSCCSSSCCCCCGGG
T ss_pred cchHHHHHHHCCCCEEEEee-ecCCcccccCccCCCCCCHHHHHHHHHHHHHCCCE-EEEEeccCCccCCcccccCcccc
Confidence 45779999999999888765 222210000 0 0115688999999999999998 99998764 2442
Q ss_pred ---CHHHHH--------HHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCcee
Q 012112 228 ---TPQMWE--------ESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRHY 296 (471)
Q Consensus 228 ---T~e~~~--------~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~y 296 (471)
+.+++. ..++.+.+.+.. +.++..--|. .. |-......+..++++..+.+..++..-..-
T Consensus 128 ~~~~~~~l~~~~~~yt~~~l~~l~~~g~~-~~~vqvGNEi----~~----g~~~~~~~~~la~ll~ag~~aVR~v~p~~~ 198 (399)
T 1ur4_A 128 ANLNFEDKKTALYQYTKQSLKAMKAAGID-IGMVQVGNET----NG----GLAGETDWAKMSQLFNAGSQAVRETDSNIL 198 (399)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEESSSC----SS----CBTTBCCHHHHHHHHHHHHHHHHHHCTTSE
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhcCCC-CcEEEEcccc----cc----ccCCcccHHHHHHHHHHHHHHHHHhCCCCe
Confidence 444333 233344443332 3333332222 11 111123456777888888888887764432
Q ss_pred ccccccCC
Q 012112 297 EISSYGED 304 (471)
Q Consensus 297 eis~fa~~ 304 (471)
-+.+.+.+
T Consensus 199 V~ih~~~~ 206 (399)
T 1ur4_A 199 VALHFTNP 206 (399)
T ss_dssp EEEEECCT
T ss_pred EEEEeCCC
Confidence 23445544
No 170
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=59.12 E-value=45 Score=31.05 Aligned_cols=135 Identities=15% Similarity=0.144 Sum_probs=79.5
Q ss_pred eeEEEEcCCCC--CC-CCHHHHHHHHHHHHHHc-CCCCCcEEEEEe-cCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHH
Q 012112 115 LETVFFGGGTP--SL-VPPRFVSSILDTLTDKF-GLSLDAEISMEM-DPGTFDARKMEELMDLGVNRVSLGVQAFQDELL 189 (471)
Q Consensus 115 v~~i~fGGGTp--s~-l~~~~l~~ll~~l~~~~-~l~~~~eitiE~-~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L 189 (471)
.-.+-+.+|.+ ++ +.+ .+++.|++.+ ... ..+.+.+ +| .+.++.+.++|++.|++..++.+
T Consensus 56 ~lHvDVmDg~FVpnit~G~----~~v~~lr~~~p~~~--ldvHLmv~~p----~~~i~~~~~aGAd~itvH~Ea~~---- 121 (246)
T 3inp_A 56 NIHFDVMDNHYVPNLTFGP----MVLKALRDYGITAG--MDVHLMVKPV----DALIESFAKAGATSIVFHPEASE---- 121 (246)
T ss_dssp CEEEEEEBSSSSSCBCCCH----HHHHHHHHHTCCSC--EEEEEECSSC----HHHHHHHHHHTCSEEEECGGGCS----
T ss_pred EEEEEecCCCcCcchhcCH----HHHHHHHHhCCCCe--EEEEEeeCCH----HHHHHHHHHcCCCEEEEccccch----
Confidence 34555677763 22 344 4456666665 322 2343443 44 56899999999999999999853
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCC
Q 012112 190 KSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEF 269 (471)
Q Consensus 190 ~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~ 269 (471)
++.++++.+|++|.+ +.+.+--+-|-+..+.+ ++ .+|.|- -.++.||.. |+.
T Consensus 122 ----------~~~~~i~~ir~~G~k-~Gvalnp~Tp~e~l~~~-------l~-~vD~Vl--vMsV~PGfg-------GQ~ 173 (246)
T 3inp_A 122 ----------HIDRSLQLIKSFGIQ-AGLALNPATGIDCLKYV-------ES-NIDRVL--IMSVNPGFG-------GQK 173 (246)
T ss_dssp ----------CHHHHHHHHHTTTSE-EEEEECTTCCSGGGTTT-------GG-GCSEEE--EECSCTTC---------CC
T ss_pred ----------hHHHHHHHHHHcCCe-EEEEecCCCCHHHHHHH-------Hh-cCCEEE--EeeecCCCC-------Ccc
Confidence 256788888999997 77877655555433322 22 366554 346788863 221
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 270 PLPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 270 ~~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
-.|.. .+-....++.+.+.|+.
T Consensus 174 fi~~~---l~KI~~lr~~~~~~~~~ 195 (246)
T 3inp_A 174 FIPAM---LDKAKEISKWISSTDRD 195 (246)
T ss_dssp CCTTH---HHHHHHHHHHHHHHTSC
T ss_pred cchHH---HHHHHHHHHHHHhcCCC
Confidence 12332 22344455666666764
No 171
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=59.04 E-value=58 Score=31.66 Aligned_cols=66 Identities=17% Similarity=0.286 Sum_probs=47.8
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec--CCCCCHHHHHHHHHCCCCEEEEccCCCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMD--PGTFDARKMEELMDLGVNRVSLGVQAFQ 185 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~--P~~l~~e~l~~l~~~GvnrvsiGvQS~~ 185 (471)
++.|++.+ |-.++.|.++.++++.+++.++ +..+.+-++ -+.-....+..+ ++|+++|.-.+=.+-
T Consensus 183 a~~i~l~D-T~G~~~P~~v~~lv~~l~~~~p---~~~i~~H~Hnd~GlA~AN~laAv-~aGa~~vd~tv~GlG 250 (337)
T 3ble_A 183 IERIFLPD-TLGVLSPEETFQGVDSLIQKYP---DIHFEFHGHNDYDLSVANSLQAI-RAGVKGLHASINGLG 250 (337)
T ss_dssp CSEEEEEC-TTCCCCHHHHHHHHHHHHHHCT---TSCEEEECBCTTSCHHHHHHHHH-HTTCSEEEEBGGGCS
T ss_pred CCEEEEec-CCCCcCHHHHHHHHHHHHHhcC---CCeEEEEecCCcchHHHHHHHHH-HhCCCEEEEeccccc
Confidence 67888874 7788899999999999999873 345666663 333355666666 569999987665543
No 172
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=58.82 E-value=19 Score=27.25 Aligned_cols=45 Identities=4% Similarity=0.012 Sum_probs=36.5
Q ss_pred HHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEe
Q 012112 373 DVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICL 418 (471)
Q Consensus 373 e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~ 418 (471)
+.|..-|+....++.+++.+.|+.+.. .+..-|+.|++.|++...
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS~~-TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTPQP-MINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCCHH-HHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHH-HHHHHHHHHHHCCCEEEe
Confidence 344555566677999999999999964 577889999999999877
No 173
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=58.59 E-value=83 Score=30.44 Aligned_cols=118 Identities=15% Similarity=0.157 Sum_probs=63.7
Q ss_pred eeEEEEcCCC--C--CCCCHHHHHHH---HHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEE-EEccCCCCH
Q 012112 115 LETVFFGGGT--P--SLVPPRFVSSI---LDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRV-SLGVQAFQD 186 (471)
Q Consensus 115 v~~i~fGGGT--p--s~l~~~~l~~l---l~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gvnrv-siGvQS~~d 186 (471)
.+-|-+||.. | .+-..++++++ ++.|++.+ ++..++|. +...+.++.--++|..-| ++.-.. ++
T Consensus 79 AdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~---~~vpISID----T~~~~VaeaAl~aGa~iINDVsg~~-d~ 150 (318)
T 2vp8_A 79 ADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAY---PDQLISVD----TWRAQVAKAACAAGADLINDTWGGV-DP 150 (318)
T ss_dssp CSEEEEC----------CHHHHHHHHHHHHHHHHHHS---TTCEEEEE----CSCHHHHHHHHHHTCCEEEETTSSS-ST
T ss_pred CCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhC---CCCeEEEe----CCCHHHHHHHHHhCCCEEEECCCCC-ch
Confidence 5677788732 2 23235677777 45555543 13456665 566777777666775533 222222 55
Q ss_pred HHHHHc----------C-CCC---C------------------HHHHHHHHHHHHHcCCC--eeEeeeecCCCCCCHHHH
Q 012112 187 ELLKSC----------G-RAH---G------------------LKEVYEAIEIVKLCGVE--NWSLDLISSLPHQTPQMW 232 (471)
Q Consensus 187 ~~L~~l----------~-R~~---t------------------~~~~~~ai~~~~~~G~~--~v~~DlI~GlPgqT~e~~ 232 (471)
+++..+ . |+. + .+...+.++.+.++|++ +|-+|--+|+ +-|.++-
T Consensus 151 ~m~~vaa~~g~~vVlmh~~G~~p~tmq~~~~y~~~~~dv~~ev~~~l~~~i~~a~~aGI~~~~IilDPG~GF-~Kt~~~n 229 (318)
T 2vp8_A 151 AMPEVAAEFGAGLVCAHTGGALPRTRPFRVSYGTTTRGVVDAVISQVTAAAERAVAAGVAREKVLIDPAHDF-GKNTFHG 229 (318)
T ss_dssp THHHHHHHHTCEEEEECC-------------CCSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEETTTTC-CTTSHHH
T ss_pred HHHHHHHHhCCCEEEECCCCCCccccccccccccccccHHHHHHHHHHHHHHHHHHcCCChhhEEEcCCCCc-ccCHHHH
Confidence 555431 1 211 1 13345567788888997 6889998888 5555554
Q ss_pred HHHHHHHHh
Q 012112 233 EESLRRTVG 241 (471)
Q Consensus 233 ~~~l~~~~~ 241 (471)
.+.|+.+.+
T Consensus 230 l~ll~~l~~ 238 (318)
T 2vp8_A 230 LLLLRHVAD 238 (318)
T ss_dssp HHHHHTHHH
T ss_pred HHHHHHHHH
Confidence 445554443
No 174
>2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum}
Probab=58.49 E-value=33 Score=35.22 Aligned_cols=129 Identities=12% Similarity=0.121 Sum_probs=79.0
Q ss_pred CCHHHHHHHHHCCCCEEEEccCCCCHHHHH--HcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCC--CCCCHHHHHHHH
Q 012112 161 FDARKMEELMDLGVNRVSLGVQAFQDELLK--SCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSL--PHQTPQMWEESL 236 (471)
Q Consensus 161 l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~--~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl--PgqT~e~~~~~l 236 (471)
.+++.++.++++|+|-|-|.+...+..... ........+.+.++|+.+.+.|+. |-+|+=-+- |..+.+.+.+-+
T Consensus 40 ~~~~d~~~i~~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~vv~~a~~~Gl~-VIlD~H~~~~~~~~~~~~~~~~w 118 (491)
T 2y8k_A 40 APYDQIARVKELGFNAVHLYAECFDPRYPAPGSKAPGYAVNEIDKIVERTRELGLY-LVITIGNGANNGNHNAQWARDFW 118 (491)
T ss_dssp CCHHHHGGGGGGTCCEEEEEEEECCTTTTSTTCCCTTTTHHHHHHHHHHHHHHTCE-EEEEEECTTCTTCCCHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEECceeecccccCCCccChhHHHHHHHHHHHHHHHCCCE-EEEECCCCCCCccccHHHHHHHH
Confidence 467889999999999888877533211000 112223478899999999999997 888876542 335677777777
Q ss_pred HHHHh-C-CCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q 012112 237 RRTVG-A-QPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 237 ~~~~~-l-~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
+.+.+ + +-++|- |.+.=||...- ....... ...+...++++.+.+.+++.+-.+
T Consensus 119 ~~iA~ryk~~p~Vi-~el~NEP~~w~-~~~~~~~---~~~~~~~~~~~~~~~~IR~~dp~~ 174 (491)
T 2y8k_A 119 KFYAPRYAKETHVL-YEIHNEPVAWG-PPYSSST---ANPPGAVDMEIDVYRIIRTYAPET 174 (491)
T ss_dssp HHHHHHHTTCTTEE-EECCSSCSSSC-SCTTSTT---SSSTTHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHhCCCCceE-EEeecCCCCCC-Ccccccc---ccHHHHHHHHHHHHHHHHhhCCCc
Confidence 76653 2 233565 99988885310 0000000 011124567777777777777554
No 175
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=58.23 E-value=12 Score=34.61 Aligned_cols=76 Identities=20% Similarity=0.174 Sum_probs=45.8
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeee---ecCCCCCCH-HHHHHHHHH
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDL---ISSLPHQTP-QMWEESLRR 238 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~Dl---I~GlPgqT~-e~~~~~l~~ 238 (471)
++.++..+++|++.|.+...-+.+ +. ++.+..+.++++|+. +..-. +++ |..+. +.+++.++.
T Consensus 26 ~~~l~~a~~~G~~~vEl~~~~~~~----------~~-~~~~~~~~l~~~gl~-i~~~~~~~~~~-~~~~~~~~~~~~i~~ 92 (264)
T 1yx1_A 26 ASFLPLLAMAGAQRVELREELFAG----------PP-DTEALTAAIQLQGLE-CVFSSPLELWR-EDGQLNPELEPTLRR 92 (264)
T ss_dssp GGGHHHHHHHTCSEEEEEGGGCSS----------CC-CHHHHHHHHHHTTCE-EEEEEEEEEEC-TTSSBCTTHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEHHhcCC----------CH-HHHHHHHHHHHcCCE-EEEecchhhcC-CchhHHHHHHHHHHH
Confidence 346777788888888886542222 11 344555666777775 32211 122 12245 778888888
Q ss_pred HHhCCCCcEEEEe
Q 012112 239 TVGAQPKHVSVYD 251 (471)
Q Consensus 239 ~~~l~p~his~y~ 251 (471)
+.+++.+.|.+..
T Consensus 93 A~~lGa~~v~~~~ 105 (264)
T 1yx1_A 93 AEACGAGWLKVSL 105 (264)
T ss_dssp HHHTTCSEEEEEE
T ss_pred HHHcCCCEEEEec
Confidence 8888888777654
No 176
>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A*
Probab=58.06 E-value=14 Score=36.21 Aligned_cols=124 Identities=10% Similarity=0.053 Sum_probs=71.8
Q ss_pred CCCHHHHHHHHHCCCCEEEEcc--CCCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCeeEeeeecCCCC-------C
Q 012112 160 TFDARKMEELMDLGVNRVSLGV--QAFQDELLKSCGRAHG---LKEVYEAIEIVKLCGVENWSLDLISSLPH-------Q 227 (471)
Q Consensus 160 ~l~~e~l~~l~~~GvnrvsiGv--QS~~d~~L~~l~R~~t---~~~~~~ai~~~~~~G~~~v~~DlI~GlPg-------q 227 (471)
.++++.++.+++.|+|-|-|.| +.+-+.. ..-..+ .+.+.++|+.+++.|+. |-+|+- ..|+ +
T Consensus 42 ~~t~~di~~i~~~G~n~vRipi~w~~~~~~~---~~~~~~~~~l~~l~~~v~~a~~~Gi~-vildlH-~~~~w~~~~~~~ 116 (345)
T 3ndz_A 42 MTTHAMINKIKEAGFNTLRLPVTWDGHMGAA---PEYTIDQTWMKRVEEIANYAFDNDMY-VIINLH-HENEWLKPFYAN 116 (345)
T ss_dssp CCCHHHHHHHHHHTCCEEEECCCCTTSBCCT---TTCCBCHHHHHHHHHHHHHHHTTTCE-EEECCC-SCTTTCCCSTTT
T ss_pred CCcHHHHHHHHHCCCCEEEEeeehHHhCCCC---CCCccCHHHHHHHHHHHHHHHHCCCE-EEEecC-Cccccccccccc
Confidence 4689999999999999655554 3321110 011111 46788899999999996 777754 3342 1
Q ss_pred ---CHHHHHHHHHHHHh-CC--CCcEEEEeccccCCChhhhcccCCCCCCCC---HHHHHHHHHHHHHHHHHCCC
Q 012112 228 ---TPQMWEESLRRTVG-AQ--PKHVSVYDLQVEQGTKFGILYTPGEFPLPT---ETQSANFYRMASSMLSSAGY 293 (471)
Q Consensus 228 ---T~e~~~~~l~~~~~-l~--p~his~y~l~~~pgT~l~~~~~~g~~~~p~---~~~~~~~~~~~~~~L~~~Gy 293 (471)
+.+.+.+-.+.+.+ ++ ++++ .|.+.=||..+-.. ..+.... .+...+.++.+.+.+++.|=
T Consensus 117 ~~~~~~~~~~~w~~iA~~y~~~~~~v-~~el~NEP~~~~~~----~~W~~~~~~~~~~l~~~~~~~i~aIR~~g~ 186 (345)
T 3ndz_A 117 EAQVKAQLTKVWTQIANNFKKYGDHL-IFETMNEPRPVGAS----LQWTGGSYENREVVNRYNLTAVNAIRATGG 186 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCTTE-EEESCSCCCCCSGG----GTTSCCCHHHHHHHHHHHHHHHHHHHHTCG
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCce-EEEeccCCCCCCcc----cccCCCCchhHHHHHHHHHHHHHHHHhcCC
Confidence 22333333343333 32 3444 78888888543110 1111112 23445678899999999873
No 177
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=57.71 E-value=25 Score=32.67 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=45.7
Q ss_pred HHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhh
Q 012112 376 MLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGF 455 (471)
Q Consensus 376 ~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~ 455 (471)
+..|....++...+++++.|.+-. .....++.|++.|++.... |...++|| ++|+
T Consensus 158 L~~L~~~~~~s~~eLA~~lglsks-Tv~r~L~~Le~~GlV~r~~-----------------------r~~~~~LT-~~G~ 212 (244)
T 2wte_A 158 LNVLYETKGTGITELAKMLDKSEK-TLINKIAELKKFGILTQKG-----------------------KDRKVELN-ELGL 212 (244)
T ss_dssp HHHHHHHTCBCHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEET-----------------------TTTEEEEC-HHHH
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHH-HHHHHHHHHHHCCCEEEeC-----------------------CccEEEEC-HHHH
Confidence 334445678999999999999865 4667899999999998642 11258996 9999
Q ss_pred chHHH
Q 012112 456 LLSNE 460 (471)
Q Consensus 456 ~~~n~ 460 (471)
.+...
T Consensus 213 ~l~~~ 217 (244)
T 2wte_A 213 NVIKL 217 (244)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98765
No 178
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=57.68 E-value=14 Score=34.20 Aligned_cols=113 Identities=13% Similarity=0.068 Sum_probs=66.1
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCC------CHHHHHHHH
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQ------TPQMWEESL 236 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgq------T~e~~~~~l 236 (471)
++.++.++++|++.|.+......+ . .+..+..+..+.++++|+.-.++..-.++.+. ..+.+++.+
T Consensus 19 ~~~l~~~~~~G~~~vEl~~~~~~~-~-------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 90 (281)
T 3u0h_A 19 VLYLDLARETGYRYVDVPFHWLEA-E-------AERHGDAAVEAMFQRRGLVLANLGLPLNLYDSEPVFLRELSLLPDRA 90 (281)
T ss_dssp HHHHHHHHHTTCSEECCCHHHHHH-H-------HHHHCHHHHHHHHHTTTCEECCEECCSCTTSCHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHcCCCEEEecHHHHHH-H-------hcccCHHHHHHHHHHcCCceEEecccccccCCCHHHHHHHHHHHHHH
Confidence 689999999999999887654321 0 11234556667788889873334333333322 123456688
Q ss_pred HHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 237 RRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 237 ~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
+.+.+++.+.|.+. +.|++... .....+...+.+..+.+..++.|..
T Consensus 91 ~~A~~lG~~~v~~~---~~p~~~~~--------~~~~~~~~~~~l~~l~~~a~~~Gv~ 137 (281)
T 3u0h_A 91 RLCARLGARSVTAF---LWPSMDEE--------PVRYISQLARRIRQVAVELLPLGMR 137 (281)
T ss_dssp HHHHHTTCCEEEEE---CCSEESSC--------HHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred HHHHHcCCCEEEEe---ecCCCCCc--------chhhHHHHHHHHHHHHHHHHHcCCE
Confidence 88899999988743 12321100 0001133455566667777777765
No 179
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=57.13 E-value=58 Score=30.09 Aligned_cols=108 Identities=11% Similarity=0.079 Sum_probs=66.0
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCC-----------CCHHH
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPH-----------QTPQM 231 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg-----------qT~e~ 231 (471)
++.++.++++|++.|.+....+ .+++.+..+.++++|+.-.++.. +.++ ++.+.
T Consensus 41 ~~~l~~~~~~G~~~vEl~~~~~-------------~~~~~~~~~~l~~~gl~v~~~~~--~~~~~l~~~d~~~r~~~~~~ 105 (287)
T 3kws_A 41 NEKLDFMEKLGVVGFEPGGGGL-------------AGRVNEIKQALNGRNIKVSAICA--GFKGFILSTDPAIRKECMDT 105 (287)
T ss_dssp HHHHHHHHHTTCCEEECBSTTC-------------GGGHHHHHHHHTTSSCEECEEEC--CCCSCTTBSSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEecCCch-------------HHHHHHHHHHHHHcCCeEEEEec--CCCCcCCCCCHHHHHHHHHH
Confidence 5889999999999999887742 13455566677788987323322 2221 13467
Q ss_pred HHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCC--CHHHHHHHHHHHHHHHHHCCCc
Q 012112 232 WEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLP--TETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 232 ~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p--~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
+++.++.+.++++++|.+.+ |..-+. +..+.. ..+...+.+..+.+..++.|..
T Consensus 106 ~~~~i~~a~~lGa~~v~~~~-----g~~~~~----~~~p~~~~~~~~~~~~l~~l~~~a~~~Gv~ 161 (287)
T 3kws_A 106 MKEIIAAAGELGSTGVIIVP-----AFNGQV----PALPHTMETRDFLCEQFNEMGTFAAQHGTS 161 (287)
T ss_dssp HHHHHHHHHHTTCSEEEECS-----CCTTCC----SBCCSSHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCEEEEec-----CcCCcC----CCCCCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 88889999999999887643 211110 000000 1133455667777777888864
No 180
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=56.91 E-value=24 Score=33.78 Aligned_cols=79 Identities=10% Similarity=0.093 Sum_probs=52.9
Q ss_pred HHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCC------C-------CHH
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPH------Q-------TPQ 230 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg------q-------T~e 230 (471)
+.++.++++|++.|.++.......... .+..++.+..+.++++|+..+++-.+.++|. . +.+
T Consensus 35 ~~l~~~~~~G~~~vEl~~~~~~~~~~~-----~~~~~~~~l~~~l~~~gL~~~~i~~~~~~~~~~~l~~~d~~~r~~~~~ 109 (335)
T 2qw5_A 35 AHIKKLQRFGYSGFEFPIAPGLPENYA-----QDLENYTNLRHYLDSEGLENVKISTNVGATRTFDPSSNYPEQRQEALE 109 (335)
T ss_dssp HHHHHHHHTTCCEEEEECCCCCGGGHH-----HHHHHHHHHHHHHHHTTCTTCEEEEECCCCSSSCTTCSSHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEecCCCcccccc-----cchHHHHHHHHHHHHCCCCcceeEEEeccCCCCCCCCCCHHHHHHHHH
Confidence 799999999999999987654431111 1235666677788899997222222333331 1 136
Q ss_pred HHHHHHHHHHhCCCCcE
Q 012112 231 MWEESLRRTVGAQPKHV 247 (471)
Q Consensus 231 ~~~~~l~~~~~l~p~hi 247 (471)
.+++.++.+.+++.+.|
T Consensus 110 ~~~~~i~~A~~lG~~~v 126 (335)
T 2qw5_A 110 YLKSRVDITAALGGEIM 126 (335)
T ss_dssp HHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHcCCCEE
Confidence 78888999999999988
No 181
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=56.71 E-value=54 Score=30.90 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEEe---cCCC-CCHHHHHHHHHCCCCEEEEccCCCCH---------HHHHHcCCCCCH
Q 012112 132 FVSSILDTLTDKFGLSLDAEISMEM---DPGT-FDARKMEELMDLGVNRVSLGVQAFQD---------ELLKSCGRAHGL 198 (471)
Q Consensus 132 ~l~~ll~~l~~~~~l~~~~eitiE~---~P~~-l~~e~l~~l~~~GvnrvsiGvQS~~d---------~~L~~l~R~~t~ 198 (471)
.+.+.++.+++.-. .-+.-.. +|+. -+.+.++.|.++|++-|.+|+---|| .-.+++..+.+.
T Consensus 4 ri~~~f~~~~~~~~----~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~ 79 (267)
T 3vnd_A 4 RYQAKFAALKAQDK----GAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTS 79 (267)
T ss_dssp HHHHHHHHHHHHTC----CEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHhcCC----CeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCH
Confidence 45666666665311 1222233 4531 25688999999999999999543222 234455678899
Q ss_pred HHHHHHHHHHHHcCCCeeEeeeecCCCCCCHH--HHHHHHHHHHhCCCCcEEEEeccc
Q 012112 199 KEVYEAIEIVKLCGVENWSLDLISSLPHQTPQ--MWEESLRRTVGAQPKHVSVYDLQV 254 (471)
Q Consensus 199 ~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e--~~~~~l~~~~~l~p~his~y~l~~ 254 (471)
+++.+.++.+|+.+.+ +-+-+| +.-+ ... ...+-++.+.+.+++-+-+-.+.+
T Consensus 80 ~~~~~~v~~ir~~~~~-~Pivlm-~Y~n-pv~~~g~e~f~~~~~~aGvdgvii~Dlp~ 134 (267)
T 3vnd_A 80 SDCFDIITKVRAQHPD-MPIGLL-LYAN-LVFANGIDEFYTKAQAAGVDSVLIADVPV 134 (267)
T ss_dssp HHHHHHHHHHHHHCTT-CCEEEE-ECHH-HHHHHCHHHHHHHHHHHTCCEEEETTSCG
T ss_pred HHHHHHHHHHHhcCCC-CCEEEE-ecCc-HHHHhhHHHHHHHHHHcCCCEEEeCCCCH
Confidence 9999999999986433 334444 1100 000 135567778888999877654444
No 182
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=56.08 E-value=34 Score=35.07 Aligned_cols=101 Identities=12% Similarity=0.258 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec--CCCCCHHHHHHH
Q 012112 92 SNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMD--PGTFDARKMEEL 169 (471)
Q Consensus 92 ~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~--P~~l~~e~l~~l 169 (471)
..|+-.+.+++... +++.|.+.+ |-.++.|..+.+++..+++.++ ..+.+-++ .+.-....+.++
T Consensus 157 ~e~~~~~a~~l~~~--------Gad~I~l~D-T~G~~~P~~v~~lv~~l~~~~~----~~i~~H~Hnd~GlAvAN~laAv 223 (464)
T 2nx9_A 157 LQTWVDVAQQLAEL--------GVDSIALKD-MAGILTPYAAEELVSTLKKQVD----VELHLHCHSTAGLADMTLLKAI 223 (464)
T ss_dssp HHHHHHHHHHHHHT--------TCSEEEEEE-TTSCCCHHHHHHHHHHHHHHCC----SCEEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC--------CCCEEEEcC-CCCCcCHHHHHHHHHHHHHhcC----CeEEEEECCCCChHHHHHHHHH
Confidence 34556666666543 257788864 7778899999999999999873 35666663 333344556555
Q ss_pred HHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 170 MDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 170 ~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
++|++.|.-.+-. ++.+.........+..++..|++
T Consensus 224 -~AGa~~VD~ti~g--------~gertGN~~lE~lv~~L~~~g~~ 259 (464)
T 2nx9_A 224 -EAGVDRVDTAISS--------MSGTYGHPATESLVATLQGTGYD 259 (464)
T ss_dssp -HTTCSEEEEBCGG--------GCSTTSCCBHHHHHHHHTTSTTC
T ss_pred -HhCCCEEEEeccc--------cCCCCcCHHHHHHHHHHHhcCCC
Confidence 6899999877664 44444333444455555556665
No 183
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*
Probab=55.85 E-value=73 Score=30.77 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=69.3
Q ss_pred eeEEEEcC-CC-CCCCC---HHHHHHHHHH---HHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEE-EEccCCCC
Q 012112 115 LETVFFGG-GT-PSLVP---PRFVSSILDT---LTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRV-SLGVQAFQ 185 (471)
Q Consensus 115 v~~i~fGG-GT-ps~l~---~~~l~~ll~~---l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gvnrv-siGvQS~~ 185 (471)
.+-|-+|| .| |..-. .+++++++.. |++.+ +..++|. +...+.++.--++|..-| ++.-..++
T Consensus 47 AdIIDIGgeSTrPGa~~v~~~eE~~Rv~pvI~~l~~~~----~vpiSID----T~~~~Va~aAl~aGa~iINDVsg~~~d 118 (314)
T 2vef_A 47 ASMLDIGGESTRPGSSYVEIEEEIQRVVPVIKAIRKES----DVLISID----TWKSQVAEAALAAGADLVNDITGLMGD 118 (314)
T ss_dssp CSEEEEECCC-----CHHHHHHHHHHHHHHHHHHHHHC----CCEEEEE----CSCHHHHHHHHHTTCCEEEETTTTCSC
T ss_pred CCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhhC----CceEEEe----CCCHHHHHHHHHcCCCEEEECCCCCCC
Confidence 56777988 33 43211 2566665544 55543 3455554 677888888888887655 34444466
Q ss_pred HHHHHHc---C------------CCCC---------------------------HHH-----HHHHHHHHHHcCC--Cee
Q 012112 186 DELLKSC---G------------RAHG---------------------------LKE-----VYEAIEIVKLCGV--ENW 216 (471)
Q Consensus 186 d~~L~~l---~------------R~~t---------------------------~~~-----~~~ai~~~~~~G~--~~v 216 (471)
++++..+ + .+.+ .++ ..+.++.+.++|+ ++|
T Consensus 119 ~~m~~v~a~~~~~vvlmh~~~~g~p~~~~~~~~~~~~~g~~~~~~~~~~y~d~~v~e~v~~~l~~~i~~a~~~GI~~~~I 198 (314)
T 2vef_A 119 EKMPHVVAEARAQVVIMFNPVMARPQHPSSLIFPHFGFGQAFTEEELADFETLPIEELMEAFFERALARAAEAGIAPENI 198 (314)
T ss_dssp TTHHHHHHHHTCEEEEECCHHHHCTTSTTTTTSCCCCC--CCCC--CHHHHHSCHHHHHHHHHHHHHHHHHHHTCCGGGE
T ss_pred hHHHHHHHHcCCCEEEEecCCCCCCCCcccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHcCCChhhE
Confidence 7766542 1 1111 233 3456778888999 568
Q ss_pred EeeeecCCCCCCHHHHHHHHHHHHh
Q 012112 217 SLDLISSLPHQTPQMWEESLRRTVG 241 (471)
Q Consensus 217 ~~DlI~GlPgqT~e~~~~~l~~~~~ 241 (471)
-+|--+|+ |-|.++-.+.|+.+.+
T Consensus 199 ilDPGiGF-~kt~~~nl~ll~~l~~ 222 (314)
T 2vef_A 199 LLDPGIGF-GLTKKENLLLLRDLDK 222 (314)
T ss_dssp EEECCTTS-SCCHHHHHHHHHTHHH
T ss_pred EEeCCCCc-ccchHHHHHHHHHHHH
Confidence 89988887 6676655555554444
No 184
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=55.53 E-value=22 Score=32.35 Aligned_cols=64 Identities=8% Similarity=0.039 Sum_probs=47.5
Q ss_pred ccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchH
Q 012112 379 FRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLS 458 (471)
Q Consensus 379 Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~ 458 (471)
+....|++..+.+++.|.+-. .+...++.|++.||+....+. |...++|| ++|..+.
T Consensus 22 l~~~~~~s~s~aA~~L~isq~-avSr~I~~LE~~~L~~R~~~~---------------------R~~~v~LT-~~G~~l~ 78 (230)
T 3cta_A 22 ASNRAYLTSSKLADMLGISQQ-SASRIIIDLEKNGYITRTVTK---------------------RGQILNIT-EKGLDVL 78 (230)
T ss_dssp TSSEEECCHHHHHHHHTSCHH-HHHHHHHHHHHTTSEEEEEET---------------------TEEEEEEC-HHHHHHH
T ss_pred cccCCCcCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEEEEEcC---------------------CeEEEEEC-HHHHHHH
Confidence 334457889999999998854 577889999999999875311 33468997 9999998
Q ss_pred HHHHHHH
Q 012112 459 NELISHA 465 (471)
Q Consensus 459 n~i~~~~ 465 (471)
..+...+
T Consensus 79 ~~~~~~~ 85 (230)
T 3cta_A 79 YTEFADL 85 (230)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7765443
No 185
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=55.22 E-value=40 Score=32.20 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=44.1
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe--cCCCCCHHHHHHHHHCCCCEEEEccCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM--DPGTFDARKMEELMDLGVNRVSLGVQA 183 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~--~P~~l~~e~l~~l~~~GvnrvsiGvQS 183 (471)
++.|.+. +|-....|....++++.|++.++ +..+.+-+ +-+.-....+..+ ++|+++|...+-.
T Consensus 173 ~d~i~l~-DT~G~~~P~~~~~lv~~l~~~~~---~~~l~~H~Hn~~Gla~An~laAv-~aGa~~vd~tv~G 238 (302)
T 2ftp_A 173 CYEVSLG-DTIGVGTAGATRRLIEAVASEVP---RERLAGHFHDTYGQALANIYASL-LEGIAVFDSSVAG 238 (302)
T ss_dssp CSEEEEE-ESSSCCCHHHHHHHHHHHTTTSC---GGGEEEEEBCTTSCHHHHHHHHH-HTTCCEEEEBGGG
T ss_pred CCEEEEe-CCCCCcCHHHHHHHHHHHHHhCC---CCeEEEEeCCCccHHHHHHHHHH-HhCCCEEEecccc
Confidence 5778887 56677888999999999887652 34667666 3333344555554 6799999887754
No 186
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=54.85 E-value=44 Score=25.61 Aligned_cols=41 Identities=12% Similarity=0.015 Sum_probs=32.7
Q ss_pred HHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEe
Q 012112 375 LMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICL 418 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~ 418 (471)
++..| ..++...++.+.+|.+.. .+...++.|.+.|++...
T Consensus 36 Il~~L--~~~~~~~eLa~~l~is~~-tv~~~L~~L~~~Glv~~~ 76 (96)
T 1y0u_A 36 ILRML--DKGRSEEEIMQTLSLSKK-QLDYHLKVLEAGFCIERV 76 (96)
T ss_dssp HHHHH--HTTCCHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEE
T ss_pred HHHHH--cCCCCHHHHHHHHCcCHH-HHHHHHHHHHHCCCEEEE
Confidence 44444 467999999999999865 467789999999999864
No 187
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A
Probab=54.83 E-value=1.5e+02 Score=28.34 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=70.2
Q ss_pred CCCHHHHHHH-HHCCCC--EEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCC----CCCHHHH
Q 012112 160 TFDARKMEEL-MDLGVN--RVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLP----HQTPQMW 232 (471)
Q Consensus 160 ~l~~e~l~~l-~~~Gvn--rvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlP----gqT~e~~ 232 (471)
.++++.++.| ++.|+| |+.+..+... ........+.+.++++.+.+.|+. |-+|+= +.| ....+.+
T Consensus 68 ~~~~~~~~~l~~~~G~N~VRi~~~~~~~~-----~~~~~~~~~~ld~~v~~a~~~Gi~-VilD~H-~~~~~~~~~~~~~~ 140 (327)
T 3pzt_A 68 YVNKDSLKWLRDDWGITVFRAAMYTADGG-----YIDNPSVKNKVKEAVEAAKELGIY-VIIDWH-ILNDGNPNQNKEKA 140 (327)
T ss_dssp GCSHHHHHHHHHHTCCSEEEEEEESSTTS-----TTTCGGGHHHHHHHHHHHHHHTCE-EEEEEE-CSSSCSTTTTHHHH
T ss_pred CCCHHHHHHHHHhcCCCEEEEEeEECCCC-----cccCHHHHHHHHHHHHHHHHCCCE-EEEEec-cCCCCCchHHHHHH
Confidence 4677888888 579999 5555544210 000011367788999999999997 778875 333 2345555
Q ss_pred HHHHHHHHh-C-CCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q 012112 233 EESLRRTVG-A-QPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 233 ~~~l~~~~~-l-~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
.+-.+.+.+ + +-+.|- |.+.=||..... ..+.....++.+.+.+++.+-.+
T Consensus 141 ~~~w~~~a~r~k~~p~Vi-~el~NEp~~~~~-----------w~~~~~~~~~~~~~~IR~~dp~~ 193 (327)
T 3pzt_A 141 KEFFKEMSSLYGNTPNVI-YEIANEPNGDVN-----------WKRDIKPYAEEVISVIRKNDPDN 193 (327)
T ss_dssp HHHHHHHHHHHTTCTTEE-EECCSCCCSSCC-----------TTTTHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHhCCCCcEE-EEeccCCCCCcc-----------cHHHHHHHHHHHHHHHHhhCCCC
Confidence 555555433 2 223465 888888753210 01234456777777888777554
No 188
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=54.78 E-value=85 Score=28.26 Aligned_cols=74 Identities=8% Similarity=0.047 Sum_probs=47.9
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeec-----C----C--CC---CC
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLIS-----S----L--PH---QT 228 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~-----G----l--Pg---qT 228 (471)
++.++.++++|++.|.+.... ..+ ..+..+.++++|+.-.++..-+ | . |. +.
T Consensus 18 ~~~l~~~~~~G~~~vEl~~~~-----------~~~---~~~~~~~l~~~gl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 83 (260)
T 1k77_A 18 IERFAAARKAGFDAVEFLFPY-----------NYS---TLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEA 83 (260)
T ss_dssp GGHHHHHHHHTCSEEECSCCT-----------TSC---HHHHHHHHHHTTCEEEEEECCCCCGGGTCSCSTTCTTCHHHH
T ss_pred HHHHHHHHHhCCCEEEecCCC-----------CCC---HHHHHHHHHHcCCceEEEecCCcccccccCCCCCChhHHHHH
Confidence 478888999999998887521 123 3344566778888733343321 1 1 11 13
Q ss_pred HHHHHHHHHHHHhCCCCcEEEE
Q 012112 229 PQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 229 ~e~~~~~l~~~~~l~p~his~y 250 (471)
.+.+++.++.+.+++++.|.+.
T Consensus 84 ~~~~~~~i~~a~~lG~~~v~~~ 105 (260)
T 1k77_A 84 HADIDLALEYALALNCEQVHVM 105 (260)
T ss_dssp HHHHHHHHHHHHHTTCSEEECC
T ss_pred HHHHHHHHHHHHHcCCCEEEEC
Confidence 5678888899999999888654
No 189
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=54.69 E-value=50 Score=26.64 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHHHHHH
Q 012112 401 TLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNELISHA 465 (471)
Q Consensus 401 ~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i~~~~ 465 (471)
.+-+.|++|+++|||...... ...+.|.-+++|| ++|..........+
T Consensus 49 tly~~L~rLe~~GlI~~~~~~----------------~~~~~~rk~Y~LT-~~G~~~l~~~~~~~ 96 (116)
T 3f8b_A 49 TLYTIFKRLEKDGIISSYWGD----------------ESQGGRRKYYRLT-EIGHENMRLAFESW 96 (116)
T ss_dssp HHHHHHHHHHHTTSEEEEEEC--------------------CCEEEEEEC-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCEEEEeec----------------cCCCCCceEEEEC-HHHHHHHHHHHHHH
Confidence 466889999999999864210 0012223367997 99999888765443
No 190
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=54.63 E-value=50 Score=31.49 Aligned_cols=108 Identities=11% Similarity=0.088 Sum_probs=61.3
Q ss_pred eEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCC----C-------HHHHHHHHHCCCCEEEEccCCC
Q 012112 116 ETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTF----D-------ARKMEELMDLGVNRVSLGVQAF 184 (471)
Q Consensus 116 ~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l----~-------~e~l~~l~~~GvnrvsiGvQS~ 184 (471)
+.++.||=|||. .+++.+++... ..+.+-++|..- + .+.++.++++|++-|.+|+-+-
T Consensus 67 ~~l~~GGlTPS~-------g~i~~a~~~~~----ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~~~GAdGvVfG~L~~ 135 (287)
T 3iwp_A 67 SGLSEGGTTPSM-------GVLQVVKQSVQ----IPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGADGLVFGALTE 135 (287)
T ss_dssp BCGGGTCBCCCH-------HHHHHHHTTCC----SCEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCT
T ss_pred CCCCCCCCCCCH-------HHHHHHHHhcC----CCeEEEEecCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeeCC
Confidence 345677778875 44555555432 467777887642 3 2578888999999999998543
Q ss_pred CHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEE
Q 012112 185 QDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSV 249 (471)
Q Consensus 185 ~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~ 249 (471)
|- ..+.+...+.++.++..+ +.+.--|.. + .+..+.++++.++++++|-.
T Consensus 136 dg--------~iD~~~~~~Li~~a~~l~---vTFHRAFD~---~-~d~~~Ale~Li~lGvdrILT 185 (287)
T 3iwp_A 136 DG--------HIDKELCMSLMAICRPLP---VTFHRAFDM---V-HDPMAALETLLTLGFERVLT 185 (287)
T ss_dssp TS--------CBCHHHHHHHHHHHTTSC---EEECGGGGG---C-SCHHHHHHHHHHHTCSEEEE
T ss_pred CC--------CcCHHHHHHHHHHcCCCc---EEEECchhc---c-CCHHHHHHHHHHcCCCEEEC
Confidence 31 123444444444443322 322221111 0 12456677777777776643
No 191
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A*
Probab=54.25 E-value=22 Score=34.24 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=16.9
Q ss_pred HHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCC
Q 012112 206 EIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQ 243 (471)
Q Consensus 206 ~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~ 243 (471)
..+.++|+..|.+.- |+++.++.+...+.+.+.+
T Consensus 220 ~~l~~~GldgIEv~~----~~~~~~~~~~~~~lA~~~g 253 (301)
T 3o0f_A 220 DAMIADGLDGLEVWH----RGNPPEQRERLLTIAARHD 253 (301)
T ss_dssp HHHHHHTCCEEEEES----TTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCEEEEeC----CCCCHHHHHHHHHHHHHcC
Confidence 334445555555532 4455555555555555544
No 192
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A*
Probab=53.61 E-value=23 Score=32.60 Aligned_cols=99 Identities=15% Similarity=0.209 Sum_probs=60.5
Q ss_pred CCCCCCHH-----HHHHHHHHHHHHcCCCCCcEEEEEecCCCCC--HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCC
Q 012112 124 TPSLVPPR-----FVSSILDTLTDKFGLSLDAEISMEMDPGTFD--ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAH 196 (471)
Q Consensus 124 Tps~l~~~-----~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~--~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~ 196 (471)
+||++..+ .+.+++..|.+.. +-.+++|+.+.+.. -+..+.|.+.+ .++-+-|=+
T Consensus 28 NPsli~k~~~~g~~~~~~~~ei~~~v----~G~Vs~EV~a~d~e~mi~eA~~L~~~~-~nv~IKIP~------------- 89 (223)
T 3s1x_A 28 NPTLISKEAVNGKKYGDIIREILKIV----DGPVSVEVVSTKYEGMVEEARKIHGLG-DNAVVKIPM------------- 89 (223)
T ss_dssp CHHHHHHHSCTTCCHHHHHHHHHHHC----SSCEEEECCCCSHHHHHHHHHHHHHTC-TTEEEEEES-------------
T ss_pred CHHHHHhhhccCCCHHHHHHHHHHhC----CCCEEEEEccCCHHHHHHHHHHHHHhC-CCEEEEeCC-------------
Confidence 36654433 3455555555553 23799998864321 13334455554 344443332
Q ss_pred CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 197 GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 197 t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
|. +-.+|++.+.+.|+. +|+.+||.. .| . -.+.+.|+..||.|-
T Consensus 90 T~-eGl~A~~~L~~~GI~-vn~TlifS~-~Q-------A-~~Aa~AGa~yISPfv 133 (223)
T 3s1x_A 90 TE-DGLRAIKTLSSEHIN-TNCTLVFNP-IQ-------A-LLAAKAGVTYVSPFV 133 (223)
T ss_dssp SH-HHHHHHHHHHHTTCC-EEEEEECSH-HH-------H-HHHHHTTCSEEEEBS
T ss_pred CH-HHHHHHHHHHHCCCc-EEEEEeCCH-HH-------H-HHHHHcCCeEEEeec
Confidence 33 567889999999998 999999975 22 1 235567898888775
No 193
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=52.99 E-value=61 Score=28.64 Aligned_cols=90 Identities=17% Similarity=0.215 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCCCCcEEEEEecCCCC-CHHH-HHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 012112 135 SILDTLTDKFGLSLDAEISMEMDPGTF-DARK-MEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCG 212 (471)
Q Consensus 135 ~ll~~l~~~~~l~~~~eitiE~~P~~l-~~e~-l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G 212 (471)
++++.+++.+. +..+ .+|+-.. ..+. ++.+.++|++.|.++..+. .++..+.++.+++.|
T Consensus 42 ~~i~~ir~~~~---~~~i--~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~-------------~~~~~~~~~~~~~~g 103 (211)
T 3f4w_A 42 NAIKAIKEKYP---HKEV--LADAKIMDGGHFESQLLFDAGADYVTVLGVTD-------------VLTIQSCIRAAKEAG 103 (211)
T ss_dssp HHHHHHHHHCT---TSEE--EEEEEECSCHHHHHHHHHHTTCSEEEEETTSC-------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCC---CCEE--EEEEEeccchHHHHHHHHhcCCCEEEEeCCCC-------------hhHHHHHHHHHHHcC
Confidence 55677776641 2233 2333222 2344 8999999999999987753 245677888889988
Q ss_pred CCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEE
Q 012112 213 VENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSV 249 (471)
Q Consensus 213 ~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~ 249 (471)
.. +-++++ + | +| ..+.++.+.+.+++.|.+
T Consensus 104 ~~-~~v~~~-~-~-~t---~~~~~~~~~~~g~d~i~v 133 (211)
T 3f4w_A 104 KQ-VVVDMI-C-V-DD---LPARVRLLEEAGADMLAV 133 (211)
T ss_dssp CE-EEEECT-T-C-SS---HHHHHHHHHHHTCCEEEE
T ss_pred Ce-EEEEec-C-C-CC---HHHHHHHHHHcCCCEEEE
Confidence 76 444433 1 3 23 234567778888997754
No 194
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=52.93 E-value=1.1e+02 Score=28.79 Aligned_cols=107 Identities=8% Similarity=0.095 Sum_probs=57.2
Q ss_pred HHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHc-CCCeeEee------------------eecCC
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLC-GVENWSLD------------------LISSL 224 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~-G~~~v~~D------------------lI~Gl 224 (471)
+..+.+.+.|.+-|.+|.+|..++. .+.+...++.+++. ++. +++| +|-..
T Consensus 38 ~~a~~~v~~GAdiIDIg~~s~~~eE---------~~rv~~vi~~l~~~~~~p-isIDT~~~~v~~aal~a~~Ga~iINdv 107 (271)
T 2yci_X 38 EWARRQAEKGAHYLDVNTGPTADDP---------VRVMEWLVKTIQEVVDLP-CCLDSTNPDAIEAGLKVHRGHAMINST 107 (271)
T ss_dssp HHHHHHHHTTCSEEEEECCSCSSCH---------HHHHHHHHHHHHHHCCCC-EEEECSCHHHHHHHHHHCCSCCEEEEE
T ss_pred HHHHHHHHCCCCEEEEcCCcCchhH---------HHHHHHHHHHHHHhCCCe-EEEeCCCHHHHHHHHHhCCCCCEEEEC
Confidence 4556677788888888888854432 22333333333332 333 3333 22223
Q ss_pred CCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q 012112 225 PHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 225 PgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
-+.+ +.+.+.+..+.+.+..-|-. .. -+.|+| .+.++..+.+....+.+.++|+..
T Consensus 108 s~~~-d~~~~~~~~~a~~~~~vv~m-~~-d~~G~p------------~t~~~~~~~l~~~~~~a~~~Gi~~ 163 (271)
T 2yci_X 108 SADQ-WKMDIFFPMAKKYEAAIIGL-TM-NEKGVP------------KDANDRSQLAMELVANADAHGIPM 163 (271)
T ss_dssp CSCH-HHHHHHHHHHHHHTCEEEEE-SC-BTTBCC------------CSHHHHHHHHHHHHHHHHHTTCCG
T ss_pred CCCc-cccHHHHHHHHHcCCCEEEE-ec-CCCCCC------------CCHHHHHHHHHHHHHHHHHCCCCc
Confidence 3332 44555566666665432111 10 012322 235667778888888999999975
No 195
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=52.80 E-value=29 Score=29.76 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=39.6
Q ss_pred hhHHHHhC--------------CChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCch
Q 012112 388 KSFGETFG--------------CSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPE 453 (471)
Q Consensus 388 ~~~~~~fg--------------~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 453 (471)
.++.+.|| .+- ..+.++|+.|++.|+|+...+. ..++| +.
T Consensus 71 ~~La~~~gg~k~~g~~p~~~~~vSr-~tVR~AL~~Le~~GlV~~~~~~------------------------G~~Vt-~~ 124 (150)
T 2v7f_A 71 ERLRTYYGGRKNRGHAPERFYKAGG-SIIRKALQQLEAAGFVEKVPGK------------------------GRVIT-PK 124 (150)
T ss_dssp HHHHHHHCC----CCCTTSCCCHHH-HHHHHHHHHHHHTTSEEEETTT------------------------EEEEC-HH
T ss_pred HHHHHHHCCCccCCcCCccccccch-HHHHHHHHHHHHCCCEEEeCCC------------------------ceEEC-CC
Confidence 77777777 442 2467899999999999875432 23675 88
Q ss_pred hhchHHHHHHHHHhc
Q 012112 454 GFLLSNELISHAFGV 468 (471)
Q Consensus 454 G~~~~n~i~~~~~~~ 468 (471)
|....+.|..+++..
T Consensus 125 ~~~~l~~ia~~i~~~ 139 (150)
T 2v7f_A 125 GRSFLDKIATELKKE 139 (150)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888888777643
No 196
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=52.75 E-value=37 Score=35.50 Aligned_cols=103 Identities=15% Similarity=0.297 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec--CCCCCHHHHHHH
Q 012112 92 SNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMD--PGTFDARKMEEL 169 (471)
Q Consensus 92 ~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~--P~~l~~e~l~~l 169 (471)
..|+-.+++++... +++.|.+.+ |-.++.|..+.++++.+++.++ ++..+.+-++ .+.-....+..+
T Consensus 174 ~e~~~~~a~~l~~~--------Gad~I~L~D-T~G~~~P~~v~~lv~~l~~~~p--~~i~I~~H~Hnd~GlAvAN~laAv 242 (539)
T 1rqb_A 174 VEGYVKLAGQLLDM--------GADSIALKD-MAALLKPQPAYDIIKAIKDTYG--QKTQINLHCHSTTGVTEVSLMKAI 242 (539)
T ss_dssp HHHHHHHHHHHHHT--------TCSEEEEEE-TTCCCCHHHHHHHHHHHHHHHC--TTCCEEEEEBCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--------CCCEEEeCC-CCCCcCHHHHHHHHHHHHHhcC--CCceEEEEeCCCCChHHHHHHHHH
Confidence 34566666666543 156788864 7778899999999999999875 3456777664 322244555555
Q ss_pred HHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 170 MDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 170 ~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
++|+++|.-.+-. ++.+.........+..++..|++
T Consensus 243 -eAGa~~VD~ti~g--------~GertGN~~lE~lv~~L~~~g~~ 278 (539)
T 1rqb_A 243 -EAGVDVVDTAISS--------MSLGPGHNPTESVAEMLEGTGYT 278 (539)
T ss_dssp -HTTCSEEEEBCGG--------GCSTTSBCBHHHHHHHTTTSSEE
T ss_pred -HhCCCEEEEeccc--------cCCCccChhHHHHHHHHHhcCCC
Confidence 6899999877753 55544444444555555555543
No 197
>3m16_A Transaldolase; dimer, molecular replac swiss-model, structural genomics, PSI-2, protein structure initiative; 2.79A {Oleispira antarctica} SCOP: c.1.10.1
Probab=52.60 E-value=1.2e+02 Score=29.50 Aligned_cols=135 Identities=18% Similarity=0.261 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHcC-----CCCCcEEEEEecCC-CCCH--------HHHHHHHHCCCC--EEEEccCCCCHHHHHHcCC
Q 012112 131 RFVSSILDTLTDKFG-----LSLDAEISMEMDPG-TFDA--------RKMEELMDLGVN--RVSLGVQAFQDELLKSCGR 194 (471)
Q Consensus 131 ~~l~~ll~~l~~~~~-----l~~~~eitiE~~P~-~l~~--------e~l~~l~~~Gvn--rvsiGvQS~~d~~L~~l~R 194 (471)
+++...++.+.-.|+ . .+-.+++|++|. ..+. +..+.+.+.|++ +|-|-|=+
T Consensus 76 ~~v~~a~D~l~v~~g~ei~~~-v~G~VS~EV~~~ls~d~e~~i~eA~~l~~l~~~~gi~~~nv~IKIP~----------- 143 (329)
T 3m16_A 76 TTLENVGDKLAVNIGCEVLTS-IPGVISTEVDARLSFDTQATVAKARKLIRLYQDAGIDSDRILIKIAS----------- 143 (329)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-CSSCEEEECCGGGTTCHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEC-----------
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CCCcEEEEECCcccCCHHHHHHHHHHHHHhhhhhCCCCCcEEEEeCC-----------
Confidence 456666666655552 2 234899999985 2232 234445556776 56665533
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCC-CCCC
Q 012112 195 AHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEF-PLPT 273 (471)
Q Consensus 195 ~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~-~~p~ 273 (471)
|. +-++|++.+.+.|+. +|+.+||.+ . -...+.+.++.-||.|-=.+.. .++. ..|.. ..+.
T Consensus 144 --T~-eGl~A~~~L~~~GI~-~N~TliFS~-~--------Qa~aaA~AGa~~ISPFVgRidd---~~~~-~~~~~~~~~~ 206 (329)
T 3m16_A 144 --TW-EGIQAAKILEAEGIH-CNLTLLFHF-A--------QAQACAEAGTTLISPFVGRILD---WYKA-NSGQSEYSAS 206 (329)
T ss_dssp --SH-HHHHHHHHHHHTTCC-EEEEEECSH-H--------HHHHHHHTTCSEEEEBHHHHHH---HHHT-TSSCCCCCTT
T ss_pred --CH-HHHHHHHHHHHCCCc-EEEEEeCCH-H--------HHHHHHHcCCcEEEeehhHHHH---Hhhh-cccccccccc
Confidence 43 457888999999997 999999975 1 1234556788888887533321 0100 01110 1122
Q ss_pred HHHHHHHHHHHHHHHHHCCCc
Q 012112 274 ETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 274 ~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
++.-...-..+.++.++.||.
T Consensus 207 ~~~Gv~~v~~i~~~y~~~g~~ 227 (329)
T 3m16_A 207 EDPGVVSVTEIYNFYKSHGFK 227 (329)
T ss_dssp TCHHHHHHHHHHHHHHHTTCC
T ss_pred cCcHHHHHHHHHHHHHHcCCC
Confidence 223344556666777888885
No 198
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=52.44 E-value=1.1e+02 Score=28.68 Aligned_cols=76 Identities=12% Similarity=0.179 Sum_probs=51.3
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeee----cCCCCC-------CHHH
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLI----SSLPHQ-------TPQM 231 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI----~GlPgq-------T~e~ 231 (471)
++ ++.++++|++.|.+......+ ....++.+..+.++++|+. +..-.- +.+.+. ..+.
T Consensus 40 ~~-l~~~~~~G~~~vEl~~~~~~~---------~~~~~~~~l~~~l~~~gl~-i~~~~~~~~~~~l~~~d~~~r~~~~~~ 108 (309)
T 2hk0_A 40 PY-IEKVAKLGFDIIEVAAHHINE---------YSDAELATIRKSAKDNGII-LTAGIGPSKTKNLSSEDAAVRAAGKAF 108 (309)
T ss_dssp HH-HHHHHHTTCSEEEEEHHHHTT---------SCHHHHHHHHHHHHHTTCE-EEEECCCCSSSCSSCSCHHHHHHHHHH
T ss_pred HH-HHHHHHhCCCEEEeccCCccc---------cchhhHHHHHHHHHHcCCe-EEEecCCCCCCCCCCCCHHHHHHHHHH
Confidence 35 999999999999987642111 1235666777788999997 555211 112221 2367
Q ss_pred HHHHHHHHHhCCCCcEEE
Q 012112 232 WEESLRRTVGAQPKHVSV 249 (471)
Q Consensus 232 ~~~~l~~~~~l~p~his~ 249 (471)
+++.++.+.+++++.|.+
T Consensus 109 ~~~~i~~A~~lG~~~v~~ 126 (309)
T 2hk0_A 109 FERTLSNVAKLDIHTIGG 126 (309)
T ss_dssp HHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHcCCCEEEe
Confidence 888999999999998863
No 199
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=52.38 E-value=57 Score=30.89 Aligned_cols=29 Identities=24% Similarity=0.246 Sum_probs=15.1
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHc
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKF 144 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~ 144 (471)
++.|.+.+ |-..+.|....++++.+++.+
T Consensus 169 ~d~i~l~D-t~G~~~P~~~~~lv~~l~~~~ 197 (295)
T 1ydn_A 169 CHEVSLGD-TIGRGTPDTVAAMLDAVLAIA 197 (295)
T ss_dssp CSEEEEEE-TTSCCCHHHHHHHHHHHHTTS
T ss_pred CCEEEecC-CCCCcCHHHHHHHHHHHHHhC
Confidence 34455542 444455566666666665543
No 200
>1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A
Probab=52.35 E-value=35 Score=32.89 Aligned_cols=124 Identities=15% Similarity=0.175 Sum_probs=73.1
Q ss_pred HHHHHHHHHCCCC--EEEEccCCCCHHHH-HHcC-----C----CCCHHHHHHHHHHHHHcCCCeeEeeeecCCCC----
Q 012112 163 ARKMEELMDLGVN--RVSLGVQAFQDELL-KSCG-----R----AHGLKEVYEAIEIVKLCGVENWSLDLISSLPH---- 226 (471)
Q Consensus 163 ~e~l~~l~~~Gvn--rvsiGvQS~~d~~L-~~l~-----R----~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg---- 226 (471)
++.++.|+++|+| |+.++.+.+.+... ..++ . ....+.+.++++.+++.|+. |-+|+-- |+
T Consensus 47 ~~~~~~~~~~G~n~vRi~~~~~~~~~~~~~~~~~~~~~np~~~g~~~~~~ld~~v~~a~~~Gi~-vild~h~--~~~~~~ 123 (358)
T 1ece_A 47 RSMLDQIKSLGYNTIRLPYSDDILKPGTMPNSINFYQMNQDLQGLTSLQVMDKIVAYAGQIGLR-IILDRHR--PDCSGQ 123 (358)
T ss_dssp HHHHHHHHHTTCCEEEEEEEGGGGSTTCCCCSCCCSSSCTTTTTCCHHHHHHHHHHHHHHTTCE-EEEEEEE--SBTTBC
T ss_pred HHHHHHHHHcCCCEEEeeccHHHhcCCCCCccccccccCccccCccHHHHHHHHHHHHHHCCCE-EEEecCC--CCCCCC
Confidence 7889999999999 45555333322100 0000 0 11456778899999999997 8888764 32
Q ss_pred --------CCHHHHHHHHHHHHh-CC-CCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q 012112 227 --------QTPQMWEESLRRTVG-AQ-PKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 227 --------qT~e~~~~~l~~~~~-l~-p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
.+.+.+.+-++.+.+ ++ -+.|-.|.+.=||..... ...+ .+.....+.++.+.+.+++.+=.+
T Consensus 124 ~~~w~~~~~~~~~~~~~~~~ia~r~~~~p~v~~~el~NEP~~~~~--w~~~----~~~~~~~~~~~~~~~~Ir~~dp~~ 196 (358)
T 1ece_A 124 SALWYTSSVSEATWISDLQALAQRYKGNPTVVGFDLHNEPHDPAC--WGCG----DPSIDWRLAAERAGNAVLSVNPNL 196 (358)
T ss_dssp CSSSCCSSSCHHHHHHHHHHHHHHTTTCTTEEEEECSSCCCTTCB--SSCC----CTTTBHHHHHHHHHHHHHHHCTTS
T ss_pred CCCCcCCCccHHHHHHHHHHHHHHhcCCCcEEEEEcccCCCCccc--CCCC----CCHHHHHHHHHHHHHHHHhhCCCe
Confidence 346777777777765 32 235777888888854310 0011 112233445666666676665443
No 201
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=51.99 E-value=24 Score=28.13 Aligned_cols=52 Identities=19% Similarity=0.151 Sum_probs=33.4
Q ss_pred hCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHHHHH
Q 012112 394 FGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNELISH 464 (471)
Q Consensus 394 fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i~~~ 464 (471)
++.+.. .+-+.|++|+++|||...... ..+-|.-+++|| ++|..........
T Consensus 36 ~~i~~~-tly~~L~~Le~~GlI~~~~~~-----------------~~~r~r~~y~LT-~~G~~~l~~~~~~ 87 (108)
T 3l7w_A 36 ASIKES-TLYPILKKLEKAGYLSTYTQE-----------------HQGRRRKYYHLT-DSGEKHLVYLTKE 87 (108)
T ss_dssp CCCCHH-HHHHHHHHHHHTTSEEEEEEE-----------------ETTEEEEEEEEC-HHHHHHHHHHHHH
T ss_pred hCCCcC-hHHHHHHHHHHCCCeEEEeec-----------------CCCCcceEEEEC-HHHHHHHHHHHHH
Confidence 344433 466789999999999864310 001112357897 9999988776444
No 202
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=51.87 E-value=31 Score=27.75 Aligned_cols=66 Identities=12% Similarity=0.177 Sum_probs=47.3
Q ss_pred HHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchh
Q 012112 375 LMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEG 454 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G 454 (471)
|+.-|. ..++...++.+.+|.+-. .+...++.|.+.|+|.....+ |.-+++|| ++|
T Consensus 23 Il~~L~-~~~~~~~eLa~~l~is~~-tvs~hL~~L~~~GlV~~~~~g---------------------r~~~y~l~-~~~ 78 (118)
T 3f6o_A 23 VLGRLS-RGPATVSELAKPFDMALP-SFMKHIHFLEDSGWIRTHKQG---------------------RVRTCAIE-KEP 78 (118)
T ss_dssp HHHHHH-TCCEEHHHHHTTCCSCHH-HHHHHHHHHHHTTSEEEEEET---------------------TEEEEEEC-SHH
T ss_pred HHHHHH-hCCCCHHHHHHHhCcCHH-HHHHHHHHHHHCCCeEEEecC---------------------CEEEEEEC-HHH
Confidence 333444 467899999999998854 467789999999999865322 23368996 899
Q ss_pred hchHHHHHHH
Q 012112 455 FLLSNELISH 464 (471)
Q Consensus 455 ~~~~n~i~~~ 464 (471)
+......+..
T Consensus 79 ~~~l~~~~~~ 88 (118)
T 3f6o_A 79 FTAVEAWLAE 88 (118)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8776665554
No 203
>3l55_A B-1,4-endoglucanase/cellulase; putative beta-1,4-endoglucanase, glycosyl hydrolase family 5, mixed alpha-beta, TIM barrel; HET: MSE; 1.60A {Prevotella bryantii} PDB: 3vdh_A*
Probab=51.23 E-value=50 Score=32.31 Aligned_cols=123 Identities=13% Similarity=0.101 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHCCCCEEEEcc--CCCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCeeEeeeecCCCC--------
Q 012112 160 TFDARKMEELMDLGVNRVSLGV--QAFQDELLKSCGRAHG---LKEVYEAIEIVKLCGVENWSLDLISSLPH-------- 226 (471)
Q Consensus 160 ~l~~e~l~~l~~~GvnrvsiGv--QS~~d~~L~~l~R~~t---~~~~~~ai~~~~~~G~~~v~~DlI~GlPg-------- 226 (471)
.++++.++.+++.|+|.|-|.| +.+.+. .-..+ .+.+.++|+.+++.|+. |-+|+- ..||
T Consensus 52 ~~t~~di~~ik~~G~N~vRipi~w~~~~~~-----~g~~d~~~l~~ld~vVd~a~~~Gi~-vIldlH-~~~g~~~g~w~~ 124 (353)
T 3l55_A 52 ETTQDMMTFLMQNGFNAVRIPVTWYEHMDA-----EGNVDEAWMMRVKAIVEYAMNAGLY-AIVNVH-HDTAAGSGAWIK 124 (353)
T ss_dssp CCCHHHHHHHHHTTEEEEEECCCCGGGBCT-----TCCBCHHHHHHHHHHHHHHHHHTCE-EEEECC-TTBSSSTTCCBC
T ss_pred CCCHHHHHHHHHcCCCEEEEcccHHHhcCC-----CCCcCHHHHHHHHHHHHHHHHCCCE-EEEECC-CCCcccCCCccc
Confidence 4699999999999998555554 332211 11112 45678899999999997 888865 3443
Q ss_pred C-------CHHHHHHHHHHHHh-CC--CCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q 012112 227 Q-------TPQMWEESLRRTVG-AQ--PKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAG 292 (471)
Q Consensus 227 q-------T~e~~~~~l~~~~~-l~--p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~G 292 (471)
. +.+.+.+-.+.+.+ ++ ++++ .|.+.=||...-.. ...+. .....+...+.++.+.+.+++.|
T Consensus 125 ~~~~~~~~~~~~~~~~w~~iA~~yk~~~~~v-~fel~NEP~~~~~~-W~~~~-~~~~~~~l~~~~q~~i~aIRa~g 197 (353)
T 3l55_A 125 ADTDVYAATKEKFKKLWTQIANALADYDQHL-LFEGYNEMLDGNNS-WDEPQ-KASGYEALNNYAQDFVDAVRATG 197 (353)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTTTSCTTE-EEECCSCCCCTTCC-SSSCS-STTHHHHHHHHHHHHHHHHHTTC
T ss_pred CCccccHHHHHHHHHHHHHHHHHHcCCCCeE-EEEEecCCCCCCCc-ccccc-chhHHHHHHHHHHHHHHHHHhcC
Confidence 1 23444443344333 32 3433 67777777432111 00000 00112344567888999999987
No 204
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Probab=50.75 E-value=64 Score=31.41 Aligned_cols=57 Identities=18% Similarity=0.113 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHH-HhCCCCcEEEEeccc-cCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc-eecccccc
Q 012112 228 TPQMWEESLRRT-VGAQPKHVSVYDLQV-EQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR-HYEISSYG 302 (471)
Q Consensus 228 T~e~~~~~l~~~-~~l~p~his~y~l~~-~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~-~yeis~fa 302 (471)
+.+.+.+.++.- .+|+.|+|-+|.+.- .+.++ .+ +.+ .+.+.|.+.|.. .+.+|||.
T Consensus 133 s~~~i~~~~e~SL~rLg~dyiDl~~lH~p~~~~~--------------~~---e~~-~aL~~l~~~Gkir~iGvSn~~ 192 (353)
T 3erp_A 133 SRKYLIASLDQSLKRMGLEYVDIFYHHRPDPETP--------------LK---ETM-KALDHLVRHGKALYVGISNYP 192 (353)
T ss_dssp CHHHHHHHHHHHHHHHTCSCEEEEEECSCCTTSC--------------HH---HHH-HHHHHHHHTTSEEEEEEESCC
T ss_pred CHHHHHHHHHHHHHHhCCCeEeEEEecCCCCCCC--------------HH---HHH-HHHHHHHHCCCccEEEecCCC
Confidence 678888888764 458999999998642 22221 11 223 345567778865 46788874
No 205
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=50.60 E-value=1.2e+02 Score=34.72 Aligned_cols=101 Identities=12% Similarity=0.145 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec--CCCCCHHHHHHH
Q 012112 92 SNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMD--PGTFDARKMEEL 169 (471)
Q Consensus 92 ~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~--P~~l~~e~l~~l 169 (471)
..|+-.+.+++.... ++.|.+.+ |-.++.|..+.+++..+++.++ ..+.+.+| .+.-....+..+
T Consensus 691 ~~~~~~~a~~~~~~G--------a~~i~l~D-t~G~~~P~~~~~lv~~l~~~~~----~~i~~H~Hnt~G~a~An~laA~ 757 (1150)
T 3hbl_A 691 LEYYVKLAKELEREG--------FHILAIKD-MAGLLKPKAAYELIGELKSAVD----LPIHLHTHDTSGNGLLTYKQAI 757 (1150)
T ss_dssp HHHHHHHHHHHHHTT--------CSEEEEEE-TTCCCCHHHHHHHHHHHHHHCC----SCEEEEECBTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--------CCeeeEcC-ccCCCCHHHHHHHHHHHHHhcC----CeEEEEeCCCCcHHHHHHHHHH
Confidence 456666777776542 56788864 8888999999999999999863 35666664 322244555555
Q ss_pred HHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 170 MDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 170 ~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
++|+++|.-.+-++ |...........+..++..|++
T Consensus 758 -~aGa~~vD~ai~Gl--------G~~~gn~~lE~lv~~L~~~g~~ 793 (1150)
T 3hbl_A 758 -DAGVDIIDTAVASM--------SGLTSQPSANSLYYALNGFPRH 793 (1150)
T ss_dssp -HTTCSEEEEBCGGG--------CSBTSCCBHHHHHHHTTTSSCC
T ss_pred -HhCCCEEEEecccc--------CCCCCCccHHHHHHHHHhcCCC
Confidence 58999998777653 4333222444455555555655
No 206
>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A*
Probab=50.60 E-value=58 Score=33.18 Aligned_cols=139 Identities=12% Similarity=0.019 Sum_probs=81.2
Q ss_pred HHHHHHHHHCCCC--EEEEccCCCCHHHH---------HHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCC-----
Q 012112 163 ARKMEELMDLGVN--RVSLGVQAFQDELL---------KSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPH----- 226 (471)
Q Consensus 163 ~e~l~~l~~~Gvn--rvsiGvQS~~d~~L---------~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg----- 226 (471)
++.++.|++.|+| ||.++.+.+.+... ..+.-....+.+.+.|+.+++.|+. |-+|+--.-.+
T Consensus 87 ~~~i~~ik~~G~N~VRipi~~~~l~~~~~p~~~~~~~np~~~~~~~l~~ld~vV~~a~~~Gi~-VIldlH~~~~~~~~~~ 165 (458)
T 3qho_A 87 EDMLLQIKSLGFNAIRLPFCTESVKPGTQPIGIDYSKNPDLRGLDSLQIMEKIIKKAGDLGIF-VLLDYHRIGCTHIEPL 165 (458)
T ss_dssp HHHHHHHHHTTCCEEEEEEETGGGSTTCCCCCCCTTTCGGGTTCCHHHHHHHHHHHHHHTTCE-EEEEEEESSSSSCCSS
T ss_pred HHHHHHHHHcCCCEEEEeeeHHHhCCCCCccccccccCccccchHHHHHHHHHHHHHHHCCCE-EEEecccCCCccCCCc
Confidence 5789999999999 66777666544210 0000112467788999999999997 77877542111
Q ss_pred -----CCHHHHHHHHHHHHhC--CCCcEEEEeccccCCChhhh--cccC---CCCC-CCCHHHHHHHHHHHHHHHHHCCC
Q 012112 227 -----QTPQMWEESLRRTVGA--QPKHVSVYDLQVEQGTKFGI--LYTP---GEFP-LPTETQSANFYRMASSMLSSAGY 293 (471)
Q Consensus 227 -----qT~e~~~~~l~~~~~l--~p~his~y~l~~~pgT~l~~--~~~~---g~~~-~p~~~~~~~~~~~~~~~L~~~Gy 293 (471)
.+.+.+.+-.+.+.+. +-+.|-.|.+.-||...... .+.. ..+. -.+...-...++.+.+.+.+.+=
T Consensus 166 W~~~~~~~~~~~~~w~~lA~ryk~~p~Vi~~eL~NEP~~~~~~~~~~~~~~~~~W~~~~~~~~w~~~~~~ai~aIRa~dp 245 (458)
T 3qho_A 166 WYTEDFSEEDFINTWIEVAKRFGKYWNVIGADLKNEPHSVTSPPAAYTDGTGATWGMGNPATDWNLAAERIGKAILKVAP 245 (458)
T ss_dssp SCBTTBCHHHHHHHHHHHHHHHTTSTTEEEEECSSCCCCSSCTTGGGTSSSSCBSSSSCTTTBHHHHHHHHHHHHHHHCT
T ss_pred cCCchhhHHHHHHHHHHHHHHhCCCCCEEEEEccCCCCcccccccccccccccccCCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 2567777777766542 33467778888888642110 0000 0000 01122345567777788887775
Q ss_pred ce---ecccccc
Q 012112 294 RH---YEISSYG 302 (471)
Q Consensus 294 ~~---yeis~fa 302 (471)
.+ .+-.+|.
T Consensus 246 ~~lIiv~G~~w~ 257 (458)
T 3qho_A 246 HWLIFVEGTQFT 257 (458)
T ss_dssp TCEEEECCBSCC
T ss_pred CCEEEEcCCccc
Confidence 54 3444444
No 207
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=50.55 E-value=61 Score=24.71 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=31.5
Q ss_pred cCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEec
Q 012112 382 ARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLD 419 (471)
Q Consensus 382 ~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~ 419 (471)
..++...++.+.+|.+.. .+...++.|++.|++....
T Consensus 34 ~~~~t~~ela~~l~is~~-tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKT-TVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp CSCEEHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCHHHHHHHHCcCHH-HHHHHHHHHHHCCCeEeec
Confidence 678999999999999865 4677899999999998653
No 208
>2bp1_A Aflatoxin B1 aldehyde reductase member 2; oxidoreductase, aldo-keto reductase family 7, SSA reductase, barrel; HET: FLC NDP; 2.4A {Homo sapiens}
Probab=50.33 E-value=89 Score=30.45 Aligned_cols=60 Identities=22% Similarity=0.321 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHH-hCCCCcEEEEecccc-CCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc-eecccccc
Q 012112 226 HQTPQMWEESLRRTV-GAQPKHVSVYDLQVE-QGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR-HYEISSYG 302 (471)
Q Consensus 226 gqT~e~~~~~l~~~~-~l~p~his~y~l~~~-pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~-~yeis~fa 302 (471)
+.+.+.+++.++.-+ +|+.|+|-+|.+.-. +.+ + . .+.+. +.+.|.+.|.. .+.+|||.
T Consensus 114 ~~~~~~i~~~~e~SL~rLg~dyiDl~~lH~p~~~~-------------~-~---~e~~~-aL~~l~~~Gkir~iGvSn~~ 175 (360)
T 2bp1_A 114 SLKPDSVRSQLETSLKRLQCPQVDLFYLHAPDHGT-------------P-V---EETLH-ACQRLHQEGKFVELGLSNYA 175 (360)
T ss_dssp CSSHHHHHHHHHHHHHHHTCSCEEEEEECSCCTTS-------------C-H---HHHHH-HHHHHHHTTSEEEEEEESCC
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEeEEEecCCCCCC-------------C-H---HHHHH-HHHHHHHCCCccEEEEeCCC
Confidence 357888888888654 589999999976421 111 1 1 12333 55667778865 46788885
Q ss_pred C
Q 012112 303 E 303 (471)
Q Consensus 303 ~ 303 (471)
.
T Consensus 176 ~ 176 (360)
T 2bp1_A 176 S 176 (360)
T ss_dssp H
T ss_pred H
Confidence 3
No 209
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Probab=49.85 E-value=73 Score=30.47 Aligned_cols=57 Identities=18% Similarity=0.123 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHH-HhCCCCcEEEEecccc-CCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc-eecccccc
Q 012112 228 TPQMWEESLRRT-VGAQPKHVSVYDLQVE-QGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR-HYEISSYG 302 (471)
Q Consensus 228 T~e~~~~~l~~~-~~l~p~his~y~l~~~-pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~-~yeis~fa 302 (471)
+.+.+++.++.- .+|+.|+|-+|.+.-. +.+ | .+ +.+ .+.+.|.+.|.. ++.+|||.
T Consensus 98 s~~~i~~~~e~SL~rLg~dyiDl~~lH~p~~~~-------------~-~~---e~~-~al~~l~~~Gkir~iGvSn~~ 157 (327)
T 3eau_A 98 SRKHIIEGLKASLERLQLEYVDVVFANRPDPNT-------------P-ME---ETV-RAMTHVINQGMAMYWGTSRWS 157 (327)
T ss_dssp SHHHHHHHHHHHHHHHTCSCEEEEEESSCCTTS-------------C-HH---HHH-HHHHHHHHTTSEEEEEEESCC
T ss_pred CHHHHHHHHHHHHHHhCCCccceEEEeCCCCCC-------------C-HH---HHH-HHHHHHHHcCCeeEEeecCCC
Confidence 677777777764 4589999999976421 111 1 11 223 345567778865 46788885
No 210
>3clm_A Transaldolase; YP_208650.1, structural genomics, joint cente structural genomics, JCSG, protein structure initiative, PS transferase; HET: MSE; 1.14A {Neisseria gonorrhoeae}
Probab=49.28 E-value=72 Score=31.35 Aligned_cols=89 Identities=20% Similarity=0.223 Sum_probs=53.0
Q ss_pred cEEEEEecCCC-C-CHHHHHHHHH---C-CCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecC
Q 012112 150 AEISMEMDPGT-F-DARKMEELMD---L-GVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISS 223 (471)
Q Consensus 150 ~eitiE~~P~~-l-~~e~l~~l~~---~-GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~G 223 (471)
-.+++|++|.. . +++.++.-++ . +=.+|-|-|=+ | .+-.+|++.+.+.||. +|+.+||.
T Consensus 103 G~VS~EVdprla~D~e~~i~eA~~L~~~i~r~nv~IKIPa-------------T-~eGi~A~~~L~~eGI~-vNvTLiFS 167 (352)
T 3clm_A 103 GFVSLEVSPELAKDAQGTVEEARRLHAAIARKNAMIKVPA-------------T-DAGIDALETLVSDGIS-VNLTLLFS 167 (352)
T ss_dssp CCEEEECCGGGTTCHHHHHHHHHHHHHHHCCTTEEEEEEC-------------S-HHHHHHHHHHHHTTCC-EEEEEECC
T ss_pred eeEEEEeccccCCCHHHHHHHHHHHHHhcCCCCEEEEeCC-------------C-HHHHHHHHHHHHCCCc-EEEEEecC
Confidence 38999998842 2 3333333222 2 22344443332 3 4567889999999997 99999998
Q ss_pred CCCCCHH---HHHHHHHHHHhCCCC------cEEEEeccc
Q 012112 224 LPHQTPQ---MWEESLRRTVGAQPK------HVSVYDLQV 254 (471)
Q Consensus 224 lPgqT~e---~~~~~l~~~~~l~p~------his~y~l~~ 254 (471)
+ .|..+ -+..-++...+.|.+ -||.|-=.+
T Consensus 168 ~-~Qa~a~aeA~lag~~~~~~aG~~~~~~as~iSpFVgRi 206 (352)
T 3clm_A 168 R-AQTLKAYAAYARGIAKRLAAGQSVAHIQVVASFFISRV 206 (352)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEEECHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHhcCCCcccCceEEecccchH
Confidence 6 34322 334444555557743 677776443
No 211
>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}
Probab=48.82 E-value=67 Score=30.99 Aligned_cols=67 Identities=13% Similarity=0.152 Sum_probs=41.9
Q ss_pred eeEEEEc---CCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCC
Q 012112 115 LETVFFG---GGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAF 184 (471)
Q Consensus 115 v~~i~fG---GGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~ 184 (471)
+-+++.= .|.||. +++.+.++++.|++..+. -+.+|.......-.++.++.+.+..-.-.|+.+=|.
T Consensus 48 ivHlHvRdp~dG~ps~-d~~~~~e~~~~IR~~~d~--iI~~TTgg~~~~~~eerla~~~~~~Pe~aSln~gs~ 117 (311)
T 3e02_A 48 MLHLHARDPLNGRPSQ-DPDLFMRFLPQLKERTDA--ILNITTGGGLGMSLDERLAPARAARPEVASMNMGSL 117 (311)
T ss_dssp EEEECEECTTTCCEEC-CHHHHTTTHHHHHHHCCC--EEEECSSCSTTCCHHHHHHHHHHHCCSEEEEECSCE
T ss_pred EEEEeecCCCCCCcCC-CHHHHHHHHHHHHHhCCc--EEEECCCCCCCCCHHHHHHHHHhcCCCeeeecCCCc
Confidence 4455553 488886 999999999999987532 223333333332245778887776656666665554
No 212
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=48.78 E-value=23 Score=36.78 Aligned_cols=63 Identities=11% Similarity=0.071 Sum_probs=41.6
Q ss_pred HHHHHHHHCCCCEEEEcc-C-----------CCCHHH--HHHcC--CC-CCHHHHHHHHHHHHHcCCCeeEeeeecCCCC
Q 012112 164 RKMEELMDLGVNRVSLGV-Q-----------AFQDEL--LKSCG--RA-HGLKEVYEAIEIVKLCGVENWSLDLISSLPH 226 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGv-Q-----------S~~d~~--L~~l~--R~-~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg 226 (471)
++|..|+++||+.|-|.. . |..+.- ...++ .. -+.+++.+.++.+++.|++ |-+|+++..=+
T Consensus 41 ~~LdyLk~LGvt~IwL~Pi~e~~~~~~~~~~~~~~~GY~~~~id~~p~~Gt~~dfk~Lv~~aH~~GI~-VilD~V~NHt~ 119 (527)
T 1gcy_A 41 QQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASALGGAGVK-VLYDVVPNHMN 119 (527)
T ss_dssp HHHHHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTTCSSSCSCSSSCCHHHHHHHHHHHHHTTCE-EEEEECCSBCC
T ss_pred HHHHHHHhcCCCEEEeCCccccccccccCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHCCCE-EEEEEeecCcC
Confidence 456666677777666542 1 110000 23344 33 3899999999999999998 99999998644
Q ss_pred C
Q 012112 227 Q 227 (471)
Q Consensus 227 q 227 (471)
.
T Consensus 120 ~ 120 (527)
T 1gcy_A 120 R 120 (527)
T ss_dssp T
T ss_pred C
Confidence 3
No 213
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=48.76 E-value=13 Score=37.24 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=43.4
Q ss_pred HHHHHHHHCCCCEEEEcc--CC-----CCHHHHHHcC-C-CCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCC
Q 012112 164 RKMEELMDLGVNRVSLGV--QA-----FQDELLKSCG-R-AHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQ 227 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGv--QS-----~~d~~L~~l~-R-~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgq 227 (471)
++|..|+++||+.|-|.. ++ ++..-...++ . --+.++..+.++.+++.|+. |-+|++++.=+.
T Consensus 25 ~~ldyl~~lGv~~i~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~lv~~~h~~Gi~-VilD~V~NH~~~ 96 (405)
T 1ht6_A 25 GKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQ-AIADIVINHRCA 96 (405)
T ss_dssp TTHHHHHHTTCCEEEECCCSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHHTTCE-EEEEECCSBCCC
T ss_pred HHHHHHHHcCCCEEEeCCCccCCCCCCCCccccccCCCccCCCHHHHHHHHHHHHHCCCE-EEEEECcCcccC
Confidence 456777777887776541 11 2222233344 3 34899999999999999998 999999986443
No 214
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=48.62 E-value=82 Score=28.81 Aligned_cols=84 Identities=7% Similarity=0.018 Sum_probs=54.2
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCe--eEeeee--cCCCC-------CCHHH
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVEN--WSLDLI--SSLPH-------QTPQM 231 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~--v~~DlI--~GlPg-------qT~e~ 231 (471)
.+.++.++++|++.|.+....... ......+.+++.+..+.++++|+.- +++..- +.+-. ++.+.
T Consensus 15 ~~~l~~~~~~G~~~iEl~~~~~~~----~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~h~~~~~~~~~~~~~~r~~~~~~ 90 (287)
T 2x7v_A 15 DRVPQDTVNIGGNSFQIFPHNARS----WSAKLPSDEAATKFKREMKKHGIDWENAFCHSGYLINLASPKDDIWQKSVEL 90 (287)
T ss_dssp GGHHHHHHHTTCSEEEECSCCCSS----SCCCCCCHHHHHHHHHHHHHHTCCGGGEEEECCTTCCTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCccc----ccccCCCHHHHHHHHHHHHHcCCCcceeEEecccccccCCCCHHHHHHHHHH
Confidence 578899999999999886543110 1112345677777778888899872 333221 22222 12456
Q ss_pred HHHHHHHHHhCCCCcEEEE
Q 012112 232 WEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 232 ~~~~l~~~~~l~p~his~y 250 (471)
+++.++.+.+++++.|.+.
T Consensus 91 ~~~~i~~A~~lG~~~v~~~ 109 (287)
T 2x7v_A 91 LKKEVEICRKLGIRYLNIH 109 (287)
T ss_dssp HHHHHHHHHHHTCCEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 7788888889999888664
No 215
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=48.59 E-value=69 Score=34.70 Aligned_cols=102 Identities=13% Similarity=0.220 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec--CCCCCHHHHHHH
Q 012112 92 SNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMD--PGTFDARKMEEL 169 (471)
Q Consensus 92 ~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~--P~~l~~e~l~~l 169 (471)
..|+-.+.+++.... ++.|++.+ |-.++.|..+.++++.+++.++ +..+.+-++ .+.-....+.++
T Consensus 260 ~e~~~~~a~~l~~~G--------a~~I~l~D-T~G~~~P~~v~~lV~~lk~~~p---~~~I~~H~Hnd~GlAvANslaAv 327 (718)
T 3bg3_A 260 LQYYMGLAEELVRAG--------THILCIKD-MAGLLKPTACTMLVSSLRDRFP---DLPLHIHTHDTSGAGVAAMLACA 327 (718)
T ss_dssp HHHHHHHHHHHHHHT--------CSEEEEEC-TTSCCCHHHHHHHHHHHHHHST---TCCEEEECCCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--------CCEEEEcC-cCCCcCHHHHHHHHHHHHHhCC---CCeEEEEECCCccHHHHHHHHHH
Confidence 456666667766542 57888874 8888999999999999999874 345666664 332345566655
Q ss_pred HHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 170 MDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 170 ~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
++|+++|.-.+-.+-. ..........+..++..|++
T Consensus 328 -eAGa~~VD~ti~GlGe--------rtGN~~lE~vv~~L~~~g~~ 363 (718)
T 3bg3_A 328 -QAGADVVDVAADSMSG--------MTSQPSMGALVACTRGTPLD 363 (718)
T ss_dssp -HTTCSEEEEBCGGGCS--------TTSCCBHHHHHHHHTTSTTC
T ss_pred -HhCCCEEEecCccccc--------ccCchhHHHHHHHHHhcCCC
Confidence 6899999887766433 33222333444444445654
No 216
>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*
Probab=48.52 E-value=57 Score=33.16 Aligned_cols=112 Identities=12% Similarity=0.162 Sum_probs=55.5
Q ss_pred eeEEEEcCC-C-CC--CCC-HHHHHHH---HHHHHHHcC-CCCCcEEEEEecCCCCCHHHHHHHHH--CCCCE-E-EEcc
Q 012112 115 LETVFFGGG-T-PS--LVP-PRFVSSI---LDTLTDKFG-LSLDAEISMEMDPGTFDARKMEELMD--LGVNR-V-SLGV 181 (471)
Q Consensus 115 v~~i~fGGG-T-ps--~l~-~~~l~~l---l~~l~~~~~-l~~~~eitiE~~P~~l~~e~l~~l~~--~Gvnr-v-siGv 181 (471)
.+-|-+||- | |. .++ .++++++ ++.|++.+. ...++.++|. +...+.++.--+ +|..- | ++.-
T Consensus 226 AdIIDIGgeSTrPGa~~Vs~~EE~~Rv~pvI~~l~~~~~~~~~~vpISID----T~~~~VaeaAL~~~aGa~i~INDVsg 301 (442)
T 3mcm_A 226 AEIIDIGAESTKPDAKPISIEEEFNKLNEFLEYFKSQLANLIYKPLVSID----TRKLEVMQKILAKHHDIIWMINDVEC 301 (442)
T ss_dssp CSEEEEECCCCCC----CCHHHHHHHHHHHHHHHHHHTTTCSSCCEEEEE----CCCHHHHHHHHHHHGGGCCEEEECCC
T ss_pred CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCeEEEe----CCCHHHHHHHHhhCCCCCEEEEcCCC
Confidence 456678862 2 21 123 3567776 445544211 1113456655 566777777766 77554 2 2222
Q ss_pred CCCCHHHHHHcC-----------CCC--C-------------HHHHHHHHHHHHHcCC--CeeEeeeecCCCCCCHHHH
Q 012112 182 QAFQDELLKSCG-----------RAH--G-------------LKEVYEAIEIVKLCGV--ENWSLDLISSLPHQTPQMW 232 (471)
Q Consensus 182 QS~~d~~L~~l~-----------R~~--t-------------~~~~~~ai~~~~~~G~--~~v~~DlI~GlPgqT~e~~ 232 (471)
..++++++.+. |+. + .+...+.++.+.++|+ ++|-+|--+|+ |.|.++=
T Consensus 302 -~~d~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~y~dvv~ev~~~l~~~i~~a~~aGI~~~~IilDPGiGF-~Kt~~~n 378 (442)
T 3mcm_A 302 -NNIEQKAQLIAKYNKKYVIIHNLGITDRNQYLDKENAIDNVCDYIEQKKQILLKHGIAQQNIYFDIGFGF-GKKSDTA 378 (442)
T ss_dssp -TTHHHHHHHHHHHTCEEEEECC----------------CTHHHHHHHHHHHHHHHTCCGGGEEEECCCC---------
T ss_pred -CCChHHHHHHHHhCCeEEEECCCCCCccccccCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCC-CCCHHHH
Confidence 35666665431 111 1 2344566778888888 56888887787 5555443
No 217
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=48.47 E-value=39 Score=27.10 Aligned_cols=47 Identities=6% Similarity=-0.118 Sum_probs=34.4
Q ss_pred HHHHHhccccCCCCHhhHHHHhCCC---hHHHHHHHHHHHHHCCCEEEec
Q 012112 373 DVLMLSFRTARGVDLKSFGETFGCS---LVHTLCKAYKPYIESGHVICLD 419 (471)
Q Consensus 373 e~~~~~Lr~~~gi~~~~~~~~fg~~---~~~~~~~~~~~~~~~gll~~~~ 419 (471)
..+|.-|....++...++.++++.+ -...+...+++|++.|||....
T Consensus 13 ~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 13 WDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 3445555556789999999988742 1345678899999999998754
No 218
>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius}
Probab=48.21 E-value=23 Score=34.68 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=36.4
Q ss_pred HHHHHHHHCCCCEEEEccCCCCHHHHH-----HcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecC
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQDELLK-----SCGRAHGLKEVYEAIEIVKLCGVENWSLDLISS 223 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d~~L~-----~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~G 223 (471)
+.|+.|++.|+|.|+|-+--+.+..-. .-++..+.+.+.++++.|++.|+. |-++..+-
T Consensus 57 ~~l~~lk~~g~N~VrL~v~~~~~~~~~~~~~~~~~~t~~~~~v~~~~~~Ak~~GL~-V~l~p~i~ 120 (343)
T 3civ_A 57 ASMRALAEQPFNWVTLAFAGLMEHPGDPAIAYGPPVTVSDDEIASMAELAHALGLK-VCLKPTVN 120 (343)
T ss_dssp HHHHHHHHSSCSEEEEEEEEEESSTTCCCCBCSTTTBCCHHHHHHHHHHHHHTTCE-EEEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEeeecCCCCCCCcccccCCCCCCHHHHHHHHHHHHHCCCE-EEEEEEee
Confidence 666677777777776642211000000 112234788999999999999997 77765553
No 219
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=48.17 E-value=41 Score=30.83 Aligned_cols=82 Identities=16% Similarity=0.058 Sum_probs=35.3
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeec--CCCC--C----CHHHHHH
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLIS--SLPH--Q----TPQMWEE 234 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~--GlPg--q----T~e~~~~ 234 (471)
++.++.++++|++.|.+-..+-. .......+.+++.+..+.+++.|+..+++..-+ .+-. + +.+.+++
T Consensus 17 ~~~~~~~~~~G~~~vEl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~gl~~~~~h~~~~~~l~s~~~~r~~~~~~~~~ 92 (270)
T 3aam_A 17 AGAVEEATALGLTAFQIFAKSPR----SWRPRALSPAEVEAFRALREASGGLPAVIHASYLVNLGAEGELWEKSVASLAD 92 (270)
T ss_dssp HHHHHHHHHHTCSCEEEESSCTT----CCSCCCCCHHHHHHHHHHHHHTTCCCEEEECCTTCCTTCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC----cCcCCCCCHHHHHHHHHHHHHcCCceEEEecCcccCCCCCHHHHHHHHHHHHH
Confidence 34555555666665555332210 001112234445555555556665224332211 1110 1 2344555
Q ss_pred HHHHHHhCCCCcEE
Q 012112 235 SLRRTVGAQPKHVS 248 (471)
Q Consensus 235 ~l~~~~~l~p~his 248 (471)
.++.+.+++++.|.
T Consensus 93 ~i~~a~~lGa~~vv 106 (270)
T 3aam_A 93 DLEKAALLGVEYVV 106 (270)
T ss_dssp HHHHHHHHTCCEEE
T ss_pred HHHHHHHcCCCEEE
Confidence 55556666665553
No 220
>2o9p_A Beta-glucosidase B; family 1 glycoside hydrolase; 2.10A {Paenibacillus polymyxa} PDB: 2o9t_A* 2z1s_A* 2jie_A* 2o9r_A*
Probab=47.97 E-value=20 Score=36.69 Aligned_cols=92 Identities=15% Similarity=0.179 Sum_probs=59.7
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCH---HHHHHHHHHHHHcCCCeeEeeee-cCCCC-----------C
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGL---KEVYEAIEIVKLCGVENWSLDLI-SSLPH-----------Q 227 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~---~~~~~ai~~~~~~G~~~v~~DlI-~GlPg-----------q 227 (471)
+|.++.|+++|++.+.+++ |- .++.-.-| ..+. +-..+.++.+++.|++ +-++|- +++|- +
T Consensus 70 ~eDi~lm~~~G~~~~R~si-sW-sRi~P~~g-~~n~~Gl~~y~~lid~l~~~GI~-p~vtL~H~d~P~~L~~~ggw~~r~ 145 (454)
T 2o9p_A 70 KEDVQLMKQLGFLHYRFSV-AW-PRIMPAAG-IINEEGLLFYEHLLDEIELAGLI-PMLTLYHWDLPQWIEDEGGWTQRE 145 (454)
T ss_dssp HHHHHHHHTTTCCEEEEEC-CH-HHHCSSTT-CCCHHHHHHHHHHHHHHHHHTCE-EEEEEESSCCBHHHHHTTGGGSTH
T ss_pred HHHHHHHHhcCCceEEecc-cH-HhhCCCCC-CcCHHHHHHHHHHHHHHHHCCCE-EEEEecCCCccHHHHhcCCCCCcc
Confidence 6889999999999888887 32 23332212 2343 5578889999999997 777775 67772 2
Q ss_pred CHHHHHHHHHHHHhCCCCcEEEEeccccCCC
Q 012112 228 TPQMWEESLRRTVGAQPKHVSVYDLQVEQGT 258 (471)
Q Consensus 228 T~e~~~~~l~~~~~l~p~his~y~l~~~pgT 258 (471)
+.+.+.+-.+.+.+.=-++|..+...-||+.
T Consensus 146 ~~~~F~~ya~~~~~~~gd~V~~W~t~NEp~~ 176 (454)
T 2o9p_A 146 TIQHFKTYASVIMDRFGERINWWNTINEPYC 176 (454)
T ss_dssp HHHHHHHHHHHHHHHSSSSCSEEEEEECHHH
T ss_pred hHHHHHHHHHHHHHHhCCcceeEEEecCcce
Confidence 4555666555555432355666655556654
No 221
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=47.90 E-value=7 Score=36.34 Aligned_cols=92 Identities=13% Similarity=0.204 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHH
Q 012112 129 PPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIV 208 (471)
Q Consensus 129 ~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~ 208 (471)
..+.+..+++.+++ .++++|+-++| +.+.++.-++.|.++|.+=-..+-+.. ....+....+.+.++.+.+
T Consensus 112 ~~~~l~~~i~~L~~-----~GIrVSLFIDp---d~~qi~aA~~~GA~~IELhTG~Ya~a~-~~~~~~~el~~i~~aa~~A 182 (243)
T 1m5w_A 112 QRDKMRDACKRLAD-----AGIQVSLFIDA---DEEQIKAAAEVGAPFIEIHTGCYADAK-TDAEQAQELARIAKAATFA 182 (243)
T ss_dssp GHHHHHHHHHHHHH-----TTCEEEEEECS---CHHHHHHHHHTTCSEEEEECHHHHHCC-SHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-----CCCEEEEEeCC---CHHHHHHHHHhCcCEEEEechhhhcCC-CchhHHHHHHHHHHHHHHH
Confidence 45677777777775 46789999998 699999999999999988655443321 0000112456677888889
Q ss_pred HHcCCCeeEeeeecCCCCCCHHHH
Q 012112 209 KLCGVENWSLDLISSLPHQTPQMW 232 (471)
Q Consensus 209 ~~~G~~~v~~DlI~GlPgqT~e~~ 232 (471)
++.|+. ||. ==||--++...+
T Consensus 183 ~~lGL~-VnA--GHgL~y~Nv~~i 203 (243)
T 1m5w_A 183 ASLGLK-VNA--GHGLTYHNVKAI 203 (243)
T ss_dssp HHTTCE-EEE--ESSCCTTTHHHH
T ss_pred HHcCCE-Eec--CCCCCHHHHHHH
Confidence 999986 554 456666665554
No 222
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=47.48 E-value=82 Score=28.89 Aligned_cols=77 Identities=8% Similarity=0.028 Sum_probs=53.1
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeee----cCCCCCC-------HHH
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLI----SSLPHQT-------PQM 231 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI----~GlPgqT-------~e~ 231 (471)
++.++.++++|++.|.+........ ...++.+..+.++++|+. +..-.- ..+-+.. .+.
T Consensus 20 ~~~l~~~~~~G~~~vEl~~~~~~~~---------~~~~~~~~~~~l~~~gl~-~~~~~~~~~~~~l~~~d~~~r~~~~~~ 89 (290)
T 2qul_A 20 PATAKRIAGLGFDLMEISLGEFHNL---------SDAKKRELKAVADDLGLT-VMCCIGLKSEYDFASPDKSVRDAGTEY 89 (290)
T ss_dssp HHHHHHHHHTTCSEEEEESTTGGGS---------CHHHHHHHHHHHHHHTCE-EEEEEEECGGGCTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEecCCcccc---------chhhHHHHHHHHHHcCCc-eEEecCCCCCCCCCCCCHHHHHHHHHH
Confidence 5889999999999999987643221 135666777788999997 444211 1121112 367
Q ss_pred HHHHHHHHHhCCCCcEEE
Q 012112 232 WEESLRRTVGAQPKHVSV 249 (471)
Q Consensus 232 ~~~~l~~~~~l~p~his~ 249 (471)
+++.++.+.+++++.|.+
T Consensus 90 ~~~~i~~a~~lG~~~v~~ 107 (290)
T 2qul_A 90 VKRLLDDCHLLGAPVFAG 107 (290)
T ss_dssp HHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHcCCCEEEe
Confidence 888999999999998875
No 223
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=47.36 E-value=21 Score=36.02 Aligned_cols=85 Identities=15% Similarity=0.137 Sum_probs=53.2
Q ss_pred HHHHHHHHCCCCEEEEcc--CC----CCHHHHHHcCCC-CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCC--------
Q 012112 164 RKMEELMDLGVNRVSLGV--QA----FQDELLKSCGRA-HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQT-------- 228 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGv--QS----~~d~~L~~l~R~-~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT-------- 228 (471)
++|..|+++||+-|-|.. +| ++..-...+... -+.+++.+.++.+++.|++ |-+|+++..-++.
T Consensus 40 ~~Ldyl~~LGv~~i~l~Pi~~~~~~~y~~~dy~~idp~~Gt~~d~~~lv~~ah~~Gi~-vilD~V~NH~s~~~wF~~q~~ 118 (424)
T 2dh2_A 40 GRLDYLSSLKVKGLVLGPIHKNQKDDVAQTDLLQIDPNFGSKEDFDSLLQSAKKKSIR-VILDLTPNYRGENSWFSTQVD 118 (424)
T ss_dssp TTHHHHHHTTCSEEEECCCEEECTTCSTTEEEEEECGGGCCHHHHHHHHHHHHHTTCE-EEEECCTTTTSSSTTCSSCHH
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCCCCcccccccCccCCCHHHHHHHHHHHHHCCCE-EEEEECCCcCCCcccccccCH
Confidence 355666666777665541 11 111001112222 3789999999999999998 9999999876532
Q ss_pred --HHHHHHHHHHHHhCCCCcEEE
Q 012112 229 --PQMWEESLRRTVGAQPKHVSV 249 (471)
Q Consensus 229 --~e~~~~~l~~~~~l~p~his~ 249 (471)
.+.+.+.+++-++.++|-+.+
T Consensus 119 ~Vr~~~~~~~~~Wl~~gvDGfRl 141 (424)
T 2dh2_A 119 TVATKVKDALEFWLQAGVDGFQV 141 (424)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCEEEE
Confidence 344556666666677775544
No 224
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=47.15 E-value=17 Score=36.60 Aligned_cols=70 Identities=20% Similarity=0.143 Sum_probs=45.7
Q ss_pred HHHHHHHHCCCCEEEEcc--CCC-----CHHHHHHcCCC-CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHH
Q 012112 164 RKMEELMDLGVNRVSLGV--QAF-----QDELLKSCGRA-HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEE 234 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGv--QS~-----~d~~L~~l~R~-~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~ 234 (471)
++|..|+++||+.|-|.. +|. +..-...+... -|.+++.+.++.+++.|+. |-+|+++..-+..-.-+.+
T Consensus 27 ~~LdyL~~LGv~~I~L~Pi~~~~~~~GY~~~dy~~idp~~Gt~~df~~lv~~aH~~Gi~-VilD~V~NH~~~~~~~f~~ 104 (441)
T 1lwj_A 27 NAVSYLKELGIDFVWLMPVFSSISFHGYDVVDFYSFKAEYGSEREFKEMIEAFHDSGIK-VVLDLPIHHTGFLHTWFQK 104 (441)
T ss_dssp HTHHHHHHTTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCE-EEEEECTTBCCTTCHHHHH
T ss_pred HhhHHHHHcCCCEEEeCCCcCCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCE-EEEEeCCCcccCchHHHHH
Confidence 556777777777776542 221 11111123332 3789999999999999998 9999999876654333333
No 225
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=46.92 E-value=31 Score=25.82 Aligned_cols=46 Identities=4% Similarity=0.076 Sum_probs=37.2
Q ss_pred HHHHHhccccC---CCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEec
Q 012112 373 DVLMLSFRTAR---GVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLD 419 (471)
Q Consensus 373 e~~~~~Lr~~~---gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~ 419 (471)
+.|+.-|+... ++...+++++.|.+-. .+...|..|++.|+|...+
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~-tV~~~L~~L~~~G~I~~~g 65 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKK-EINRVLYSLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHH-HHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHH-HHHHHHHHHHHCCCEEecC
Confidence 44555666666 8999999999999864 6788999999999998654
No 226
>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A
Probab=46.92 E-value=28 Score=32.79 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=8.8
Q ss_pred HHHHHHHHHCCCCEEEE
Q 012112 163 ARKMEELMDLGVNRVSL 179 (471)
Q Consensus 163 ~e~l~~l~~~Gvnrvsi 179 (471)
.+.++.++++|++.|.+
T Consensus 21 ~~~l~~~~~~G~~~vEl 37 (303)
T 3aal_A 21 LAASEEAASYGANTFMI 37 (303)
T ss_dssp HHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 34455555555555555
No 227
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=46.87 E-value=95 Score=23.82 Aligned_cols=43 Identities=19% Similarity=0.174 Sum_probs=33.0
Q ss_pred HHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEec
Q 012112 375 LMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLD 419 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~ 419 (471)
++.-|. ..++...++.+..|.+-. .+...++.|.+.|++....
T Consensus 28 Il~~L~-~~~~~~~ela~~l~is~~-tvs~~L~~L~~~Glv~~~~ 70 (102)
T 3pqk_A 28 LVCTLV-EGEFSVGELEQQIGIGQP-TLSQQLGVLRESGIVETRR 70 (102)
T ss_dssp HHHHHH-TCCBCHHHHHHHHTCCTT-HHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHH-hCCCCHHHHHHHHCcCHH-HHHHHHHHHHHCCCeEEEE
Confidence 444443 356899999999998864 4677899999999998654
No 228
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=46.59 E-value=87 Score=28.60 Aligned_cols=85 Identities=7% Similarity=-0.028 Sum_probs=53.5
Q ss_pred CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCe--eEeee--ecCCCCC-------CHH
Q 012112 162 DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVEN--WSLDL--ISSLPHQ-------TPQ 230 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~--v~~Dl--I~GlPgq-------T~e 230 (471)
-++.++.++++|++.|.+...+... ......+.+++.+..+.++++|+.- +++.. .+.+... +.+
T Consensus 14 l~~~l~~~~~~G~~~vEl~~~~~~~----~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~l~~~~~~~r~~~~~ 89 (285)
T 1qtw_A 14 LANAAIRAAEIDATAFALFTKNQRQ----WRAAPLTTQTIDEFKAACEKYHYTSAQILPHDSYLINLGHPVTEALEKSRD 89 (285)
T ss_dssp HHHHHHHHHHTTCSEEECCSSCSSC----SSCCCCCHHHHHHHHHHHHHTTCCGGGBCCBCCTTCCTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEeeCCCCCc----CcCCCCCHHHHHHHHHHHHHcCCCceeEEecCCcccccCCCCHHHHHHHHH
Confidence 3578899999999998884332110 0112345677777788889999871 22221 1222121 245
Q ss_pred HHHHHHHHHHhCCCCcEEEE
Q 012112 231 MWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 231 ~~~~~l~~~~~l~p~his~y 250 (471)
.+++.++.+.+++++.|.+.
T Consensus 90 ~~~~~i~~A~~lGa~~v~~~ 109 (285)
T 1qtw_A 90 AFIDEMQRCEQLGLSLLNFH 109 (285)
T ss_dssp HHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEC
Confidence 67778888899999888654
No 229
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=46.41 E-value=2.1e+02 Score=27.66 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=70.8
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCC-C---HHHHHHHHHH
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQ-T---PQMWEESLRR 238 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgq-T---~e~~~~~l~~ 238 (471)
.+.++.|++.|+|-|-+.+-... .. .....+.+.++++.+.+.|+. |-+|+-- .+|. . .+.+.+-.+.
T Consensus 57 ~~~i~~lk~~G~N~VRip~~~~~-----~~-~~~~l~~ld~~v~~a~~~Giy-VIlDlH~-~~g~~~~~~~~~~~~~w~~ 128 (345)
T 3jug_A 57 STAIPAIAEQGANTIRIVLSDGG-----QW-EKDDIDTVREVIELAEQNKMV-AVVEVHD-ATGRDSRSDLDRAVDYWIE 128 (345)
T ss_dssp HHHHHHHHHTTCSEEEEEECCSS-----SS-CCCCHHHHHHHHHHHHTTTCE-EEEEECT-TTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEecCCC-----cc-CHHHHHHHHHHHHHHHHCCCE-EEEEecc-CCCCCcHHHHHHHHHHHHH
Confidence 46899999999996555543110 01 123578899999999999997 7788754 3443 2 2333333333
Q ss_pred HHh-C--CCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q 012112 239 TVG-A--QPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 239 ~~~-l--~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
+.+ + .++.| +|.+.=||... .+...-.+.+..+.+.+++.|..+
T Consensus 129 iA~ryk~~~~~V-i~el~NEP~~~------------~~~~~w~~~~~~~i~~IR~~dp~~ 175 (345)
T 3jug_A 129 MKDALIGKEDTV-IINIANEWYGS------------WDGAAWADGYIDVIPKLRDAGLTH 175 (345)
T ss_dssp THHHHTTCTTTE-EEECCTTCCCS------------SCHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHcCCCCeE-EEEecCCCCCC------------CCHHHHHHHHHHHHHHHHhhCCCC
Confidence 322 2 24677 59988887531 112334567788889999998876
No 230
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=46.29 E-value=35 Score=24.62 Aligned_cols=43 Identities=9% Similarity=0.042 Sum_probs=32.6
Q ss_pred HHHHhcccc-CCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEE
Q 012112 374 VLMLSFRTA-RGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVIC 417 (471)
Q Consensus 374 ~~~~~Lr~~-~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~ 417 (471)
.|+.-|... ..+...++++.+|.+- ..+...++.|.+.|+|..
T Consensus 14 ~IL~~L~~~~~~~s~~eLA~~lglsr-~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 14 KILQVLSDDGGPVAIFQLVKKCQVPK-KTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHCSCH-HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCcCH-HHHHHHHHHHHHCCcEec
Confidence 344344433 4699999999999995 456788999999999764
No 231
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=46.18 E-value=13 Score=31.27 Aligned_cols=73 Identities=11% Similarity=0.094 Sum_probs=42.2
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhC
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGA 242 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l 242 (471)
++.++..++.+.+-|.+..-. .++...+.+.++.+++.|..++.+ ++=|-|--..+++.+.-+.+.++
T Consensus 44 e~~v~~a~~~~~d~v~lS~~~-----------~~~~~~~~~~i~~l~~~g~~~i~v-~vGG~~~~~~~~~~~~~~~~~~~ 111 (137)
T 1ccw_A 44 ELFIKAAIETKADAILVSSLY-----------GQGEIDCKGLRQKCDEAGLEGILL-YVGGNIVVGKQHWPDVEKRFKDM 111 (137)
T ss_dssp HHHHHHHHHHTCSEEEEEECS-----------STHHHHHTTHHHHHHHTTCTTCEE-EEEESCSSSSCCHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCEEEEEecC-----------cCcHHHHHHHHHHHHhcCCCCCEE-EEECCCcCchHhhhhhHHHHHHC
Confidence 455566666666655554433 234556777888888888754443 33343311123455556677888
Q ss_pred CCCcE
Q 012112 243 QPKHV 247 (471)
Q Consensus 243 ~p~hi 247 (471)
+++.+
T Consensus 112 G~d~~ 116 (137)
T 1ccw_A 112 GYDRV 116 (137)
T ss_dssp TCSEE
T ss_pred CCCEE
Confidence 88744
No 232
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=45.98 E-value=43 Score=31.09 Aligned_cols=19 Identities=0% Similarity=-0.319 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhCCCCcEE
Q 012112 230 QMWEESLRRTVGAQPKHVS 248 (471)
Q Consensus 230 e~~~~~l~~~~~l~p~his 248 (471)
+.+++.++.+.+++++.|.
T Consensus 113 ~~~~~~i~~A~~lG~~~v~ 131 (290)
T 2zvr_A 113 ERVVKHTEVAGMFGALVII 131 (290)
T ss_dssp HHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEE
Confidence 4455566666666665543
No 233
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=45.73 E-value=82 Score=25.42 Aligned_cols=47 Identities=11% Similarity=0.036 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHHHHH
Q 012112 401 TLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNELISH 464 (471)
Q Consensus 401 ~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i~~~ 464 (471)
.+-+.|.+|+++|||....... ..+.+.-+.+|| ++|.........+
T Consensus 46 tlY~~L~rLe~~GlI~~~~~~~----------------~~g~~rk~Y~LT-~~G~~~l~~~~~~ 92 (117)
T 4esf_A 46 TVYTILVRLEKKKLVNIEKKPS----------------DMGPPRKFYSLN-EAGRQELELFWKK 92 (117)
T ss_dssp HHHHHHHHHHHTTCEEEEEEC---------------------CEEEEEEC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEeecC----------------CCCCCceEEEEC-HHHHHHHHHHHHH
Confidence 4668899999999998643100 001122367997 9999998876544
No 234
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=45.22 E-value=39 Score=31.04 Aligned_cols=65 Identities=8% Similarity=0.084 Sum_probs=39.2
Q ss_pred HHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHH
Q 012112 207 IVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASS 286 (471)
Q Consensus 207 ~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~ 286 (471)
+|++.|.. -..|. -+-.+.+.+.+++|.++++.++++|.++.+- +++ +.++...++....+
T Consensus 20 wAk~rgl~-----r~~GH-~~G~~~~~~i~~~c~~lGI~~lTlYaFStEN----w~R---------p~~EV~~Lm~L~~~ 80 (225)
T 3ugs_B 20 WARAKGFL-----AKLGY-SQGVKTMQKLMEVCMEENISNLSLFAFSTEN----WKR---------PKDEIDFIFELLDR 80 (225)
T ss_dssp -------------------CHHHHHHHHHHHHHHHTTCCEEEEEEEESGG----GGS---------CHHHHHHHHHHHHH
T ss_pred HHHHCCCC-----HHHHH-HHHHHHHHHHHHHHHHcCCCEEEEEEEcccc----cCC---------CHHHHHHHHHHHHH
Confidence 45555554 23343 4557899999999999999999999998763 332 34555666777777
Q ss_pred HHHH
Q 012112 287 MLSS 290 (471)
Q Consensus 287 ~L~~ 290 (471)
.|.+
T Consensus 81 ~l~~ 84 (225)
T 3ugs_B 81 CLDE 84 (225)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 235
>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400}
Probab=45.02 E-value=27 Score=33.83 Aligned_cols=66 Identities=11% Similarity=0.130 Sum_probs=42.3
Q ss_pred eeEEEEc---CCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCC
Q 012112 115 LETVFFG---GGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQA 183 (471)
Q Consensus 115 v~~i~fG---GGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS 183 (471)
+-+++.= .|.||. +++.+.++++.|++..+. -+.+|.......-.++.++.+.+..-.-.|+.+=|
T Consensus 48 ivHlHvRdp~dG~ps~-d~~~~~e~~~~IR~~~d~--iI~~TTgg~~~~~~eerla~~~~~~Pe~aSln~gs 116 (311)
T 3e49_A 48 VIHLHARDPRDGRPTQ-DPAAFAEFLPRIKSNTDA--VINLTTGGSPHMTVEERLRPATHYMPELASLNMGS 116 (311)
T ss_dssp EEEECEECTTTCCEEC-CHHHHTTHHHHHHHHCCC--EEEECSCSCTTSCHHHHHHHHHHHCCSEEEEECSC
T ss_pred EEEEeecCCCCCCcCC-CHHHHHHHHHHHHHhCCc--EEEECCCCCCCCCHHHHHHHHHhcCCCeeeecCCC
Confidence 4455553 488886 999999999999987532 22333333333224577888877666666766656
No 236
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating, potassium channel, KV1.2, gating charges, no analysis, ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Probab=44.80 E-value=86 Score=30.62 Aligned_cols=58 Identities=16% Similarity=0.084 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHH-HhCCCCcEEEEecccc-CCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCce-eccccccC
Q 012112 228 TPQMWEESLRRT-VGAQPKHVSVYDLQVE-QGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRH-YEISSYGE 303 (471)
Q Consensus 228 T~e~~~~~l~~~-~~l~p~his~y~l~~~-pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~-yeis~fa~ 303 (471)
+.+.+.+.++.- .+|+.|+|-+|.+.-. +.+ +.+ +.+ .+.+.|.+.|..+ +.+|||..
T Consensus 132 s~~~i~~~~e~SL~rLg~dyiDl~~lH~pd~~~--------------~~~---e~~-~al~~l~~~Gkir~iGvSn~~~ 192 (367)
T 3lut_A 132 SRKHIIEGLKASLERLQLEYVDVVFANRPDPNT--------------PME---ETV-RAMTHVINQGMAMYWGTSRWSS 192 (367)
T ss_dssp CHHHHHHHHHHHHHHHTCSCEEEEEESSCCTTS--------------CHH---HHH-HHHHHHHHTTSEEEEEEESCCH
T ss_pred CHHHHHHHHHHHHHHhCCCccceEEecCCCCCC--------------CHH---HHH-HHHHHHHHcCCeeEEEecCCCH
Confidence 567777777754 4578999999976421 111 111 222 3456677788664 67888853
No 237
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM glucanase, carbohydrate metabolism, cellulose degradation, glycosidase; HET: BTB; 2.10A {Clostridium cellulovorans}
Probab=44.47 E-value=6.3 Score=40.98 Aligned_cols=124 Identities=10% Similarity=0.015 Sum_probs=69.3
Q ss_pred CCCHHHHHHHHHCCCCEEEEccC--CCCHHHHHHcCCCC---CHHHHHHHHHHHHHcCCCeeEeeeecCCCC--------
Q 012112 160 TFDARKMEELMDLGVNRVSLGVQ--AFQDELLKSCGRAH---GLKEVYEAIEIVKLCGVENWSLDLISSLPH-------- 226 (471)
Q Consensus 160 ~l~~e~l~~l~~~GvnrvsiGvQ--S~~d~~L~~l~R~~---t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg-------- 226 (471)
.++++.++.|+++|+|-|-|.|. .+-+.. ..-.. ..+.+.++|+.++++|+. |-+|+- ..++
T Consensus 45 ~~t~~di~~i~~~G~N~vRipi~w~~~~~~~---~~~~~~~~~l~~~d~vv~~a~~~Gi~-vildlH-~~~~w~~~~~~~ 119 (515)
T 3icg_A 45 MTTHAMINKIKEAGFNTLRLPVTWDGHMGAA---PEYTIDQTWMKRVEEIANYAFDNDMY-VIINLH-HENEWLKPFYAN 119 (515)
T ss_dssp CCCHHHHHHHHHHTCCEEEECCCCTTSBCCT---TTCCBCHHHHHHHHHHHHHHHTTTCE-EEEECC-SCTTTCCCSGGG
T ss_pred cCCHHHHHHHHHCCCCEEEEccchHHhCCCC---CCCccCHHHHHHHHHHHHHHHHCCCE-EEEecC-CCCccccccccc
Confidence 46899999999999996555443 211100 00001 146788899999999997 888874 3332
Q ss_pred --CCHHHHHHHHHHHH-hCCC-CcEEEEeccccCCChhhhcccCCCCCCCCH---HHHHHHHHHHHHHHHHCC
Q 012112 227 --QTPQMWEESLRRTV-GAQP-KHVSVYDLQVEQGTKFGILYTPGEFPLPTE---TQSANFYRMASSMLSSAG 292 (471)
Q Consensus 227 --qT~e~~~~~l~~~~-~l~p-~his~y~l~~~pgT~l~~~~~~g~~~~p~~---~~~~~~~~~~~~~L~~~G 292 (471)
++.+.+.+-.+.+. +++= +.+-.|.+.=||.-.-.. ..+...+. +...+.++.+.+.+++.|
T Consensus 120 ~~~~~~~~~~~w~~ia~~f~~~~~~v~~el~NEP~~~~~~----~~W~~~~~~~~~~l~~~~~~~v~aIRa~g 188 (515)
T 3icg_A 120 EAQVKAQLTKVWTQIANNFKKYGDHLIFETMNEPRPVGAS----LQWTGGSYENREVVNRYNLTAVNAIRATG 188 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCTTEEEECCSCCCCCCGG----GTTSCCCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCCeEEEEeccCCCCCCcc----cccCCCchhHHHHHHHHHHHHHHHHHhhC
Confidence 12333444444443 3331 234578887777532100 01111122 334456788888888875
No 238
>3tkf_A Transaldolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel/TIM barrel; HET: I22 EPE; 1.50A {Francisella tularensis subsp} PDB: 3te9_A* 3upb_A* 3tk7_A* 3tno_A* 4e0c_A 3igx_A
Probab=43.90 E-value=80 Score=30.92 Aligned_cols=136 Identities=20% Similarity=0.318 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHcC-----CCCCcEEEEEecCC-CCCH--------HHHHHHHHCCCC--EEEEccCCCCHHHHHHcC
Q 012112 130 PRFVSSILDTLTDKFG-----LSLDAEISMEMDPG-TFDA--------RKMEELMDLGVN--RVSLGVQAFQDELLKSCG 193 (471)
Q Consensus 130 ~~~l~~ll~~l~~~~~-----l~~~~eitiE~~P~-~l~~--------e~l~~l~~~Gvn--rvsiGvQS~~d~~L~~l~ 193 (471)
.+++...++.+.-.|+ . .+-.+++|++|. ..+. +..+.+.+.|++ +|-|-|=+
T Consensus 94 ~~~v~~a~D~l~v~~g~ei~~~-v~G~VS~EV~~~ls~d~e~~i~eA~~l~~l~~~~gi~~~nv~IKIP~---------- 162 (345)
T 3tkf_A 94 DDLVKEIAIEILVSFGIKILDV-IEGKVSSEVDARVSFNSATTIDYAKRIIARYESNGIPKDRVLIMIAA---------- 162 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-CSSCEEEECCGGGTTCHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEC----------
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCCCEEEEEcCCccCCHHHHHHHHHHHHHHhhhcCCCCCcEEEEeCC----------
Confidence 4566666776665552 2 234899999985 2232 234444556776 57665543
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCC--CCCC
Q 012112 194 RAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPG--EFPL 271 (471)
Q Consensus 194 R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g--~~~~ 271 (471)
|. +-++|++.+.+.|+. +|+.+||.+ . -...+.+.++.-||.|-=.+.. .++. ..| .+..
T Consensus 163 ---T~-eGi~A~~~L~~eGI~-vN~TliFS~-~--------Qa~~aAeAGa~~ISPFVGRidD---~~~~-~~~~~~~~~ 224 (345)
T 3tkf_A 163 ---TW-EGIKAAKLLQKEGIN-CNLTLIFDK-A--------QAKACAEAGVYLVSPFVGRITD---WQMQ-QNNLKTFPA 224 (345)
T ss_dssp ---SH-HHHHHHHHHHHTTCC-EEEEEECCH-H--------HHHHHHHTTCSEEEEBSHHHHH---HHHH-HTTCSSCCC
T ss_pred ---CH-HHHHHHHHHHHCCCc-EEEEEeCCH-H--------HHHHHHHcCCcEEEeecchHHH---Hhhh-ccccccccc
Confidence 33 457888999999997 999999975 1 1234556788888887643321 0000 011 1111
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCc
Q 012112 272 PTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 272 p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
+.++.-...-..+.++.++.||.
T Consensus 225 ~~~~~Gv~~v~~i~~~yk~~g~~ 247 (345)
T 3tkf_A 225 IADDDGVNSVKAIYKLYKSHGFK 247 (345)
T ss_dssp GGGCHHHHHHHHHHHHHHHHTCC
T ss_pred cccCCHHHHHHHHHHHHHHcCCC
Confidence 22223344455566666777774
No 239
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=43.82 E-value=1.6e+02 Score=29.72 Aligned_cols=103 Identities=15% Similarity=0.117 Sum_probs=57.5
Q ss_pred HHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCC
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQ 243 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~ 243 (471)
+.++.|.++||..|.+|.=..+ .+-.++++.+.+.+.. ..+ +++---+. ++++.+.+.+
T Consensus 65 ~Ia~~L~~~Gv~~IEvG~P~as-------------p~d~~~~~~i~~~~~~-~~v---~~~~r~~~----~di~~A~~aG 123 (423)
T 3ivs_A 65 QIAKALDNFGVDYIELTSPVAS-------------EQSRQDCEAICKLGLK-CKI---LTHIRCHM----DDARVAVETG 123 (423)
T ss_dssp HHHHHHHHHTCSEEEECCTTSC-------------HHHHHHHHHHHTSCCS-SEE---EEEEESCH----HHHHHHHHTT
T ss_pred HHHHHHHHcCCCEEEEeecccC-------------HHHHHHHHHHHhcCCC-CEE---EEeeccCh----hhHHHHHHcC
Confidence 5566777889999999963322 2334456666666654 221 11111123 3567788889
Q ss_pred CCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q 012112 244 PKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 244 p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
++.|.+|.- -+..+.+..-+ .+.++..++...+.++.++.|...
T Consensus 124 ~~~V~i~~s----~Sd~~~~~~l~----~s~~e~l~~~~~~v~~ak~~G~~V 167 (423)
T 3ivs_A 124 VDGVDVVIG----TSQYLRKYSHG----KDMTYIIDSATEVINFVKSKGIEV 167 (423)
T ss_dssp CSEEEEEEE----C-----------------CHHHHHHHHHHHHHHTTTCEE
T ss_pred CCEEEEEee----ccHHHHHHHcC----CCHHHHHHHHHHHHHHHHHCCCEE
Confidence 998888742 22333222111 234566777778888888999764
No 240
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=43.45 E-value=1e+02 Score=28.21 Aligned_cols=139 Identities=11% Similarity=0.161 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhccCCCCCCCCeeEEEEcCCCC-CCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCC--C--HHHHHH
Q 012112 94 YIQLLCREIIATKPGHKTSPPLETVFFGGGTP-SLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTF--D--ARKMEE 168 (471)
Q Consensus 94 yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTp-s~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l--~--~e~l~~ 168 (471)
-++.+.++|+..++.. ++-+-||-=|+ .-++.+.+++|++... +.++|+----+.+ . .+.++.
T Consensus 74 E~~~M~~Di~~~~~~G-----adGvV~G~Lt~dg~iD~~~~~~Li~~a~-------~~~vTFHRAFD~~~~~d~~~ale~ 141 (224)
T 2bdq_A 74 ELRIMEEDILRAVELE-----SDALVLGILTSNNHIDTEAIEQLLPATQ-------GLPLVFHMAFDVIPKSDQKKSIDQ 141 (224)
T ss_dssp HHHHHHHHHHHHHHTT-----CSEEEECCBCTTSSBCHHHHHHHHHHHT-------TCCEEECGGGGGSCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-----CCEEEEeeECCCCCcCHHHHHHHHHHhC-------CCeEEEECchhccCCcCHHHHHHH
Confidence 4677788888776542 67888985554 3367788888887664 2467876433322 1 467899
Q ss_pred HHHCCCCEEE-EccCCCCHHHHHHcCCCCCHHHHHHHHHHH-HHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCc
Q 012112 169 LMDLGVNRVS-LGVQAFQDELLKSCGRAHGLKEVYEAIEIV-KLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKH 246 (471)
Q Consensus 169 l~~~Gvnrvs-iGvQS~~d~~L~~l~R~~t~~~~~~ai~~~-~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~h 246 (471)
|.+.||+||- -|-+.- .+..+-...++.+ +.++-. +.+|.|- |-|.+.+.+-+ .+.+++.
T Consensus 142 L~~lGv~rILTSG~~~~-----------~~a~~g~~~L~~Lv~~a~~r---i~Im~Gg-GV~~~Ni~~l~---~~tGv~e 203 (224)
T 2bdq_A 142 LVALGFTRILLHGSSNG-----------EPIIENIKHIKALVEYANNR---IEIMVGG-GVTAENYQYIC---QETGVKQ 203 (224)
T ss_dssp HHHTTCCEEEECSCSSC-----------CCGGGGHHHHHHHHHHHTTS---SEEEECS-SCCTTTHHHHH---HHHTCCE
T ss_pred HHHcCCCEEECCCCCCC-----------CcHHHHHHHHHHHHHhhCCC---eEEEeCC-CCCHHHHHHHH---HhhCCCE
Confidence 9999999983 343321 1122222222222 223222 5567754 55655555432 2457777
Q ss_pred EEEEeccccCCChhhh
Q 012112 247 VSVYDLQVEQGTKFGI 262 (471)
Q Consensus 247 is~y~l~~~pgT~l~~ 262 (471)
+..-.....+|.|+..
T Consensus 204 ~H~s~i~~~~~~~~~~ 219 (224)
T 2bdq_A 204 AHGTRITQMAGDPLEH 219 (224)
T ss_dssp EEETTCC---------
T ss_pred EccccccCCCCCcchh
Confidence 7766777777887653
No 241
>3apg_A Beta-glucosidase; TIM barrel, hydrolase, sugar binding, hydrolysis; 2.35A {Pyrococcus furiosus}
Probab=43.30 E-value=15 Score=37.86 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=44.4
Q ss_pred HHHHHHHHHCCCCEEEEccC------------CCC---------------HHHHHHcCCCCC---HHHHHHHHHHHHHcC
Q 012112 163 ARKMEELMDLGVNRVSLGVQ------------AFQ---------------DELLKSCGRAHG---LKEVYEAIEIVKLCG 212 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQ------------S~~---------------d~~L~~l~R~~t---~~~~~~ai~~~~~~G 212 (471)
++.++.|+++|+|.+.+|++ .+| ++.|+.|.+-.+ .+-..+.++.+++.|
T Consensus 63 ~eDi~l~~~lG~~~~R~si~WsRI~P~~g~~~~~n~~~~~~~~~~~~~~~~~~l~~l~~~an~~g~~~Y~~~id~l~~~G 142 (473)
T 3apg_A 63 KQDHDIAEKLGMDCIRGGIEWARIFPKPTFDVKVDVEKDEEGNIISVDVPESTIKELEKIANMEALEHYRKIYSDWKERG 142 (473)
T ss_dssp HHHHHHHHHTTCCEEEEECCHHHHCCSCCTTSCCEEEECTTSCEEEEECCHHHHHHHHHHSCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCCEEEEecchhhccccCCCCCCcccccccccccccccchhhHHHHHHhhhhHHHHHHHHHHHHHHHHCC
Confidence 68899999999998888872 223 445555544433 556688999999999
Q ss_pred CCeeEeeee-cCCC
Q 012112 213 VENWSLDLI-SSLP 225 (471)
Q Consensus 213 ~~~v~~DlI-~GlP 225 (471)
++ +-+.|- +.+|
T Consensus 143 i~-pivtL~H~~lP 155 (473)
T 3apg_A 143 KT-FILNLYHWPLP 155 (473)
T ss_dssp CE-EEEESCCSCCC
T ss_pred CE-EEEEeCCCCCC
Confidence 97 666664 5566
No 242
>3ayr_A Endoglucanase; TIM barrel, hydrolase, carbohydrate/sugar binding; 2.00A {Piromyces rhizinflatus} PDB: 3ays_A*
Probab=43.15 E-value=30 Score=33.98 Aligned_cols=123 Identities=16% Similarity=0.106 Sum_probs=70.3
Q ss_pred CCCHHHHHHHHHCCCCEEEEccC--CCCHHHHHHcCCCC--C---HHHHHHHHHHHHHcCCCeeEeeeecCC----CCCC
Q 012112 160 TFDARKMEELMDLGVNRVSLGVQ--AFQDELLKSCGRAH--G---LKEVYEAIEIVKLCGVENWSLDLISSL----PHQT 228 (471)
Q Consensus 160 ~l~~e~l~~l~~~GvnrvsiGvQ--S~~d~~L~~l~R~~--t---~~~~~~ai~~~~~~G~~~v~~DlI~Gl----PgqT 228 (471)
.++++.++.|+++|+|-|-|.|. .+-+. +... + .+.+.++|+.+++.|+. |-+|+---- .++.
T Consensus 62 ~~~~~di~~i~~~G~N~vRipi~w~~~~~~-----~~~~~~~~~~l~~~~~vv~~a~~~Gi~-vildlH~~~~~~~~~~~ 135 (376)
T 3ayr_A 62 KTTEDMFKVLIDNQFNVFRIPTTWSGHFGE-----APDYKIDEKWLKRVHEVVDYPYKNGAF-VILNLHHETWNHAFSET 135 (376)
T ss_dssp CCCHHHHHHHHHTTCCEEEECCCCTTSBCC-----TTTCCBCHHHHHHHHHHHHHHHTTTCE-EEEECCSCSSCCSCTTT
T ss_pred cCcHHHHHHHHHcCCCEEEEeeEChhhcCC-----CCCCccCHHHHHHHHHHHHHHHHCCCE-EEEECCCcccccccccc
Confidence 46899999999999997666553 21000 0011 1 56688899999999997 888875411 1233
Q ss_pred HH----HHHHHHHHHH-hCC--CCcEEEEeccccCCChhhhcccCCCCCCCCH---HHHHHHHHHHHHHHHHCCC
Q 012112 229 PQ----MWEESLRRTV-GAQ--PKHVSVYDLQVEQGTKFGILYTPGEFPLPTE---TQSANFYRMASSMLSSAGY 293 (471)
Q Consensus 229 ~e----~~~~~l~~~~-~l~--p~his~y~l~~~pgT~l~~~~~~g~~~~p~~---~~~~~~~~~~~~~L~~~Gy 293 (471)
.+ .+.+-.+.+. +++ +.. -.|.+.=||...-. ...+..++. +...++++.+.+.+++.|-
T Consensus 136 ~~~~~~~~~~~w~~ia~~~~~~~~~-v~~el~NEP~~~~~----~~~W~~~~~~~~~~l~~~~~~~~~aIR~~g~ 205 (376)
T 3ayr_A 136 LDTAKEILEKIWSQIAEEFKDYDEH-LIFEGLNEPRKNDT----PVEWTGGDQEGWDAVNAMNAVFLKTVRSAGG 205 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCTT-EEEECCSCCCCTTS----TTTTTTCCHHHHHHHHHHHHHHHHHHHTSST
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCce-eeEEeecCCCcCCC----ccccCCccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 32 2332223333 343 334 47888888854311 001111222 2344567788888888754
No 243
>1e4i_A Beta-glucosidase; hydrolase, family 1 glycosyl hydrolase, covalent enzyme-GLYC intermediate, alpha/beta barrel; HET: G2F NFG; 2.00A {Bacillus polymyxa} SCOP: c.1.8.4 PDB: 1tr1_A 1bgg_A* 1bga_A 1uyq_A*
Probab=43.11 E-value=24 Score=36.00 Aligned_cols=92 Identities=14% Similarity=0.186 Sum_probs=60.1
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC-CCC---HHHHHHHHHHHHHcCCCeeEeeee-cCCCC-----------
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGR-AHG---LKEVYEAIEIVKLCGVENWSLDLI-SSLPH----------- 226 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R-~~t---~~~~~~ai~~~~~~G~~~v~~DlI-~GlPg----------- 226 (471)
+|.++.|+++|++.+.+++ |- .+++-. |+ ..+ .+-..+.++.+++.|++ +-++|. +++|-
T Consensus 61 ~eDi~lm~~~G~~~~R~si-~W-~Ri~P~-G~g~~n~~Gl~~y~~lid~l~~~GI~-p~vtL~H~d~P~~l~~~ggw~~r 136 (447)
T 1e4i_A 61 EEDIRLMKELGIRTYRFSV-SW-PRIFPN-GDGEVNQKGLDYYHRVVDLLNDNGIE-PFCTLYHWDLPQALQDAGGWGNR 136 (447)
T ss_dssp HHHHHHHHHHTCSEEEEEC-CH-HHHSTT-SSSCCCHHHHHHHHHHHHHHHHTTCE-EEEEEESSCCBHHHHHTTTTSST
T ss_pred HHHHHHHHHcCCCeEEecC-cH-HHhccC-CCCCcCHHHHHHHHHHHHHHHHcCCE-EEEEeCCCcccHHHHhcCCCCCc
Confidence 5889999999999888877 32 223222 12 234 56678899999999997 777775 66662
Q ss_pred CCHHHHHHHHHHHHhCCCCcEEEEeccccCCC
Q 012112 227 QTPQMWEESLRRTVGAQPKHVSVYDLQVEQGT 258 (471)
Q Consensus 227 qT~e~~~~~l~~~~~l~p~his~y~l~~~pgT 258 (471)
++.+.+.+-.+.+.+.=-++|..+...-||..
T Consensus 137 ~~~~~F~~ya~~~~~~~gd~V~~W~t~NEp~~ 168 (447)
T 1e4i_A 137 RTIQAFVQFAETMFREFHGKIQHWLTFNEPWC 168 (447)
T ss_dssp HHHHHHHHHHHHHHHHTBTTBCEEEEEECHHH
T ss_pred hhHHHHHHHHHHHHHHhCCcceeEEEecCccc
Confidence 34555555555555533356666665556654
No 244
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Probab=42.93 E-value=1.2e+02 Score=30.82 Aligned_cols=162 Identities=12% Similarity=0.078 Sum_probs=84.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCC---------H----HHHH-HHHHCCCC--EEEEccCCCCHHHHHH
Q 012112 128 VPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFD---------A----RKME-ELMDLGVN--RVSLGVQAFQDELLKS 191 (471)
Q Consensus 128 l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~---------~----e~l~-~l~~~Gvn--rvsiGvQS~~d~~L~~ 191 (471)
.+++.++.++++..+. +..+-+++.++.++ . ..+. ...++|+. +|.|+...+.+..-+.
T Consensus 29 ~n~e~i~Ail~aAee~-----~sPVIIe~t~~qv~~~gGYtG~~p~~f~~~V~~~A~~~~vPv~pV~LhlDHg~~~~w~~ 103 (450)
T 3txv_A 29 AHPLVIEAAMLRAHRE-----KAPVLIEATCNQVNQDGGYTGMTPEDFTRFVGAIADRIEFPREKILLGGDHLGPNPWKH 103 (450)
T ss_dssp CCHHHHHHHHHHHHHS-----CSCEEEEEETTTSCTTCTTTTCCHHHHHHHHHHHHHHTTCCGGGEEEEEEEESSGGGTT
T ss_pred CCHHHHHHHHHHHHHh-----CCCEEEEcChhhHhhcCCCCCCCHHHHHHHHHHHHHHcCcCcccEEEECCCCCCccccc
Confidence 5788899999888763 34688888876542 2 2222 23457888 5999999886532221
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCC----CHHHH----HHHHHHHHhCCCCc-EE--EEeccccCCChh
Q 012112 192 CGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQ----TPQMW----EESLRRTVGAQPKH-VS--VYDLQVEQGTKF 260 (471)
Q Consensus 192 l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgq----T~e~~----~~~l~~~~~l~p~h-is--~y~l~~~pgT~l 260 (471)
+.-....+...+.+..+-++||.+|.+|-=..-=++ |.+-+ .+.++.+.+.+... ++ .|..--|.++|=
T Consensus 104 ~~~~~am~~a~e~i~~aI~AGFtSVMiD~S~~p~eeNi~lt~evva~rtaeL~~~A~~~~~~~g~~e~~yviGtEvpvpG 183 (450)
T 3txv_A 104 LPADEAMAKAEAMITAYAKAGFTKLHLDTSMGCAGEPTALPDATTAARAARLAAVAEDAVGGRGGVLPVYIIGTEVPIPG 183 (450)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTCCEEEECCCBCCSSSCSBCCHHHHHHHHHHHHHHHHHTC------CCEEEEECC-----
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCEEEECCCCCchhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeeeecCCCC
Confidence 111111223445555666679999988865432222 22322 33345555543221 11 232222111111
Q ss_pred hhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 261 GILYTPGEFPLPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 261 ~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
......+....-+.++..+..+...+.+.+.|..
T Consensus 184 Ga~~~~~~~~~T~PeeA~~fv~~~~~~f~~~gld 217 (450)
T 3txv_A 184 GALEELDTLEVTAPEAAIETVRVHRAAFEEAGAA 217 (450)
T ss_dssp --------CCCCCHHHHHHHHHHHHHHHHHHTCH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence 1111223334556667777777778888888873
No 245
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis}
Probab=42.86 E-value=1.5e+02 Score=28.72 Aligned_cols=122 Identities=11% Similarity=0.035 Sum_probs=63.9
Q ss_pred eeEEEEcCCCCCCCCHHHHHHH--------HHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCH
Q 012112 115 LETVFFGGGTPSLVPPRFVSSI--------LDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQD 186 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~l--------l~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d 186 (471)
++.|++.+...++++++.++++ ++.+++. +..+..-+. ++ ...+..|.+.|++-+++.- +.|-
T Consensus 207 ad~i~i~D~~~~~lsp~~f~ef~~p~~~~i~~~i~~~-----g~~~i~~~~-G~--~~~l~~l~~~g~d~~~~d~-~~d~ 277 (359)
T 2inf_A 207 AKAIQIFDSWVGALNQADYRTYIKPVMNRIFSELAKE-----NVPLIMFGV-GA--SHLAGDWHDLPLDVVGLDW-RLGI 277 (359)
T ss_dssp CSEEEEECTTGGGSCHHHHHHHTHHHHHHHHHHHGGG-----CSCEEEECT-TC--GGGHHHHHTSSCSEEECCT-TSCH
T ss_pred CCEEEEeCCccccCCHHHHHHHhHHHHHHHHHHHHHc-----CCcEEEEcC-Cc--HHHHHHHHHhCCCEEEeCC-CCCH
Confidence 6777777766678998766554 3333321 223333332 22 5688899999999887631 2233
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCC---CcEEEEeccccCCChhhhc
Q 012112 187 ELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQP---KHVSVYDLQVEQGTKFGIL 263 (471)
Q Consensus 187 ~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p---~his~y~l~~~pgT~l~~~ 263 (471)
+.++..+... .-..|++..++ ..|.+++++.++.+++.+. .+|---...+.|+|+..+.
T Consensus 278 ~~~~~~g~~~--------------~l~Gnldp~~l----~~t~e~I~~~v~~~l~~~~~~~g~Il~~gcgi~~~~~~enl 339 (359)
T 2inf_A 278 DEARSKGITK--------------TVQGNLDPSIL----LAPWEVIEQKTKEILDQGMESDGFIFNLGHGVFPDVSPEVL 339 (359)
T ss_dssp HHHHHTTCCS--------------EEECCBCGGGG----GSCHHHHHHHHHHHHHHHTTSSCEEBCBSSCCCTTSCHHHH
T ss_pred HHHHHcCCCE--------------EEEecCChHHh----cCCHHHHHHHHHHHHHhCCCCCCeEEeCCCCCCCCcCHHHH
Confidence 3332221000 00112222222 4577887777777766543 2332222345667776553
No 246
>1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP: c.1.8.3
Probab=42.42 E-value=1.3e+02 Score=28.95 Aligned_cols=113 Identities=10% Similarity=0.140 Sum_probs=67.3
Q ss_pred CHHHHHHHHHCCCCEEEEccCC-------------CCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCC---
Q 012112 162 DARKMEELMDLGVNRVSLGVQA-------------FQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLP--- 225 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS-------------~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlP--- 225 (471)
.++.++.|+++|+|-|-+.+-+ ++++. .+.+.++++.+++.|+. |-+++.-+..
T Consensus 44 ~~~dl~~~k~~G~N~vR~~~~~~~~w~~~~~~~g~~~~~~---------~~~ld~~i~~a~~~Gi~-vil~l~~~~~~~g 113 (373)
T 1rh9_A 44 VTNTFQQASKYKMNVARTWAFSHGGSRPLQSAPGVYNEQM---------FQGLDFVISEAKKYGIH-LIMSLVNNWDAFG 113 (373)
T ss_dssp HHHHHHHHHHTTCCEEEEESSCSSSSSCSEEETTEECHHH---------HHHHHHHHHHHHHTTCE-EEEECCBSSSSSS
T ss_pred HHHHHHHHHHCCCCEEEECeecCCCCccccCCCCccCHHH---------HHHHHHHHHHHHHCCCE-EEEEecccccccC
Confidence 4678999999999988876422 11211 45567789999999997 7777753211
Q ss_pred ------------CC----------C---HHHHHHHHHHHHhC---------C-CCcEEEEeccccCCChhhhcccCCCCC
Q 012112 226 ------------HQ----------T---PQMWEESLRRTVGA---------Q-PKHVSVYDLQVEQGTKFGILYTPGEFP 270 (471)
Q Consensus 226 ------------gq----------T---~e~~~~~l~~~~~l---------~-p~his~y~l~~~pgT~l~~~~~~g~~~ 270 (471)
|. + .+.+.+-++.+.+. + -+.|-.+.+.=||+....
T Consensus 114 g~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~n~~tg~~y~~~p~v~~w~l~NEp~~~~~--------- 184 (373)
T 1rh9_A 114 GKKQYVEWAVQRGQKLTSDDDFFTNPMVKGFYKNNVKVVLTRVNTITKVAYKDDPTILSWELINEPRCPSD--------- 184 (373)
T ss_dssp BHHHHHHHHHHTTCCCCCGGGGGTCHHHHHHHHHHHHHHHHCBCTTTCSBGGGCTTEEEEESCBSCCCTTC---------
T ss_pred ChHHHHHHHhhcCCCCCchhhcccCHHHHHHHHHHHHHHHhccCccCCccccCCCcEEEEeeccCcCccCC---------
Confidence 10 1 23344445555543 1 125777888878764311
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCc
Q 012112 271 LPTETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 271 ~p~~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
++.+...+.+..+.+.+++..=.
T Consensus 185 -~~~~~~~~~~~~~~~~ir~~dp~ 207 (373)
T 1rh9_A 185 -LSGKTFQNWVLEMAGYLKSIDSN 207 (373)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHCCS
T ss_pred -CCHHHHHHHHHHHHHHHHhhCCC
Confidence 12244555666666777665443
No 247
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=42.25 E-value=14 Score=37.53 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHH
Q 012112 197 GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEES 235 (471)
Q Consensus 197 t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~ 235 (471)
|.++..+.++.+++.|++ |-+|+++..=+..-.-+.+.
T Consensus 95 t~~df~~lv~~~h~~Gi~-VilD~V~NH~~~~~~~f~~~ 132 (475)
T 2z1k_A 95 GNEALRHLLEVAHAHGVR-VILDGVFNHTGRGFFAFQHL 132 (475)
T ss_dssp CHHHHHHHHHHHHHTTCE-EEEEECCSBCCTTSHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCE-EEEEEecccccCCCHHHHHH
Confidence 789999999999999998 99999998766544444443
No 248
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=42.23 E-value=33 Score=39.41 Aligned_cols=78 Identities=5% Similarity=-0.023 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCC----CC---CCHHHHH
Q 012112 161 FDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSL----PH---QTPQMWE 233 (471)
Q Consensus 161 l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl----Pg---qT~e~~~ 233 (471)
+..+.++...++|++.+.+- -|. ...+.+..+++.+++.|.. +..++.+.. |. -+.+-+.
T Consensus 646 ~~~~~i~~a~~~g~d~irif-~sl-----------~~~~~~~~~i~~~~~~g~~-v~~~i~~~~~~~d~~r~~~~~~~~~ 712 (1165)
T 2qf7_A 646 VVKYFVRQAAKGGIDLFRVF-DCL-----------NWVENMRVSMDAIAEENKL-CEAAICYTGDILNSARPKYDLKYYT 712 (1165)
T ss_dssp HHHHHHHHHHHHTCCEEEEE-CTT-----------CCGGGGHHHHHHHHHTTCE-EEEEEECCSCTTCTTSGGGCHHHHH
T ss_pred hHHHHHHHHHhcCcCEEEEE-eeH-----------HHHHHHHHHHHHHHhccce-EEEEEEEeccccCCCCCCCCHHHHH
Confidence 44577888999999987773 232 2356788899999999964 777776643 43 3788899
Q ss_pred HHHHHHHhCCCCcEEEEe
Q 012112 234 ESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 234 ~~l~~~~~l~p~his~y~ 251 (471)
+.++.+.+++++.|++-.
T Consensus 713 ~~~~~~~~~Ga~~i~l~D 730 (1165)
T 2qf7_A 713 NLAVELEKAGAHIIAVKD 730 (1165)
T ss_dssp HHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHcCCCEEEEeC
Confidence 999999999999776654
No 249
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=42.20 E-value=4.4 Score=30.22 Aligned_cols=42 Identities=21% Similarity=0.154 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHH
Q 012112 194 RAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEES 235 (471)
Q Consensus 194 R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~ 235 (471)
|..+.+++.+|++.+++-.......--+||+|..|+++-...
T Consensus 12 r~Yte~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RVk~ 53 (70)
T 2cob_A 12 RQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKE 53 (70)
T ss_dssp CCCCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHHHh
Confidence 457899999999999875466556788999999888765443
No 250
>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4
Probab=42.19 E-value=43 Score=31.38 Aligned_cols=20 Identities=10% Similarity=0.217 Sum_probs=11.4
Q ss_pred chhhchHHHHHHHHHhcccC
Q 012112 452 PEGFLLSNELISHAFGVIDS 471 (471)
Q Consensus 452 ~~G~~~~n~i~~~~~~~~~~ 471 (471)
.+++.....++..++..+.|
T Consensus 276 ~~~~~~l~~~~~~~~~~~~~ 295 (296)
T 2g0w_A 276 LKVYNATKKVLDEAWPEISP 295 (296)
T ss_dssp HHHHHHHHHHHHHHCGGGSC
T ss_pred HHHHHHHHHHHHHhcccCCC
Confidence 45555556666666555443
No 251
>3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus}
Probab=42.18 E-value=95 Score=29.98 Aligned_cols=68 Identities=6% Similarity=0.058 Sum_probs=40.2
Q ss_pred eeEEEEc---CCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCC--CCHHHHHHHHHCCCCEEEEccCCCC
Q 012112 115 LETVFFG---GGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGT--FDARKMEELMDLGVNRVSLGVQAFQ 185 (471)
Q Consensus 115 v~~i~fG---GGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~--l~~e~l~~l~~~GvnrvsiGvQS~~ 185 (471)
+-+++.= .|.||. +++.+.++++.|++..+ -.+.+|....... -.++.++.+.+..-.-.|+.+=|.|
T Consensus 48 ivHlHvRdp~dG~ps~-d~~~y~e~i~~IR~~~d--~iI~~TTgg~~~~~~~~eeR~~~~~~~~Pe~aSln~Gs~N 120 (314)
T 3lot_A 48 MVHIHARDPKDGRPTT-DVEVFRYICREIKKQSD--VVINVTTGGGGTLGIPVEERAKVVPALKPEIATFNMGSMN 120 (314)
T ss_dssp EEEECEECTTTCCEEC-CHHHHHHHHHHHHHHCC--CEEEECSSTTGGGTCCHHHHTTHHHHHCCSEEEEECCCEE
T ss_pred EEEEeecCCCCCCcCC-CHHHHHHHHHHHHhcCC--eEEEeCCCCcCCCCCCHHHHHHHHHhcCCceeeecCCCcc
Confidence 4455553 478885 99999999999998632 1122322222211 2346677776666566666665543
No 252
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=41.73 E-value=1.5e+02 Score=28.29 Aligned_cols=121 Identities=9% Similarity=0.021 Sum_probs=64.5
Q ss_pred eeEEEEcCCCCCCCCHHHHH--------HHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCH
Q 012112 115 LETVFFGGGTPSLVPPRFVS--------SILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQD 186 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~--------~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d 186 (471)
++.|.+.+...++++++.++ ++++.+++. + +..+..-+ .. +...+..|++.|++-+++ +..
T Consensus 193 ad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~-~---g~~~i~~~--~g-~~~~l~~l~~~g~d~~~~--d~~-- 261 (338)
T 2eja_A 193 ADVVQIFDSWVNNLSLEDYGEYVYPYVNYLISELKDF-S---DTPVIYFF--RG-SSSFIDLAVDYRADALSV--DWS-- 261 (338)
T ss_dssp CSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHH-C---CCCEEEEE--SS-HHHHHHHHTTSCCSEEEC--CTT--
T ss_pred CCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhc-C---CCCEEEEc--CC-cHHHHHHHHHcCCCEEEe--CCC--
Confidence 56677777666789997655 445555543 1 22344333 22 277999999999997766 321
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhC-CC--CcEEEEeccccCCChhhh
Q 012112 187 ELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGA-QP--KHVSVYDLQVEQGTKFGI 262 (471)
Q Consensus 187 ~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l-~p--~his~y~l~~~pgT~l~~ 262 (471)
.+.+++.+.+ +..-..|+...+++ .|.+++++.++.+++. +. .||---...+.++|+..+
T Consensus 262 ---------~dl~~~~~~~---~~~l~Gn~dp~~l~----gt~e~i~~~v~~~l~~~g~~~g~I~~~g~gi~~~~p~en 324 (338)
T 2eja_A 262 ---------VDIPELFKIY---DKGFQGNLEPAVLY----ASEEVIEEKTLGLLRRIPVKTRYVFNLGHGLAPDMELEK 324 (338)
T ss_dssp ---------SCHHHHHHHC---CSEEECCBCGGGGG----SCHHHHHHHHHHHHTTCCCSSSEEBCBSSCCCTTSCHHH
T ss_pred ---------CCHHHHHHhC---CeEEEECCCHHHhc----CCHHHHHHHHHHHHHHhCCCCCeEEeCCCCCCCCCCHHH
Confidence 2233332222 11111123332333 3677777777777664 44 233222334556666543
No 253
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=41.54 E-value=66 Score=27.15 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHHHHHH
Q 012112 401 TLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNELISHA 465 (471)
Q Consensus 401 ~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i~~~~ 465 (471)
.+-..|++|+++|||....... ..+.|.-+++|| ++|..+.......+
T Consensus 78 tLy~~L~rLE~~GlI~~~~~~~----------------~~~~~rk~Y~LT-~~G~~~l~~~~~~~ 125 (145)
T 1xma_A 78 TLYSAFARLEKNGYIKSYYGEE----------------TQGKRRTYYRIT-PEGIKYYKQKCEEW 125 (145)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEE----------------C--CEEEEEEEC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEecc----------------CCCCCeEEEEEC-HHHHHHHHHHHHHH
Confidence 4668899999999997642100 001122357997 99998887765543
No 254
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=41.51 E-value=29 Score=26.92 Aligned_cols=44 Identities=7% Similarity=0.036 Sum_probs=35.3
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEe
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICL 418 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~ 418 (471)
.|+.-|+....++.+++.+.||++.. .+..-|+.|+++|+|...
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~VS~~-TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQTPQP-LIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTCCHH-HHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHH-HHHHHHHHHHHCCCEEEE
Confidence 34444566677999999999999964 577889999999999875
No 255
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=41.25 E-value=31 Score=32.63 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=59.5
Q ss_pred CHHHHHHHHHCCCCEEEEccCCCCH---------HHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHH--
Q 012112 162 DARKMEELMDLGVNRVSLGVQAFQD---------ELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQ-- 230 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~~d---------~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e-- 230 (471)
+.+.++.|.++|++-|.+|+---|| ...+.+..+.+.+++.+.++.+|+.+.+ +-+-+| |+-+ ...
T Consensus 36 ~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~-~Pivlm-~Y~n-~v~~~ 112 (271)
T 3nav_A 36 SLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPE-TPIGLL-MYAN-LVYAR 112 (271)
T ss_dssp HHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-SCEEEE-ECHH-HHHHT
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CCEEEE-ecCc-HHHHH
Confidence 5678888899999999999765333 3455677889999999999999986432 333333 1100 011
Q ss_pred HHHHHHHHHHhCCCCcEEEEeccc
Q 012112 231 MWEESLRRTVGAQPKHVSVYDLQV 254 (471)
Q Consensus 231 ~~~~~l~~~~~l~p~his~y~l~~ 254 (471)
...+-++.+.+.+++-+-+-.+.+
T Consensus 113 g~~~f~~~~~~aGvdGvIipDlp~ 136 (271)
T 3nav_A 113 GIDDFYQRCQKAGVDSVLIADVPT 136 (271)
T ss_dssp CHHHHHHHHHHHTCCEEEETTSCG
T ss_pred hHHHHHHHHHHCCCCEEEECCCCH
Confidence 135567778888998776644433
No 256
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A
Probab=41.00 E-value=26 Score=36.46 Aligned_cols=54 Identities=9% Similarity=0.110 Sum_probs=39.7
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC-CCCHHHHHHHHHHHHHcCCCeeE--eee
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGR-AHGLKEVYEAIEIVKLCGVENWS--LDL 220 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R-~~t~~~~~~ai~~~~~~G~~~v~--~Dl 220 (471)
++.++.|+++|+|-|.++| +-+ .+.--+. ..+.+-..+.++.++++|+. +- +++
T Consensus 32 ~~dl~~mk~~Gln~Vr~~V-~W~--~iEP~g~G~ydf~~~d~~id~a~~~GL~-viv~L~~ 88 (516)
T 1vem_A 32 ENDLRWAKQNGFYAITVDF-WWG--DMEKNGDQQFDFSYAQRFAQSVKNAGMK-MIPIIST 88 (516)
T ss_dssp HHHHHHHHHTTEEEEEEEE-EHH--HHTCSSTTCCCCHHHHHHHHHHHHTTCE-EEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEec-chh--hccCCCCCccchHHHHHHHHHHHHCCCE-EEEEecc
Confidence 5779999999999999998 332 1222212 34778888999999999997 55 555
No 257
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A*
Probab=40.89 E-value=1.2e+02 Score=29.29 Aligned_cols=58 Identities=17% Similarity=0.122 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHH-HhCCCCcEEEEeccc-cCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc-eeccccccC
Q 012112 228 TPQMWEESLRRT-VGAQPKHVSVYDLQV-EQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR-HYEISSYGE 303 (471)
Q Consensus 228 T~e~~~~~l~~~-~~l~p~his~y~l~~-~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~-~yeis~fa~ 303 (471)
+.+.+.+.++.- .+|+.++|-+|.+.- .+.++ .+ +.+ .+.+.|.+.|.. ++.+|||..
T Consensus 112 s~~~i~~~~e~SL~rL~~dyiDl~~lH~p~~~~~--------------~~---e~~-~al~~l~~~Gkir~iGvSn~~~ 172 (346)
T 3n6q_A 112 SRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTP--------------ME---ETA-SALAHAVQSGKALYVGISSYSP 172 (346)
T ss_dssp CHHHHHHHHHHHHHHHTCSCEEEEEECSCCTTSC--------------HH---HHH-HHHHHHHHTTSEEEEEEESCCH
T ss_pred CHHHHHHHHHHHHHHhCCCcEeEEEEeCCCCCCC--------------HH---HHH-HHHHHHHHcCCeeEEEeCCCCH
Confidence 677788877764 458999999998642 12111 11 222 345667778865 467888853
No 258
>1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A {Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A*
Probab=40.68 E-value=80 Score=30.67 Aligned_cols=126 Identities=16% Similarity=0.152 Sum_probs=70.5
Q ss_pred CCCHHHHHHHH-HCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCC----CHHHHHH
Q 012112 160 TFDARKMEELM-DLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQ----TPQMWEE 234 (471)
Q Consensus 160 ~l~~e~l~~l~-~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgq----T~e~~~~ 234 (471)
.++++.++.|+ +.|+|-|-+.+---++. -..+ ..-.+.+.++++.++++|+. |-+|+----||. ..+.+.+
T Consensus 53 ~~~~~d~~~l~~~~G~N~VRip~~~~~~~--~~~~-~~~l~~ld~~v~~a~~~Gi~-VIld~H~~~~g~~~~~~~~~~~~ 128 (364)
T 1g01_A 53 IVNENAFVALSNDWGSNMIRLAMYIGENG--YATN-PEVKDLVYEGIELAFEHDMY-VIVDWHVHAPGDPRADVYSGAYD 128 (364)
T ss_dssp GCSHHHHHHHHTTSCCSEEEEEEESSSSS--TTTC-TTHHHHHHHHHHHHHHTTCE-EEEEEECCSSSCTTSGGGTTHHH
T ss_pred ccCHHHHHHHHHHCCCCEEEEEeeeCCCC--CccC-HHHHHHHHHHHHHHHHCCCE-EEEEeccCCCCCCChHHHHHHHH
Confidence 35788999996 89999554444310000 0000 11246788899999999997 778887522332 1123333
Q ss_pred HHHHHH-hCC----CCcEEEEeccccCCChhhhcccCCCCCCC-CH---HHHHHHHHHHHHHHHHCCCcee
Q 012112 235 SLRRTV-GAQ----PKHVSVYDLQVEQGTKFGILYTPGEFPLP-TE---TQSANFYRMASSMLSSAGYRHY 296 (471)
Q Consensus 235 ~l~~~~-~l~----p~his~y~l~~~pgT~l~~~~~~g~~~~p-~~---~~~~~~~~~~~~~L~~~Gy~~y 296 (471)
-.+.+. +++ -++| +|.+.=||..... +..-.+ +. +.....++.+.+.+++.+ .+.
T Consensus 129 ~w~~ia~~y~~~~~~~~V-i~el~NEP~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~IR~~~-~~~ 192 (364)
T 1g01_A 129 FFEEIADHYKDHPKNHYI-IWELANEPSPNNN-----GGPGLTNDEKGWEAVKEYAEPIVEMLREKG-DNM 192 (364)
T ss_dssp HHHHHHHHHTTCTTGGGE-EEECCSCCCSCCT-----TSCCCCSSHHHHHHHHHHHHHHHHHHHHHC-CCC
T ss_pred HHHHHHHHhhccCCCCeE-EEEcCCCCCcCcC-----CCcCCCCCHHHHHHHHHHHHHHHHHHHhcC-CcE
Confidence 333332 233 2578 4999888854211 111011 11 233456778888888888 653
No 259
>1vff_A Beta-glucosidase; glycosyl hydrolase, membrane-bound enzyme, thermostability, TIM barrel, alkylglucosides; 2.50A {Pyrococcus horikoshii} SCOP: c.1.8.4
Probab=40.46 E-value=54 Score=33.10 Aligned_cols=92 Identities=15% Similarity=0.215 Sum_probs=58.4
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHH---HHHHHHHHHHHcCCCeeEeeee-cCCCC-----------C
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLK---EVYEAIEIVKLCGVENWSLDLI-SSLPH-----------Q 227 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~---~~~~ai~~~~~~G~~~v~~DlI-~GlPg-----------q 227 (471)
++.++.|+++|+|.+.+++ |- .++.-.-+ ..+.+ -..+.++.++++|+. +-++|- +++|. +
T Consensus 53 ~eDi~lm~~~G~~~~R~si-~W-~ri~P~~g-~~n~~gl~~yd~lid~l~~~GI~-pivtL~H~d~P~~l~~~ggw~~~~ 128 (423)
T 1vff_A 53 RDDIQLMTSLGYNAYRFSI-EW-SRLFPEEN-KFNEDAFMKYREIIDLLLTRGIT-PLVTLHHFTSPLWFMKKGGFLREE 128 (423)
T ss_dssp HHHHHHHHHHTCCEEEEEC-CH-HHHCSBTT-BCCHHHHHHHHHHHHHHHHTTCE-EEEEEESSCCBHHHHHTTGGGSGG
T ss_pred HHHHHHHHHcCCCEEEeec-CH-HHhCCCCC-CcCHHHHHHHHHHHHHHHHCCCE-EEEEccCCcccHHHHhcCCCCCHH
Confidence 6889999999999888877 32 22221112 23444 348899999999997 777776 56652 2
Q ss_pred CHHHHHHHHHHHHhCCCCcEEEEeccccCCCh
Q 012112 228 TPQMWEESLRRTVGAQPKHVSVYDLQVEQGTK 259 (471)
Q Consensus 228 T~e~~~~~l~~~~~l~p~his~y~l~~~pgT~ 259 (471)
+.+.+.+-.+.+.+.=-+ |..+...-||...
T Consensus 129 ~~~~f~~ya~~~~~r~gd-V~~W~t~NEp~~~ 159 (423)
T 1vff_A 129 NLKHWEKYIEKVAELLEK-VKLVATFNEPMVY 159 (423)
T ss_dssp GHHHHHHHHHHHHHHTTT-CCEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CceEEEecCcchh
Confidence 345566666655543234 6666665666543
No 260
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=40.21 E-value=14 Score=37.38 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=41.6
Q ss_pred HHHHHHHHCCCCEEEEcc--CC------------CCHHHHHHcCC-CCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCC
Q 012112 164 RKMEELMDLGVNRVSLGV--QA------------FQDELLKSCGR-AHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQ 227 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGv--QS------------~~d~~L~~l~R-~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgq 227 (471)
++|..|+++|++.|-|.. ++ ++..-...++. --+.+++.+.++.+++.|++ |-+|++++.-+.
T Consensus 34 ~~l~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~gY~~~dy~~i~~~~Gt~~~~~~lv~~~h~~Gi~-vi~D~V~NH~~~ 111 (449)
T 3dhu_A 34 ADLQRIKDLGTDILWLLPINPIGEVNRKGTLGSPYAIKDYRGINPEYGTLADFKALTDRAHELGMK-VMLDIVYNHTSP 111 (449)
T ss_dssp TTHHHHHHHTCSEEEECCCSCBCSTTCCTTTCCTTSBSCTTSCCGGGCCHHHHHHHHHHHHHTTCE-EEEEECCSEECT
T ss_pred HhHHHHHHcCCCEEEECCcccccccCCCCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCE-EEEEEccCcCcC
Confidence 456677777777776652 22 11111112222 23789999999999999998 999999876543
No 261
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1
Probab=40.02 E-value=1.2e+02 Score=29.16 Aligned_cols=60 Identities=17% Similarity=0.135 Sum_probs=34.4
Q ss_pred eeEEEEcCCCCCCCCHHHHHHH--------HHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEc
Q 012112 115 LETVFFGGGTPSLVPPRFVSSI--------LDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLG 180 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~l--------l~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiG 180 (471)
++.|.+.+...++++++.++++ ++.+++..+ +..+..-| +. +...+..|.+.|++-+++.
T Consensus 207 ad~iqi~D~~~~~lsp~~f~ef~~p~~~~i~~~i~~~~~---~~~~ih~c--~g-~~~~l~~l~~~g~d~~~~d 274 (353)
T 1j93_A 207 AQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHP---NLPLILYA--SG-SGGLLERLPLTGVDVVSLD 274 (353)
T ss_dssp CSEEEEECGGGGGSCHHHHHHHTHHHHHHHHHHHHHHST---TCCEEEEC--SS-CTTTGGGGGGGCCSEEECC
T ss_pred CCEEEEeCcccccCCHHHHHHHhHHHHHHHHHHHHHhCC---CCCEEEEC--CC-hHHHHHHHHhcCCCEEEeC
Confidence 5667776655557898765544 455544321 12232222 22 2356778889999987763
No 262
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=39.90 E-value=29 Score=25.96 Aligned_cols=43 Identities=9% Similarity=0.187 Sum_probs=33.2
Q ss_pred HHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEE
Q 012112 373 DVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVI 416 (471)
Q Consensus 373 e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~ 416 (471)
..++--++...=+.+++++..||.+-.+.. +.|+.|.+.|.+.
T Consensus 10 ~~Fi~yIk~~Kvv~LedLA~~F~l~t~~~i-~RI~~Le~~g~lt 52 (72)
T 1wi9_A 10 TEFINYIKKSKVVLLEDLAFQMGLRTQDAI-NRIQDLLTEGTLT 52 (72)
T ss_dssp HHHHHHHHHCSEECHHHHHHHHCSCHHHHH-HHHHHHHHHSSSC
T ss_pred HHHHHHHHHcCeeeHHHHHHHhCCChHHHH-HHHHHHHHCCCeE
Confidence 334445556667899999999999977654 7899999999874
No 263
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=39.84 E-value=12 Score=38.24 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHH
Q 012112 197 GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESL 236 (471)
Q Consensus 197 t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l 236 (471)
+.+++.+.|+.+++.|++ |-+|+++..-+..-.-+.+.+
T Consensus 101 t~~df~~Lv~~aH~~Gi~-VilD~V~NH~s~~~~~f~~~~ 139 (488)
T 2wc7_A 101 GNEAFKELLDAAHQRNIK-VVLDGVFNHSSRGFFFFHDVL 139 (488)
T ss_dssp HHHHHHHHHHHHHHTTCE-EEEEECCSBCCSSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCE-EEEEeCCCcCCCcCHHHHHHH
Confidence 578999999999999998 999999998766544444433
No 264
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=39.71 E-value=2.7e+02 Score=27.39 Aligned_cols=101 Identities=7% Similarity=0.043 Sum_probs=60.9
Q ss_pred HHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCC
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQ 243 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~ 243 (471)
+.++.|.++|+..|.+|.=..++ +..++++.+++.+.. ..+ +++.-+ .. ++++.+.+.+
T Consensus 29 ~ia~~L~~~Gv~~IE~g~p~~~~-------------~~~~~~~~i~~~~~~-~~v-~~~~r~--~~----~di~~a~~~g 87 (382)
T 2ztj_A 29 EIAKALDEFGIEYIEVTTPVASP-------------QSRKDAEVLASLGLK-AKV-VTHIQC--RL----DAAKVAVETG 87 (382)
T ss_dssp HHHHHHHHHTCSEEEECCTTSCH-------------HHHHHHHHHHTSCCS-SEE-EEEEES--CH----HHHHHHHHTT
T ss_pred HHHHHHHHcCcCEEEEcCCcCCH-------------HHHHHHHHHHhcCCC-cEE-EEEccc--Ch----hhHHHHHHcC
Confidence 45677778899999999643332 334667777777654 222 122111 22 3467788889
Q ss_pred CCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCC--Cc
Q 012112 244 PKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAG--YR 294 (471)
Q Consensus 244 p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~G--y~ 294 (471)
++.|.+|.- -+.++.. ++. .+.++..++...+.+..++.| +.
T Consensus 88 ~~~v~i~~~----~s~~~~~----~~~-~s~~e~l~~~~~~v~~ak~~g~~~~ 131 (382)
T 2ztj_A 88 VQGIDLLFG----TSKYLRA----PHG-RDIPRIIEEAKEVIAYIREAAPHVE 131 (382)
T ss_dssp CSEEEEEEC----C------------C-CCHHHHHHHHHHHHHHHHHHCTTSE
T ss_pred CCEEEEEec----cCHHHHH----HhC-CCHHHHHHHHHHHHHHHHHcCCCEE
Confidence 998887752 2223222 111 356777788888999999999 65
No 265
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=39.62 E-value=1.2e+02 Score=23.60 Aligned_cols=43 Identities=9% Similarity=0.029 Sum_probs=33.1
Q ss_pred HHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEec
Q 012112 375 LMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLD 419 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~ 419 (471)
++..|. ..++...++.+.+|.+-. .+...++.|.+.|++....
T Consensus 31 IL~~L~-~~~~~~~ela~~l~is~s-tvs~~L~~L~~~Glv~~~~ 73 (106)
T 1r1u_A 31 IMELLS-VSEASVGHISHQLNLSQS-NVSHQLKLLKSVHLVKAKR 73 (106)
T ss_dssp HHHHHH-HCCBCHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHH-hCCCCHHHHHHHHCcCHH-HHHHHHHHHHHCCCeEEEE
Confidence 333344 467899999999999854 4677899999999998643
No 266
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Probab=39.23 E-value=1.1e+02 Score=26.06 Aligned_cols=48 Identities=13% Similarity=0.152 Sum_probs=37.5
Q ss_pred HHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCcee
Q 012112 237 RRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRHY 296 (471)
Q Consensus 237 ~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~y 296 (471)
+.+.+++.+.|-+|+|...-. .+.+.+...++...+.+.|.+.||..+
T Consensus 66 ~~a~kv~~~~ivlYPyAHLSs------------~La~P~~A~~iL~~le~~L~~~g~eV~ 113 (143)
T 2hl0_A 66 KVAEQVKAENVFVYPFAHLSS------------ELAKPSVAMDILNRVYQGLKERGFNVG 113 (143)
T ss_dssp HHHHHHTCCEEEEEECGGGCS------------SBCCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHhcCCCEEEEeccccccC------------ccCChHHHHHHHHHHHHHHHhCCCeEE
Confidence 344567899999999876532 245678889999999999999998765
No 267
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=39.07 E-value=2.5e+02 Score=26.37 Aligned_cols=77 Identities=14% Similarity=0.192 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCC-C-CHHHHHHHH
Q 012112 93 NYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGT-F-DARKMEELM 170 (471)
Q Consensus 93 ~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~-l-~~e~l~~l~ 170 (471)
.|+..+.+++... +++.|++.+ |-..+.|.++.++++.+++.++ +..+.+.++.+. + ....+..+
T Consensus 156 ~~~~~~~~~~~~~--------Ga~~i~l~D-T~G~~~P~~~~~lv~~l~~~~~---~~~i~~H~Hn~~Gla~An~laA~- 222 (298)
T 2cw6_A 156 AKVAEVTKKFYSM--------GCYEISLGD-TIGVGTPGIMKDMLSAVMQEVP---LAALAVHCHDTYGQALANTLMAL- 222 (298)
T ss_dssp HHHHHHHHHHHHT--------TCSEEEEEE-TTSCCCHHHHHHHHHHHHHHSC---GGGEEEEEBCTTSCHHHHHHHHH-
T ss_pred HHHHHHHHHHHHc--------CCCEEEecC-CCCCcCHHHHHHHHHHHHHhCC---CCeEEEEECCCCchHHHHHHHHH-
Confidence 4555666665543 257788874 7778899999999999999863 356777776543 2 34555555
Q ss_pred HCCCCEEEEccC
Q 012112 171 DLGVNRVSLGVQ 182 (471)
Q Consensus 171 ~~GvnrvsiGvQ 182 (471)
++|+++|...+-
T Consensus 223 ~aGa~~vd~tv~ 234 (298)
T 2cw6_A 223 QMGVSVVDSSVA 234 (298)
T ss_dssp HTTCCEEEEBTT
T ss_pred HhCCCEEEeecc
Confidence 579999977554
No 268
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=39.07 E-value=75 Score=25.00 Aligned_cols=47 Identities=9% Similarity=0.202 Sum_probs=34.8
Q ss_pred HHHHHHhccccCCC-CHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEec
Q 012112 372 MDVLMLSFRTARGV-DLKSFGETFGCSLVHTLCKAYKPYIESGHVICLD 419 (471)
Q Consensus 372 ~e~~~~~Lr~~~gi-~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~ 419 (471)
.+.|+..|+....+ +..+++++||.+-. .+.+.++.|.++|+|....
T Consensus 30 ~~~I~~~l~~g~~lps~~eLa~~lgVSr~-tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 30 IEHIFEELDGNEGLLVASKIADRVGITRS-VIVNALRKLESAGVIESRS 77 (102)
T ss_dssp HHHHTTSSBTTEEEECHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHhhhcCCCcCCCHHHHHHHHCcCHH-HHHHHHHHHHHCCCEEEEe
Confidence 45555334333335 89999999999854 4778999999999998754
No 269
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=39.06 E-value=53 Score=31.54 Aligned_cols=77 Identities=18% Similarity=0.304 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe--cCCCCCHHHHHHHH
Q 012112 93 NYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM--DPGTFDARKMEELM 170 (471)
Q Consensus 93 ~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~--~P~~l~~e~l~~l~ 170 (471)
.|+..+.+.+.... ++.|++. +|-..+.|.++.++++.+++.++ +..+.+-+ +.+.-....+..+
T Consensus 157 ~~~~~~~~~~~~~G--------a~~i~l~-DT~G~~~P~~v~~lv~~l~~~~~---~~~l~~H~Hnd~Gla~AN~laAv- 223 (307)
T 1ydo_A 157 EQVIRLSEALFEFG--------ISELSLG-DTIGAANPAQVETVLEALLARFP---ANQIALHFHDTRGTALANMVTAL- 223 (307)
T ss_dssp HHHHHHHHHHHHHT--------CSCEEEE-CSSCCCCHHHHHHHHHHHHTTSC---GGGEEEECBGGGSCHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcC--------CCEEEEc-CCCCCcCHHHHHHHHHHHHHhCC---CCeEEEEECCCCchHHHHHHHHH-
Confidence 45555555555431 4667886 47778899999999999988763 34566666 3333355666666
Q ss_pred HCCCCEEEEccC
Q 012112 171 DLGVNRVSLGVQ 182 (471)
Q Consensus 171 ~~GvnrvsiGvQ 182 (471)
++|+++|.-.+-
T Consensus 224 ~aGa~~vd~tv~ 235 (307)
T 1ydo_A 224 QMGITVFDGSAG 235 (307)
T ss_dssp HHTCCEEEEBGG
T ss_pred HhCCCEEEEccc
Confidence 569999877664
No 270
>1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus thermophilus} SCOP: c.1.15.3 PDB: 1bxc_A
Probab=39.02 E-value=2.8e+02 Score=26.94 Aligned_cols=118 Identities=14% Similarity=0.071 Sum_probs=66.0
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCC----HHHHHHHHHHHHHcCCCeeEeee-e-------c---CCCCC
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHG----LKEVYEAIEIVKLCGVENWSLDL-I-------S---SLPHQ 227 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t----~~~~~~ai~~~~~~G~~~v~~Dl-I-------~---GlPgq 227 (471)
.+.++.++++|++.|.+. +.- ......+ .+++.+..+.+++.|+.-+++.. . . .-|..
T Consensus 36 ~e~l~~aa~~G~~~vEl~-----~~~--~~p~~~~~~e~~~~~~~l~~~l~~~GL~i~~~~~~~~~~p~~~~g~l~~~d~ 108 (387)
T 1bxb_A 36 VYVVHKLAELGAYGVNLH-----DED--LIPRGTPPQERDQIVRRFKKALDETGLKVPMVTANLFSDPAFKDGAFTSPDP 108 (387)
T ss_dssp HHHHHHHHHHTCSEEEEE-----HHH--HSCTTCCTTHHHHHHHHHHHHHHHHTCBCCEEECCCSSSGGGGGCSTTCSSH
T ss_pred HHHHHHHHHhCCCEEEec-----Ccc--cCCCCCChhhhHHHHHHHHHHHHHhCCEEEEEecCCCCCccccCCCCCCCCH
Confidence 578899999999999885 111 1111112 45666777788888987334432 1 1 11221
Q ss_pred -----CHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q 012112 228 -----TPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGY 293 (471)
Q Consensus 228 -----T~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy 293 (471)
..+.+++.++.+.+++.+.|.+.. |..-+... ...-....-+...+.+..+.+...+.||
T Consensus 109 ~~r~~~i~~~~~~i~~A~~LGa~~vv~~~-----G~~g~~~~-~~~~~~~~~~~~~e~L~~l~~~a~~~g~ 173 (387)
T 1bxb_A 109 WVRAYALRKSLETMDLGAELGAEIYVVWP-----GREGAEVE-ATGKARKVWDWVREALNFMAAYAEDQGY 173 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCEEEECC-----TTCEESCG-GGCGGGTHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEECC-----CCCCccCC-ccCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 135677888888899998886543 21100000 0000001224566777777888887743
No 271
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=39.02 E-value=44 Score=32.04 Aligned_cols=119 Identities=13% Similarity=0.160 Sum_probs=55.9
Q ss_pred HHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEee----------------eecCCCCC
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLD----------------LISSLPHQ 227 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~D----------------lI~GlPgq 227 (471)
+..+.+.+.|.+-|-||.||..+-. ..+.-....+.+...++.+++.++. |++| +|-..-|.
T Consensus 56 ~~a~~~v~~GAdIIDIGgeSTrPga-~~v~~~eE~~Rv~pvI~~l~~~~vp-iSIDT~~~~Va~aAl~aGa~iINdVsg~ 133 (294)
T 2dqw_A 56 ERAREMVAEGADILDLGAESTRPGA-APVPVEEEKRRLLPVLEAVLSLGVP-VSVDTRKPEVAEEALKLGAHLLNDVTGL 133 (294)
T ss_dssp HHHHHHHHHTCSEEEEECC------------CCHHHHHHHHHHHHHTTCSC-EEEECSCHHHHHHHHHHTCSEEECSSCS
T ss_pred HHHHHHHHCCCCEEEECCCcCCCCC-CCCCHHHHHHHHHHHHHHHHhCCCe-EEEECCCHHHHHHHHHhCCCEEEECCCC
Confidence 5667777888899999998865420 1111111222333333443333333 3332 44444444
Q ss_pred CHHHHHHHHHHHHhCCCCcEEEEeccccC-CChhhhcccCCCCCCCC-HHHHHHHHHHHHHHHHHCCCc
Q 012112 228 TPQMWEESLRRTVGAQPKHVSVYDLQVEQ-GTKFGILYTPGEFPLPT-ETQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 228 T~e~~~~~l~~~~~l~p~his~y~l~~~p-gT~l~~~~~~g~~~~p~-~~~~~~~~~~~~~~L~~~Gy~ 294 (471)
..+ +.+..+.+.+..-| ++.-. |+|-.-+. .-.+ .+ .++..+.+....+.+.++|..
T Consensus 134 ~d~---~m~~v~a~~~~~vV----lmh~~eG~p~tm~~-~~~y--~dv~~ev~~~l~~~i~~a~~~Gi~ 192 (294)
T 2dqw_A 134 RDE---RMVALAARHGVAAV----VMHMPVPDPATMMA-HARY--RDVVAEVKAFLEAQARRALSAGVP 192 (294)
T ss_dssp CCH---HHHHHHHHHTCEEE----EECCSSSCTTTGGG-GCCC--SSHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCh---HHHHHHHHhCCCEE----EEcCCCCCCccccc-cCcc--ccHHHHHHHHHHHHHHHHHHCCCC
Confidence 223 44556666765422 22223 55421110 0011 11 145566777788888899987
No 272
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=38.97 E-value=14 Score=37.74 Aligned_cols=30 Identities=7% Similarity=0.048 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeeEeeeecCCCC
Q 012112 196 HGLKEVYEAIEIVKLCGVENWSLDLISSLPH 226 (471)
Q Consensus 196 ~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg 226 (471)
-+.+++.+.|+.+++.|++ |-+|++++.-+
T Consensus 95 Gt~~df~~lv~~~H~~Gi~-VilD~V~NH~~ 124 (478)
T 2guy_A 95 GTADDLKALSSALHERGMY-LMVDVVANHMG 124 (478)
T ss_dssp CCHHHHHHHHHHHHHTTCE-EEEEECCSBCC
T ss_pred CCHHHHHHHHHHHHHCCCE-EEEEECcccCC
Confidence 3789999999999999998 99999998543
No 273
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A
Probab=38.96 E-value=27 Score=33.58 Aligned_cols=93 Identities=8% Similarity=0.160 Sum_probs=54.2
Q ss_pred HHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCC
Q 012112 95 IQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGV 174 (471)
Q Consensus 95 v~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gv 174 (471)
++..++....+.+. +.+.||+-++.|+ .+.+.++.+.+.... .+ -+||.....-..+.|+++|+
T Consensus 169 ~~~ai~Ra~ay~eA-----GAd~i~~e~~~~~---~~~~~~i~~~~~~~~------P~--i~~~~~~~~~~~~eL~~lGv 232 (295)
T 1s2w_A 169 LDEALKRAEAYRNA-----GADAILMHSKKAD---PSDIEAFMKAWNNQG------PV--VIVPTKYYKTPTDHFRDMGV 232 (295)
T ss_dssp HHHHHHHHHHHHHT-----TCSEEEECCCSSS---SHHHHHHHHHHTTCS------CE--EECCSTTTTSCHHHHHHHTC
T ss_pred HHHHHHHHHHHHHc-----CCCEEEEcCCCCC---HHHHHHHHHHcCCCC------CE--EEeCCCCCCCCHHHHHHcCC
Confidence 34455555544432 3688998655554 367777777774211 12 24554211112778889999
Q ss_pred CEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 012112 175 NRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGV 213 (471)
Q Consensus 175 nrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~ 213 (471)
+++++|...+... ..-+.++.+.+++.|-
T Consensus 233 ~~v~~~~~~~raa----------~~a~~~~~~~i~~~g~ 261 (295)
T 1s2w_A 233 SMVIWANHNLRAS----------VSAIQQTTKQIYDDQS 261 (295)
T ss_dssp CEEEECSHHHHHH----------HHHHHHHHHHHHHHSS
T ss_pred cEEEEChHHHHHH----------HHHHHHHHHHHHHcCC
Confidence 9999998765322 2334556666666654
No 274
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain; NMR {Escherichia coli}
Probab=38.85 E-value=43 Score=25.84 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=38.3
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCC---HHHHHHHHHCCCCEEEEccCC
Q 012112 117 TVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFD---ARKMEELMDLGVNRVSLGVQA 183 (471)
Q Consensus 117 ~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~---~e~l~~l~~~GvnrvsiGvQS 183 (471)
.+|++| .+. +.+.|...+ .....-.++..+.|.++.+.-- -+.+..++++|+.+|+|-.+.
T Consensus 31 ~i~~~~-~~v--~~~~L~~~l---~~~~~~~~~~~V~I~aD~~~~y~~vv~vmd~l~~aG~~~v~l~t~~ 94 (99)
T 2pfu_A 31 SMFIGN-DPV--TDETMITAL---NALTEGKKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVGEE 94 (99)
T ss_dssp EEEETT-EEE--CSSSHHHHH---HHHSSSCCSSCEEEEECTTCCHHHHHHHHHHHHHTCCCCEECTTCC
T ss_pred CEEECC-Eec--CHHHHHHHH---HHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 467764 442 323444444 3333334556788888765332 378888999999999997765
No 275
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=38.52 E-value=40 Score=25.86 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=37.3
Q ss_pred HHHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecC
Q 012112 372 MDVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDE 420 (471)
Q Consensus 372 ~e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~ 420 (471)
.+.|..-|+ ..|+...+++++.|.+- ......|..|+++|+|...++
T Consensus 19 ~~~IL~lL~-~~g~sa~eLAk~LgiSk-~aVr~~L~~Le~eG~I~~~~~ 65 (82)
T 1oyi_A 19 VCEAIKTIG-IEGATAAQLTRQLNMEK-REVNKALYDLQRSAMVYSSDD 65 (82)
T ss_dssp HHHHHHHHS-SSTEEHHHHHHHSSSCH-HHHHHHHHHHHHHTSSEECSS
T ss_pred HHHHHHHHH-HcCCCHHHHHHHHCcCH-HHHHHHHHHHHHCCCEEeCCC
Confidence 344555666 46799999999999997 457889999999999987653
No 276
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A*
Probab=38.30 E-value=1.4e+02 Score=27.86 Aligned_cols=113 Identities=15% Similarity=0.077 Sum_probs=69.5
Q ss_pred HHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCC-------CCHHHHHHHH
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPH-------QTPQMWEESL 236 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg-------qT~e~~~~~l 236 (471)
+.++.|++.|+|-|-+.+-... .-.....+.+.++++.+.+.|+. |-+|+- +.|| ++.+.+.+-+
T Consensus 36 ~~~~~lk~~G~N~VRi~~~~~~------~w~~~~~~~ld~~v~~a~~~Gi~-Vild~h-~~~~~~~~~~~~~~~~~~~~w 107 (302)
T 1bqc_A 36 QAFADIKSHGANTVRVVLSNGV------RWSKNGPSDVANVISLCKQNRLI-CMLEVH-DTTGYGEQSGASTLDQAVDYW 107 (302)
T ss_dssp THHHHHHHTTCSEEEEEECCSS------SSCCCCHHHHHHHHHHHHHTTCE-EEEEEG-GGTTTTTSTTCCCHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEccCCc------ccCCCCHHHHHHHHHHHHHCCCE-EEEEec-cCCCCCCCCchhhHHHHHHHH
Confidence 6889999999996666553110 00112467889999999999997 778864 3332 3456666655
Q ss_pred HHHHh-C--CCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q 012112 237 RRTVG-A--QPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 237 ~~~~~-l--~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
+.+.+ + .+.. -.|.+.=||...... ..+.-...++.+.+.+++.+-.+
T Consensus 108 ~~ia~~~k~~~~v-v~~el~NEP~~~~~~----------~~~~w~~~~~~~~~~IR~~dp~~ 158 (302)
T 1bqc_A 108 IELKSVLQGEEDY-VLINIGNEPYGNDSA----------TVAAWATDTSAAIQRLRAAGFEH 158 (302)
T ss_dssp HHTHHHHTTCTTT-EEEECSSSCCCSCHH----------HHTTHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHhcCCCCE-EEEEeCCCCCCCCCc----------chhhHHHHHHHHHHHHHhcCCCc
Confidence 55443 2 2444 478888787432110 00113456777888888877654
No 277
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=38.30 E-value=1.3e+02 Score=27.91 Aligned_cols=122 Identities=12% Similarity=0.086 Sum_probs=78.5
Q ss_pred cEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHH-HcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCC
Q 012112 150 AEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLK-SCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQT 228 (471)
Q Consensus 150 ~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~-~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT 228 (471)
.++.+|++| ++|+++...+..-..+.+-.+.=.+-.=. -+.=....+.+..+++.++++|+. ||+.+= |.
T Consensus 67 ~~lNlE~a~---t~emi~ia~~~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~GIr-VSLFID---pd-- 137 (243)
T 1m5w_A 67 TRMNLEMAV---TEEMLAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQ-VSLFID---AD-- 137 (243)
T ss_dssp SEEEEEECS---SHHHHHHHHHHCCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCE-EEEEEC---SC--
T ss_pred CCEEeccCC---CHHHHHHHHHcCCCEEEECCCCCCCcCCCcchhHHhhHHHHHHHHHHHHHCCCE-EEEEeC---CC--
Confidence 589999987 78999999999999999988753221100 011112357788999999999997 887432 22
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q 012112 229 PQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 229 ~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
.+.++.+.+.+.+.|-+|.= ++.... .....+...+.+..+.....+.|...
T Consensus 138 ----~~qi~aA~~~GA~~IELhTG------~Ya~a~-----~~~~~~~el~~i~~aa~~A~~lGL~V 189 (243)
T 1m5w_A 138 ----EEQIKAAAEVGAPFIEIHTG------CYADAK-----TDAEQAQELARIAKAATFAASLGLKV 189 (243)
T ss_dssp ----HHHHHHHHHTTCSEEEEECH------HHHHCC-----SHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred ----HHHHHHHHHhCcCEEEEech------hhhcCC-----CchhHHHHHHHHHHHHHHHHHcCCEE
Confidence 24678889999999999862 122110 00112234455666666666666543
No 278
>1ug6_A Beta-glycosidase; glucosidase, atomic resolution, riken structural genomics/PR initiative, RSGI, structural genomics, hydrolase; 0.99A {Thermus thermophilus} SCOP: c.1.8.4 PDB: 1np2_A
Probab=38.21 E-value=27 Score=35.45 Aligned_cols=93 Identities=20% Similarity=0.225 Sum_probs=58.0
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC-CCC---HHHHHHHHHHHHHcCCCeeEeeee-cCCCCC----------
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGR-AHG---LKEVYEAIEIVKLCGVENWSLDLI-SSLPHQ---------- 227 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R-~~t---~~~~~~ai~~~~~~G~~~v~~DlI-~GlPgq---------- 227 (471)
++.++.|+++|+|.+.+++ |- .++.-. ++ ..+ .+-..+.++.+++.|++ +-++|- +++|..
T Consensus 60 ~eDi~lm~~~G~~~~R~si-~W-~Ri~P~-g~g~~n~~gl~~y~~~id~l~~~GI~-p~vtL~H~d~P~~l~~~ggw~~~ 135 (431)
T 1ug6_A 60 EEDIALMQSLGVRAYRFSV-AW-PRILPE-GRGRINPKGLAFYDRLVDRLLASGIT-PFLTLYHWDLPLALEERGGWRSR 135 (431)
T ss_dssp HHHHHHHHHHTCCEEEEEC-CH-HHHSTT-SSSCCCHHHHHHHHHHHHHHHHTTCE-EEEEEESSCCBHHHHTTTGGGSH
T ss_pred HHHHHHHHHcCCCEEEccc-CH-HHcccC-CCCCcCHHHHHHHHHHHHHHHHcCCE-EEEEeCCCCCCcchhhcCCCCCh
Confidence 6889999999999888777 32 222221 11 224 56678899999999997 777765 666621
Q ss_pred -CHHHHHHHHHHHHhCCCCcEEEEeccccCCCh
Q 012112 228 -TPQMWEESLRRTVGAQPKHVSVYDLQVEQGTK 259 (471)
Q Consensus 228 -T~e~~~~~l~~~~~l~p~his~y~l~~~pgT~ 259 (471)
+.+.+.+-.+.+.+.=-++|..+...-||...
T Consensus 136 ~~~~~F~~ya~~~~~~~gd~V~~W~t~NEp~~~ 168 (431)
T 1ug6_A 136 ETAFAFAEYAEAVARALADRVPFFATLNEPWCS 168 (431)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEecCcchh
Confidence 34444444444444323456666655566543
No 279
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=38.02 E-value=1.2e+02 Score=24.31 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHHHHHH
Q 012112 401 TLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNELISHA 465 (471)
Q Consensus 401 ~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i~~~~ 465 (471)
.+-+.|.+|+++|||....... ..+.+.-+.+|| ++|.........++
T Consensus 48 tlY~~L~rLe~~GlI~~~~~~~----------------~~g~~rk~Y~lT-~~G~~~l~~~~~~~ 95 (116)
T 3hhh_A 48 TVYTILLRLEKNQWVIAEKKPS----------------EKGPMRKFYRLT-SSGEAELADFWQRW 95 (116)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEC----------------C--CEEEEEEEC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEeeec----------------CCCCCceEEEEC-HHHHHHHHHHHHHH
Confidence 4668999999999998642100 001122367997 99999887765543
No 280
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=37.73 E-value=19 Score=34.71 Aligned_cols=55 Identities=15% Similarity=0.372 Sum_probs=42.0
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQA 183 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS 183 (471)
++.|-+-. ++++.+.+.++.++. .+.+|+. +.++.+.++.+++.||+.||+|-=+
T Consensus 228 aDiImLDn-----~s~~~l~~av~~~~~--------~v~leaS-GGIt~~~i~~~A~tGVD~IsvGalt 282 (300)
T 3l0g_A 228 VDMILLDN-----MSISEIKKAVDIVNG--------KSVLEVS-GCVNIRNVRNIALTGVDYISIGCIT 282 (300)
T ss_dssp CSEEEEES-----CCHHHHHHHHHHHTT--------SSEEEEE-SSCCTTTHHHHHTTTCSEEECGGGT
T ss_pred CCEEEECC-----CCHHHHHHHHHhhcC--------ceEEEEE-CCCCHHHHHHHHHcCCCEEEeCccc
Confidence 56676742 477888888877752 3566665 4689999999999999999999654
No 281
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=37.68 E-value=42 Score=27.06 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=30.6
Q ss_pred HHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHHHHHH
Q 012112 402 LCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNELISHA 465 (471)
Q Consensus 402 ~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i~~~~ 465 (471)
+-+.|+.|+++|||...... . .+.+.-+++|| ++|..+.......+
T Consensus 52 ly~~L~~Le~~GlI~~~~~~----------------~-~~~~r~~Y~LT-~~G~~~l~~~~~~~ 97 (118)
T 2esh_A 52 IYRVLADLEESGFLSTEWDT----------------T-VSPPRKIYRIT-PQGKLYLREILRSL 97 (118)
T ss_dssp HHHHHHHHHHTTSEEEEEEC----------------S-SSSCEEEEEEC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEeec----------------C-CCCCceEEEEC-hHHHHHHHHHHHHH
Confidence 56789999999999864310 0 01122356997 99999887765443
No 282
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}
Probab=37.62 E-value=43 Score=32.47 Aligned_cols=98 Identities=10% Similarity=0.173 Sum_probs=56.5
Q ss_pred HHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHH---HHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 012112 135 SILDTLTDKFGLSLDAEISMEMDPGTFDARKMEEL---MDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLC 211 (471)
Q Consensus 135 ~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l---~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~ 211 (471)
+.++.|++. ++..+++-++......+-++.+ .+.|++.+-+-. + .+..+.+.++++.+++.
T Consensus 63 e~l~~i~~~----~~~~~~~L~r~~~~~~~dv~~~~~a~~~Gvd~~ri~~---~---------~~nle~~~~~v~~ak~~ 126 (320)
T 3dxi_A 63 SVLKHLRNI----STKKIAIMLNEKNTTPEDLNHLLLPIIGLVDMIRIAI---D---------PQNIDRAIVLAKAIKTM 126 (320)
T ss_dssp HHHHHHHHH----CCSEEEEEEEGGGCCGGGHHHHHGGGTTTCSEEEEEE---C---------GGGHHHHHHHHHHHHTT
T ss_pred HHHHHHhhc----cCCeEEEEecCCCCChhhHHHHHHhhhcCCCEEEEEe---c---------HHHHHHHHHHHHHHHHC
Confidence 344555542 4556777664322212223222 347898776653 1 12478889999999999
Q ss_pred CCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 212 GVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 212 G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y 250 (471)
|+. |...+++.-|-.+.+.+...+.. ++.+++.|++-
T Consensus 127 G~~-v~~~~~~~~~~~~~~~~l~~~~~-~~~G~~~i~l~ 163 (320)
T 3dxi_A 127 GFE-VGFNVMYMSKWAEMNGFLSKLKA-IDKIADLFCMV 163 (320)
T ss_dssp TCE-EEEEECCTTTGGGSTTSGGGGGG-GTTTCSEEEEE
T ss_pred CCE-EEEEEEeCCCCCCHHHHHHHHHH-hhCCCCEEEEC
Confidence 997 88888875554444333333333 34566655543
No 283
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1
Probab=37.57 E-value=13 Score=38.05 Aligned_cols=62 Identities=5% Similarity=0.140 Sum_probs=40.8
Q ss_pred HHHHHHHHCCCCEEEEcc--CC-------------CCHHHHHHcCCC-CCHHHHHHHHHHHHHcCCCeeEeeeecCCCC
Q 012112 164 RKMEELMDLGVNRVSLGV--QA-------------FQDELLKSCGRA-HGLKEVYEAIEIVKLCGVENWSLDLISSLPH 226 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGv--QS-------------~~d~~L~~l~R~-~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg 226 (471)
++|..|+++||+.|-|.. ++ ++..-...++.. -|.+++.+.|+.+++.|++ |-+|+++..-+
T Consensus 47 ~~LdyL~~LGv~~I~l~Pi~~~~~~~~~~~~~~~GY~~~dy~~id~~~Gt~~df~~lv~~~H~~Gi~-VilD~V~NH~~ 124 (484)
T 2aaa_A 47 DHLDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALHARGMY-LMVDVVPDHMG 124 (484)
T ss_dssp HTHHHHHTTTCCEEEECCCEEECCCCBTTBCSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHTTTCE-EEEEECCSBCC
T ss_pred HHHHHHHhcCCCEEEeCccccCcccccccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCE-EEEEECcCCcC
Confidence 445666667777665531 11 111112233333 3789999999999999998 99999998644
No 284
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=37.14 E-value=63 Score=26.00 Aligned_cols=49 Identities=16% Similarity=0.052 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHHHHHH
Q 012112 401 TLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNELISHA 465 (471)
Q Consensus 401 ~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i~~~~ 465 (471)
.+-+.|.+|+++|||...... .+..+.+.-+.+|| ++|.........++
T Consensus 58 tLY~~L~rLe~~GlI~~~~~~---------------~~~~~~~rk~Y~LT-~~G~~~l~~~~~~~ 106 (115)
T 2dql_A 58 VLYSAIKFLEDNRAITGYWKK---------------LEGRGRPRRMYQVS-PEWQHQAEDLARLW 106 (115)
T ss_dssp HHHHHHHHHHHTTSEEEEEEC---------------CTTCSSCEEEEEEC-GGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCEEEEeee---------------cCCCCCCcEEEEEC-HHHHHHHHHHHHHH
Confidence 566899999999999864210 00001122368997 99999888776554
No 285
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=36.70 E-value=2.4e+02 Score=26.70 Aligned_cols=103 Identities=11% Similarity=0.077 Sum_probs=68.7
Q ss_pred HHHHHHHcCCCCCcEEEEEe---cCCCCCHHHHHHHHHCCCCEEEEccCC---CCHHHHHHc-CCCCCHHHHHHHHHHHH
Q 012112 137 LDTLTDKFGLSLDAEISMEM---DPGTFDARKMEELMDLGVNRVSLGVQA---FQDELLKSC-GRAHGLKEVYEAIEIVK 209 (471)
Q Consensus 137 l~~l~~~~~l~~~~eitiE~---~P~~l~~e~l~~l~~~GvnrvsiGvQS---~~d~~L~~l-~R~~t~~~~~~ai~~~~ 209 (471)
++..++..+.-.+..+..-+ +|..-....++.++++|+.-+ +..=| .|-...+.| .++.+.++..+.++.++
T Consensus 82 ~e~~~evlp~v~~iPV~Agv~~~DP~~~~g~~Le~lk~~Gf~Gv-~N~ptvglidG~fr~~LEE~gm~~~~eve~I~~A~ 160 (286)
T 2p10_A 82 VDMAREVLPVVRHTPVLAGVNGTDPFMVMSTFLRELKEIGFAGV-QNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEAH 160 (286)
T ss_dssp HHHHHHHGGGCSSSCEEEEECTTCTTCCHHHHHHHHHHHTCCEE-EECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCCCEEEEECCcCCCcCHHHHHHHHHHhCCceE-EECCCcccccchhhhhHhhcCCCHHHHHHHHHHHH
Confidence 45555666665566676666 565567899999999999865 33321 234444444 45679999999999999
Q ss_pred HcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 210 LCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 210 ~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
+.|+.++- ..+ |+++ .+.+.+++||-|.+.+
T Consensus 161 ~~gL~Ti~--~v~-----~~ee----A~amA~agpDiI~~h~ 191 (286)
T 2p10_A 161 KLDLLTTP--YVF-----SPED----AVAMAKAGADILVCHM 191 (286)
T ss_dssp HTTCEECC--EEC-----SHHH----HHHHHHHTCSEEEEEC
T ss_pred HCCCeEEE--ecC-----CHHH----HHHHHHcCCCEEEECC
Confidence 99995432 222 3333 3455789999877664
No 286
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=36.60 E-value=85 Score=24.61 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=29.9
Q ss_pred CCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEe
Q 012112 383 RGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICL 418 (471)
Q Consensus 383 ~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~ 418 (471)
.++...++.+.+|.+.. .+...++.|.+.|+|...
T Consensus 37 ~~~s~~eLa~~lgis~s-tvs~~L~~L~~~GlV~~~ 71 (108)
T 2kko_A 37 GERAVEAIATATGMNLT-TASANLQALKSGGLVEAR 71 (108)
T ss_dssp CCEEHHHHHHHHTCCHH-HHHHHHHHHHHHTSEEEE
T ss_pred CCcCHHHHHHHHCcCHH-HHHHHHHHHHHCCCeEEE
Confidence 57899999999999864 467789999999999864
No 287
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=36.29 E-value=2.9e+02 Score=26.32 Aligned_cols=89 Identities=19% Similarity=0.110 Sum_probs=64.0
Q ss_pred cEEEEEecCCCCC------HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecC
Q 012112 150 AEISMEMDPGTFD------ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISS 223 (471)
Q Consensus 150 ~eitiE~~P~~l~------~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~G 223 (471)
..+|+|..|..-. .+.++.|+..+++.||+--=. .+.+......++..+++.|++ +-..+-..
T Consensus 13 ~~~S~E~~PPk~~~~~~~l~~~~~~L~~~~pd~vsVT~~~----------~g~~r~~t~~~a~~i~~~g~~-~i~Hltc~ 81 (310)
T 3apt_A 13 PLFSFEFFPPKDPEGEEALFRTLEELKAFRPAFVSITYGA----------MGSTRERSVAWAQRIQSLGLN-PLAHLTVA 81 (310)
T ss_dssp CEEEEEECCCSSHHHHHHHHHHHHHHGGGCCSEEEECCCS----------TTCSHHHHHHHHHHHHHTTCC-BCEEEECT
T ss_pred cEEEEEEeCCCCcchHHHHHHHHHHHhcCCCCEEEEecCC----------CCCcchhHHHHHHHHHHhCCC-eEEEeecC
Confidence 4699999886321 356667777788999994411 122444566677777788997 55666554
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 224 LPHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 224 lPgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
+-|.++++..|..+.++++++|-+-.
T Consensus 82 --~~~~~~l~~~L~~~~~~GI~niLaLr 107 (310)
T 3apt_A 82 --GQSRKEVAEVLHRFVESGVENLLALR 107 (310)
T ss_dssp --TSCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred --CCCHHHHHHHHHHHHHCCCCEEEEEc
Confidence 68999999999999999999876554
No 288
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=36.26 E-value=14 Score=37.11 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=42.2
Q ss_pred HHHHHHHHCCCCEEEEcc--CCC-CH---------------HHHHHcCCC-CCHHHHHHHHHHHHHcCCCeeEeeeecCC
Q 012112 164 RKMEELMDLGVNRVSLGV--QAF-QD---------------ELLKSCGRA-HGLKEVYEAIEIVKLCGVENWSLDLISSL 224 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGv--QS~-~d---------------~~L~~l~R~-~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl 224 (471)
++|..|+++||+.|-|.. ++. .+ .-...+... -+.++..+.++.+++.|++ |-+|++++.
T Consensus 21 ~~l~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~~~~~gY~~~~y~~~~~~~G~~~d~~~lv~~~h~~Gi~-VilD~V~NH 99 (422)
T 1ua7_A 21 HNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLGTEQEFKEMCAAAEEYGIK-VIVDAVINH 99 (422)
T ss_dssp HTHHHHHHTTCSEEEECCCEEECCTGGGCCBGGGGGGGGCEEEEEEEETTTEEHHHHHHHHHHHHTTTCE-EEEEECCSB
T ss_pred HHHHHHHHcCCCEEEeCCccccccCCcCcCccCCccccccceeeeccCCCCCCHHHHHHHHHHHHHCCCE-EEEEeccCc
Confidence 556777888888877654 111 11 001112222 3789999999999999998 999999986
Q ss_pred CCC
Q 012112 225 PHQ 227 (471)
Q Consensus 225 Pgq 227 (471)
-+.
T Consensus 100 ~~~ 102 (422)
T 1ua7_A 100 TTF 102 (422)
T ss_dssp CCS
T ss_pred ccC
Confidence 443
No 289
>2j78_A Beta-glucosidase A; family 1, hydrolase, inhibitor, glycosidase, polysaccharide degradation, transition state mimic, carbohydrate metabolism; HET: GOX; 1.65A {Thermotoga maritima} SCOP: c.1.8.4 PDB: 1oif_A* 1oim_A* 1oin_A* 1od0_A* 1w3j_A* 1uz1_A* 2cbv_A* 2ces_A* 2cet_A* 2j75_A* 2j77_A* 2cbu_A* 2j79_A* 2j7b_A* 2j7c_A* 2j7d_A* 2j7e_A* 2j7f_A* 2j7g_A* 2j7h_A* ...
Probab=36.02 E-value=53 Score=33.62 Aligned_cols=92 Identities=15% Similarity=0.162 Sum_probs=58.3
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCC-CCH---HHHHHHHHHHHHcCCCeeEeeee-cCCCC-----------
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRA-HGL---KEVYEAIEIVKLCGVENWSLDLI-SSLPH----------- 226 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~-~t~---~~~~~ai~~~~~~G~~~v~~DlI-~GlPg----------- 226 (471)
++.++.|+++|+|.+.++| |- .+++-. |++ .+. +-..+.++.+++.|+. +-++|- +++|.
T Consensus 84 ~eDi~lm~~~G~~~~R~si-~W-~Ri~P~-G~g~~n~~gl~~yd~lid~l~~~GI~-pivtL~H~d~P~~l~~~ggw~~~ 159 (468)
T 2j78_A 84 KEDIEIIEKLGVKAYRFSI-SW-PRILPE-GTGRVNQKGLDFYNRIIDTLLEKGIT-PFVTIYHWDLPFALQLKGGWANR 159 (468)
T ss_dssp HHHHHHHHHTTCCEEEEEC-CH-HHHSTT-SSSCCCHHHHHHHHHHHHHHHHTTCE-EEEEEESSCCBHHHHTTTGGGST
T ss_pred HHHHHHHHHcCCCEEEecc-CH-HHhCCC-CCCCcCHHHHHHHHHHHHHHHhcCCE-EEEEccCCCCchhhhhcCCCCCh
Confidence 6899999999999888877 21 222221 222 233 5678889999999997 777773 56662
Q ss_pred CCHHHHHHHHHHHHhCCCCcEEEEeccccCCC
Q 012112 227 QTPQMWEESLRRTVGAQPKHVSVYDLQVEQGT 258 (471)
Q Consensus 227 qT~e~~~~~l~~~~~l~p~his~y~l~~~pgT 258 (471)
++.+.+.+-.+.+.+.=-+.|..+...-||..
T Consensus 160 ~~~~~F~~ya~~~~~~~gd~V~~W~t~NEp~~ 191 (468)
T 2j78_A 160 EIADWFAEYSRVLFENFGDRVKNWITLNEPWV 191 (468)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHhCCccceEEEccccch
Confidence 34566666666555432235555555556644
No 290
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=35.84 E-value=20 Score=38.15 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=48.9
Q ss_pred HHHHHHHHHCCCCEEEEcc--CCCCHH-----HHHHcCCC-CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHH
Q 012112 163 ARKMEELMDLGVNRVSLGV--QAFQDE-----LLKSCGRA-HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEE 234 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGv--QS~~d~-----~L~~l~R~-~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~ 234 (471)
.++|.-|+++|||.|-|-. +|.++. -...+... -|.+++.+.|+.|++.|+. |-+|++++.-+..-.-+.+
T Consensus 242 ~~kLdYLk~LGvt~I~L~Pif~s~~~~GYd~~dy~~idp~~Gt~~df~~LV~~aH~~GI~-VIlD~V~NHts~~h~wf~~ 320 (645)
T 4aef_A 242 KEKIDHLVNLGINAIYLTPIFSSLTYHGYDIVDYFHVARRLGGDRAFVDLLSELKRFDIK-VILDGVFHHTSFFHPYFQD 320 (645)
T ss_dssp HHTHHHHHHHTCCEEEECCCEEESSTTCSSEEEEEEECGGGTCHHHHHHHHHHHHHTTCE-EEEEECCSBCCTTSHHHHH
T ss_pred HHhhHHHHHcCCCEEEECCCCCCCCCCCcCccCCCccCcccCCHHHHHHHHHHhhhcCCE-EEEEecccccccCCchhhh
Confidence 3667788888888877642 222110 01112222 3789999999999999998 9999999987765554544
Q ss_pred HH
Q 012112 235 SL 236 (471)
Q Consensus 235 ~l 236 (471)
.+
T Consensus 321 ~~ 322 (645)
T 4aef_A 321 VV 322 (645)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 291
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=35.65 E-value=1.1e+02 Score=24.46 Aligned_cols=43 Identities=7% Similarity=0.158 Sum_probs=33.8
Q ss_pred HHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEe
Q 012112 375 LMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICL 418 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~ 418 (471)
++..|....++...++.+.+|.+-. .+...++.|.+.|++...
T Consensus 47 IL~~L~~~~~~s~~eLa~~l~is~s-tvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 47 ITYALCQDEELCVCDIANILGVTIA-NASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp HHHHHHHSSCEEHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHCCCcCHHHHHHHHCcCHH-HHHHHHHHHHHCCCeEEE
Confidence 4444544567999999999999864 467789999999999864
No 292
>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A
Probab=35.39 E-value=2.2e+02 Score=26.57 Aligned_cols=106 Identities=11% Similarity=0.155 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHH--------
Q 012112 160 TFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQM-------- 231 (471)
Q Consensus 160 ~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~-------- 231 (471)
.++.+ +|+++|++.+-+| +-+-++.++ -+.+.+.+-++.+.++|+.- |+-. |||.++
T Consensus 79 EiS~~---mL~d~G~~~ViiG----HSERR~~f~--Etd~~v~~Kv~~Al~~GL~p-----I~Cv-GEtleere~g~t~~ 143 (256)
T 1aw2_A 79 DMSPA---MLKEFGATHIIIG----HSERREYHA--ESDEFVAKKFAFLKENGLTP-----VLCI-GESDAQNEAGETMA 143 (256)
T ss_dssp CCCHH---HHHHHTCCEEEES----CHHHHHHSC--CCHHHHHHHHHHHHHHTCEE-----EEEE-CCCHHHHHTTCHHH
T ss_pred ccCHH---HHHHcCCCEEEEC----chhhccccC--CCHHHHHHHHHHHHHCCCEE-----EEEc-CCcHHHHhcCCHHH
Confidence 35665 4566799999997 555555543 56778888899999999862 2222 777765
Q ss_pred -HHHHHHHHH-hCCCCc----EEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 012112 232 -WEESLRRTV-GAQPKH----VSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSS 290 (471)
Q Consensus 232 -~~~~l~~~~-~l~p~h----is~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~ 290 (471)
+.+-|+.++ .+.++. +-.| || .| .-|.-..++.++..++....++.|.+
T Consensus 144 vv~~Ql~~~l~~~~~~~~~~vvIAY----EP---vW---AIGTG~~Atpe~a~evh~~IR~~l~~ 198 (256)
T 1aw2_A 144 VCARQLDAVINTQGVEALEGAIIAY----EP---IW---AIGTGKAATAEDAQRIHAQIRAHIAE 198 (256)
T ss_dssp HHHHHHHHHHHHHCGGGGTTCEEEE----CC---TT---TTTSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHcCCEEEEE----CC---HH---HhCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 333343333 234442 2233 33 11 11222457888999999999999987
No 293
>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi}
Probab=35.33 E-value=2.7e+02 Score=25.67 Aligned_cols=109 Identities=18% Similarity=0.128 Sum_probs=67.8
Q ss_pred HHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHH---------HHH
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQM---------WEE 234 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~---------~~~ 234 (471)
+....|+++|++.+-+| +.+-+...+ -+-+.+-+-++.+.++|+.- |+-. |||.++ +.+
T Consensus 72 ~~~~mL~d~G~~~ViiG----HSERR~~f~--Etd~~v~~Kv~~Al~~GL~p-----I~Cv-GEtleereag~t~~vv~~ 139 (244)
T 2v5b_A 72 DALASLKDYGISWVVLG----HSERRLYYG--ETNEIVAEKVAQACAAGFHV-----IVCV-GETNEEREAGRTAAVVLT 139 (244)
T ss_dssp HHHHHHHHTTCCEEEEC----CHHHHHHSC--CCHHHHHHHHHHHHHTTCEE-----EEEE-CCCHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHcCCCEEEeC----chhhhhccC--CCHHHHHHHHHHHHHCCCeE-----EEEc-CCcHHHHhcCCHHHHHHH
Confidence 33899999999999997 555555543 56778888899999999862 2222 777765 344
Q ss_pred HHHHHHh-CCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 012112 235 SLRRTVG-AQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSS 290 (471)
Q Consensus 235 ~l~~~~~-l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~ 290 (471)
-|+.+++ +.++.++---...|| .+- -|.-..++.++..++....++.|.+
T Consensus 140 Ql~~~l~~~~~~~~~~~vIAYEP---vWA---IGTG~~Atpe~aqevh~~IR~~l~~ 190 (244)
T 2v5b_A 140 QLAAVAQKLSKEAWSRVVIAYEP---VWA---IGTGKVATPQQAQEVHELLRRWVRS 190 (244)
T ss_dssp HHHHHHTTCCTGGGGGEEEEECC---HHH---HSSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHcCCEEEEECC---HHH---hCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4444443 344321111112233 121 1222457888888999999988875
No 294
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=35.26 E-value=20 Score=36.91 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=43.9
Q ss_pred HHHHHHHHCCCCEEEEcc--CCCC-H-----HHHHHcCCC-CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHH
Q 012112 164 RKMEELMDLGVNRVSLGV--QAFQ-D-----ELLKSCGRA-HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQ 230 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGv--QS~~-d-----~~L~~l~R~-~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e 230 (471)
++|..|+++|||-|-|-. +|-. + .-...+... -|.+++.+.|+.|++.|++ |-+|++++.=+..-.
T Consensus 36 ~kLdYLk~LGvt~I~L~Pi~~~~~~~~GYd~~dy~~vdp~~Gt~~dfk~Lv~~aH~~Gi~-VilD~V~NHts~~~~ 110 (549)
T 4aie_A 36 SRLDYLEKLGIDAIWLSPVYQSPGVDNGYDISDYEAIDPQYGTMADMDELISKAKEHHIK-IVMDLVVNHTSDQHK 110 (549)
T ss_dssp TTHHHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHTTCE-EEEEECCSBCCTTSH
T ss_pred HhhHHHHHCCCCEEEeCCCcCCCCCCCCcCccCCCCcCcccCCHHHHHHHHHHHHHCCCE-EEEEECccCCcCCcc
Confidence 456677777777776543 2211 1 011123333 3789999999999999998 999999988665433
No 295
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=35.19 E-value=1.3e+02 Score=27.52 Aligned_cols=109 Identities=14% Similarity=0.254 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCcEEEEEe------cCCCCCH-----------HHHHHHHHCCCCEEEEccCCCC-----
Q 012112 128 VPPRFVSSILDTLTDKFGLSLDAEISMEM------DPGTFDA-----------RKMEELMDLGVNRVSLGVQAFQ----- 185 (471)
Q Consensus 128 l~~~~l~~ll~~l~~~~~l~~~~eitiE~------~P~~l~~-----------e~l~~l~~~GvnrvsiGvQS~~----- 185 (471)
+++..+.++.+.+++. + .+++.-. +..+.++ +.++..++.|+..|.+.+-+..
T Consensus 44 ~~~~~~~~~~~~l~~~-g----l~i~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~ 118 (294)
T 3vni_A 44 YSDIQINELKACAHGN-G----ITLTVGHGPSAEQNLSSPDPDIRKNAKAFYTDLLKRLYKLDVHLIGGALYSYWPIDYT 118 (294)
T ss_dssp CCHHHHHHHHHHHHHT-T----CEEEEEECCCGGGCTTCSCHHHHHHHHHHHHHHHHHHHHHTCCEEEESTTSCSSCCTT
T ss_pred cCHHHHHHHHHHHHHc-C----CeEEEeecCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeeeccccCCCCCcCC
Confidence 4677888887777653 3 3455421 1222233 2567777789999875443211
Q ss_pred -----HHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCC---CCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 186 -----DELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPH---QTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 186 -----d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg---qT~e~~~~~l~~~~~l~p~his~y 250 (471)
++.++. ..+.+.+..+.+++.|+. +.+--+-+.|+ .|.+++.+.+ .+.+.+++.+.
T Consensus 119 ~~~~~~~~~~~-----~~~~l~~l~~~a~~~Gv~-l~lEn~~~~~~~~~~~~~~~~~l~---~~v~~~~vg~~ 182 (294)
T 3vni_A 119 KTIDKKGDWER-----SVESVREVAKVAEACGVD-FCLEVLNRFENYLINTAQEGVDFV---KQVDHNNVKVM 182 (294)
T ss_dssp SCCCHHHHHHH-----HHHHHHHHHHHHHHTTCE-EEEECCCTTTCSSCCSHHHHHHHH---HHHCCTTEEEE
T ss_pred CCCCHHHHHHH-----HHHHHHHHHHHHHHcCCE-EEEEecCcccCcccCCHHHHHHHH---HHcCCCCEEEE
Confidence 111111 134455566677788986 77777654443 4666555544 44455555543
No 296
>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A*
Probab=35.18 E-value=39 Score=35.96 Aligned_cols=56 Identities=20% Similarity=0.187 Sum_probs=37.9
Q ss_pred CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeee
Q 012112 162 DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDL 220 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~Dl 220 (471)
-++.++.|+++|+|.|.+++=+. ..+.--.-..+.+.+.+.++.+++.|+. |-+++
T Consensus 16 ~~~dl~~mk~~G~N~vR~~if~W--~~~eP~~g~~d~~~ld~~ld~a~~~Gi~-vil~~ 71 (645)
T 1kwg_A 16 WKEDARRMREAGLSHVRIGEFAW--ALLEPEPGRLEWGWLDEAIATLAAEGLK-VVLGT 71 (645)
T ss_dssp HHHHHHHHHHHTCCEEEECTTCH--HHHCSBTTBCCCHHHHHHHHHHHTTTCE-EEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeeech--hhcCCCCCccChHHHHHHHHHHHHCCCE-EEEeC
Confidence 45778999999999999986111 1111000113556778899999999997 66665
No 297
>1wcg_A Thioglucosidase, myrosinase; aphid, beta-glucosidase, insect, beta-barrel, hydrolase, glycosidase; 1.10A {Brevicoryne brassicae} SCOP: c.1.8.4
Probab=35.00 E-value=47 Score=34.02 Aligned_cols=102 Identities=12% Similarity=0.061 Sum_probs=63.9
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC--CCCH---HHHHHHHHHHHHcCCCeeEeeee-cCCCC----------
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGR--AHGL---KEVYEAIEIVKLCGVENWSLDLI-SSLPH---------- 226 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R--~~t~---~~~~~ai~~~~~~G~~~v~~DlI-~GlPg---------- 226 (471)
+|.+++|+++|++.+.+++ |- .+++-. ++ ..+. +-..+.++.+++.|++ +-+.|- +++|-
T Consensus 62 ~eDi~lm~~~G~~~~R~si-sW-sRi~P~-g~~g~~n~~Gl~~y~~~id~l~~~GI~-p~vtL~H~d~P~~L~~~ggw~~ 137 (464)
T 1wcg_A 62 KEDVAIIKDLNLKFYRFSI-SW-ARIAPS-GVMNSLEPKGIAYYNNLINELIKNDII-PLVTMYHWDLPQYLQDLGGWVN 137 (464)
T ss_dssp HHHHHHHHHHTCSEEEEEC-CH-HHHSTT-SCTTSCCHHHHHHHHHHHHHHHHTTCE-EEEEEESSCCBHHHHHTTGGGS
T ss_pred HHHHHHHHHhCCCeEEecc-cH-HHhCCC-CCCCCcCHHHHHHHHHHHHHHHHCCCE-EEEEeCCCCCCcchhhcCCCCC
Confidence 6889999999999888887 43 233321 21 2344 5577889999999998 556553 56663
Q ss_pred -CCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCC
Q 012112 227 -QTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEF 269 (471)
Q Consensus 227 -qT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~ 269 (471)
++.+.+.+-.+.+.+.=-++|..+...-||+.... -+..|..
T Consensus 138 r~~~~~f~~ya~~~~~~~gd~V~~W~t~NEp~~~~~-gy~~G~~ 180 (464)
T 1wcg_A 138 PIMSDYFKEYARVLFTYFGDRVKWWITFNEPIAVCK-GYSIKAY 180 (464)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEEECHHHHHH-HHHSSSS
T ss_pred hhHHHHHHHHHHHHHHHhCCcCcEEEEccccchhhc-ccccCcc
Confidence 45666666666665533355666655556654333 3334443
No 298
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=34.86 E-value=54 Score=30.70 Aligned_cols=92 Identities=12% Similarity=0.098 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHH--------------------
Q 012112 129 PPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDEL-------------------- 188 (471)
Q Consensus 129 ~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~-------------------- 188 (471)
..+.+..+++.+++ .++++|+-++| +.+.++.-++.|.++|.+=-..+-+..
T Consensus 109 ~~~~L~~~i~~L~~-----~GIrVSLFIDp---d~~qi~aA~~~GAd~IELhTG~YA~a~~~~~sn~~~~~~~~~~l~~~ 180 (260)
T 3o6c_A 109 NHAKLKQSIEKLQN-----ANIEVSLFINP---SLEDIEKSKILKAQFIELHTGHYANLHNALFSNISHTAFALKELDQD 180 (260)
T ss_dssp TCTTHHHHHHHHHH-----TTCEEEEEECS---CHHHHHHHHHTTCSEEEECCHHHHHHHHHHHSSGGGSTTCCGGGCSC
T ss_pred CHHHHHHHHHHHHH-----CCCEEEEEeCC---CHHHHHHHHHhCCCEEEEechHhhhhhhccccccccccccccccccc
Confidence 55678888888876 46789999998 699999999999999999444333321
Q ss_pred ---HHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHH
Q 012112 189 ---LKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMW 232 (471)
Q Consensus 189 ---L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~ 232 (471)
++.. +....+.+.++.+.+++.|+. ||. ==||--++...+
T Consensus 181 ~~~~~~~-~~~el~~l~~aA~~A~~lGL~-VnA--GHGL~y~Nv~~i 223 (260)
T 3o6c_A 181 KKTLQAQ-FEKELQNLELCAKKGLELGLK-VAA--GHGLNYKNVKPV 223 (260)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHTTCE-EEE--CTTCCTTTTHHH
T ss_pred cchhhHH-HHHHHHHHHHHHHHHHHcCCE-Eec--CCCCCHHHHHHH
Confidence 1110 112345666777788888986 554 345655655544
No 299
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Probab=34.29 E-value=2.6e+02 Score=29.16 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=72.7
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHC--CCCEE-EEccCCCC--HHHH
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDL--GVNRV-SLGVQAFQ--DELL 189 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~--Gvnrv-siGvQS~~--d~~L 189 (471)
.+-|-+|-|.+.+-..+.+.+++..+++..+ ..++|. +.+.+.++.--++ |..-| |+.... + ++++
T Consensus 354 AdiIDIgpg~~~v~~~ee~~rvv~~i~~~~~----vpisID----T~~~~v~eaal~~~~G~~iINdis~~~-~~~~~~~ 424 (566)
T 1q7z_A 354 AEVLDVNFGIESQIDVRYVEKIVQTLPYVSN----VPLSLD----IQNVDLTERALRAYPGRSLFNSAKVDE-EELEMKI 424 (566)
T ss_dssp CSEEEEECSSGGGSCHHHHHHHHHHHHHHTC----SCEEEE----CCCHHHHHHHHHHCSSCCEEEEEESCH-HHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHhhCC----ceEEEe----CCCHHHHHHHHHhcCCCCEEEECCcch-hhHHHHH
Confidence 5667777666656567899999999987643 346665 4577777776666 74433 222222 3 4444
Q ss_pred HHc----------C-C---CCC----HHHHHHHHHHHHHcCC-CeeEeeeec---CCCCCCHHHHHHHHHHHHhCC
Q 012112 190 KSC----------G-R---AHG----LKEVYEAIEIVKLCGV-ENWSLDLIS---SLPHQTPQMWEESLRRTVGAQ 243 (471)
Q Consensus 190 ~~l----------~-R---~~t----~~~~~~ai~~~~~~G~-~~v~~DlI~---GlPgqT~e~~~~~l~~~~~l~ 243 (471)
..+ . + ..+ .+...+.++.+.++|+ ++|-+|-.+ |+--++ -++.+.++.+.+++
T Consensus 425 ~~~~~~g~~vV~m~~~~~~p~t~~~~~~~l~~~~~~a~~~Gi~~~IilDPg~~~igfgk~~-~~~l~~~~~~~~~g 499 (566)
T 1q7z_A 425 NLLKKYGGTLIVLLMGKDVPKSFEERKEYFEKALKILERHDFSDRVIFDPGVLPLGAEGKP-VEVLKTIEFISSKG 499 (566)
T ss_dssp HHHHHHCCEEEEESCSSSCCCSHHHHHHHHHHHHHHHHHTTCGGGEEEECCCCCTTTTCCH-HHHHHHHHHHHHTT
T ss_pred HHHHHhCCeEEEEeCCCCCcCCHHHHHHHHHHHHHHHHHCCCCCcEEEeCCCCcccCcHHH-HHHHHHHHHHHhCC
Confidence 431 1 1 112 3456677888899999 689999888 663322 33344555666654
No 300
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=34.17 E-value=1.3e+02 Score=28.30 Aligned_cols=89 Identities=12% Similarity=0.112 Sum_probs=64.3
Q ss_pred cEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHH-HcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCC
Q 012112 150 AEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLK-SCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQT 228 (471)
Q Consensus 150 ~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~-~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT 228 (471)
.++.+|++| ++|.++...+..-..+.+-.+.=.+-.=. -+.=....+.+..+++.++++|+. ||+.+= |.
T Consensus 95 t~lNlEma~---t~emi~ial~~kP~~vtLVPEkreE~TTegGlDv~~~~~~L~~~i~~L~~~GIr-VSLFID---pd-- 165 (278)
T 3gk0_A 95 TRMNLECAV---TPEMLDIACEIRPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVR-VSLFID---PD-- 165 (278)
T ss_dssp SCEEEEECS---SHHHHHHHHHHCCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCE-EEEEEC---SC--
T ss_pred CCEEeecCC---CHHHHHHHHHcCCCEEEECCCCCCCcCCCcchhhhccHHHHHHHHHHHHHCCCE-EEEEeC---CC--
Confidence 579999987 89999999999989999987762221100 011123467788999999999997 887431 22
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEe
Q 012112 229 PQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 229 ~e~~~~~l~~~~~l~p~his~y~ 251 (471)
.+.++.+.+.+.+.|-+|.
T Consensus 166 ----~~qI~aA~~~GAd~IELhT 184 (278)
T 3gk0_A 166 ----EAQIRAAHETGAPVIELHT 184 (278)
T ss_dssp ----HHHHHHHHHHTCSEEEECC
T ss_pred ----HHHHHHHHHhCcCEEEEec
Confidence 2357888999999998875
No 301
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=34.17 E-value=63 Score=25.99 Aligned_cols=48 Identities=8% Similarity=0.123 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHHHHHH
Q 012112 401 TLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNELISHA 465 (471)
Q Consensus 401 ~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i~~~~ 465 (471)
.+-+.|.+|+++|||...... ...+.+.-+.+|| ++|.........++
T Consensus 44 tlY~~L~rLe~~GlI~~~~~~----------------~~~g~~rk~Y~LT-~~G~~~l~~~~~~~ 91 (115)
T 4esb_A 44 SIYPLLLRMQKEKLIEGTLKA----------------SSLGPKRKYYHIT-DKGLEQLEEFKQSW 91 (115)
T ss_dssp HHHHHHHHHHHTTSEEEEEEE----------------CTTSCEEEEEEEC-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCeEEEeee----------------cCCCCCcEEEEEC-HHHHHHHHHHHHHH
Confidence 466889999999999864210 0001122357897 99999888765543
No 302
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=33.93 E-value=43 Score=32.98 Aligned_cols=133 Identities=20% Similarity=0.235 Sum_probs=76.4
Q ss_pred EEecCCCCC-----HHHHHHHHHCCCC-EEEEccCCCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCeeEeeeecCC
Q 012112 154 MEMDPGTFD-----ARKMEELMDLGVN-RVSLGVQAFQDELLKSCGRAHG---LKEVYEAIEIVKLCGVENWSLDLISSL 224 (471)
Q Consensus 154 iE~~P~~l~-----~e~l~~l~~~Gvn-rvsiGvQS~~d~~L~~l~R~~t---~~~~~~ai~~~~~~G~~~v~~DlI~Gl 224 (471)
+-.||+++- ++.++..++.|+. ||-+.-=|.+++++++.+.... .+.+.+-++.+.+.||.++-+ -+
T Consensus 109 lRINPGNig~~~~~~~vv~~ak~~~~piRIGvN~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~gf~~ivi----S~ 184 (366)
T 3noy_A 109 IRINPGNIGKEEIVREIVEEAKRRGVAVRIGVNSGSLEKDLLEKYGYPSAEALAESALRWSEKFEKWGFTNYKV----SI 184 (366)
T ss_dssp EEECHHHHSCHHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCEEE----EE
T ss_pred EEECCcccCchhHHHHHHHHHHHcCCCEEEecCCcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCCCeEEE----ee
Confidence 556888873 4667777888875 6666677889999999885543 334444556677789976544 44
Q ss_pred CCCCHHHHHHHHHHHHhCCCCcEEEEecc---ccCCChhh----------hcccCCC-----CCCCCHHHHHHHHHHHHH
Q 012112 225 PHQTPQMWEESLRRTVGAQPKHVSVYDLQ---VEQGTKFG----------ILYTPGE-----FPLPTETQSANFYRMASS 286 (471)
Q Consensus 225 PgqT~e~~~~~l~~~~~l~p~his~y~l~---~~pgT~l~----------~~~~~g~-----~~~p~~~~~~~~~~~~~~ 286 (471)
......+..+..+.+.+. .+ |+|. -+.|+... .++..|- +.+..+ -. +-...+.+
T Consensus 185 K~S~v~~~i~ayr~la~~-~d----yPLHlGvTEAG~~~~G~ikSsigiG~LL~dGIGDTIRVSLt~~-p~-~Ev~va~~ 257 (366)
T 3noy_A 185 KGSDVLQNVRANLIFAER-TD----VPLHIGITEAGMGTKGIIKSSVGIGILLYMGIGDTVRVSLTDD-PV-VEVETAYE 257 (366)
T ss_dssp ECSSHHHHHHHHHHHHHH-CC----CCEEECCSSCCSHHHHHHHHHHHHHHHHHTTCCSEECCCCSSC-HH-HHHHHHHH
T ss_pred ecCChHHHHHHHHHHHhc-cC----CCEEEccCCCCCCcceeeehHHHHHHHHHhcccceEEEeCCCC-cH-HHHHHHHH
Confidence 455555555555554443 12 3332 13344422 2222221 122211 12 22367889
Q ss_pred HHHHCCCceec
Q 012112 287 MLSSAGYRHYE 297 (471)
Q Consensus 287 ~L~~~Gy~~ye 297 (471)
.|+..|.....
T Consensus 258 ILqslglR~~g 268 (366)
T 3noy_A 258 ILKSLGLRRRG 268 (366)
T ss_dssp HHHHTTSCCSS
T ss_pred HHHhcCCCcCC
Confidence 99999988653
No 303
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=33.89 E-value=2.9e+02 Score=25.93 Aligned_cols=76 Identities=9% Similarity=-0.032 Sum_probs=38.4
Q ss_pred HHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCC
Q 012112 166 MEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPK 245 (471)
Q Consensus 166 l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~ 245 (471)
++.+.+.|++-|-+.=-|.--. ..|.++..+.++.+.+.--. .+-+|.|.-+.+.++..+..+.+.+++.+
T Consensus 34 v~~li~~Gv~gl~~~GttGE~~-------~Ls~~Er~~v~~~~~~~~~g--rvpviaGvg~~~t~~ai~la~~a~~~Gad 104 (297)
T 3flu_A 34 IDWHIENGTDGIVAVGTTGESA-------TLSVEEHTAVIEAVVKHVAK--RVPVIAGTGANNTVEAIALSQAAEKAGAD 104 (297)
T ss_dssp HHHHHHTTCCEEEESSTTTTGG-------GSCHHHHHHHHHHHHHHHTT--SSCEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHcCCCEEEeCccccCcc-------cCCHHHHHHHHHHHHHHhCC--CCcEEEeCCCcCHHHHHHHHHHHHHcCCC
Confidence 3344456666665544333211 12455555555555443111 13356666555666666666666666666
Q ss_pred cEEEE
Q 012112 246 HVSVY 250 (471)
Q Consensus 246 his~y 250 (471)
-+.+-
T Consensus 105 avlv~ 109 (297)
T 3flu_A 105 YTLSV 109 (297)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 55443
No 304
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=33.84 E-value=1.4e+02 Score=23.52 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=29.7
Q ss_pred CCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEe
Q 012112 383 RGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICL 418 (471)
Q Consensus 383 ~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~ 418 (471)
.+....++.+.+|.+-. .+...++.|++.|++...
T Consensus 44 ~~~s~~ela~~l~is~s-tvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQS-AVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp CCCCHHHHHHHHSSCHH-HHHHHHHHHHHHCSEEEE
T ss_pred CCCCHHHHHHHHCcCHH-HHHHHHHHHHHCCCEEEE
Confidence 57999999999999854 567789999999999764
No 305
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=33.82 E-value=8.7 Score=37.70 Aligned_cols=44 Identities=11% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEE
Q 012112 373 DVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVIC 417 (471)
Q Consensus 373 e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~ 417 (471)
..++..|....|+...++.+++|.+-. .+...++.|.++|++..
T Consensus 23 ~~iL~~l~~~~~~t~~eLa~~l~vs~~-Tv~r~l~~Le~~Glv~~ 66 (345)
T 2o0m_A 23 FQILRNIYWMQPIGRRSLSETMGITER-VLRTETDVLKQLNLIEP 66 (345)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHH-HHHHHHHHHHHCCCEEE
Confidence 456666777889999999999998853 46778999999999963
No 306
>3hjz_A Transaldolase B; parachlorococcus, marine, cyanobacteria; HET: MSE; 1.90A {Prochlorococcus marinus str}
Probab=33.81 E-value=1.1e+02 Score=29.74 Aligned_cols=136 Identities=17% Similarity=0.290 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHcC-----CCCCcEEEEEecCC-CCCH--------HHHHHHHHCCCC--EEEEccCCCCHHHHHHcCC
Q 012112 131 RFVSSILDTLTDKFG-----LSLDAEISMEMDPG-TFDA--------RKMEELMDLGVN--RVSLGVQAFQDELLKSCGR 194 (471)
Q Consensus 131 ~~l~~ll~~l~~~~~-----l~~~~eitiE~~P~-~l~~--------e~l~~l~~~Gvn--rvsiGvQS~~d~~L~~l~R 194 (471)
+.+...++.+.-.|+ .- +-.+++|++|. ..+. +..+.+.+.|+. +|-|-|=+
T Consensus 72 ~dv~~a~D~l~v~~g~ei~~~v-~G~VS~EV~~~ls~d~e~~i~eA~~l~~l~~~~gi~~~nv~IKIP~----------- 139 (334)
T 3hjz_A 72 ELIKETVDQVSVFFGKEILKII-SGRVSTEVDARLSFDTEATVKKARKLINLYKNFGIEKERILIKIAA----------- 139 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-SSCEEEECCGGGTTCHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEC-----------
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCccCCHHHHHHHHHHHHHHhhhhCCCCCcEEEEeCC-----------
Confidence 345555665555442 22 34899999985 2232 233445556777 67665543
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCC-CCCC
Q 012112 195 AHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEF-PLPT 273 (471)
Q Consensus 195 ~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~-~~p~ 273 (471)
|. +-.+|++.+.+.|+. +|+.+||.+ . -...+.+.++.-||.|-=.+.. .++. ..|.- -.+.
T Consensus 140 --T~-eGl~A~~~L~~~GI~-~N~TliFS~-~--------Qa~~aa~AGa~~ISPFVgRi~D---~~~~-~~g~~~~~~~ 202 (334)
T 3hjz_A 140 --TW-EGIKAAEILEKEGIK-CNLTLLFNF-C--------QAVTCANANITLISPFVGRILD---WHKA-KTGKTSFIGA 202 (334)
T ss_dssp --SH-HHHHHHHHHHHTTCC-EEEESCCSH-H--------HHHHHHHTTCSEECCBHHHHHH---HHHH-HHCCCCCCGG
T ss_pred --CH-HHHHHHHHHHHCCCc-EEEEEeCCH-H--------HHHHHHHcCCcEEEeeccHHHH---Hhhh-ccCCcccccc
Confidence 33 457888999999997 999999975 1 1233456688888776533321 0000 01211 1122
Q ss_pred HHHHHHHHHHHHHHHHHCCCce
Q 012112 274 ETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 274 ~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
++.-...-..+.++++..||.-
T Consensus 203 ~d~Gv~~v~~i~~~y~~~g~~T 224 (334)
T 3hjz_A 203 EDPGVISVTQIYKYFKEKGFKT 224 (334)
T ss_dssp GCHHHHHHHHHHHHHHHHTCCC
T ss_pred cCcHHHHHHHHHHHHHHcCCCC
Confidence 2333445556666777778863
No 307
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=33.77 E-value=33 Score=36.02 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=48.5
Q ss_pred HHHHHHHHHCCCCEEEEcc--CCC-----CHHHHHHcCCC-CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHH
Q 012112 163 ARKMEELMDLGVNRVSLGV--QAF-----QDELLKSCGRA-HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEE 234 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGv--QS~-----~d~~L~~l~R~-~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~ 234 (471)
.++|..|+++|||.|-|-. +|- +..-...+... -+.+++.+.|+.+++.|+. |-+|++++.=+..-.-+.+
T Consensus 175 ~~~LdyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~-VilD~V~NH~~~~~~~f~~ 253 (583)
T 1ea9_C 175 IDHLDHLSKLGVNAVYFTPLFKATTNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIR-VLLDAVFNHSGRTFPPFVD 253 (583)
T ss_dssp HHTHHHHHHHTCSEEEECCCSSCSSSSTTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCE-EEEECCCSBCCTTTHHHHH
T ss_pred HHhhHHHHHcCCCEEEECCCccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCE-EEEEEccccCCCccHHHHH
Confidence 3678888999999887752 221 11111122222 3789999999999999998 9999999976655444443
No 308
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=33.70 E-value=90 Score=29.57 Aligned_cols=122 Identities=11% Similarity=0.008 Sum_probs=52.5
Q ss_pred HHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEee----------------eecCCCCC
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLD----------------LISSLPHQ 227 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~D----------------lI~GlPgq 227 (471)
+..+.+.+.|.+-|-||.||..+-. ..+.-....+.+...++.+++.++. |++| +|-..-|.
T Consensus 33 ~~a~~~v~~GAdiIDIGgestrpga-~~v~~~eE~~Rv~pvi~~l~~~~~p-iSIDT~~~~va~aAl~aGa~iINdvsg~ 110 (280)
T 1eye_A 33 KHGLAMAAAGAGIVDVGGESSRPGA-TRVDPAVETSRVIPVVKELAAQGIT-VSIDTMRADVARAALQNGAQMVNDVSGG 110 (280)
T ss_dssp HHHHHHHHTTCSEEEEECC---------------HHHHHHHHHHHHHTTCC-EEEECSCHHHHHHHHHTTCCEEEETTTT
T ss_pred HHHHHHHHCCCCEEEECCccCCCCC-CCCCHHHHHHHHHHHHHHhhcCCCE-EEEeCCCHHHHHHHHHcCCCEEEECCCC
Confidence 4456677788888888888854320 0111111222333334444333443 4433 33333333
Q ss_pred CHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCC-HHHHHHHHHHHHHHHHHCCCce
Q 012112 228 TPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPT-ETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 228 T~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~-~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
+. ..+.++.+.+.+..-| ++.-.|+|-.-+ .......+ ..+..+.+....+.+.++|...
T Consensus 111 ~~--d~~m~~~~a~~~~~vV----lmh~~G~p~tm~--~~~~~y~dv~~~v~~~l~~~i~~a~~~Gi~~ 171 (280)
T 1eye_A 111 RA--DPAMGPLLAEADVPWV----LMHWRAVSADTP--HVPVRYGNVVAEVRADLLASVADAVAAGVDP 171 (280)
T ss_dssp SS--CTTHHHHHHHHTCCEE----EECCCCSCTTCT--TSCCCCSSHHHHHHHHHHHHHHHHHHTTCCG
T ss_pred CC--CHHHHHHHHHhCCeEE----EEcCCCCCcchh--hcCcchhHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 21 1134555566665522 222245432111 00000011 2334566777778888999874
No 309
>4ad1_A Glycosyl hydrolase family 71; glycoside hydrolase GH99, CAZY, enzyme-carbohydra interaction, mannose glycosidase inhibition; 1.90A {Bacteroides xylanisolvens} PDB: 4ad2_A* 4ad3_A* 4ad4_A* 4ad5_A*
Probab=33.63 E-value=75 Score=31.50 Aligned_cols=68 Identities=13% Similarity=0.147 Sum_probs=48.5
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCH-HHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHh
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGL-KEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVG 241 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~-~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~ 241 (471)
+..++.++++||+-+.+-.=..++ .+. ..+..+++.+.+.|+. +..|+ -+..|.+.+.+.+++..+++
T Consensus 107 ~~h~~~Ak~aGIDgf~l~w~~~~~---------~~d~~~l~~~l~aA~~~~~k-~~f~~-~~~~~~~~~~~~~di~~li~ 175 (380)
T 4ad1_A 107 TKHMDMFVMARTGVLALTWWNEQD---------ETEAKRIGLILDAADKKKIK-VCFHL-EPYPSRNVQNLRENIVKLIT 175 (380)
T ss_dssp HHHHHHHHHHTEEEEEEEECCCCS---------HHHHHHHHHHHHHHHHTTCE-EEEEE-CCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEecCCCC---------cccHHHHHHHHHHHHHcCCe-EEEEE-CCCCCCChHHHHHHHHHHHH
Confidence 477889999999988775433331 122 4455677778888997 77663 46678888899999888864
No 310
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=33.57 E-value=51 Score=31.11 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=51.2
Q ss_pred CCHhhHHHHHHHHhccccC-CCCHhh---HHHHhCCChHHHHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhc
Q 012112 365 IDAKDLAMDVLMLSFRTAR-GVDLKS---FGETFGCSLVHTLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKI 440 (471)
Q Consensus 365 l~~~~~~~e~~~~~Lr~~~-gi~~~~---~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~ 440 (471)
++....+.-.+---++... .|.... +-+.||++-. .....+.+|+++|||+.+..
T Consensus 22 ~~a~Sli~tl~Gd~~~~~g~~i~~~~Li~l~~~~Gi~~~-avR~Al~RL~~~G~l~~~~~-------------------- 80 (266)
T 3l09_A 22 LKLWSVLVTCLGDVSRDGVIEVSGVALSSFVERMGLQPQ-AMRVALHRLKRDGWVESRRL-------------------- 80 (266)
T ss_dssp CCHHHHHHHHHHHHHHTTCCCEEHHHHHHHHHHTTCCHH-HHHHHHHHHHHTTSEEEEEE--------------------
T ss_pred CChhHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCch-HHHHHHHHHHHCCCeeeeec--------------------
Confidence 4555555544432233332 366655 5567888853 56788999999999986532
Q ss_pred ccccceeeecCchhhchHHHHHHHHH
Q 012112 441 GNRLAYFRLSDPEGFLLSNELISHAF 466 (471)
Q Consensus 441 ~~~~~~~~lt~~~G~~~~n~i~~~~~ 466 (471)
+|.++.+|| ++|+.........++
T Consensus 81 -Gr~~~Y~Lt-~~g~~~l~~~~~ri~ 104 (266)
T 3l09_A 81 -GRVGFHRLS-DSALTQTRAVAGRIY 104 (266)
T ss_dssp -TTEEEEEEC-HHHHHHHHTTHHHHH
T ss_pred -CCcceEEEC-HHHHHHHHHHHHHhc
Confidence 344589997 999988876655544
No 311
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=33.55 E-value=31 Score=36.30 Aligned_cols=72 Identities=13% Similarity=0.100 Sum_probs=48.4
Q ss_pred HHHHHHHHCCCCEEEEcc--CCCC-----HHHHHHcCCC-CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHH
Q 012112 164 RKMEELMDLGVNRVSLGV--QAFQ-----DELLKSCGRA-HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEES 235 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGv--QS~~-----d~~L~~l~R~-~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~ 235 (471)
++|..|+++|||.|-|-. ++-. ..-...+... -+.+++.+.|+.+++.|+. |-+|++++.=+..-..|.+.
T Consensus 180 ~~LdyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~-VilD~V~NH~~~~~~~f~~~ 258 (588)
T 1j0h_A 180 DHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIR-VMLDAVFNHCGYEFAPFQDV 258 (588)
T ss_dssp HTHHHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCE-EEEEECCSBCCTTCHHHHHH
T ss_pred HHHHHHHHcCCCEEEECCcccCCCCCCcCccccCccCccCCCHHHHHHHHHHHHHCCCE-EEEEECcCcCcccchhHHHH
Confidence 667888888888886652 2111 1011122222 3789999999999999998 99999999766655555544
Q ss_pred H
Q 012112 236 L 236 (471)
Q Consensus 236 l 236 (471)
+
T Consensus 259 ~ 259 (588)
T 1j0h_A 259 W 259 (588)
T ss_dssp H
T ss_pred H
Confidence 3
No 312
>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A
Probab=33.55 E-value=75 Score=34.32 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=43.8
Q ss_pred HHHHHHHCCCCEEEEc-cCCC-CHHHHH----------------HcCCCC-C-------HHHHHHHHHHHHHcCCCeeEe
Q 012112 165 KMEELMDLGVNRVSLG-VQAF-QDELLK----------------SCGRAH-G-------LKEVYEAIEIVKLCGVENWSL 218 (471)
Q Consensus 165 ~l~~l~~~GvnrvsiG-vQS~-~d~~L~----------------~l~R~~-t-------~~~~~~ai~~~~~~G~~~v~~ 218 (471)
.|..|+++|||.|.|- |..+ ++..+. .+.... + .+++.+.|+.+++.|+. |-+
T Consensus 207 ~l~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~~wGY~~~~y~~~~~~yGt~~~~~~~~~dfk~lv~~~H~~Gi~-Vil 285 (718)
T 2vr5_A 207 MISYLKDLGITTVELMPVFHFIDQRFLTDKGLTNYWGYDPINFFSPECRYSSTGCLGGQVLSFKKMVNELHNAGIE-VII 285 (718)
T ss_dssp HHHHHHHHTCCEEEECCCBCBCCCHHHHTTTCCCSSCCCBSCSSSBCGGGCSSCTTTHHHHHHHHHHHHHHTTTCE-EEE
T ss_pred hhHHHHHcCCCeEEEeCCEecCccccccccCCcCccCcCcccCcccChhhcCCCCCCchHHHHHHHHHHHHHCCCE-EEE
Confidence 3999999999999875 3333 222211 111111 3 58999999999999998 999
Q ss_pred eeecCCCCC
Q 012112 219 DLISSLPHQ 227 (471)
Q Consensus 219 DlI~GlPgq 227 (471)
|++++.-+.
T Consensus 286 DvV~NH~~~ 294 (718)
T 2vr5_A 286 DVVYNHTAE 294 (718)
T ss_dssp EECCSCCSS
T ss_pred EeccCcccC
Confidence 999986543
No 313
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=33.45 E-value=19 Score=33.05 Aligned_cols=96 Identities=14% Similarity=0.194 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCCCCCcEEEEEe-cCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 012112 135 SILDTLTDKFGLSLDAEISMEM-DPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGV 213 (471)
Q Consensus 135 ~ll~~l~~~~~l~~~~eitiE~-~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~ 213 (471)
++++.+++..... ..+.+-+ || ++.++.+.++|++.|.++.+++. .+...+.++.+++.|.
T Consensus 52 ~~v~~lr~~~~~~--~~vhlmv~dp----~~~i~~~~~aGadgv~vh~e~~~------------~~~~~~~~~~i~~~g~ 113 (230)
T 1tqj_A 52 LIVDAIRPLTKKT--LDVHLMIVEP----EKYVEDFAKAGADIISVHVEHNA------------SPHLHRTLCQIRELGK 113 (230)
T ss_dssp HHHHHHGGGCCSE--EEEEEESSSG----GGTHHHHHHHTCSEEEEECSTTT------------CTTHHHHHHHHHHTTC
T ss_pred HHHHHHHhhcCCc--EEEEEEccCH----HHHHHHHHHcCCCEEEECccccc------------chhHHHHHHHHHHcCC
Confidence 5667777654322 2333333 45 45788999999999999998331 0134467788888988
Q ss_pred CeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCCh
Q 012112 214 ENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTK 259 (471)
Q Consensus 214 ~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~ 259 (471)
. +.+.+ -|+...+.++ .+.+ ++|.| |-.++.||+-
T Consensus 114 ~-~gv~~---~p~t~~e~~~----~~~~-~~D~v--~~msv~pg~g 148 (230)
T 1tqj_A 114 K-AGAVL---NPSTPLDFLE----YVLP-VCDLI--LIMSVNPGFG 148 (230)
T ss_dssp E-EEEEE---CTTCCGGGGT----TTGG-GCSEE--EEESSCC---
T ss_pred c-EEEEE---eCCCcHHHHH----HHHh-cCCEE--EEEEeccccC
Confidence 6 66655 3443323222 1222 46644 4556677754
No 314
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=33.34 E-value=17 Score=36.73 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeeEeeeecCC
Q 012112 194 RAHGLKEVYEAIEIVKLCGVENWSLDLISSL 224 (471)
Q Consensus 194 R~~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl 224 (471)
|--|.++.++.|+.|++.|++ |-+|+++..
T Consensus 72 ~~Gt~~df~~lv~~aH~~Gi~-VilD~V~NH 101 (496)
T 4gqr_A 72 RSGNEDEFRNMVTRCNNVGVR-IYVDAVINH 101 (496)
T ss_dssp TTBCHHHHHHHHHHHHHTTCE-EEEEECCSE
T ss_pred CCCCHHHHHHHHHHHHHCCCE-EEEEEccCc
Confidence 334899999999999999998 999999986
No 315
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=32.96 E-value=1.7e+02 Score=26.92 Aligned_cols=129 Identities=8% Similarity=0.040 Sum_probs=75.5
Q ss_pred EecCCC-CCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCe-------------eEeee
Q 012112 155 EMDPGT-FDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVEN-------------WSLDL 220 (471)
Q Consensus 155 E~~P~~-l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~-------------v~~Dl 220 (471)
-.+|+. .+.+.++.+.++|.+-|-+|. ..+.+.+++.+.++.+|+....- +..-|
T Consensus 17 ~~DPdk~~~~~~l~~~~~~GtDaI~vGg-----------s~gvt~~~~~~~v~~ik~~~~Piil~p~~~~~~~~gaD~il 85 (235)
T 3w01_A 17 KLDPAKHISDDDLDAICMSQTDAIMIGG-----------TDDVTEDNVIHLMSKIRRYPLPLVLEISNIESVMPGFDFYF 85 (235)
T ss_dssp EECTTSCCCHHHHHHHHTSSCSEEEECC-----------SSCCCHHHHHHHHHHHTTSCSCEEEECCCSTTCCTTCSEEE
T ss_pred eECCCCcCCHHHHHHHHHcCCCEEEECC-----------cCCcCHHHHHHHHHHhcCcCCCEEEecCCHHHhhcCCCEEE
Confidence 358876 488999999999999999999 33567888888888888754441 11223
Q ss_pred ecCCCCCCHHHH--HHHHHHHHhCCC-----CcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q 012112 221 ISSLPHQTPQMW--EESLRRTVGAQP-----KHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGY 293 (471)
Q Consensus 221 I~GlPgqT~e~~--~~~l~~~~~l~p-----~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy 293 (471)
+.-+|......| ..-++.+.+.+. +-|..--+.+.|+|.-.+.- +..+.|+. +....|..+.+.+-..||
T Consensus 86 ~pslln~~~~~~i~g~~~~a~~~~gl~~~~~e~i~~gYivv~p~s~v~~v~--~a~~~~~~-e~iaa~A~~a~~~~g~~~ 162 (235)
T 3w01_A 86 VPTVLNSTDVAFHNGTLLEALKTYGHSIDFEEVIFEGYVVCNADSKVAKHT--KANTDLTT-EDLEAYAQMVNHMYRLPV 162 (235)
T ss_dssp EEEETTBSSGGGTTHHHHHHHHHHGGGCCGGGEEEEEEEECCSSSHHHHHT--TBCCCCCH-HHHHHHHHHHHHTTCCSE
T ss_pred EccccCCCCcchhhhHHHHHHHHcCCCCcccceeeeeEEEECCCCChhhcc--cCCcCCCH-HHHHHHHHHHHHHcCCCE
Confidence 333444444555 223334555665 44443334466777766542 22233443 334445554455555565
Q ss_pred ceec
Q 012112 294 RHYE 297 (471)
Q Consensus 294 ~~ye 297 (471)
...|
T Consensus 163 vY~e 166 (235)
T 3w01_A 163 MYIE 166 (235)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5443
No 316
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=32.85 E-value=2.6e+02 Score=26.24 Aligned_cols=78 Identities=5% Similarity=-0.038 Sum_probs=41.2
Q ss_pred HHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCC
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQ 243 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~ 243 (471)
..++.+.+.|++-|-+.--|+--.. .|.++-.+.++.+.+.--. .+-+|.|.-+.+.++..+..+.+.+++
T Consensus 27 ~lv~~li~~Gv~gl~v~GttGE~~~-------Lt~~Er~~v~~~~~~~~~g--rvpviaGvg~~~t~~ai~la~~a~~~G 97 (292)
T 3daq_A 27 AHVNFLLENNAQAIIVNGTTAESPT-------LTTDEKELILKTVIDLVDK--RVPVIAGTGTNDTEKSIQASIQAKALG 97 (292)
T ss_dssp HHHHHHHHTTCCEEEESSGGGTGGG-------SCHHHHHHHHHHHHHHHTT--SSCEEEECCCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECcccccccc-------CCHHHHHHHHHHHHHHhCC--CCcEEEeCCcccHHHHHHHHHHHHHcC
Confidence 3444455667777666543332111 2445555555555443111 133566665566666666666777777
Q ss_pred CCcEEEE
Q 012112 244 PKHVSVY 250 (471)
Q Consensus 244 p~his~y 250 (471)
.|.+.+-
T Consensus 98 adavlv~ 104 (292)
T 3daq_A 98 ADAIMLI 104 (292)
T ss_dssp CSEEEEE
T ss_pred CCEEEEC
Confidence 7665544
No 317
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A
Probab=32.79 E-value=26 Score=37.07 Aligned_cols=64 Identities=8% Similarity=0.035 Sum_probs=44.2
Q ss_pred HHHHHHHHHCCCCEEEEcc--CC---------CCHHHHHHcCCC-CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCC
Q 012112 163 ARKMEELMDLGVNRVSLGV--QA---------FQDELLKSCGRA-HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQ 227 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGv--QS---------~~d~~L~~l~R~-~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgq 227 (471)
.++|..|+++||+-|-|.. ++ ++..-...+... .|.+++.+.++.|++.|++ |-+|+++..-+.
T Consensus 151 ~~~Ldyl~~LGv~aI~l~Pi~~~~~~~~~~~GY~~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~-VilD~V~NH~~~ 226 (601)
T 3edf_A 151 IDHLDYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMG-LIQDVVLSHIGK 226 (601)
T ss_dssp HHTHHHHHHTTCCEEEESCCEECCCSSSGGGCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCE-EEEEECCSBCCT
T ss_pred HHHHHHHHHcCCCEEEECccccCCCCCCCCCCcCccccccccccCCCHHHHHHHHHHHHHcCCE-EEEEECCcccCC
Confidence 4677778888888876642 11 111111223333 3789999999999999998 999999986554
No 318
>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics, JOI for structural genomics, JCSG; HET: GOL; 2.40A {Thermotoga maritima} SCOP: c.1.10.1
Probab=32.14 E-value=1.2e+02 Score=27.73 Aligned_cols=76 Identities=17% Similarity=0.131 Sum_probs=47.4
Q ss_pred EEEEEecCCCCCHHHHHH---HHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCC
Q 012112 151 EISMEMDPGTFDARKMEE---LMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQ 227 (471)
Q Consensus 151 eitiE~~P~~l~~e~l~~---l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgq 227 (471)
.+++|+...+ +++.++. |.+.. .+|-|-|= .| .+-.+|++.+.+.|+. +|+.+||.+. |
T Consensus 65 ~VS~EV~a~d-~e~mi~eA~~L~~~~-~nv~IKIP-------------~T-~eGl~Ai~~L~~eGI~-vNvTliFS~~-Q 126 (230)
T 1vpx_A 65 PVSAEVVSLD-YEGMVREARELAQIS-EYVVIKIP-------------MT-PDGIKAVKTLSAEGIK-TNVTLVFSPA-Q 126 (230)
T ss_dssp CEEEECSCCS-HHHHHHHHHHHHTTC-TTEEEEEE-------------SS-HHHHHHHHHHHHTTCC-EEEEEECSHH-H
T ss_pred cEEEEEccCC-HHHHHHHHHHHHHhC-CCEEEEeC-------------CC-HHHHHHHHHHHHCCCC-EEEEEeCCHH-H
Confidence 6888887322 3333333 33333 33444332 33 4567899999999998 9999999862 2
Q ss_pred CHHHHHHHHHHHHhCCCCcEEEEec
Q 012112 228 TPQMWEESLRRTVGAQPKHVSVYDL 252 (471)
Q Consensus 228 T~e~~~~~l~~~~~l~p~his~y~l 252 (471)
.-.+.+.++.-||.|-=
T Consensus 127 --------A~laa~AGa~~iSpFVg 143 (230)
T 1vpx_A 127 --------AILAAKAGATYVSPFVG 143 (230)
T ss_dssp --------HHHHHHHTCSEEEEBHH
T ss_pred --------HHHHHhCCCeEEEeccc
Confidence 22233568888887753
No 319
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=32.13 E-value=69 Score=28.17 Aligned_cols=52 Identities=4% Similarity=-0.091 Sum_probs=37.0
Q ss_pred hHHHHHHHHhcccc-CCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCc
Q 012112 369 DLAMDVLMLSFRTA-RGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEW 421 (471)
Q Consensus 369 ~~~~e~~~~~Lr~~-~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~ 421 (471)
..+.+++...++.. .+....++++.+|.+-. .....|+.|++.|++....+.
T Consensus 8 ~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~-tv~~~l~~Le~~G~i~~~~~~ 60 (196)
T 3k2z_A 8 RKVLLFIEEFIEKNGYPPSVREIARRFRITPR-GALLHLIALEKKGYIERKNGK 60 (196)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHH-HHHHHHHHHHHTTSEECC---
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcH-HHHHHHHHHHHCCCEEecCCC
Confidence 34455555445433 35899999999999865 578889999999999875443
No 320
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=32.07 E-value=3.2e+02 Score=26.06 Aligned_cols=116 Identities=15% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCCCCCCCCeeEEEEcCCC--CCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCC--CHHHHHHHH
Q 012112 95 IQLLCREIIATKPGHKTSPPLETVFFGGGT--PSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTF--DARKMEELM 170 (471)
Q Consensus 95 v~~l~~Ei~~~~~~~~~~~~v~~i~fGGGT--ps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l--~~e~l~~l~ 170 (471)
.+++.+-++.+.+.. ++.++..|.| ...|+.++-.++++.+.+..+ ....+-+-+.-.+. +-+..+..+
T Consensus 31 ~~~l~~lv~~li~~G-----v~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~--grvpviaGvg~~~t~~ai~la~~a~ 103 (318)
T 3qfe_A 31 LASQERYYAYLARSG-----LTGLVILGTNAEAFLLTREERAQLIATARKAVG--PDFPIMAGVGAHSTRQVLEHINDAS 103 (318)
T ss_dssp HHHHHHHHHHHHTTT-----CSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHC--TTSCEEEECCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-----CCEEEeCccccChhhCCHHHHHHHHHHHHHHhC--CCCcEEEeCCCCCHHHHHHHHHHHH
Q ss_pred HCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHc-CCCeeEeeeecCCCCCC
Q 012112 171 DLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLC-GVENWSLDLISSLPHQT 228 (471)
Q Consensus 171 ~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~-G~~~v~~DlI~GlPgqT 228 (471)
++|++-+.+-.-.+ .+|..+.+.+.+-.+.+.++ ++.- ++|..|+-|
T Consensus 104 ~~Gadavlv~~P~y-------~~kp~~~~~l~~~f~~ia~a~~lPi----ilYn~P~~t 151 (318)
T 3qfe_A 104 VAGANYVLVLPPAY-------FGKATTPPVIKSFFDDVSCQSPLPV----VIYNFPGVC 151 (318)
T ss_dssp HHTCSEEEECCCCC----------CCCHHHHHHHHHHHHHHCSSCE----EEEECCC--
T ss_pred HcCCCEEEEeCCcc-------cCCCCCHHHHHHHHHHHHhhCCCCE----EEEeCCccc
No 321
>2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide degradation, glycoside hydrolase family 5, hydrolase, glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB: 2ckr_A*
Probab=31.98 E-value=3.1e+02 Score=25.42 Aligned_cols=112 Identities=10% Similarity=0.087 Sum_probs=67.5
Q ss_pred CCHHHHHHHH-HCCCCEEEEcc--CC----CCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCC---CHH
Q 012112 161 FDARKMEELM-DLGVNRVSLGV--QA----FQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQ---TPQ 230 (471)
Q Consensus 161 l~~e~l~~l~-~~GvnrvsiGv--QS----~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgq---T~e 230 (471)
.+++.++.|+ ++|+|.|-+.+ +. .+++. -.+.+.++++.+.+.|+. |-+|+--.-||. +.+
T Consensus 43 ~~~~d~~~l~~~~G~N~vRi~~~~~~~~~~~~~~~--------~l~~ld~~v~~a~~~Gl~-vild~h~~~~g~~~~~~~ 113 (306)
T 2cks_A 43 LTDSSLDALAYDWKADIIRLSMYIQEDGYETNPRG--------FTDRMHQLIDMATARGLY-VIVDWHILTPGDPHYNLD 113 (306)
T ss_dssp CSHHHHHHHHHTSCCSEEEEEEESSTTSGGGCHHH--------HHHHHHHHHHHHHTTTCE-EEEEEECCSSCCGGGGHH
T ss_pred CCHHHHHHHHHHcCCCEEEEEeeecCCCcccCHHH--------HHHHHHHHHHHHHHCCCE-EEEEecCCCCCCcccCHH
Confidence 4678888886 58999555544 31 12210 125677889999999997 778875422443 456
Q ss_pred HHHHHHHHHHh-C-CCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q 012112 231 MWEESLRRTVG-A-QPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 231 ~~~~~l~~~~~-l-~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
.+.+-++.+.+ + +-++|- |.+.=||... +-+...+.++.+.+.+++.+-.+
T Consensus 114 ~~~~~~~~ia~~y~~~~~V~-~el~NEP~~~-------------~~~~~~~~~~~~~~~IR~~dp~~ 166 (306)
T 2cks_A 114 RAKTFFAEIAQRHASKTNVL-YEIANEPNGV-------------SWASIKSYAEEVIPVIRQRDPDS 166 (306)
T ss_dssp HHHHHHHHHHHHHTTCSSEE-EECCSCCCSS-------------CHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhCCCCcEE-EEcCCCCCCC-------------CHHHHHHHHHHHHHHHHHhCCCC
Confidence 66665555543 2 234574 8888887542 12234456667777777766543
No 322
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=31.75 E-value=1.9e+02 Score=28.37 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCC--CCCHHHHHHHH
Q 012112 93 NYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPG--TFDARKMEELM 170 (471)
Q Consensus 93 ~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~--~l~~e~l~~l~ 170 (471)
.|+-.+.+.+.... .+.|.+. +|-.++.|..+.++++.+++.++-.+...+.+-++=+ .-....+..+
T Consensus 157 ~~~~~~~~~~~~~G--------a~~i~l~-DT~G~~~P~~~~~lv~~l~~~~~~~~~~~l~~H~Hnd~GlAvAN~laAv- 226 (370)
T 3rmj_A 157 DFLAEICGAVIEAG--------ATTINIP-DTVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAAL- 226 (370)
T ss_dssp HHHHHHHHHHHHHT--------CCEEEEE-CSSSCCCHHHHHHHHHHHHHHSTTGGGSEEEEECBCTTSCHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcC--------CCEEEec-CccCCcCHHHHHHHHHHHHHhCCCcCceEEEEEeCCCCChHHHHHHHHH-
Confidence 45555555554331 4567775 4777778888888888888876421124566655322 2234445544
Q ss_pred HCCCCEEEEccCCCC
Q 012112 171 DLGVNRVSLGVQAFQ 185 (471)
Q Consensus 171 ~~GvnrvsiGvQS~~ 185 (471)
++|+++|.--+-.+-
T Consensus 227 ~aGa~~vd~tv~GlG 241 (370)
T 3rmj_A 227 KGGARQVECTVNGLG 241 (370)
T ss_dssp HTTCCEEEEBGGGCS
T ss_pred HhCCCEEEEeccccC
Confidence 478888876665543
No 323
>2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3
Probab=31.75 E-value=70 Score=30.50 Aligned_cols=95 Identities=7% Similarity=0.089 Sum_probs=53.4
Q ss_pred CHHHHHHHHHCCCCEEEEc--cCCCCHHH------HHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecC---CCCC---
Q 012112 162 DARKMEELMDLGVNRVSLG--VQAFQDEL------LKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISS---LPHQ--- 227 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiG--vQS~~d~~------L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~G---lPgq--- 227 (471)
.++.++.|+++|+|-|-+. .+++.... ....++ ...+.+.++++.++++|+. |-+++--| .||.
T Consensus 47 ~~~d~~~~k~~G~N~vR~~~~~~~~~~p~~~~~g~~~~~~~-~~~~~ld~~~~~a~~~Gi~-vil~l~~~~~~~~g~~~~ 124 (353)
T 2c0h_A 47 FESTLSDMQSHGGNSVRVWLHIEGESTPEFDNNGYVTGIDN-TLISDMRAYLHAAQRHNIL-IFFTLWNGAVKQSTHYRL 124 (353)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEETTSSSSEECTTSCEEECCT-THHHHHHHHHHHHHHTTCE-EEEEEEECSCCCTTHHHH
T ss_pred HHHHHHHHHHcCCCEEEEceecCCccCccccCCCccccCCH-HHHHHHHHHHHHHHHcCCE-EEEEccCccccCCCcccc
Confidence 4578899999999966554 44221000 000011 3356788999999999997 77776332 2442
Q ss_pred -----CHHHHHHHH----HHHHh-CC-CCcEEEEeccccCCC
Q 012112 228 -----TPQMWEESL----RRTVG-AQ-PKHVSVYDLQVEQGT 258 (471)
Q Consensus 228 -----T~e~~~~~l----~~~~~-l~-p~his~y~l~~~pgT 258 (471)
+.+.+++-+ +.+.+ ++ -+.|-.+.+.=||+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~a~ry~~~p~i~~w~l~NEp~~ 166 (353)
T 2c0h_A 125 NGLMVDTRKLQSYIDHALKPMANALKNEKALGGWDIMNEPEG 166 (353)
T ss_dssp HHHHHCHHHHHHHHHHTHHHHHHHHTTCTTEEEEEEEECGGG
T ss_pred cceEeCHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCC
Confidence 112222222 33332 22 235777888877754
No 324
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=31.65 E-value=1.4e+02 Score=23.99 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=30.9
Q ss_pred cCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEe
Q 012112 382 ARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICL 418 (471)
Q Consensus 382 ~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~ 418 (471)
..++...++.+.+|.+-. .....++.|++.|+|...
T Consensus 39 ~~~~t~~ela~~l~~~~s-tvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 39 DKPLTISDIMEELKISKG-NVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp SSCEEHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHCcCHH-HHHHHHHHHHHCCCEEEE
Confidence 468999999999999854 467789999999999875
No 325
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=31.60 E-value=34 Score=35.95 Aligned_cols=73 Identities=12% Similarity=0.117 Sum_probs=49.5
Q ss_pred HHHHHHHHHCCCCEEEEcc--CCC-----CHHHHHHcCCC-CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHH
Q 012112 163 ARKMEELMDLGVNRVSLGV--QAF-----QDELLKSCGRA-HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEE 234 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGv--QS~-----~d~~L~~l~R~-~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~ 234 (471)
.++|..|+++|||.|-|-. ++- +..-...+... -+.+++.+.|+.+++.|+. |-+|++++.=+..-.-+.+
T Consensus 176 ~~~LdyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~id~~~Gt~~dfk~lv~~~H~~Gi~-VilD~V~NH~~~~~~~f~~ 254 (585)
T 1wzl_A 176 IDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIK-IILDAVFNHAGDQFFAFRD 254 (585)
T ss_dssp HHTHHHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCE-EEEEECCSBCCTTSHHHHH
T ss_pred HHHhHHHHHcCCCEEEECCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCE-EEEEEcCCcCCCccHHHHH
Confidence 3678888999999887652 111 11111122222 3789999999999999998 9999999986665444544
Q ss_pred HH
Q 012112 235 SL 236 (471)
Q Consensus 235 ~l 236 (471)
.+
T Consensus 255 ~~ 256 (585)
T 1wzl_A 255 VL 256 (585)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 326
>2d0j_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 2; rossmann-like fold, glucuronyltransferase; 2.00A {Homo sapiens}
Probab=31.58 E-value=1.2e+02 Score=28.25 Aligned_cols=90 Identities=12% Similarity=0.033 Sum_probs=58.5
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCC
Q 012112 118 VFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHG 197 (471)
Q Consensus 118 i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t 197 (471)
||+- |||.-.+.+..+|.+.....-.+.+-.-|-+|..+ ..++..-+.|++.|+....+.+.+-.. .+.-++...
T Consensus 5 I~vV--TPTy~R~~Q~a~LtRLa~TL~~Vp~l~WIVVEd~~-~~~~~v~~lL~~sgl~y~HL~~~~~~~--~~~~~~prg 79 (246)
T 2d0j_A 5 IYAI--TPTYSRPVQKAELTRLANTFRQVAQLHWILVEDAA-ARSELVSRFLARAGLPSTHLHVPTPRR--YKRPGLPRA 79 (246)
T ss_dssp EEEE--EEECCSTTHHHHHHHHHHHHTTSTTEEEEEEESSS-SCCHHHHHHHHHSCSCEEEEECCCCCC------CCCCC
T ss_pred EEEE--eCCCCccchhHHHHHHHHHHhcCCceEEEEEcCCC-CCCHHHHHHHHHcCCceEEEecCCccc--cCCCCCcch
Confidence 4443 78887776766665554443334443455556544 357778899999999999999876321 122233456
Q ss_pred HHHHHHHHHHHHHcC
Q 012112 198 LKEVYEAIEIVKLCG 212 (471)
Q Consensus 198 ~~~~~~ai~~~~~~G 212 (471)
..+--.|++.+++..
T Consensus 80 ~~qRn~AL~~Ir~~~ 94 (246)
T 2d0j_A 80 TEQRNAGLAWLRQRH 94 (246)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhc
Confidence 788888999999874
No 327
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=31.46 E-value=72 Score=32.78 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeeEeeeecCCCC
Q 012112 196 HGLKEVYEAIEIVKLCGVENWSLDLISSLPH 226 (471)
Q Consensus 196 ~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg 226 (471)
-+.+++.+.|+.+++.|+. |-+|++++.-+
T Consensus 79 Gt~~dfk~Lv~~aH~~Gi~-VilD~V~NH~~ 108 (515)
T 1hvx_A 79 GTKAQYLQAIQAAHAAGMQ-VYADVVFDHKG 108 (515)
T ss_dssp CCHHHHHHHHHHHHHTTCE-EEEEECCSEEC
T ss_pred CCHHHHHHHHHHHHHCCCE-EEEEEecCCcc
Confidence 4799999999999999998 99999988643
No 328
>1qox_A Beta-glucosidase; hydrolase, cellulose degradation; 2.7A {Bacillus circulans} SCOP: c.1.8.4
Probab=31.45 E-value=39 Score=34.46 Aligned_cols=92 Identities=16% Similarity=0.145 Sum_probs=58.7
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCC-CCH---HHHHHHHHHHHHcCCCeeEeeee-cCCCC-----------
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRA-HGL---KEVYEAIEIVKLCGVENWSLDLI-SSLPH----------- 226 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~-~t~---~~~~~ai~~~~~~G~~~v~~DlI-~GlPg----------- 226 (471)
++.++.|+++|++.+.+++ |- .++.-. |++ .+. +-..+.++.++++|++ +-++|- +++|-
T Consensus 61 ~eDi~lm~~~G~~~~R~si-~W-~ri~P~-G~g~~n~~Gl~~y~~~id~l~~~gI~-p~vtL~h~d~P~~l~~~ggw~~r 136 (449)
T 1qox_A 61 EEDVQLLKDLGVKVYRFSI-SW-PRVLPQ-GTGEVNRAGLDYYHRLVDELLANGIE-PFCTLYHWDLPQALQDQGGWGSR 136 (449)
T ss_dssp HHHHHHHHHHTCSEEEEEC-CH-HHHSTT-SSSSCCHHHHHHHHHHHHHHHHTTCE-EEEEEESSCCBHHHHTTTGGGST
T ss_pred HHHHHHHHhcCCCeEEecC-cH-HHhCcC-CCCCcCHHHHHHHHHHHHHHHHcCCe-EEEEeCCCcccHHHHhcCCCCCc
Confidence 7899999999999888887 33 223222 222 244 4567889999999997 777775 66762
Q ss_pred CCHHHHHHHHHHHHhCCCCcEEEEeccccCCC
Q 012112 227 QTPQMWEESLRRTVGAQPKHVSVYDLQVEQGT 258 (471)
Q Consensus 227 qT~e~~~~~l~~~~~l~p~his~y~l~~~pgT 258 (471)
++.+.+.+-.+.+.+.=-++|..+...-||+.
T Consensus 137 ~~~~~f~~ya~~~~~~~gd~V~~W~t~NEp~~ 168 (449)
T 1qox_A 137 ITIDAFAEYAELMFKELGGKIKQWITFNEPWC 168 (449)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCEEEEEECHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCCceEEEccCCcc
Confidence 24555555555554432245655555556654
No 329
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Probab=31.27 E-value=3e+02 Score=26.56 Aligned_cols=127 Identities=8% Similarity=0.065 Sum_probs=65.5
Q ss_pred eeEEEEcCCCCCCCCHHHHH--------HHHHHHH-HHcCCC-CCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCC
Q 012112 115 LETVFFGGGTPSLVPPRFVS--------SILDTLT-DKFGLS-LDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAF 184 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~--------~ll~~l~-~~~~l~-~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~ 184 (471)
++.|++.+...++++++.++ ++++.++ +..+.. .+..+.+-+. . +...+..|++.|++-+++. .+.
T Consensus 211 ad~i~i~D~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~g~~~~p~i~~~~--G-~~~~l~~l~~~g~d~i~~d-~~~ 286 (367)
T 1r3s_A 211 AQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIFAK--D-GHFALEELAQAGYEVVGLD-WTV 286 (367)
T ss_dssp CSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHHHHHTTCCCCCEEEEET--T-CGGGHHHHTTSSCSEEECC-TTS
T ss_pred CCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhhhccccCCCCCeEEEcC--C-cHHHHHHHHhcCCCEEEeC-CCC
Confidence 56777766666788997654 4555565 431000 0123333321 1 2568899999999988763 223
Q ss_pred CHHHHHH-cCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhC-CC-CcEEEEeccccCCChhh
Q 012112 185 QDELLKS-CGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGA-QP-KHVSVYDLQVEQGTKFG 261 (471)
Q Consensus 185 ~d~~L~~-l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l-~p-~his~y~l~~~pgT~l~ 261 (471)
|....+. ++... .-..|+...+++ -|.+++++.++.+++. +. .||---...+.|+|+..
T Consensus 287 dl~~a~~~~g~~~--------------~l~Gnldp~~L~----gt~e~i~~~v~~~l~~~g~~g~I~~~ghgi~~~~p~e 348 (367)
T 1r3s_A 287 APKKARECVGKTV--------------TLQGNLDPCALY----ASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPE 348 (367)
T ss_dssp CHHHHHHHHCSSS--------------EEEEEECGGGGG----SCHHHHHHHHHHHHHHHCSSSEEEEESSCCCTTCCHH
T ss_pred CHHHHHHHcCCCe--------------EEEeCCChHHhc----CCHHHHHHHHHHHHHHhCCCCeeecCCCCCCCCCCHH
Confidence 3322221 22110 001123333333 3777777777776653 43 34433334566777765
Q ss_pred hc
Q 012112 262 IL 263 (471)
Q Consensus 262 ~~ 263 (471)
+.
T Consensus 349 nv 350 (367)
T 1r3s_A 349 HV 350 (367)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 330
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=31.16 E-value=67 Score=26.33 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHHHHHH
Q 012112 401 TLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNELISHA 465 (471)
Q Consensus 401 ~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i~~~~ 465 (471)
.+-+.|.+|+++|||...... .+ +.+.-+.+|| ++|+........++
T Consensus 54 tlY~~L~rLe~~GlI~~~~~~---------------~~--~~~rk~Y~LT-~~Gr~~l~~~~~~~ 100 (123)
T 3ri2_A 54 TLYPLMRRLESQGLLASEWDN---------------GG--SKPRKYYRTT-DEGLRVLREVEAQW 100 (123)
T ss_dssp HHHHHHHHHHHTTSEEEEEEE---------------CS--SCEEEEEEEC-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCEEEEecc---------------CC--CCCceEEEEC-HHHHHHHHHHHHHH
Confidence 466899999999999864210 00 1112267897 99999988765443
No 331
>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A
Probab=31.11 E-value=3e+02 Score=25.55 Aligned_cols=106 Identities=14% Similarity=0.154 Sum_probs=66.0
Q ss_pred CCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHH--------
Q 012112 160 TFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQM-------- 231 (471)
Q Consensus 160 ~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~-------- 231 (471)
.++.+ +|+++|++.+-+| +-+-+..++ -+.+.+-+-++.+.++|+.- |+-. |||.++
T Consensus 77 EiS~~---mL~d~G~~~ViiG----HSERR~~f~--Etd~~v~~Kv~~Al~~GL~p-----I~Cv-GEtleere~g~t~~ 141 (255)
T 1tre_A 77 ETSAA---MLKDIGAQYIIIG----HSERRTYHK--ESDELIAKKFAVLKEQGLTP-----VLCI-GETEAENEAGKTEE 141 (255)
T ss_dssp CCCHH---HHHHHTCCEEEES----CHHHHHHSC--CCHHHHHHHHHHHHHTTCEE-----EEEE-CCCHHHHHTTCHHH
T ss_pred cCCHH---HHHHcCCCEEEEC----ccccccccC--CCHHHHHHHHHHHHHCCCEE-----EEEc-CCcHHHHhcCCHHH
Confidence 35665 4566699999987 555555543 56788888899999999862 2222 777765
Q ss_pred -HHHHHHHHH-hCCCCc----EEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 012112 232 -WEESLRRTV-GAQPKH----VSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSS 290 (471)
Q Consensus 232 -~~~~l~~~~-~l~p~h----is~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~ 290 (471)
+.+-|+.++ .+.++. +-.| || .+- -|.-..++.++..++....++.|.+
T Consensus 142 vv~~Ql~~~l~~~~~~~~~~vvIAY----EP---vWA---IGTG~~Atpe~a~evh~~IR~~l~~ 196 (255)
T 1tre_A 142 VCARQIDAVLKTQGAAAFEGAVIAY----EP---VWA---IGTGKSATPAQAQAVHKFIRDHIAK 196 (255)
T ss_dssp HHHHHHHHHHHHHCGGGGTTCEEEE----CC---GGG---SSSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHcCcEEEEE----CC---HHH---hCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 333333333 234432 2233 23 111 2222457888899999999999876
No 332
>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*
Probab=31.06 E-value=1.7e+02 Score=28.24 Aligned_cols=121 Identities=7% Similarity=0.030 Sum_probs=79.0
Q ss_pred eeEEEEcCC--CCC--CCCHHHHHHHHHHHHHHcCCCCCcEEEEEe--cCCCCCHHHHHHHHHCCCC---EE-EEccCCC
Q 012112 115 LETVFFGGG--TPS--LVPPRFVSSILDTLTDKFGLSLDAEISMEM--DPGTFDARKMEELMDLGVN---RV-SLGVQAF 184 (471)
Q Consensus 115 v~~i~fGGG--Tps--~l~~~~l~~ll~~l~~~~~l~~~~eitiE~--~P~~l~~e~l~~l~~~Gvn---rv-siGvQS~ 184 (471)
.+-|-+||- .|. -.+++...++++.+++..+ ..++|.. || +.+.+.++.-.++|.. -| |+.-+.
T Consensus 95 AdiIDIg~eStrP~~~~vs~ee~~~~V~~v~~~~~----vPlsIDg~~~~-T~~~eV~eaAleagag~~~lINsv~~~~- 168 (323)
T 4djd_D 95 ADLIYLKLDGADPEGANHSVDQCVATVKEVLQAVG----VPLVVVGCGDV-EKDHEVLEAVAEAAAGENLLLGNAEQEN- 168 (323)
T ss_dssp CSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHCC----SCEEEECCSCH-HHHHHHHHHHHHHTTTSCCEEEEEBTTB-
T ss_pred CCEEEEcCccCCCCCCCCCHHHHHHHHHHHHhhCC----ceEEEECCCCC-CCCHHHHHHHHHhcCCCCCeEEECCccc-
Confidence 567778742 243 2466778888888887643 4577772 32 4466777777776633 12 332233
Q ss_pred CHHHHHHcCC---------CCCHHHHHHHHHHHHHcCC--CeeEeeeecCCCCCCHHHHHHHHHHHHh
Q 012112 185 QDELLKSCGR---------AHGLKEVYEAIEIVKLCGV--ENWSLDLISSLPHQTPQMWEESLRRTVG 241 (471)
Q Consensus 185 ~d~~L~~l~R---------~~t~~~~~~ai~~~~~~G~--~~v~~DlI~GlPgqT~e~~~~~l~~~~~ 241 (471)
.++++....+ ..+.+-..+.++.+.++|+ ++|-+|-.+|--|-+.+.-.++++.+..
T Consensus 169 ~~~m~~laa~~g~~vVlmh~~d~~~~~~l~~~a~~~GI~~e~IIlDPg~g~fgk~~e~~l~~l~~ir~ 236 (323)
T 4djd_D 169 YKSLTAACMVHKHNIIARSPLDINICKQLNILINEMNLPLDHIVIDPSIGGLGYGIEYSFSIMERIRL 236 (323)
T ss_dssp CHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHTTTCCGGGEEEECCCCCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCeEEEEccchHHHHHHHHHHHHHcCCCHHHEEEeCCCccccCCHHHHHHHHHHHHH
Confidence 2566554322 1245667778889999999 7799999999568888888888877764
No 333
>1gve_A Aflatoxin B1 aldehyde reductase member 3; oxidoreductase, aldo-keto reductase, succinic semialdehyde oxidoreductase, AKR7 family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2clp_A* 2c91_A*
Probab=30.99 E-value=3.1e+02 Score=25.85 Aligned_cols=60 Identities=20% Similarity=0.196 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHH-HhCCCCcEEEEecccc-CCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc-eecccccc
Q 012112 226 HQTPQMWEESLRRT-VGAQPKHVSVYDLQVE-QGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR-HYEISSYG 302 (471)
Q Consensus 226 gqT~e~~~~~l~~~-~~l~p~his~y~l~~~-pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~-~yeis~fa 302 (471)
..+.+.+++.++.- .+|+.|+|-+|.+.-. +.++ . .+.+. +.+.|.+.|.. .+.+|||.
T Consensus 81 ~~~~~~i~~~~~~SL~rL~~dyiDl~~lH~p~~~~~--------------~---~e~~~-al~~l~~~Gkir~iGvSn~~ 142 (327)
T 1gve_A 81 TLKPADVRFQLETSLKRLQCPRVDLFYLHFPDHGTP--------------I---EETLQ-ACHQLHQEGKFVELGLSNYV 142 (327)
T ss_dssp CSSHHHHHHHHHHHHHHTTCSCEEEEEECSCCTTSC--------------H---HHHHH-HHHHHHHTTSEEEEEEESCC
T ss_pred CCCHHHHHHHHHHHHHHHCCCeEeEEEecCCCCCCC--------------H---HHHHH-HHHHHHhCCceeEEEecCCC
Confidence 35788888888865 4699999999976421 1111 1 12333 55567777865 45788885
Q ss_pred C
Q 012112 303 E 303 (471)
Q Consensus 303 ~ 303 (471)
.
T Consensus 143 ~ 143 (327)
T 1gve_A 143 S 143 (327)
T ss_dssp H
T ss_pred H
Confidence 3
No 334
>1v84_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 1; glycoprotein, glycocyltransferase, HNK-1 epitop; HET: GAL NDG NAG TLA UDP; 1.82A {Homo sapiens} SCOP: c.68.1.7 PDB: 1v83_A* 1v82_A*
Probab=30.90 E-value=2e+02 Score=26.85 Aligned_cols=90 Identities=17% Similarity=0.111 Sum_probs=59.8
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHH------
Q 012112 117 TVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLK------ 190 (471)
Q Consensus 117 ~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~------ 190 (471)
.||+- |||.-.+.+..+|.+.....-...+-.-|-+|..+ ..+.+.-+.|++.|+....+++.+ ++-.+
T Consensus 4 ~I~vV--TPTy~R~~Q~a~LtRLa~TL~~Vp~L~WIVVEd~~-~~t~~va~lL~~sgl~y~HL~~~~--p~~~~~~~~~~ 78 (253)
T 1v84_A 4 TIHVV--TPTYSRPVQKAELTRMANTLLHVPNLHWLVVEDAP-RRTPLTARLLRDTGLNYTHLHVET--PRNYKLRGDAR 78 (253)
T ss_dssp EEEEE--EEECCSTTHHHHHHHHHHHHTTSSSEEEEEEESSS-SCCHHHHHHHHHHCCEEEEEECCC--CHHHHCC----
T ss_pred EEEEE--eCCCCccchhHHHHHHhhhhccCCceEEEEEeCCC-CCCHHHHHHHHHcCCceEEeecCC--Ccccccccccc
Confidence 45554 88887777776665555444334443455566433 468999999999999999999986 22222
Q ss_pred HcCCCCCHHHHHHHHHHHHHc
Q 012112 191 SCGRAHGLKEVYEAIEIVKLC 211 (471)
Q Consensus 191 ~l~R~~t~~~~~~ai~~~~~~ 211 (471)
.-.+.-...+--.|++.+++.
T Consensus 79 ~~~~~rg~~qRn~AL~~Ir~~ 99 (253)
T 1v84_A 79 DPRIPRGTMQRNLALRWLRET 99 (253)
T ss_dssp ---CCTTHHHHHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHHh
Confidence 112334577888899999974
No 335
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=30.82 E-value=2.4e+02 Score=26.65 Aligned_cols=30 Identities=7% Similarity=-0.042 Sum_probs=15.0
Q ss_pred eecCCCCCCHHHHHHHHHHHHhCCCCcEEE
Q 012112 220 LISSLPHQTPQMWEESLRRTVGAQPKHVSV 249 (471)
Q Consensus 220 lI~GlPgqT~e~~~~~l~~~~~l~p~his~ 249 (471)
+|.|.-+.+.++..+..+.+.++++|-+.+
T Consensus 87 viaGvg~~~t~~ai~la~~a~~~Gadavlv 116 (304)
T 3l21_A 87 VIAGAGTYDTAHSIRLAKACAAEGAHGLLV 116 (304)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 455554445555555555555555554433
No 336
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=30.74 E-value=3.1e+02 Score=25.01 Aligned_cols=81 Identities=15% Similarity=0.156 Sum_probs=60.5
Q ss_pred EEecCCC-CCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHH
Q 012112 154 MEMDPGT-FDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMW 232 (471)
Q Consensus 154 iE~~P~~-l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~ 232 (471)
.-..|+. .+.+.++.+.++|.+-|-+|+ | .+.+.+++.+.++.+|+.. +-+-||.+.+.+=
T Consensus 13 t~gDP~~~~t~~~~~~l~~~GaD~IelG~-S----------~g~t~~~~~~~v~~ir~~~---~Pivl~~y~~n~i---- 74 (234)
T 2f6u_A 13 TKLDPDRTNTDEIIKAVADSGTDAVMISG-T----------QNVTYEKARTLIEKVSQYG---LPIVVEPSDPSNV---- 74 (234)
T ss_dssp EEECTTSCCCHHHHHHHHTTTCSEEEECC-C----------TTCCHHHHHHHHHHHTTSC---CCEEECCSSCCCC----
T ss_pred EeeCCCccccHHHHHHHHHcCCCEEEECC-C----------CCCCHHHHHHHHHHhcCCC---CCEEEecCCcchh----
Confidence 3457875 688999999999999999999 2 5678999999999998843 4455666654221
Q ss_pred HHHHHHHHhCCCCcEEEEeccccCCChh
Q 012112 233 EESLRRTVGAQPKHVSVYDLQVEQGTKF 260 (471)
Q Consensus 233 ~~~l~~~~~l~p~his~y~l~~~pgT~l 260 (471)
+.++|.+-+=.|..++...+
T Consensus 75 --------~~gvDg~iipdLp~ee~~~~ 94 (234)
T 2f6u_A 75 --------VYDVDYLFVPTVLNSADGDW 94 (234)
T ss_dssp --------CCCSSEEEEEEETTBSBGGG
T ss_pred --------hcCCCEEEEcccCCCCCHHH
Confidence 66888887777777665544
No 337
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*
Probab=30.67 E-value=96 Score=29.89 Aligned_cols=23 Identities=13% Similarity=0.335 Sum_probs=15.0
Q ss_pred HHHHHHHHCCCCEEEEccCCCCH
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQD 186 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d 186 (471)
+..+.|.+.|.+-|-||.||..+
T Consensus 37 ~~a~~~v~~GAdIIDIGgeSTrP 59 (314)
T 2vef_A 37 QQARKLIAEGASMLDIGGESTRP 59 (314)
T ss_dssp HHHHHHHHTTCSEEEEECCC---
T ss_pred HHHHHHHHCCCCEEEECCCcCCC
Confidence 34566777788888888888654
No 338
>1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3 PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A* 3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A*
Probab=30.61 E-value=2.4e+02 Score=27.48 Aligned_cols=117 Identities=7% Similarity=0.006 Sum_probs=65.1
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCC----HHHHHHHHHHHHHcCCCeeEeeeec-----------CCCCC
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHG----LKEVYEAIEIVKLCGVENWSLDLIS-----------SLPHQ 227 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t----~~~~~~ai~~~~~~G~~~v~~DlI~-----------GlPgq 227 (471)
.+.++.++++|++.|.+. +.- ......+ .+++.+..+.+++.|+.-.++..-+ .-|..
T Consensus 36 ~e~l~~aa~~G~~~VEl~-----~~~--l~p~~~~~~~~~~~~~~l~~~l~~~GL~i~~~~~~~f~~p~~~~g~l~spd~ 108 (393)
T 1xim_A 36 VEAVHKLAEIGAYGITFH-----DDD--LVPFGSDAQTRDGIIAGFKKALDETGLIVPMVTTNLFTHPVFKDGGFTSNDR 108 (393)
T ss_dssp HHHHHHHHHHTCSEEECB-----HHH--HSCTTCCHHHHHHHHHHHHHHHHHHTCBCCEEECCCSSSGGGTTCSTTCSSH
T ss_pred HHHHHHHHHhCCCEEEee-----ccc--CCCccccccccHHHHHHHHHHHHHhCCEEEEEecCCcCCcccccCCCCCCCH
Confidence 688899999999998885 111 1111112 4566666778888898733443311 11221
Q ss_pred -----CHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCC-CCCHHHHHHHHHHHHHHHHHCCC
Q 012112 228 -----TPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFP-LPTETQSANFYRMASSMLSSAGY 293 (471)
Q Consensus 228 -----T~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~-~p~~~~~~~~~~~~~~~L~~~Gy 293 (471)
..+.+++.++.+.+++.+.|.+.. |..-+... +... ....+...+.+..+.+..++.||
T Consensus 109 ~~r~~~i~~~~~~i~~A~~LGa~~vv~~~-----G~~g~~~~--~~~~~~~~~~~~~e~L~~l~~~A~~~g~ 173 (393)
T 1xim_A 109 SVRRYAIRKVLRQMDLGAELGAKTLVLWG-----GREGAEYD--SAKDVSAALDRYREALNLLAQYSEDRGY 173 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCEEEEEC-----TTSEESSG--GGCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEECC-----CCCCCcCC--ccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 135778888888999999886653 21100000 0000 00113445666777777777743
No 339
>2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET: SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A* 2osw_A* 2oyl_A* 2oym_A* 2osy_A*
Probab=30.60 E-value=1.6e+02 Score=29.76 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=38.2
Q ss_pred CCCHHHH-HHHHHCCCCEEEEccCCCCHHHHH-HcCCCCC---HHHHHHHHHHHHHcCCCeeEeeee
Q 012112 160 TFDARKM-EELMDLGVNRVSLGVQAFQDELLK-SCGRAHG---LKEVYEAIEIVKLCGVENWSLDLI 221 (471)
Q Consensus 160 ~l~~e~l-~~l~~~GvnrvsiGvQS~~d~~L~-~l~R~~t---~~~~~~ai~~~~~~G~~~v~~DlI 221 (471)
..+++.+ +.|++.|+|-|-+.+. -..+. .-+ ..+ .+.+.+.++.+++.|+. |-+|+-
T Consensus 65 ~~~~~di~~~l~~~G~N~VRl~v~---w~~~~p~~g-~~~~~~l~~l~~~v~~a~~~Gi~-vildlH 126 (481)
T 2osx_A 65 QFTEADLAREYADMGTNFVRFLIS---WRSVEPAPG-VYDQQYLDRVEDRVGWYAERGYK-VMLDMH 126 (481)
T ss_dssp SCCHHHHHHHHHHHCCCEEEEEEC---HHHHCSBTT-BCCHHHHHHHHHHHHHHHHTTCE-EEEEEC
T ss_pred cccHHHHHHHHHHCCCCEEEEeCc---HHHcCCCCC-CcCHHHHHHHHHHHHHHHHCCCE-EEEEcc
Confidence 4678888 9999999997777652 01110 001 112 35667789999999997 888865
No 340
>3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A*
Probab=30.46 E-value=32 Score=38.03 Aligned_cols=62 Identities=16% Similarity=0.246 Sum_probs=43.8
Q ss_pred HHHHHHHHHCCCCEEEEccC--CCCH--------------HHHHHcC-----CCCCHHHHHHHHHHHHHcCCCeeEeeee
Q 012112 163 ARKMEELMDLGVNRVSLGVQ--AFQD--------------ELLKSCG-----RAHGLKEVYEAIEIVKLCGVENWSLDLI 221 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQ--S~~d--------------~~L~~l~-----R~~t~~~~~~ai~~~~~~G~~~v~~DlI 221 (471)
.++|..|+++||+.|-|-.- +-.+ .-...++ |--+.+++.+.|+.++++|+. |-+|++
T Consensus 636 ~~~l~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~GY~~~d~~~i~es~~~~~Gt~~df~~lv~~~H~~GI~-VilD~V 714 (844)
T 3aie_A 636 AKNVDKFAEWGVTDFEMAPQYVSSTDGSFLDSVIQNGYAFTDRYDLGISKPNKYGTADDLVKAIKALHSKGIK-VMADWV 714 (844)
T ss_dssp HHTHHHHHHTTCCEEECCCCSCBCCCCSSGGGTTTCSSSBSCTTCSSCSSCBTTBCHHHHHHHHHHHHHTTCE-EEEEEC
T ss_pred HHHHHHHHHCCCCeEEECCcccCCCCCccccccCCCCCccccCccCCCCCCCCCCCHHHHHHHHHHHHHCCCE-EEEEEc
Confidence 36788888899998877533 1111 0112232 344799999999999999998 999999
Q ss_pred cCCC
Q 012112 222 SSLP 225 (471)
Q Consensus 222 ~GlP 225 (471)
++.=
T Consensus 715 ~NH~ 718 (844)
T 3aie_A 715 PDQM 718 (844)
T ss_dssp CSEE
T ss_pred cCcc
Confidence 8764
No 341
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=30.45 E-value=61 Score=32.58 Aligned_cols=30 Identities=10% Similarity=0.130 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeeEeeeecCCCC
Q 012112 196 HGLKEVYEAIEIVKLCGVENWSLDLISSLPH 226 (471)
Q Consensus 196 ~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg 226 (471)
-+.+++.+.++.|++.|++ |-+|+++..-+
T Consensus 62 Gt~~dfk~Lv~~aH~~Gi~-VilD~V~NH~~ 91 (448)
T 1g94_A 62 GNRAQFIDMVNRCSAAGVD-IYVDTLINHMA 91 (448)
T ss_dssp BCHHHHHHHHHHHHHTTCE-EEEEEECSEEC
T ss_pred CCHHHHHHHHHHHHHCCCE-EEEEEeecccc
Confidence 3799999999999999998 99999998543
No 342
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=30.42 E-value=2.3e+02 Score=27.07 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHcCCC
Q 012112 199 KEVYEAIEIVKLCGVE 214 (471)
Q Consensus 199 ~~~~~ai~~~~~~G~~ 214 (471)
++..+..+.+.++|.+
T Consensus 106 ~~ai~la~~A~~~Gad 121 (315)
T 3na8_A 106 AKTVRRAQFAESLGAE 121 (315)
T ss_dssp HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhcCCC
Confidence 3444444444444544
No 343
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=30.31 E-value=1e+02 Score=24.64 Aligned_cols=43 Identities=7% Similarity=0.074 Sum_probs=32.4
Q ss_pred HHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEec
Q 012112 375 LMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLD 419 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~ 419 (471)
++..|. ..+....++.+.+|.+.. .+...++.|.+.|++....
T Consensus 26 IL~~L~-~~~~~~~eLa~~lgis~s-tvs~~L~~L~~~GlV~~~~ 68 (118)
T 2jsc_A 26 ILVALL-DGVCYPGQLAAHLGLTRS-NVSNHLSCLRGCGLVVATY 68 (118)
T ss_dssp HHHHHH-TTCCSTTTHHHHHSSCHH-HHHHHHHHHTTTTSEEEEE
T ss_pred HHHHHH-cCCCCHHHHHHHHCcCHH-HHHHHHHHHHHCCceEEEE
Confidence 333344 346888999999998864 4677899999999998653
No 344
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=30.07 E-value=2.1e+02 Score=26.28 Aligned_cols=179 Identities=9% Similarity=0.035 Sum_probs=92.4
Q ss_pred chhHHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCC--CCCCHHHHHHHHHHHHHHcCC--CCCcEEEEEecCCCC--
Q 012112 88 DPRVSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTP--SLVPPRFVSSILDTLTDKFGL--SLDAEISMEMDPGTF-- 161 (471)
Q Consensus 88 ~~~~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTp--s~l~~~~l~~ll~~l~~~~~l--~~~~eitiE~~P~~l-- 161 (471)
...+++.++.+.+-|+...... +..|.+.|+.+ ..-..+.++.+.+.+++.... ..++.+.+|..+..+
T Consensus 100 ~~~r~~~~~~~~~~i~~A~~lG-----~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~~~~~ 174 (295)
T 3cqj_A 100 DAVRAQGLEIMRKAIQFAQDVG-----IRVIQLAGYDVYYQEANNETRRRFRDGLKESVEMASRAQVTLAMEIMDYPLMN 174 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-----CCEEEECCCSCSSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEEEECCSSGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-----CCEEEECCCCCCcCcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEeeCCCcccC
Confidence 3455667777777777654432 34444544432 122344555554444432211 124579999876543
Q ss_pred C-HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEe-eeec----CCC-CCCHHHHHH
Q 012112 162 D-ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSL-DLIS----SLP-HQTPQMWEE 234 (471)
Q Consensus 162 ~-~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~-DlI~----GlP-gqT~e~~~~ 234 (471)
+ ++.++.+.+.|-..+.+=+.+++-.. . +.+.. +.++.+... +..|.+ |.-- .+| |+-.-+|.+
T Consensus 175 ~~~~~~~l~~~v~~~~vg~~~D~~h~~~---~--g~d~~---~~l~~~~~~-i~~vHl~D~~~g~~~~~p~G~G~id~~~ 245 (295)
T 3cqj_A 175 SISKALGYAHYLNNPWFQLYPDIGNLSA---W--DNDVQ---MELQAGIGH-IVAVHVKDTKPGVFKNVPFGEGVVDFER 245 (295)
T ss_dssp SHHHHHHHHHHHCCTTEEEECBHHHHHS---S--SCCHH---HHHHHTGGG-BCCEEECEEETTEEEEECTTSSSCCHHH
T ss_pred CHHHHHHHHHhcCCCCeEEEeccchHhh---c--CCCHH---HHHHHhccc-eEEEEeecCCCCccCCcCCCCCccCHHH
Confidence 3 46667777777677777665543321 1 23332 333333222 333433 2211 244 766668888
Q ss_pred HHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q 012112 235 SLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGY 293 (471)
Q Consensus 235 ~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy 293 (471)
.++.+.+.+.+. .+++|-.++ . .....+...+-+....+.+.++|.
T Consensus 246 ~~~~L~~~gy~g----~i~lE~~~~-~--------~~~~~~~~~~s~~~l~~~~~~~g~ 291 (295)
T 3cqj_A 246 CFETLKQSGYCG----PYLIEMWSE-T--------AEDPAAEVAKARDWVKARMAKAGM 291 (295)
T ss_dssp HHHHHHHTTCCS----CEEECCCGG-G--------SSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCce----eEEEEecCC-C--------CCCHHHHHHHHHHHHHHHHHHhcc
Confidence 888888888763 122221111 0 011234455556677777777775
No 345
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=30.02 E-value=3.1e+02 Score=26.10 Aligned_cols=28 Identities=11% Similarity=0.055 Sum_probs=12.6
Q ss_pred eecCCCCCCHHHHHHHHHHHHhCCCCcE
Q 012112 220 LISSLPHQTPQMWEESLRRTVGAQPKHV 247 (471)
Q Consensus 220 lI~GlPgqT~e~~~~~l~~~~~l~p~hi 247 (471)
+|.|.-+.+.++..+..+.+.+++.|-+
T Consensus 94 ViaGvg~~st~~ai~la~~A~~~Gadav 121 (315)
T 3si9_A 94 VVAGAGSNSTSEAVELAKHAEKAGADAV 121 (315)
T ss_dssp BEEECCCSSHHHHHHHHHHHHHTTCSEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 3444444444444444444444444433
No 346
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=30.01 E-value=17 Score=24.72 Aligned_cols=12 Identities=42% Similarity=1.168 Sum_probs=9.5
Q ss_pred cCCcCCCCCccc
Q 012112 65 KRCHYCDFPIVA 76 (471)
Q Consensus 65 ~~C~yC~f~~~~ 76 (471)
-+|.||+|..+.
T Consensus 24 IrCpyCGyrii~ 35 (48)
T 4ayb_P 24 VRCPYCGYKIIF 35 (48)
T ss_dssp SCCTTTCCSCEE
T ss_pred cccCccCcEEEE
Confidence 479999997664
No 347
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=29.93 E-value=33 Score=32.75 Aligned_cols=54 Identities=15% Similarity=0.334 Sum_probs=40.6
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQ 182 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQ 182 (471)
++.|-+.- ++++.+.+..+.++. .+.+|+. +.++.+.++.+++.|++.||+|-=
T Consensus 219 aD~I~LDn-----~~~~~l~~av~~~~~--------~v~ieaS-GGIt~~~i~~~a~tGVD~IsvGal 272 (287)
T 3tqv_A 219 ADIVMLDN-----FSGEDIDIAVSIARG--------KVALEVS-GNIDRNSIVAIAKTGVDFISVGAI 272 (287)
T ss_dssp CSEEEEES-----CCHHHHHHHHHHHTT--------TCEEEEE-SSCCTTTHHHHHTTTCSEEECSHH
T ss_pred CCEEEEcC-----CCHHHHHHHHHhhcC--------CceEEEE-CCCCHHHHHHHHHcCCCEEEEChh
Confidence 56677742 466888888777652 3556665 468999999999999999999853
No 348
>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR, AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans} SCOP: c.1.7.0
Probab=29.77 E-value=1.7e+02 Score=28.30 Aligned_cols=58 Identities=10% Similarity=0.158 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHH-HhCCCCcEEEEeccc-cCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc-eecccccc
Q 012112 227 QTPQMWEESLRRT-VGAQPKHVSVYDLQV-EQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR-HYEISSYG 302 (471)
Q Consensus 227 qT~e~~~~~l~~~-~~l~p~his~y~l~~-~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~-~yeis~fa 302 (471)
.+.+.+++.++.- .+|+.++|-+|.+.- .+.+ + .+ +.+ .+.+.|.+.|.. .+.+|||.
T Consensus 119 ~~~~~i~~~~e~SL~rLg~dyiDl~~lH~p~~~~-------------~-~~---e~~-~al~~l~~~Gkir~iGvSn~~ 179 (348)
T 3n2t_A 119 SRPARIRKEVEDSLRRLRVETIDLEQIHWPDDKT-------------P-ID---ESA-RELQKLHQDGKIRALGVSNFS 179 (348)
T ss_dssp CCHHHHHHHHHHHHHHHTCSSEEEEEESSCCTTS-------------C-HH---HHH-HHHHHHHHTTSEEEEEEESCC
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEecCCCCCC-------------C-HH---HHH-HHHHHHHHhCcceEEecCCCC
Confidence 5788888888865 458999999998752 1111 1 12 223 345667888876 46789884
No 349
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=29.60 E-value=28 Score=36.39 Aligned_cols=65 Identities=11% Similarity=0.177 Sum_probs=42.4
Q ss_pred HHHHHHHHCCCCEEEEcc--CCCC------HHHHHHcCCC-CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCH
Q 012112 164 RKMEELMDLGVNRVSLGV--QAFQ------DELLKSCGRA-HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTP 229 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGv--QS~~------d~~L~~l~R~-~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~ 229 (471)
++|..|+++||+.|-|.. +|-. ..-...+... -|.+++.+.++.+++.|+. |-+|++++.-+..-
T Consensus 36 ~~Ldyl~~LGv~~I~L~Pi~~~~~~~~GYd~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~-VilD~V~NHts~~~ 109 (557)
T 1zja_A 36 EKLDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMR-LMVDVVINHSSDQH 109 (557)
T ss_dssp HTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHTTCE-EEEEECCSBCCTTS
T ss_pred HHHHHHHHcCCCEEEECCCccCCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCE-EEEEEeccccccch
Confidence 456666677777665541 1111 1011123332 3789999999999999998 99999998766543
No 350
>3ahx_A Beta-glucosidase A; cellulases, glycosyl hydrolase, manganese enhancement, hydro; HET: 7PE; 1.90A {Clostridium cellulovorans}
Probab=29.60 E-value=49 Score=33.76 Aligned_cols=92 Identities=13% Similarity=0.179 Sum_probs=58.0
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCC-CC---HHHHHHHHHHHHHcCCCeeEeee-ecCCCC-----------
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRA-HG---LKEVYEAIEIVKLCGVENWSLDL-ISSLPH----------- 226 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~-~t---~~~~~~ai~~~~~~G~~~v~~Dl-I~GlPg----------- 226 (471)
++.++.|+++|++.+.+++ |- .++.-. |++ .+ .+-..+.++.+++.|++ +-++| =+++|-
T Consensus 62 ~eDi~lm~~~G~~~~R~si-~W-sri~P~-G~g~~n~~G~~~y~~lid~l~~~GI~-p~vtL~h~d~P~~l~~~ggw~~r 137 (453)
T 3ahx_A 62 KEDVQLLKSLGIKSYRFSI-AW-PRIFPK-GFGEINQKGIQFYRDLIDELIKNDIE-PAITIYHWDLPQKLQDIGGWANP 137 (453)
T ss_dssp HHHHHHHHHTTCCEEEEEC-CH-HHHCTT-SSSSCCHHHHHHHHHHHHHHHHTTCE-EEEEEESSCCBHHHHTTTGGGSH
T ss_pred HHHHHHHHHhCCCeEeccc-CH-HHhccC-CCCCcCHHHHHHHHHHHHHHHHCCCE-EEEEecCCCccHhHhhCCCCCCc
Confidence 6889999999999888887 32 223222 222 34 66678899999999997 66666 356663
Q ss_pred CCHHHHHHHHHHHHhCCCCcEEEEeccccCCC
Q 012112 227 QTPQMWEESLRRTVGAQPKHVSVYDLQVEQGT 258 (471)
Q Consensus 227 qT~e~~~~~l~~~~~l~p~his~y~l~~~pgT 258 (471)
++.+.+.+-.+.+.+.=-++|..+...-||+.
T Consensus 138 ~~~~~f~~ya~~~~~~~gd~V~~W~t~NEp~~ 169 (453)
T 3ahx_A 138 QVADYYVDYANLLFREFGDRVKTWITHNEPWV 169 (453)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCEEEEEECHHH
T ss_pred hHHHHHHHHHHHHHHHhCCccceEEEccCcch
Confidence 13444555555444422245666655556654
No 351
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=29.52 E-value=54 Score=31.45 Aligned_cols=55 Identities=15% Similarity=0.353 Sum_probs=41.7
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQA 183 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS 183 (471)
++.|-+.- ++++.+.+.++.+. ..+.+|+. +.++.+.++.+.+.|++.||+|--+
T Consensus 230 aD~I~LDn-----~~~~~l~~av~~i~--------~~v~ieaS-GGI~~~~i~~~a~tGVD~isvG~lt 284 (298)
T 3gnn_A 230 ARSVLLDN-----FTLDMMRDAVRVTE--------GRAVLEVS-GGVNFDTVRAIAETGVDRISIGALT 284 (298)
T ss_dssp CEEEEEES-----CCHHHHHHHHHHHT--------TSEEEEEE-SSCSTTTHHHHHHTTCSEEECGGGG
T ss_pred CCEEEECC-----CCHHHHHHHHHHhC--------CCCeEEEE-cCCCHHHHHHHHHcCCCEEEECCee
Confidence 67777753 35677777776652 24677776 4689999999999999999999754
No 352
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Probab=29.46 E-value=27 Score=37.57 Aligned_cols=28 Identities=7% Similarity=0.113 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeeEeeeecCC
Q 012112 196 HGLKEVYEAIEIVKLCGVENWSLDLISSL 224 (471)
Q Consensus 196 ~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl 224 (471)
-|.+++.+.++.|++.|++ |-+|+++..
T Consensus 105 Gt~~df~~Lv~~aH~~Gik-VilD~V~NH 132 (686)
T 1qho_A 105 GNWTTFDTLVNDAHQNGIK-VIVDFVPNH 132 (686)
T ss_dssp CCHHHHHHHHHHHHHTTCE-EEEEECTTE
T ss_pred CCHHHHHHHHHHHHHCCCE-EEEEecccc
Confidence 4899999999999999998 999999974
No 353
>4acy_A Endo-alpha-mannosidase; hydrolase, endomannosidase, glycoside hydrolase, CAZY, enzyme-carbohydrate interaction, mannose; HET: MSE; 1.69A {Bacteroides thetaiotaomicron} PDB: 4acz_A 4ad0_A* 4acz_B
Probab=29.38 E-value=84 Score=31.23 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=48.6
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHh
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVG 241 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~ 241 (471)
+..++.++++|++-+.+-.=.. +. .+.+.+..+++.|.+.|++ +.+|+ -+..+.+.+.+.+++..+++
T Consensus 106 ~~hi~~ak~aGIDgfal~w~~~--------~~-~~d~~l~~~~~aA~~~g~k-~~f~~-~~y~~~~~~~~~~dv~~li~ 173 (382)
T 4acy_A 106 RKHIRMHIKANVGVLSVTWWGE--------SD-YGNQSVSLLLDEAAKVGAK-VCFHI-EPFNGRSPQTVRENIQYIVD 173 (382)
T ss_dssp HHHHHHHHHHTEEEEEEEECGG--------GG-TTCHHHHHHHHHHHHHTCE-EEEEE-CCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEecCC--------CC-chHHHHHHHHHHHHHcCCE-EEEEe-ecCCCCChHHHHHHHHHHHH
Confidence 4788999999999776654211 11 2234566777888889997 77664 46778888888888887765
No 354
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=29.27 E-value=1.4e+02 Score=24.36 Aligned_cols=46 Identities=9% Similarity=0.160 Sum_probs=33.8
Q ss_pred HHHHHhccc-cCCCCHhhHHHHhCC----ChHHHHHHHHHHHHHCCCEEEec
Q 012112 373 DVLMLSFRT-ARGVDLKSFGETFGC----SLVHTLCKAYKPYIESGHVICLD 419 (471)
Q Consensus 373 e~~~~~Lr~-~~gi~~~~~~~~fg~----~~~~~~~~~~~~~~~~gll~~~~ 419 (471)
..+|.-|.. ..++...++.++++. +. ..+...++.|++.|||....
T Consensus 12 ~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~-~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 12 RAVMDHLWSRTEPQTVRQVHEALSARRDLAY-TTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHHTCSSCEEHHHHHHHHTTTCCCCH-HHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHhccCCCCH-HHHHHHHHHHHHCCCEEEEe
Confidence 344555554 468999999999873 43 35677899999999998764
No 355
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=29.23 E-value=72 Score=27.15 Aligned_cols=49 Identities=14% Similarity=-0.024 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHHHHHH
Q 012112 401 TLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNELISHA 465 (471)
Q Consensus 401 ~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i~~~~ 465 (471)
.+-+.|.+|+++|||...... .+..+.+.-+++|| ++|+........++
T Consensus 80 tLYp~L~rLE~~GlI~~~~~~---------------~~~~g~~rk~Y~LT-~~Gr~~l~~~~~~~ 128 (148)
T 2zfw_A 80 VLYTALKFLEDEQIISGYWKK---------------VEGRGRPRRMYQLA-QANDDRSRDLAQLW 128 (148)
T ss_dssp HHHHHHHHHHHTSSEEEECCC---------------CTTSSCCCCEEEES-SSSCSTTHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEeec---------------cCCCCCCcEEEEEC-HHHHHHHHHHHHHH
Confidence 456889999999999864311 00001222368997 99999888776554
No 356
>4exb_A Putative uncharacterized protein; aldo-keto reductase, NADP+ binding, oxidoreducta; 2.75A {Pseudomonas aeruginosa} PDB: 4exa_A
Probab=29.10 E-value=2.8e+02 Score=25.98 Aligned_cols=64 Identities=13% Similarity=0.195 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHH-HhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc-eeccccccC
Q 012112 226 HQTPQMWEESLRRT-VGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR-HYEISSYGE 303 (471)
Q Consensus 226 gqT~e~~~~~l~~~-~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~-~yeis~fa~ 303 (471)
..+.+.+++.++.. .+|+.++|-+|.+-- |+... ......+.+ .+.+.|.+.|.. .+.+|||..
T Consensus 129 ~~~~~~i~~~~e~SL~rLg~dyiDl~llH~-p~~d~------------~~~~~~e~~-~al~~l~~~Gkir~iGvSn~~~ 194 (292)
T 4exb_A 129 DFSAAHTRRSVERSLKRLETDRIELVLVHS-DGNDL------------DILENSEVY-PTLAALKREGLIGAYGLSGKTV 194 (292)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSCEEEEEEEC-CSCHH------------HHHHHSSHH-HHHHHHHHTTSEEEEEEECSSH
T ss_pred CCCHHHHHHHHHHHHHHhCCCceeEEEEec-CCCCc------------cccchHHHH-HHHHHHHHCCCceEEEeCCCCH
Confidence 35788888888865 468999999998642 21100 000111233 355667788876 568899854
No 357
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=28.85 E-value=66 Score=32.27 Aligned_cols=55 Identities=4% Similarity=-0.069 Sum_probs=36.7
Q ss_pred CCCCC-CCHHHHHHHHHHHHHHcCCCCCcEEEEE--ecCCCCCHHHHHHHHHCCCCEEEEccCCCCH
Q 012112 123 GTPSL-VPPRFVSSILDTLTDKFGLSLDAEISME--MDPGTFDARKMEELMDLGVNRVSLGVQAFQD 186 (471)
Q Consensus 123 GTps~-l~~~~l~~ll~~l~~~~~l~~~~eitiE--~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d 186 (471)
|||.+ ++.+.+.+=++.+++.++ +..+..- +|+ +...++.+.+.|+ .+.+-|..+
T Consensus 37 ~tP~~v~dl~~l~~n~~~~~~~~~---~~~i~yavKAn~---~~~v~~~l~~~G~---g~dvaS~~E 94 (424)
T 7odc_A 37 KDAFYVADLGDILKKHLRWLKALP---RVTPFYAVKCND---SRAIVSTLAAIGT---GFDCASKTE 94 (424)
T ss_dssp CCCEEEEEHHHHHHHHHHHHHHCT---TEEEEEEGGGCC---CHHHHHHHHHHTC---EEEECSHHH
T ss_pred CCcEEEeeHHHHHHHHHHHHHhCC---CCeEEEEeccCC---cHHHHHHHHHcCC---cEEECCHHH
Confidence 56633 477788888888888774 3344333 355 6899999999995 455555433
No 358
>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP}
Probab=28.81 E-value=33 Score=35.77 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=43.5
Q ss_pred HHHHHHHHCCCCEEEEcc--CCCC------HHHHHHcCCC-CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHH
Q 012112 164 RKMEELMDLGVNRVSLGV--QAFQ------DELLKSCGRA-HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWE 233 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGv--QS~~------d~~L~~l~R~-~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~ 233 (471)
++|..|+++||+.|-|.. +|-. ..-...+... .+.+++.+.++.+++.|+. |-+|+++..-+..-.-+.
T Consensus 35 ~~ldyl~~lGv~~i~l~Pi~~~~~~~~gY~~~dy~~id~~~Gt~~d~~~lv~~~h~~Gi~-vilD~V~NH~~~~~~~f~ 112 (555)
T 2ze0_A 35 EKLDYLVELGVDIVWICPIYRSPNADNGYDISDYYAIMDEFGTMDDFDELLAQAHRRGLK-VILDLVINHTSDEHPWFI 112 (555)
T ss_dssp HTHHHHHHHTCCEEEECCCEECCCTTTTCSCSEEEEECGGGCCHHHHHHHHHHHHHTTCE-EEEEEECSBCCTTSHHHH
T ss_pred HHHHHHHHcCCCEEEeCCcccCCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCE-EEEEEecccccchhhHHH
Confidence 556666677777665531 1111 0000112222 3789999999999999998 999999998765443333
No 359
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=28.78 E-value=1.3e+02 Score=34.64 Aligned_cols=79 Identities=18% Similarity=0.287 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec--CCCCCHHHHHHH
Q 012112 92 SNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMD--PGTFDARKMEEL 169 (471)
Q Consensus 92 ~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~--P~~l~~e~l~~l 169 (471)
..|+-.+.+++... +++.|.+.+ |-.++.|..+.+++..+++.++ ..+.+-++ .+.-....+.++
T Consensus 708 ~~~~~~~~~~~~~~--------Ga~~i~l~D-T~G~~~P~~~~~lv~~l~~~~~----~~i~~H~Hnd~GlAvAn~laAv 774 (1165)
T 2qf7_A 708 LKYYTNLAVELEKA--------GAHIIAVKD-MAGLLKPAAAKVLFKALREATG----LPIHFHTHDTSGIAAATVLAAV 774 (1165)
T ss_dssp HHHHHHHHHHHHHT--------TCSEEEEEE-TTCCCCHHHHHHHHHHHHHHCS----SCEEEEECBTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--------CCCEEEEeC-ccCCcCHHHHHHHHHHHHHhcC----CeEEEEECCCCCHHHHHHHHHH
Confidence 45666666776543 156788864 8888999999999999999873 45666663 333355666665
Q ss_pred HHCCCCEEEEccCCC
Q 012112 170 MDLGVNRVSLGVQAF 184 (471)
Q Consensus 170 ~~~GvnrvsiGvQS~ 184 (471)
++|+++|.-.+-.+
T Consensus 775 -~aGa~~vd~ti~Gl 788 (1165)
T 2qf7_A 775 -EAGVDAVDAAMDAL 788 (1165)
T ss_dssp -HTTCSEEEEBCGGG
T ss_pred -HhCCCEEEeccccc
Confidence 68999998777654
No 360
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Probab=28.77 E-value=32 Score=36.00 Aligned_cols=70 Identities=9% Similarity=0.143 Sum_probs=44.4
Q ss_pred HHHHHHHHCCCCEEEEcc--CCCC------HHHHHHcCC-CCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHH
Q 012112 164 RKMEELMDLGVNRVSLGV--QAFQ------DELLKSCGR-AHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEE 234 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGv--QS~~------d~~L~~l~R-~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~ 234 (471)
++|..|+++||+.|-|.. +|-. ..-...+.. --|.+++.+.|+.+++.|+. |-+|++++.-+..-.-+.+
T Consensus 49 ~~LdyL~~LGv~~I~l~Pi~~~~~~~~GYd~~dy~~idp~~Gt~~df~~lv~~aH~~Gi~-VilD~V~NH~s~~~~wf~~ 127 (570)
T 1m53_A 49 EKLDYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRNMR-LMIDVVINHTSDQHPWFIQ 127 (570)
T ss_dssp HTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHTTCE-EEEEECCSBCCTTSHHHHH
T ss_pred HHHHHHHHcCCCEEEECCcccCCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCE-EEEEEeccccccccHHHHH
Confidence 556667777777765541 1111 101111222 23789999999999999998 9999999986654433333
No 361
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=28.69 E-value=28 Score=29.05 Aligned_cols=126 Identities=13% Similarity=0.095 Sum_probs=68.2
Q ss_pred EEEEEe--cCCCCCHHHHHHHHHCCCCEEEEccC-CCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeec-CCCC
Q 012112 151 EISMEM--DPGTFDARKMEELMDLGVNRVSLGVQ-AFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLIS-SLPH 226 (471)
Q Consensus 151 eitiE~--~P~~l~~e~l~~l~~~GvnrvsiGvQ-S~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~-GlPg 226 (471)
.+++.. .|+.+ .+....|.+.|+|=-++.+- +-+..+++.. ..+..++.+.+++.|+.....+++- |+|+
T Consensus 8 ~i~v~v~d~~G~l-~~i~~~la~~~inI~~i~~~~~~~~~~~~~~-----~~d~~~a~~~L~~~G~~v~~~svv~v~~~d 81 (144)
T 2f06_A 8 QLSIFLENKSGRL-TEVTEVLAKENINLSALCIAENADFGILRGI-----VSDPDKAYKALKDNHFAVNITDVVGISCPN 81 (144)
T ss_dssp EEEEEECSSSSHH-HHHHHHHHHTTCCEEEEEEEECSSCEEEEEE-----ESCHHHHHHHHHHTTCCEEEEEEEEEEEES
T ss_pred EEEEEecCCCcHH-HHHHHHHHHCCCCEEEEEEEecCCCCEEEEE-----eCCHHHHHHHHHHcCCeEeeeeEEEEEeCC
Confidence 345443 45544 67888899999885555432 2111122222 2244555666677898743343333 5654
Q ss_pred CCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCceec
Q 012112 227 QTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYRHYE 297 (471)
Q Consensus 227 qT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye 297 (471)
+ +-.+.+-++.+.+.++.-...|.+. .+++..-- ++ . +--+.+.+.|.++||..+.
T Consensus 82 ~-pGvla~i~~~L~~~~InI~~~~~~~-~~~~~~~~-i~-----~-------~d~~~A~~~L~~~g~~v~~ 137 (144)
T 2f06_A 82 V-PGALAKVLGFLSAEGVFIEYMYSFA-NNNVANVV-IR-----P-------SNMDKCIEVLKEKKVDLLA 137 (144)
T ss_dssp S-TTHHHHHHHHHHHTTCCEEEEEEEE-ETTEEEEE-EE-----E-------SCHHHHHHHHHHTTCEEEC
T ss_pred C-CcHHHHHHHHHHHCCCCEEEEEEEc-cCCcEEEE-EE-----e-------CCHHHHHHHHHHcCCEEec
Confidence 3 4456666677777776643556542 22221111 11 1 1245577889999998764
No 362
>1vpq_A Hypothetical protein TM1631; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.1.32.1
Probab=28.64 E-value=1.2e+02 Score=28.62 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=42.3
Q ss_pred eeEEEEcCCCCCC-CCHHHHHHHHHHHHHHcCCCCCcEEEEEe-cCCCCCHHHHHHHHHCCCCEEEEc
Q 012112 115 LETVFFGGGTPSL-VPPRFVSSILDTLTDKFGLSLDAEISMEM-DPGTFDARKMEELMDLGVNRVSLG 180 (471)
Q Consensus 115 v~~i~fGGGTps~-l~~~~l~~ll~~l~~~~~l~~~~eitiE~-~P~~l~~e~l~~l~~~GvnrvsiG 180 (471)
+..+.|.= -|++ .+++.++. ++.+.+.+ +..+.+|. +|.-.+++.++.|++.|+..|..-
T Consensus 120 LG~vL~Q~-Ppsf~~~~~~~~~-L~~l~~~l----~~~~AvE~Rh~sW~~~~~~~lL~~~~v~~V~~D 181 (273)
T 1vpq_A 120 LKMTLAQF-PFSFKFSRKNVEY-LEKLRESY----PYELAVEFRHYSWDREETYEFLRNHGITFVVVD 181 (273)
T ss_dssp EEEEEEEC-CTTCCCCHHHHHH-HHHHHHHC----CSCEEEECCBGGGCSHHHHHHHHHHTCEEEEEE
T ss_pred EEEEEEEc-CCCCCCCHHHHHH-HHHHHHHc----CCCEEEEccCchhccHHHHHHHHHcCcEEEEeC
Confidence 56666651 2333 24577777 66665554 34799999 677789999999999999988644
No 363
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=28.62 E-value=2.7e+02 Score=26.21 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHCCCce
Q 012112 275 TQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 275 ~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
++..+.+....+.+.++|...
T Consensus 159 ~ev~~~l~~~i~~a~~~Gi~~ 179 (282)
T 1aj0_A 159 AEVNRYFIEQIARCEQAGIAK 179 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHHHHHcCCCh
Confidence 344666777788888999874
No 364
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=28.33 E-value=2.2e+02 Score=22.80 Aligned_cols=43 Identities=9% Similarity=0.094 Sum_probs=33.0
Q ss_pred HHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEec
Q 012112 375 LMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLD 419 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~ 419 (471)
++..|. ..+....++.+.+|.+-. .+...++.|.+.|++....
T Consensus 51 IL~~L~-~~~~s~~ela~~lgis~s-tvs~~L~~Le~~Glv~~~~ 93 (122)
T 1r1t_A 51 LLSLLA-RSELCVGDLAQAIGVSES-AVSHQLRSLRNLRLVSYRK 93 (122)
T ss_dssp HHHHHT-TCCBCHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHH-cCCCCHHHHHHHHCcCHH-HHHHHHHHHHHCCCeEEEE
Confidence 344444 356899999999999864 5678899999999998643
No 365
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1
Probab=28.23 E-value=22 Score=38.19 Aligned_cols=28 Identities=11% Similarity=0.219 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeeEeeeecCC
Q 012112 196 HGLKEVYEAIEIVKLCGVENWSLDLISSL 224 (471)
Q Consensus 196 ~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl 224 (471)
-+.+++.+.++.|++.|++ |-+|+++..
T Consensus 109 Gt~~df~~Lv~~aH~~GIk-VilD~V~NH 136 (680)
T 1cyg_A 109 GTLSDFQRLVDAAHAKGIK-VIIDFAPNH 136 (680)
T ss_dssp CCHHHHHHHHHHHHHTTCE-EEEEECTTE
T ss_pred CCHHHHHHHHHHHHHCCCE-EEEEeCCCC
Confidence 3799999999999999998 999999875
No 366
>2e9l_A Cytosolic beta-glucosidase; novel cytosolic neutral beta-glycosylceramidase, hydrolase; HET: BGC PLM OLA; 1.60A {Homo sapiens} PDB: 2e9m_A* 2zox_A* 2jfe_X*
Probab=28.23 E-value=49 Score=33.94 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=58.2
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC-CCCH---HHHHHHHHHHHHcCCCeeEeee-ecCCCC-----------
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGR-AHGL---KEVYEAIEIVKLCGVENWSLDL-ISSLPH----------- 226 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R-~~t~---~~~~~ai~~~~~~G~~~v~~Dl-I~GlPg----------- 226 (471)
+|.+++|+++|++.+.+++ |- .+++-.=.+ ..+. +-..+.++.++++|++ +-+.| =+++|-
T Consensus 60 ~eDi~lm~~~G~~~~R~si-sW-sRi~P~g~~g~~n~~Gl~~y~~lid~l~~~GI~-p~vtL~H~d~P~~l~~~ggw~~r 136 (469)
T 2e9l_A 60 EEDLKCIKQLGLTHYRFSL-SW-SRLLPDGTTGFINQKGIDYYNKIIDDLLKNGVT-PIVTLYHFDLPQTLEDQGGWLSE 136 (469)
T ss_dssp HHHHHHHHHHTCSEEEEEC-CH-HHHSTTSSTTSCCHHHHHHHHHHHHHHHHTTCE-EEEEEESSCCBHHHHHTTGGGST
T ss_pred HHHHHHHHHhCCCeEEccc-cH-hhcccCCCCCCcCHHHHHHHHHHHHHHHHcCCE-EEEEeCCCCCCcchhhcCCCCCc
Confidence 6999999999999888887 43 222221101 2344 5577889999999998 55555 566661
Q ss_pred CCHHHHHHHHHHHHhCCCCcEEEEeccccCCC
Q 012112 227 QTPQMWEESLRRTVGAQPKHVSVYDLQVEQGT 258 (471)
Q Consensus 227 qT~e~~~~~l~~~~~l~p~his~y~l~~~pgT 258 (471)
++.+.+.+-.+.+.+.=-++|..+...-||+.
T Consensus 137 ~~~~~f~~ya~~~~~~~gd~V~~W~t~NEp~~ 168 (469)
T 2e9l_A 137 AIIESFDKYAQFCFSTFGDRVKQWITINEANV 168 (469)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCEEEEESCHHH
T ss_pred hHHHHHHHHHHHHHHHhcCcCCEEEEccCcch
Confidence 24555555555555432355666655555543
No 367
>3ahy_A Beta-glucosidase; cellulases, glycosyl hydrolase, manganese enhancement, hydro; 1.63A {Trichoderma reesei}
Probab=28.22 E-value=55 Score=33.59 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=60.0
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC---CCC---HHHHHHHHHHHHHcCCCeeEeeee-cCCC----------
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGR---AHG---LKEVYEAIEIVKLCGVENWSLDLI-SSLP---------- 225 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R---~~t---~~~~~~ai~~~~~~G~~~v~~DlI-~GlP---------- 225 (471)
+|.+++|+++|++.+.+++ |- .+++-. ++ ..+ .+-..+.++.+++.|++ +-+.|. +++|
T Consensus 65 ~eDi~lm~~lG~~~~R~si-sW-sRi~P~-g~~~g~~n~~G~~~y~~lid~l~~~GI~-p~vtL~H~d~P~~L~~~yggw 140 (473)
T 3ahy_A 65 AEDIALLKSLGAKSYRFSI-SW-SRIIPE-GGRGDAVNQAGIDHYVKFVDDLLDAGIT-PFITLFHWDLPEGLHQRYGGL 140 (473)
T ss_dssp HHHHHHHHHHTCSEEEEEC-CH-HHHSSS-CSTTSCCCHHHHHHHHHHHHHHHHTTCE-EEEEEESSCCBHHHHHHHCGG
T ss_pred HHHHHHHHHhCCCeEEccc-cH-HhhcCC-CCCCCCcCHHHHHHHHHHHHHHHHcCCE-EEEEeCCCcCCHHHHhhcCCC
Confidence 6889999999999888887 32 222221 21 234 56678899999999998 666654 4554
Q ss_pred ---CCCHHHHHHHHHHHHhCCCCcEEEEeccccCCCh
Q 012112 226 ---HQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTK 259 (471)
Q Consensus 226 ---gqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~ 259 (471)
-++.+.+.+-.+.+.+.= ++|..+...-||+..
T Consensus 141 ~~~~~~~~~f~~ya~~~~~~~-drV~~W~t~NEp~~~ 176 (473)
T 3ahy_A 141 LNRTEFPLDFENYARVMFRAL-PKVRNWITFNEPLCS 176 (473)
T ss_dssp GCTTHHHHHHHHHHHHHHHHC-TTCCEEEEEECHHHH
T ss_pred cCchhhHHHHHHHHHHHHHHh-CcCCEEEecCchhhh
Confidence 123455555555555544 888777766666543
No 368
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=28.21 E-value=75 Score=32.21 Aligned_cols=30 Identities=17% Similarity=0.063 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeeEeeeecCCCC
Q 012112 196 HGLKEVYEAIEIVKLCGVENWSLDLISSLPH 226 (471)
Q Consensus 196 ~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg 226 (471)
-|.+++.+.|+.|++.|++ |-+|+++..-+
T Consensus 76 Gt~~df~~lv~~aH~~Gi~-VilD~V~NH~~ 105 (483)
T 3bh4_A 76 GTKSELQDAIGSLHSRNVQ-VYGDVVLNHKA 105 (483)
T ss_dssp CCHHHHHHHHHHHHHTTCE-EEEEECCSEEC
T ss_pred CCHHHHHHHHHHHHHCCCE-EEEEEccCccc
Confidence 4799999999999999998 99999998644
No 369
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=28.10 E-value=75 Score=32.21 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeeEeeeecCCCC
Q 012112 196 HGLKEVYEAIEIVKLCGVENWSLDLISSLPH 226 (471)
Q Consensus 196 ~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg 226 (471)
-|.+++.+.|+.|++.|++ |-+|+++..-+
T Consensus 80 Gt~~df~~Lv~~aH~~Gi~-VilD~V~NH~~ 109 (485)
T 1wpc_A 80 GTRSQLQAAVTSLKNNGIQ-VYGDVVMNHKG 109 (485)
T ss_dssp CCHHHHHHHHHHHHHTTCE-EEEEECCSEEC
T ss_pred CCHHHHHHHHHHHHHCCCE-EEEEEeccccC
Confidence 4799999999999999998 99999988643
No 370
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=27.95 E-value=1.8e+02 Score=26.56 Aligned_cols=114 Identities=11% Similarity=0.078 Sum_probs=64.2
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCC--C---CCCHHHHHHHHH
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSL--P---HQTPQMWEESLR 237 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl--P---gqT~e~~~~~l~ 237 (471)
++.++.++++|++.|.+.- . . . +..+..+.+++.|+.-.++ ..-++ | .++.+.+++.++
T Consensus 34 ~~~l~~~~~~G~~~vEl~~--~-------~--~----~~~~~~~~l~~~gl~~~~~-~~~~~~~~~~~~~~~~~~~~~i~ 97 (301)
T 3cny_A 34 QQLLSDIVVAGFQGTEVGG--F-------F--P----GPEKLNYELKLRNLEIAGQ-WFSSYIIRDGIEKASEAFEKHCQ 97 (301)
T ss_dssp HHHHHHHHHHTCCEECCCT--T-------C--C----CHHHHHHHHHHTTCEECEE-EEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEecC--C-------C--C----CHHHHHHHHHHCCCeEEEE-eccCCCChhhHHHHHHHHHHHHH
Confidence 5788999999999988861 1 1 1 3445556778889873333 11111 1 123567888899
Q ss_pred HHHhCCCCcEEEEeccccC-CChhhhcccCCCCCCCCH---HHHHHHHHHHHHHHHHCCCc
Q 012112 238 RTVGAQPKHVSVYDLQVEQ-GTKFGILYTPGEFPLPTE---TQSANFYRMASSMLSSAGYR 294 (471)
Q Consensus 238 ~~~~l~p~his~y~l~~~p-gT~l~~~~~~g~~~~p~~---~~~~~~~~~~~~~L~~~Gy~ 294 (471)
.+.+++++.|.+.+..... |..-.. . ........+ +...+.+..+.+..++.|..
T Consensus 98 ~a~~lG~~~v~~~~~~~~~~G~~~~~-~-~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~ 156 (301)
T 3cny_A 98 YLKAINAPVAVVSEQTYTIQRSDTAN-I-FKDKPYFTDKEWDEVCKGLNHYGEIAAKYGLK 156 (301)
T ss_dssp HHHHTTCCEEEEEECTTCCTTCSSCC-T-TTCCCCCCHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHcCCCEEEecCCCccccCcccCC-c-ccccccCcHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 9999999988776511000 110000 0 000000022 34456677777888888864
No 371
>1gnx_A Beta-glucosidase; hydrolase, glycosyltransferase, family 1 of glycosyl hydrolase; HET: SUC; 1.68A {Streptomyces SP} SCOP: c.1.8.4 PDB: 1gon_A
Probab=27.86 E-value=39 Score=34.75 Aligned_cols=93 Identities=17% Similarity=0.192 Sum_probs=56.3
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHc-CCCC--CHHHHHHHHHHHHHcCCCeeEeeee-cCCCC-----------C
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSC-GRAH--GLKEVYEAIEIVKLCGVENWSLDLI-SSLPH-----------Q 227 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l-~R~~--t~~~~~~ai~~~~~~G~~~v~~DlI-~GlPg-----------q 227 (471)
+|.++.|+++|++.+.++| |- .+++-.= +... ..+-..+.++.+++.||+ .-++|- +++|- +
T Consensus 74 ~eDi~lm~~lG~~~yRfsI-sW-sRI~P~g~g~~n~~gl~~Y~~lid~l~~~GI~-p~vtL~H~d~P~~L~~~GGw~~r~ 150 (479)
T 1gnx_A 74 REDVALMAELGLGAYRFSL-AW-PRIQPTGRGPALQKGLDFYRRLADELLAKGIQ-PVATLYHWDLPQELENAGGWPERA 150 (479)
T ss_dssp HHHHHHHHHTTCSEEEEEC-CH-HHHSGGGSSSCCHHHHHHHHHHHHHHHHTTCE-EEEEEESSCCBHHHHHTTCTTSTH
T ss_pred HHHHHHHHHcCCCEEEecc-cH-HHhccCCCCCcCHHHHHHHHHHHHHHHHcCCE-EEEEeCCCcccHHHHhcCCCCCHH
Confidence 6889999999999877777 32 2232211 2111 244567889999999998 677774 66662 2
Q ss_pred CHHHHHHHHHHHHhCCCCcEEEEeccccCCC
Q 012112 228 TPQMWEESLRRTVGAQPKHVSVYDLQVEQGT 258 (471)
Q Consensus 228 T~e~~~~~l~~~~~l~p~his~y~l~~~pgT 258 (471)
+.+.+.+-.+.+.+.=-++|..+...-||..
T Consensus 151 ~v~~F~~ya~~~~~~~gd~V~~W~t~NEp~~ 181 (479)
T 1gnx_A 151 TAERFAEYAAIAADALGDRVKTWTTLNEPWC 181 (479)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHhCCcceeEEEecCcch
Confidence 3455555555554432244555554445543
No 372
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=27.73 E-value=3.3e+02 Score=25.78 Aligned_cols=42 Identities=12% Similarity=0.082 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHh
Q 012112 198 LKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVG 241 (471)
Q Consensus 198 ~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~ 241 (471)
.++..+..+.+.++|.+.+-+--=|..| |.+.+.+-.+.+.+
T Consensus 88 t~~ai~la~~A~~~Gadavlv~~P~~~~--s~~~l~~~f~~va~ 129 (313)
T 3dz1_A 88 FAAMRRLARLSMDAGAAGVMIAPPPSLR--TDEQITTYFRQATE 129 (313)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCCTTCC--SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCC--CHHHHHHHHHHHHH
Confidence 4444455555555555543332222122 44555554444443
No 373
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Probab=27.67 E-value=25 Score=37.85 Aligned_cols=28 Identities=7% Similarity=0.109 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeeEeeeecCC
Q 012112 196 HGLKEVYEAIEIVKLCGVENWSLDLISSL 224 (471)
Q Consensus 196 ~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl 224 (471)
-+.+++.+.++.|++.|++ |-+|+++..
T Consensus 113 Gt~~dfk~Lv~~aH~~GI~-VilD~V~NH 140 (686)
T 1d3c_A 113 GTIADFQNLIAAAHAKNIK-VIIDFAPNH 140 (686)
T ss_dssp CCHHHHHHHHHHHHHTTCE-EEEEECTTE
T ss_pred CCHHHHHHHHHHHHHCCCE-EEEEeCcCc
Confidence 3799999999999999998 999999875
No 374
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A*
Probab=27.58 E-value=31 Score=35.85 Aligned_cols=69 Identities=16% Similarity=0.231 Sum_probs=43.3
Q ss_pred HHHHHHHHCCCCEEEEcc--CCCCH------HHHHHcCC-CCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHH
Q 012112 164 RKMEELMDLGVNRVSLGV--QAFQD------ELLKSCGR-AHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWE 233 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGv--QS~~d------~~L~~l~R-~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~ 233 (471)
++|..|+++||+.|-|.. +|-+. .-...+.. -.|.+++.+.++.+++.|++ |-+|++++.-+..-.-+.
T Consensus 35 ~~Ldyl~~LGv~~I~l~Pi~~~~~~~~GY~~~dy~~idp~~Gt~~df~~lv~~~h~~Gi~-VilD~V~NH~s~~~~~f~ 112 (543)
T 2zic_A 35 SKLDYLQKLGVMAIWLSPVYDSPMDDNGYDIANYEAIADIFGNMADMDNLLTQAKMRGIK-IIMDLVVNHTSDEHAWFI 112 (543)
T ss_dssp HTHHHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHTTTCE-EEEEECCSBCCTTSHHHH
T ss_pred HHHHHHHHcCCCEEEECCcccCCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCE-EEEEEecCcccccchhhH
Confidence 456666667777665542 11110 00011222 23789999999999999998 999999987665433333
No 375
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=27.55 E-value=1.7e+02 Score=28.98 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCC-CHHHHHHcC
Q 012112 128 VPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAF-QDELLKSCG 193 (471)
Q Consensus 128 l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~-~d~~L~~l~ 193 (471)
++.+++..|.+..++. + +.+-+.| ++.+.++.+.+.|+..+-||-=.. |-.+|+.++
T Consensus 98 l~~e~~~~L~~~~~~~-G------i~~~stp--fD~~svd~l~~~~vd~~KIgS~~~~N~pLL~~va 155 (385)
T 1vli_A 98 MPAEWILPLLDYCREK-Q------VIFLSTV--CDEGSADLLQSTSPSAFKIASYEINHLPLLKYVA 155 (385)
T ss_dssp SCGGGHHHHHHHHHHT-T------CEEECBC--CSHHHHHHHHTTCCSCEEECGGGTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc-C------CcEEEcc--CCHHHHHHHHhcCCCEEEECcccccCHHHHHHHH
Confidence 5777787777776653 3 3333445 799999999999999999884433 334555543
No 376
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=27.47 E-value=88 Score=29.58 Aligned_cols=116 Identities=12% Similarity=0.183 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCC--HHHHHHcCCCCCHHH
Q 012112 123 GTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQ--DELLKSCGRAHGLKE 200 (471)
Q Consensus 123 GTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~--d~~L~~l~R~~t~~~ 200 (471)
|.||. +++.+.++++.|++.. -+-...+|.+..... .++. ..+.+..-.-.|+.+=|.| +.+. ..+.+.
T Consensus 56 G~~s~-d~~~~~e~~~~IR~~~-pd~ii~~Ttg~~~~~-~e~R-~~~~~~~Pe~aSl~~gs~Nf~~~v~-----~N~~~~ 126 (275)
T 3no5_A 56 ETPTS-NPDRFALVLEGIRKHA-PGMITQVSTGGRSGA-GNER-GAMLSLRPDMASLATGSVNFPTRVY-----DNPPEL 126 (275)
T ss_dssp SCEEC-CHHHHHHHHHHHHHHS-TTCEEEECCCCCTTC-CGGG-GTTGGGCCSEEEEECSCEECSSSEE-----CCCHHH
T ss_pred CCcCC-CHHHHHHHHHHHHHhC-CCeEEEeCCCCCCCC-HHHH-hhHhhcCCCEEEecCcccccccccc-----cCCHHH
Q ss_pred HHHHHHHHHHcCCC-------------------------eeEeeeecCCCCC---CHHHHHHHHHHHHhCCCCcE
Q 012112 201 VYEAIEIVKLCGVE-------------------------NWSLDLISSLPHQ---TPQMWEESLRRTVGAQPKHV 247 (471)
Q Consensus 201 ~~~ai~~~~~~G~~-------------------------~v~~DlI~GlPgq---T~e~~~~~l~~~~~l~p~hi 247 (471)
+.+.++.+++.|+. -+.+.|++|.+|- |++++...++.+.+++++..
T Consensus 127 ~~~~~~~~~e~Gi~pE~e~fd~g~l~~~~~l~~~Gl~~~p~~~~~vlGv~~g~~~~~~~l~~~~~~l~~~~~~~~ 201 (275)
T 3no5_A 127 VDWLAAEMKTYGIKPEVEAFDLSMIFQAAAMQAAGAIVGPLHIQFVMGIKNAMPVDREVLEFYVQTLKRLSPDAT 201 (275)
T ss_dssp HHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHHHTSSCSSCEEEEEECCTTSCCCCHHHHHHHHHHHHHHCTTCE
T ss_pred HHHHHHHHHHcCCeeEEEEEcHHHHHHHHHHHHCCCCCCCeeEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCCCe
No 377
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=27.43 E-value=2.4e+02 Score=26.34 Aligned_cols=67 Identities=16% Similarity=0.046 Sum_probs=38.6
Q ss_pred HHHHHHHHCCCCEEEEccC----CCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCC-CCHHHHHHHHHH
Q 012112 164 RKMEELMDLGVNRVSLGVQ----AFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPH-QTPQMWEESLRR 238 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQ----S~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg-qT~e~~~~~l~~ 238 (471)
+.-+.+++.|+.-+++... ++++...+ ...+.+.++++.+++.|.+.|.+ .|.|. .+.+.|...++.
T Consensus 80 ~l~~~l~~~GL~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~A~~lG~~~v~~---~~~~~~~~~~~~~~~~~~ 151 (305)
T 3obe_A 80 DYKKMVDDAGLRISSSHLTPSLREYTKENMP-----KFDEFWKKATDIHAELGVSCMVQ---PSLPRIENEDDAKVVSEI 151 (305)
T ss_dssp HHHHHHHHTTCEEEEEBCCCSCCCCCGGGHH-----HHHHHHHHHHHHHHHHTCSEEEE---CCCCCCSSHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEeeccccccccchhhHH-----HHHHHHHHHHHHHHHcCCCEEEe---CCCCCCCCHHHHHHHHHH
Confidence 3445556666655555432 23333222 22567889999999999997664 34443 466666544443
No 378
>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A*
Probab=27.27 E-value=42 Score=36.26 Aligned_cols=61 Identities=20% Similarity=0.202 Sum_probs=44.8
Q ss_pred HHHHHHHHHCCCCEEEEcc-CCCC-HH--------------------------HHHHcCCC-CCHHHHHHHHHHHHHcCC
Q 012112 163 ARKMEELMDLGVNRVSLGV-QAFQ-DE--------------------------LLKSCGRA-HGLKEVYEAIEIVKLCGV 213 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGv-QS~~-d~--------------------------~L~~l~R~-~t~~~~~~ai~~~~~~G~ 213 (471)
.++|..|+++|||-|-|.. .... .. -...+... -+.+++.+.++.+++.|+
T Consensus 256 ~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~g~~n~~~~~~~d~GspY~i~d~~~~y~~idp~~Gt~edfk~LV~~aH~~GI 335 (695)
T 3zss_A 256 ARRLPAIAAMGFDVVYLPPIHPIGTTHRKGRNNTLSATGDDVGVPWAIGSPEGGHDSIHPALGTLDDFDHFVTEAGKLGL 335 (695)
T ss_dssp GGGHHHHHHTTCCEEEECCCSCBCCTTCCCGGGCSSCCTTCCCCTTSBCBTTBCTTSCCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCCEEEECCcccCCccccccccccccccccCCCCcccccCCCCCccccCcccCCHHHHHHHHHHHHHCCC
Confidence 3779999999999998752 2211 00 02334433 378999999999999999
Q ss_pred CeeEeeeecCC
Q 012112 214 ENWSLDLISSL 224 (471)
Q Consensus 214 ~~v~~DlI~Gl 224 (471)
. |-+|+++..
T Consensus 336 ~-VilD~V~Nh 345 (695)
T 3zss_A 336 E-IALDFALQC 345 (695)
T ss_dssp E-EEEEECCEE
T ss_pred E-EEEEeeccC
Confidence 8 999999974
No 379
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=27.25 E-value=43 Score=33.66 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCC
Q 012112 196 HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQ 227 (471)
Q Consensus 196 ~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgq 227 (471)
-+.++..+.++.+++.|++ |-+|++++.=+.
T Consensus 84 Gt~~df~~lv~~~H~~Gi~-VilD~V~NH~~~ 114 (435)
T 1mxg_A 84 GSKEELVRLIQTAHAYGIK-VIADVVINHRAG 114 (435)
T ss_dssp CCHHHHHHHHHHHHHTTCE-EEEEECCSBCCC
T ss_pred CCHHHHHHHHHHHHHCCCE-EEEEECcccccC
Confidence 3799999999999999998 999999986443
No 380
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=27.22 E-value=1.2e+02 Score=28.36 Aligned_cols=84 Identities=15% Similarity=0.180 Sum_probs=62.8
Q ss_pred cEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHH----HHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCC
Q 012112 150 AEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDE----LLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLP 225 (471)
Q Consensus 150 ~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~----~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlP 225 (471)
.++.+|++| +++.++...+..-.++.+-.+.=.+- -|.. ..+.+..+++.++++|+. ||+-+= |
T Consensus 66 ~~lNlE~a~---t~emi~ial~~kP~~vtLVPEkreE~TTegGldv-----~~~~L~~~i~~L~~~GIr-VSLFID---p 133 (260)
T 3o6c_A 66 SPVNLECAL---NDEILNLALKLKPHRVTLVPEKREELTTEGGLCL-----NHAKLKQSIEKLQNANIE-VSLFIN---P 133 (260)
T ss_dssp SCEEEEECS---CHHHHHHHHHHCCSEEEECCCSGGGBCTTSSBCT-----TCTTHHHHHHHHHHTTCE-EEEEEC---S
T ss_pred CCEEeecCC---CHHHHHHHHHcCCCEEEECCCCCCccCCCCChhh-----CHHHHHHHHHHHHHCCCE-EEEEeC---C
Confidence 579999987 89999999999999999987653221 1211 345678899999999997 787431 2
Q ss_pred CCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 226 HQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 226 gqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
. .+.++.+.+++.+.|-+|.
T Consensus 134 d------~~qi~aA~~~GAd~IELhT 153 (260)
T 3o6c_A 134 S------LEDIEKSKILKAQFIELHT 153 (260)
T ss_dssp C------HHHHHHHHHTTCSEEEECC
T ss_pred C------HHHHHHHHHhCCCEEEEec
Confidence 2 2457888999999998875
No 381
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=27.10 E-value=1e+02 Score=25.80 Aligned_cols=49 Identities=14% Similarity=-0.024 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHCCCEEEecCcccchhhhhhhhhhhhhhhcccccceeeecCchhhchHHHHHHHH
Q 012112 401 TLCKAYKPYIESGHVICLDEWRRAMNIEEFNSLLLDETKIGNRLAYFRLSDPEGFLLSNELISHA 465 (471)
Q Consensus 401 ~~~~~~~~~~~~gll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lt~~~G~~~~n~i~~~~ 465 (471)
.+-+.|.+|+++|||...... .+..+.+.-+.+|| ++|.........++
T Consensus 70 tLYp~L~rLe~~GlI~~~~~~---------------~~~~g~~rk~Y~LT-~~Gr~~l~~~~~~~ 118 (138)
T 2e1n_A 70 VLYTALKFLEDEQIISGYWKK---------------VEGRGRPRRMYQLA-QANDDRSRDLAQLW 118 (138)
T ss_dssp HHHHHHHHHHHTTSEEEEEEC---------------CTTCSSCEEEEEES-CSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEeec---------------ccCCCCCcEEEEEC-HHHHHHHHHHHHHH
Confidence 466899999999999864210 00001222368997 99999887776554
No 382
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=27.02 E-value=3.1e+02 Score=26.07 Aligned_cols=30 Identities=3% Similarity=-0.055 Sum_probs=15.0
Q ss_pred eecCCCCCCHHHHHHHHHHHHhCCCCcEEE
Q 012112 220 LISSLPHQTPQMWEESLRRTVGAQPKHVSV 249 (471)
Q Consensus 220 lI~GlPgqT~e~~~~~l~~~~~l~p~his~ 249 (471)
+|.|.-+.+.++..+..+.+.+++++-+.+
T Consensus 95 ViaGvg~~st~eai~la~~A~~~Gadavlv 124 (314)
T 3qze_A 95 VIAGTGANSTREAVALTEAAKSGGADACLL 124 (314)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred EEEeCCCcCHHHHHHHHHHHHHcCCCEEEE
Confidence 444554444555555555555555554433
No 383
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=26.97 E-value=4e+02 Score=25.02 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHcCCC
Q 012112 198 LKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 198 ~~~~~~ai~~~~~~G~~ 214 (471)
.++..+..+.+.++|.+
T Consensus 89 t~~ai~la~~a~~~Gad 105 (301)
T 3m5v_A 89 THEAVGLAKFAKEHGAD 105 (301)
T ss_dssp HHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 34444444555555554
No 384
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*
Probab=26.93 E-value=1.8e+02 Score=27.86 Aligned_cols=119 Identities=8% Similarity=0.017 Sum_probs=74.0
Q ss_pred eeEEEEcCC-C-CC--CCCHHHHHHHHHHHHHHcCCCCCcEEEE-Ee-cCCCCCHHHHHHHHHCCCC------EEEEccC
Q 012112 115 LETVFFGGG-T-PS--LVPPRFVSSILDTLTDKFGLSLDAEISM-EM-DPGTFDARKMEELMDLGVN------RVSLGVQ 182 (471)
Q Consensus 115 v~~i~fGGG-T-ps--~l~~~~l~~ll~~l~~~~~l~~~~eiti-E~-~P~~l~~e~l~~l~~~Gvn------rvsiGvQ 182 (471)
.+-|-+||. | |. -.+++...++++.+++.++ ..+++ -+ ||+ .+.+.++.-.++|.. .++-+
T Consensus 88 AdiIDIg~~StrP~~~~vs~eee~~vV~~v~~~~~----vplsI~DT~~~~-~~~~V~eaal~aga~~k~iINdvs~~-- 160 (310)
T 2h9a_B 88 ADIVALRLVSAHPDGQNRSGAELAEVCKAVADAID----VPLMIIGCGVEE-KDAEIFPVIGEALSGRNCLLSSATKD-- 160 (310)
T ss_dssp CSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHCS----SCEEEECCSCHH-HHHHHHHHHHHHTTTSCCEEEEECTT--
T ss_pred CcEEEEeCccCCCCCCCCCHHHHHHHHHHHHHhCC----ceEEEECCCCCC-CCHHHHHHHHHhCCCCCCEEEECCCC--
Confidence 567778873 3 53 2467777778888887753 45777 32 221 566777766666643 33332
Q ss_pred CCCHHHHHHc---CC----CC--CHHHHHHHHHHHHHcCC--CeeEeeeecCCCCCCHHHHHHHHHHHHh
Q 012112 183 AFQDELLKSC---GR----AH--GLKEVYEAIEIVKLCGV--ENWSLDLISSLPHQTPQMWEESLRRTVG 241 (471)
Q Consensus 183 S~~d~~L~~l---~R----~~--t~~~~~~ai~~~~~~G~--~~v~~DlI~GlPgqT~e~~~~~l~~~~~ 241 (471)
-+++++... +- -| +.+...+.++.+.++|+ ++|-+|-.+|..|-+.+.-.++++.+..
T Consensus 161 -~~~~~~~~aa~~g~~vv~m~~~dv~~l~~~~~~a~~~Gi~~e~IilDPg~g~~g~~~e~~~~~l~~ir~ 229 (310)
T 2h9a_B 161 -NYKPIVATCMVHGHSVVASAPLDINLSKQLNIMIMEMNLAPNRIIMDPLIGALGYGIEYSYSIIERMRL 229 (310)
T ss_dssp -THHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHTTTCCGGGEEEECCCCCTTTTHHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHhCCCEEEEChhHHHHHHHHHHHHHHCCCChhhEEEeCCCccccCchHhHHHHHHHHHH
Confidence 234454431 11 11 46778888899999999 5799999999768665555455555554
No 385
>1v08_A Beta-glucosidase; glycoside hydrolase, dimboa-glucoside, inhibitor, PEST defense, family GH1, hydrolase, chloroplast, transit peptide, 3D-structure; HET: NTZ; 1.9A {Zea mays} SCOP: c.1.8.4 PDB: 1e4l_A* 1e4n_A* 1e56_A* 1e55_A* 1e1e_A 1e1f_A* 1h49_A* 1hxj_A
Probab=26.69 E-value=49 Score=34.32 Aligned_cols=92 Identities=12% Similarity=0.182 Sum_probs=59.5
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC---CCC---HHHHHHHHHHHHHcCCCeeEeeee-cCCCC---------
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGR---AHG---LKEVYEAIEIVKLCGVENWSLDLI-SSLPH--------- 226 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R---~~t---~~~~~~ai~~~~~~G~~~v~~DlI-~GlPg--------- 226 (471)
+|.+++|+++|+|.+.+++ |- .+++-. ++ ..+ .+-..+.++.++++|++ +-+.|. +++|-
T Consensus 81 ~eDi~lm~~~G~~~~R~si-sW-sRi~P~-g~~~g~~n~~G~~~y~~lid~l~~~GI~-p~vtL~H~d~P~~L~~~yggw 156 (512)
T 1v08_A 81 KTDVRLLKEMGMDAYRFSI-SW-PRILPK-GTKEGGINPDGIKYYRNLINLLLENGIE-PYVTIFHWDVPQALEEKYGGF 156 (512)
T ss_dssp HHHHHHHHHTTCSEEEEEC-CH-HHHSTT-SSTTTCCCHHHHHHHHHHHHHHHHTTCE-EEEEEESSCCBHHHHHHHCGG
T ss_pred HHHHHHHHHhCCCeEeccc-CH-hhhCCC-CCcCCCcCHHHHHHHHHHHHHHHHCCCE-EEEEeCCCCCCHHHHhhCCCC
Confidence 5889999999999888888 43 233322 21 234 66788899999999998 666664 55652
Q ss_pred ------CCHHHHHHHHHHHHhCCCCcEEEEeccccCCC
Q 012112 227 ------QTPQMWEESLRRTVGAQPKHVSVYDLQVEQGT 258 (471)
Q Consensus 227 ------qT~e~~~~~l~~~~~l~p~his~y~l~~~pgT 258 (471)
++.+.+.+-.+.+.+.=-++|..+...-||+.
T Consensus 157 ~~r~~c~~~~~f~~ya~~~~~~~gd~V~~W~t~NEp~~ 194 (512)
T 1v08_A 157 LDKSHKSIVEDYTYFAKVCFDNFGDKVKNWLTFNDPQT 194 (512)
T ss_dssp GCTTSSHHHHHHHHHHHHHHHHHTTTCCEEEEEECHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhCCcceEEEEcccchh
Confidence 34555555555555432355666655555543
No 386
>2xhy_A BGLA, 6-phospho-beta-glucosidase BGLA; hydrolase, glycosidase; 2.30A {Escherichia coli}
Probab=26.62 E-value=68 Score=32.92 Aligned_cols=93 Identities=12% Similarity=0.138 Sum_probs=57.6
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcC-CC-CC---HHHHHHHHHHHHHcCCCeeEeeee-cCCCC----------
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCG-RA-HG---LKEVYEAIEIVKLCGVENWSLDLI-SSLPH---------- 226 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~-R~-~t---~~~~~~ai~~~~~~G~~~v~~DlI-~GlPg---------- 226 (471)
++.++.|+++|++.+.+++ | =.+++-. | ++ .+ .+-..+.++.++++|+. +-++|- +++|.
T Consensus 74 ~eDi~lm~~~G~~~~R~si-s-W~Ri~P~-G~~g~~n~~gl~~yd~lid~l~~~GI~-pivtL~H~d~P~~l~~~~ggw~ 149 (479)
T 2xhy_A 74 KEDIKLFAEMGFKCFRTSI-A-WTRIFPK-GDEAQPNEEGLKFYDDMFDELLKYNIE-PVITLSHFEMPLHLVQQYGSWT 149 (479)
T ss_dssp HHHHHHHHHHTCSEEEEEC-C-HHHHSSS-SCCSSCCHHHHHHHHHHHHHHHHTTCE-EEEEEESSCCBHHHHHHSCGGG
T ss_pred HHHHHHHHHcCCCEEEeeC-C-HHHhCCC-CCCCCcCHHHHHHHHHHHHHHHHCCCE-EEEEcCCCCCCHHHHhhcCCCC
Confidence 6889999999999887777 2 1122111 1 11 12 45577889999999997 777775 55542
Q ss_pred --CCHHHHHHHHHHHHhCCCCcEEEEeccccCCCh
Q 012112 227 --QTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTK 259 (471)
Q Consensus 227 --qT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~ 259 (471)
++.+.+.+-.+.+.+.=-++|..+...-||...
T Consensus 150 ~~~~~~~F~~ya~~~~~~~gd~V~~w~t~NEp~~~ 184 (479)
T 2xhy_A 150 NRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQ 184 (479)
T ss_dssp STHHHHHHHHHHHHHHHHTTTTCCEEEEETTTTGG
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcchh
Confidence 134445555555544333466666666677654
No 387
>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A
Probab=26.59 E-value=37 Score=36.20 Aligned_cols=75 Identities=12% Similarity=0.144 Sum_probs=52.2
Q ss_pred EEEEecCCCCC------HHHHHHHHHCCCCEEEEc-cCCCC---------HHHHHHcCCC-CCHHHHHHHHHHHHHcCCC
Q 012112 152 ISMEMDPGTFD------ARKMEELMDLGVNRVSLG-VQAFQ---------DELLKSCGRA-HGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 152 itiE~~P~~l~------~e~l~~l~~~GvnrvsiG-vQS~~---------d~~L~~l~R~-~t~~~~~~ai~~~~~~G~~ 214 (471)
+-.++.|+++. .++|..|+++|||.|-|. +.... ..-...+... -|.+++.+.++.+++.|+.
T Consensus 92 viY~i~~~~F~Gdl~gi~~~LdyL~~LGv~~I~L~Pi~~~~~~~~~~GY~~~dy~~vdp~~Gt~~df~~Lv~~aH~~GI~ 171 (644)
T 3czg_A 92 LGYSAYADRFAGTLQGVAERVPYLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVALTSRLREAGIS 171 (644)
T ss_dssp CEEEECHHHHHSSHHHHHHTHHHHHHHTCCEEEECCCBCBCSSCCTTTTSBSCTTSBCGGGCCHHHHHHHHHHHHHTTCE
T ss_pred EEEEEechhhCCCHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCE
Confidence 55677775431 377899999999999874 22211 1111223322 3789999999999999998
Q ss_pred eeEeeeecCCCCC
Q 012112 215 NWSLDLISSLPHQ 227 (471)
Q Consensus 215 ~v~~DlI~GlPgq 227 (471)
|-+|++++.-+.
T Consensus 172 -VilD~V~NH~s~ 183 (644)
T 3czg_A 172 -LCADFVLNHTAD 183 (644)
T ss_dssp -EEEEECCSEEET
T ss_pred -EEEEEecCCccc
Confidence 999999986544
No 388
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=26.47 E-value=1.2e+02 Score=28.63 Aligned_cols=83 Identities=11% Similarity=0.126 Sum_probs=53.5
Q ss_pred HHHHHHHHHCCCCEEEEccC--CCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeec-C----CC----------
Q 012112 163 ARKMEELMDLGVNRVSLGVQ--AFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLIS-S----LP---------- 225 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQ--S~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~-G----lP---------- 225 (471)
++.++.++++|++.|.+... .++..-.. .+.+++.+..+.++++|+.-+++..-. | -|
T Consensus 18 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~gl~i~~~~~~~~g~~~~~p~~~~~~~~~~ 92 (340)
T 2zds_A 18 EEVCRLARDFGYDGLELACWGDHFEVDKAL-----ADPSYVDSRHQLLDKYGLKCWAISNHLVGQAVCDAIIDERHEAIL 92 (340)
T ss_dssp HHHHHHHHHHTCSEEEEESSTTTCCHHHHH-----HCTTHHHHHHHHHHHTTCEEEEEEEHHHHHHHHCSCCSHHHHHHS
T ss_pred HHHHHHHHHcCCCEEEeccccccCCccccc-----cCHHHHHHHHHHHHHcCCeEEEeeccccccccccccccccccccc
Confidence 57899999999999999863 23321110 123456667778889999733322211 1 13
Q ss_pred --------C------CCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 226 --------H------QTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 226 --------g------qT~e~~~~~l~~~~~l~p~his~y 250 (471)
. ++.+.+++.++.+.+++++.|.+.
T Consensus 93 ~~~l~~~~~~~~~r~~~~~~~~~~i~~A~~lGa~~v~~~ 131 (340)
T 2zds_A 93 PARIWGDGDAEGVRQRAAAEIKDTARAAARLGVDTVIGF 131 (340)
T ss_dssp CHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEC
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 1 124677888999999999988764
No 389
>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A*
Probab=26.33 E-value=35 Score=38.56 Aligned_cols=29 Identities=7% Similarity=0.091 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeeEeeeecCCC
Q 012112 196 HGLKEVYEAIEIVKLCGVENWSLDLISSLP 225 (471)
Q Consensus 196 ~t~~~~~~ai~~~~~~G~~~v~~DlI~GlP 225 (471)
-+.+++.+.|+.++++||+ |-+|+++..=
T Consensus 910 Gt~edfk~LV~alH~~GI~-VIlDvV~NHt 938 (1108)
T 3ttq_A 910 GTDGDLRATIQALHHANMQ-VMADVVDNQV 938 (1108)
T ss_dssp CCHHHHHHHHHHHHHTTCE-EEEEECCSEE
T ss_pred CCHHHHHHHHHHHHHCCCE-EEEEeccccc
Confidence 3789999999999999998 9999998763
No 390
>2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis, transferase, ligase, multifunctional enzyme; HET: PMM; 2.3A {Saccharomyces cerevisiae}
Probab=26.28 E-value=5.6e+02 Score=26.53 Aligned_cols=124 Identities=15% Similarity=0.127 Sum_probs=75.1
Q ss_pred eeEEEEcC-CC-CC---CCCHHHHHHHHHHHHHHcC--C--CCCcEEEEEecCCCCCHHHHHHHHHCCCCEE-EEccCCC
Q 012112 115 LETVFFGG-GT-PS---LVPPRFVSSILDTLTDKFG--L--SLDAEISMEMDPGTFDARKMEELMDLGVNRV-SLGVQAF 184 (471)
Q Consensus 115 v~~i~fGG-GT-ps---~l~~~~l~~ll~~l~~~~~--l--~~~~eitiE~~P~~l~~e~l~~l~~~Gvnrv-siGvQS~ 184 (471)
.+-|-+|| .| |. +-..+++++++-.|+..-. . ..++.++| ++...+.++.--++|.+-| ++.-..+
T Consensus 268 AdIIDIGgeSTRPGa~~vs~eEEl~RvvpvI~~i~~~~~~~~~~vpISI----DT~~a~VaeaAl~aGadIINDVsg~~~ 343 (545)
T 2bmb_A 268 SVIIDVGGCSTRPNSIQASEEEEIRRSIPLIKAIRESTELPQDKVILSI----DTYRSNVAKEAIKVGVDIINDISGGLF 343 (545)
T ss_dssp CEEEEEECSCCSTTCCCCCHHHHHHHHHHHHHHHHHCSSSCGGGEEEEE----ECCCHHHHHHHHHTTCCEEEETTTTSS
T ss_pred ceEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCeEEE----eCCcHHHHHHHHHcCCCEEEeCCCCcC
Confidence 67788987 33 42 2234677777655554321 0 01334554 3667888888888887655 3444445
Q ss_pred CHHHHHHcCCC--------------CC-------------------------------------H-----HHHHHHHHHH
Q 012112 185 QDELLKSCGRA--------------HG-------------------------------------L-----KEVYEAIEIV 208 (471)
Q Consensus 185 ~d~~L~~l~R~--------------~t-------------------------------------~-----~~~~~ai~~~ 208 (471)
++++++.+.+. .+ . +...+.++.+
T Consensus 344 d~~m~~vva~~~~~~vVlmH~rG~p~tm~~~~~y~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vv~~v~~~l~~~i~~a 423 (545)
T 2bmb_A 344 DSNMFAVIAENPEICYILSHTRGDISTMNRLAHYENFALGDSIQQEFVHNTDIQQLDDLKDKTVLIRNVGQEIGERYIKA 423 (545)
T ss_dssp CTTHHHHHHTCTTSEEEEECCCSCTTTGGGCCCCSSCTTTTTEEEEEETTEEGGGSTTHHHHCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhCCCeEEEECCCCCCCCccccccccccccccccchhccccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 77776553322 01 0 1233567788
Q ss_pred HHcCCC--eeEeeeecCCCCCCHHHHHHHHHHHHhCC
Q 012112 209 KLCGVE--NWSLDLISSLPHQTPQMWEESLRRTVGAQ 243 (471)
Q Consensus 209 ~~~G~~--~v~~DlI~GlPgqT~e~~~~~l~~~~~l~ 243 (471)
.++|+. +|-+|--+|+ +-|.++=.+.|+.+.++.
T Consensus 424 ~~~GI~~~~IilDPGiGF-~Kt~~~nl~lL~~l~~l~ 459 (545)
T 2bmb_A 424 IDNGVKRWQILIDPGLGF-AKTWKQNLQIIRHIPILK 459 (545)
T ss_dssp HHTTCCGGGEEEECCTTS-SCCHHHHHHHHHTHHHHT
T ss_pred HHcCCCHHHEEEeCCCCc-ccChHHHHHHHHHHHHHH
Confidence 899997 6889999998 777776666666655543
No 391
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=26.26 E-value=2.1e+02 Score=27.41 Aligned_cols=106 Identities=22% Similarity=0.268 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec--CCCCCHHHHHHH
Q 012112 92 SNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMD--PGTFDARKMEEL 169 (471)
Q Consensus 92 ~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~--P~~l~~e~l~~l 169 (471)
..|+..+.+++.... ++.|.+. +|-.++.|.++.++++.+++.++-.+...+.+-++ .+.-....+..+
T Consensus 150 ~~~~~~~~~~~~~~G--------~~~i~l~-DT~G~~~P~~v~~lv~~l~~~~~~~~~~~i~~H~Hnd~GlA~AN~laA~ 220 (325)
T 3eeg_A 150 QAFLARMVEAVIEAG--------ADVVNIP-DTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAAL 220 (325)
T ss_dssp HHHHHHHHHHHHHHT--------CSEEECC-BSSSCCCHHHHHHHHHHHHHHCSCGGGSEEEECBCCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--------CCEEEec-CccCCcCHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCHHHHHHHHHH
Confidence 345556666665431 5678886 47778899999999999999875211245665553 222244555555
Q ss_pred HHCCCCEEEEccCCCCHHHHHHcCCC--CCHHHHHHHHHHHH-HcCCC
Q 012112 170 MDLGVNRVSLGVQAFQDELLKSCGRA--HGLKEVYEAIEIVK-LCGVE 214 (471)
Q Consensus 170 ~~~GvnrvsiGvQS~~d~~L~~l~R~--~t~~~~~~ai~~~~-~~G~~ 214 (471)
++|+++|.-.+-.+-. |. -..+++.-+++... ..|+.
T Consensus 221 -~aGa~~vd~tv~GlGe-------r~GN~~lE~vv~~L~~~~~~~g~~ 260 (325)
T 3eeg_A 221 -QNGARQVECTINGIGE-------RAGNTALEEVVMAMECHKETLGLE 260 (325)
T ss_dssp -HHTCCEEEEBGGGCCS-------TTCCCBHHHHHHHHHHTHHHHCEE
T ss_pred -HhCCCEEEEecccccc-------cccchhHHHHHHHHHhhhhccCCC
Confidence 4699999877765442 32 24555555554432 24554
No 392
>3u7v_A Beta-galactosidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel, glyco_hydro_42; HET: MSE; 1.80A {Caulobacter crescentus}
Probab=25.94 E-value=51 Score=34.47 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 160 TFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 160 ~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
.+.++.++.|+++|+|.|.++| + =..+.--.-..+.+.+.+.++.+++.|+.
T Consensus 73 r~~~~~W~~mKa~G~NtVr~~V-~--W~~hEP~~G~yDF~~LD~~ldla~e~GL~ 124 (552)
T 3u7v_A 73 SQMAKVWPAIEKVGANTVQVPI-A--WEQIEPVEGQFDFSYLDLLLEQARERKVR 124 (552)
T ss_dssp GGHHHHHHHHHHHTCSEEEEEE-E--HHHHCSBTTBCCCHHHHHHHHHHHHTTCE
T ss_pred hhhHHHHHHHHHhCCCEEEEEe-h--hhccCCCCCccChhhHHHHHHHHHHCCCE
Confidence 3457889999999999999997 2 11222112234667788999999999997
No 393
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=25.64 E-value=44 Score=26.35 Aligned_cols=41 Identities=5% Similarity=-0.019 Sum_probs=30.6
Q ss_pred ccccCCCCHhhHHHHhCCCh---HHHHHHHHHHHHHCCCEEEec
Q 012112 379 FRTARGVDLKSFGETFGCSL---VHTLCKAYKPYIESGHVICLD 419 (471)
Q Consensus 379 Lr~~~gi~~~~~~~~fg~~~---~~~~~~~~~~~~~~gll~~~~ 419 (471)
|....++...++.++.+.+. ...+...|++|+++|+|....
T Consensus 44 L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 44 IWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp HHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 33356889999998887531 235678899999999998754
No 394
>1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of glycosyl hydrol cellulose degradation; 1.60A {Clostridium cellulolyticum} SCOP: c.1.8.3
Probab=25.64 E-value=99 Score=30.13 Aligned_cols=126 Identities=8% Similarity=-0.004 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHCCCCEEEEccC--CCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCC--------C--
Q 012112 160 TFDARKMEELMDLGVNRVSLGVQ--AFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPH--------Q-- 227 (471)
Q Consensus 160 ~l~~e~l~~l~~~GvnrvsiGvQ--S~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg--------q-- 227 (471)
.++++.++.+++.|+|-|-|.+. .+.+..--.++ ....+.+.++|+.+++.|+. |-+|+-. .|+ .
T Consensus 61 ~~~~~di~~i~~~G~n~vRipv~w~~~~~~~~~~~~-~~~l~~l~~~v~~a~~~Gi~-vild~H~-~~~w~~~~~~~~~~ 137 (380)
T 1edg_A 61 KTTKQMIDAIKQKGFNTVRIPVSWHPHVSGSDYKIS-DVWMNRVQEVVNYCIDNKMY-VILNTHH-DVDKVKGYFPSSQY 137 (380)
T ss_dssp CCCHHHHHHHHHHTCCEEEECCCCGGGEETTTTEEC-HHHHHHHHHHHHHHHTTTCE-EEEECCS-CBCTTTSBCSSGGG
T ss_pred cccHHHHHHHHHcCCCEEEecccHHhhcCCCCCcCC-HHHHHHHHHHHHHHHHCCCE-EEEeCCC-chhhhcCCCCcccc
Confidence 37899999999999997777652 11110000000 00145678899999999997 8888753 232 1
Q ss_pred --CHHHH-HHHHHHHH-hCC-CCcEEEEeccccCCChhhhcccCCCC----CCCCH----HHHHHHHHHHHHHHHHCC
Q 012112 228 --TPQMW-EESLRRTV-GAQ-PKHVSVYDLQVEQGTKFGILYTPGEF----PLPTE----TQSANFYRMASSMLSSAG 292 (471)
Q Consensus 228 --T~e~~-~~~l~~~~-~l~-p~his~y~l~~~pgT~l~~~~~~g~~----~~p~~----~~~~~~~~~~~~~L~~~G 292 (471)
+.+.+ .+-.+.+. +++ -+.+-.|.+.=||...-. ...+ ...+. +...+.++.+.+.+++.|
T Consensus 138 ~~~~~~~~~~~w~~ia~~~~~~~~v~~~el~NEP~~~~~----~~~W~~~~~~g~~~~~~~~l~~~~~~~~~~IR~~g 211 (380)
T 1edg_A 138 MASSKKYITSVWAQIAARFANYDEHLIFEGMNEPRLVGH----ANEWWPELTNSDVVDSINCINQLNQDFVNTVRATG 211 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCTTEEEECCSSCCCTTS----TTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCEEEEEecCCCCcCCC----CcccccccCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 12333 33334443 333 223457888888754210 0011 00011 233577888888888876
No 395
>3up8_A Putative 2,5-diketo-D-gluconic acid reductase B; nysgrc, PSI-biology, structural genomics; 1.96A {Sinorhizobium meliloti}
Probab=25.59 E-value=1.6e+02 Score=27.88 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=40.3
Q ss_pred CCCCCCHHHHHHHHHHH-HhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc-eecccc
Q 012112 223 SLPHQTPQMWEESLRRT-VGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR-HYEISS 300 (471)
Q Consensus 223 GlPgqT~e~~~~~l~~~-~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~-~yeis~ 300 (471)
+.+..+.+.+++.++.- .+|+.++|-+|.+-- |... .+.+ +.+ .+.+.|.+.|.. .+.+||
T Consensus 97 ~~~~~~~~~i~~~~e~SL~rLg~dyiDl~llH~-p~~~------------~~~~---e~~-~al~~l~~~Gkir~iGvSn 159 (298)
T 3up8_A 97 WVDNYRHDAFIASVDESLRKLRTDHVDLLLLHW-PGSD------------VPMA---ERI-GALNEVRNAGKVRHIGISN 159 (298)
T ss_dssp CGGGCSHHHHHHHHHHHHHHHTSSCEEEEEESC-SCCS------------SCHH---HHH-HHHHHHHHTTSEEEEEEES
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCcEEEEEEcc-CCCC------------CCHH---HHH-HHHHHHHHcCCccEEEEcC
Confidence 33456778888887764 468999999998642 2110 0112 223 345667888976 468999
Q ss_pred ccC
Q 012112 301 YGE 303 (471)
Q Consensus 301 fa~ 303 (471)
|..
T Consensus 160 ~~~ 162 (298)
T 3up8_A 160 FNT 162 (298)
T ss_dssp CCH
T ss_pred CCH
Confidence 863
No 396
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=25.58 E-value=1.3e+02 Score=24.79 Aligned_cols=43 Identities=7% Similarity=0.156 Sum_probs=34.7
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEE
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVIC 417 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~ 417 (471)
.++..|.....+...++++++|.+.. .....+++|++.|++..
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg~s~~-tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIKLSPP-SVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHH-HHHHHHHHHHHCCCeEE
Confidence 44555666677999999999999864 46788999999999974
No 397
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=25.55 E-value=3.5e+02 Score=25.31 Aligned_cols=52 Identities=8% Similarity=0.044 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 197 GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 197 t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y 250 (471)
|.++..+.++.+.+.--. .+-+|.|.-+.+.++..+..+.+.+++.|.+.+-
T Consensus 52 s~~Er~~v~~~~~~~~~g--r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~ 103 (291)
T 3tak_A 52 SMEEHTQVIKEIIRVANK--RIPIIAGTGANSTREAIELTKAAKDLGADAALLV 103 (291)
T ss_dssp CHHHHHHHHHHHHHHHTT--SSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CHHHHHHHHHHHHHHhCC--CCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEc
Confidence 445555555555443111 1335566655566666666666666666655443
No 398
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=25.49 E-value=4.2e+02 Score=24.75 Aligned_cols=28 Identities=4% Similarity=-0.095 Sum_probs=13.0
Q ss_pred eecCCCCCCHHHHHHHHHHHHhCCCCcE
Q 012112 220 LISSLPHQTPQMWEESLRRTVGAQPKHV 247 (471)
Q Consensus 220 lI~GlPgqT~e~~~~~l~~~~~l~p~hi 247 (471)
+|.|.-+.+.++..+..+.+.+.++|-+
T Consensus 72 viaGvg~~~t~~ai~la~~A~~~Gadav 99 (294)
T 2ehh_A 72 VIAGTGGNATHEAVHLTAHAKEVGADGA 99 (294)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHTTCSEE
T ss_pred EEEecCCCCHHHHHHHHHHHHhcCCCEE
Confidence 4444444444444444444445555443
No 399
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=25.37 E-value=4.1e+02 Score=24.67 Aligned_cols=72 Identities=13% Similarity=0.081 Sum_probs=36.8
Q ss_pred HHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCC
Q 012112 166 MEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPK 245 (471)
Q Consensus 166 l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~ 245 (471)
++.+.+.|++-|-+.=-|+--. ..|.++-.+.++.+.+.- .. +|.|.-+.+.++..+..+.+.+++.|
T Consensus 25 v~~li~~Gv~gl~v~GttGE~~-------~Ls~~Er~~v~~~~~~~~-~g----vi~Gvg~~~t~~ai~la~~A~~~Gad 92 (286)
T 2r91_A 25 VKNITSKGVDVVFVAGTTGLGP-------ALSLQEKMELTDAATSAA-RR----VIVQVASLNADEAIALAKYAESRGAE 92 (286)
T ss_dssp HHHHHHTTCCEEEETSTTTTGG-------GSCHHHHHHHHHHHHHHC-SS----EEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHCCCCEEEECccccChh-------hCCHHHHHHHHHHHHHHh-CC----EEEeeCCCCHHHHHHHHHHHHhcCCC
Confidence 3334455666665543332111 124455555555555541 11 66666555666666666666666666
Q ss_pred cEEE
Q 012112 246 HVSV 249 (471)
Q Consensus 246 his~ 249 (471)
.+.+
T Consensus 93 avlv 96 (286)
T 2r91_A 93 AVAS 96 (286)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 400
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A*
Probab=25.33 E-value=36 Score=35.87 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHH
Q 012112 196 HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQ 230 (471)
Q Consensus 196 ~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e 230 (471)
.|.+++.+.|+.+++.|+. |-+|++++.-+..-.
T Consensus 85 Gt~~df~~lv~~~h~~Gi~-VilD~V~NH~~~~~~ 118 (589)
T 3aj7_A 85 GTNEDCFALIEKTHKLGMK-FITDLVINHCSSEHE 118 (589)
T ss_dssp CCHHHHHHHHHHHHHTTCE-EEEEECCSBCCTTSH
T ss_pred CCHHHHHHHHHHHHHCCCE-EEEEecccccccchh
Confidence 3789999999999999998 999999998665433
No 401
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=25.27 E-value=1.5e+02 Score=27.17 Aligned_cols=49 Identities=18% Similarity=0.109 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 012112 229 PQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSS 290 (471)
Q Consensus 229 ~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~ 290 (471)
.+.+.+.+++|.++|+.++++|.++.+ -+++ | .++...++....+.|.+
T Consensus 33 ~~~l~~i~~~c~~~GI~~lTlYaFSte----N~kR--------p-~~Ev~~Lm~l~~~~l~~ 81 (227)
T 2vg0_A 33 AAKIAEMLRWCHEAGIELATVYLLSTE----NLQR--------D-PDELAALIEIITDVVEE 81 (227)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEEETG----GGGS--------C-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeccc----ccCC--------C-HHHHHHHHHHHHHHHHH
Confidence 688999999999999999999998744 2332 2 34445566666666665
No 402
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=25.23 E-value=1.6e+02 Score=23.24 Aligned_cols=35 Identities=11% Similarity=0.272 Sum_probs=27.9
Q ss_pred CHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCc
Q 012112 386 DLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEW 421 (471)
Q Consensus 386 ~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~ 421 (471)
+..++.++||++-. .+.+++..|.+.|+|....+.
T Consensus 35 s~~~La~~~~vSr~-tvr~al~~L~~~Gli~~~~~~ 69 (113)
T 3tqn_A 35 SIRKISTEYQINPL-TVSKAYQSLLDDNVIEKRRGL 69 (113)
T ss_dssp CHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEETTT
T ss_pred CHHHHHHHHCcCHH-HHHHHHHHHHHCCCEEEecCC
Confidence 66778888888853 567899999999999876543
No 403
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1
Probab=25.12 E-value=29 Score=36.25 Aligned_cols=66 Identities=12% Similarity=0.130 Sum_probs=42.6
Q ss_pred HHHHHHHHCCCCEEEEcc--CCCC------HHHHHHcCCC-CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHH
Q 012112 164 RKMEELMDLGVNRVSLGV--QAFQ------DELLKSCGRA-HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQ 230 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGv--QS~~------d~~L~~l~R~-~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e 230 (471)
++|..|+++||+.|-|.. +|-. ..-...+... -|.+++.+.++.+++.|+. |-+|++++.-+..-.
T Consensus 35 ~~ldyl~~LGv~~I~l~Pi~~~~~~~~GYd~~dy~~id~~~Gt~~df~~lv~~~h~~Gi~-VilD~V~NH~s~~~~ 109 (558)
T 1uok_A 35 SKLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDWDELLHEMHERNMK-LMMDLVVNHTSDEHN 109 (558)
T ss_dssp TTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHTTCE-EEEEECCSBCCTTSH
T ss_pred HHHHHHHHcCCCEEEECCcccCCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCE-EEEEEecccccccch
Confidence 456666777777765531 1111 1011112222 3789999999999999998 999999998665433
No 404
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=25.09 E-value=60 Score=30.62 Aligned_cols=56 Identities=14% Similarity=0.241 Sum_probs=41.1
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEcc
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGV 181 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGv 181 (471)
++.|-++ + ++++.+.++.+.++..++ .+.+++. +.++.+.++.+.++|++.+++|-
T Consensus 203 aD~I~ld--~---~~~~~l~~~v~~l~~~~~-----~~~i~As-GGI~~~ni~~~~~aGaD~i~vGs 258 (273)
T 2b7n_A 203 ADIVMCD--N---LSVLETKEIAAYRDAHYP-----FVLLEAS-GNISLESINAYAKSGVDAISVGA 258 (273)
T ss_dssp CSEEEEE--T---CCHHHHHHHHHHHHHHCT-----TCEEEEE-SSCCTTTHHHHHTTTCSEEECTH
T ss_pred CCEEEEC--C---CCHHHHHHHHHHhhccCC-----CcEEEEE-CCCCHHHHHHHHHcCCcEEEEcH
Confidence 4555554 2 467888888888876542 2455554 45799999999999999999984
No 405
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=25.03 E-value=4.8e+02 Score=25.35 Aligned_cols=92 Identities=11% Similarity=0.217 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCC-CHHHHHHcCCCCCHHHHHHHHH
Q 012112 128 VPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAF-QDELLKSCGRAHGLKEVYEAIE 206 (471)
Q Consensus 128 l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~-~d~~L~~l~R~~t~~~~~~ai~ 206 (471)
++.+++..|.+..++. + ..|. +.| ++.+.++.+.+.|+..+-||--.. |-..|+.+++
T Consensus 75 l~~e~~~~L~~~~~~~-G----i~~~--st~--fD~~svd~l~~~~v~~~KI~S~~~~N~pLL~~va~------------ 133 (350)
T 3g8r_A 75 LQPEQMQKLVAEMKAN-G----FKAI--CTP--FDEESVDLIEAHGIEIIKIASCSFTDWPLLERIAR------------ 133 (350)
T ss_dssp CCHHHHHHHHHHHHHT-T----CEEE--EEE--CSHHHHHHHHHTTCCEEEECSSSTTCHHHHHHHHT------------
T ss_pred CCHHHHHHHHHHHHHc-C----CcEE--ecc--CCHHHHHHHHHcCCCEEEECcccccCHHHHHHHHh------------
Confidence 5777777777776653 3 2344 334 789999999999999999985443 2234444433
Q ss_pred HHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 012112 207 IVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 207 ~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y 250 (471)
.|-. +=|=-|+ .|.++|...++.+.+.+.+ |.+.
T Consensus 134 ----~gKP---viLstGm--stl~Ei~~Ave~i~~~g~~-viLl 167 (350)
T 3g8r_A 134 ----SDKP---VVASTAG--ARREDIDKVVSFMLHRGKD-LTIM 167 (350)
T ss_dssp ----SCSC---EEEECTT--CCHHHHHHHHHHHHTTTCC-EEEE
T ss_pred ----hCCc---EEEECCC--CCHHHHHHHHHHHHHcCCC-EEEE
Confidence 3444 2244465 4999999999998887754 5553
No 406
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=24.96 E-value=1.8e+02 Score=25.46 Aligned_cols=77 Identities=6% Similarity=0.125 Sum_probs=47.9
Q ss_pred CCHHHHHHH-HH-CCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecC--CCC-CCHHHHHHH
Q 012112 161 FDARKMEEL-MD-LGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISS--LPH-QTPQMWEES 235 (471)
Q Consensus 161 l~~e~l~~l-~~-~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~G--lPg-qT~e~~~~~ 235 (471)
.+.+.|..+ ++ +|++. ++..+.+.-....+.+.+..+.+++.|+..+=.-+|=| ++| ++.++|.+.
T Consensus 116 ~~~~~L~~~a~~~~Gld~---------~~~~~~l~s~~~~~~v~~~~~~a~~~gV~gtPtfvvnG~~~~G~~~~e~l~~~ 186 (202)
T 3gha_A 116 VTPGLLGDLAKSTTKIKP---------ETLKENLDKETFASQVEKDSDLNQKMNIQATPTIYVNDKVIKNFADYDEIKET 186 (202)
T ss_dssp CCHHHHHHHHHHHSSSCH---------HHHHHHHHHTTTHHHHHHHHHHHHHTTCCSSCEEEETTEECSCTTCHHHHHHH
T ss_pred cCHHHHHHHHHHhcCCCH---------HHHHHHHhChHHHHHHHHHHHHHHHcCCCcCCEEEECCEEecCCCCHHHHHHH
Confidence 455555544 44 56541 34455555555667788888888998875432222222 455 899999999
Q ss_pred HHHHHhCCCCc
Q 012112 236 LRRTVGAQPKH 246 (471)
Q Consensus 236 l~~~~~l~p~h 246 (471)
|+.+...+.+|
T Consensus 187 i~~~~~~~~~~ 197 (202)
T 3gha_A 187 IEKELKGKLEH 197 (202)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHhhhhh
Confidence 99998877665
No 407
>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*
Probab=24.74 E-value=1.8e+02 Score=28.39 Aligned_cols=119 Identities=8% Similarity=0.033 Sum_probs=63.6
Q ss_pred CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCC----HHHHHHHHHHHHHcCCCeeEeee-ec--------CC--CC
Q 012112 162 DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHG----LKEVYEAIEIVKLCGVENWSLDL-IS--------SL--PH 226 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t----~~~~~~ai~~~~~~G~~~v~~Dl-I~--------Gl--Pg 226 (471)
-.+.++.++++|++.|.+...... ....+ .+.+.+..+.+++.|+.-+.+.. .+ .+ |.
T Consensus 35 l~e~l~~aa~~G~d~VEl~~~~~~-------~~~~~~~~~~~~~~~l~~~l~~~GL~i~~~~~~~f~~p~~~~g~l~~~d 107 (394)
T 1xla_A 35 PVEAVHKLAELGAYGITFHDNDLI-------PFDATEAEREKILGDFNQALKDTGLKVPMVTTNLFSHPVFKDGGFTSND 107 (394)
T ss_dssp HHHHHHHHHHHTCCEEEEEHHHHS-------CTTCCHHHHHHHHHHHHHHHHHHCCBCCEEECCCSSSGGGTTCSTTCSS
T ss_pred HHHHHHHHHHcCCCEEEecCCccC-------cccCCchhhHHHHHHHHHHHHHcCCeEEEEecCccCCccccCCccCCCC
Confidence 467888888999998888652210 00011 23455666677888887333322 11 12 21
Q ss_pred C-----CHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q 012112 227 Q-----TPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGY 293 (471)
Q Consensus 227 q-----T~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy 293 (471)
. +.+.+++.++.+.+++.+.|.+.+ |..-+... .+.-.....+...+.+..+.+..++.|+
T Consensus 108 ~~~r~~~i~~~~~~i~~A~~LGa~~vvv~~-----G~~g~~~~-~~~~~~~~~~~~~e~L~~l~~~A~~~G~ 173 (394)
T 1xla_A 108 RSIRRFALAKVLHNIDLAAEMGAETFVMWG-----GREGSEYD-GSKDLAAALDRMREGVDTAAGYIKDKGY 173 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEEEECC-----TTCEESSG-GGCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEECC-----CCCccccc-cccCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1 235677888888899998777642 32100000 0000000123445566677777778884
No 408
>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ...
Probab=24.51 E-value=2.1e+02 Score=27.81 Aligned_cols=117 Identities=10% Similarity=0.131 Sum_probs=66.7
Q ss_pred CHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeeEeee-ec--------CC--CCC-
Q 012112 162 DARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAH--GLKEVYEAIEIVKLCGVENWSLDL-IS--------SL--PHQ- 227 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~--t~~~~~~ai~~~~~~G~~~v~~Dl-I~--------Gl--Pgq- 227 (471)
-.+.++.++++|++.|.+......+ .+... ..+++.+..+.+++.|+.-+++.. .+ ++ |..
T Consensus 35 ~~e~l~~aa~~G~~~VEl~~~~~~p-----~~~~~~~~~~~~~~l~~~l~~~GL~i~~~~~~~~~~p~~~~g~l~~~d~~ 109 (386)
T 1muw_A 35 PVETVQRLAELGAHGVTFHDDDLIP-----FGSSDTERESHIKRFRQALDATGMTVPMATTNLFTHPVFKDGGFTANDRD 109 (386)
T ss_dssp HHHHHHHHHHHTCCEEEEEHHHHSC-----TTCCHHHHHHHHHHHHHHHHHHTCBCCEEECCCSSSGGGTTCSTTCSSHH
T ss_pred HHHHHHHHHHcCCCEEEeeCCCCCc-----ccCcccccHHHHHHHHHHHHHhCCeEEEEecccccccccccCCCCCCCHH
Confidence 4688999999999999886532110 00000 034566666778888987333322 11 12 221
Q ss_pred ----CHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCH----HHHHHHHHHHHHHHHHCCC
Q 012112 228 ----TPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTE----TQSANFYRMASSMLSSAGY 293 (471)
Q Consensus 228 ----T~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~----~~~~~~~~~~~~~L~~~Gy 293 (471)
+.+.+++.++.+.+++.+.|.+.+ |..-+. . .+. .+. +...+.+..+.+..++.||
T Consensus 110 ~r~~~i~~~~~~i~~A~~LGa~~vvv~~-----g~~~~~-~-~~~---~~~~~~~~~~~e~L~~l~~~A~~~G~ 173 (386)
T 1muw_A 110 VRRYALRKTIRNIDLAVELGAKTYVAWG-----GREGAE-S-GAA---KDVRVALDRMKEAFDLLGEYVTSQGY 173 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEEECC-----TTCEES-S-TTS---CCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEECC-----CCCccc-c-ccc---CCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 136778888899999999877643 211000 0 000 111 3445667777788888884
No 409
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens}
Probab=24.38 E-value=75 Score=32.37 Aligned_cols=50 Identities=4% Similarity=-0.051 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCcEEE--EEecCCCCCHHHHHHHHHCCCCEEEEccCCCCH
Q 012112 128 VPPRFVSSILDTLTDKFGLSLDAEIS--MEMDPGTFDARKMEELMDLGVNRVSLGVQAFQD 186 (471)
Q Consensus 128 l~~~~l~~ll~~l~~~~~l~~~~eit--iE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d 186 (471)
++.+.+.+=++.+++.++ ..++. +-+|+ ..+.++.+.+.| ..+.+-|..+
T Consensus 53 iDl~~l~~n~~~l~~~~~---~~~i~yavKAn~---~~~v~~~l~~~G---~g~dvaS~~E 104 (471)
T 2oo0_A 53 ADLGDILKKHLRWLKALP---RVTPFYAVKCND---SKAIVKTLAATG---TGFDCASKTE 104 (471)
T ss_dssp EEHHHHHHHHHHHHHHCT---TEEEEEEGGGCC---CHHHHHHHHHHT---CEEEECSHHH
T ss_pred EEHHHHHHHHHHHHHhCC---CCeEEEEEeeCC---CHHHHHHHHHcC---CcEEEeCHHH
Confidence 577888888888888774 33444 33465 799999999999 3566666544
No 410
>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A*
Probab=24.38 E-value=43 Score=35.57 Aligned_cols=76 Identities=14% Similarity=0.154 Sum_probs=52.5
Q ss_pred EEEEecCCCC------CHHHHHHHHHCCCCEEEEc-cCCCC---------HHHHHHcCCC-CCHHHHHHHHHHHHHcCCC
Q 012112 152 ISMEMDPGTF------DARKMEELMDLGVNRVSLG-VQAFQ---------DELLKSCGRA-HGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 152 itiE~~P~~l------~~e~l~~l~~~GvnrvsiG-vQS~~---------d~~L~~l~R~-~t~~~~~~ai~~~~~~G~~ 214 (471)
+-.+++|+++ =.++|..|+++||+.|-|. +.-.. ..-...+... .|.+++.+.++.+++.|++
T Consensus 99 viY~~~~~~f~Gdl~gi~~~LdyL~~LGv~~I~L~Pi~~~~~~~~~~GY~v~dy~~vdp~~Gt~~d~~~Lv~~ah~~GI~ 178 (628)
T 1g5a_A 99 VGGVCYVDLFAGDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGIS 178 (628)
T ss_dssp CEEEECHHHHHSSHHHHHTTHHHHHHHTCSEEEECCCBCCCSSCSTTTTSCSCSSSBCTTTCCHHHHHHHHHHHHHTTCE
T ss_pred EEEEEchhhhCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCcCCcccCCcCccCCCHHHHHHHHHHHHHCCCE
Confidence 4566776543 1367899999999999874 22111 1111233333 3789999999999999998
Q ss_pred eeEeeeecCCCCCC
Q 012112 215 NWSLDLISSLPHQT 228 (471)
Q Consensus 215 ~v~~DlI~GlPgqT 228 (471)
|-+|++++.-+..
T Consensus 179 -VilD~V~NH~s~~ 191 (628)
T 1g5a_A 179 -AVVDFIFNHTSNE 191 (628)
T ss_dssp -EEEEECCSEEETT
T ss_pred -EEEEEecCccccc
Confidence 9999999875543
No 411
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=24.34 E-value=1.2e+02 Score=29.46 Aligned_cols=53 Identities=13% Similarity=0.330 Sum_probs=39.6
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEcc
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGV 181 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGv 181 (471)
++.|-+.- ++++.+.+..+.++. .+.+|+. +.++.+.++.+.+.|++.||+|-
T Consensus 252 aD~I~LDn-----~~~~~l~~av~~l~~--------~v~ieaS-GGIt~~~I~~~a~tGVD~isvGa 304 (320)
T 3paj_A 252 ADIIMLDN-----FSLEMMREAVKINAG--------RAALENS-GNITLDNLKECAETGVDYISVGA 304 (320)
T ss_dssp CSEEEEES-----CCHHHHHHHHHHHTT--------SSEEEEE-SSCCHHHHHHHHTTTCSEEECTH
T ss_pred CCEEEECC-----CCHHHHHHHHHHhCC--------CCeEEEE-CCCCHHHHHHHHHcCCCEEEECc
Confidence 56666643 366788877776542 3556665 46999999999999999999985
No 412
>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*
Probab=24.30 E-value=5e+02 Score=25.26 Aligned_cols=111 Identities=12% Similarity=0.038 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCH----HHHHHHHHCCCCEEEEccCCCCHHHHHHcC-CCCC------
Q 012112 129 PPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDA----RKMEELMDLGVNRVSLGVQAFQDELLKSCG-RAHG------ 197 (471)
Q Consensus 129 ~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~----e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~-R~~t------ 197 (471)
+++.-.+.++++++.++ ++..+.+.+|-. .+. +.++.|.+.|+..|.=.+...|-+.++.+. +..+
T Consensus 177 ~~~~d~~~v~avR~a~g--~d~~l~vDan~~-~~~~~A~~~~~~l~~~~i~~iEqP~~~~d~~~~~~l~~~~~~iPIa~d 253 (389)
T 3ozy_A 177 APRKDAANLRAMRQRVG--ADVEILVDANQS-LGRHDALAMLRILDEAGCYWFEEPLSIDDIEGHRILRAQGTPVRIATG 253 (389)
T ss_dssp CHHHHHHHHHHHHHHHC--TTSEEEEECTTC-CCHHHHHHHHHHHHHTTCSEEESCSCTTCHHHHHHHHTTCCSSEEEEC
T ss_pred CHHHHHHHHHHHHHHcC--CCceEEEECCCC-cCHHHHHHHHHHHHhcCCCEEECCCCcccHHHHHHHHhcCCCCCEEeC
Confidence 56666777889998875 567899988853 443 456778889999998666665666677776 4321
Q ss_pred --HHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCC
Q 012112 198 --LKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPK 245 (471)
Q Consensus 198 --~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~ 245 (471)
.....++.+.++.-..+-|++|+.. --....+.+..+.+.+.++.
T Consensus 254 E~i~~~~~~~~~i~~~~~d~v~ik~~~---~GGit~~~~ia~~A~~~gi~ 300 (389)
T 3ozy_A 254 ENLYTRNAFNDYIRNDAIDVLQADASR---AGGITEALAISASAASAHLA 300 (389)
T ss_dssp TTCCHHHHHHHHHHTTCCSEECCCTTT---SSCHHHHHHHHHHHHHTTCE
T ss_pred CCCCCHHHHHHHHHcCCCCEEEeCccc---cCCHHHHHHHHHHHHHcCCE
Confidence 1223333344444456666666643 01357777788888887753
No 413
>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A*
Probab=24.23 E-value=51 Score=35.37 Aligned_cols=39 Identities=10% Similarity=0.101 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHH
Q 012112 196 HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEES 235 (471)
Q Consensus 196 ~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~ 235 (471)
.+.+++.+.++.+++.|+. |-+|+++..=+..-.-+.+.
T Consensus 104 Gt~~d~~~lv~~~h~~gi~-vi~D~V~NH~~~~~~wf~~~ 142 (669)
T 3k8k_A 104 GTESDFDRLVTEAHNRGIK-IYLDYVMNHTGTAHPWFTEA 142 (669)
T ss_dssp CCHHHHHHHHHHHHHTTCE-EEEEECCSEEETTSHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCE-EEEEECcccCCCcCHHHHHH
Confidence 4899999999999999998 99999998755443334443
No 414
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A*
Probab=24.18 E-value=1.1e+02 Score=30.57 Aligned_cols=97 Identities=15% Similarity=0.155 Sum_probs=0.0
Q ss_pred CCC-CCCCHHHHHHHHHHHHHHcCCCCCcEEE--EEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHH
Q 012112 123 GTP-SLVPPRFVSSILDTLTDKFGLSLDAEIS--MEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLK 199 (471)
Q Consensus 123 GTp-s~l~~~~l~~ll~~l~~~~~l~~~~eit--iE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~ 199 (471)
||| -+++.+.+.+=++.+++.++ ..++. +-+|+ ..+.++.+.+.| ..+.+-|..+
T Consensus 37 ~tP~~vidl~~l~~n~~~~~~~~~---~~~~~~avKAn~---~~~v~~~l~~~G---~g~~vas~~E------------- 94 (425)
T 1f3t_A 37 GDPFFVADLGDIVRKHETWKKCLP---RVTPFYAVKCND---DWRVLGTLAALG---TGFDCASNTE------------- 94 (425)
T ss_dssp CCCEEEEEHHHHHHHHHHHHHHCT---TEEEEEEGGGCC---CHHHHHHHHHTT---CEEEECSHHH-------------
T ss_pred CCcEEEEeHHHHHHHHHHHHHhCC---CCeEEEEeeeCC---CHHHHHHHHHcC---CcEEEeCHHH-------------
Q ss_pred HHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEec
Q 012112 200 EVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYDL 252 (471)
Q Consensus 200 ~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~l 252 (471)
+..++++|++ .-+++++-|+-+.++ ++.+.+.++.++.+.++
T Consensus 95 -----~~~~~~~G~~--~~~iv~~g~~k~~~~----l~~a~~~gv~~~~vds~ 136 (425)
T 1f3t_A 95 -----IQRVRGIGVP--PEKIIYANPCKQISH----IRYARDSGVDVMTFDCV 136 (425)
T ss_dssp -----HHHHHHTTCC--GGGEEECCSSCCHHH----HHHHHHTTCCEEEECSH
T ss_pred -----HHHHHHcCCC--hhhEEEcCCCCCHHH----HHHHHHCCCCEEEeCCH
No 415
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=24.12 E-value=4.4e+02 Score=24.53 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHcCCC
Q 012112 199 KEVYEAIEIVKLCGVE 214 (471)
Q Consensus 199 ~~~~~ai~~~~~~G~~ 214 (471)
++..+..+.+.++|.+
T Consensus 82 ~~ai~la~~a~~~Gad 97 (289)
T 2yxg_A 82 EEAIELSVFAEDVGAD 97 (289)
T ss_dssp HHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhcCCC
Confidence 3444444455555554
No 416
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=24.03 E-value=4.2e+02 Score=25.11 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHCCCce
Q 012112 275 TQSANFYRMASSMLSSAGYRH 295 (471)
Q Consensus 275 ~~~~~~~~~~~~~L~~~Gy~~ 295 (471)
++..+.+....+.+.++|...
T Consensus 178 ~ev~~~l~~~i~~a~~~GI~~ 198 (297)
T 1tx2_A 178 ADMIADLYDSIKIAKDAGVRD 198 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHHHHHcCCCh
Confidence 455667777788888999873
No 417
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=24.01 E-value=1.1e+02 Score=29.09 Aligned_cols=56 Identities=11% Similarity=0.238 Sum_probs=43.2
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEcc
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGV 181 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGv 181 (471)
++.|.+.- ++++.+.+.++.++..+. .+.+|+. +.++.+.++.+++.|++.||+|-
T Consensus 215 aD~I~LDn-----~~~~~~~~~v~~l~~~~~-----~v~ieaS-GGIt~~~i~~~a~tGVD~isvG~ 270 (284)
T 1qpo_A 215 PELILLDN-----FAVWQTQTAVQRRDSRAP-----TVMLESS-GGLSLQTAATYAETGVDYLAVGA 270 (284)
T ss_dssp CSEEEEET-----CCHHHHHHHHHHHHHHCT-----TCEEEEE-SSCCTTTHHHHHHTTCSEEECGG
T ss_pred CCEEEECC-----CCHHHHHHHHHHhhccCC-----CeEEEEE-CCCCHHHHHHHHhcCCCEEEECH
Confidence 56666653 477889999888886531 2456665 46899999999999999999996
No 418
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A
Probab=24.00 E-value=30 Score=37.13 Aligned_cols=28 Identities=7% Similarity=0.154 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeeEeeeecCC
Q 012112 196 HGLKEVYEAIEIVKLCGVENWSLDLISSL 224 (471)
Q Consensus 196 ~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl 224 (471)
-+.+++.+.++.+++.|++ |-+|+++..
T Consensus 114 Gt~~dfk~Lv~~aH~~Gik-VilD~V~NH 141 (683)
T 3bmv_A 114 GSFTDFQNLINTAHAHNIK-VIIDFAPNH 141 (683)
T ss_dssp CCHHHHHHHHHHHHHTTCE-EEEEECTTE
T ss_pred CCHHHHHHHHHHHHHCCCE-EEEEEcccc
Confidence 4799999999999999998 999999975
No 419
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=23.89 E-value=1.3e+02 Score=30.24 Aligned_cols=115 Identities=10% Similarity=0.082 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe-cCCCC-------C-
Q 012112 92 SNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEM-DPGTF-------D- 162 (471)
Q Consensus 92 ~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~-~P~~l-------~- 162 (471)
...+..+++++...-.. .....+-+. ..|..++++.++.+ ++. ++ ...++.++. ++..+ +
T Consensus 120 ~~~l~~ll~~i~~~~~~----~~~~eitie-~~p~~l~~e~l~~L----~~~-G~-~rislGvQS~~~~~l~~i~R~~~~ 188 (457)
T 1olt_A 120 KAQISRLMKLLRENFQF----NADAEISIE-VDPREIELDVLDHL----RAE-GF-NRLSMGVQDFNKEVQRLVNREQDE 188 (457)
T ss_dssp HHHHHHHHHHHHHHSCE----EEEEEEEEE-ECSSSCCTHHHHHH----HHT-TC-CEEEEEEECCCHHHHHHHTCCCCH
T ss_pred HHHHHHHHHHHHHhCCC----CCCcEEEEE-EccCcCCHHHHHHH----HHc-CC-CEEEEeeccCCHHHHHHhCCCCCH
Confidence 34667777777653110 011233442 36777776655443 332 32 234555553 22211 1
Q ss_pred ---HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCC-CCCHHHHHHHHHHHHHcCCCeeEeeeecCCCC
Q 012112 163 ---ARKMEELMDLGVNRVSLGVQAFQDELLKSCGR-AHGLKEVYEAIEIVKLCGVENWSLDLISSLPH 226 (471)
Q Consensus 163 ---~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R-~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg 226 (471)
.+.++.++++|+..|++.+= +|- +.|.+++.+.++.+.+.|++.|++.-....||
T Consensus 189 ~~~~~ai~~~r~~G~~~v~~dlI---------~GlPget~e~~~~tl~~~~~l~~~~i~~y~l~~~p~ 247 (457)
T 1olt_A 189 EFIFALLNHAREIGFTSTNIDLI---------YGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPT 247 (457)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEEE---------ESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTT
T ss_pred HHHHHHHHHHHHcCCCcEEEEEE---------cCCCCCCHHHHHHHHHHHHhcCcCEEEeecCcCCcC
Confidence 24566677778765554431 122 45789999999999999999999887776776
No 420
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=23.81 E-value=36 Score=36.15 Aligned_cols=62 Identities=23% Similarity=0.224 Sum_probs=42.6
Q ss_pred HHHHHHHHCCCCEEEEc-cCCCC--------HHHHHHcCCC-CCHHHHHHHHHHHHHcCCCeeEeeeecCCCC
Q 012112 164 RKMEELMDLGVNRVSLG-VQAFQ--------DELLKSCGRA-HGLKEVYEAIEIVKLCGVENWSLDLISSLPH 226 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiG-vQS~~--------d~~L~~l~R~-~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg 226 (471)
++|..|+++|||.|.|. ++.+. ..-...+... -+.+++.+.|+.+++.|+. |-+|++++.-+
T Consensus 158 ~~L~yl~~lGv~~v~l~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~~~~~lv~~~H~~Gi~-VilD~V~NH~~ 229 (618)
T 3m07_A 158 AKLPYLAELGVTVIEVMPVAQFGGERGWGYDGVLLYAPHSAYGTPDDFKAFIDAAHGYGLS-VVLDIVLNHFG 229 (618)
T ss_dssp TTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECTTTCCHHHHHHHHHHHHHTTCE-EEEEECCSCCC
T ss_pred HHHHHHHHcCCCEEEeCChhccCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCE-EEEeecCccCC
Confidence 56788888888888664 21111 1111122222 3789999999999999998 99999998644
No 421
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Probab=23.75 E-value=32 Score=36.41 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=42.5
Q ss_pred HHHHHHHHCCCCEEEEc-cCCCC--------HHHHHHcCCC-CCHHHHHHHHHHHHHcCCCeeEeeeecCCCC
Q 012112 164 RKMEELMDLGVNRVSLG-VQAFQ--------DELLKSCGRA-HGLKEVYEAIEIVKLCGVENWSLDLISSLPH 226 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiG-vQS~~--------d~~L~~l~R~-~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg 226 (471)
++|..|+++|||.|-|- |..+. ..-...+... .+.+++.+.|+.+++.|+. |-+|++++.=+
T Consensus 148 ~~L~yl~~lGv~~I~L~Pi~~~~~~~~wGY~~~~y~~~~~~~Gt~~d~~~lv~~~H~~Gi~-VilD~V~NH~~ 219 (602)
T 2bhu_A 148 EKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAPYGRPEDLMALVDAAHRLGLG-VFLDVVYNHFG 219 (602)
T ss_dssp HTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECGGGCCHHHHHHHHHHHHHTTCE-EEEEECCSCCC
T ss_pred HHHHHHHHcCCCEEEECChhhccCCCCCCcccccCcccCcCCCCHHHHHHHHHHHHHCCCE-EEEEecccccc
Confidence 67888889999988763 22111 1001112221 3689999999999999998 99999987643
No 422
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=23.58 E-value=2.6e+02 Score=25.62 Aligned_cols=125 Identities=16% Similarity=0.130 Sum_probs=68.4
Q ss_pred EecCCC-CCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCe-------------eEeee
Q 012112 155 EMDPGT-FDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVEN-------------WSLDL 220 (471)
Q Consensus 155 E~~P~~-l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~-------------v~~Dl 220 (471)
-..|+. .+.+.++.|.++|.+-+-+|+ | .+.+.+++.+.++.+|+..+.- +..-+
T Consensus 14 ~gDP~~~~t~~~~~~l~~~GaD~ielG~-S----------~Gvt~~~~~~~v~~ir~~~~Pivlm~y~~n~i~~G~dg~i 82 (240)
T 1viz_A 14 KLDPNKDLPDEQLEILCESGTDAVIIGG-S----------DGVTEDNVLRMMSKVRRFLVPCVLEVSAIEAIVPGFDLYF 82 (240)
T ss_dssp EECTTSCCCHHHHHHHHTSCCSEEEECC---------------CHHHHHHHHHHHTTSSSCEEEECSCGGGCCSCCSEEE
T ss_pred eeCCCccccHHHHHHHHHcCCCEEEECC-C----------CCCCHHHHHHHHHHhhCcCCCEEEecCccccccCCCCEEE
Confidence 357875 688999999999999999999 2 5677888888898888743331 11223
Q ss_pred ecCCCCCCHHHH--HHHHHHHHhCC-----CCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q 012112 221 ISSLPHQTPQMW--EESLRRTVGAQ-----PKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGY 293 (471)
Q Consensus 221 I~GlPgqT~e~~--~~~l~~~~~l~-----p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy 293 (471)
+.-+|.+..+.| -.....+.+.+ .+.|.---+.+.|+|...+.. .+... .+.+ ....|..+-+ +...||
T Consensus 83 iPdLp~ee~~~~~~g~~~~a~~~~g~~~~~l~~i~~gy~l~~P~~~~~rl~-~~d~~-~~~~-~~~~~a~~g~-~~~~~~ 158 (240)
T 1viz_A 83 IPSVLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALT-EADAD-LNMD-DIVAYARVSE-LLQLPI 158 (240)
T ss_dssp EEEETTBSSGGGTTHHHHHHHHHCHHHHHHSCEEEEEEEECCTTSHHHHHT-TBCCC-CCHH-HHHHHHHHHH-HTTCSE
T ss_pred EcccCcccChhhhcchhHHHHHHcCCCCcceeeeecccEEECCCCceEEee-ccCCC-CCHH-HHHHHHHhCc-ccCCCE
Confidence 333455544555 22233455555 554442223344555544332 23222 2223 4444544443 444555
Q ss_pred c
Q 012112 294 R 294 (471)
Q Consensus 294 ~ 294 (471)
.
T Consensus 159 V 159 (240)
T 1viz_A 159 F 159 (240)
T ss_dssp E
T ss_pred E
Confidence 5
No 423
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=23.33 E-value=4.8e+02 Score=24.66 Aligned_cols=50 Identities=12% Similarity=-0.028 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCC-CcEE
Q 012112 197 GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQP-KHVS 248 (471)
Q Consensus 197 t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p-~his 248 (471)
|.++..+.++.+.+.--. .+-+|.|.-+.+.++..+..+.+.+++. +.+.
T Consensus 58 s~~Er~~v~~~~~~~~~g--rvpViaGvg~~~t~~ai~la~~A~~~Ga~davl 108 (311)
T 3h5d_A 58 THDEELELFAAVQKVVNG--RVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGL 108 (311)
T ss_dssp CHHHHHHHHHHHHHHSCS--SSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEE
T ss_pred CHHHHHHHHHHHHHHhCC--CCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEE
Confidence 344444444444443111 1334445544444444444555555543 4443
No 424
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}
Probab=23.31 E-value=31 Score=37.11 Aligned_cols=72 Identities=14% Similarity=0.234 Sum_probs=49.8
Q ss_pred HHHHHHHHHCCCCEEEEcc--CCCCH-----HHHHHcCCC-CCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHH
Q 012112 163 ARKMEELMDLGVNRVSLGV--QAFQD-----ELLKSCGRA-HGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEE 234 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGv--QS~~d-----~~L~~l~R~-~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~ 234 (471)
.++|..|+++||+-|-|.. +|-+. .-...+... -|.+++.+.++.|++.|++ |-+|+++..-+..-.-|.+
T Consensus 268 ~~kLdyLk~LGvt~IwL~Pi~~s~~~~GYd~~Dy~~idp~~Gt~~df~~Lv~~aH~~Gik-VilD~V~NHts~~~~~f~~ 346 (696)
T 4aee_A 268 MKHIDHLEDLGVETIYLTPIFSSTSYHRYDTIDYKSIDKYLGTMEDFEKLVQVLHSRKIK-IVLDITMHHTNPCNELFVK 346 (696)
T ss_dssp HTTHHHHHHHTCCEEEECCCEEESSSSCCSEEEEEEECGGGCCHHHHHHHHHHHHHTTCE-EEEEECSSEECTTSHHHHH
T ss_pred HHHhHHHHHcCCCEEEECCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCE-EEEeccccccCccCHHHHH
Confidence 4788999999999987752 32211 111122222 3789999999999999998 9999999876655444444
Q ss_pred H
Q 012112 235 S 235 (471)
Q Consensus 235 ~ 235 (471)
.
T Consensus 347 ~ 347 (696)
T 4aee_A 347 A 347 (696)
T ss_dssp H
T ss_pred H
Confidence 3
No 425
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=23.26 E-value=2.3e+02 Score=21.17 Aligned_cols=44 Identities=11% Similarity=0.060 Sum_probs=35.4
Q ss_pred HHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecC
Q 012112 376 MLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDE 420 (471)
Q Consensus 376 ~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~ 420 (471)
+..|.-.+..-...+++++|.+=. .....|-.|++.|.+...++
T Consensus 21 i~~L~~~~~~Ta~~IAkkLg~sK~-~vNr~LY~L~kkG~V~~~~~ 64 (75)
T 1sfu_A 21 VLSLNTNDYTTAISLSNRLKINKK-KINQQLYKLQKEDTVKMVPS 64 (75)
T ss_dssp HHTSCTTCEECHHHHHHHTTCCHH-HHHHHHHHHHHTTSEEEECC
T ss_pred HHhCCCCcchHHHHHHHHHCCCHH-HHHHHHHHHHHCCCEecCCC
Confidence 557776666788889999998854 47889999999999988764
No 426
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=23.26 E-value=1.5e+02 Score=27.72 Aligned_cols=83 Identities=11% Similarity=-0.082 Sum_probs=50.2
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeee--------cCCCCC-----CH
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLI--------SSLPHQ-----TP 229 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI--------~GlPgq-----T~ 229 (471)
+..++.++++|++.|.+.+...++..-. ..+.+++.+..+.+++.|+.-.++... ++-|.. +.
T Consensus 38 ~~~~~~a~~~G~~~vEl~~~~~~~~~~~----~~~~~~~~~~~~~l~~~Gl~i~~~~~~~~~~~~~~l~~~d~~~r~~~~ 113 (316)
T 3qxb_A 38 RLAGLVRDDLGLEYVQYTYDLTDPWWPD----IERDRRAIAYAKAFRKAGLTIESTFGGLASYTYNHFLAPTLELQSLGY 113 (316)
T ss_dssp HHHHHHHHTSCCCEEEEETTTSCTTSCH----HHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTSCBTTCSSHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEeeccccCccccc----cchhhHHHHHHHHHHHcCCeEEEeeccccccccccCCCCCHHHHHHHH
Confidence 3446777899999999988754431000 001235566667788899973222110 111221 23
Q ss_pred HHHHHHHHHHHhCCCCcEEE
Q 012112 230 QMWEESLRRTVGAQPKHVSV 249 (471)
Q Consensus 230 e~~~~~l~~~~~l~p~his~ 249 (471)
+.+++.++.+.+++.+.|.+
T Consensus 114 ~~~~~~i~~A~~lGa~~v~~ 133 (316)
T 3qxb_A 114 QHLKRAIDMTAAMEVPATGM 133 (316)
T ss_dssp HHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEe
Confidence 56788899999999998753
No 427
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=23.25 E-value=1.4e+02 Score=24.59 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=34.6
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEE
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVIC 417 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~ 417 (471)
.++..|.....+...++++++|.+.. .....+++|++.|++..
T Consensus 11 ~iL~~L~~~~~~s~~ela~~lg~s~~-tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 11 ILVRELAADGRATLSELATRAGLSVS-AVQSRVRRLESRGVVQG 53 (150)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHH-HHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHH-HHHHHHHHHHHCCCEEE
Confidence 44555566677999999999999864 46788999999999964
No 428
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*
Probab=23.22 E-value=67 Score=34.46 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=43.4
Q ss_pred EEEEEecCCCCC----HHHHHHHHHCCCCEEEEcc------CCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeee
Q 012112 151 EISMEMDPGTFD----ARKMEELMDLGVNRVSLGV------QAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDL 220 (471)
Q Consensus 151 eitiE~~P~~l~----~e~l~~l~~~GvnrvsiGv------QS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~Dl 220 (471)
-+...-+|+... ++.++.|+++|+|-|.+++ |--. | ..+.+.+.+.++.+++.|+. |-+.+
T Consensus 10 ~~G~~y~pe~w~~~~~~~Dl~~mk~~G~n~vr~~if~W~~~eP~~-------g-~~~f~~ld~~i~~~~~~Gi~-vil~~ 80 (675)
T 3tty_A 10 WYGGDYNPEQWDKATMEEDMRMFNLAGIDVATVNVFSWAKIQRDE-------V-SYDFTWLDDIIERLTKENIY-LCLAT 80 (675)
T ss_dssp EEEEECCGGGSCHHHHHHHHHHHHHHTCCEEEECSSCHHHHBSSS-------S-CBCCHHHHHHHHHHHHTTCE-EEEEC
T ss_pred eEeeeCChhhCCHHHHHHHHHHHHHcCCCEEEEeeechhhhCCcC-------C-ccCHHHHHHHHHHHHHCCCE-EEEeC
Confidence 344555676654 4778889999999999986 3211 1 23567888999999999997 55544
No 429
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=23.17 E-value=67 Score=32.45 Aligned_cols=50 Identities=8% Similarity=0.044 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCcEEE--EEecCCCCCHHHHHHHHHCCCCEEEEccCCCCH
Q 012112 128 VPPRFVSSILDTLTDKFGLSLDAEIS--MEMDPGTFDARKMEELMDLGVNRVSLGVQAFQD 186 (471)
Q Consensus 128 l~~~~l~~ll~~l~~~~~l~~~~eit--iE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d 186 (471)
++.+.+.+=++.+++.++ +..+. +-+|+ +.+.++.+.+.|. .+.+-|..+
T Consensus 43 id~~~l~~n~~~~~~~~~---~~~i~yavKAn~---~~~v~~~l~~~G~---g~~vaS~~E 94 (448)
T 3btn_A 43 GDLGKIVKKHSQWQTVVA---QIKPFYTVKCNS---TPAVLEILAALGT---GFACSSKNE 94 (448)
T ss_dssp EEHHHHHHHHHHHHHHCT---TEEEEEEGGGCC---CHHHHHHHHHHTC---EEEESSHHH
T ss_pred EeHHHHHHHHHHHHHhCC---CCeEEEEeeeCC---CHHHHHHHHHcCC---cEEEeCHHH
Confidence 467788888888888774 33444 33465 7999999999993 666767544
No 430
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}
Probab=23.15 E-value=54 Score=35.57 Aligned_cols=75 Identities=16% Similarity=0.223 Sum_probs=51.8
Q ss_pred EEEEecCCCCC--------HHHH-HHHHHCCCCEEEEc-cCCC-CHH-------HHHHcC-CCCCHHHHHHHHHHHHHcC
Q 012112 152 ISMEMDPGTFD--------ARKM-EELMDLGVNRVSLG-VQAF-QDE-------LLKSCG-RAHGLKEVYEAIEIVKLCG 212 (471)
Q Consensus 152 itiE~~P~~l~--------~e~l-~~l~~~GvnrvsiG-vQS~-~d~-------~L~~l~-R~~t~~~~~~ai~~~~~~G 212 (471)
+.-|+++.+.+ .+.+ ..|+++|+|.|-|- +... .+. -...+. |--+.+++.+.|+.+++.|
T Consensus 247 ~IYE~h~~s~~~~G~~~~l~~~l~~yLk~lG~t~I~L~Pi~e~~~~~~wGY~~~~y~a~~~~yGt~~dfk~lV~~~H~~G 326 (722)
T 3k1d_A 247 STYEVHLGSWRPGLSYRQLARELTDYIVDQGFTHVELLPVAEHPFAGSWGYQVTSYYAPTSRFGTPDDFRALVDALHQAG 326 (722)
T ss_dssp EEEEECTTTSSTTCCHHHHHHHHHHHHHHHTCSEEEESCCEECSCGGGTTCSCSEEEEECGGGCCHHHHHHHHHHHHHTT
T ss_pred EEEEEehhhccCCCCHHHHHHHHHHHHHHcCCCeEEECCcccCCCCCCCCCCcccCcCccccCCCHHHHHHHHHHHHHcC
Confidence 55688988765 3454 89999999999764 2211 110 000111 2236899999999999999
Q ss_pred CCeeEeeeecCCCCC
Q 012112 213 VENWSLDLISSLPHQ 227 (471)
Q Consensus 213 ~~~v~~DlI~GlPgq 227 (471)
+. |-+|++++.-+.
T Consensus 327 I~-VilD~V~NH~~~ 340 (722)
T 3k1d_A 327 IG-VIVDWVPAHFPK 340 (722)
T ss_dssp CE-EEEEECTTCCCC
T ss_pred CE-EEEEEEeeccCC
Confidence 98 999999887443
No 431
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=23.13 E-value=3.2e+02 Score=24.18 Aligned_cols=21 Identities=10% Similarity=-0.040 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhCCCCcEEEE
Q 012112 230 QMWEESLRRTVGAQPKHVSVY 250 (471)
Q Consensus 230 e~~~~~l~~~~~l~p~his~y 250 (471)
+.+++.++.+.+++++.|.+.
T Consensus 76 ~~~~~~i~~A~~lGa~~v~~~ 96 (254)
T 3ayv_A 76 RRLLFGLDRAAELGADRAVFH 96 (254)
T ss_dssp HHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEC
Confidence 456667777777777777654
No 432
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=23.10 E-value=63 Score=24.94 Aligned_cols=31 Identities=26% Similarity=0.238 Sum_probs=18.2
Q ss_pred CCeeEEEEcCCCCCC-CCHHHHHHHHHHHHHHcCC
Q 012112 113 PPLETVFFGGGTPSL-VPPRFVSSILDTLTDKFGL 146 (471)
Q Consensus 113 ~~v~~i~fGGGTps~-l~~~~l~~ll~~l~~~~~l 146 (471)
+.|-.|+||+|+.-. .+++++ .++|.+..++
T Consensus 54 ~tVP~I~i~Dg~~l~~~~~~el---~~~L~el~gL 85 (92)
T 2lqo_A 54 RTVPTVKFADGSTLTNPSADEV---KAKLVKIAGL 85 (92)
T ss_dssp SCSCEEEETTSCEEESCCHHHH---HHHHHHHHCC
T ss_pred CEeCEEEEeCCEEEeCCCHHHH---HHHHHHhcCC
Confidence 458889999887521 134444 4455555444
No 433
>1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A*
Probab=23.00 E-value=4.6e+02 Score=24.36 Aligned_cols=118 Identities=9% Similarity=0.098 Sum_probs=65.0
Q ss_pred CHHHHHHHHHCCCCEEEEccCCC---CHH----HHH-------HcC-CCCCHHHHHHHHHHHHHcCCCeeEeeeecCC--
Q 012112 162 DARKMEELMDLGVNRVSLGVQAF---QDE----LLK-------SCG-RAHGLKEVYEAIEIVKLCGVENWSLDLISSL-- 224 (471)
Q Consensus 162 ~~e~l~~l~~~GvnrvsiGvQS~---~d~----~L~-------~l~-R~~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl-- 224 (471)
.++.++.|+++|+|-|-+.+-+- .+. .++ .++ .....+.+.+.++.|++.|+. |-+|+.-+.
T Consensus 38 ~~~~l~~~k~~G~N~vR~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~i~~a~~~Gi~-vild~~~~w~~ 116 (344)
T 1qnr_A 38 VDSTFSHISSSGLKVVRVWGFNDVNTQPSPGQIWFQKLSATGSTINTGADGLQTLDYVVQSAEQHNLK-LIIPFVNNWSD 116 (344)
T ss_dssp HHHHHHHHHHTTCCEEECCCCCEESSCCSTTCCCSEECCTTCCEECCSTTTTHHHHHHHHHHHHHTCE-EEEESCBSSST
T ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCCCCCceeeeecCCCCcccccCHHHHHHHHHHHHHHHHCCCE-EEEEeccCccc
Confidence 35788899999999887743110 000 000 010 022467788999999999997 888885431
Q ss_pred CC-----------------CC---HHHHHHHHHHHHhC--CCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHH
Q 012112 225 PH-----------------QT---PQMWEESLRRTVGA--QPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYR 282 (471)
Q Consensus 225 Pg-----------------qT---~e~~~~~l~~~~~l--~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~ 282 (471)
+| .. .+.+.+-++.+++. +-+.|-.+.+.-||+..- .+.+...+.+.
T Consensus 117 ~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~p~v~~w~l~NEp~~~~-----------~~~~~~~~~~~ 185 (344)
T 1qnr_A 117 YGGINAYVNAFGGNATTWYTNTAAQTQYRKYVQAVVSRYANSTAIFAWELGNEPRCNG-----------CSTDVIVQWAT 185 (344)
T ss_dssp TSHHHHHHHHHCSCTTGGGGCHHHHHHHHHHHHHHHHHHTTCTTEEEEESCBSCCCTT-----------CCTHHHHHHHH
T ss_pred cCCHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHhCCCCcEEEEEcccCcccCC-----------CChHHHHHHHH
Confidence 11 11 23445555555432 222466677777775410 12234445555
Q ss_pred HHHHHHHHC
Q 012112 283 MASSMLSSA 291 (471)
Q Consensus 283 ~~~~~L~~~ 291 (471)
.+.+.+++.
T Consensus 186 ~~~~~ir~~ 194 (344)
T 1qnr_A 186 SVSQYVKSL 194 (344)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 555656553
No 434
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=22.98 E-value=3.9e+02 Score=25.71 Aligned_cols=53 Identities=9% Similarity=0.047 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 198 LKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 198 ~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
.+++.+..+.+.++|.+.+-+--=+=. .-|.+.+.+-.+.+.+.-.--|-+|.
T Consensus 112 t~eai~la~~A~~~Gadavlv~~P~Y~-~~s~~~l~~~f~~VA~a~~lPiilYn 164 (343)
T 2v9d_A 112 ARETIELSQHAQQAGADGIVVINPYYW-KVSEANLIRYFEQVADSVTLPVMLYN 164 (343)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCSSS-CCCHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCC-CCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 445555556666666654322111111 12556666666555543222244554
No 435
>3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* 4amc_A
Probab=22.93 E-value=47 Score=37.52 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=42.3
Q ss_pred HHHHHHHHCCCCEEEEccCCCCH-------H-------H--HH----HcC-CCCCHHHHHHHHHHHHHcCCCeeEeeeec
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQD-------E-------L--LK----SCG-RAHGLKEVYEAIEIVKLCGVENWSLDLIS 222 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d-------~-------~--L~----~l~-R~~t~~~~~~ai~~~~~~G~~~v~~DlI~ 222 (471)
++|..|+++||+.|-|-...-++ . + +- .+. +--+.+++.+.|+.++++||. |-+|+++
T Consensus 690 ~kldyLk~LGVtaIwL~Pi~~~~~~~~~~~~~~~~GYd~~d~~~~~~~i~~~~Gt~~efk~lV~alH~~GI~-VIlDvV~ 768 (1039)
T 3klk_A 690 QNADLFKSWGITTFELAPQYNSSKDGTFLDSIIDNGYAFTDRYDLGMSTPNKYGSDEDLRNALQALHKAGLQ-AIADWVP 768 (1039)
T ss_dssp HTHHHHHHTTCCEEECCCCSCBCCCCSSGGGTTTCSSSBSCTTCSSCSSCBTTBCHHHHHHHHHHHHHTTCE-EEEEECC
T ss_pred HHHHHHHHcCCCEEEECccccCCcccccccCcCCCCCCcccccccccCCCCCCCCHHHHHHHHHHHHHCCCE-EEEEEcc
Confidence 56778888888888775432221 0 0 00 111 223789999999999999998 9999998
Q ss_pred CCC
Q 012112 223 SLP 225 (471)
Q Consensus 223 GlP 225 (471)
..=
T Consensus 769 NHt 771 (1039)
T 3klk_A 769 DQI 771 (1039)
T ss_dssp SEE
T ss_pred CCc
Confidence 763
No 436
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=22.92 E-value=4.6e+02 Score=24.34 Aligned_cols=100 Identities=12% Similarity=0.090 Sum_probs=66.7
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhC
Q 012112 163 ARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGA 242 (471)
Q Consensus 163 ~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l 242 (471)
+.-++.|++.|++.|-+=. |+--...+++....+.+.+.|| .+.= - -|-+.+.+.+.++.+++.
T Consensus 171 etAiaml~dmG~~SvKffP----------M~Gl~~leEl~avAkAca~~g~-~lEP--T---GGIdl~Nf~~I~~i~l~a 234 (275)
T 3m6y_A 171 KTAIALVRDMGGNSLKYFP----------MKGLAHEEEYRAVAKACAEEGF-ALEP--T---GGIDKENFETIVRIALEA 234 (275)
T ss_dssp HHHHHHHHHHTCCEEEECC----------CTTTTTHHHHHHHHHHHHHHTC-EEEE--B---SSCCTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCeeeEee----------cCCcccHHHHHHHHHHHHHcCc-eECC--C---CCccHhHHHHHHHHHHHc
Confidence 4567788888887765411 3333457888888888888898 2322 1 255678888889999999
Q ss_pred CCCcE--EEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHH
Q 012112 243 QPKHV--SVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLS 289 (471)
Q Consensus 243 ~p~hi--s~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~ 289 (471)
+++.| .+|+-.+.+.|-.- ..++..+++....+.|.
T Consensus 235 Gv~~viPHIYsSIIDk~TG~T-----------rpedV~~ll~~~K~l~~ 272 (275)
T 3m6y_A 235 NVEQVIPHVYSSIIDKETGNT-----------KVEAVRELLAVVKKLVD 272 (275)
T ss_dssp TCSCBCCEECGGGBCTTTCCB-----------CHHHHHHHHHHHHHHHT
T ss_pred CCCeecccccceeccCCCCCC-----------CHHHHHHHHHHHHHHHh
Confidence 87654 45777777766432 24566777777777665
No 437
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=22.91 E-value=1.5e+02 Score=28.06 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEecccc
Q 012112 229 PQMWEESLRRTVGAQPKHVSVYDLQVE 255 (471)
Q Consensus 229 ~e~~~~~l~~~~~l~p~his~y~l~~~ 255 (471)
.+.+.+.+++|.++|+.++++|.++.+
T Consensus 85 ~~~l~~iv~~c~~lGI~~LTlYaFStE 111 (284)
T 2vg3_A 85 EAVVIDIACGAIELGIKWLSLYAFSTE 111 (284)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEEEETT
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCc
Confidence 377888999999999999999999765
No 438
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=22.76 E-value=1.6e+02 Score=27.53 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHhCCCCcEEEEeccccC
Q 012112 227 QTPQMWEESLRRTVGAQPKHVSVYDLQVEQ 256 (471)
Q Consensus 227 qT~e~~~~~l~~~~~l~p~his~y~l~~~p 256 (471)
+-.+.+.+.+++|.++++.++++|.++.+-
T Consensus 52 ~G~~~~~~iv~~c~~lGI~~lTlYaFStEN 81 (256)
T 4h8e_A 52 EGMQTIKKITRIASDIGVKYLTLYAFSTEN 81 (256)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEEEEETTG
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEEchhh
Confidence 345788899999999999999999998763
No 439
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=22.69 E-value=3.8e+02 Score=25.31 Aligned_cols=55 Identities=11% Similarity=-0.134 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHcCCCeeEeee-ecCC-CCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 197 GLKEVYEAIEIVKLCGVENWSLDL-ISSL-PHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 197 t~~~~~~ai~~~~~~G~~~v~~Dl-I~Gl-PgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
+.++..+..+.+.++|.+.+-+-- .|+. -.-|.+.+.+-.+.+.+.-.--|-+|.
T Consensus 88 ~t~~ai~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a~~lPiilYn 144 (309)
T 3fkr_A 88 STQVCAARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAIAIPIMVQD 144 (309)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 355666667777777776433211 1110 022567777766666553222255665
No 440
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=22.56 E-value=39 Score=34.47 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHH
Q 012112 197 GLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWE 233 (471)
Q Consensus 197 t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~ 233 (471)
|.+++.+.++.+++.|++ |-+|+++..-+..-.-+.
T Consensus 80 t~~d~~~Lv~~aH~~Gi~-VilD~V~NH~s~~~~~f~ 115 (488)
T 1wza_A 80 TLEDFHKLVEAAHQRGIK-VIIDLPINHTSERHPWFL 115 (488)
T ss_dssp CHHHHHHHHHHHHHTTCE-EEEECCCSBCCTTSHHHH
T ss_pred CHHHHHHHHHHHHHCCCE-EEEEeccccccCccHhhh
Confidence 789999999999999998 999999987665433333
No 441
>2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7
Probab=22.46 E-value=40 Score=34.04 Aligned_cols=92 Identities=12% Similarity=0.151 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCC---------HHHHH-----HHHHCCCC--EEEEccCCCCHHHH
Q 012112 126 SLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFD---------ARKME-----ELMDLGVN--RVSLGVQAFQDELL 189 (471)
Q Consensus 126 s~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~---------~e~l~-----~l~~~Gvn--rvsiGvQS~~d~~L 189 (471)
...+.+.++.++++..+ .+..+-+++.++.++ .+.+. ..+++|+. +|.++...+.+.--
T Consensus 20 n~~n~e~i~Ail~aAee-----~~sPVIi~~s~~~v~~~gGY~g~~~~~~~~~v~~~A~~~~vP~~~VaLHlDHg~~~~w 94 (420)
T 2fiq_A 20 CSAHPLVIEAALAFDRN-----STRKVLIEATSNQVNQFGGYTGMTPADFREFVFAIADKVGFARERIILGGDHLGPNCW 94 (420)
T ss_dssp CCCCHHHHHHHHHHTTT-----SCCCEEEEEETTTBSTTCTTTTBCHHHHHHHHHHHHHHHTCCGGGEEEEEEEESSGGG
T ss_pred ccCCHHHHHHHHHHHHH-----cCCCEEEEcChhhhhhccCCCCCCHHHHHHHHHHHHHHcCcCcceEEEECCCCCCccc
Confidence 34577888888887765 345789999887765 22222 22346888 59999998866422
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeec
Q 012112 190 KSCGRAHGLKEVYEAIEIVKLCGVENWSLDLIS 222 (471)
Q Consensus 190 ~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~ 222 (471)
+.+.-....+.+.+.+..+-++||++|-+|-=.
T Consensus 95 ~~~~~~~am~~a~e~i~~aI~aGFtSVMiD~S~ 127 (420)
T 2fiq_A 95 QQENVDAAMEKSVELVKAYVRAGFSKIHLDASM 127 (420)
T ss_dssp TTSBHHHHHHHHHHHHHHHHHTTCCEEEECCCS
T ss_pred cccchhhhhhhHHHHHHHHHHhCCCEEEECCCC
Confidence 211111112233355666778899999998654
No 442
>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, gluconeogenesis, glycolysis, pentose shunt; 1.60A {Bartonella henselae}
Probab=22.38 E-value=4.9e+02 Score=24.42 Aligned_cols=107 Identities=15% Similarity=0.136 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHH------
Q 012112 160 TFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWE------ 233 (471)
Q Consensus 160 ~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~------ 233 (471)
.++.+ .|++.||+.+-|| +.+-+...+ -+.+.+-+-++.+.++|+.- |+-+ |||.++-+
T Consensus 102 EIS~~---mLkd~G~~~VIiG----HSERR~~f~--Etde~V~~Kv~~Al~~GL~p-----IlCV-GEtleeRe~g~t~~ 166 (275)
T 3kxq_A 102 DISAF---MLKEAGASHVIIG----HSERRTVYQ--ESDAIVRAKVQAAWRAGLVA-----LICV-GETLEERKSNKVLD 166 (275)
T ss_dssp CCCHH---HHHHHTCSEEEES----CHHHHHHTC--CCHHHHHHHHHHHHHTTCEE-----EEEE-CCCHHHHHTTCHHH
T ss_pred cCCHH---HHHHcCCCEEEEC----chhhccccC--CCHHHHHHHHHHHHHCCCEE-----EEEe-CCCHHHHHCCCHHH
Confidence 35555 4556699999987 455554443 46778888899999999862 2222 78876553
Q ss_pred ---HHHHHHHhCCCC--c-EEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHC
Q 012112 234 ---ESLRRTVGAQPK--H-VSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSA 291 (471)
Q Consensus 234 ---~~l~~~~~l~p~--h-is~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~ 291 (471)
+-|+.++...++ . |-.| || .| .-|.-..++.++..++...+++.|.+.
T Consensus 167 vv~~Ql~~~l~~~~~~~~vVIAY----EP---VW---AIGTGktAt~e~aqevh~~IR~~l~~~ 220 (275)
T 3kxq_A 167 VLTRQLEGSLPDGATAENIIIAY----EP---VW---AVGTGNTATSADVAEVHAFIHHKMHSR 220 (275)
T ss_dssp HHHHHHHHHSCTTCCTTTEEEEE----CC---CC-----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcccCCEEEEE----CC---hh---hhcCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 334444332232 1 2222 33 11 123334567888999999999998863
No 443
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Probab=22.38 E-value=1.4e+02 Score=28.12 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=52.6
Q ss_pred HHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCC
Q 012112 95 IQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGV 174 (471)
Q Consensus 95 v~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~Gv 174 (471)
++..++....+.+. ..+.||+-+ .| +.+.++++.+.+. + .+.+-+.|..++. +.|+++|+
T Consensus 167 ~~~ai~Ra~ay~eA-----GAd~i~~e~-~~---~~~~~~~i~~~~~----~----P~n~~~~~~~~~~---~eL~~lGv 226 (275)
T 2ze3_A 167 LAETVRRGQAYADA-----GADGIFVPL-AL---QSQDIRALADALR----V----PLNVMAFPGSPVP---RALLDAGA 226 (275)
T ss_dssp HHHHHHHHHHHHHT-----TCSEEECTT-CC---CHHHHHHHHHHCS----S----CEEEECCTTSCCH---HHHHHTTC
T ss_pred HHHHHHHHHHHHHC-----CCCEEEECC-CC---CHHHHHHHHHhcC----C----CEEEecCCCCCCH---HHHHHcCC
Confidence 45555555555443 267788754 33 3567777666553 2 2333345656665 67888999
Q ss_pred CEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 012112 175 NRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCG 212 (471)
Q Consensus 175 nrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G 212 (471)
+++++|...+... ..-+.++.+.+++.|
T Consensus 227 ~~v~~~~~~~raa----------~~a~~~~~~~i~~~g 254 (275)
T 2ze3_A 227 ARVSFGQSLMLAT----------LGLVQRMAAELHAAE 254 (275)
T ss_dssp SEEECTTHHHHHH----------HHHHHHHHHHHHHHS
T ss_pred cEEEEChHHHHHH----------HHHHHHHHHHHHHhC
Confidence 9999998754221 233555566666666
No 444
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=22.37 E-value=1.3e+02 Score=24.80 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=35.3
Q ss_pred HHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEE
Q 012112 373 DVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVIC 417 (471)
Q Consensus 373 e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~ 417 (471)
..++..|....++...++++..|.+.. .....++.|.+.|++..
T Consensus 6 ~~il~~L~~~~~~~~~ela~~lg~s~~-tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 6 LRILKILQYNAKYSLDEIAREIRIPKA-TLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHTTCTTSCHHHHHHHHTSCHH-HHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHH-HHHHHHHHHHHCCcEEE
Confidence 345556666677999999999999854 46788999999999864
No 445
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=22.22 E-value=1.6e+02 Score=26.66 Aligned_cols=38 Identities=16% Similarity=0.052 Sum_probs=30.1
Q ss_pred CCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcc
Q 012112 384 GVDLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWR 422 (471)
Q Consensus 384 gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~ 422 (471)
-|...++.++||++-. .+.++|..|...|||+...+.+
T Consensus 51 ~L~e~~La~~lgVSRt-pVREAL~~L~~eGlv~~~~~~G 88 (239)
T 2hs5_A 51 RLSEPDICAALDVSRN-TVREAFQILIEDRLVAHELNRG 88 (239)
T ss_dssp EECHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEETTTE
T ss_pred EeCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEEEeCCCe
Confidence 3677788888888854 4788999999999999776443
No 446
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=22.16 E-value=2.4e+02 Score=26.36 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHH
Q 012112 160 TFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRT 239 (471)
Q Consensus 160 ~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~ 239 (471)
-+++..+...+++|.+.|.+|.-..++ ++..+.++.+++.|+. +-++. .|.++ ++.+
T Consensus 122 iid~~qv~~A~~~GAD~VlLi~a~l~~------------~~l~~l~~~a~~lGl~-~lvev------~t~ee----~~~A 178 (272)
T 3qja_A 122 VVQPYQIHEARAHGADMLLLIVAALEQ------------SVLVSMLDRTESLGMT-ALVEV------HTEQE----ADRA 178 (272)
T ss_dssp CCSHHHHHHHHHTTCSEEEEEGGGSCH------------HHHHHHHHHHHHTTCE-EEEEE------SSHHH----HHHH
T ss_pred ccCHHHHHHHHHcCCCEEEEecccCCH------------HHHHHHHHHHHHCCCc-EEEEc------CCHHH----HHHH
Confidence 357777999999999999999887764 3455567777888876 32332 35554 4555
Q ss_pred HhCCCCcEEEEe
Q 012112 240 VGAQPKHVSVYD 251 (471)
Q Consensus 240 ~~l~p~his~y~ 251 (471)
.+++++.|.+.+
T Consensus 179 ~~~Gad~IGv~~ 190 (272)
T 3qja_A 179 LKAGAKVIGVNA 190 (272)
T ss_dssp HHHTCSEEEEES
T ss_pred HHCCCCEEEECC
Confidence 677999888873
No 447
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=22.08 E-value=3.6e+02 Score=24.22 Aligned_cols=82 Identities=7% Similarity=0.080 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Q 012112 135 SILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVE 214 (471)
Q Consensus 135 ~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~ 214 (471)
+.++.+++.++ ++.+.+.- .++.+.++...++|.+-|..| | +| ...++.+++.|..
T Consensus 57 ~~i~~l~~~~~-----~l~vgaGt-vl~~d~~~~A~~aGAd~v~~p-~-~d----------------~~v~~~ar~~g~~ 112 (224)
T 1vhc_A 57 DAIRLLRANRP-----DFLIAAGT-VLTAEQVVLAKSSGADFVVTP-G-LN----------------PKIVKLCQDLNFP 112 (224)
T ss_dssp HHHHHHHHHCT-----TCEEEEES-CCSHHHHHHHHHHTCSEEECS-S-CC----------------HHHHHHHHHTTCC
T ss_pred HHHHHHHHhCc-----CcEEeeCc-EeeHHHHHHHHHCCCCEEEEC-C-CC----------------HHHHHHHHHhCCC
Confidence 45566666653 24555543 458899999999999999777 4 33 2345667777665
Q ss_pred eeEeeeecCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 215 NWSLDLISSLPHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 215 ~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
+|.| -.|+++. ..+.+.+.|.|.+|+
T Consensus 113 -----~i~G--v~t~~e~----~~A~~~Gad~vk~Fp 138 (224)
T 1vhc_A 113 -----ITPG--VNNPMAI----EIALEMGISAVKFFP 138 (224)
T ss_dssp -----EECE--ECSHHHH----HHHHHTTCCEEEETT
T ss_pred -----EEec--cCCHHHH----HHHHHCCCCEEEEee
Confidence 4556 3455554 446788999998855
No 448
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=21.95 E-value=66 Score=23.70 Aligned_cols=44 Identities=11% Similarity=0.081 Sum_probs=31.5
Q ss_pred HHHhccccCCCCHhhHHHHhCC----ChHHHHHHHHHHHHHCCCEEEec
Q 012112 375 LMLSFRTARGVDLKSFGETFGC----SLVHTLCKAYKPYIESGHVICLD 419 (471)
Q Consensus 375 ~~~~Lr~~~gi~~~~~~~~fg~----~~~~~~~~~~~~~~~~gll~~~~ 419 (471)
++.-|....++...++.+.++. +. ..+...++.|++.|+|....
T Consensus 14 vL~~L~~~~~~t~~ei~~~l~~~~~~s~-~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 14 VMKVIWKHSSINTNEVIKELSKTSTWSP-KTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHTSSSEEHHHHHHHHHHHSCCCH-HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHcCCCCCHHHHHHHHhhcCCccH-HHHHHHHHHHHHCCCeEEEe
Confidence 4444444567888888888763 22 34667899999999998754
No 449
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=21.76 E-value=1.6e+02 Score=24.76 Aligned_cols=43 Identities=12% Similarity=0.078 Sum_probs=34.8
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEE
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVIC 417 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~ 417 (471)
.++..|.....+...++++.+|.+.. .....++.|.+.|++..
T Consensus 14 ~il~~L~~~~~~s~~ela~~lg~s~~-tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 14 KILQVLQENGRLTNVELSERVALSPS-PCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHH-HHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHH-HHHHHHHHHHHCCCEee
Confidence 45555666667999999999999864 46788999999999974
No 450
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}
Probab=21.67 E-value=2.4e+02 Score=27.08 Aligned_cols=64 Identities=8% Similarity=0.096 Sum_probs=46.7
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEec--CCCCCHHHHHHHHHCCCCEEEEccCCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMD--PGTFDARKMEELMDLGVNRVSLGVQAF 184 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~--P~~l~~e~l~~l~~~GvnrvsiGvQS~ 184 (471)
++.|++.+ |-.++.|..+.++++.+++.++ .++.+-++ .+.-....+..+ ++|+++|.-.+-.+
T Consensus 157 ~~~i~l~D-t~G~~~P~~~~~lv~~l~~~~~----~~i~~H~Hn~~G~a~an~laA~-~aGa~~vd~si~Gl 222 (320)
T 3dxi_A 157 ADLFCMVD-SFGGITPKEVKNLLKEVRKYTH----VPVGFHGHDNLQLGLINSITAI-DDGIDFIDATITGM 222 (320)
T ss_dssp CSEEEEEC-TTSCCCHHHHHHHHHHHHHHCC----SCEEEECBCTTSCHHHHHHHHH-HTTCSEEEEBGGGC
T ss_pred CCEEEECc-ccCCCCHHHHHHHHHHHHHhCC----CeEEEEeCCCCccHHHHHHHHH-HhCCCEEEEecccc
Confidence 67899974 7778899999999999999875 34666653 332345556555 57999998877554
No 451
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=21.58 E-value=1.9e+02 Score=26.48 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=37.7
Q ss_pred hHHHHHHHHhccccCCC-CHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCcc
Q 012112 369 DLAMDVLMLSFRTARGV-DLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEWR 422 (471)
Q Consensus 369 ~~~~e~~~~~Lr~~~gi-~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~~ 422 (471)
+.+.+.|. ++.-..-+ +..++.++||.+-. .+.++++.|+++|+|.. .+.+
T Consensus 21 ~~l~~~I~-~~~~g~~lPse~~La~~~~vSr~-tvr~Al~~L~~~G~i~~-~g~G 72 (248)
T 3f8m_A 21 AELDRMLD-GMRIGDPFPAEREIAEQFEVARE-TVRQALRELLIDGRVER-RGRT 72 (248)
T ss_dssp HHHHHHHH-HCCTTCBCCCHHHHHHHTTCCHH-HHHHHHHHHHHTTSEEE-ETTE
T ss_pred HHHHHHHh-CCCCCCcCcCHHHHHHHHCcCHH-HHHHHHHHHHHCCCEEe-CCCE
Confidence 34455555 55544446 78899999999854 47889999999999998 6544
No 452
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=21.57 E-value=1.6e+02 Score=25.24 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=35.1
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEE
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVIC 417 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~ 417 (471)
.++..|.....+...+++++.|.+.. .....+++|.+.|++..
T Consensus 21 ~IL~~L~~~~~~s~~eLA~~lglS~~-tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 21 NILRLLKKDARLTISELSEQLKKPES-TIHFRIKKLQERGVIER 63 (171)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHH-HHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHH-HHHHHHHHHHHCCCEEe
Confidence 45556666677999999999999965 46788999999999964
No 453
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=21.54 E-value=5.1e+02 Score=24.31 Aligned_cols=75 Identities=15% Similarity=0.082 Sum_probs=36.4
Q ss_pred HHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCc
Q 012112 167 EELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKH 246 (471)
Q Consensus 167 ~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~h 246 (471)
+.+.+.|++-|-+.=-|+--. ..|.++..+.++.+.+.--. .+-+|.|.-+.+.++..+..+.+.+++.|.
T Consensus 39 ~~li~~Gv~Gl~v~GtTGE~~-------~Ls~eEr~~v~~~~~~~~~g--rvpViaGvg~~~t~~ai~la~~A~~~Gada 109 (303)
T 2wkj_A 39 QFNIQQGIDGLYVGGSTGEAF-------VQSLSEREQVLEIVAEEAKG--KIKLIAHVGCVSTAESQQLAASAKRYGFDA 109 (303)
T ss_dssp HHHHHTTCSEEEESSTTTTGG-------GSCHHHHHHHHHHHHHHHTT--TSEEEEECCCSSHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHcCCCEEEECeeccChh-------hCCHHHHHHHHHHHHHHhCC--CCcEEEecCCCCHHHHHHHHHHHHhCCCCE
Confidence 334455666665543322111 12444555555554443001 134566665555566666666666666665
Q ss_pred EEEE
Q 012112 247 VSVY 250 (471)
Q Consensus 247 is~y 250 (471)
+.+-
T Consensus 110 vlv~ 113 (303)
T 2wkj_A 110 VSAV 113 (303)
T ss_dssp EEEE
T ss_pred EEec
Confidence 5443
No 454
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=21.50 E-value=1.4e+02 Score=25.22 Aligned_cols=43 Identities=9% Similarity=0.165 Sum_probs=35.9
Q ss_pred HHHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEE
Q 012112 373 DVLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVI 416 (471)
Q Consensus 373 e~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~ 416 (471)
..++..|.....+...+++++.|.+.. .....+++|.+.|++.
T Consensus 6 ~~il~~L~~~~~~s~~~la~~lg~s~~-tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 6 RKILRILQEDSTLAVADLAKKVGLSTT-PCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHTTCSCSCHHHHHHHHTCCHH-HHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCcCHH-HHHHHHHHHHHCCCee
Confidence 456666777778999999999999965 4678899999999986
No 455
>3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A*
Probab=21.33 E-value=5.7e+02 Score=24.79 Aligned_cols=138 Identities=10% Similarity=0.087 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCeeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHH
Q 012112 91 VSNYIQLLCREIIATKPGHKTSPPLETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELM 170 (471)
Q Consensus 91 ~~~yv~~l~~Ei~~~~~~~~~~~~v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~ 170 (471)
.+...+.+++||..-.... +...--|-.+++.+. +++.+-+-+-.+++..-. .++.+.+-++......+.++.|+
T Consensus 153 ~e~l~~~~i~Ei~~Gi~~t--gikaG~I~~~~~~~~-~t~~E~k~frA~a~aa~e--tG~Pv~iHt~~~~~~~e~l~iL~ 227 (360)
T 3tn4_A 153 EDDIYDMFMAELTEGIADT--GIKAGVIKLASSKGR-ITEYEKMFFRAAARAQKE--TGAVIITHTQEGTMGPEQAAYLL 227 (360)
T ss_dssp HHHHHHHHHHHHHTCSTTS--CCCCSEEEEECBTTB-CCHHHHHHHHHHHHHHHH--HCCEEEEECSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccC--CCcceEEEEEccCCC-CCHHHHHHHHHHHHHHHH--hCCcEEEEcCcccCCHHHHHHHH
Confidence 3556677888887554321 222333445555443 465443333233322111 23568888777666679999999
Q ss_pred HCCCC--EEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCC----CCHHHHHHHHHHHHhCC-
Q 012112 171 DLGVN--RVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPH----QTPQMWEESLRRTVGAQ- 243 (471)
Q Consensus 171 ~~Gvn--rvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg----qT~e~~~~~l~~~~~l~- 243 (471)
+.|++ |+.||=-- ...+.+.. +.+-+.|+- |++|.| |..+ .+.+.-.+.|..+++.+
T Consensus 228 eeG~~~~~vvi~H~~----------~~~d~~~~----~~~l~~G~y-l~fD~i-G~~~~~~~p~d~~r~~~l~~lv~~g~ 291 (360)
T 3tn4_A 228 EHGADPKKIVIGHMC----------DNTDPDYH----RKTLAYGVY-IAFDRF-GIQGMVGAPTDEERVRTLLALLRDGY 291 (360)
T ss_dssp HTTCCGGGEEECCGG----------GCCCHHHH----HHHHTTTCE-EEECCT-TCCCSTTCCCHHHHHHHHHHHHHTTC
T ss_pred HcCCCCCceEEEcCC----------CCCCHHHH----HHHHHcCCE-EEEccc-ccccccCCCChHHHHHHHHHHHHhcC
Confidence 99985 77775311 11223222 333456885 888864 4433 24455666677777665
Q ss_pred CCcEEE
Q 012112 244 PKHVSV 249 (471)
Q Consensus 244 p~his~ 249 (471)
.++|-+
T Consensus 292 ~drILL 297 (360)
T 3tn4_A 292 EKQIML 297 (360)
T ss_dssp GGGEEE
T ss_pred cceEEE
Confidence 455543
No 456
>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei}
Probab=21.31 E-value=2.5e+02 Score=28.36 Aligned_cols=65 Identities=15% Similarity=0.346 Sum_probs=45.9
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCC------HHH----HHHHHHCCCCEEEEccCCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFD------ARK----MEELMDLGVNRVSLGVQAF 184 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~------~e~----l~~l~~~GvnrvsiGvQS~ 184 (471)
.+.||+-.|.| +.+++.++.+.++..++.. -+...+.| +++ ++. .+.|.++|++++++++..+
T Consensus 284 AD~if~E~~~~---~~eei~~f~~~v~~~~P~~---~l~~~~sP-sfnw~~~~~~~~~~~f~~eL~~lGv~~v~~~la~~ 356 (439)
T 3i4e_A 284 ADLIWCETGKP---DLEYAKKFAEAIHKQFPGK---LLSYNCSP-SFNWKKNLDDATIAKFQKELGAMGYKFQFITLAGF 356 (439)
T ss_dssp CSEEEECCSSC---CHHHHHHHHHHHHHHSTTC---EEEEECCS-SSCHHHHSCHHHHHTHHHHHHHHTCCEEEETTHHH
T ss_pred CCEEEecCCCC---CHHHHHHHHHHhcccCCce---EEeeCCCC-CCcCcccCCHHHHHHHHHHHHHcCCeEEEeChHHH
Confidence 78899855555 5689999999998766532 22233445 454 443 5678899999999998877
Q ss_pred CH
Q 012112 185 QD 186 (471)
Q Consensus 185 ~d 186 (471)
.-
T Consensus 357 ra 358 (439)
T 3i4e_A 357 HA 358 (439)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 457
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=21.29 E-value=2e+02 Score=23.32 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=27.2
Q ss_pred CHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCc
Q 012112 386 DLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEW 421 (471)
Q Consensus 386 ~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~ 421 (471)
+..++++.||++-. .+.+++..|...|+|....+.
T Consensus 40 ser~La~~~gVSr~-tVReAl~~L~~eGlv~~~~g~ 74 (134)
T 4ham_A 40 SIREFASRIGVNPN-TVSKAYQELERQEVIITVKGK 74 (134)
T ss_dssp CHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEEETTT
T ss_pred cHHHHHHHHCCCHH-HHHHHHHHHHHCCcEEEEcCc
Confidence 45677888888854 467899999999999876543
No 458
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=21.27 E-value=2.2e+02 Score=23.22 Aligned_cols=35 Identities=9% Similarity=0.009 Sum_probs=27.5
Q ss_pred CHhhHHHHhCCChHHHHHHHHHHHHHCCCEEEecCc
Q 012112 386 DLKSFGETFGCSLVHTLCKAYKPYIESGHVICLDEW 421 (471)
Q Consensus 386 ~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~~~~~ 421 (471)
+..++.++||++-. .+.+++..|...|+|....+.
T Consensus 30 se~~La~~~gvSr~-tVr~Al~~L~~~Gli~~~~g~ 64 (129)
T 2ek5_A 30 STNELAAFHRINPA-TARNGLTLLVEAGILYKKRGI 64 (129)
T ss_dssp CHHHHHHHTTCCHH-HHHHHHHHHHTTTSEEEETTT
T ss_pred CHHHHHHHHCcCHH-HHHHHHHHHHHCCcEEEecCC
Confidence 56778888888753 467899999999999876544
No 459
>3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii}
Probab=21.15 E-value=3.5e+02 Score=27.40 Aligned_cols=105 Identities=16% Similarity=0.235 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCC---CHHHHHHHHHC-CCCEEE-EccCCC--CHHHHHH--------
Q 012112 127 LVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTF---DARKMEELMDL-GVNRVS-LGVQAF--QDELLKS-------- 191 (471)
Q Consensus 127 ~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l---~~e~l~~l~~~-Gvnrvs-iGvQS~--~d~~L~~-------- 191 (471)
.++++++.++...+-+.|++ ++|| +.+ +.+-++.|.+. | .++. +|=+++ +++.++.
T Consensus 280 ~~t~~Elid~y~~lle~ypI-----v~IE---DPl~~dD~eg~a~Lt~~lg-~~iqIvGDDl~vTn~~~i~~~Ie~~a~n 350 (452)
T 3otr_A 280 HLTGEKLKEVYEGWLKKYPI-----ISVE---DPFDQDDFASFSAFTKDVG-EKTQVIGDDILVTNILRIEKALKDKACN 350 (452)
T ss_dssp EECHHHHHHHHHHHHHHSCE-----EEEE---CCSCTTCHHHHHHHHHHHT-TTSEEEESTTTTTCHHHHHHHHHHTCCS
T ss_pred cccHHHHHHHHHHHHhhhCc-----eEEe---cCCChhhHHHHHHHHHhhC-CCeEEEeCccccCCHHHHHHHHhcCCCC
Confidence 46788888887665555653 6777 334 44555555543 4 2232 565554 5554442
Q ss_pred -----cCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCC-CCCCHHHHHHHHHHHHhCCCCcE
Q 012112 192 -----CGRAHGLKEVYEAIEIVKLCGVENWSLDLISSL-PHQTPQMWEESLRRTVGAQPKHV 247 (471)
Q Consensus 192 -----l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~Gl-PgqT~e~~~~~l~~~~~l~p~hi 247 (471)
+++.-+..+..++++.++++|+. .|+|. -|||.+++..+|. +.++...|
T Consensus 351 ~IlIKvnQIGgITEalka~~lA~~~G~~-----vmvshrSGETeD~~iAdLa--Vgl~~gqI 405 (452)
T 3otr_A 351 CLLLKVNQIGSVTEAIEACLLAQKSGWG-----VQVSHRSGETEDSFIADLV--VGLRCGQI 405 (452)
T ss_dssp EEEECHHHHCCHHHHHHHHHHHHHTTCE-----EEEECCSSCCSCCHHHHHH--HHTTCCEE
T ss_pred EEEeeccccccHHHHHHHHHHHHHcCCe-----EEEeCCCCCCchhHHHHHH--HHcCCCcc
Confidence 23445788999999999999986 56665 6899999987764 45554433
No 460
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=20.95 E-value=3.9e+02 Score=25.18 Aligned_cols=52 Identities=10% Similarity=0.078 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCCeeEeeee-cCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 012112 198 LKEVYEAIEIVKLCGVENWSLDLI-SSLPHQTPQMWEESLRRTVGAQPKHVSVYD 251 (471)
Q Consensus 198 ~~~~~~ai~~~~~~G~~~v~~DlI-~GlPgqT~e~~~~~l~~~~~l~p~his~y~ 251 (471)
.++..+..+.+.++|.+.+-+--= |.-| |.+.+.+-.+.+.+.-.--|-+|.
T Consensus 93 t~~ai~la~~A~~~Gadavlv~~P~y~~~--s~~~l~~~f~~va~a~~lPiilYn 145 (306)
T 1o5k_A 93 TEKTLKLVKQAEKLGANGVLVVTPYYNKP--TQEGLYQHYKYISERTDLGIVVYN 145 (306)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCCSSCC--CHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCCC--CHHHHHHHHHHHHHhCCCCEEEEe
Confidence 355555566666666654322111 1112 556666666665553222344555
No 461
>2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A {Paenibacillus pabuli} PDB: 2jeq_A*
Probab=20.89 E-value=1.6e+02 Score=28.68 Aligned_cols=121 Identities=7% Similarity=0.090 Sum_probs=72.3
Q ss_pred CCCHHHHHHHHHCCCCEEEEccCC--C-CHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCeeEeeeecCCC----C---
Q 012112 160 TFDARKMEELMDLGVNRVSLGVQA--F-QDELLKSCGRAHG---LKEVYEAIEIVKLCGVENWSLDLISSLP----H--- 226 (471)
Q Consensus 160 ~l~~e~l~~l~~~GvnrvsiGvQS--~-~d~~L~~l~R~~t---~~~~~~ai~~~~~~G~~~v~~DlI~GlP----g--- 226 (471)
.++++.++.|++.|+|-|-+.+.- + .+. -.-..+ .+.+.++|+.+++.|+. |-+|+-..-+ |
T Consensus 69 ~~~~~d~~~l~~~G~n~vRl~i~w~~~~~~~----~~~~~~~~~l~~~d~~v~~a~~~Gi~-vild~h~~~~~~~~g~w~ 143 (395)
T 2jep_A 69 TVTPELIKKVKAAGFKSIRIPVSYLNNIGSA----PNYTINAAWLNRIQQVVDYAYNEGLY-VIINIHGDGYNSVQGGWL 143 (395)
T ss_dssp CCCHHHHHHHHHTTCCEEEECCCCGGGBCCT----TTCCBCHHHHHHHHHHHHHHHTTTCE-EEECCCGGGCTTSTTCCC
T ss_pred cCcHHHHHHHHHcCCCEEEEeeeeccccCCC----CCCccCHHHHHHHHHHHHHHHHCCCE-EEEECCCccccCCCCccc
Confidence 468999999999999977776642 1 110 000111 45688899999999997 7788765311 1
Q ss_pred --C------CHHHHHHHHHHHHh-CC-CCcEEEEeccccCCChhhhcccCCCCCCCCH---HHHHHHHHHHHHHHHHCCC
Q 012112 227 --Q------TPQMWEESLRRTVG-AQ-PKHVSVYDLQVEQGTKFGILYTPGEFPLPTE---TQSANFYRMASSMLSSAGY 293 (471)
Q Consensus 227 --q------T~e~~~~~l~~~~~-l~-p~his~y~l~~~pgT~l~~~~~~g~~~~p~~---~~~~~~~~~~~~~L~~~Gy 293 (471)
. +.+.+.+-.+.+.+ ++ -+.+-.|.+.-||... .+..+.. +.....++.+.+.+++.|-
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~~el~NEP~~~--------~w~~~~~~~~~~~~~~~~~~~~aIR~~~~ 215 (395)
T 2jep_A 144 LVNGGNQTAIKEKYKKVWQQIATKFSNYNDRLIFESMNEVFDG--------NYGNPNSAYYTNLNAYNQIFVDTVRQTGG 215 (395)
T ss_dssp CTTCSCHHHHHHHHHHHHHHHHHHTTTCCTTEEEECCSSCSCS--------CCSSCCHHHHHHHHHHHHHHHHHHHTSSG
T ss_pred cCCcccHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeecCCCCC--------CCCCCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1 13445555555443 32 1234478887777432 1111222 3456678888888888763
No 462
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Probab=20.88 E-value=4.2e+02 Score=24.75 Aligned_cols=119 Identities=13% Similarity=0.144 Sum_probs=82.0
Q ss_pred CCCCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCC----CCHHHHHHHHHHHHHc-CCCeeEeeeecCCCCCCHHHH
Q 012112 158 PGTFDARKMEELMDLGVNRVSLGVQAFQDELLKSCGRA----HGLKEVYEAIEIVKLC-GVENWSLDLISSLPHQTPQMW 232 (471)
Q Consensus 158 P~~l~~e~l~~l~~~GvnrvsiGvQS~~d~~L~~l~R~----~t~~~~~~ai~~~~~~-G~~~v~~DlI~GlPgqT~e~~ 232 (471)
|+..|.-..+.+.++|+.-|-+|=-|.. ..+|.. .+.+++...++.+.+. ... |.+|+=+|+ |.++++.
T Consensus 21 ~~a~D~~sA~~~~~aG~~ai~vsg~s~a----~~~G~pD~~~vt~~em~~~~~~I~~~~~~p-viaD~d~Gy-g~~~~~~ 94 (275)
T 2ze3_A 21 PNAWDVASARLLEAAGFTAIGTTSAGIA----HARGRTDGQTLTRDEMGREVEAIVRAVAIP-VNADIEAGY-GHAPEDV 94 (275)
T ss_dssp CEESSHHHHHHHHHHTCSCEEECHHHHH----HHSCCCSSSSSCHHHHHHHHHHHHHHCSSC-EEEECTTCS-SSSHHHH
T ss_pred ecccCHHHHHHHHHcCCCEEEECcHHHH----HhCCCCCCCCCCHHHHHHHHHHHHhhcCCC-EEeecCCCC-CCCHHHH
Confidence 4556777788888899998887622211 135654 3788888888766554 666 999999995 7799999
Q ss_pred HHHHHHHHhCCCCcEEEEeccccCCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q 012112 233 EESLRRTVGAQPKHVSVYDLQVEQGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGY 293 (471)
Q Consensus 233 ~~~l~~~~~l~p~his~y~l~~~pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy 293 (471)
.+++..+.+.+..-|.+= .++. . .|+ .+-+.++..+....+.+.....|-
T Consensus 95 ~~~v~~l~~aGaagv~iE-----D~~~-~----~~k-~l~~~~e~~~~I~aa~~a~~~~g~ 144 (275)
T 2ze3_A 95 RRTVEHFAALGVAGVNLE-----DATG-L----TPT-ELYDLDSQLRRIEAARAAIDASGV 144 (275)
T ss_dssp HHHHHHHHHTTCSEEEEE-----CBCS-S----SSS-CBCCHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCcEEEEC-----CCcC-C----CCC-ccCCHHHHHHHHHHHHHhHhhcCC
Confidence 999999999998766543 3321 1 222 455667777777777776665453
No 463
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=20.78 E-value=1.4e+02 Score=24.78 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=35.2
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEE
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVIC 417 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~ 417 (471)
.++..|+....+...++++++|.+.. .....++.|.+.|++..
T Consensus 12 ~il~~L~~~~~~s~~ela~~lg~s~~-tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 12 GILEALMGNARTAYAELAKQFGVSPE-TIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHTSCHH-HHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHH-HHHHHHHHHHHcCCcce
Confidence 45556666678999999999999865 46788999999999974
No 464
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=20.71 E-value=1.6e+02 Score=23.70 Aligned_cols=39 Identities=8% Similarity=0.119 Sum_probs=30.2
Q ss_pred ccCCCCHhhHHHHhCCCh-HHHHHHHHHHHHHCCCEEEec
Q 012112 381 TARGVDLKSFGETFGCSL-VHTLCKAYKPYIESGHVICLD 419 (471)
Q Consensus 381 ~~~gi~~~~~~~~fg~~~-~~~~~~~~~~~~~~gll~~~~ 419 (471)
...|++.++++.++...+ ...+...++.|+++|.+..++
T Consensus 84 ~~~G~~keeLr~~~~~~~~~~~~~~ll~~l~~~g~l~~~~ 123 (135)
T 2v9v_A 84 LRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLAA 123 (135)
T ss_dssp TSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEECS
T ss_pred CccCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCEEecC
Confidence 568999999999875433 345677899999999998643
No 465
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=20.61 E-value=1.4e+02 Score=24.68 Aligned_cols=43 Identities=5% Similarity=0.104 Sum_probs=34.9
Q ss_pred HHHHhccccCCCCHhhHHHHhCCChHHHHHHHHHHHHHCCCEEE
Q 012112 374 VLMLSFRTARGVDLKSFGETFGCSLVHTLCKAYKPYIESGHVIC 417 (471)
Q Consensus 374 ~~~~~Lr~~~gi~~~~~~~~fg~~~~~~~~~~~~~~~~~gll~~ 417 (471)
.++..|.....+...++++.+|.+.. .....+++|.+.|++..
T Consensus 13 ~il~~L~~~~~~s~~ela~~lg~s~~-tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 13 QLVKILSENSRLTYRELADILNTTRQ-RIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHTTSCHH-HHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHH-HHHHHHHHHHHCCCEEE
Confidence 45555666677999999999999864 46788999999999974
No 466
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=20.59 E-value=56 Score=31.28 Aligned_cols=56 Identities=14% Similarity=0.352 Sum_probs=41.4
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEcc
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGV 181 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGv 181 (471)
++.|-++ + ++++.+.++.+.++..++ .+.+++. +.+|.+.++.+.++|++++++|-
T Consensus 218 aD~I~ld--~---~~~~~l~~~v~~l~~~~~-----~~~I~AS-GGIt~~ni~~~~~aGaD~i~vGs 273 (299)
T 2jbm_A 218 ADLVLLD--N---FKPEELHPTATVLKAQFP-----SVAVEAS-GGITLDNLPQFCGPHIDVISMGM 273 (299)
T ss_dssp CSEEEEE--S---CCHHHHHHHHHHHHHHCT-----TSEEEEE-SSCCTTTHHHHCCTTCCEEECTH
T ss_pred CCEEEEC--C---CCHHHHHHHHHHhhccCC-----CeeEEEE-CCCCHHHHHHHHHCCCCEEEECh
Confidence 5666664 2 467888888888776442 2455555 46799999999999999999984
No 467
>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A*
Probab=20.58 E-value=2.3e+02 Score=28.62 Aligned_cols=65 Identities=11% Similarity=0.223 Sum_probs=44.7
Q ss_pred eeEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCC------HHH----HHHHHHCCCCEEEEccCCC
Q 012112 115 LETVFFGGGTPSLVPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFD------ARK----MEELMDLGVNRVSLGVQAF 184 (471)
Q Consensus 115 v~~i~fGGGTps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~------~e~----l~~l~~~GvnrvsiGvQS~ 184 (471)
.+.||+-.++| +.+++.++.+.++..++.. -+..-..| +++ ++. .+.|.++|++++++|...+
T Consensus 279 AD~If~e~~~~---~~eei~~f~~~v~~~~P~~---~L~~~~sP-sfnw~~~~~~~~~~~f~~eLa~lGv~~v~~~~a~~ 351 (433)
T 3eol_A 279 CDLIWMETSKP---DLAQARRFAEAVHKAHPGK---LLAYNCSP-SFNWKKNLDDATIAKFQRELGAMGYKFQFITLAGF 351 (433)
T ss_dssp CSEEEECCSSC---CHHHHHHHHHHHHHHSTTC---CEEEECCS-SSCHHHHSCHHHHHHHHHHHHHHTEEEEEETTHHH
T ss_pred CCEEEEeCCCC---CHHHHHHHHHHhcccCCCc---ccccCCCC-CCcccccCChhHHhHHHHHHHHcCCeEEEeCcHHH
Confidence 68899966666 5589999999998766532 12222344 444 222 4678889999999998777
Q ss_pred CH
Q 012112 185 QD 186 (471)
Q Consensus 185 ~d 186 (471)
.-
T Consensus 352 ra 353 (433)
T 3eol_A 352 HQ 353 (433)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 468
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=20.53 E-value=3.9e+02 Score=25.10 Aligned_cols=28 Identities=14% Similarity=0.079 Sum_probs=13.6
Q ss_pred eecCCCCCCHHHHHHHHHHHHhCCCCcE
Q 012112 220 LISSLPHQTPQMWEESLRRTVGAQPKHV 247 (471)
Q Consensus 220 lI~GlPgqT~e~~~~~l~~~~~l~p~hi 247 (471)
+|.|.-+.+.++..+..+.+.+.++|.+
T Consensus 72 viaGvg~~~t~~ai~la~~A~~~Gadav 99 (297)
T 2rfg_A 72 VIAGAGSNNPVEAVRYAQHAQQAGADAV 99 (297)
T ss_dssp BEEECCCSSHHHHHHHHHHHHHHTCSEE
T ss_pred EEEccCCCCHHHHHHHHHHHHhcCCCEE
Confidence 4445444444444444455555555544
No 469
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=20.50 E-value=4.8e+02 Score=25.32 Aligned_cols=87 Identities=13% Similarity=0.122 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCCHHHHHHHHHCCCCEEEEccCCC-CHHHHHHcCCCCCHHHHHHHHH
Q 012112 128 VPPRFVSSILDTLTDKFGLSLDAEISMEMDPGTFDARKMEELMDLGVNRVSLGVQAF-QDELLKSCGRAHGLKEVYEAIE 206 (471)
Q Consensus 128 l~~~~l~~ll~~l~~~~~l~~~~eitiE~~P~~l~~e~l~~l~~~GvnrvsiGvQS~-~d~~L~~l~R~~t~~~~~~ai~ 206 (471)
++.+++..|.+..++. ++ .|. +.| ++.+.++.+.+.|+..+-||-=.. |-.+|+.+++
T Consensus 88 l~~e~~~~L~~~~~~~-Gi----~~~--st~--~d~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~------------ 146 (349)
T 2wqp_A 88 LNEEDEIKLKEYVESK-GM----IFI--STL--FSRAAALRLQRMDIPAYKIGSGECNNYPLIKLVAS------------ 146 (349)
T ss_dssp CCHHHHHHHHHHHHHT-TC----EEE--EEE--CSHHHHHHHHHHTCSCEEECGGGTTCHHHHHHHHT------------
T ss_pred CCHHHHHHHHHHHHHh-CC----eEE--Eee--CCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHh------------
Confidence 6778888877776653 32 344 334 789999999999999999985443 3334554433
Q ss_pred HHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCC
Q 012112 207 IVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQP 244 (471)
Q Consensus 207 ~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p 244 (471)
.|-. +=|=-|+ .|.++|...++.+.+.+.
T Consensus 147 ----~gkP---viLstGm--at~~Ei~~Ave~i~~~G~ 175 (349)
T 2wqp_A 147 ----FGKP---IILSTGM--NSIESIKKSVEIIREAGV 175 (349)
T ss_dssp ----TCSC---EEEECTT--CCHHHHHHHHHHHHHHTC
T ss_pred ----cCCe---EEEECCC--CCHHHHHHHHHHHHHcCC
Confidence 2333 2233344 377777777777766554
No 470
>2dsk_A Chitinase; catalytic domain, active domain, crystalline CHIT barrel, hydrolase; 1.50A {Pyrococcus furiosus} PDB: 3a4w_A* 3a4x_A* 3afb_A
Probab=20.45 E-value=3.7e+02 Score=25.68 Aligned_cols=86 Identities=14% Similarity=0.207 Sum_probs=51.6
Q ss_pred HHHHHHHHHCCCC-EEEEccCCCCHHHHHHcCCCCCHHHHHH-HHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHH
Q 012112 163 ARKMEELMDLGVN-RVSLGVQAFQDELLKSCGRAHGLKEVYE-AIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTV 240 (471)
Q Consensus 163 ~e~l~~l~~~Gvn-rvsiGvQS~~d~~L~~l~R~~t~~~~~~-ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~ 240 (471)
.+.++.+++.|++ .||||=++.+. .+.. ..+.+++.+ ....+.++|++.|.+|+=.|. ..+.+.+-|+.+.
T Consensus 64 ~~~I~~~q~~G~kVllSiGGa~Gs~-~~~s---~~~~~~~a~~~~~~i~~ygldGIDfDiE~~~---~~d~~~~aL~~l~ 136 (311)
T 2dsk_A 64 VDEVRELREIGGEVIIAFGGAVGPY-LCQQ---ASTPEQLAEWYIKVIDTYNATYLDFDIEAGI---DADKLADALLIVQ 136 (311)
T ss_dssp HHHHHHHHTTTCEEEEEEEESSCCC-HHHH---CSSHHHHHHHHHHHHHHHTCSEEEEEECSCC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEEecCCCCcc-cccc---ccCHHHHHHHHHHHHHHhCCCcEEEeccCCc---cHHHHHHHHHHHH
Confidence 4678888888876 67888888764 2222 223445444 335567788888888887763 3455666666665
Q ss_pred hCCCCcEEEEecccc
Q 012112 241 GAQPKHVSVYDLQVE 255 (471)
Q Consensus 241 ~l~p~his~y~l~~~ 255 (471)
+..+...-.+.|...
T Consensus 137 ~~~p~~~vs~TL~~~ 151 (311)
T 2dsk_A 137 RERPWVKFSFTLPSD 151 (311)
T ss_dssp HHSTTCEEEEEEEEE
T ss_pred hhCCCcEEEEEeccC
Confidence 545543333433333
No 471
>1pz1_A GSP69, general stress protein 69; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; HET: NAP; 2.20A {Bacillus subtilis} SCOP: c.1.7.1
Probab=20.42 E-value=2.5e+02 Score=26.70 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHH-hCCCCcEEEEecccc-CCChhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHCCCc-eecccccc
Q 012112 226 HQTPQMWEESLRRTV-GAQPKHVSVYDLQVE-QGTKFGILYTPGEFPLPTETQSANFYRMASSMLSSAGYR-HYEISSYG 302 (471)
Q Consensus 226 gqT~e~~~~~l~~~~-~l~p~his~y~l~~~-pgT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~-~yeis~fa 302 (471)
..+.+.+++.++..+ +|+.|+|-+|.+.-. +.+ + .+ +.+. +.+.|.+.|.. .+.+|||.
T Consensus 97 ~~~~~~i~~~~~~SL~rLg~dyiDl~~lH~p~~~~-------------~-~~---e~~~-al~~l~~~Gkir~iGvSn~~ 158 (333)
T 1pz1_A 97 HANRARIVEEVENSLKRLQTDYIDLYQVHWPDPLV-------------P-IE---ETAE-VMKELYDAGKIRAIGVSNFS 158 (333)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSCBSEEEECSCCTTS-------------C-HH---HHHH-HHHHHHHTTSBSCEEECSCC
T ss_pred CCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCC-------------C-HH---HHHH-HHHHHHHCCcCCEEEecCCC
Confidence 357888888888754 589999999976421 111 1 12 2333 55667788865 56889885
No 472
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=20.30 E-value=5.6e+02 Score=24.94 Aligned_cols=30 Identities=3% Similarity=-0.068 Sum_probs=15.9
Q ss_pred eecCCCCCCHHHHHHHHHHHHhCCCCcEEE
Q 012112 220 LISSLPHQTPQMWEESLRRTVGAQPKHVSV 249 (471)
Q Consensus 220 lI~GlPgqT~e~~~~~l~~~~~l~p~his~ 249 (471)
+|.|.-+.+.++..+..+.+.+.+++.+.+
T Consensus 131 ViaGvg~~st~eai~la~~A~~~Gadavlv 160 (360)
T 4dpp_A 131 VIGNTGSNSTREAIHATEQGFAVGMHAALH 160 (360)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred EEEecCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 455554445555555555555555554443
No 473
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=20.29 E-value=5.2e+02 Score=23.99 Aligned_cols=71 Identities=13% Similarity=0.026 Sum_probs=35.9
Q ss_pred HHHHHCCCCEEEEccCCCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCCCCHHHHHHHHHHHHhCCCCc
Q 012112 167 EELMDLGVNRVSLGVQAFQDELLKSCGRAHGLKEVYEAIEIVKLCGVENWSLDLISSLPHQTPQMWEESLRRTVGAQPKH 246 (471)
Q Consensus 167 ~~l~~~GvnrvsiGvQS~~d~~L~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~h 246 (471)
+.+.+.|++-|-+.=-|+--. ..|.++-.+.++.+.+.- . - +|.|.-+.+.++..+..+.+.+.+.|.
T Consensus 27 ~~li~~Gv~gl~v~GtTGE~~-------~Ls~eEr~~v~~~~~~~~-~---g-ViaGvg~~~t~~ai~la~~A~~~Gada 94 (288)
T 2nuw_A 27 KNLLEKGIDAIFVNGTTGLGP-------ALSKDEKRQNLNALYDVT-H---K-LIFQVGSLNLNDVMELVKFSNEMDILG 94 (288)
T ss_dssp HHHHHTTCCEEEETSTTTTGG-------GSCHHHHHHHHHHHTTTC-S---C-EEEECCCSCHHHHHHHHHHHHTSCCSE
T ss_pred HHHHHcCCCEEEECccccChh-------hCCHHHHHHHHHHHHHHh-C---C-eEEeeCCCCHHHHHHHHHHHHhcCCCE
Confidence 334445666665543332111 124455555555555441 1 1 566665556666666666666666665
Q ss_pred EEE
Q 012112 247 VSV 249 (471)
Q Consensus 247 is~ 249 (471)
+.+
T Consensus 95 vlv 97 (288)
T 2nuw_A 95 VSS 97 (288)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 474
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Probab=20.23 E-value=2.1e+02 Score=27.21 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=18.5
Q ss_pred HHHHHHHHCCCCEEEEccCCCCH
Q 012112 164 RKMEELMDLGVNRVSLGVQAFQD 186 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiGvQS~~d 186 (471)
+..+.+.+.|.+-|-||.||..+
T Consensus 50 ~~a~~~v~~GAdiIDIGgeSTrP 72 (294)
T 2y5s_A 50 RRAERMIAEGADLLDIGGESTRP 72 (294)
T ss_dssp HHHHHHHHTTCSEEEEESSCCST
T ss_pred HHHHHHHHCCCCEEEECCCcCCC
Confidence 45677888899999999999644
No 475
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=20.07 E-value=1.5e+02 Score=26.69 Aligned_cols=86 Identities=9% Similarity=-0.045 Sum_probs=41.5
Q ss_pred eeEEEEcCCC-CCCCCHHHHHHHHHHHHHHcCCCCCcEEEEEe-c-CCCC--CHHHHHHHHHCCCCEEEEccCCCCHHHH
Q 012112 115 LETVFFGGGT-PSLVPPRFVSSILDTLTDKFGLSLDAEISMEM-D-PGTF--DARKMEELMDLGVNRVSLGVQAFQDELL 189 (471)
Q Consensus 115 v~~i~fGGGT-ps~l~~~~l~~ll~~l~~~~~l~~~~eitiE~-~-P~~l--~~e~l~~l~~~GvnrvsiGvQS~~d~~L 189 (471)
++.|-+.+.. |.-.+++.++++.+.+++. ++ +++.-. . ...+ -.+.++..++.|+..|.+...
T Consensus 44 ~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~-gl----~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~p~------- 111 (257)
T 3lmz_A 44 IHYLCIKDFHLPLNSTDEQIRAFHDKCAAH-KV----TGYAVGPIYMKSEEEIDRAFDYAKRVGVKLIVGVPN------- 111 (257)
T ss_dssp CCEEEECTTTSCTTCCHHHHHHHHHHHHHT-TC----EEEEEEEEEECSHHHHHHHHHHHHHHTCSEEEEEEC-------
T ss_pred CCEEEEecccCCCCCCHHHHHHHHHHHHHc-CC----eEEEEeccccCCHHHHHHHHHHHHHhCCCEEEecCC-------
Confidence 3444444332 3234667777777766653 33 232211 1 1111 124555556667776665211
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCeeEeeee
Q 012112 190 KSCGRAHGLKEVYEAIEIVKLCGVENWSLDLI 221 (471)
Q Consensus 190 ~~l~R~~t~~~~~~ai~~~~~~G~~~v~~DlI 221 (471)
.+.+.+..+.+++.|+. +.+--+
T Consensus 112 --------~~~l~~l~~~a~~~gv~-l~lEn~ 134 (257)
T 3lmz_A 112 --------YELLPYVDKKVKEYDFH-YAIHLH 134 (257)
T ss_dssp --------GGGHHHHHHHHHHHTCE-EEEECC
T ss_pred --------HHHHHHHHHHHHHcCCE-EEEecC
Confidence 13344555666666765 555544
No 476
>4f9d_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; family 4 carbohydrate esterase, TIM barrel, hydrolase, deace carbohydrate/sugar binding; HET: MES; 1.90A {Escherichia coli} PDB: 4f9j_A*
Probab=20.02 E-value=80 Score=33.56 Aligned_cols=155 Identities=19% Similarity=0.226 Sum_probs=93.4
Q ss_pred HHHHHHHHHHcCCCCCcEEEEEecCC-CCCHHHHHHHHHCCCCEEEEccCCCCHHH--HHHcCC-----CCCHHHHHHHH
Q 012112 134 SSILDTLTDKFGLSLDAEISMEMDPG-TFDARKMEELMDLGVNRVSLGVQAFQDEL--LKSCGR-----AHGLKEVYEAI 205 (471)
Q Consensus 134 ~~ll~~l~~~~~l~~~~eitiE~~P~-~l~~e~l~~l~~~GvnrvsiGvQS~~d~~--L~~l~R-----~~t~~~~~~ai 205 (471)
..--+.|.+..+.. ...-+-|. ..+++.++.++++|.. +.++.+..-... +-.+.| ..+.+.+.+.+
T Consensus 194 ~~Sk~~Le~~lG~~----~~~FayPyG~~n~~~~~~ake~Gy~-~afTt~~G~~~~~d~~~LpRi~V~~~~sl~~F~~~l 268 (618)
T 4f9d_A 194 VKMTEYLRTKVEVN----PHVFVWPYGEANGIAIEELKKLGYD-MFFTLESGLANASQLDSIPRVLIANNPSLKEFAQQI 268 (618)
T ss_dssp HHHHHHHHHHHCCC----CCEEECGGGCCCHHHHHHHHHTTCC-EEECCCSSCEETTCCSSBCCEECCSSCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCC----CCEEEcCCCCCCHHHHHHHHHcCCE-EEEEecCCCCCCCCCceeeeEEecCCCCHHHHHHHh
Confidence 33345566665532 34446665 4699999999999985 455555542211 113333 34677777666
Q ss_pred HHHHHc-C--CCeeEeeeecC-CCCCCHHHHHHHHHHHHhCCCCcEEEEeccccCCChhhh-cccCCCCCCCCHHHHHHH
Q 012112 206 EIVKLC-G--VENWSLDLISS-LPHQTPQMWEESLRRTVGAQPKHVSVYDLQVEQGTKFGI-LYTPGEFPLPTETQSANF 280 (471)
Q Consensus 206 ~~~~~~-G--~~~v~~DlI~G-lPgqT~e~~~~~l~~~~~l~p~his~y~l~~~pgT~l~~-~~~~g~~~~p~~~~~~~~ 280 (471)
.-+... + +-.|.+|.+|+ =|-|+.+.+.+.|+.+.+++++.|-+-.+.=..|.-... .+-.... +|- .+++
T Consensus 269 ~g~~~~~~~rv~~vdLDy~yd~dp~q~~~nl~~li~ri~~~g~~~V~lqaf~dp~gdg~~~~~yfpn~~-~p~---~~Dl 344 (618)
T 4f9d_A 269 ITVQEKSPQRIMHIDLDYVYDENLQQMDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKEVWFPNRL-LPM---KADI 344 (618)
T ss_dssp HTTTCCCCCEEEEECHHHHCCSSHHHHHHHHHHHHHHHHHTTCCEEEEECEECTTCSSCBCEESSCCSS-SCB---SCSC
T ss_pred hcccccCCceEEEEeeccccCCCHHHHHHhHHHHHHHHHHcCCCEEEEEEEEcCCCCcccccccCCCCC-cch---hhhh
Confidence 655422 2 23466788887 678899999999999999999999877765433432211 1112221 121 3445
Q ss_pred HHHHH-HHHHHCCCceec
Q 012112 281 YRMAS-SMLSSAGYRHYE 297 (471)
Q Consensus 281 ~~~~~-~~L~~~Gy~~ye 297 (471)
|..+. ..-.++|.+.|.
T Consensus 345 f~~v~wql~~r~~v~vyA 362 (618)
T 4f9d_A 345 FSRVAWQLRTRSGVNIYA 362 (618)
T ss_dssp HHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHhhhcCCEEEE
Confidence 55544 555678888773
No 477
>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A
Probab=20.00 E-value=72 Score=34.76 Aligned_cols=62 Identities=11% Similarity=0.113 Sum_probs=43.1
Q ss_pred HHHHHHHHCCCCEEEEc-cCCCC--------HHHHHHcC-CCCCHHHHHHHHHHHHHcCCCeeEeeeecCCCC
Q 012112 164 RKMEELMDLGVNRVSLG-VQAFQ--------DELLKSCG-RAHGLKEVYEAIEIVKLCGVENWSLDLISSLPH 226 (471)
Q Consensus 164 e~l~~l~~~GvnrvsiG-vQS~~--------d~~L~~l~-R~~t~~~~~~ai~~~~~~G~~~v~~DlI~GlPg 226 (471)
++|..|+++|||.|.|- |.-+. ..-...+. |--+.+++.+.|+.+++.|+. |-+|++++.-+
T Consensus 206 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~dy~a~~~~~Gt~~df~~lv~~~H~~Gi~-VilD~V~NH~~ 277 (755)
T 3aml_A 206 NVLPRIRANNYNTVQLMAIMEHSYYASFGYHVTNFFAVSSRSGTPEDLKYLVDKAHSLGLR-VLMDVVHSHAS 277 (755)
T ss_dssp HTHHHHHHTTCCEEEEESCEECSCGGGTTCSCSEEEEECGGGCCHHHHHHHHHHHHHTTCE-EEEEECCSCBC
T ss_pred HHHHHHHHcCCCEEEECchhcCCCCCCCCCccCCCCccCCCCCCHHHHHHHHHHHHHCCCE-EEEEEeccccc
Confidence 46899999999998764 22211 00000111 123789999999999999998 99999998643
Done!