Query 012113
Match_columns 470
No_of_seqs 248 out of 2122
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 23:11:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 2.8E-57 6E-62 440.4 54.2 434 32-469 12-449 (455)
2 PRK10189 MATE family multidrug 100.0 4.1E-53 8.8E-58 415.3 55.7 436 30-468 22-467 (478)
3 PRK00187 multidrug efflux prot 100.0 6.5E-52 1.4E-56 406.9 55.0 431 32-465 5-446 (464)
4 PRK01766 multidrug efflux prot 100.0 3.1E-50 6.7E-55 396.6 54.9 434 31-467 6-446 (456)
5 PRK10367 DNA-damage-inducible 100.0 7.6E-50 1.6E-54 388.6 53.5 425 33-468 5-435 (441)
6 PRK09575 vmrA multidrug efflux 100.0 7E-50 1.5E-54 392.0 52.3 425 32-462 7-435 (453)
7 TIGR01695 mviN integral membra 100.0 1.5E-38 3.2E-43 318.5 51.5 413 39-463 2-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 3.7E-38 8.1E-43 314.5 46.9 415 40-463 2-434 (488)
9 TIGR00797 matE putative efflux 100.0 2.4E-37 5.3E-42 294.3 42.5 338 45-385 1-341 (342)
10 PRK15099 O-antigen translocase 100.0 4.7E-36 1E-40 292.3 45.9 408 39-465 3-414 (416)
11 KOG1347 Uncharacterized membra 100.0 6.8E-36 1.5E-40 287.9 32.1 436 32-469 23-458 (473)
12 PF03023 MVIN: MviN-like prote 100.0 5E-31 1.1E-35 257.0 48.3 386 67-463 5-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 4.9E-30 1.1E-34 245.1 50.1 421 36-464 6-438 (518)
14 PRK10459 colanic acid exporter 100.0 2.3E-29 4.9E-34 251.0 46.8 398 36-462 4-404 (492)
15 COG2244 RfbX Membrane protein 100.0 6.2E-27 1.3E-31 233.0 40.8 404 34-461 3-409 (480)
16 PRK10367 DNA-damage-inducible 99.9 1.4E-21 3E-26 190.6 27.3 207 254-462 5-211 (441)
17 COG0534 NorM Na+-driven multid 99.9 1.8E-21 3.8E-26 189.9 27.7 208 254-464 13-222 (455)
18 PRK00187 multidrug efflux prot 99.9 2.4E-21 5.1E-26 190.7 27.2 206 253-462 5-214 (464)
19 PRK10189 MATE family multidrug 99.9 3.4E-21 7.4E-26 189.6 27.0 205 254-461 25-235 (478)
20 PRK09575 vmrA multidrug efflux 99.9 3E-21 6.5E-26 189.7 25.0 208 254-463 8-215 (453)
21 PRK01766 multidrug efflux prot 99.9 1.2E-20 2.7E-25 186.2 27.9 209 252-463 6-218 (456)
22 TIGR01695 mviN integral membra 99.8 1.7E-17 3.7E-22 166.4 31.7 206 32-239 218-428 (502)
23 PF01943 Polysacc_synt: Polysa 99.8 9.2E-17 2E-21 147.7 33.1 270 40-326 2-272 (273)
24 TIGR00797 matE putative efflux 99.8 2.5E-17 5.5E-22 156.7 25.2 194 266-462 1-196 (342)
25 PF01554 MatE: MatE; InterPro 99.8 7.5E-19 1.6E-23 148.0 8.8 162 266-429 1-162 (162)
26 PF03023 MVIN: MviN-like prote 99.8 8.8E-16 1.9E-20 150.1 31.0 206 33-240 194-404 (451)
27 TIGR02900 spore_V_B stage V sp 99.7 3.7E-16 8.1E-21 156.2 24.9 202 32-238 220-433 (488)
28 PF01554 MatE: MatE; InterPro 99.7 8.6E-18 1.9E-22 141.6 6.5 160 45-205 1-162 (162)
29 COG0728 MviN Uncharacterized m 99.7 9.8E-14 2.1E-18 133.7 34.9 205 34-240 229-438 (518)
30 PRK10459 colanic acid exporter 99.7 4.5E-14 9.7E-19 141.1 34.1 200 33-238 203-404 (492)
31 PRK15099 O-antigen translocase 99.7 1.3E-14 2.9E-19 141.6 25.8 199 32-237 210-410 (416)
32 PF13440 Polysacc_synt_3: Poly 99.7 2.6E-13 5.6E-18 123.1 30.8 247 55-325 2-250 (251)
33 COG2244 RfbX Membrane protein 99.6 1.1E-13 2.4E-18 137.9 25.5 187 32-224 208-396 (480)
34 KOG1347 Uncharacterized membra 99.4 4.6E-11 9.9E-16 116.2 20.6 205 254-462 24-229 (473)
35 PF04506 Rft-1: Rft protein; 99.3 1.1E-08 2.4E-13 101.0 32.9 422 40-463 4-470 (549)
36 KOG2864 Nuclear division RFT1 99.1 4.3E-06 9.3E-11 77.6 34.5 416 34-463 5-449 (530)
37 PF07260 ANKH: Progressive ank 99.0 4.1E-06 8.9E-11 74.5 28.4 265 33-305 7-286 (345)
38 PF14667 Polysacc_synt_C: Poly 98.6 5.5E-06 1.2E-10 68.0 17.4 79 159-239 2-80 (146)
39 PF04506 Rft-1: Rft protein; 98.4 4.7E-05 1E-09 75.7 21.4 203 36-239 252-470 (549)
40 PF14667 Polysacc_synt_C: Poly 98.4 2.1E-06 4.6E-11 70.5 9.0 79 382-463 2-80 (146)
41 KOG2864 Nuclear division RFT1 98.3 0.00023 5E-09 66.5 20.1 201 37-239 239-449 (530)
42 PF01943 Polysacc_synt: Polysa 98.2 0.00038 8.2E-09 63.6 21.3 188 262-463 3-191 (273)
43 PF13440 Polysacc_synt_3: Poly 97.9 0.0032 7E-08 56.7 20.9 164 281-461 7-171 (251)
44 PF07260 ANKH: Progressive ank 97.7 0.027 5.8E-07 50.8 22.1 160 254-419 7-169 (345)
45 COG4267 Predicted membrane pro 97.2 0.18 3.9E-06 46.6 36.3 339 87-452 74-435 (467)
46 COG4267 Predicted membrane pro 88.7 22 0.00047 33.6 18.9 137 309-462 74-210 (467)
47 PF04505 Dispanin: Interferon- 67.5 35 0.00075 24.5 6.6 43 311-353 32-74 (82)
48 TIGR00383 corA magnesium Mg(2+ 48.5 63 0.0014 30.1 7.0 58 406-465 253-317 (318)
49 PF05975 EcsB: Bacterial ABC t 44.3 3E+02 0.0066 26.5 16.6 40 109-148 89-130 (386)
50 COG0598 CorA Mg2+ and Co2+ tra 43.9 2.1E+02 0.0046 26.7 9.7 58 406-465 257-321 (322)
51 PRK11663 regulatory protein Uh 41.0 3.5E+02 0.0076 26.4 40.8 29 434-462 398-426 (434)
52 PRK09546 zntB zinc transporter 37.9 87 0.0019 29.4 6.1 51 413-465 266-323 (324)
53 PF05975 EcsB: Bacterial ABC t 37.0 3.9E+02 0.0085 25.8 14.9 37 330-366 88-124 (386)
54 PRK11085 magnesium/nickel/coba 36.4 1.1E+02 0.0025 28.5 6.4 57 406-465 251-315 (316)
55 PF06609 TRI12: Fungal trichot 35.4 5.3E+02 0.011 26.7 32.8 66 349-416 322-387 (599)
56 PF03814 KdpA: Potassium-trans 33.0 3E+02 0.0065 27.8 8.8 131 211-358 52-182 (552)
57 PRK05482 potassium-transportin 29.8 5.4E+02 0.012 26.2 10.1 129 211-356 57-185 (559)
58 PF11830 DUF3350: Domain of un 28.4 1.2E+02 0.0025 19.8 3.5 35 10-45 6-40 (56)
59 PF02592 DUF165: Uncharacteriz 25.1 3.7E+02 0.0079 21.7 12.4 101 96-203 12-116 (145)
60 PF01595 DUF21: Domain of unkn 23.3 4.3E+02 0.0094 21.9 13.4 52 320-371 103-154 (183)
61 COG4176 ProW ABC-type proline/ 23.0 3.2E+02 0.007 24.8 6.4 82 31-114 197-285 (290)
62 PF01102 Glycophorin_A: Glycop 22.6 1E+02 0.0023 24.0 3.0 9 456-464 84-92 (122)
63 COG2211 MelB Na+/melibiose sym 22.5 7.8E+02 0.017 24.6 24.0 57 35-92 10-69 (467)
64 PF06946 Phage_holin_5: Phage 22.3 3.3E+02 0.0071 20.1 6.5 51 187-237 32-83 (93)
65 KOG2468 Dolichol kinase [Lipid 20.6 8.3E+02 0.018 24.1 11.7 73 264-345 379-451 (510)
66 PF14248 DUF4345: Domain of un 20.5 4.1E+02 0.009 20.6 12.8 122 336-462 1-123 (124)
67 PTZ00370 STEVOR; Provisional 20.3 1.4E+02 0.003 27.2 3.7 32 437-468 255-289 (296)
68 PRK03612 spermidine synthase; 20.3 9.1E+02 0.02 24.5 22.6 46 189-236 151-197 (521)
69 TIGR01478 STEVOR variant surfa 20.3 1.3E+02 0.0028 27.2 3.5 32 437-468 259-293 (295)
70 PF02487 CLN3: CLN3 protein; 20.3 8.1E+02 0.018 23.9 15.1 54 31-84 237-295 (402)
71 COG2060 KdpA K+-transporting A 20.1 8.9E+02 0.019 24.3 13.2 35 211-245 59-93 (560)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=2.8e-57 Score=440.44 Aligned_cols=434 Identities=27% Similarity=0.401 Sum_probs=412.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 012113 32 MIVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYR 111 (470)
Q Consensus 32 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~ 111 (470)
.++..|+++++++|.+++++.+.+++.+|+.++||++++++++.+++.++..++ ..+..|++.+..+.++|++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 467899999999999999999999999999999999999999999999999997 9999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHHHH
Q 012113 112 MMGVHMLRAMLVLSLSSIPIAV-LWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLML 190 (470)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 190 (470)
+.++..++++.+.++++++..+ ...+.++++.+++.++++.+.+.+|+++..++.|+..++..+.+.+|+.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 9999999999999999988888 899999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh-cC-CCcchhHHHHHHHHHHHHHHHHHHHHhCcc-cccccCCCCHHHHHHHHHHHHHHHHH
Q 012113 191 TTGISTLVHVLSCWTLIFG-FG-FGNKGAALSNAISYWTNVIILAIYIKFSPK-CEKTWTGFSKEALENLRSFLGLGIPS 267 (470)
Q Consensus 191 ~~~~~~~~~i~~~~~li~~-~~-~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ 267 (470)
.+++++++|+++|++++++ ++ +|+.|+++||++++.+..++.+.+++++++ ......+..+.+++..|++++.|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999999 46 999999999999999999999999987664 22222333345689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 012113 268 ALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIILAL 347 (470)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~ 347 (470)
++.+..+...+...+.+++++| ++++|+|+++.++.++.++++.+++++..|.+++++|+||.+++++..+.+.+++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhHHHHHHHHHHHhHHHH
Q 012113 348 TEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLPCA 427 (470)
Q Consensus 348 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~ 427 (470)
.++...++.++++++++.++|++|+++.+.+..++++..+..++++++.+..+++||.||+|.+++.++.+.|.+.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhccchhhh
Q 012113 428 VYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLRTNWEQEV 469 (470)
Q Consensus 428 ~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (470)
+++.... +|..|+|++...++.++.+...++++|++|++..
T Consensus 409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (455)
T COG0534 409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKA 449 (455)
T ss_pred HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 9997664 8999999999999999999999999999998763
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=4.1e-53 Score=415.26 Aligned_cols=436 Identities=16% Similarity=0.231 Sum_probs=403.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCc
Q 012113 30 AGMIVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQ 109 (470)
Q Consensus 30 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~ 109 (470)
..+.+..|++++.++|.++++++..+.+.+|+.+++++|++++++++++.++..+. ..+..|++++..+.++|++|++|
T Consensus 22 ~~~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~ 100 (478)
T PRK10189 22 SYRVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRD 100 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCC
Confidence 34555699999999999999999999999999999999999999999999999886 88999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcC--CChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChh
Q 012113 110 YRMMGVHMLRAMLVLSLSSIPIAV-LWACTGKIFTTLH--QDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNIL 186 (470)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 186 (470)
+|++++..++++.++.+.+++.++ ...+.+++..++. .|+|+.+.+..|+++..++.|+..+...+.+.+|+.||++
T Consensus 101 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~ 180 (478)
T PRK10189 101 RRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTK 180 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH
Confidence 999999999999999999998888 7788999999884 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc----CCCcchhHHHHHHHHHHHHHHHHHHHHhCc--ccccccCC-CCHHHHHHHHH
Q 012113 187 PLMLTTGISTLVHVLSCWTLIFGF----GFGNKGAALSNAISYWTNVIILAIYIKFSP--KCEKTWTG-FSKEALENLRS 259 (470)
Q Consensus 187 ~~~~~~~~~~~~~i~~~~~li~~~----~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~ 259 (470)
.++..+++..++|++++++++++. ++|+.|+++|+.+++.+..++..+++.++. ..+.++++ +++.+++.+|+
T Consensus 181 ~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (478)
T PRK10189 181 IPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWE 260 (478)
T ss_pred HhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHH
Confidence 999999999999999999999864 689999999999999999888766665432 22222222 12235788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 012113 260 FLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAV 339 (470)
Q Consensus 260 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~s~~~~~~~~~~~~~~~ 339 (470)
+++.|+|.++..........+.+.++++++ ++++|+|+++.++..+.+++..+++++..|.+++++|++|.+++|+..
T Consensus 261 il~iG~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~ 338 (478)
T PRK10189 261 VMGIGIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQL 338 (478)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999888888899988 889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhHHHHHHHH
Q 012113 340 QIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAY 419 (470)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 419 (470)
+.+.++++.+++.++++++++++++..+|++|+++.+.+..++++.++..++++++.+..+.++|.||++.++++++.+.
T Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~ 418 (478)
T PRK10189 339 RHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGM 418 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhccchhh
Q 012113 420 YLIGLPCAVYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLRTNWEQE 468 (470)
Q Consensus 420 ~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 468 (470)
|++.+|+.+++....++|+.|+|++..+++.++.++.++++++++|++.
T Consensus 419 ~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~ 467 (478)
T PRK10189 419 WGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWK 467 (478)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccC
Confidence 9999999999987778999999999999999999999999999999874
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=6.5e-52 Score=406.87 Aligned_cols=431 Identities=23% Similarity=0.329 Sum_probs=393.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 012113 32 MIVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYR 111 (470)
Q Consensus 32 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~ 111 (470)
.++..|++++.++|.+++++...+.+.+|+.+++|+|++++++++++.++..+. ..+..|++++..+.++|++|++|++
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~~ 83 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDIE 83 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChh
Confidence 356789999999999999999999999999999999999999999999999886 7888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHHHHH
Q 012113 112 MMGVHMLRAMLVLSLSSIPIAVLWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLT 191 (470)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 191 (470)
+.++..++++.+..+++++..++..+.++++.+++.|+|+.+.+.+|+++..++.++..+....++++|+.|+++.+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 163 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVI 163 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999999988775557799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhc----CCCcchhHHHHHHHHHHHHHHHHHHHHhCccc-cccc-CCCCHHHHHHHHHHHHHHH
Q 012113 192 TGISTLVHVLSCWTLIFGF----GFGNKGAALSNAISYWTNVIILAIYIKFSPKC-EKTW-TGFSKEALENLRSFLGLGI 265 (470)
Q Consensus 192 ~~~~~~~~i~~~~~li~~~----~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~ 265 (470)
++++.++|+++|+++++++ ++|+.|+++|+.+++....+...++.+++++. +.+. ++..+.+++..|++++.++
T Consensus 164 ~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~ 243 (464)
T PRK00187 164 SLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGL 243 (464)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhh
Confidence 9999999999999999864 48999999999999988887776666554322 1221 1222245788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 012113 266 PSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIIL 345 (470)
Q Consensus 266 p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~ 345 (470)
|.++.++.+.....+++.++++++ ++++++++++.++..+..++..+++++..+.++|++|++|++++++..+.++.+
T Consensus 244 P~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~ 321 (464)
T PRK00187 244 PIGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGF 321 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccC--cH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhHHHHHHHHH
Q 012113 346 ALTEGVLLSSIAVAARGIWGYVYSN--DI---EVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYY 420 (470)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 420 (470)
+..++++.+++++++++++.++|++ |+ ++.+.+..++++.+++.+++.++.+..+++++.||+|.+++.++.+.|
T Consensus 322 ~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~ 401 (464)
T PRK00187 322 GAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYW 401 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHH
Confidence 9999999999999999999999964 44 678999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhccc
Q 012113 421 LIGLPCAVYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLRTNW 465 (470)
Q Consensus 421 ~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 465 (470)
++++|+++++.+.+++|+.|+|+++.+++.+..++...++++++|
T Consensus 402 ~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~~~ 446 (464)
T PRK00187 402 LVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWKTA 446 (464)
T ss_pred HHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988788999999999999999998877766655433
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=3.1e-50 Score=396.62 Aligned_cols=434 Identities=24% Similarity=0.390 Sum_probs=401.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcc
Q 012113 31 GMIVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQY 110 (470)
Q Consensus 31 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~ 110 (470)
+.++.+|++++.++|.+++++...+.+.+|+.+++++|++++++++++.++.... ..+..|++.+..+.++|++|++|+
T Consensus 6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~~ 84 (456)
T PRK01766 6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGRR 84 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCh
Confidence 5678899999999999999999999999999999999999999999999987775 778899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHHH
Q 012113 111 RMMGVHMLRAMLVLSLSSIPIAV-LWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLM 189 (470)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 189 (470)
++.++..++++.+.++.+++..+ ...+.+++..+++.|++..+.+..|+++.+++.++..+...+++++++.|+++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 164 (456)
T PRK01766 85 ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTM 164 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 99999999999999999998888 77888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc----CCCcchhHHHHHHHHHHHHHHHHHHHHhCcccc-c-ccCCCCHHHHHHHHHHHHH
Q 012113 190 LTTGISTLVHVLSCWTLIFGF----GFGNKGAALSNAISYWTNVIILAIYIKFSPKCE-K-TWTGFSKEALENLRSFLGL 263 (470)
Q Consensus 190 ~~~~~~~~~~i~~~~~li~~~----~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 263 (470)
+.+.++.++|++++++++++. ++|+.|+++++.+++.+..++..++.+++++.+ . ...++.+.+++..|++++.
T Consensus 165 ~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l 244 (456)
T PRK01766 165 VIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKL 244 (456)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHc
Confidence 999999999999999998642 579999999999999999998888776554321 1 1122222357789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012113 264 GIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVI 343 (470)
Q Consensus 264 ~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~s~~~~~~~~~~~~~~~~~~~ 343 (470)
++|..++...+...+.++..++++++ ++++++++++.++.++..+++.+++.+..+.+++++|+||++++++..+.+.
T Consensus 245 ~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~ 322 (456)
T PRK01766 245 GLPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGL 322 (456)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999988 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhHHHHHHHHHHHh
Q 012113 344 ILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIG 423 (470)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 423 (470)
+++..++++.++++..+++++.++|++||++.+.+..++++..+..+++.++....+++++.||++.+++.++.+.|+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~ 402 (456)
T PRK01766 323 AVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLG 402 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhccchh
Q 012113 424 LPCAVYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLRTNWEQ 467 (470)
Q Consensus 424 i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~ 467 (470)
+|+.+++...+++|..|+|+++.+++.+..++.++++++.+||.
T Consensus 403 i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 403 LPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998778899999999999999999999999999888774
No 5
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=7.6e-50 Score=388.58 Aligned_cols=425 Identities=15% Similarity=0.137 Sum_probs=375.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 012113 33 IVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHL-GDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYR 111 (470)
Q Consensus 33 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~l-g~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~ 111 (470)
++..|++++.+.|.++++++..+++.+|+.++|++ |++++++++++.++..+. ..+..+++.+..+.++|++|++|+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 45688999999999999999999999999999997 778999999999999986 8889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHHHH
Q 012113 112 MMGVHMLRAMLVLSLSSIPIAV-LWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLML 190 (470)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 190 (470)
++++..++++.++++.+++..+ ...+.++++.+++.|+++.+.+.+|+++..++.|+..+..++.+.+|+.||+|.++.
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 9999999999999999998887 777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhCcccc-cccCCCCHHHHHHHHHHHHHHHHHHH
Q 012113 191 TTGISTLVHVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYIKFSPKCE-KTWTGFSKEALENLRSFLGLGIPSAL 269 (470)
Q Consensus 191 ~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~ 269 (470)
.++++.++|+++++++++++++|+.|+++|+.+++.+..++..++++++++.+ .+.+.++...++..|++++.|.|.++
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~ 243 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIML 243 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHH
Confidence 99999999999999999988899999999999999999888777765432211 11111221113578999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 012113 270 MVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIILALTE 349 (470)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (470)
+...+...+.+.+.++++++ ++++|+|+++.++.++.+++..+++++..|.+++++|+||.+++|+..+++.+++..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~ 321 (441)
T PRK10367 244 RSLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIV 321 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 8899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCC---cchhHHHHHHHHHHHhHHH
Q 012113 350 GVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGW---QKLGAYVNLGAYYLIGLPC 426 (470)
Q Consensus 350 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~~~~i~~ 426 (470)
+...++.++.+++++..+|++|+|+.+.+..++++..+..+..........++++.+| +|.+++.++++.|+..+
T Consensus 322 ~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~-- 399 (441)
T PRK10367 322 ALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLL-- 399 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999999999999999988764433344444444555554 99999999988764222
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhccchhh
Q 012113 427 AVYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLRTNWEQE 468 (470)
Q Consensus 427 ~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 468 (470)
. .+++|+.|+|++..+++.++.++..++++|+ ||+.
T Consensus 400 ---~--~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~~~ 435 (441)
T PRK10367 400 ---T--LPWLGNHGLWLALTVFLALRGLSLAAIWRRH-WRNG 435 (441)
T ss_pred ---H--HHHcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc
Confidence 1 2356999999999999999999988877765 8763
No 6
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=7e-50 Score=392.03 Aligned_cols=425 Identities=15% Similarity=0.145 Sum_probs=389.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcc
Q 012113 32 MIVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGH-LGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQY 110 (470)
Q Consensus 32 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~ 110 (470)
+++..|++++.++|.+++++...+++.+|+.++++ +|++++++++++.++..+. ..+..+++.+..+.++|++|++|+
T Consensus 7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCH
Confidence 34678999999999999999999999999999999 6999999999999999986 778889999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHHH
Q 012113 111 RMMGVHMLRAMLVLSLSSIPIAV-LWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLM 189 (470)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 189 (470)
|+.++..++++.++.+.+++..+ ...+.++++.+++.|++..+.+.+|+++..++.++..+.......+|+.|+++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999998888 88899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhCcc-cccccCCCCHHHHHHHHHHHHHHHHHH
Q 012113 190 LTTGISTLVHVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYIKFSPK-CEKTWTGFSKEALENLRSFLGLGIPSA 268 (470)
Q Consensus 190 ~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~ 268 (470)
..++++.++|+++++++++.+++|+.|+++++.+++.+..++.+++.+++++ .+.+.+.+ +.+++..|++++.|.|.+
T Consensus 166 ~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~il~ig~P~~ 244 (453)
T PRK09575 166 GLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKEL-RFNWSLAPKIVLLGSSSF 244 (453)
T ss_pred HHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccC-CcCHHHHHHHHHhChhHH
Confidence 9999999999999999999888999999999999999999888777665432 22222222 245788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 012113 269 LMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIILALT 348 (470)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~ 348 (470)
++.....+...+.+.+++++++ ++++|+++++.++..+..++..+++++..|.+++++|+||.|++++..+.++++++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~ 323 (453)
T PRK09575 245 FMYLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVL 323 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999988872 568999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhccccC-cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhHHHHHHHHHHHhHHHH
Q 012113 349 EGVLLSSIAVAARGIWGYVYSN-DIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLPCA 427 (470)
Q Consensus 349 ~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~ 427 (470)
.+++.++++..+++++.++|++ |||+.+.+.+++++..++.+++.++....+.+++.||++.++..++... ++++|+.
T Consensus 324 ~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~v~ip~~ 402 (453)
T PRK09575 324 AGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGNM-LIQLPFL 402 (453)
T ss_pred HHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhH-HHHHHHH
Confidence 9999999999999999999995 7899999999999999999999999999999999999999999998774 7789999
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 012113 428 VYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLR 462 (470)
Q Consensus 428 ~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 462 (470)
+++. +.+|+.|+|+++.+++.+..+...+++++
T Consensus 403 ~ll~--~~~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 403 FILP--KWLGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHH--HHHCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 9884 34699999999999999988877766654
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=1.5e-38 Score=318.46 Aligned_cols=413 Identities=13% Similarity=0.060 Sum_probs=350.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhH-HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhcCCccchHHH
Q 012113 39 QMQLAGPLVLVSFLQYSFQMISVMFVGH-LGDLSL-SSASMATSFAGVTGFSYM-LGMGSAVETFCGQAFGAKQYRMMGV 115 (470)
Q Consensus 39 ~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~-~~~~~~~~i~~~~~~~~~-~gl~~~~~~~~s~~~~~~~~~~~~~ 115 (470)
+.|.+.-..++++++.+++++|..+++| +|++++ ++++.+.++...+..... .|++++..+...++.++ +|+.++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~--~~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKK--EKEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh--hhHHHH
Confidence 5788899999999999999999999999 999999 899999999877523333 46888877777665322 256776
Q ss_pred HHHHHHHHHHHHHHH-HHH-HHHhHHHHHHHc--CCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHHHHH
Q 012113 116 HMLRAMLVLSLSSIP-IAV-LWACTGKIFTTL--HQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLT 191 (470)
Q Consensus 116 ~~~~~~~~~~~~~~~-~~~-~~~~~~~i~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 191 (470)
.+.+++....+.+.+ ..+ .+.+++++..++ +.+++..+.+.+|+++..++.++..+....++.+|+.+|++.++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 777766665544443 445 677888888877 4566777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcchhH--HHHHHHHHHHHHHHHHHHHhCcccccccCCCCHHHHHHHHHHHHHHHHHHH
Q 012113 192 TGISTLVHVLSCWTLIFGFGFGNKGAA--LSNAISYWTNVIILAIYIKFSPKCEKTWTGFSKEALENLRSFLGLGIPSAL 269 (470)
Q Consensus 192 ~~~~~~~~i~~~~~li~~~~~g~~g~a--~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 269 (470)
+++.++++++..+++.. ++|..|++ ++++++..+..++.+.+.+|++. +.+. +++ .+++..|++++++.|..+
T Consensus 160 ~i~~~i~~i~~~~~~~~--~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~-~~~-~~~~~~k~~l~~~~p~~~ 234 (502)
T TIGR01695 160 PILFNIGVILSLLFFDW--NYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGF-LLKP-RFN-FRDPGLKRFLKLFLPTTL 234 (502)
T ss_pred HHHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-cccC-cCC-CCChhHHHHHHHHHHHHH
Confidence 99998887775544444 78999988 99999999988888777665431 1111 111 235778999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 012113 270 MVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFR-IPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIILALT 348 (470)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~-~~~~i~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~ 348 (470)
++....+...++..+.+.++ ++++++|+.+.++..+... +..+++++..|.+++++|++|+++.++..+++.++...
T Consensus 235 ~~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~ 312 (502)
T TIGR01695 235 GSSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLL 312 (502)
T ss_pred HHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998866666 7899999999999988765 67899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhccccC----cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhHHHHHHHHHHHhH
Q 012113 349 EGVLLSSIAVAARGIWGYVYSN----DIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGL 424 (470)
Q Consensus 349 ~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 424 (470)
++.|+++++..+++++.+++.+ |++.++.+.+++++++++.++.+++.+..+.+++.||+|.+++.++.+. ++++
T Consensus 313 ~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i 391 (502)
T TIGR01695 313 LTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNA 391 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHH
Confidence 9999999999999999999976 5677889999999999999999999999999999999999999999986 7889
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 012113 425 PCAVYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLRT 463 (470)
Q Consensus 425 ~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 463 (470)
++++++ .+.+|..|+|+++.+++.+..++..++++|+
T Consensus 392 ~l~~~l--~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 392 LLSLLL--IFPLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999888 5567999999999999999999988877775
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=3.7e-38 Score=314.49 Aligned_cols=415 Identities=15% Similarity=0.137 Sum_probs=352.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHHHHHH
Q 012113 40 MQLAGPLVLVSFLQYSFQMISVMFVGH-LGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYRMMGVHML 118 (470)
Q Consensus 40 ~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~~ 118 (470)
.|.+.|.+++++...+.+++|+.+++| +|++++|.++.+.++..++......|++++..+.++|+.+++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999999 8999999999999998886455567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHHHHHHHHHHH
Q 012113 119 RAMLVLSLSSIPIAV-LWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLTTGISTL 197 (470)
Q Consensus 119 ~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 197 (470)
+++.+..+.+++..+ +..+.+++...+.++++. ..++++..+..++..+....+..+|+.+|+|..+..+.++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 999999999998888 777888877776666543 346788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc-----CCCcchhHHHHHHHHHHHHHHHHHHHHhCcccccc--cCCCCHHHHHHHHHHHHHHHHHHHH
Q 012113 198 VHVLSCWTLIFGF-----GFGNKGAALSNAISYWTNVIILAIYIKFSPKCEKT--WTGFSKEALENLRSFLGLGIPSALM 270 (470)
Q Consensus 198 ~~i~~~~~li~~~-----~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~ 270 (470)
+++.++..++..+ +.|+.|+++++.+++.+..+..+++.+++.+.+.+ +.+.++.+++..|+++++++|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 9987766555432 35677888999999998888877666544332211 2222234567899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCc--h---h---hHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 012113 271 VCLEFSSYEFLVLMSGLLPN--P---K---LETSVM-SISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQI 341 (470)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~--g---~---~~~~~~-~~~~~i~~~~~~~~~~i~~~~~p~~s~~~~~~~~~~~~~~~~~ 341 (470)
++...+...+|+.++++... | . +..+.| +++.++..+...+..+++++..|.+++++|++|+++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999888875420 0 1 233444 4666778888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhHHHHHHHHHH
Q 012113 342 VIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYL 421 (470)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 421 (470)
+.++...++.|+++++..+++++..++.++++ +.++++++++..++..++....+.+++.||+|..++.++.+. +
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-I 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-H
Confidence 99999999999999999999999999986543 577899999999999999999999999999999999999987 7
Q ss_pred HhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 012113 422 IGLPCAVYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLRT 463 (470)
Q Consensus 422 ~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 463 (470)
+++++++++...+.+|+.|+|+++.+++.+..++..+..+|.
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889998888544788999999999999999999998888764
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=2.4e-37 Score=294.25 Aligned_cols=338 Identities=32% Similarity=0.514 Sum_probs=310.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHHHHHHHHHHHH
Q 012113 45 PLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYRMMGVHMLRAMLVL 124 (470)
Q Consensus 45 p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 124 (470)
|.++++++..+...+|+.+++++|++++++++.+.++..+. ..+..|++++..+.++++.|++|+|+.++..++.+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999988886 88899999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHH
Q 012113 125 SLSSIPIAV-LWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLTTGISTLVHVLSC 203 (470)
Q Consensus 125 ~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 203 (470)
.+.+++.++ +..+.+++..+++.+++..+.+..++++..+..++.++..+..+.+|+.||++.....++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 999999998 8889999999888788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-hcC-CCcchhHHHHHHHHHHHHHHHHHHHHhCcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012113 204 WTLIF-GFG-FGNKGAALSNAISYWTNVIILAIYIKFSPKCEKTWTGFSKEALENLRSFLGLGIPSALMVCLEFSSYEFL 281 (470)
Q Consensus 204 ~~li~-~~~-~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 281 (470)
++++. .++ +|+.|+++++.+++.+..++..++.+|+++.+.++++..+.+++..|++++++.|..++++...+...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 98887 556 7899999999999999998888777664443333222222347789999999999999999999999999
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012113 282 VLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIILALTEGVLLSSIAVAAR 361 (470)
Q Consensus 282 ~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (470)
+.+++.++ ++++++|+++.++.++...++.+++++..|.++++++++|.++.++..+++.++.+.+++|..+++.+++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccCcHHHHHHHHHHHHHH
Q 012113 362 GIWGYVYSNDIEVIRYMASIMPVL 385 (470)
Q Consensus 362 ~~i~~l~~~~~~~~~~~~~~l~i~ 385 (470)
+++.++|++||++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999998888764
No 10
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=4.7e-36 Score=292.25 Aligned_cols=408 Identities=11% Similarity=-0.007 Sum_probs=347.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHHHHH
Q 012113 39 QMQLAGPLVLVSFLQYSFQMISVMFVGH-LGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYRMMGVHM 117 (470)
Q Consensus 39 ~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~ 117 (470)
+.|.+.....+.+...+.+++...++.| +|++++|.++..+++..++......|++++..+.++|+ ++|+++.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 6788889999999999999999999999 99999999999999998875656888999988999988 67888899999
Q ss_pred HHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHHHHHHHHHH
Q 012113 118 LRAMLVLSLSSIPIAV-LWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLTTGIST 196 (470)
Q Consensus 118 ~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 196 (470)
++++.+....+++.++ +..+.+++...+..+++. ..+..+..+..++..+.....+.+|+.+|++.++..++++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888 788889999877776652 24556666666677888899999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhCcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012113 197 LVHVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYIKFSPKCEKTWTGFSKEALENLRSFLGLGIPSALMVCLEFS 276 (470)
Q Consensus 197 ~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 276 (470)
++|+.+ +++... ..|+.|+++++++++.+..+...++.+|+++.+.+..+.+ .+++..|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPS-WDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhcc-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877 444442 2399999999999999988877776665443222211222 3477889999999999999999999
Q ss_pred HHHHHHHHHh-cCCchhhHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 012113 277 SYEFLVLMSG-LLPNPKLETSVMSISLNTISV-VFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIILALTEGVLLS 354 (470)
Q Consensus 277 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (470)
....++.+++ .++ ++++|.|+.+.|+.+. ...+..+++++..|.+++. +|.++.++..++..+....++++.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 665 8899999999999774 5789999999999999995 6789999999999999999999999
Q ss_pred HHHHHhhhhhhccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHh
Q 012113 355 SIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLPCAVYLAFVF 434 (470)
Q Consensus 355 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 434 (470)
++++++++++++++.+|+ ++.+.++++++.++.++...+......+.+.++++......+... ++++++++++ .+
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~l~i~l~~~l--i~ 383 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQF-TLLTGFAHWL--IP 383 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HH
Confidence 999999999999999876 666888999999999998888888888888888887777777765 7889999988 67
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHhccc
Q 012113 435 QFGAKGLWMGIICGSGLQAFVLLVITLRTNW 465 (470)
Q Consensus 435 ~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 465 (470)
.+|..|+++++.+++.+...+..+...++.+
T Consensus 384 ~~G~~G~a~a~~is~~~~~~~~~~~~~~~~~ 414 (416)
T PRK15099 384 LHGALGAAQAYMATYIVYFSLCCGVFLLYRR 414 (416)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999988777765443
No 11
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=6.8e-36 Score=287.89 Aligned_cols=436 Identities=44% Similarity=0.762 Sum_probs=415.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 012113 32 MIVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYR 111 (470)
Q Consensus 32 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~ 111 (470)
.+.+.|++++.+.|.++..+.+...+.++..++||+|+.++++.+++.+..+.....+..|+..+..+.++|++|+++.+
T Consensus 23 ~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~ 102 (473)
T KOG1347|consen 23 LVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFT 102 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccc
Confidence 37889999999999999999999999999999999999999999999999998778899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHHHHH
Q 012113 112 MMGVHMLRAMLVLSLSSIPIAVLWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLT 191 (470)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 191 (470)
......+++........++...++.+.+++...+++++++...+..|.++..+..+..........++|++++.....+.
T Consensus 103 ~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~ 182 (473)
T KOG1347|consen 103 ALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVI 182 (473)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhCcccccccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 012113 192 TGISTLVHVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYIKFSPKCEKTWTGFSKEALENLRSFLGLGIPSALMV 271 (470)
Q Consensus 192 ~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 271 (470)
.....++++.++++++...++|..|++++..+++.........|..... ....|..+... ++.++++++.+.|..+..
T Consensus 183 ~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~mi 260 (473)
T KOG1347|consen 183 GLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVMI 260 (473)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchhee
Confidence 9999999999999999999999999999999999999999988886544 55566666655 889999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 012113 272 CLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIILALTEGV 351 (470)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (470)
..+++.+.+...+.|.+++...+++..++..++.....+++.+++.+...++++.+|++|.+++|...+.....++.++.
T Consensus 261 clE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~ 340 (473)
T KOG1347|consen 261 CLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGA 340 (473)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999977889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhHHHHHHHHHHHhHHHHHHHH
Q 012113 352 LLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLPCAVYLA 431 (470)
Q Consensus 352 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~ 431 (470)
..+..+....+.+..+|++|+++.+...+..++++...+.++.+.+..+..++.|+++...++++.+.+++++|..+++.
T Consensus 341 ~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~ 420 (473)
T KOG1347|consen 341 SLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLG 420 (473)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHHHHHHHhccchhhh
Q 012113 432 FVFQFGAKGLWMGIICGSGLQAFVLLVITLRTNWEQEV 469 (470)
Q Consensus 432 ~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (470)
...++|..|.|.++..+..+......+...+.+|+++.
T Consensus 421 ~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~ 458 (473)
T KOG1347|consen 421 FFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQA 458 (473)
T ss_pred EEEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHH
Confidence 77889999999999999888999999999999999875
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=5e-31 Score=256.95 Aligned_cols=386 Identities=18% Similarity=0.113 Sum_probs=339.8
Q ss_pred cChh-hHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHH
Q 012113 67 LGDL-SLSSASMATSFAGVTGFSYM-LGMGSAVETFCGQAFGAKQYRMMGVHMLRAMLVLSLSSIPIAV-LWACTGKIFT 143 (470)
Q Consensus 67 lg~~-~~~~~~~~~~i~~~~~~~~~-~gl~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~ 143 (470)
+|.. +..+|..+.++..++...+. .+++++..|..++.. ++|+|+.++..++...+..+.++++++ .+++++++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654 46789999999999744444 458999999999998 888999999999999998888888888 7889999998
Q ss_pred Hc--CCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHHHHHHhhcCCC---cchhH
Q 012113 144 TL--HQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLTTGISTLVHVLSCWTLIFGFGFG---NKGAA 218 (470)
Q Consensus 144 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g---~~g~a 218 (470)
.+ +.+++..+.+.+++++..+..++.++..++.+.+|+++|+..+....++.++..++..+++.. ..| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHHH
Confidence 77 557788899999999999999999999999999999999999999998888777665555444 456 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHH
Q 012113 219 LSNAISYWTNVIILAIYIKFSPKCEKTWTGFSKEALENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVM 298 (470)
Q Consensus 219 ~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 298 (470)
+|..++..+..++.+...+|.....+...+.+ .+..|++++...|..+.....++...+++.+.+.++ +.+++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~--~G~vs~l 236 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWR---DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLG--EGSVSAL 236 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccCCCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccHHHHH
Confidence 99999999999888888876543211112222 466899999999999999999999999999999988 7789999
Q ss_pred HHHHHHHHHHH-HhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccC----cHH
Q 012113 299 SISLNTISVVF-RIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSN----DIE 373 (470)
Q Consensus 299 ~~~~~i~~~~~-~~~~~i~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~ 373 (470)
+.+.++.++.. .+..+++++..|.+++...++|.++.++..+++++..+.+.+|.++++..+++++++++.. |++
T Consensus 237 ~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~ 316 (451)
T PF03023_consen 237 NYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAE 316 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHH
Confidence 99999999977 5788999999999999999999999999999999999999999999999999999999852 566
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 012113 374 VIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLPCAVYLAFVFQFGAKGLWMGIICGSGLQA 453 (470)
Q Consensus 374 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~ 453 (470)
..+.....+++++++.++.+++.++...+++.||+|.+++.+..+. ++++.+++++ .+.+|..|.++++.++..+..
T Consensus 317 ~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l--~~~~g~~Glala~sl~~~i~~ 393 (451)
T PF03023_consen 317 DTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILL--VPFFGVAGLALATSLSAIISA 393 (451)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999999999999999999999999999999997 8899999887 677899999999999999999
Q ss_pred HHHHHHHHhc
Q 012113 454 FVLLVITLRT 463 (470)
Q Consensus 454 ~~~~~~~~~~ 463 (470)
++.++.++|+
T Consensus 394 ~~l~~~l~r~ 403 (451)
T PF03023_consen 394 LLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHH
Confidence 9999988876
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=4.9e-30 Score=245.08 Aligned_cols=421 Identities=13% Similarity=0.047 Sum_probs=360.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChh-hHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHhhhcCCccch
Q 012113 36 LKRQMQLAGPLVLVSFLQYSFQMISVMFVGH-LGDL-SLSSASMATSFAGVTGFSYMLG-MGSAVETFCGQAFGAKQYRM 112 (470)
Q Consensus 36 ~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~-~~~~~~~~~~i~~~~~~~~~~g-l~~~~~~~~s~~~~~~~~~~ 112 (470)
.+++.|.+.-.....+++.+.+++...++++ +|+. ...++..+.++.+++--.+..| ++++..|...++..++++|+
T Consensus 6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~ 85 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEA 85 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhH
Confidence 3467777788888889999999999999999 9985 5678999999999875555544 79999999999987777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHc-CC--ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHH
Q 012113 113 MGVHMLRAMLVLSLSSIPIAV-LWACTGKIFTTL-HQ--DPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPL 188 (470)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 188 (470)
.++..+........+.+..++ ..++.+++.+.. +. +++....+....++..+..++.++.....+.+++.+|+..+
T Consensus 86 ~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~ 165 (518)
T COG0728 86 ARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIP 165 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechh
Confidence 777777777576777777777 777888888444 32 23333368888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhCcccccccCCCCHHHHHHHHHHHHHHHHHH
Q 012113 189 MLTTGISTLVHVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYIKFSPKCEKTWTGFSKEALENLRSFLGLGIPSA 268 (470)
Q Consensus 189 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 268 (470)
.+..+..++.-+.....+.+.......+.+|++.++-+.+.++.+..++|.+...+....++ .+..|++.+.-.|..
T Consensus 166 a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~---~~~lk~~~~~~~p~~ 242 (518)
T COG0728 166 AFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFK---DPGLKRFLKLMLPAL 242 (518)
T ss_pred hhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCC---chhHHHHHHHHHHHH
Confidence 99999988888867666666543236788999999999999999999987653333333333 478899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 012113 269 LMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVF-RIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIILAL 347 (470)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~-~~~~~i~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~ 347 (470)
++....++...+++.+.+.+. +.+++.++.+.++.++.. .+..++++++.|.+|++..++|.++.++..+.+++.++
T Consensus 243 l~~sisQi~lli~~~iAS~l~--~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~l 320 (518)
T COG0728 243 LGVSISQINLLIDTAIASFLA--EGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTL 320 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 999999999999999999998 678999999999999988 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhccccC----cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhHHHHHHHHHHHh
Q 012113 348 TEGVLLSSIAVAARGIWGYVYSN----DIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIG 423 (470)
Q Consensus 348 ~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 423 (470)
++++|.++++..+++|+++++.. +++......+.+..++++.++..+..++...+++.+|+|.++++++++. ++|
T Consensus 321 ll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~n 399 (518)
T COG0728 321 LLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VVN 399 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HHH
Confidence 99999999999999999998843 4566788899999999999999999999999999999999999999997 899
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhcc
Q 012113 424 LPCAVYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLRTN 464 (470)
Q Consensus 424 i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 464 (470)
+.+++.+ .+.+|..|.+.++.++..++..+.++..+|+.
T Consensus 400 ~~l~~~l--~~~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 400 ILLNLLL--IPPLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred HHHHHHH--HhhccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999777 77789999999999999999988888887763
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=100.00 E-value=2.3e-29 Score=251.03 Aligned_cols=398 Identities=11% Similarity=0.071 Sum_probs=324.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHH
Q 012113 36 LKRQMQLAGPLVLVSFLQYSFQMISVMFVGH-LGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYRMMG 114 (470)
Q Consensus 36 ~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~ 114 (470)
.++..+.+.+..++++...+.+++...+++| +||+++|.++.+..+..+.......|++++.. |. +|++ +
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~~~--~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QDIS--H 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---ccCC--H
Confidence 4678888999999999999999999999999 99999999999999999976677888888743 21 1221 2
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHHHHHHH
Q 012113 115 VHMLRAMLVLSLSSIPIAV-LWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLTTG 193 (470)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 193 (470)
+..++.+.+....+++..+ ...+++++...+ ++++. ...+++..+..++..+.......++..++.+.....+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 3445666666777776666 555666665554 44432 34677778888888888899999999999999999998
Q ss_pred HHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhCcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 012113 194 ISTLVHVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYIKFSPKCEKTWTGFSKEALENLRSFLGLGIPSALMVCL 273 (470)
Q Consensus 194 ~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 273 (470)
+..+...++...+... ++|+.+.+++..++..+..+......+++. ++++ ++ +++..|++++++.|...++..
T Consensus 150 ~~~i~~~~~~i~~~~~-~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~--~~~~-~~---~~~~~k~ll~~~~~~~~~~~~ 222 (492)
T PRK10459 150 SAVVAGFTFAVVSAFF-WPGALAAILGYLVNSSVRTLLFGYFGRKIY--RPAL-HF---SLASVKPNLSFGAWQTAERII 222 (492)
T ss_pred HHHHHHHHHHHHHHHH-CCcHHHHHHHHHHHHHHHHHHHHHHhcccC--Cccc-ee---cHHHHHHHHhhhHHHHHHHHH
Confidence 8888877777665543 789999999999998877665543332221 1111 12 256789999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 012113 274 EFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFR-IPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIILALTEGVL 352 (470)
Q Consensus 274 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~-~~~~i~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (470)
..+....|..++++.. |++++|.|+.+.++.++... +...++++..|.+++. ++|.++.++.+++..++...+++|
T Consensus 223 ~~~~~~~d~~~lg~~l-g~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p 299 (492)
T PRK10459 223 NYLNTNIDTILIGRIL-GAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFP 299 (492)
T ss_pred HHHHhcCchhhhhHhh-chHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887 48999999999999887654 5556788999999886 678899999999999999999999
Q ss_pred HHHHHHHhhhhhhccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhHHHHHHHHHHHhHHHHHHHHH
Q 012113 353 LSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLPCAVYLAF 432 (470)
Q Consensus 353 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~ 432 (470)
+.+++..++++++.++.+|+ ++.+.+.++++++..++..+.......+++.||+|..++.+++.. ++.+|..+.+
T Consensus 300 ~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~-- 374 (492)
T PRK10459 300 LLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIG-- 374 (492)
T ss_pred HHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHH--
Confidence 99999999999999998765 778899999999999999999999999999999999999998886 6667876666
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 012113 433 VFQFGAKGLWMGIICGSGLQAFVLLVITLR 462 (470)
Q Consensus 433 ~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 462 (470)
.+.+|+.|+++++.+++.+......++.+|
T Consensus 375 ~~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 375 GQLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556799999999999999998888887744
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.97 E-value=6.2e-27 Score=232.98 Aligned_cols=404 Identities=17% Similarity=0.180 Sum_probs=317.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccch
Q 012113 34 VELKRQMQLAGPLVLVSFLQYSFQMISVMFVGH-LGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYRM 112 (470)
Q Consensus 34 ~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~ 112 (470)
+..+++.|.+.....+++...+.+++....++| +|++++|.++.+.++..++......|+..+..+.++++..++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 356788999999999999999999999999999 9999999999999999998777779999999999998865544444
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHHHHH
Q 012113 113 MGVH-MLRAMLVLSLSSIPIAVLWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLT 191 (470)
Q Consensus 113 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 191 (470)
.... ...........+.+.........+. ++ .....+++..+..+.........+.+|+.++.+.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 4444 4444444433333333322222221 12 22345678899999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhCcc-cccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 012113 192 TGISTLVHVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYIKFSPK-CEKTWTGFSKEALENLRSFLGLGIPSALM 270 (470)
Q Consensus 192 ~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 270 (470)
.+.+ .......+.+.. .......++..++..........+.+++++ .++...+ ..++..|+++++++|....
T Consensus 153 ~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~p~~~~ 225 (480)
T COG2244 153 IVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILR---FSLALLKELLRFGLPLLLS 225 (480)
T ss_pred HHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccC---chhHHHHHHHHHhhHHHHH
Confidence 5444 122222222221 244556677777776666665555532211 1111111 1378899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q 012113 271 VCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIILALTEG 350 (470)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (470)
+....+....|..++++.. |++++|.|+.+.++......+..+++.+..|.+++...++|.++.++..+++.++...++
T Consensus 226 ~~~~~l~~~~D~~~i~~~l-~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (480)
T COG2244 226 SLLNFLFTNIDTLLLGLFL-GPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLIS 304 (480)
T ss_pred HHHHHHHHHHHHHHHHHHh-hhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887 499999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhHHHHHHHHHHHhHHHHHHH
Q 012113 351 VLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLPCAVYL 430 (470)
Q Consensus 351 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l 430 (470)
+|..+++..+++++..++.+++ ++.+...++++++..++.++.......+++.|+++..++.+..+. ++++.+++++
T Consensus 305 ~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~l 381 (480)
T COG2244 305 IPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLL 381 (480)
T ss_pred HHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHH
Confidence 9999999999999999998866 555899999999999999999999999999999999999999997 7888888888
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 012113 431 AFVFQFGAKGLWMGIICGSGLQAFVLLVITL 461 (470)
Q Consensus 431 ~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 461 (470)
++.+|..|++.++ .+.........+..+
T Consensus 382 --i~~~g~~g~~~a~-~~~~~~~~~~~~~~~ 409 (480)
T COG2244 382 --IPRFGLIGAAIAT-ASVIALALLLFYILR 409 (480)
T ss_pred --HHhhhhhhHHHHH-HHHHHHHHHHHHHHH
Confidence 7777999999999 443333333333333
No 16
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.90 E-value=1.4e-21 Score=190.57 Aligned_cols=207 Identities=13% Similarity=0.122 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChH
Q 012113 254 LENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPY 333 (470)
Q Consensus 254 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~s~~~~~~~~~ 333 (470)
++..|++++.++|..++++.......+|+.++++++ |++++++.+++.++..+...+..+++.+..+.++|++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~-g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLD-SPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 466889999999999999999999999999999986 3789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhHH
Q 012113 334 AARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAY 413 (470)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 413 (470)
++++..++++.+++.++++..+....+.+++.++++.|+|+.+.+.+|+++..++.++..+.....+.+++.||+|.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 012113 414 VNLGAYYLIGLPCAVYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLR 462 (470)
Q Consensus 414 ~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 462 (470)
.++++. ++|+++++++.+.+++|+.|+++|+.+++.+..++..++++|
T Consensus 164 ~~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 LLVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999997 889999999987778999999999999999988776666554
No 17
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.90 E-value=1.8e-21 Score=189.86 Aligned_cols=208 Identities=24% Similarity=0.284 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChH
Q 012113 254 LENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPY 333 (470)
Q Consensus 254 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~s~~~~~~~~~ 333 (470)
++..|+++++++|..+.++.......+|+.++|+++ ++++++-+++.++..+...+..+++.+..+.++|++|+||++
T Consensus 13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 568899999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhHH
Q 012113 334 AARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAY 413 (470)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 413 (470)
++++..+++..+.++++++..+....+++++.+++.+++|+.+.+.+|+++..++.++..+.....+++++.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHH-hc-CCCchhHHHHHHHHHHHHHHHHHHHHhcc
Q 012113 414 VNLGAYYLIGLPCAVYLAFV-FQ-FGAKGLWMGIICGSGLQAFVLLVITLRTN 464 (470)
Q Consensus 414 ~~~~~~~~~~i~~~~~l~~~-~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 464 (470)
.++++. ++|+.+++++.+. .+ +|+.|+++|+.+++.+..++..++++|++
T Consensus 171 ~~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 171 ILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999998 8999999999776 35 89999999999999999999888888765
No 18
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.90 E-value=2.4e-21 Score=190.72 Aligned_cols=206 Identities=17% Similarity=0.035 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCh
Q 012113 253 ALENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKP 332 (470)
Q Consensus 253 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~s~~~~~~~~ 332 (470)
+++..|++++.++|..+.++...+...+|+.++++++ ++++++++++.++..+...+..+++++..|.++|++|++|+
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg--~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLG--PEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 4678999999999999999999999999999999997 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhH
Q 012113 333 YAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGA 412 (470)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 412 (470)
+++++..+.+..+.+.++++..+... +.+++.++|+.|||+.+.+..++++..++.++..+....++++++.||++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 161 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVM 161 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999998877765 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHH----hcCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 012113 413 YVNLGAYYLIGLPCAVYLAFV----FQFGAKGLWMGIICGSGLQAFVLLVITLR 462 (470)
Q Consensus 413 ~~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 462 (470)
+.++++. ++|+++++++... |++|+.|+++++.++.....+...+++++
T Consensus 162 ~~~~~~~-~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~ 214 (464)
T PRK00187 162 VISLAGA-VANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRR 214 (464)
T ss_pred HHHHHHH-HHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 9999997 7799999988542 35899999999999988777665555543
No 19
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.89 E-value=3.4e-21 Score=189.63 Aligned_cols=205 Identities=16% Similarity=0.117 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChH
Q 012113 254 LENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPY 333 (470)
Q Consensus 254 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~s~~~~~~~~~ 333 (470)
-+..|++++.++|..++++.......+|+.++++++ ++++|+++++.++..+...+..+++++..+.+++++|++|.+
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~ 102 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRR 102 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 455899999999999999999999999999999988 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc--CcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchh
Q 012113 334 AARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYS--NDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLG 411 (470)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 411 (470)
++++..+.++.+++.++++.+++.+.+++++..++. .|+|+.+.+.+++++..++.++..+.....+.+++.||++.+
T Consensus 103 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 182 (478)
T PRK10189 103 RARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIP 182 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHh
Confidence 999999999999999999999999999999999995 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH----hcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 012113 412 AYVNLGAYYLIGLPCAVYLAFV----FQFGAKGLWMGIICGSGLQAFVLLVITL 461 (470)
Q Consensus 412 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 461 (470)
+++++.+. ++|+++++++... +++|+.|+|+++.+++.+..++..+++.
T Consensus 183 ~~i~~~~~-~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 183 LLINGGMN-ILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHHHH-HHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999875 8899999988653 4789999999999999998887666554
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.89 E-value=3e-21 Score=189.70 Aligned_cols=208 Identities=13% Similarity=0.063 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChH
Q 012113 254 LENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPY 333 (470)
Q Consensus 254 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~s~~~~~~~~~ 333 (470)
++..|++++.++|..++++.......+|+.+++++. |++++++++++.++..+...+..+++.+..+.+++++|+||+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~-g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYV-GAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHH
Confidence 466799999999999999999999999999999973 2889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhHH
Q 012113 334 AARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAY 413 (470)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 413 (470)
+.++..+++..+.++++++..++...+++++..++..|+++.+.+.+++++..++.++..+......++++.||++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 012113 414 VNLGAYYLIGLPCAVYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLRT 463 (470)
Q Consensus 414 ~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 463 (470)
.++.+. ++|+++++++...+++|+.|+++++.+++.+..++..++++++
T Consensus 167 ~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 167 LMVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999986 8999999999877789999999999999999998877766543
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.89 E-value=1.2e-20 Score=186.19 Aligned_cols=209 Identities=18% Similarity=0.123 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC
Q 012113 252 EALENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGK 331 (470)
Q Consensus 252 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~s~~~~~~~ 331 (470)
..++..|+++++++|..++++...+...+|..++++++ ++++++++++.++..+...+..+++.+..|.+++++|++|
T Consensus 6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~ 83 (456)
T PRK01766 6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGR 83 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34678999999999999999999999999999999987 8899999999999888888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchh
Q 012113 332 PYAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLG 411 (470)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 411 (470)
.++.++..+.++.+.++++++..+++..+++++.++++.|+++.+.+..++++..++.++..+.....+++++.||++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 163 (456)
T PRK01766 84 RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT 163 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH----hcCCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 012113 412 AYVNLGAYYLIGLPCAVYLAFV----FQFGAKGLWMGIICGSGLQAFVLLVITLRT 463 (470)
Q Consensus 412 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 463 (470)
++.++++. ++++++++++... +.+|+.|+++++.+++.+..++..++.+|+
T Consensus 164 ~~~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~ 218 (456)
T PRK01766 164 MVIGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRA 218 (456)
T ss_pred HHHHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999987 7899999888542 468999999999999999999888777654
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.82 E-value=1.7e-17 Score=166.38 Aligned_cols=206 Identities=16% Similarity=0.130 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 012113 32 MIVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYR 111 (470)
Q Consensus 32 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~ 111 (470)
.++..|++++.+.|..+++....+...+|+.+.+.+|++++++|+.+.++..+....+..+++++..|.++++.+++|++
T Consensus 218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~ 297 (502)
T TIGR01695 218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWN 297 (502)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 34678999999999999999999999999988555999999999999999988634467889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCC----ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChh
Q 012113 112 MMGVHMLRAMLVLSLSSIPIAV-LWACTGKIFTTLHQ----DPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNIL 186 (470)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 186 (470)
+.++..+++......++++.++ +..+++++..++.+ +++..+.+.+++++++++.++.++.....+.+++.||+|
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~ 377 (502)
T TIGR01695 298 ELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTR 377 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCc
Confidence 9999999999999999999998 88999999987755 457788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhC
Q 012113 187 PLMLTTGISTLVHVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYIKFS 239 (470)
Q Consensus 187 ~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~ 239 (470)
.+++.+....++|+++++++++ .+|..|+++++.+++.+..++..++.+|+
T Consensus 378 ~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 378 TPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999987 56999999999999999998888777653
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.82 E-value=9.2e-17 Score=147.67 Aligned_cols=270 Identities=17% Similarity=0.172 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHHHHHH
Q 012113 40 MQLAGPLVLVSFLQYSFQMISVMFVGH-LGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYRMMGVHML 118 (470)
Q Consensus 40 ~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~~ 118 (470)
.|.+.....+++...+.+++...++.| +|++++|.++....+..++......|++++..+..++... |+++.++...
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~--~~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKD--KKELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh--hHHHHHHHHH
Confidence 577888999999999999999999999 9999999999999999987566699999999888887632 2344455555
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHH
Q 012113 119 RAMLVLSLSSIPIAVLWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLTTGISTLV 198 (470)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 198 (470)
.......+.+++....... ...+..++. .. .+........++..........+++.++.+.....++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~----~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLI----ASFFGNPSL-SL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHcCCchH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444443333332222 223333322 11 122222222257788888999999999999999999999888
Q ss_pred HHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhCcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012113 199 HVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYIKFSPKCEKTWTGFSKEALENLRSFLGLGIPSALMVCLEFSSY 278 (470)
Q Consensus 199 ~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 278 (470)
..++..+++.. +.+..+..++..++..+..++...+.+|+.+ .++.. .+++..|++++++.|..++++...+..
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR--PRFSF---FSKKFFKEILRFGLPLFLSSLLSWLYS 225 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccccc---cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777666664 4458889999999999988888888875442 22222 237889999999999999999999999
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 012113 279 EFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNE 326 (470)
Q Consensus 279 ~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~s~~ 326 (470)
..|..+++++. |++++|.|+++.++......+..++.++..|.+++.
T Consensus 226 ~~d~~ii~~~~-g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 226 QIDRLIIGYFL-GPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HhHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999988 599999999999999999999999999999999985
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.80 E-value=2.5e-17 Score=156.67 Aligned_cols=194 Identities=22% Similarity=0.222 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 012113 266 PSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIIL 345 (470)
Q Consensus 266 p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~ 345 (470)
|.++++....+...+++.++++++ ++++++|+.+.++..+...+..+++++..|.+++++|++|+|+.++..++...+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 678889999999999999999988 889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhHHHHHHHHHHHhHH
Q 012113 346 ALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLP 425 (470)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 425 (470)
...++++.+++...+++++.+++..|++..+.+..+++++.+..++.+++....+.+++.||.+...+.++.+. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999878888899999999999999999999999999999999999999999987 77888
Q ss_pred HHHHHHH-Hhc-CCCchhHHHHHHHHHHHHHHHHHHHHh
Q 012113 426 CAVYLAF-VFQ-FGAKGLWMGIICGSGLQAFVLLVITLR 462 (470)
Q Consensus 426 ~~~~l~~-~~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~ 462 (470)
+.+++.. ..+ +|+.|+++++.+++++..++..++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888754 345 679999999999999999988777765
No 25
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.77 E-value=7.5e-19 Score=148.04 Aligned_cols=162 Identities=26% Similarity=0.406 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 012113 266 PSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIIL 345 (470)
Q Consensus 266 p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~ 345 (470)
|..++++.......+++.++++++ ++++++++++.++..+...+..+++++..+.+++++|++|++++++..+++..+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 788999999999999999999996 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhHHHHHHHHHHHhHH
Q 012113 346 ALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLP 425 (470)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 425 (470)
...++++..+....+++++..+|++|+++.+.+.+++++..+..++..+.....+++++.||++..++.++.+.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 012113 426 CAVY 429 (470)
Q Consensus 426 ~~~~ 429 (470)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9875
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.77 E-value=8.8e-16 Score=150.10 Aligned_cols=206 Identities=18% Similarity=0.182 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccch
Q 012113 33 IVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYRM 112 (470)
Q Consensus 33 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~ 112 (470)
.+..|++++...|.+++....++...+|+.+.+++++..+++++.+.++.+++...+..++++...|..++...++|.++
T Consensus 194 ~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~ 273 (451)
T PF03023_consen 194 DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEE 273 (451)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 35688999999999999999999999999999999999999999999999998667788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcC----CChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhH
Q 012113 113 MGVHMLRAMLVLSLSSIPIAV-LWACTGKIFTTLH----QDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILP 187 (470)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 187 (470)
.++.+++++.....+.++.++ +..+++++++.+. .+.+..+.....+++++++.++..+...+...+.+.+|+|.
T Consensus 274 ~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~ 353 (451)
T PF03023_consen 274 FRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKT 353 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHh
Confidence 999999999999999999999 9999999998664 25666888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhCc
Q 012113 188 LMLTTGISTLVHVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYIKFSP 240 (470)
Q Consensus 188 ~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~ 240 (470)
++..++++.++|++++.++.+ .+|..|.++++.++..+..++.+..++|+.
T Consensus 354 ~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r~~ 404 (451)
T PF03023_consen 354 PVRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRRRL 404 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999998 679999999999999999999988887644
No 27
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.75 E-value=3.7e-16 Score=156.15 Aligned_cols=202 Identities=17% Similarity=0.125 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChh---------hHHHH-HHHHHHHHHHHHHHHHHHHHhHHHH
Q 012113 32 MIVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGH-LGDL---------SLSSA-SMATSFAGVTGFSYMLGMGSAVETF 100 (470)
Q Consensus 32 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~---------~~~~~-~~~~~i~~~~~~~~~~gl~~~~~~~ 100 (470)
.++.+|++++.+.|.+++++...+...+|+.++++ +++. .+|.+ +.+.++..+. ..+..+++++..|.
T Consensus 220 ~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p~ 298 (488)
T TIGR02900 220 GKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVPD 298 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999998 5322 22333 3455666665 67788999999999
Q ss_pred HHhhhcCCccchHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 012113 101 CGQAFGAKQYRMMGVHMLRAMLVLSLSSIPIAV-LWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFL 179 (470)
Q Consensus 101 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 179 (470)
++++.+++|+++.++..++...+....+++.++ +..+++++..++..++ .+.+++++.++..++..+.....+.+
T Consensus 299 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l 374 (488)
T TIGR02900 299 ISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSIL 374 (488)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888 8889999998876543 35678999999999999999999999
Q ss_pred HHccChhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 012113 180 QTQNNILPLMLTTGISTLVHVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYIKF 238 (470)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~ 238 (470)
++.||+|..++.+++..++|++++++++...++|+.|+++++.+++.+..++..++.+|
T Consensus 375 ~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 375 QGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998872226799999999999999999988888865
No 28
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.72 E-value=8.6e-18 Score=141.55 Aligned_cols=160 Identities=23% Similarity=0.340 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHHHHHHHHHHHH
Q 012113 45 PLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYRMMGVHMLRAMLVL 124 (470)
Q Consensus 45 p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 124 (470)
|..+++++..+...+|+.+++++|++++++++++.++..+. ..+..|++++..+.++|++|++|+++.++..+.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999997 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHHHHHHHHHH-HHHHHH
Q 012113 125 SLSSIPIAV-LWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLTTGIST-LVHVLS 202 (470)
Q Consensus 125 ~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~~ 202 (470)
.+.+++..+ ...+.+++..+++.|++..+.+.+|+++..+..++..+.....+++++.||++..+..++++. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 999999999 789999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHH
Q 012113 203 CWT 205 (470)
Q Consensus 203 ~~~ 205 (470)
+++
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.71 E-value=9.8e-14 Score=133.66 Aligned_cols=205 Identities=17% Similarity=0.177 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchH
Q 012113 34 VELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYRMM 113 (470)
Q Consensus 34 ~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~ 113 (470)
+..|++.+...|..++...+++..++|+.+-+.+.+...+.+..++.+.++..-.+..++++...|..||+..++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 68899999999999999999999999999999999999999999999999986688899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCC----ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHH
Q 012113 114 GVHMLRAMLVLSLSSIPIAV-LWACTGKIFTTLHQ----DPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPL 188 (470)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 188 (470)
++..+.++.+.++++++.++ +..+++|+.+.+.. +++....+...+..+.+++++..+..++...+.+++|+|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 99999999999999999999 99999999987632 45567778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhCc
Q 012113 189 MLTTGISTLVHVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYIKFSP 240 (470)
Q Consensus 189 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~ 240 (470)
+++.+++.++|+++++.+.. .+|..|.++++.++..+.+.++++..+|+.
T Consensus 389 ~~i~ii~~~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 389 MKIAIISLVVNILLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999988877 568889999999999999988888887654
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.71 E-value=4.5e-14 Score=141.12 Aligned_cols=200 Identities=14% Similarity=0.070 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 012113 33 IVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGH-LGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYR 111 (470)
Q Consensus 33 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~ 111 (470)
++..|++++++.|.+.+++...+...+|+.++++ +|++++|.|+.++++..+....+...++....|..++. ++|++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 4668999999999999999999999999999999 89999999999999988764455555778888998885 56788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHHHH
Q 012113 112 MMGVHMLRAMLVLSLSSIPIAV-LWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLML 190 (470)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 190 (470)
+.++.+++...+...++++..+ +..++++++..+.+++ +..+.+.++++++...+..+.......+++.||+|....
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 8899999999999999999888 8899999998776654 567889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 012113 191 TTGISTLVHVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYIKF 238 (470)
Q Consensus 191 ~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~ 238 (470)
.+++..+++++..+.+.. .+|+.|+++++.+++.+......++.+|
T Consensus 359 ~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888887777666 6699999999999999988888777743
No 31
>PRK15099 O-antigen translocase; Provisional
Probab=99.69 E-value=1.3e-14 Score=141.58 Aligned_cols=199 Identities=8% Similarity=-0.089 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcc
Q 012113 32 MIVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGH-LGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQY 110 (470)
Q Consensus 32 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~ 110 (470)
.++.+|++++++.|..++++...+....|+.++++ +|++++|.|+.+.++...+...+..+++++..|.+++. +|+
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~ 286 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEK 286 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCh
Confidence 46778999999999999999999999999999986 99999999999999987543778999999999999995 567
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHHH
Q 012113 111 RMMGVHMLRAMLVLSLSSIPIAV-LWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLM 189 (470)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 189 (470)
++.++..+.........+.+.++ +.+++++++.++.+++ ++.+.+++++++++..+...+......+.+.++.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~ 364 (416)
T PRK15099 287 RDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYI 364 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888899999998888888888 7799999999887764 44467889998888888888888777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 012113 190 LTTGISTLVHVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYIK 237 (470)
Q Consensus 190 ~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~ 237 (470)
...+...++++++++++++ .+|..|+++++.+++.+...+......
T Consensus 365 ~~~~~~~~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 365 LAEVSQFTLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999998 569999999999999999987776554
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.67 E-value=2.6e-13 Score=123.11 Aligned_cols=247 Identities=16% Similarity=0.159 Sum_probs=179.4
Q ss_pred HHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHHHHH
Q 012113 55 SFQMISVMFVGH-LGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYRMMGVHMLRAMLVLSLSSIPIAV 133 (470)
Q Consensus 55 ~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (470)
..+++-..+++| +|++++|.++....+..+.......|+.+.... ..++|+++.++..+.......+.+++..+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888999 999999999999999998755557777777544 22345556666666655554444433333
Q ss_pred HHHhHHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 012113 134 LWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLTTGISTLVHVLSCWTLIFGFGFG 213 (470)
Q Consensus 134 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g 213 (470)
+...+..++ .+++. ..++....+..+.........+.+++++|.+.....+....+....+...+... +.+
T Consensus 77 ---~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 147 (251)
T PF13440_consen 77 ---LAILIAYFF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLN 147 (251)
T ss_pred ---HHHHHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence 222222233 33322 234566777788889999999999999999999999999988885444444433 447
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh
Q 012113 214 NKGAALSNAISYWTNVIILAIYIKFSPKCEKTWTGFSKEALENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKL 293 (470)
Q Consensus 214 ~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~ 293 (470)
..+..++..++..+..+..+...+++. +..+ +.+..| .++.+.|..+.+.........+..+++.+. |++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~ 217 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLRRKL----RLSF----KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPE 217 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc----CCCc----hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHH
Confidence 788888888888877766665443211 1111 133334 799999999999999999999999999844 399
Q ss_pred HHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH
Q 012113 294 ETSVMSISLNTISVVF-RIPFGFGSAVSTRVSN 325 (470)
Q Consensus 294 ~~~~~~~~~~i~~~~~-~~~~~i~~~~~p~~s~ 325 (470)
++|.|+.+.++..... .+..++++...|.+++
T Consensus 218 ~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 218 AVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999888 9999999999999986
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.63 E-value=1.1e-13 Score=137.93 Aligned_cols=187 Identities=23% Similarity=0.276 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcc
Q 012113 32 MIVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGH-LGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQY 110 (470)
Q Consensus 32 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~ 110 (470)
.++..|++++.+.|...+.+...+.+.+|+.++++ +|++++|.|+.+.++.... ..+...++....|..++...++|+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 47899999999999999999999999999999999 9999999999888888886 888999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHHH
Q 012113 111 RMMGVHMLRAMLVLSLSSIPIAV-LWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLM 189 (470)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 189 (470)
++.++..++.+.+....+++..+ +..+++++...+.+++ +..+...++++++..++..+.......+++.|+.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 99999999999999999999999 8899999998776654 22367889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHH
Q 012113 190 LTTGISTLVHVLSCWTLIFGFGFGNKGAALSNAIS 224 (470)
Q Consensus 190 ~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~ 224 (470)
..+.++.++|+++++++++ .+|..|++.++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li~--~~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLIP--RFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHHH--hhhhhhHHHHH-HH
Confidence 9999999999999999999 66999999999 44
No 34
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.39 E-value=4.6e-11 Score=116.17 Aligned_cols=205 Identities=18% Similarity=0.148 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHhcCCCh
Q 012113 254 LENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISV-VFRIPFGFGSAVSTRVSNELGAGKP 332 (470)
Q Consensus 254 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~p~~s~~~~~~~~ 332 (470)
+.+.|++.+++.|..+....+.....+...++|+++ +.++++.+++.+..+. .+.+..++..+..|.++|++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 678899999999999999999999999999999999 6699999999987776 4558899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhH
Q 012113 333 YAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGA 412 (470)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 412 (470)
+.......++........+|... ++.+.+++...+..||++...+..+.++..+..+.......+...+|+.+++....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~-l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISL-LILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHH-HHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 99999999999999999999877 55666999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 012113 413 YVNLGAYYLIGLPCAVYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLR 462 (470)
Q Consensus 413 ~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 462 (470)
+...... .+++++++++.+.+++|..|++++..+++.+.......+...
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~ 229 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVL 229 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHhee
Confidence 9999997 899999999999999999999999999999988887777654
No 35
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.32 E-value=1.1e-08 Score=101.04 Aligned_cols=422 Identities=13% Similarity=-0.011 Sum_probs=248.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHhhhcCCccchHHHHH
Q 012113 40 MQLAGPLVLVSFLQYSFQMISVMFVGH-LGDLSLSSASMATSFAGV-TGFSYMLGMGSAVETFCGQAFGAKQYRMMGVHM 117 (470)
Q Consensus 40 ~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~-~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~ 117 (470)
.+.+.-.++.++...+.+++-+.++-| ++|+.+|..++=..+..- +.+..=.++..+.++.-.+...++|.++..+..
T Consensus 4 ~~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~ 83 (549)
T PF04506_consen 4 AKGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLL 83 (549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhcc
Confidence 345667888899999999987777777 999999988554444332 113344567777555433321112222333333
Q ss_pred HHHHHHHHHHHHHHHHHHH--hHH----HHHHHcCC-ChH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----cc
Q 012113 118 LRAMLVLSLSSIPIAVLWA--CTG----KIFTTLHQ-DPE---ISFHAGIYARWLIPSILPYGLLQCQHRFLQT----QN 183 (470)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~--~~~----~i~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~----~~ 183 (470)
+.......+.+.+++.+.+ ... ....+... .++ ..+.....+.+...+...-.+...+....|. ..
T Consensus 84 wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~ 163 (549)
T PF04506_consen 84 WLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKL 163 (549)
T ss_pred cccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhe
Confidence 3333333333332221111 010 01111111 111 1222333344455555555555554433444 44
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhc-CCCc-----ch-hHHHHHHHHHHHHHHHHH-HHHhCc-c---cccccCCCCH
Q 012113 184 NILPLMLTTGISTLVHVLSCWTLIFGF-GFGN-----KG-AALSNAISYWTNVIILAI-YIKFSP-K---CEKTWTGFSK 251 (470)
Q Consensus 184 ~~~~~~~~~~~~~~~~i~~~~~li~~~-~~g~-----~g-~a~a~~i~~~i~~~~~~~-~~~~~~-~---~~~~~~~~~~ 251 (470)
|.+.-........+.+..+........ +++. .+ +.++..+++....+.... +..... . .....++...
T Consensus 164 Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~ 243 (549)
T PF04506_consen 164 RVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISS 243 (549)
T ss_pred eeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhccccccc
Confidence 444444444444554444433332110 1111 11 234444555444433222 111111 1 1111111111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchhhHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH
Q 012113 252 ---EALENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGL--LPNPKLETSVMSISLNTISVVF-RIPFGFGSAVSTRVSN 325 (470)
Q Consensus 252 ---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~i~~~~~-~~~~~i~~~~~p~~s~ 325 (470)
.....-+++++.....+..++.-.+..+.+..++.. +.+ .++=|.|+++++..+++- .+...+-.+.....++
T Consensus 244 ~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk 322 (549)
T PF04506_consen 244 GNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSK 322 (549)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHH
Confidence 011124788888888899999999999999888888 664 788899999999888765 4667788888878877
Q ss_pred HhcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHHHHHHHHHHHhhHHH
Q 012113 326 ELGAGKP---------YAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQG 396 (470)
Q Consensus 326 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 396 (470)
...+++. ++..+.+...++....+++.+...-...++.+.+++.+++..-..+...+++++...++.+++.
T Consensus 323 ~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NG 402 (549)
T PF04506_consen 323 LLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAING 402 (549)
T ss_pred HhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHcc
Confidence 7665433 4466677777777777777776666667777777776654333446788999999999999999
Q ss_pred HHHHHhhccCCcchhHHHHHHHH--HHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 012113 397 VLSGVARGCGWQKLGAYVNLGAY--YLIGLPCAVYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLRT 463 (470)
Q Consensus 397 ~~~~~l~~~g~~~~~~~~~~~~~--~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 463 (470)
+...+.++...++.....+-... -++-+..++++... ++|..|..+|-++.+.++.+....+.+|.
T Consensus 403 i~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 403 ITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988876665543222 12334566777544 68999999999999999999988888764
No 36
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=4.3e-06 Score=77.64 Aligned_cols=416 Identities=13% Similarity=-0.006 Sum_probs=229.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHhhhcCCccc
Q 012113 34 VELKRQMQLAGPLVLVSFLQYSFQMISVMFVGH-LGDLSLSSASMATSFAGVT-GFSYMLGMGSAVETFCGQAFGAKQYR 111 (470)
Q Consensus 34 ~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~-~~~~~~gl~~~~~~~~s~~~~~~~~~ 111 (470)
+....-.+.+...+..+++..+.++.-+.++-| ++++.+|..++-..+..-. .+..=.++.-+ ....|..+.|
T Consensus 5 ~vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A-----~l~~gs~~~d 79 (530)
T KOG2864|consen 5 SVLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLA-----ELRIGSEPAD 79 (530)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHH-----hccCCCCCCc
Confidence 455566777778888888888888876666666 9999999987766554431 01112233333 2233333322
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhH
Q 012113 112 ---MMGVHMLRAMLVLSLSSIPIAVLWACTGKIFTTLHQDPE-ISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILP 187 (470)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 187 (470)
+..+..+.+-.+.........- +--.+.. ..|+. ..+.-..-+.+...+...-.+...+.-..|..-+.+.
T Consensus 80 ~~te~~n~~wlS~~L~~~i~~~~i~---~wl~~~~--s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~ 154 (530)
T KOG2864|consen 80 TWTEFINLLWLSVPLQTAINVACIY---FWLGFLS--SSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQL 154 (530)
T ss_pred cHHHHHHhhhhhhhHHHHHHHHHHH---HHHHHhh--ccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3334444444433333333222 1111111 11111 1111122233444455555555555556666666677
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhhc-CCCcchhHHHHHHHHHHHHH-HHHHHHHhCccccc---------ccCCCC-HH-H
Q 012113 188 LMLTTGISTLVH-VLSCWTLIFGF-GFGNKGAALSNAISYWTNVI-ILAIYIKFSPKCEK---------TWTGFS-KE-A 253 (470)
Q Consensus 188 ~~~~~~~~~~~~-i~~~~~li~~~-~~g~~g~a~a~~i~~~i~~~-~~~~~~~~~~~~~~---------~~~~~~-~~-~ 253 (470)
......+..++. ++.-.+++.+. ++++.--|+|.........+ ..+.|++.++..+. ..++.. ++ .
T Consensus 155 ~~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~ 234 (530)
T KOG2864|consen 155 RAIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERG 234 (530)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcc
Confidence 777776666666 33322333322 33444445555444333333 12333433331100 000000 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhhHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHhcCC
Q 012113 254 LENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLL--PNPKLETSVMSISLNTISVVF-RIPFGFGSAVSTRVSNELGAG 330 (470)
Q Consensus 254 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~i~~~~~-~~~~~i~~~~~p~~s~~~~~~ 330 (470)
...-++..+.-.......+.-.+....+..+++.. .+ -.+=|.|.++++..++.. ++...+-...-...++....+
T Consensus 235 ~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls-~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~ 313 (530)
T KOG2864|consen 235 IFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLS-FGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRD 313 (530)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCC-cchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhcc
Confidence 00123444444445555555556555555555422 21 335578999988777655 466677777777777777766
Q ss_pred ChHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCC
Q 012113 331 KPYAARLAV---QIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGW 407 (470)
Q Consensus 331 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~ 407 (470)
+.|+.|+.. ...++....+++...+.-...++.+..++++++-.-..+...+++++...++.+++.+..+...+.+.
T Consensus 314 ~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t 393 (530)
T KOG2864|consen 314 NQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVAT 393 (530)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhcc
Confidence 666665544 44444444444444443344455667777664432334567899999999999999999999999887
Q ss_pred cchhHHHHH---HHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 012113 408 QKLGAYVNL---GAYYLIGLPCAVYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLRT 463 (470)
Q Consensus 408 ~~~~~~~~~---~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 463 (470)
.+..-..+- +.. ++-+.+++++. -.+|..|...|-++.+.++-+....+.++.
T Consensus 394 ~~qi~~~n~~mlafS-viflilsylL~--~~~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 394 SRQIDKHNKFMLAFS-VIFLILSYLLI--RWFGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred HHHHHhcccchhHHH-HHHHHHHHHHH--HHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665544322 222 33467788884 445889999999999999988887777664
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.96 E-value=4.1e-06 Score=74.45 Aligned_cols=265 Identities=11% Similarity=-0.011 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cC-h-hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCc
Q 012113 33 IVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGH-LG-D-LSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQ 109 (470)
Q Consensus 33 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg-~-~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~ 109 (470)
....+.+.++-+|..++..+..+...+-+.-++| -. + +.++.|+++..+.-++ ..+...+.+....++- ++
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V~-----s~ 80 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFVN-----SK 80 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHhc-----ch
Confidence 3467789999999999999999988888888887 32 2 4589999999999887 7777777766555542 22
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH-H-HHHhHHHHH-HHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChh
Q 012113 110 YRMMGVHMLRAMLVLSLSSIPIA-V-LWACTGKIF-TTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNIL 186 (470)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 186 (470)
+++. +........+.+.+.+.. + .-.+...++ ..++.++++.+.++..+.++.+.-++.++....++++--++++.
T Consensus 81 rsrr-~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 81 RSRR-KAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred hhhH-HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 2222 222222222222222212 1 223444555 36688999999999999999999999999999999888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCc-chhHHHH---HHHHHHHHHH-HHHHHHhCcccccccCCCCHHHHHHHHHHH
Q 012113 187 PLMLTTGISTLVHVLSCWTLIFGFGFGN-KGAALSN---AISYWTNVII-LAIYIKFSPKCEKTWTGFSKEALENLRSFL 261 (470)
Q Consensus 187 ~~~~~~~~~~~~~i~~~~~li~~~~~g~-~g~a~a~---~i~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (470)
.....++...+..+++..+++.. ++.. ..+.+.. ..+..+-+-+ .+-+...-....+......+.+...+++++
T Consensus 160 iV~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l 238 (345)
T PF07260_consen 160 IVGSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRML 238 (345)
T ss_pred EeehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHH
Confidence 76666666555555555555532 2222 2222222 2222222211 112221111222222222223356789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchh----hHHHHHHHHHHHH
Q 012113 262 GLGIPSALMVCLEFSSYEFLVLMSGLLPNPK----LETSVMSISLNTI 305 (470)
Q Consensus 262 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~i~ 305 (470)
++.+|.+.......++..+.+.+++|..+|. +++++..+.+...
T Consensus 239 ~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvg 286 (345)
T PF07260_consen 239 KFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVG 286 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCC
Confidence 9999999999999999999999999944343 5555544444433
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.61 E-value=5.5e-06 Score=68.02 Aligned_cols=79 Identities=28% Similarity=0.299 Sum_probs=73.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 012113 159 ARWLIPSILPYGLLQCQHRFLQTQNNILPLMLTTGISTLVHVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYIKF 238 (470)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~ 238 (470)
+++++++.++.++....++.+++.||+|.....+.++.++|+++++++++ ++|..|+++++.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999988 6799999999999999999998888876
Q ss_pred C
Q 012113 239 S 239 (470)
Q Consensus 239 ~ 239 (470)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 4
No 39
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.43 E-value=4.7e-05 Score=75.69 Aligned_cols=203 Identities=10% Similarity=0.041 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcc--
Q 012113 36 LKRQMQLAGPLVLVSFLQYSFQMISVMFVGH---LGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQY-- 110 (470)
Q Consensus 36 ~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~---lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~-- 110 (470)
-++..+.+.......+...+.+--|+.++.. ...++-|.|+++.++.++++=.+...+--+.....++...++++
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 4678888888999999999999999999988 47789999999999999988888888888888888888765432
Q ss_pred -------chHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHc
Q 012113 111 -------RMMGVHMLRAMLVLSLSSIPIAV-LWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQ 182 (470)
Q Consensus 111 -------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 182 (470)
++..+.+...+.+...+++++.. ....++.++..++++.=..+.+...+++.+..+|+.+++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 33556777788888888877777 6777777887775443223345678899999999999999999999998
Q ss_pred cChhHHHHHH---HHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhC
Q 012113 183 NNILPLMLTT---GISTLVHVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYIKFS 239 (470)
Q Consensus 183 ~~~~~~~~~~---~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~ 239 (470)
-..+.....+ ...+++.+..++++... ++|..|..+|.++....-.+..+.+.++.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766554444 44456666777888875 68999999999999999888888888653
No 40
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.37 E-value=2.1e-06 Score=70.47 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 012113 382 MPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLPCAVYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITL 461 (470)
Q Consensus 382 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 461 (470)
+++++++.++.++....++.+++.||+|..++.++.+. ++++++++++ .|++|..|+++++.+++.+...+..+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~l--i~~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYIL--IPRFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999997 8999999999 78889999999999999999999999998
Q ss_pred hc
Q 012113 462 RT 463 (470)
Q Consensus 462 ~~ 463 (470)
|+
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 85
No 41
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.26 E-value=0.00023 Score=66.51 Aligned_cols=201 Identities=9% Similarity=0.043 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchH
Q 012113 37 KRQMQLAGPLVLVSFLQYSFQMISVMFVG--H-LGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYRMM 113 (470)
Q Consensus 37 k~~~~~~~p~~~~~~~~~~~~~~~~~~i~--~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~ 113 (470)
++..+.........++..+.+=-|+.++. . +.-++=|.|.+..++..+++-.+...+--....+.+|...++++|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 34445555555566777777778888887 3 56667788888888888877777888888888888888776655544
Q ss_pred ---HHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHH-
Q 012113 114 ---GVHMLRAMLVLSLSSIPIAV-LWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPL- 188 (470)
Q Consensus 114 ---~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 188 (470)
.++..+.+.+...+++++.. ....++..+.+++++.-....+...+++.+..+|+..++.+..++..+....+..
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 45667777777777776666 6667777777776644333344577999999999999999999999987764433
Q ss_pred --HHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhC
Q 012113 189 --MLTTGISTLVHVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYIKFS 239 (470)
Q Consensus 189 --~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~ 239 (470)
.....+.+++..+.+++++-.+ |..|..+|.++...+..+....+.++.
T Consensus 399 ~~n~~mlafSviflilsylL~~~~--~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIRWF--GLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHHHh--chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777788889988844 779999999988888777777776543
No 42
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.22 E-value=0.00038 Score=63.61 Aligned_cols=188 Identities=15% Similarity=0.133 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 012113 262 GLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRI-PFGFGSAVSTRVSNELGAGKPYAARLAVQ 340 (470)
Q Consensus 262 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~-~~~i~~~~~p~~s~~~~~~~~~~~~~~~~ 340 (470)
|-+......+........+...++.+.. |+++.|.|+....+.++...+ ..+++++..-..++...+ .+..++...
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l-~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYL-GPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 3344445555555555555555555554 399999999999998888775 778888888777776432 233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhHHHHHHHHH
Q 012113 341 IVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYY 420 (470)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 420 (470)
.......+..+...... .+...+.+ ++. + ...........++.........++++.++.+......+...
T Consensus 80 ~~~~~~~~~~~i~~~~~-----~~~~~~~~-~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLIL-----LIASFFGN-PSL-S--LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS- 149 (273)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHcCC-chH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 33333333322222222 22223333 322 1 11122222222577788888999999999999999888886
Q ss_pred HHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 012113 421 LIGLPCAVYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLRT 463 (470)
Q Consensus 421 ~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 463 (470)
+....+.+.+. ....+..+...+..++.++..++..++.+|+
T Consensus 150 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (273)
T PF01943_consen 150 LLSLLLILLLL-FLGSSLWGFLLGLVISSLVSLIISLFYLRRK 191 (273)
T ss_pred HHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443 2333488999999999999888888777753
No 43
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.92 E-value=0.0032 Score=56.67 Aligned_cols=164 Identities=15% Similarity=0.265 Sum_probs=106.3
Q ss_pred HHHHHhcCCchhhHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012113 281 LVLMSGLLPNPKLETSVMSISLNTISVVFRI-PFGFGSAVSTRVSNELGAGKPYAARLAVQIVIILALTEGVLLSSIAVA 359 (470)
Q Consensus 281 ~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~-~~~i~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (470)
...++.+.. |+++.|.|+....+..+...+ ..++.+...- ..++|+++.++..+.......+..+...+....
T Consensus 7 ~~~~lar~l-~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (251)
T PF13440_consen 7 FLILLARYL-GPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILAIL 80 (251)
T ss_pred HHHHHHHHC-CHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554 399999999999998888876 4444444332 234566666666666665555544444333222
Q ss_pred hhhhhhccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHhcCCCc
Q 012113 360 ARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLPCAVYLAFVFQFGAK 439 (470)
Q Consensus 360 ~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~ 439 (470)
. ...+ ++++ ...++.+..+..+...........+++.+|.+.......... +....+...+. ..+.+..
T Consensus 81 ~----~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~ 149 (251)
T PF13440_consen 81 I----AYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLL-YLGLNLW 149 (251)
T ss_pred H----HHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHH-HHHhhHH
Confidence 2 2233 3332 234456666777788889999999999999999999988886 43333333332 2233888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 012113 440 GLWMGIICGSGLQAFVLLVITL 461 (470)
Q Consensus 440 G~~~a~~~~~~~~~~~~~~~~~ 461 (470)
+..++..++.++..+......+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 150 SILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 8889988988888776666544
No 44
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.72 E-value=0.027 Score=50.81 Aligned_cols=160 Identities=12% Similarity=0.035 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCh
Q 012113 254 LENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLL-PNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKP 332 (470)
Q Consensus 254 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~s~~~~~~~~ 332 (470)
....+++.++-+|..+++....++..+.+.-+++- .+..+.+|.|+++..+.-++..+...+.++-...+.. ++
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KR 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hh
Confidence 45678999999999999999999999998888763 3323559999999999999999988888776666533 22
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhh-hhccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcch
Q 012113 333 YAARLAVQIVIILALTEGVL-LSSIAVAARGI-WGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKL 410 (470)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 410 (470)
++ ++........+.+..+. ..+..-.++.. +.+++.-||++.+.+...+.++.+..+++++.....+++.=..++..
T Consensus 82 sr-r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SR-RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 22 22222222111111111 11222223333 35566778999999999999999999999999999988886666666
Q ss_pred hHHHHHHHH
Q 012113 411 GAYVNLGAY 419 (470)
Q Consensus 411 ~~~~~~~~~ 419 (470)
....++...
T Consensus 161 V~~aSI~~v 169 (345)
T PF07260_consen 161 VGSASIADV 169 (345)
T ss_pred eehHHHHHH
Confidence 666666543
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.21 E-value=0.18 Score=46.60 Aligned_cols=339 Identities=12% Similarity=0.032 Sum_probs=182.0
Q ss_pred HHHHHHHHHhHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHhhhH
Q 012113 87 FSYMLGMGSAVETFCGQAFGAKQYRMMGVHMLRAMLVLSLSSIPIAVLWACTGKIFTTLHQDPEISFHAGIYARWLIPSI 166 (470)
Q Consensus 87 ~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 166 (470)
..+..|++...++++|++.=++|.++..........+....+..+....+ ...++.+. .|=...+...
T Consensus 74 ~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf-------~~~~~~si-----~yk~l~~~~F 141 (467)
T COG4267 74 QIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF-------FVNNQYSI-----VYKILACALF 141 (467)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh-------hhcCchhH-----HHHHHHHHHH
Confidence 44567888999999999888778777766555555544444444332111 11222211 1112334445
Q ss_pred HHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhCccccccc
Q 012113 167 LPYGLLQCQHRFLQTQNNILPLMLTTGISTLVHVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYIKFSPKCEKTW 246 (470)
Q Consensus 167 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~ 246 (470)
...+...+.-.++.+.++.|.....-.++.++.+++..++-. .+..|..++..++..+.......+..|.-+.+.+
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~~- 217 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSSRR- 217 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccc-
Confidence 556677777788999999999999999999998888877664 4889999999999988887777666543222111
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHH------HHHHHHHHHHHHHHh-----HHHH
Q 012113 247 TGFSKEALENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETS------VMSISLNTISVVFRI-----PFGF 315 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~i~~~~~~~-----~~~i 315 (470)
..++. . +..+--....+......++-.+++.+.-..++|.+-.+ -|.++.=...+...| ...+
T Consensus 218 i~FdF--L----~~~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~l 291 (467)
T COG4267 218 IGFDF--L----LYRRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLISL 291 (467)
T ss_pred cceeh--h----hhhhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeeeee
Confidence 11111 0 11111122333444455555555555433332222111 233332222222222 2223
Q ss_pred HHHHHHHHHHHh----cCCCh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHHHH
Q 012113 316 GSAVSTRVSNEL----GAGKP-------YAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPV 384 (470)
Q Consensus 316 ~~~~~p~~s~~~----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i 384 (470)
.+...+.--+.+ +.+.. ++.....++.+.-.+-+-...++.++.+++.+...+.-|+. ..+..++
T Consensus 292 ET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~----~l~lF~v 367 (467)
T COG4267 292 ETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEY----YLDLFYV 367 (467)
T ss_pred eehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH----HHHHHHH
Confidence 334444332222 22222 23333444444445556667788889999999998876542 3344555
Q ss_pred HHHHHHHhhHHHHHHHHhhccCCcchhHHHHHHHHHHHhHHHHHHHHH-HhcCCCchhHHHHHHHHHHH
Q 012113 385 LALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLPCAVYLAF-VFQFGAKGLWMGIICGSGLQ 452 (470)
Q Consensus 385 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~-~~~~g~~G~~~a~~~~~~~~ 452 (470)
-.++.-.......+-.+..-..+-+..+..+..-. +.|-.+.++... .|.+--.|...|..+...++
T Consensus 368 d~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fl-i~N~ilT~i~l~lgp~~~g~gff~a~fl~vlv~ 435 (467)
T COG4267 368 DVLGVSCQIVFMSLLNIFLYFDYRRIALELTALFL-ISNGILTFIFLELGPGYYGVGFFLASFLYVLVA 435 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH-HHhHHHHHHHHHhCccceehHHHHHHHHHHHHH
Confidence 55555444444444444445555565555555443 555556555432 23333334444444443333
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=88.65 E-value=22 Score=33.56 Aligned_cols=137 Identities=18% Similarity=0.068 Sum_probs=92.1
Q ss_pred HHhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHHHHHHHH
Q 012113 309 FRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALS 388 (470)
Q Consensus 309 ~~~~~~i~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~ 388 (470)
..++.+++....-.+|+..=+||.+.+...+.-.+.+....+..++...+ +.+|| + ...+-......
T Consensus 74 ~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf---------~~~~~--~--si~yk~l~~~~ 140 (467)
T COG4267 74 QIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF---------FVNNQ--Y--SIVYKILACAL 140 (467)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh---------hhcCc--h--hHHHHHHHHHH
Confidence 34566677777777888877777777777766666555555544443111 12222 1 11222234455
Q ss_pred HHHhhHHHHHHHHhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 012113 389 NFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGLPCAVYLAFVFQFGAKGLWMGIICGSGLQAFVLLVITLR 462 (470)
Q Consensus 389 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 462 (470)
.+..+..++....+.+.+|.+...+.-+++. ++.+.+++++- +.+..|.-++..++..........+..|
T Consensus 141 FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~-~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 141 FVGMSLVWILMIFLSGLKKYKLIVLSFFIGY-VVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6677788899999999999999888888876 66677776663 3389999999999988887776666655
No 47
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=67.49 E-value=35 Score=24.49 Aligned_cols=43 Identities=16% Similarity=0.002 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 012113 311 IPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIILALTEGVLL 353 (470)
Q Consensus 311 ~~~~i~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (470)
+..-++......+.+++.+||.+++++.-+++.+++.+-.+..
T Consensus 32 PlGi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~g 74 (82)
T PF04505_consen 32 PLGIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIIIG 74 (82)
T ss_pred hHHHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHHH
Confidence 4455566666778889999999999999999988876554443
No 48
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=48.53 E-value=63 Score=30.12 Aligned_cols=58 Identities=10% Similarity=0.106 Sum_probs=32.8
Q ss_pred CCcchhHHHHHHHHHHHhHHHHHHHHHH-------hcCCCchhHHHHHHHHHHHHHHHHHHHHhccc
Q 012113 406 GWQKLGAYVNLGAYYLIGLPCAVYLAFV-------FQFGAKGLWMGIICGSGLQAFVLLVITLRTNW 465 (470)
Q Consensus 406 g~~~~~~~~~~~~~~~~~i~~~~~l~~~-------~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 465 (470)
+.++..-..++++. + -.|++++-+.. |.....-.++......++..+..++++||++|
T Consensus 253 ~~N~~mk~LTvvt~-I-flP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 253 KMNEIMKILTVVST-I-FIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHHHH-H-HHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44445555566664 3 36777765533 11111123444455555666678888999998
No 49
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=44.25 E-value=3e+02 Score=26.54 Aligned_cols=40 Identities=10% Similarity=0.006 Sum_probs=30.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHH-HcCCC
Q 012113 109 QYRMMGVHMLRAMLVLSLSSIPIAV-LWACTGKIFT-TLHQD 148 (470)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~-~~~~~ 148 (470)
++++.+++++.+...+.+...+..+ +....-|+.. ..+.+
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~~~~~ 130 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQVYGFS 130 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4567899999999999999998887 6666666665 44443
No 50
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=43.92 E-value=2.1e+02 Score=26.74 Aligned_cols=58 Identities=14% Similarity=0.128 Sum_probs=32.8
Q ss_pred CCcchhHHHHHHHHHHHhHHHHHHHHHH-------hcCCCchhHHHHHHHHHHHHHHHHHHHHhccc
Q 012113 406 GWQKLGAYVNLGAYYLIGLPCAVYLAFV-------FQFGAKGLWMGIICGSGLQAFVLLVITLRTNW 465 (470)
Q Consensus 406 g~~~~~~~~~~~~~~~~~i~~~~~l~~~-------~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 465 (470)
+.+...-..++++. ++ +|.+++.+.+ |.....-.++..+...++.+++.+++++|++|
T Consensus 257 ~~N~imk~LTi~s~-if-lPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~~~~~~~~frrk~W 321 (322)
T COG0598 257 NQNEIMKILTIVST-IF-LPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLLALLLYLYFRRKGW 321 (322)
T ss_pred HHHHHHHHHHHHHH-HH-HhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 33444444555554 33 6777776543 22222213444555556677778888888888
No 51
>PRK11663 regulatory protein UhpC; Provisional
Probab=40.97 E-value=3.5e+02 Score=26.36 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=17.2
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 012113 434 FQFGAKGLWMGIICGSGLQAFVLLVITLR 462 (470)
Q Consensus 434 ~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 462 (470)
...|..++++......++..+......++
T Consensus 398 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 426 (434)
T PRK11663 398 EIWHWTGFFVVISIAAGISALLLLPFLNA 426 (434)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34577777777766666665544433333
No 52
>PRK09546 zntB zinc transporter; Reviewed
Probab=37.94 E-value=87 Score=29.35 Aligned_cols=51 Identities=14% Similarity=-0.074 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHH-------hcCCCchhHHHHHHHHHHHHHHHHHHHHhccc
Q 012113 413 YVNLGAYYLIGLPCAVYLAFV-------FQFGAKGLWMGIICGSGLQAFVLLVITLRTNW 465 (470)
Q Consensus 413 ~~~~~~~~~~~i~~~~~l~~~-------~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 465 (470)
..++++. +.+|++++-+.+ |..+..-.++......++..+..++++||++|
T Consensus 266 ~Ltilt~--IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 266 TMSLMAM--VFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHHH--HHHHHHHHHhhhccccCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4455554 336877775533 11111123444455556666667888898888
No 53
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=37.03 E-value=3.9e+02 Score=25.77 Aligned_cols=37 Identities=5% Similarity=-0.095 Sum_probs=31.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 012113 330 GKPYAARLAVQIVIILALTEGVLLSSIAVAARGIWGY 366 (470)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 366 (470)
.+.++.+++.+++.+++........++.....-|+..
T Consensus 88 p~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 88 PKESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667899999999999999999888888877777766
No 54
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=36.40 E-value=1.1e+02 Score=28.49 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=30.6
Q ss_pred CCcchhHHHHHHHHHHHhHHHHHHHHHHhcCCCc--------hhHHHHHHHHHHHHHHHHHHHHhccc
Q 012113 406 GWQKLGAYVNLGAYYLIGLPCAVYLAFVFQFGAK--------GLWMGIICGSGLQAFVLLVITLRTNW 465 (470)
Q Consensus 406 g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~--------G~~~a~~~~~~~~~~~~~~~~~~~~~ 465 (470)
+.++..-+.++++. +-.|..++-+.+ ++... -.++......++..+..+++++|++|
T Consensus 251 ~~N~~mk~lTv~s~--if~pptliagiy-GMNf~~mP~~~~~~g~~~~l~~~~~~~~~~~~~f~rk~W 315 (316)
T PRK11085 251 EQNRIIKIFSVVSV--VFLPPTLVASSY-GMNFEFMPELKWSFGYPGAIILMILAGLAPYLYFKRKNW 315 (316)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHhhc-ccccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 33444445555553 336777665432 11111 13344444555566667888899888
No 55
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=35.38 E-value=5.3e+02 Score=26.74 Aligned_cols=66 Identities=12% Similarity=0.014 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhHHHHH
Q 012113 349 EGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNL 416 (470)
Q Consensus 349 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 416 (470)
.+....-...+++..+..+|.+|+..............++..+- ..+...+..-.+|.|+.++.+.
T Consensus 322 ~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g--~~i~g~l~~~ir~~Kw~li~~~ 387 (599)
T PF06609_consen 322 SGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAG--AVILGLLFSKIRHIKWQLIFGS 387 (599)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHH--HHHHHHHHHHccchhHHHHHHH
Confidence 33333334456777778888777532222222222233332221 2234455555678887766654
No 56
>PF03814 KdpA: Potassium-transporting ATPase A subunit; InterPro: IPR004623 Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilise the complex. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolysing (energy providing) subunit [].; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0005886 plasma membrane
Probab=33.05 E-value=3e+02 Score=27.75 Aligned_cols=131 Identities=12% Similarity=0.003 Sum_probs=60.2
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHhCcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 012113 211 GFGNKGAALSNAISYWTNVIILAIYIKFSPKCEKTWTGFSKEALENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPN 290 (470)
Q Consensus 211 ~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 290 (470)
+++....+.+..+-+.+..++.+...+.+...+........ .+...+++....+.+++-- .+++
T Consensus 52 em~Wk~Ya~alL~fN~~~~l~~~~ll~~Q~~LPlNP~~~~~-----------~s~dlAfNTAiSFvTNTNw----Q~Ys- 115 (552)
T PF03814_consen 52 EMSWKQYALALLAFNLIGFLLLYLLLRLQGWLPLNPQGFPG-----------MSPDLAFNTAISFVTNTNW----QHYS- 115 (552)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCCC-----------CCcchhhhhhhhhhccCcc----cccC-
Confidence 44555666666666666666666666544433332222221 1122344444433332222 2233
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012113 291 PKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIILALTEGVLLSSIAV 358 (470)
Q Consensus 291 g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (470)
|+..++.++-..-+... ..+..+.+.++...+-+-+.+++.+.+-+......|..+-+.+|++++..
T Consensus 116 GEstlSylsQm~gLtvq-nFvSAAtGiAv~~AliRg~~~~~~~~iGNFwvDl~R~~l~vLLPlS~v~A 182 (552)
T PF03814_consen 116 GESTLSYLSQMAGLTVQ-NFVSAATGIAVAIALIRGFARKETKTIGNFWVDLVRSTLRVLLPLSFVFA 182 (552)
T ss_pred CcchHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 46666555443332222 22344444455555555555554444444444444444555555544443
No 57
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=29.82 E-value=5.4e+02 Score=26.23 Aligned_cols=129 Identities=12% Similarity=-0.031 Sum_probs=57.0
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHhCcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 012113 211 GFGNKGAALSNAISYWTNVIILAIYIKFSPKCEKTWTGFSKEALENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPN 290 (470)
Q Consensus 211 ~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 290 (470)
+++....+.+...-+.+..++.+...+-+...+........ .+...+++....+..++-- .+++
T Consensus 57 ~m~wk~Y~~~~l~fn~~~~~~~~~~l~~Q~~Lplnp~~~~~-----------~~~~lafnTa~SF~TNTn~----Q~Ys- 120 (559)
T PRK05482 57 EMSWKQYALALLAFNLVGFLLLYALLRLQGWLPLNPQGLPG-----------MSPDLAFNTAVSFVTNTNW----QHYS- 120 (559)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccCCC-----------CChhHHHHhHhhhhccCcc----cccc-
Confidence 34555566666666666666666666544444433322221 1122344444443332222 2233
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 012113 291 PKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVIILALTEGVLLSSI 356 (470)
Q Consensus 291 g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (470)
|+..++.++-..-+.. ......+.+.++...+-+-+.+++.+..-+......|..+-+.+|++++
T Consensus 121 gE~~lsy~sQm~~l~~-~~F~saa~G~av~~a~iRg~~~~~~~~lGNf~~D~~r~~~~vllPls~i 185 (559)
T PRK05482 121 GESTLSYLSQMAGLTV-QNFVSAATGIAVAIALIRGFARKSTGTLGNFWVDLTRSTLRVLLPLSLV 185 (559)
T ss_pred CcchHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 3655555443332222 2223444444455555555555543333333333333334444444433
No 58
>PF11830 DUF3350: Domain of unknown function (DUF3350); InterPro: IPR021785 This domain is functionally uncharacterised. This domain is found in eukaryotes. This presumed domain is typically between 50 to 64 amino acids in length.
Probab=28.40 E-value=1.2e+02 Score=19.77 Aligned_cols=35 Identities=20% Similarity=0.075 Sum_probs=18.8
Q ss_pred CcCCccccCCCCCCccccchhhHHHHHHHHHHHHHH
Q 012113 10 SLESPLIHQRPLQDDKCIDKAGMIVELKRQMQLAGP 45 (470)
Q Consensus 10 ~~~~p~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p 45 (470)
+...|...+.+.+...... .+++...+.+|+.++-
T Consensus 6 splsP~~~~~~~~~~~~~~-krt~eelR~LWrkAI~ 40 (56)
T PF11830_consen 6 SPLSPVMEEGPDSSPVEKK-KRTREELRELWRKAIH 40 (56)
T ss_pred CCCCCcccCCCCCcccccc-ccCHHHHHHHHHHHHH
Confidence 3444554444333333322 4667788888887763
No 59
>PF02592 DUF165: Uncharacterized ACR, YhhQ family COG1738; InterPro: IPR003744 This is a family of uncharacterised proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins.
Probab=25.10 E-value=3.7e+02 Score=21.65 Aligned_cols=101 Identities=14% Similarity=0.083 Sum_probs=51.0
Q ss_pred hHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012113 96 AVETFCGQAFGAKQYRMMGVHMLRAMLVLSLSSIPIAVLWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQ 175 (470)
Q Consensus 96 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 175 (470)
-..-.+++.+| ++++++....++....+..+...+...+.++- .+ ++.....-....++...+.....+++..
T Consensus 12 l~~Dii~E~yG---~~~a~~~i~~g~~~~~~~~~~~~~~~~lp~~~-~~---~~~~~~vf~~~~ri~~aS~~a~lisq~~ 84 (145)
T PF02592_consen 12 LITDIISEVYG---KKAARKAIWIGFLANLLFSLLIWIVILLPPAP-FW---QEAFESVFGPTPRIALASLIAFLISQLL 84 (145)
T ss_pred HHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-hh---HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34456677765 56666777777776666654443322221111 11 2233333344566677777766676666
Q ss_pred HHHHHHccCh----hHHHHHHHHHHHHHHHHH
Q 012113 176 HRFLQTQNNI----LPLMLTTGISTLVHVLSC 203 (470)
Q Consensus 176 ~~~l~~~~~~----~~~~~~~~~~~~~~i~~~ 203 (470)
...+...=|. |..-..+..+..+.-.+|
T Consensus 85 d~~if~~lk~~~~~r~lw~R~~~St~isq~iD 116 (145)
T PF02592_consen 85 DVYIFSKLKRKTKGRSLWLRNNGSTAISQLID 116 (145)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 6544332222 234444555555544444
No 60
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=23.27 E-value=4.3e+02 Score=21.87 Aligned_cols=52 Identities=8% Similarity=-0.007 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCc
Q 012113 320 STRVSNELGAGKPYAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSND 371 (470)
Q Consensus 320 ~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 371 (470)
.-.+-+.+++++.++.-......++....+.-|+...+....+.+.+.+..+
T Consensus 103 ~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~ 154 (183)
T PF01595_consen 103 GEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIE 154 (183)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3344566777888888888888889999999999999999999998888654
No 61
>COG4176 ProW ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]
Probab=22.96 E-value=3.2e+02 Score=24.75 Aligned_cols=82 Identities=20% Similarity=0.228 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHH--HHHHHHHHHHHHHHHHHHHHHhHH----HHHHh
Q 012113 31 GMIVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGH-LGDLSLSS--ASMATSFAGVTGFSYMLGMGSAVE----TFCGQ 103 (470)
Q Consensus 31 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~--~~~~~~i~~~~~~~~~~gl~~~~~----~~~s~ 103 (470)
.+.+.+|--+-++.|.+...+=+.++.....++++. .|...+|. ..-..+ ..+ ...+..|+..... -.++|
T Consensus 197 ~~Q~L~kVqLPlA~PtIMaGiNQtIMlALsMVVIAsMIGa~GLG~~Vl~~i~~-ldi-g~g~~aGlaIVilAIiLDRitq 274 (290)
T COG4176 197 PRQKLFKVQLPLALPTIMAGINQTIMLALSMVVIASMIGAGGLGQEVLRGIQR-LDI-GLGFEAGLAIVILAIILDRLTQ 274 (290)
T ss_pred HHHHHHHhcCcccHHHHHHhhHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHH-hhh-HHHHhhhHHHHHHHHHHHHHHH
Confidence 455677777888999999998888888888888877 67666652 111111 222 1333334333322 34567
Q ss_pred hhcCCccchHH
Q 012113 104 AFGAKQYRMMG 114 (470)
Q Consensus 104 ~~~~~~~~~~~ 114 (470)
.++++++++.+
T Consensus 275 ~~~~~~~~~~~ 285 (290)
T COG4176 275 AFGRKAKSRHR 285 (290)
T ss_pred Hhccccccccc
Confidence 77665554443
No 62
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=22.56 E-value=1e+02 Score=24.02 Aligned_cols=9 Identities=11% Similarity=-0.020 Sum_probs=3.6
Q ss_pred HHHHHHhcc
Q 012113 456 LLVITLRTN 464 (470)
Q Consensus 456 ~~~~~~~~~ 464 (470)
..|+++|++
T Consensus 84 i~y~irR~~ 92 (122)
T PF01102_consen 84 ISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHh
Confidence 333444433
No 63
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=22.45 E-value=7.8e+02 Score=24.55 Aligned_cols=57 Identities=9% Similarity=0.065 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c--ChhhHHHHHHHHHHHHHHHHHHHHH
Q 012113 35 ELKRQMQLAGPLVLVSFLQYSFQMISVMFVGH-L--GDLSLSSASMATSFAGVTGFSYMLG 92 (470)
Q Consensus 35 ~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-l--g~~~~~~~~~~~~i~~~~~~~~~~g 92 (470)
.+|+-..++.+-+..++.....+..-..+... . ++...|..-...++...+ .-+..|
T Consensus 10 s~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi-~DP~~G 69 (467)
T COG2211 10 SLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAI-TDPIMG 69 (467)
T ss_pred cHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHH-hcchhe
Confidence 56677788888888877777766665555555 4 455566666666666665 443333
No 64
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=22.29 E-value=3.3e+02 Score=20.08 Aligned_cols=51 Identities=12% Similarity=-0.029 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC-CCcchhHHHHHHHHHHHHHHHHHHHH
Q 012113 187 PLMLTTGISTLVHVLSCWTLIFGFG-FGNKGAALSNAISYWTNVIILAIYIK 237 (470)
Q Consensus 187 ~~~~~~~~~~~~~i~~~~~li~~~~-~g~~g~a~a~~i~~~i~~~~~~~~~~ 237 (470)
..-++..++.++.+++..+..+..+ ......+|+-.++-+...-+.=.+.+
T Consensus 32 ~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~ 83 (93)
T PF06946_consen 32 PNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTN 83 (93)
T ss_pred CcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHh
Confidence 3445566666677777666555432 33445555544444444444334444
No 65
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=20.57 E-value=8.3e+02 Score=24.11 Aligned_cols=73 Identities=8% Similarity=0.070 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012113 264 GIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVI 343 (470)
Q Consensus 264 ~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~s~~~~~~~~~~~~~~~~~~~ 343 (470)
+.|..++.+.--++-..-.-+.....+|+.+ +.-+.-....|++.++...+++.+|+.+..+-+|...-.+
T Consensus 379 sGpLIiSh~yLLiGcslPIWms~~p~~~~ra---------l~~laGiLalGiGDTmASiiG~r~G~~RW~~TkKTlEGT~ 449 (510)
T KOG2468|consen 379 SGPLIISHFYLLIGCSLPIWMSNSPCGGDRA---------LALLAGILALGIGDTMASIIGKRYGRIRWSGTKKTLEGTL 449 (510)
T ss_pred CCceeHHHHHHHHhcccchhccCCCCCchhh---------hhhhhhheeeccchHHHHHHhhhhcceecCCCcceeehhh
Confidence 5677776666555555555555555533333 3344455788999999999999999988888777666555
Q ss_pred HH
Q 012113 344 IL 345 (470)
Q Consensus 344 ~~ 345 (470)
-.
T Consensus 450 Af 451 (510)
T KOG2468|consen 450 AF 451 (510)
T ss_pred HH
Confidence 43
No 66
>PF14248 DUF4345: Domain of unknown function (DUF4345)
Probab=20.47 E-value=4.1e+02 Score=20.58 Aligned_cols=122 Identities=11% Similarity=-0.051 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhHHHH
Q 012113 336 RLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVN 415 (470)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 415 (470)
|+..|..+.+..+..+..++...+.+..........+.......+.+|.+.-.....++... -...-.++.+......
T Consensus 1 ~~~~~~~l~~~~l~~~~~Gl~~~~~p~~~~~~~~~~~~~~~~~~s~~R~~~G~~~g~Gl~~l--~~~~~~~~~~~al~~l 78 (124)
T PF14248_consen 1 KRILRIFLILSALVFIGIGLAYFLAPSSTAPWFGGVLANAAALDSEFRAYGGLYLGLGLLLL--WAAFKPEYRRPALRLL 78 (124)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhCcHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHHHH--HHHccHhHHHHHHHHH
Confidence 34566677777788888888888888888777754321122234445544333332222222 2222333333333333
Q ss_pred HHHHHHHhHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHHHHHHHHHh
Q 012113 416 LGAYYLIGLPCAVYLAFVFQFGA-KGLWMGIICGSGLQAFVLLVITLR 462 (470)
Q Consensus 416 ~~~~~~~~i~~~~~l~~~~~~g~-~G~~~a~~~~~~~~~~~~~~~~~~ 462 (470)
... .....+.=+.+...+ |. ....+...+.|++...+..+..+|
T Consensus 79 ~~~--~~~~~lgRlis~~~d-G~p~~~~~~~l~~Elv~~~l~~~~l~~ 123 (124)
T PF14248_consen 79 ALF--IGGGGLGRLISLALD-GPPSPFLWVALIFELVLAPLLLWWLRR 123 (124)
T ss_pred HHH--HHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 222 222344444443332 33 333456667777777766666654
No 67
>PTZ00370 STEVOR; Provisional
Probab=20.33 E-value=1.4e+02 Score=27.17 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=15.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHh---ccchhh
Q 012113 437 GAKGLWMGIICGSGLQAFVLLVITLR---TNWEQE 468 (470)
Q Consensus 437 g~~G~~~a~~~~~~~~~~~~~~~~~~---~~~~~~ 468 (470)
+..|++.-.++-..+..++.+++++| +.||.+
T Consensus 255 ~Pygiaalvllil~vvliilYiwlyrrRK~swkhe 289 (296)
T PTZ00370 255 YPYGIAALVLLILAVVLIILYIWLYRRRKNSWKHE 289 (296)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 44555544444444444444433333 358754
No 68
>PRK03612 spermidine synthase; Provisional
Probab=20.27 E-value=9.1e+02 Score=24.49 Aligned_cols=46 Identities=11% Similarity=0.065 Sum_probs=23.8
Q ss_pred HHHHHHHHHH-HHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012113 189 MLTTGISTLV-HVLSCWTLIFGFGFGNKGAALSNAISYWTNVIILAIYI 236 (470)
Q Consensus 189 ~~~~~~~~~~-~i~~~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~ 236 (470)
...+.++.++ .++..+++++ .+|..+..+....-++...++.++..
T Consensus 151 y~~ntlGa~~G~l~~~~vLlp--~lG~~~t~~~~a~l~~~~a~~~~~~~ 197 (521)
T PRK03612 151 LAADYLGALVGGLAFPFLLLP--RLGLIRTAALTGSLNLLAALVFLWLF 197 (521)
T ss_pred HhHHhHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444 4455566666 45777666555444444444444433
No 69
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.26 E-value=1.3e+02 Score=27.22 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=15.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHh---ccchhh
Q 012113 437 GAKGLWMGIICGSGLQAFVLLVITLR---TNWEQE 468 (470)
Q Consensus 437 g~~G~~~a~~~~~~~~~~~~~~~~~~---~~~~~~ 468 (470)
...|++.-.++-..+..++.+++++| +.||.+
T Consensus 259 ~Pcgiaalvllil~vvliiLYiWlyrrRK~swkhe 293 (295)
T TIGR01478 259 LPYGIAALVLIILTVVLIILYIWLYRRRKKSWKHE 293 (295)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 44555544444444444444444333 357764
No 70
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=20.25 E-value=8.1e+02 Score=23.88 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhc--cC-hhhHHHHHHHHHHHHH
Q 012113 31 GMIVELKRQMQLAGPLVLVSFLQYSFQM--ISVMFVGH--LG-DLSLSSASMATSFAGV 84 (470)
Q Consensus 31 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~--~~~~~i~~--lg-~~~~~~~~~~~~i~~~ 84 (470)
+..+..|.++.+.+|..+..+.+...+. .++...-. .. .+.+..|+..+++..+
T Consensus 237 ~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~YQ~GVF 295 (402)
T PF02487_consen 237 EKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLLYQLGVF 295 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHHHHHHHh
Confidence 3455677777788999988888876643 33333222 22 3456666666655433
No 71
>COG2060 KdpA K+-transporting ATPase, A chain [Inorganic ion transport and metabolism]
Probab=20.13 E-value=8.9e+02 Score=24.29 Aligned_cols=35 Identities=11% Similarity=-0.070 Sum_probs=23.9
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHhCcccccc
Q 012113 211 GFGNKGAALSNAISYWTNVIILAIYIKFSPKCEKT 245 (470)
Q Consensus 211 ~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~ 245 (470)
+++....+.+....+.+..++.+...+.+...+..
T Consensus 59 em~wk~Y~~a~L~fN~~~~~~~f~ll~~Q~~LPlN 93 (560)
T COG2060 59 EMSWKQYALALLAFNLLGGLLLFALLMLQGWLPLN 93 (560)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHcccCCcC
Confidence 35666777777888888888777777655544444
Done!