Query 012113
Match_columns 470
No_of_seqs 248 out of 2122
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 03:02:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012113.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012113hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 5.9E-50 2E-54 395.7 36.0 433 31-466 6-449 (460)
2 3mkt_A Multi antimicrobial ext 99.8 9.2E-20 3.1E-24 179.5 20.2 206 33-239 234-446 (460)
3 1pw4_A Glycerol-3-phosphate tr 87.0 20 0.00068 33.5 37.3 29 433-461 407-435 (451)
4 3o7q_A L-fucose-proton symport 83.3 29 0.00099 32.3 32.4 47 38-84 27-75 (438)
5 4aps_A DI-OR tripeptide H+ sym 57.4 1.3E+02 0.0044 28.3 26.5 27 433-459 445-471 (491)
6 2ks1_B Epidermal growth factor 38.2 62 0.0021 19.1 4.3 8 231-238 30-37 (44)
7 2k1k_A Ephrin type-A receptor 29.0 49 0.0017 18.9 2.6 11 216-226 15-25 (38)
8 2iub_A CORA, divalent cation t 26.1 49 0.0017 30.3 3.7 56 408-465 300-362 (363)
9 2jwa_A Receptor tyrosine-prote 23.1 73 0.0025 18.8 2.7 6 233-238 32-37 (44)
10 1pw4_A Glycerol-3-phosphate tr 11.3 8.3E+02 0.028 21.9 20.2 222 2-248 209-446 (451)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=5.9e-50 Score=395.65 Aligned_cols=433 Identities=23% Similarity=0.370 Sum_probs=399.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcc
Q 012113 31 GMIVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQY 110 (470)
Q Consensus 31 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~ 110 (470)
..++..|++++.++|.+++++...+.+.+|+.+++|+|++++|+++++.++..+. ..+..|++.+..+.++|+.|++|+
T Consensus 6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~ 84 (460)
T 3mkt_A 6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQ 84 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCh
Confidence 4678899999999999999999999999999999999999999999999998876 778899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHHHH
Q 012113 111 RMMGVHMLRAMLVLSLSSIPIAVLWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLML 190 (470)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 190 (470)
++.++.+++++.+..+.+++..++..+.+++..+++.+++..+.+..|+++.+++.++..+.....+.+|+.||++.++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (460)
T 3mkt_A 85 HKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV 164 (460)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999999998777777888888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh-c---CCCcchhHHHHHHHHHHHHHHHHHHHHhCccccc-c-cCCCCHHHHHHHHHHHHHH
Q 012113 191 TTGISTLVHVLSCWTLIFG-F---GFGNKGAALSNAISYWTNVIILAIYIKFSPKCEK-T-WTGFSKEALENLRSFLGLG 264 (470)
Q Consensus 191 ~~~~~~~~~i~~~~~li~~-~---~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 264 (470)
.++++.++|++++++++.. + ++|+.|+++++.+++.+..++..++.+++++.+. + ++++.+.+++..|+++++|
T Consensus 165 ~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (460)
T 3mkt_A 165 IGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLG 244 (460)
T ss_dssp HHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHh
Confidence 9999999999999999985 3 6899999999999999999998888876543221 1 1222234477899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012113 265 IPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGKPYAARLAVQIVII 344 (470)
Q Consensus 265 ~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~s~~~~~~~~~~~~~~~~~~~~ 344 (470)
.|..++++...+...+++.++++++ ++++|+|+++.++.++..++..+++++..|.+++++|++|.++.++..+++.+
T Consensus 245 ~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~ 322 (460)
T 3mkt_A 245 FPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLM 322 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999996 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhHHHHHHHHHHHhH
Q 012113 345 LALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNFMDGIQGVLSGVARGCGWQKLGAYVNLGAYYLIGL 424 (470)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 424 (470)
+...++++.++++.++++++.++|.+|+++.+.+.+++++++++.++.+++.+..+++++.||+|.+++.++.+.|++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 402 (460)
T 3mkt_A 323 TGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGL 402 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999989999
Q ss_pred HHHHHHHHH----hc-CCCchhHHHHHHHHHHHHHHHHHHHHhccch
Q 012113 425 PCAVYLAFV----FQ-FGAKGLWMGIICGSGLQAFVLLVITLRTNWE 466 (470)
Q Consensus 425 ~~~~~l~~~----~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~ 466 (470)
|+++++... ++ +|+.|+|+++.+++++..++..++++|+.++
T Consensus 403 ~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~~~ 449 (460)
T 3mkt_A 403 PTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQKQ 449 (460)
T ss_dssp HHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSCCS
T ss_pred HHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999655 45 8999999999999999999888887775443
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.84 E-value=9.2e-20 Score=179.46 Aligned_cols=206 Identities=15% Similarity=0.161 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccch
Q 012113 33 IVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGHLGDLSLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAFGAKQYRM 112 (470)
Q Consensus 33 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~ 112 (470)
++..|++++.++|.+++++...+...+|+.+++++|++++|+|+++.++..+. ..+..+++++..|.+++.+|++|+++
T Consensus 234 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~~~~ 312 (460)
T 3mkt_A 234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQDTKG 312 (460)
T ss_dssp TSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 45678999999999999999999999999999999999999999999999997 78899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHHHHH
Q 012113 113 MGVHMLRAMLVLSLSSIPIAV-LWACTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLT 191 (470)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 191 (470)
.++..+.+..+...++++.++ +..+++++..++..|++..+.+..++++.+++.++.++.....+.+++.||+|.++..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 392 (460)
T 3mkt_A 313 AAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHR 392 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 999999999999999999999 8899999999988888888899999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHhh----cC-CCcchhHHHHHHHHHHHHHHHHHHHHhC
Q 012113 192 TGIST-LVHVLSCWTLIFG----FG-FGNKGAALSNAISYWTNVIILAIYIKFS 239 (470)
Q Consensus 192 ~~~~~-~~~i~~~~~li~~----~~-~g~~g~a~a~~i~~~i~~~~~~~~~~~~ 239 (470)
++++. ++++++++++.+. .+ +|+.|+++++.+++.+..++..+..+|+
T Consensus 393 ~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 393 TFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988 9999999999985 45 8999999999999999888877666543
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=86.98 E-value=20 Score=33.54 Aligned_cols=29 Identities=38% Similarity=0.513 Sum_probs=17.2
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 012113 433 VFQFGAKGLWMGIICGSGLQAFVLLVITL 461 (470)
Q Consensus 433 ~~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 461 (470)
....|....++......++..++.....+
T Consensus 407 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 407 VDFFGWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777776666666666555554443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=83.34 E-value=29 Score=32.26 Aligned_cols=47 Identities=11% Similarity=0.015 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ChhhHHHHHHHHHHHHH
Q 012113 38 RQMQLAGPLVLVSFLQYSFQMISVMFVGHL--GDLSLSSASMATSFAGV 84 (470)
Q Consensus 38 ~~~~~~~p~~~~~~~~~~~~~~~~~~i~~l--g~~~~~~~~~~~~i~~~ 84 (470)
.+.....-.+...............+..++ ++.+.+.......+...
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~ 75 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYF 75 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444 45555555544444433
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=57.37 E-value=1.3e+02 Score=28.32 Aligned_cols=27 Identities=15% Similarity=0.052 Sum_probs=12.4
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHHHHH
Q 012113 433 VFQFGAKGLWMGIICGSGLQAFVLLVI 459 (470)
Q Consensus 433 ~~~~g~~G~~~a~~~~~~~~~~~~~~~ 459 (470)
..+.+....+.......++..++.+..
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (491)
T 4aps_A 445 YNAKSEVAYFSYFGLGSVVLGIVLVFL 471 (491)
T ss_dssp GGGSSTTHHHHHTHHHHHHHHHHHHHC
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554444444444444333
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=38.20 E-value=62 Score=19.14 Aligned_cols=8 Identities=0% Similarity=0.364 Sum_probs=3.4
Q ss_pred HHHHHHHh
Q 012113 231 ILAIYIKF 238 (470)
Q Consensus 231 ~~~~~~~~ 238 (470)
..+++.++
T Consensus 30 ~~~~~~RR 37 (44)
T 2ks1_B 30 GIGLFMRR 37 (44)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhhh
Confidence 33444444
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=28.96 E-value=49 Score=18.85 Aligned_cols=11 Identities=0% Similarity=-0.136 Sum_probs=4.5
Q ss_pred hhHHHHHHHHH
Q 012113 216 GAALSNAISYW 226 (470)
Q Consensus 216 g~a~a~~i~~~ 226 (470)
|..++.+++-.
T Consensus 15 GiVvG~v~gv~ 25 (38)
T 2k1k_A 15 AVIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred eeehHHHHHHH
Confidence 34444444333
No 8
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=26.13 E-value=49 Score=30.29 Aligned_cols=56 Identities=13% Similarity=0.225 Sum_probs=26.6
Q ss_pred cchhHHHHHHHHHHHhHHHHHHHHH-------HhcCCCchhHHHHHHHHHHHHHHHHHHHHhccc
Q 012113 408 QKLGAYVNLGAYYLIGLPCAVYLAF-------VFQFGAKGLWMGIICGSGLQAFVLLVITLRTNW 465 (470)
Q Consensus 408 ~~~~~~~~~~~~~~~~i~~~~~l~~-------~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 465 (470)
++..-..++++. ++ +|++++-+. +|..+..-.++......++..+..++++||++|
T Consensus 300 N~imk~LTiit~-If-lP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 300 NEVMKVLTIIAT-IF-MPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHHHHHHH-HH-HHHHHHTTSCC--------------CHHHHHHHHHHHHHHHTTTTSCC-
T ss_pred HHHHHHHHHHHH-HH-HHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344445555554 33 677665432 222222222333444455666678888888888
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=23.08 E-value=73 Score=18.84 Aligned_cols=6 Identities=50% Similarity=0.473 Sum_probs=2.6
Q ss_pred HHHHHh
Q 012113 233 AIYIKF 238 (470)
Q Consensus 233 ~~~~~~ 238 (470)
..+.+|
T Consensus 32 ~~~~RR 37 (44)
T 2jwa_A 32 GILIKR 37 (44)
T ss_dssp HHHHHH
T ss_pred Hhheeh
Confidence 344444
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=11.28 E-value=8.3e+02 Score=21.94 Aligned_cols=222 Identities=13% Similarity=0.022 Sum_probs=0.0
Q ss_pred chhhhcccCcCCccccCCCCCCccccchhhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cChh
Q 012113 2 DVEEESKSSLESPLIHQRPLQDDKCIDKAGMIVEL--------KRQMQLAGPLVLVSFLQYSFQMISVMFVGH---LGDL 70 (470)
Q Consensus 2 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--------k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~---lg~~ 70 (470)
+..++.+..+.++..+++++..+++.+.....+.. +.++...+..+............-..++.. +++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 288 (451)
T 1pw4_A 209 DTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD 288 (451)
T ss_dssp CSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHH
T ss_pred CCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh--cCCccchHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCC
Q 012113 71 SLSSASMATSFAGVTGFSYMLGMGSAVETFCGQAF--GAKQYRMMGVHMLRAMLVLSLSSIPIAV-LWACTGKIFTTLHQ 147 (470)
Q Consensus 71 ~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~ 147 (470)
+.+.......+..++ +.-....+++.+ ++ +..+.........+.. +..+. ..
T Consensus 289 ~~~~~~~~~~~~~~~--------~~~~~g~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-------~~ 343 (451)
T 1pw4_A 289 KSSWAYFLYEYAGIP--------GTLLCGWMSDKVFRGN----------RGATGVFFMTLVTIATIVYWMN-------PA 343 (451)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHTSTTC----------HHHHHHHHHHHHHHHHHHTTSC-------CT
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcCC----------chhHHHHHHHHHHHHHHHHHHh-------cc
Q ss_pred ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHccChhHHHHHHHHHHH-HHHHHHHHHHhhc-CCCcchhHHHHHHHH
Q 012113 148 DPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLTTGISTL-VHVLSCWTLIFGF-GFGNKGAALSNAISY 225 (470)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~i~~~~~li~~~-~~g~~g~a~a~~i~~ 225 (470)
.....-.....+.-...+.+..............+.+.......+....+ ...+...+.-... ..|.....+...+..
T Consensus 344 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 423 (451)
T 1pw4_A 344 GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGS 423 (451)
T ss_dssp TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhCcccccccCC
Q 012113 226 WTNVIILAIYIKFSPKCEKTWTG 248 (470)
Q Consensus 226 ~i~~~~~~~~~~~~~~~~~~~~~ 248 (470)
.+..++.....+++++.+.+..+
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~ 446 (451)
T 1pw4_A 424 ILAVILLIVVMIGEKRRHEQLLQ 446 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHhhhhhhhhHHHH
Done!