Query 012113
Match_columns 470
No_of_seqs 248 out of 2122
Neff 10.6
Searched_HMMs 13730
Date Mon Mar 25 03:02:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012113.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012113hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 74.4 25 0.0019 30.3 19.0 26 211-236 406-431 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 67.5 36 0.0026 29.2 38.4 31 433-463 404-434 (447)
3 d2iuba2 f.17.3.1 (A:286-349) M 8.4 1.8E+02 0.013 16.9 3.4 6 424-429 17-22 (64)
4 d1nkzb_ f.3.1.1 (B:) Light-har 7.5 1.8E+02 0.013 15.3 4.6 34 331-364 7-40 (41)
5 d1m56d_ f.23.8.1 (D:) Bacteria 5.7 2.4E+02 0.017 15.0 4.2 31 327-357 4-34 (42)
6 d1ppjd2 f.23.11.1 (D:196-241) 4.9 2.5E+02 0.018 15.3 2.3 13 454-466 21-33 (46)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 3.6 5.4E+02 0.039 16.2 7.8 17 257-273 70-86 (100)
8 d3dhwa1 f.58.1.1 (A:6-208) D-m 3.4 7.3E+02 0.053 17.5 5.8 41 31-71 125-166 (203)
9 d1ijdb_ f.3.1.1 (B:) Light-har 3.4 3.7E+02 0.027 13.9 4.3 32 331-362 8-39 (40)
10 d2fyuk1 f.23.15.1 (K:1-53) Sub 3.2 4.6E+02 0.034 14.6 2.6 26 101-126 2-27 (53)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=74.41 E-value=25 Score=30.26 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=13.0
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHH
Q 012113 211 GFGNKGAALSNAISYWTNVIILAIYI 236 (470)
Q Consensus 211 ~~g~~g~a~a~~i~~~i~~~~~~~~~ 236 (470)
+.|..+..+.......+..++.....
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45655555554444444444444443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=67.49 E-value=36 Score=29.17 Aligned_cols=31 Identities=35% Similarity=0.469 Sum_probs=19.3
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 012113 433 VFQFGAKGLWMGIICGSGLQAFVLLVITLRT 463 (470)
Q Consensus 433 ~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 463 (470)
....|..+.++......++..++......++
T Consensus 404 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (447)
T d1pw4a_ 404 VDFFGWDGGFMVMIGGSILAVILLIVVMIGE 434 (447)
T ss_dssp HHSSCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567877777776666666666555554443
No 3
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=8.44 E-value=1.8e+02 Score=16.94 Aligned_cols=6 Identities=17% Similarity=0.495 Sum_probs=2.9
Q ss_pred HHHHHH
Q 012113 424 LPCAVY 429 (470)
Q Consensus 424 i~~~~~ 429 (470)
+|++++
T Consensus 17 lP~t~i 22 (64)
T d2iuba2 17 MPLTFI 22 (64)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 455444
No 4
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=7.53 E-value=1.8e+02 Score=15.25 Aligned_cols=34 Identities=12% Similarity=-0.098 Sum_probs=25.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012113 331 KPYAARLAVQIVIILALTEGVLLSSIAVAARGIW 364 (470)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 364 (470)
+.|+..+....+.+....+.+..=++.+...|++
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 3577888888888888888877777666666654
No 5
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.67 E-value=2.4e+02 Score=14.96 Aligned_cols=31 Identities=6% Similarity=-0.015 Sum_probs=17.3
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012113 327 LGAGKPYAARLAVQIVIILALTEGVLLSSIA 357 (470)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (470)
.|+-|.+.-++.+.--+++..-..+.+.+.+
T Consensus 4 HG~MDi~vQEKTF~gFik~~t~~~i~~i~~l 34 (42)
T d1m56d_ 4 AGSMDITQQEKTFAGFVRMVTWAAVVIVAAL 34 (42)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665555444444333
No 6
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.93 E-value=2.5e+02 Score=15.32 Aligned_cols=13 Identities=23% Similarity=0.539 Sum_probs=7.1
Q ss_pred HHHHHHHHhccch
Q 012113 454 FVLLVITLRTNWE 466 (470)
Q Consensus 454 ~~~~~~~~~~~~~ 466 (470)
....++.+|..|.
T Consensus 21 ~~l~yy~KR~~Ws 33 (46)
T d1ppjd2 21 LPLVYAMKRHKWS 33 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 3345556666664
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.58 E-value=5.4e+02 Score=16.20 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012113 257 LRSFLGLGIPSALMVCL 273 (470)
Q Consensus 257 ~~~~~~~~~p~~~~~~~ 273 (470)
.-|+.-.-+|..+-...
T Consensus 70 ~LEiiWTviP~lILi~l 86 (100)
T d3dtub2 70 PLEIAWTIVPIVILVAI 86 (100)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45666666776664443
No 8
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=3.44 E-value=7.3e+02 Score=17.52 Aligned_cols=41 Identities=15% Similarity=0.058 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhh
Q 012113 31 GMIVELKRQMQLAGPLVLVSFLQYSFQMISVMFVGH-LGDLS 71 (470)
Q Consensus 31 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~ 71 (470)
+.+..+|-++..+.|.+++.........+....+.. +|..+
T Consensus 125 ~~q~~~~vilP~~~p~i~~~~~~~~~~~i~~~~~~~~ig~~~ 166 (203)
T d3dhwa1 125 PMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGG 166 (203)
T ss_dssp THHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTCCH
T ss_pred hhhhhHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344455556788888888888777777776666665 65543
No 9
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=3.35 E-value=3.7e+02 Score=13.88 Aligned_cols=32 Identities=9% Similarity=-0.102 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012113 331 KPYAARLAVQIVIILALTEGVLLSSIAVAARG 362 (470)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (470)
+.++..+....+.+....+.+..=++.+...|
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tP 39 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTLTP 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Confidence 35677888888888777777666555544433
No 10
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.16 E-value=4.6e+02 Score=14.63 Aligned_cols=26 Identities=12% Similarity=0.057 Sum_probs=15.0
Q ss_pred HHhhhcCCccchHHHHHHHHHHHHHH
Q 012113 101 CGQAFGAKQYRMMGVHMLRAMLVLSL 126 (470)
Q Consensus 101 ~s~~~~~~~~~~~~~~~~~~~~~~~~ 126 (470)
.++.+|.+..+.++.-+.+...++..
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~G~a 27 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLWGAV 27 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHhhhhhhhhhh
Confidence 35566666666666666665555443
Done!