BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012114
(470 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YLE|A Chain A, Crystal Structure Of The Human Spir-1 Kind Fsi Domain In
Complex With The Fsi Peptide
pdb|2YLF|A Chain A, Crystal Structure Of The Human Spir-1 Kind Domain
Length = 229
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 320 GNREKGHVEPQESLTLDDDENKVLEYKSLSEAVLDLRSVTLPTNWTAPNHKSTLC 374
G+ ++G+ +E L +D++ K+ +S + V+ L + LPT APNH +C
Sbjct: 161 GSNDEGYEAAEEGLGDEDEKRKISAIRSYRD-VMKLCAAHLPTESDAPNHYQAVC 214
>pdb|3R7G|A Chain A, Crystal Structure Of Spire Kind Domain In Complex With The
Tail Of Fmn2
pdb|3RBW|A Chain A, Crystal Structure Of Spire Kind Domain
pdb|3RBW|B Chain B, Crystal Structure Of Spire Kind Domain
pdb|3RBW|C Chain C, Crystal Structure Of Spire Kind Domain
pdb|3RBW|D Chain D, Crystal Structure Of Spire Kind Domain
Length = 220
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 320 GNREKGHVEPQESLTLDDDENKVLEYKSLSEAVLDLRSVTLPTNWTAPNHKSTLC 374
G+ ++G+ +E L +D++ K+ +S + V+ L + LPT APNH +C
Sbjct: 151 GSNDEGYEAAEEGLGDEDEKRKISAIRSYRD-VMKLCAAHLPTESDAPNHYQAVC 204
>pdb|2YDA|A Chain A, Sulfolobus Sulfataricus 2-Keto-3-Deoxygluconate Aldolase
Y103f,Y130f, A198f Variant
pdb|2YDA|B Chain B, Sulfolobus Sulfataricus 2-Keto-3-Deoxygluconate Aldolase
Y103f,Y130f, A198f Variant
Length = 294
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 128 YPIWAGEDLHDLVVKNFMSVATSLEGCVKEYLSCVEYERIPSKILTYQASDNLV 181
YP G+D+ V K + T ++ ++ + ++Y+R+ +L Y SD L+
Sbjct: 132 YPTATGKDIDAKVAKE-IGCFTGVKDTIENIIHTLDYKRLNPNMLVYSGSDMLI 184
>pdb|1W3I|A Chain A, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
pdb|1W3I|B Chain B, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
pdb|1W3I|C Chain C, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
pdb|1W3I|D Chain D, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
Length = 293
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 128 YPIWAGEDLHDLVVKNFMSVATSLEGCVKEYLSCVEYERIPSKILTYQASDNLV 181
YP G+D+ V K + T ++ ++ + ++Y+R+ +L Y SD L+
Sbjct: 131 YPTATGKDIDAKVAKE-IGCFTGVKDTIENIIHTLDYKRLNPNMLVYSGSDMLI 183
>pdb|1W37|A Chain A, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W37|B Chain B, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W37|C Chain C, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W37|D Chain D, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W3N|A Chain A, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3N|B Chain B, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3N|C Chain C, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3N|D Chain D, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3T|A Chain A, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
pdb|1W3T|B Chain B, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
pdb|1W3T|C Chain C, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
pdb|1W3T|D Chain D, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
Length = 294
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 128 YPIWAGEDLHDLVVKNFMSVATSLEGCVKEYLSCVEYERIPSKILTYQASDNLV 181
YP G+D+ V K + T ++ ++ + ++Y+R+ +L Y SD L+
Sbjct: 132 YPTATGKDIDAKVAKE-IGCFTGVKDTIENIIHTLDYKRLNPNMLVYSGSDMLI 184
>pdb|2ELV|A Chain A, Solution Structure Of The 6th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.3 bits (64), Expect = 4.4, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 285 GSGDILFEIHEAAEELQDKIDRKSYLLVNAESW 317
GS +L++ H + ++++DR ++LV+ + W
Sbjct: 4 GSSGLLYDCHICERKFKNELDRDRHMLVHGDKW 36
>pdb|1VLU|A Chain A, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
pdb|1VLU|B Chain B, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
Length = 468
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 268 AKVLRELGNKVKNMEKLGSGDILFEIHEA 296
AK R+ GN +K + G DIL++IH+A
Sbjct: 20 AKNARKAGNILKTISNEGRSDILYKIHDA 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,422,957
Number of Sequences: 62578
Number of extensions: 457850
Number of successful extensions: 1091
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1089
Number of HSP's gapped (non-prelim): 7
length of query: 470
length of database: 14,973,337
effective HSP length: 102
effective length of query: 368
effective length of database: 8,590,381
effective search space: 3161260208
effective search space used: 3161260208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)