Query 012114
Match_columns 470
No_of_seqs 250 out of 337
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 23:12:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11744 ALMT: Aluminium activ 100.0 1E-102 3E-107 810.7 31.1 361 2-440 42-406 (406)
2 KOG4711 Predicted membrane pro 100.0 5.8E-81 1.2E-85 671.9 24.2 447 2-450 124-598 (625)
3 PF04632 FUSC: Fusaric acid re 99.9 1.4E-23 3E-28 228.8 22.0 250 2-282 28-284 (650)
4 PRK10631 p-hydroxybenzoic acid 99.9 1E-21 2.2E-26 215.6 20.4 186 2-212 35-232 (652)
5 TIGR01667 YCCS_YHJK integral m 99.8 2.3E-20 5E-25 207.2 17.8 240 2-277 409-649 (701)
6 TIGR01666 YCCS hypothetical me 99.8 1E-19 2.2E-24 201.9 20.3 263 2-305 407-670 (704)
7 PRK11427 multidrug efflux syst 99.6 6.7E-15 1.5E-19 162.0 17.9 183 2-206 377-563 (683)
8 PRK11427 multidrug efflux syst 99.5 3.3E-13 7.1E-18 148.8 16.6 139 2-152 56-202 (683)
9 COG1289 Predicted membrane pro 99.5 5.8E-13 1.3E-17 147.8 16.6 237 2-276 37-280 (674)
10 PF13515 FUSC_2: Fusaric acid 99.4 1.5E-13 3.3E-18 119.9 4.3 111 2-123 15-128 (128)
11 COG1289 Predicted membrane pro 99.4 5.2E-12 1.1E-16 140.3 15.0 150 2-160 381-531 (674)
12 COG4129 Predicted membrane pro 98.9 5E-08 1.1E-12 100.6 15.3 135 4-154 38-172 (332)
13 PF06081 DUF939: Bacterial pro 98.9 8.7E-09 1.9E-13 93.8 8.6 112 2-127 30-141 (141)
14 PF12805 FUSC-like: FUSC-like 98.7 1.9E-06 4.2E-11 86.4 21.4 175 105-306 70-254 (284)
15 PF10337 DUF2422: Protein of u 98.6 9.9E-06 2.2E-10 86.6 23.8 213 13-240 59-314 (459)
16 PF10334 DUF2421: Protein of u 98.4 2E-05 4.3E-10 77.1 19.0 142 128-282 2-149 (229)
17 PF04632 FUSC: Fusaric acid re 98.0 0.0014 3E-08 72.4 24.4 136 12-152 378-514 (650)
18 TIGR01667 YCCS_YHJK integral m 97.9 0.00071 1.5E-08 76.5 19.1 246 24-304 57-308 (701)
19 TIGR01666 YCCS hypothetical me 97.8 0.0027 5.8E-08 71.9 22.2 170 106-303 129-307 (704)
20 PRK10631 p-hydroxybenzoic acid 94.1 10 0.00022 43.3 22.4 100 25-132 404-506 (652)
21 TIGR02865 spore_II_E stage II 89.2 20 0.00044 41.5 18.0 117 28-158 193-330 (764)
22 PRK12821 aspartyl/glutamyl-tRN 70.5 14 0.0003 40.3 7.4 108 17-125 98-239 (477)
23 PF12732 YtxH: YtxH-like prote 68.7 12 0.00025 30.4 5.1 47 110-157 2-48 (74)
24 PF06496 DUF1097: Protein of u 61.8 1.2E+02 0.0025 27.8 10.8 98 16-119 35-135 (144)
25 COG5336 Uncharacterized protei 57.5 22 0.00048 31.8 5.0 41 25-70 51-91 (116)
26 PF10011 DUF2254: Predicted me 53.2 37 0.00079 35.9 6.8 124 22-160 45-175 (371)
27 PF10031 DUF2273: Small integr 52.7 41 0.00088 25.9 5.2 17 24-40 8-24 (51)
28 COG4980 GvpP Gas vesicle prote 49.4 33 0.00072 30.8 4.9 49 110-159 8-56 (115)
29 PF08893 DUF1839: Domain of un 44.1 68 0.0015 33.5 6.8 77 226-306 238-318 (319)
30 PF13324 GCIP: Grap2 and cycli 39.6 4.1E+02 0.0089 26.7 13.9 56 105-160 31-86 (275)
31 PF12841 YvrJ: YvrJ protein fa 39.0 68 0.0015 23.4 4.2 31 412-442 7-37 (38)
32 TIGR00930 2a30 K-Cl cotranspor 38.3 1.7E+02 0.0037 35.0 9.9 40 24-72 149-188 (953)
33 PF07155 ECF-ribofla_trS: ECF- 36.0 2.3E+02 0.0051 25.8 8.6 21 27-47 48-68 (169)
34 PF07889 DUF1664: Protein of u 36.0 2.7E+02 0.0059 25.4 8.7 61 227-307 62-122 (126)
35 PRK11677 hypothetical protein; 32.9 1.2E+02 0.0027 27.8 6.0 49 110-158 7-56 (134)
36 PF14015 DUF4231: Protein of u 32.8 1.1E+02 0.0023 26.1 5.4 12 61-72 61-72 (112)
37 PF02411 MerT: MerT mercuric t 32.7 1.2E+02 0.0026 27.2 5.8 25 108-132 88-112 (116)
38 PF10112 Halogen_Hydrol: 5-bro 32.4 1.3E+02 0.0029 28.6 6.5 19 25-43 6-24 (199)
39 PF06645 SPC12: Microsomal sig 32.3 1.2E+02 0.0027 25.0 5.4 36 32-73 19-54 (76)
40 KOG2927 Membrane component of 31.2 96 0.0021 33.0 5.6 27 102-130 232-261 (372)
41 PF11085 YqhR: Conserved membr 31.1 1.5E+02 0.0033 28.5 6.5 13 28-40 29-41 (173)
42 PF13515 FUSC_2: Fusaric acid 30.2 69 0.0015 27.4 3.8 42 85-129 17-58 (128)
43 PF06609 TRI12: Fungal trichot 28.6 4.9E+02 0.011 29.7 11.0 53 27-82 359-411 (599)
44 PHA02682 ORF080 virion core pr 28.4 66 0.0014 31.7 3.6 44 271-315 217-260 (280)
45 PF13295 DUF4077: Domain of un 28.3 2.4E+02 0.0053 25.8 6.9 90 56-150 55-157 (175)
46 PF05433 Rick_17kDa_Anti: Glyc 27.6 49 0.0011 24.5 2.0 22 18-39 15-36 (42)
47 COG4980 GvpP Gas vesicle prote 26.9 56 0.0012 29.4 2.7 18 27-44 8-25 (115)
48 PF10158 LOH1CR12: Tumour supp 26.7 2.8E+02 0.006 25.4 7.2 66 224-304 36-103 (131)
49 PF07698 7TM-7TMR_HD: 7TM rece 26.5 1.6E+02 0.0036 27.5 6.0 26 107-132 162-187 (194)
50 PF12805 FUSC-like: FUSC-like 25.8 6.8E+02 0.015 25.1 19.8 36 100-136 69-104 (284)
51 PF06081 DUF939: Bacterial pro 25.7 2.6E+02 0.0057 25.3 6.9 32 100-131 45-76 (141)
52 COG2165 PulG Type II secretory 25.2 1.2E+02 0.0026 26.0 4.5 52 110-161 12-63 (149)
53 TIGR02849 spore_III_AD stage I 24.9 1.2E+02 0.0026 26.7 4.2 35 413-447 5-39 (101)
54 COG4129 Predicted membrane pro 24.4 8.5E+02 0.018 25.7 16.1 23 21-43 7-29 (332)
55 PHA00736 hypothetical protein 22.5 2.4E+02 0.0051 23.2 5.2 67 20-92 5-72 (79)
56 COG5547 Small integral membran 22.3 3.6E+02 0.0079 21.7 6.0 22 20-41 4-25 (62)
57 COG2178 Predicted RNA-binding 22.1 1.4E+02 0.0031 29.3 4.7 60 253-312 15-74 (204)
58 KOG4514 Uncharacterized conser 21.6 1.9E+02 0.004 28.3 5.2 65 251-315 125-192 (222)
59 PTZ00391 transport protein par 20.9 76 0.0017 30.3 2.5 27 413-439 1-27 (168)
60 COG4709 Predicted membrane pro 20.2 7.8E+02 0.017 24.2 9.1 28 101-128 138-168 (195)
No 1
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=100.00 E-value=1.3e-102 Score=810.67 Aligned_cols=361 Identities=53% Similarity=0.870 Sum_probs=335.0
Q ss_pred eEEeEeeEEEeecCchhHHhhhhhhhHHHHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHhhccCccc-cc
Q 012114 2 FIIRLPDAKTLHFCAGATLSKGFNRGLGTLSAGGLALAMAELSELAGE-WEEVAIIISIFTIGFIATFAKLYPTMKP-YE 79 (470)
Q Consensus 2 fWivlTVvVVmeptvGaTl~Kg~~R~lGTllGg~lal~v~~ia~~~g~-~~~~~i~i~vFi~g~~as~~r~~p~ik~-y~ 79 (470)
+|+++||+|||+||+|+|+.||+||++||++||++|+++++++..+|+ .+++++++++|+++++++|+|++|.+|+ ||
T Consensus 42 ~WavlTVvvvfe~tvGatl~KG~nR~lGTl~aG~La~~~~~la~~~g~~~~~~~i~~~vFi~~~~atf~r~~P~~k~ryd 121 (406)
T PF11744_consen 42 MWAVLTVVVVFEPTVGATLSKGLNRGLGTLLAGILAFGVSWLASLSGDPGEPIVIGISVFIIGFIATFVRFIPKIKARYD 121 (406)
T ss_pred hHHHhhhHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHhchhhhhhhh
Confidence 699999999999999999999999999999999999999999999997 7889999999999999999999999997 99
Q ss_pred hhhhhHhhhhhhhhcccCCchhHHHHHHHHHHHHHHhHHHHhhhheeeccccchhHHHHHHHHhHHHHHHHHHHhhhhhc
Q 012114 80 YGFRVFLLTYCYILVSGYRTREFVETAVTRFLLIALGAGVCLVVNICIYPIWAGEDLHDLVVKNFMSVATSLEGCVKEYL 159 (470)
Q Consensus 80 YG~~vf~LTf~LV~ls~y~~~~~~~~A~~Rv~~I~IGi~ial~VS~lIfP~wAg~~L~~~v~~~~~~lA~~le~~v~~Y~ 159 (470)
||++||++||++|++++|++++++++|++|+++|++|+++|++||++|||+|||++||++++++++++|+++++|+++|+
T Consensus 122 Yg~~Vf~LTf~lV~vs~yr~~~~~~~A~~R~~~I~iGv~i~l~vsi~IfPvwAg~~Lh~~~a~~leklA~~le~~v~~y~ 201 (406)
T PF11744_consen 122 YGGLVFILTFCLVAVSGYRTDEFLMLAVWRLLTIVIGVAICLLVSIFIFPVWAGEDLHKLTAKNLEKLANSLEGCVEEYF 201 (406)
T ss_pred HHHHHHHHHHHhheeecCCcchHHHHHHHHHHHHHHHHHHHHHHHHheeechhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccc-cchHHHHhhHHHhhccchHhhhccccccCCCCCCCCCCCCChhhHHhHHHHHHHHHHHHHHh
Q 012114 160 SCVEYERIPSKILTYQA-SDNLVYSGYRSAVESTSQEDALVGFAIWEPPHGPYKKFKYPWKNYVKVSGALRHCAFMVMAL 238 (470)
Q Consensus 160 ~~~e~~~~~~~~l~~~~-~~~~~~~~y~s~L~s~a~~EsL~~~A~wEp~hgrf~~~~~Pw~~Y~kvg~~lR~ca~~v~AL 238 (470)
++.+++ +.+++. ++|+++++|+++|+|++++|+|+++|+|||+||||+ |+|||+||+|||+++|||||+|+||
T Consensus 202 ~~~~~~-----~~~~~~~~~~~~~~~yk~vl~Sk~~eesL~~~A~WEP~HG~f~-f~~Pw~~Y~kig~~lR~cay~v~AL 275 (406)
T PF11744_consen 202 KCSEDE-----ILDYQQESDDPLLQGYKSVLNSKSQEESLANFARWEPPHGRFR-FRHPWKQYLKIGALLRHCAYCVEAL 275 (406)
T ss_pred hcchhc-----ccccccccccHHHHhhhHHhCCcccHHHHhhhhhhcccccCCc-cCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 987665 233443 578999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hhhhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC-CccHHHHHHHHHHHHHHhhhhcccccccccc
Q 012114 239 HGCILSEIQAPAERRQVFRQELQRVGYAGAKVLRELGNKVKNMEKLGS-GDILFEIHEAAEELQDKIDRKSYLLVNAESW 317 (470)
Q Consensus 239 ~gcl~seiqap~~~r~~~~~e~~~l~~e~a~vLreLa~si~~m~~~~~-~~~~~~~~~A~~~Lq~~i~~~~~ll~~~~~~ 317 (470)
|||+++|||+|+++|++|++||++++.|++|+|||||++||+|+|+++ .+++.++|+|+|+||++||++||||+||++-
T Consensus 276 ~gcl~seiq~p~~~r~~~~~~~~~~~~e~~kvLrel~~~ik~m~~~~~~~~~~~~~~~A~~~Lq~~l~~~~~ll~~s~~~ 355 (406)
T PF11744_consen 276 HGCLNSEIQAPPELRQKFQEECTRVSSESAKVLRELSNSIKTMTKSSSIDDHVANLKEAAEDLQSKLDSQSYLLLNSESP 355 (406)
T ss_pred HhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHhCCccccCCchh
Confidence 999999999999999999999999999999999999999999999999 4667999999999999999999999998750
Q ss_pred cccccCCCCCCCccccCCccchhhhhhhcchhhhhhhcccccCCCCCCCCCCCCCCCCCCCcccccccCCccccccCCCC
Q 012114 318 EIGNREKGHVEPQESLTLDDDENKVLEYKSLSEAVLDLRSVTLPTNWTAPNHKSTLCPDTPTKMEKQISWPARLSFDTDS 397 (470)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (470)
. . +. .++ .
T Consensus 356 ~---------------------~----------------~~----------------------~~~-------------~ 363 (406)
T PF11744_consen 356 E---------------------R----------------SF----------------------LRP-------------Q 363 (406)
T ss_pred h---------------------h----------------hh----------------------ccc-------------c
Confidence 0 0 00 000 0
Q ss_pred CccccccchhhccccchHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 012114 398 VPHLEKSKTYESASALSLATFSSLLIEFVARLHNVVDSFEELS 440 (470)
Q Consensus 398 ~~~~~~~~~~e~~~al~latfaSLLiE~varl~~vv~~veeL~ 440 (470)
+..+++.+++|+++|||+|||||||||+|+|+|+|||+|||||
T Consensus 364 ~~~~~~~~~~~~~~~l~lat~aSlLie~v~r~~~iv~~v~eLa 406 (406)
T PF11744_consen 364 SSKEAEWTSYELLEALPLATFASLLIEFVARLENIVEAVEELA 406 (406)
T ss_pred ccccccccchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 1112345789999999999999999999999999999999996
No 2
>KOG4711 consensus Predicted membrane protein [General function prediction only]
Probab=100.00 E-value=5.8e-81 Score=671.95 Aligned_cols=447 Identities=47% Similarity=0.719 Sum_probs=370.7
Q ss_pred eEEeEeeEEEeecCchhHHhhhhhhhHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHHHHhhccCccccch
Q 012114 2 FIIRLPDAKTLHFCAGATLSKGFNRGLGTLSAGGLALAMAELSELAG-EWEEVAIIISIFTIGFIATFAKLYPTMKPYEY 80 (470)
Q Consensus 2 fWivlTVvVVmeptvGaTl~Kg~~R~lGTllGg~lal~v~~ia~~~g-~~~~~~i~i~vFi~g~~as~~r~~p~ik~y~Y 80 (470)
.|+++||+||+|+++|+|+.||+||.+||+.||.+|+++.+++..+| .++++++++++|+.++.++|++|+|++|+|+|
T Consensus 124 ~wai~tvvvv~e~svgatl~kglnr~v~tL~ag~l~l~~~~la~~~g~~~~~i~~~~~vF~~~~~~ty~~f~p~iK~y~y 203 (625)
T KOG4711|consen 124 LWAILTVVVVFEFSVGATLSKGLNRAVGTLSAGGLALGIERLAEISGKDNESIFIGITVFIAGAKATYSLFFPYIKAYEY 203 (625)
T ss_pred hheeeEEEEEEEeccchHHHHhHHHHHHHhhhhhhhhhhHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhchhhhccch
Confidence 59999999999999999999999999999999999999999999999 57789999999999999999999999999999
Q ss_pred hhhhHhhhhhhhhcccCCchhHHHHHHHHHHHHHHhHHHHhhhheeeccccchhHHHHHHHHhHHHHHHHHHH------h
Q 012114 81 GFRVFLLTYCYILVSGYRTREFVETAVTRFLLIALGAGVCLVVNICIYPIWAGEDLHDLVVKNFMSVATSLEG------C 154 (470)
Q Consensus 81 G~~vf~LTf~LV~ls~y~~~~~~~~A~~Rv~~I~IGi~ial~VS~lIfP~wAg~~L~~~v~~~~~~lA~~le~------~ 154 (470)
|++||++|||+|.+++|+.++++++|+.|+++|.+|..+|++|++|+||+|||+|||+.+++|++.++.++|+ |
T Consensus 204 ~~lIf~ltf~l~~vs~~r~~~~~~~a~~Rl~~i~~g~~vcliis~f~~PiwAgedlh~l~~~n~~~~a~sleg~~~~~~~ 283 (625)
T KOG4711|consen 204 GFLIFILTFCLVEVSGYRSDYFLELALQRLLLIVIGGGVCLIISRFIFPIWAGEDLHKLDSKNFKNLASSLEGRKFTASC 283 (625)
T ss_pred hhhHHHHHhhhheecccchhHHHHHHHHHHHHHhhCcceeEEEEEEEeeccchhhhhhhhhhhhhhhhhhhcchhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 6
Q ss_pred hhhhccccccccccccccccccc-chHHHHhhHHHhhccchHhhhccccccCCCCCCCCCCCCChhhHHhHHHHHHHHHH
Q 012114 155 VKEYLSCVEYERIPSKILTYQAS-DNLVYSGYRSAVESTSQEDALVGFAIWEPPHGPYKKFKYPWKNYVKVSGALRHCAF 233 (470)
Q Consensus 155 v~~Y~~~~e~~~~~~~~l~~~~~-~~~~~~~y~s~L~s~a~~EsL~~~A~wEp~hgrf~~~~~Pw~~Y~kvg~~lR~ca~ 233 (470)
.++|..+.++..++++...++++ +++.++||+++|+|++++|+|+++|.|||+||+++.|+|||++|+|+|+++|||||
T Consensus 284 ~~~~y~~~~~i~~~s~~~~~~s~~~~~~~~Gy~svl~s~s~ee~l~~~A~Wep~hG~~~~f~~Pw~~Yvk~~~~~r~ca~ 363 (625)
T KOG4711|consen 284 FNGEYFCVEKIEILSIPTFYKSAAWYPLYNGYWSVLQSKSQEERLANFAIWEPPHGPYFTFRHPWKNYVKLGGALRQCAF 363 (625)
T ss_pred hcchheeehhhhhcchhhhhhhcchhhhhcchhHHhhhhhHHHHHHHHheecCCCCCceeeecchhHeeehhhHHHHHHH
Confidence 66666677766777877888754 77899999999999999999999999999999666699999999999999999999
Q ss_pred HHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC-cc-HHHHHHHHHHHHHHhhhhcccc
Q 012114 234 MVMALHGCILSEIQAPAERRQVFRQELQRVGYAGAKVLRELGNKVKNMEKLGSG-DI-LFEIHEAAEELQDKIDRKSYLL 311 (470)
Q Consensus 234 ~v~AL~gcl~seiqap~~~r~~~~~e~~~l~~e~a~vLreLa~si~~m~~~~~~-~~-~~~~~~A~~~Lq~~i~~~~~ll 311 (470)
+|+||||||.+++|+|.++|.+++.+|++|+.+++++|++++.++++|+++++. ++ ...++.|+++||++||++|+++
T Consensus 364 ~i~alh~~l~s~~qap~~~~~~~~~~l~rva~e~~kvl~~~~~~~~~~~~~s~~~~~~~~~~~~A~~~L~~~ids~p~l~ 443 (625)
T KOG4711|consen 364 IIMALHGCLLSEIQAPRDLRNKFRLTLRRVAIEISKVLRPFRAKVELMYKLSSALDILLQYVTVADRELQRNIDSNPTLL 443 (625)
T ss_pred HHHHhcccccccccCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHHHHHhhccCcchHh
Confidence 999999999999999999999999999999999999999999999999999983 54 5899999999999999999999
Q ss_pred cccccccccccCCCCCCC--ccccCCccchhhhh------hhcchhhhhhhcccccCCCCCCCCCCCCCCCCCC-Cc-cc
Q 012114 312 VNAESWEIGNREKGHVEP--QESLTLDDDENKVL------EYKSLSEAVLDLRSVTLPTNWTAPNHKSTLCPDT-PT-KM 381 (470)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~ 381 (470)
+++++|...|.....+.. .+++ .+++..+.. -++.++..... +....+..|+.........+.+ .. ..
T Consensus 444 v~~~~~~~~~~~~~~~~~~~~~~e-~~~~~~~~~ek~~~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 521 (625)
T KOG4711|consen 444 VNSESWISSNLQAARELLNEVNHE-PNLKGTFPVEKYNELIHKLLSLGILL-EVGTRFGNWDDAKLKETLRRLRKDSVSS 521 (625)
T ss_pred hcccchhhhhHHHHHHHhhhhccc-hhhcccccchhHHHHHHHhhcchhhh-hccccccchhhHHHHHhhcccccchhhh
Confidence 999999776654333211 1110 000011110 00111111100 1222233343322111111100 11 14
Q ss_pred ccccCCccccccCCCCCc---ccc----ccchhhccccchHHHHHH-HHHHHHHHhhHHHHHHHHHHhhcCCCCCcc
Q 012114 382 EKQISWPARLSFDTDSVP---HLE----KSKTYESASALSLATFSS-LLIEFVARLHNVVDSFEELSEKANFKEPVE 450 (470)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~---~~~----~~~~~e~~~al~latfaS-LLiE~varl~~vv~~veeL~~~A~Fk~~~~ 450 (470)
....+||+..++.++.++ .+. ..+.+|++++|++|+|+| ||+|+|||+|++|++++||+.+|+|++++.
T Consensus 522 ~~~~~~~s~n~~~s~~~~~~~~p~~~~~~~~~~~~se~l~~a~fas~ll~~~~arl~~vv~~~~el~~~a~f~~~~~ 598 (625)
T KOG4711|consen 522 VNAVSYISSNSIRSKNPIPRVVPILSRATSKSYESSEALNLATFASNLLLEFVARLDNVVSAVEELSDKANFKEYDS 598 (625)
T ss_pred hhhhhhhhhcccccCCCCccccccccccccccccCchhcCcccccchHHHHHHHHHhhhhhhhhhhhhhhhhccccc
Confidence 556778877666543221 122 348999999999999999 999999999999999999999999998753
No 3
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.91 E-value=1.4e-23 Score=228.85 Aligned_cols=250 Identities=16% Similarity=0.198 Sum_probs=176.8
Q ss_pred eEEeEeeEEEeecCchhHHhhhhhhhHHHHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHhhccCccccch
Q 012114 2 FIIRLPDAKTLHFCAGATLSKGFNRGLGTLSAGGLALAMAELSELAGE-WEEVAIIISIFTIGFIATFAKLYPTMKPYEY 80 (470)
Q Consensus 2 fWivlTVvVVmeptvGaTl~Kg~~R~lGTllGg~lal~v~~ia~~~g~-~~~~~i~i~vFi~g~~as~~r~~p~ik~y~Y 80 (470)
+|.++||+||++|+.|+++.||++|++||++|+++|+++..+. ++ ...+++++++|+ ++|+.+..+.++. ++|
T Consensus 28 ~WA~~tv~iV~qp~~G~~~~k~~~R~~GT~iGa~~~~~lv~~~---~~~p~l~~~~lal~i-~~c~~~~~~~~~~--~~y 101 (650)
T PF04632_consen 28 YWAAMTVFIVSQPSSGASLSKGLYRLIGTLIGAAAGLLLVALF---PQSPLLFLLALALWI-GLCLYLSLLDRNF--RSY 101 (650)
T ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCHHHHHHHHHHHH-HHHHHHHHhcCCc--chH
Confidence 6999999999999999999999999999999999999984332 33 222445677777 4555555545443 899
Q ss_pred hhhhHhhhhhhhhcccCCc-hhHHHHHHHHHHHHHHhHHHHhhhheeeccccchhHHHHHHHHhHHHHHHHHHHhhhhhc
Q 012114 81 GFRVFLLTYCYILVSGYRT-REFVETAVTRFLLIALGAGVCLVVNICIYPIWAGEDLHDLVVKNFMSVATSLEGCVKEYL 159 (470)
Q Consensus 81 G~~vf~LTf~LV~ls~y~~-~~~~~~A~~Rv~~I~IGi~ial~VS~lIfP~wAg~~L~~~v~~~~~~lA~~le~~v~~Y~ 159 (470)
|+.++++|.+||++++..+ +++|+++++|+.+|++|++|+++|+.++||.++++.|++.+.+.+..+++.+...+++.-
T Consensus 102 ~~~lag~T~~iv~~~~~~~p~~~f~~a~~R~~ei~iGi~~a~~v~~l~~P~~~~~~l~~~l~~~l~~~~~~~~~~l~~~~ 181 (650)
T PF04632_consen 102 AFMLAGYTAAIVALPAVGNPEQVFDLALWRVLEILIGILCATLVSMLFFPQRARRQLRRRLAQRLADLARWLAALLDGDP 181 (650)
T ss_pred HHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999765 578999999999999999999999999999999999999999999999998876665221
Q ss_pred ccccccccccccccccccchHHHHhhHHHhhccchHhhhccccccCCCCCCCCCCCCChhhHHhHHHHHHHHHHHHHHhh
Q 012114 160 SCVEYERIPSKILTYQASDNLVYSGYRSAVESTSQEDALVGFAIWEPPHGPYKKFKYPWKNYVKVSGALRHCAFMVMALH 239 (470)
Q Consensus 160 ~~~e~~~~~~~~l~~~~~~~~~~~~y~s~L~s~a~~EsL~~~A~wEp~hgrf~~~~~Pw~~Y~kvg~~lR~ca~~v~AL~ 239 (470)
. .+. ..++..++..+.++++.++.+|.+..|.+ ...+..+-..+..+-..+.+++
T Consensus 182 ~-----------------~~~---~~~~l~~~~~~l~~~~~~~~~e~~~~~~~-----~~~~~~l~~~~~~l~~~~~~l~ 236 (650)
T PF04632_consen 182 D-----------------PAA---ERRRLARDIAALESLLSHARYESPRLRRR-----RRRLRALQARLLRLLALLRSLA 236 (650)
T ss_pred c-----------------cch---HHHHHHHHHHHHHHHHhhccccCchhHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111 55566666778899999999999865544 2333343334444444444444
Q ss_pred hhhhcccCCChHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhcc
Q 012114 240 GCILSEIQAPAERRQVFRQELQRVGY-----AGAKVLRELGNKVKNME 282 (470)
Q Consensus 240 gcl~seiqap~~~r~~~~~e~~~l~~-----e~a~vLreLa~si~~m~ 282 (470)
..+...-..+......+++-+.+++. +.......|-..+...+
T Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~la~~~~~~~~~~~~~~l~~~~~~~~ 284 (650)
T PF04632_consen 237 RRLAALPDAPDAARLELAALLEELAAAAQRADLDQAAAALRQRIAALR 284 (650)
T ss_pred HHhhcccccchhhHHHHHHHHHHHhhcccccccHHHHHHHHHHHhhcc
Confidence 44433323332222224444444444 23334444444454433
No 4
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=99.88 E-value=1e-21 Score=215.58 Aligned_cols=186 Identities=16% Similarity=0.143 Sum_probs=155.8
Q ss_pred eEEeEeeEEEe---------ecCchhHHhhhhhhhHHHHHHHHHHHHHHHHHHhcCchhH--HHHHHHHHHHHHHHHHHh
Q 012114 2 FIIRLPDAKTL---------HFCAGATLSKGFNRGLGTLSAGGLALAMAELSELAGEWEE--VAIIISIFTIGFIATFAK 70 (470)
Q Consensus 2 fWivlTVvVVm---------eptvGaTl~Kg~~R~lGTllGg~lal~v~~ia~~~g~~~~--~~i~i~vFi~g~~as~~r 70 (470)
+|..+||+||+ ||..|+++.||++|++||++|++.|+++..+. ++ +| +.+++++|+ |+|+....
T Consensus 35 ~WA~~Tv~iv~~~~~~~~g~qp~~G~v~~K~~~Ri~GTliGa~~~l~l~~~f---~~-~p~l~~l~l~lWi-g~c~~~s~ 109 (652)
T PRK10631 35 RWAVLTAAIVAAGPAFAAGGEPFSGAIRYRGMLRIIGTFIGCIAALVIIIAT---IR-APLLMILLCCIWA-GFCTWISS 109 (652)
T ss_pred cHHHHHHHHHHcccccccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHh---cC-ChHHHHHHHHHHH-HHHHHHHH
Confidence 69999999999 99999999999999999999999999984432 32 33 345677787 56665554
Q ss_pred hccCccccchhhhhHhhhhhhhhcccCCc-hhHHHHHHHHHHHHHHhHHHHhhhheeeccccchhHHHHHHHHhHHHHHH
Q 012114 71 LYPTMKPYEYGFRVFLLTYCYILVSGYRT-REFVETAVTRFLLIALGAGVCLVVNICIYPIWAGEDLHDLVVKNFMSVAT 149 (470)
Q Consensus 71 ~~p~ik~y~YG~~vf~LTf~LV~ls~y~~-~~~~~~A~~Rv~~I~IGi~ial~VS~lIfP~wAg~~L~~~v~~~~~~lA~ 149 (470)
.+.. +++|++.++++|.+||++++..+ +.+|++|+.|+.+|+||++|+.+|+.+++|...++++++.+.+.+.+...
T Consensus 110 l~r~--~~sY~~~LaGyTa~iI~~~~~~~p~~~f~~A~~R~~Ei~iGi~ca~lv~~l~~P~~~~~~l~~~l~~~~~~~~~ 187 (652)
T PRK10631 110 LVRV--ENSYAWGLAGYTALIIVITIQPEPLLTPQFAVERCSEIVIGIVCAILADLLFSPRSIKQEVDRELDSLLVAQYQ 187 (652)
T ss_pred hccc--hhHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHH
Confidence 4433 28999999999999999998775 56899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcccccccccccccccccccchHHHHhhHHHhhccchHhhhccccccCCCCCCCC
Q 012114 150 SLEGCVKEYLSCVEYERIPSKILTYQASDNLVYSGYRSAVESTSQEDALVGFAIWEPPHGPYK 212 (470)
Q Consensus 150 ~le~~v~~Y~~~~e~~~~~~~~l~~~~~~~~~~~~y~s~L~s~a~~EsL~~~A~wEp~hgrf~ 212 (470)
.++.+..+ .+ ++.......+++.+....|.++..+.||.++.|.+
T Consensus 188 ~~~~~l~~----~~--------------~~~~~~~~~~L~~di~~le~lr~~~~~e~~~~r~~ 232 (652)
T PRK10631 188 LMQLCIKH----GD--------------KEEVDKAWGDLVRRTTALNGMRSNLMMESSRWQRA 232 (652)
T ss_pred HHHHHhcc----Cc--------------cchhhHHHHHHHHHHHHHHHHHHhhccCCcchhhH
Confidence 88877542 11 12355677888888999999999999999988766
No 5
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=99.84 E-value=2.3e-20 Score=207.18 Aligned_cols=240 Identities=16% Similarity=0.158 Sum_probs=162.4
Q ss_pred eEEeEeeEEEeecCchhHHhhhhhhhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhhccCccccchh
Q 012114 2 FIIRLPDAKTLHFCAGATLSKGFNRGLGTLSAGGLALAMAELSELAGEWEEVAIIISIFTIGFIATFAKLYPTMKPYEYG 81 (470)
Q Consensus 2 fWivlTVvVVmeptvGaTl~Kg~~R~lGTllGg~lal~v~~ia~~~g~~~~~~i~i~vFi~g~~as~~r~~p~ik~y~YG 81 (470)
|||++|+++||+|+.|+|..|+++|++||++|+++|+++.++... .. ..+.+.++ .+++..+ +....||
T Consensus 409 yWi~lTv~~V~qP~~~~T~~R~~~Ri~GTl~G~llg~~l~~l~p~---~~-~~l~l~v~-~~~~~~~------~~~~~Y~ 477 (701)
T TIGR01667 409 YWILLTTLFVCQPNYGATRLRLVQRIIGTVVGLVIGVALHFLIPS---LE-GQLTLMVI-TGVAFFA------FRSKNYG 477 (701)
T ss_pred hHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc---HH-HHHHHHHH-HHHHHHH------HHHhhHH
Confidence 799999999999999999999999999999999999987555321 11 11222221 1222111 1225677
Q ss_pred hhhHhhhhhhhhcccCCchhHHHHHHHHHHHHHHhHHHHhhhheeeccccchhHHHHHHHHhHHHHHHHHHHhhhhhccc
Q 012114 82 FRVFLLTYCYILVSGYRTREFVETAVTRFLLIALGAGVCLVVNICIYPIWAGEDLHDLVVKNFMSVATSLEGCVKEYLSC 161 (470)
Q Consensus 82 ~~vf~LTf~LV~ls~y~~~~~~~~A~~Rv~~I~IGi~ial~VS~lIfP~wAg~~L~~~v~~~~~~lA~~le~~v~~Y~~~ 161 (470)
+.++++|..++........+.++.+..|+++|+||++++++++.+|||.|++.++++.+++.++..+++++..+++|.+.
T Consensus 478 ~a~~fiT~~vll~~~l~~~~~~~~a~~Rl~DTliG~~iA~~~~~llwP~w~~~~l~~~~~~al~a~~~yl~~il~~~~~~ 557 (701)
T TIGR01667 478 WATVFITLLVLLCFNLLGLDGEQYILPRLIDTLIGCLIAWGAVSYLWPDWQSRLLRKMLHDALEANQRYLRLILSQYPQG 557 (701)
T ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 77888887665554433334568899999999999999999999999999999999999999999999999999988642
Q ss_pred ccccccccccccccccchHHHHh-hHHHhhccchHhhhccccccCCCCCCCCCCCCChhhHHhHHHHHHHHHHHHHHhhh
Q 012114 162 VEYERIPSKILTYQASDNLVYSG-YRSAVESTSQEDALVGFAIWEPPHGPYKKFKYPWKNYVKVSGALRHCAFMVMALHG 240 (470)
Q Consensus 162 ~e~~~~~~~~l~~~~~~~~~~~~-y~s~L~s~a~~EsL~~~A~wEp~hgrf~~~~~Pw~~Y~kvg~~lR~ca~~v~AL~g 240 (470)
.. ++..|+. =++.-++.+..++..+.+.-||++.|. .++.-..+-...+.+...+.||..
T Consensus 558 ~~--------------~~~~yr~aRr~a~~a~a~l~~~~~~m~~EP~~~~~-----~~~~~~~ll~~~~~ll~~isal~a 618 (701)
T TIGR01667 558 KP--------------DDLAYRIARRNAHNTDAALSTTLSNMMQEPAFNSH-----YLEDGFRLLTLSHTLLSYISALGA 618 (701)
T ss_pred CC--------------chhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchh-----hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 21 1111221 112223455667777888899986543 334334444566666777777653
Q ss_pred hhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012114 241 CILSEIQAPAERRQVFRQELQRVGYAGAKVLRELGNK 277 (470)
Q Consensus 241 cl~seiqap~~~r~~~~~e~~~l~~e~a~vLreLa~s 277 (470)
. +..+..| +. .....+.+..++++|..+...
T Consensus 619 ~-r~~~~~~-~~----~~~~~~~~~~~~~~l~~~~~~ 649 (701)
T TIGR01667 619 H-RERLLNP-EL----AAELLQACEIVAKAIQRCQAR 649 (701)
T ss_pred c-ccccCCh-hH----HHHHHHHHHHHHHHHHHHHHh
Confidence 2 1222222 23 333445556666777776666
No 6
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=99.84 E-value=1e-19 Score=201.93 Aligned_cols=263 Identities=17% Similarity=0.141 Sum_probs=177.1
Q ss_pred eEEeEeeEEEeecCchhHHhhhhhhhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhhccCccccchh
Q 012114 2 FIIRLPDAKTLHFCAGATLSKGFNRGLGTLSAGGLALAMAELSELAGEWEEVAIIISIFTIGFIATFAKLYPTMKPYEYG 81 (470)
Q Consensus 2 fWivlTVvVVmeptvGaTl~Kg~~R~lGTllGg~lal~v~~ia~~~g~~~~~~i~i~vFi~g~~as~~r~~p~ik~y~YG 81 (470)
+||++|+++||+|+.|+|..|+.+|++||++|+++|+++.++.... . ..+.+.+.. +.+.. .+....|+
T Consensus 407 yWi~LTv~~V~qP~~~~T~~R~~~Ri~GTllG~~lg~~ll~l~p~~---~-~~l~liv~~-~~l~~------~~~~~~Y~ 475 (704)
T TIGR01666 407 YWILLTTLFVCQPNYSATKVRLRQRIIGTLLGVVIGSPLLYFNPSL---E-LQLVLVVLT-GVLFF------AFRSNNYS 475 (704)
T ss_pred chHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH---H-HHHHHHHHH-HHHHH------HHHHHhHH
Confidence 7999999999999999999999999999999999999986654321 1 111111111 11111 11225666
Q ss_pred hhhHhhhhhhhhcccCCchhHHHHHHHHHHHHHHhHHHHhhhheeeccccchhHHHHHHHHhHHHHHHHHHHhhhhhccc
Q 012114 82 FRVFLLTYCYILVSGYRTREFVETAVTRFLLIALGAGVCLVVNICIYPIWAGEDLHDLVVKNFMSVATSLEGCVKEYLSC 161 (470)
Q Consensus 82 ~~vf~LTf~LV~ls~y~~~~~~~~A~~Rv~~I~IGi~ial~VS~lIfP~wAg~~L~~~v~~~~~~lA~~le~~v~~Y~~~ 161 (470)
+.++++|..++++..... +.++.+..|+++|+||++++++++.+|||.|++.++++.+++.++..+++++..+++|...
T Consensus 476 ~a~~fiT~~vll~~~l~g-~~~~~~~~Rl~dTlIG~~iAl~a~~li~P~w~~~~l~~~~~~al~a~~~Yl~~vl~~~~~g 554 (704)
T TIGR01666 476 FATFFITLLVLLCFNVLG-EGAAVLLPRLLDTLIGCAIAWAAVSYIWPDWQYLQLDKVSHQALRANAVYLLHIISQYQFG 554 (704)
T ss_pred HHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHhHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 666778887776655433 3568899999999999999999999999999999999999999999999999999888642
Q ss_pred ccccccccccccccccchHHHHh-hHHHhhccchHhhhccccccCCCCCCCCCCCCChhhHHhHHHHHHHHHHHHHHhhh
Q 012114 162 VEYERIPSKILTYQASDNLVYSG-YRSAVESTSQEDALVGFAIWEPPHGPYKKFKYPWKNYVKVSGALRHCAFMVMALHG 240 (470)
Q Consensus 162 ~e~~~~~~~~l~~~~~~~~~~~~-y~s~L~s~a~~EsL~~~A~wEp~hgrf~~~~~Pw~~Y~kvg~~lR~ca~~v~AL~g 240 (470)
.. |+..|+. =|..-++.+..++...-..-||++-| -.|+.--.+-...+.....|-||..
T Consensus 555 ~~--------------~~~~yr~aRR~a~~~~a~l~~~~~~m~~EP~~~~-----~~~~~~~~ll~~~~~llsyisaLg~ 615 (704)
T TIGR01666 555 KS--------------DDLKYRIARRNAHNYDAALSTTVSNMNNEPVKYK-----AYLQKGFRLLKLNHSLLSYISALGA 615 (704)
T ss_pred Cc--------------chhHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch-----hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 21 1212211 12222344555666677778898554 3455555555566666666777654
Q ss_pred hhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccHHHHHHHHHHHHHHhh
Q 012114 241 CILSEIQAPAERRQVFRQELQRVGYAGAKVLRELGNKVKNMEKLGSGDILFEIHEAAEELQDKID 305 (470)
Q Consensus 241 cl~seiqap~~~r~~~~~e~~~l~~e~a~vLreLa~si~~m~~~~~~~~~~~~~~A~~~Lq~~i~ 305 (470)
. +..+..+ .+...+.+.+..+.+.|..++..... .++.+-++.+.+.++|..+++
T Consensus 616 ~-r~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~ 670 (704)
T TIGR01666 616 H-RDRLKNL-----QQTAQFLDGFYPVAKKLIYTLEHIEE----IPEAIFNQQQESIETLELRKQ 670 (704)
T ss_pred C-HhhCCCh-----HHHHHHHHHHHHHHHHHHHHhhcccc----cccchhhhHHHHHHHHHHHHh
Confidence 3 2233332 23334556677777788777776652 223444566666666666653
No 7
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.63 E-value=6.7e-15 Score=161.97 Aligned_cols=183 Identities=14% Similarity=0.036 Sum_probs=126.0
Q ss_pred eEEeEeeEEEeecCchhHHhhhhhhhHHHHHHHHHHHHHHHHHHhcCchhH-HHHHH-HHHHHHHHHHHHhhccCccccc
Q 012114 2 FIIRLPDAKTLHFCAGATLSKGFNRGLGTLSAGGLALAMAELSELAGEWEE-VAIII-SIFTIGFIATFAKLYPTMKPYE 79 (470)
Q Consensus 2 fWivlTVvVVmeptvGaTl~Kg~~R~lGTllGg~lal~v~~ia~~~g~~~~-~~i~i-~vFi~g~~as~~r~~p~ik~y~ 79 (470)
+|+++|++||++|+.|+|..|+++|++||++|+++|+++...........+ +++.+ .+++++.+++.. ..+++
T Consensus 377 yWamLTvvIVsqP~~GaT~sRa~~RiiGTliGallA~ll~v~l~P~l~~~~~Llllllp~~llg~wv~~~-----~~R~s 451 (683)
T PRK11427 377 HTCMLTCVIVANPNVGSSYQKMVLRFGGAFCGAILALLFTLLVMPWLDNIVELLFVLAPIFLLGAWIATS-----SERSS 451 (683)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHh-----cccHH
Confidence 699999999999999999999999999999999999988644331111111 22111 112222222211 12368
Q ss_pred hhhhhHhhhhhhhhcccCCch-hHHHHHHHHHHHHHHhHHHHhhhheeeccccchhHHHHHHHHhHHHHHHHHHHhhhhh
Q 012114 80 YGFRVFLLTYCYILVSGYRTR-EFVETAVTRFLLIALGAGVCLVVNICIYPIWAGEDLHDLVVKNFMSVATSLEGCVKEY 158 (470)
Q Consensus 80 YG~~vf~LTf~LV~ls~y~~~-~~~~~A~~Rv~~I~IGi~ial~VS~lIfP~wAg~~L~~~v~~~~~~lA~~le~~v~~Y 158 (470)
|++..+++|+.++.+.....+ .-...+.+|+++|++|++|+.+++.+|||.|.+..+++.+.+.+..+++.++...+..
T Consensus 452 Ya~~~ag~T~~li~L~~l~~p~~d~~~i~dRvl~tLLGi~iA~la~~lVwP~~~~~~L~~~l~~aLr~la~~l~~~~~~~ 531 (683)
T PRK11427 452 YIGTQMVVTFALATLENVFGPVYDLVEIRDRALGILIGTVVSAVIYTFVWPESEARTLPQKLAGALGMLSKVLRIPRQQE 531 (683)
T ss_pred HHHHHHHHHHHHHHhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999987443221 1134566799999999999999999999999999999999999999988776532100
Q ss_pred cccccccccccccccccccchHHH-HhhHHHhhccchHhhhccccccCC
Q 012114 159 LSCVEYERIPSKILTYQASDNLVY-SGYRSAVESTSQEDALVGFAIWEP 206 (470)
Q Consensus 159 ~~~~e~~~~~~~~l~~~~~~~~~~-~~y~s~L~s~a~~EsL~~~A~wEp 206 (470)
..++.-| +.-+.+-.+..+.|.+...-..||
T Consensus 532 -----------------~~~~~~~~~~R~~l~~a~~~le~~~~rl~~Ep 563 (683)
T PRK11427 532 -----------------VTALRTYLQIRIGLHAAFNACEEMCQRVALER 563 (683)
T ss_pred -----------------hhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 0011111 111333445566777888888888
No 8
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.50 E-value=3.3e-13 Score=148.79 Aligned_cols=139 Identities=14% Similarity=0.003 Sum_probs=107.2
Q ss_pred eEEeEeeEEEeecCchhHHhhhhhhhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhhccCccccchh
Q 012114 2 FIIRLPDAKTLHFCAGATLSKGFNRGLGTLSAGGLALAMAELSELAGEWEEVAIIISIFTIGFIATFAKLYPTMKPYEYG 81 (470)
Q Consensus 2 fWivlTVvVVmeptvGaTl~Kg~~R~lGTllGg~lal~v~~ia~~~g~~~~~~i~i~vFi~g~~as~~r~~p~ik~y~YG 81 (470)
+|...||++|.||..|+|..||++|++||++|+++++++.-... +......+++++|+++ | .|...-| +..|.
T Consensus 56 a~a~~~vfivsqp~~g~t~~kai~r~vgt~lg~~~~vll~~~~v--~~P~l~~l~ialw~~~-~-lyl~r~~---rl~yv 128 (683)
T PRK11427 56 ALSLAVLFYGIQSNAFYTKFVAILFVVATVLEIGSLFLIYKWSY--GYPLIRLIIAGPILMG-C-MFLMRTH---RLGLV 128 (683)
T ss_pred HHHHHHHHheeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHH-H-HHHhhcc---chhHH
Confidence 57888999999999999999999999999999999998733322 2112234567777743 3 3332122 26999
Q ss_pred hhhHhhhhhhh--hcccCCc-hhHHHHHHHHHHH-----HHHhHHHHhhhheeeccccchhHHHHHHHHhHHHHHHHHH
Q 012114 82 FRVFLLTYCYI--LVSGYRT-REFVETAVTRFLL-----IALGAGVCLVVNICIYPIWAGEDLHDLVVKNFMSVATSLE 152 (470)
Q Consensus 82 ~~vf~LTf~LV--~ls~y~~-~~~~~~A~~Rv~~-----I~IGi~ial~VS~lIfP~wAg~~L~~~v~~~~~~lA~~le 152 (470)
|.+++|| .++ .+++..+ +++ ..|..+ |.+|++|+++||.++||...+..|+..+...+.+.+..+.
T Consensus 129 f~lag~t-aii~~~f~~v~~~~E~----~~R~~e~~w~~i~~gi~ca~lV~~l~~P~~~~~~l~~~l~~~l~~a~~~l~ 202 (683)
T PRK11427 129 FFAVAIV-AIYGQTFPAMLDYPEV----VVRLTLWCIVVGLYPTLLMTLIGVLWFPSRAINQMHQALNDRLDDAISHLT 202 (683)
T ss_pred HHHHHHH-HHHHhhcccccchHHH----HHHHHHHHHHHHHHHHHHHHHHHhHhCcCChHHHHHHHHHHHHHHHHHHhc
Confidence 9999999 577 5666544 443 788888 9999999999999999999999999988888887766654
No 9
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.48 E-value=5.8e-13 Score=147.79 Aligned_cols=237 Identities=22% Similarity=0.143 Sum_probs=163.8
Q ss_pred eEEeEeeEEEeecCchhHHhhhhhhhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhhccCccccchh
Q 012114 2 FIIRLPDAKTLHFCAGATLSKGFNRGLGTLSAGGLALAMAELSELAGEWEEVAIIISIFTIGFIATFAKLYPTMKPYEYG 81 (470)
Q Consensus 2 fWivlTVvVVmeptvGaTl~Kg~~R~lGTllGg~lal~v~~ia~~~g~~~~~~i~i~vFi~g~~as~~r~~p~ik~y~YG 81 (470)
.|.++|++||++|..|+.+.|+++|++||++|+.++.++..+ ..+...++++++++|+ |+|..+.-.|..+ .+|+
T Consensus 37 ~~~~~~~~i~~~~~~~~~~~~~~~rli~tlig~~~~~~~~~~--~~~~p~~f~~~~~~~~-~l~~~~~~~~~~~--~~~a 111 (674)
T COG1289 37 SWAVSTVAIVSAPDSGAVLSKGLKRLIGTLIGFAVALLLVAL--LAQEPWLFLLLLTLWL-GLCTAIGSLYRTI--ASYA 111 (674)
T ss_pred cHHHHHHHHHhCcCCCCHHHhhHHHHHHHHHHHHHHHHHHHH--HccCcHHHHHHHHHHH-HHHHHHHHhhccH--HHHH
Confidence 589999999999999999999999999999999999888433 3232223344555555 6788877777666 8999
Q ss_pred hhhHhhhhhhhhcccCC--c-hhHHHHHHHHHHHHHHhHHHHhhhheeeccccchhHHHHHHHHhHHHHHHHHHHhhhhh
Q 012114 82 FRVFLLTYCYILVSGYR--T-REFVETAVTRFLLIALGAGVCLVVNICIYPIWAGEDLHDLVVKNFMSVATSLEGCVKEY 158 (470)
Q Consensus 82 ~~vf~LTf~LV~ls~y~--~-~~~~~~A~~Rv~~I~IGi~ial~VS~lIfP~wAg~~L~~~v~~~~~~lA~~le~~v~~Y 158 (470)
+.+++||..+++ +... . ...++.|++|+.+|.+|+.|+-.++...+|...++.|-+.+......+....+....
T Consensus 112 ~~la~yT~~~~~-~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~-- 188 (674)
T COG1289 112 FVLAGYTALIIG-PAPAIPEPELLFDGAVWRVVEILLGILCAPVVPLLESPSRLYQALANYLEAKSRLFAQLLLAAAA-- 188 (674)
T ss_pred HHHHHHHHHHhc-cccccccHHHHHHHHHHHHHHHHHHHHHhccchHhhhHHHHHHHHHHHHHHHHhccchhhhhhhc--
Confidence 999999999999 4332 2 357899999999999999999999999999988877766665555544444332211
Q ss_pred ccccccccccccccccccc-chHHHHhhHHHhhccchHhhhccccccCCCCCCCCCCCCChhhHHhHHHHHHHHHHHHHH
Q 012114 159 LSCVEYERIPSKILTYQAS-DNLVYSGYRSAVESTSQEDALVGFAIWEPPHGPYKKFKYPWKNYVKVSGALRHCAFMVMA 237 (470)
Q Consensus 159 ~~~~e~~~~~~~~l~~~~~-~~~~~~~y~s~L~s~a~~EsL~~~A~wEp~hgrf~~~~~Pw~~Y~kvg~~lR~ca~~v~A 237 (470)
++.. ++....+....++.....+.++.. .||.++++-+. . .++.++..+..
T Consensus 189 ---------------~~~~~~~~~~~~~~~~l~~~~~~~~~r~~-~~~~~~~~~r~--------~----~l~~l~~d~~~ 240 (674)
T COG1289 189 ---------------GELLDTARQNAALVDALAQTLTLRLLRSA-GFEGSRGRRRN--------L----RLYFLAQDLLE 240 (674)
T ss_pred ---------------CCcccHHHHhHHHHHHHHHHHHHHHHHHh-cccCCchhhhH--------H----HHHHHHHHHHH
Confidence 1111 234556788888888888888888 89988777662 2 34444444444
Q ss_pred hhh---hhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012114 238 LHG---CILSEIQAPAERRQVFRQELQRVGYAGAKVLRELGN 276 (470)
Q Consensus 238 L~g---cl~seiqap~~~r~~~~~e~~~l~~e~a~vLreLa~ 276 (470)
+.+ +.....+.+. ...+...++++-.+.++.+++++.
T Consensus 241 ~~s~~~~~~~l~~~~~--~~~i~~~~~~ll~~~~~~~~~~~~ 280 (674)
T COG1289 241 RASSLHQYLELAEALR--PTDILERLQRLLAELAQALQALAQ 280 (674)
T ss_pred HHHhhhhHHHHHhhcC--CCchHHHHHHHHHHHHHHHHHHHH
Confidence 444 1111111111 112345666677777777777766
No 10
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=99.40 E-value=1.5e-13 Score=119.93 Aligned_cols=111 Identities=22% Similarity=0.286 Sum_probs=87.1
Q ss_pred eEEeEeeEEEeecCchhHHhhhhhhhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhhccCccccchh
Q 012114 2 FIIRLPDAKTLHFCAGATLSKGFNRGLGTLSAGGLALAMAELSELAGEWEEVAIIISIFTIGFIATFAKLYPTMKPYEYG 81 (470)
Q Consensus 2 fWivlTVvVVmeptvGaTl~Kg~~R~lGTllGg~lal~v~~ia~~~g~~~~~~i~i~vFi~g~~as~~r~~p~ik~y~YG 81 (470)
+|+.+|+++|++|+.|+|..|+.+|++||++|+++|+++..+... ++.+...+++..++..+. +.+.|+
T Consensus 15 ~W~~it~~~v~~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~------~~~~y~ 83 (128)
T PF13515_consen 15 YWAPITVVSVLSPSYGATVNRAIQRILGTLIGVVLGLLLLYLFPG-----NYVLILIVFLLMFLIFYF------LSKNYA 83 (128)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHH------HhccHH
Confidence 699999999999999999999999999999999999998655432 133333344444444332 235667
Q ss_pred hhhHhhhhhhhhcccCC---chhHHHHHHHHHHHHHHhHHHHhhh
Q 012114 82 FRVFLLTYCYILVSGYR---TREFVETAVTRFLLIALGAGVCLVV 123 (470)
Q Consensus 82 ~~vf~LTf~LV~ls~y~---~~~~~~~A~~Rv~~I~IGi~ial~V 123 (470)
...+.+|+.++.+.++. ..+.++.+..|+.++++|+++++++
T Consensus 84 ~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~R~~~v~iG~~i~~~v 128 (128)
T PF13515_consen 84 IAQIFITVMVVLLFSLIHPGNGDPWQLALERILDVLIGILIALLV 128 (128)
T ss_pred HHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHhC
Confidence 77888999999888874 4566889999999999999999874
No 11
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.37 E-value=5.2e-12 Score=140.26 Aligned_cols=150 Identities=18% Similarity=0.215 Sum_probs=115.9
Q ss_pred eEEeEeeEEEeecC-chhHHhhhhhhhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhhccCccccch
Q 012114 2 FIIRLPDAKTLHFC-AGATLSKGFNRGLGTLSAGGLALAMAELSELAGEWEEVAIIISIFTIGFIATFAKLYPTMKPYEY 80 (470)
Q Consensus 2 fWivlTVvVVmept-vGaTl~Kg~~R~lGTllGg~lal~v~~ia~~~g~~~~~~i~i~vFi~g~~as~~r~~p~ik~y~Y 80 (470)
+||++|++||++|+ .|+|..|..+|++||++|.++|+++.++.....+....++.+..|+.+ .+.+ . ..|
T Consensus 381 ~w~llt~~vV~~~~~~~~t~~r~~~ri~GTllg~~~g~~~l~~~~p~~~~~l~~l~~~~~l~~---~~~~----~--~~~ 451 (674)
T COG1289 381 YWILLTAAVVCQPNAYGATRQRARQRILGTLLGLLLGLLVLLLLLPLIPGLLLLLLLAALLFA---AGIR----L--AKY 451 (674)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH---HHHH----h--cch
Confidence 69999999999999 999999999999999999999998866543221111222222222211 1111 1 334
Q ss_pred hhhhHhhhhhhhhcccCCchhHHHHHHHHHHHHHHhHHHHhhhheeeccccchhHHHHHHHHhHHHHHHHHHHhhhhhcc
Q 012114 81 GFRVFLLTYCYILVSGYRTREFVETAVTRFLLIALGAGVCLVVNICIYPIWAGEDLHDLVVKNFMSVATSLEGCVKEYLS 160 (470)
Q Consensus 81 G~~vf~LTf~LV~ls~y~~~~~~~~A~~Rv~~I~IGi~ial~VS~lIfP~wAg~~L~~~v~~~~~~lA~~le~~v~~Y~~ 160 (470)
++..++.|+++.+..+....+.......|++++++|++++.+++.++||.|....+++..++.++.....++....++..
T Consensus 452 ~~a~~~i~l~v~~~~~l~~~~~~~~~~~r~~d~~iG~lIa~~~a~~v~~~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~~ 531 (674)
T COG1289 452 RLATLGITLLVLFLVGLLGSNGPDYDLPRFLDTLLGSLIALALAFLVWPLWRPRRLRRALRRALRALRRDLASALSREPT 531 (674)
T ss_pred hHHHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHhcCCc
Confidence 44456788888888776666778899999999999999999999999999999999999999999999999888776654
No 12
>COG4129 Predicted membrane protein [Function unknown]
Probab=98.86 E-value=5e-08 Score=100.55 Aligned_cols=135 Identities=24% Similarity=0.229 Sum_probs=91.2
Q ss_pred EeEeeEEEeecCchhHHhhhhhhhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhhccCccccchhhh
Q 012114 4 IRLPDAKTLHFCAGATLSKGFNRGLGTLSAGGLALAMAELSELAGEWEEVAIIISIFTIGFIATFAKLYPTMKPYEYGFR 83 (470)
Q Consensus 4 ivlTVvVVmeptvGaTl~Kg~~R~lGTllGg~lal~v~~ia~~~g~~~~~~i~i~vFi~g~~as~~r~~p~ik~y~YG~~ 83 (470)
+.+|+|++++||...++.+|++|++|+.+|+++|+++..+ +| +.|+.+++.+.++..++...+ ..-|..
T Consensus 38 A~i~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l---~g-~~~~~~~v~~~i~i~~~~~~~-------~~~g~~ 106 (332)
T COG4129 38 AGISAVLCLSPTIKRSLKRALQRLLGNALGAILAVLFFLL---FG-QNPIAFGVVLLIIIPLLVLLK-------LENGVV 106 (332)
T ss_pred HHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH---cC-ccHHHHHHHHHHHHHHHHHHh-------cccchh
Confidence 5689999999999999999999999999999999998444 45 355555554444333444332 233444
Q ss_pred hHhhhhhhhhcccCCchhHHHHHHHHHHHHHHhHHHHhhhheeeccccchhHHHHHHHHhHHHHHHHHHHh
Q 012114 84 VFLLTYCYILVSGYRTREFVETAVTRFLLIALGAGVCLVVNICIYPIWAGEDLHDLVVKNFMSVATSLEGC 154 (470)
Q Consensus 84 vf~LTf~LV~ls~y~~~~~~~~A~~Rv~~I~IGi~ial~VS~lIfP~wAg~~L~~~v~~~~~~lA~~le~~ 154 (470)
...++...+.+... .+.++... |++++++|++++++||..++|.- .++.....+-....++-+...
T Consensus 107 ~~~~~~~~ii~~~~-~~~~~~~~--r~l~~~vG~~~a~lvn~~~~~~~--~~~~~~~~kv~~~~~~il~~~ 172 (332)
T COG4129 107 PITVGVLHILVAAM-IPLFLIFN--RFLLVFVGVGVAFLVNLVMPPPD--YELKLYRAKVEAILASILWEV 172 (332)
T ss_pred HHHHHHHHHHHHcc-cchhHHHH--HHHHHHHHHHHHHHHhhhcCCch--HHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443 23333333 99999999999999999999986 555555555555555544433
No 13
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=98.86 E-value=8.7e-09 Score=93.83 Aligned_cols=112 Identities=29% Similarity=0.404 Sum_probs=78.5
Q ss_pred eEEeEeeEEEeecCchhHHhhhhhhhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhhccCccccchh
Q 012114 2 FIIRLPDAKTLHFCAGATLSKGFNRGLGTLSAGGLALAMAELSELAGEWEEVAIIISIFTIGFIATFAKLYPTMKPYEYG 81 (470)
Q Consensus 2 fWivlTVvVVmeptvGaTl~Kg~~R~lGTllGg~lal~v~~ia~~~g~~~~~~i~i~vFi~g~~as~~r~~p~ik~y~YG 81 (470)
++..+++++.+|||+-.|+..|++|++|+++|+++|+++..+. |. .++.+++.+.+.-.++...| .+-|
T Consensus 30 ~~A~i~Ail~~q~T~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~---g~-~~~~~~l~v~i~i~~~~~l~-------~~~~ 98 (141)
T PF06081_consen 30 FFAPIAAILSMQPTVYRSLKQGLNRILGTLIGALLALLFFLIL---GY-NPLSIGLAVIITIPICNWLK-------LGEG 98 (141)
T ss_pred HHHHHHHhheeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Cc-cHHHHHHHHHHHHHHHHHhC-------CCCe
Confidence 4567889999999999999999999999999999999986553 42 45555555544322232222 2233
Q ss_pred hhhHhhhhhhhhcccCCchhHHHHHHHHHHHHHHhHHHHhhhheee
Q 012114 82 FRVFLLTYCYILVSGYRTREFVETAVTRFLLIALGAGVCLVVNICI 127 (470)
Q Consensus 82 ~~vf~LTf~LV~ls~y~~~~~~~~A~~Rv~~I~IGi~ial~VS~lI 127 (470)
......++..+..++ .++ +..+.+|++++++|++++++||.++
T Consensus 99 ~~~a~v~~~~i~~~~--~~~-~~~~~~r~l~t~iG~~va~lVN~~~ 141 (141)
T PF06081_consen 99 IIVAAVTFVHILLSG--SDS-FSYALNRVLLTLIGIGVALLVNLLM 141 (141)
T ss_pred ehHHHHHHHHHHHcC--Ccc-HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344445554444432 333 3449999999999999999999763
No 14
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=98.72 E-value=1.9e-06 Score=86.43 Aligned_cols=175 Identities=15% Similarity=0.176 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhHHHHhhhheeeccccchhHHHHHHHHhHHHHHHHHHHhhhhhcccccccccccccccccccchHH---
Q 012114 105 TAVTRFLLIALGAGVCLVVNICIYPIWAGEDLHDLVVKNFMSVATSLEGCVKEYLSCVEYERIPSKILTYQASDNLV--- 181 (470)
Q Consensus 105 ~A~~Rv~~I~IGi~ial~VS~lIfP~wAg~~L~~~v~~~~~~lA~~le~~v~~Y~~~~e~~~~~~~~l~~~~~~~~~--- 181 (470)
.+..+...+++|++|.++.|.+.||.|-....+..++..+..+|++++.-.+ +++....+ .++..
T Consensus 70 ~~~~~~~l~~~Gglwy~~lsl~~~~l~p~r~~rqaLa~~y~~lA~yl~~ka~-~~~p~~~~-----------~~~~~~~~ 137 (284)
T PF12805_consen 70 EALEHALLFLAGGLWYLLLSLLWWPLRPYRPVRQALAECYRALADYLRAKAR-FFDPDQHD-----------DDEQLRIE 137 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcc-----------chhHHHHH
Confidence 6677889999999999999999999999999999999999999999985433 33111100 01111
Q ss_pred HHhhHHHhhcc--chHhhhccccccCCCCCCCCCCCCChhhHHhHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHH--
Q 012114 182 YSGYRSAVEST--SQEDALVGFAIWEPPHGPYKKFKYPWKNYVKVSGALRHCAFMVMALHGCILSEIQAPAERRQVFR-- 257 (470)
Q Consensus 182 ~~~y~s~L~s~--a~~EsL~~~A~wEp~hgrf~~~~~Pw~~Y~kvg~~lR~ca~~v~AL~gcl~seiqap~~~r~~~~-- 257 (470)
.-..+..++.+ ...|.|...- .+.++ +|-....+ .++-.--.++-+...+-+. ...+++++.|+
T Consensus 138 l~~~q~~v~~~~~~~R~~l~~~r--~~~~~------~~~~~~~~---ll~~~~~a~Dl~E~~~as~-~~y~~l~~~f~~~ 205 (284)
T PF12805_consen 138 LAQQQIKVNEALEQARELLLRRR--RSGRG------KPSTYGRR---LLLLFFEAVDLFERALASH-YDYEELREQFKHS 205 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--cccCC------CCCcHHHH---HHHHHHHHHHHHHHHHhcc-ccHHHHHHHhcCC
Confidence 11122222222 1123333221 12222 22222222 4444444444444443222 23455666555
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhhhcccCCCCccHHHHHHHHHHHHHHhhh
Q 012114 258 ---QELQRVGYAGAKVLRELGNKVKNMEKLGSGDILFEIHEAAEELQDKIDR 306 (470)
Q Consensus 258 ---~e~~~l~~e~a~vLreLa~si~~m~~~~~~~~~~~~~~A~~~Lq~~i~~ 306 (470)
..++++-.+.+..|+.+|.+|..-+++. ..++++.+.++|+..++.
T Consensus 206 ~~l~~~~~~l~~~a~~l~~ia~ai~~~~~~~---~~~~l~~~l~~l~~~l~~ 254 (284)
T PF12805_consen 206 DVLFRFQRLLEQLAQALRQIAQAILRGRPYH---HRNRLKRALEALEESLEF 254 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC---CchHHHHHHHHHHHHHHH
Confidence 6899999999999999999999544332 335666777777766544
No 15
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=98.61 E-value=9.9e-06 Score=86.63 Aligned_cols=213 Identities=13% Similarity=0.084 Sum_probs=130.7
Q ss_pred ecCchhHHhhhhhhhHHHHHHHHHHHHHHHHHHhcCch--------------------hH-------------------H
Q 012114 13 HFCAGATLSKGFNRGLGTLSAGGLALAMAELSELAGEW--------------------EE-------------------V 53 (470)
Q Consensus 13 eptvGaTl~Kg~~R~lGTllGg~lal~v~~ia~~~g~~--------------------~~-------------------~ 53 (470)
.-.+|..+...+.=++|+++|.+.|++..+++...-+. .+ .
T Consensus 59 ~~~~~~~~~~~~~~~~g~~~g~~~~~l~~~~a~~aR~~~t~a~l~~~~~~~~~~~s~~~~~~~~~~~i~~G~~~~a~~sa 138 (459)
T PF10337_consen 59 GRPRGKFLEAMILLLLGVCLGWAWGLLAMYIAVAARPHDTQARLQQLQQSAGACTSGPNPAACAQQLIFDGFFYDARASA 138 (459)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHhccccCCCChhHHHHHhhcccceecchHHH
Confidence 44566777777777888888888887777766533200 00 2
Q ss_pred HHHHHHHHHHHHHHHHhhc-cCccccchhhhhHhhhhhhhhcccCCch--hHHHHHHHHHHHHHHhHHHHhhhheeeccc
Q 012114 54 AIIISIFTIGFIATFAKLY-PTMKPYEYGFRVFLLTYCYILVSGYRTR--EFVETAVTRFLLIALGAGVCLVVNICIYPI 130 (470)
Q Consensus 54 ~i~i~vFi~g~~as~~r~~-p~ik~y~YG~~vf~LTf~LV~ls~y~~~--~~~~~A~~Rv~~I~IGi~ial~VS~lIfP~ 130 (470)
+.++.+|+..++..++|.. |. +..+..++.+-.++...++...+ ....++..=+.-.++|+++++++|++|||.
T Consensus 139 V~av~l~~~i~~~~~lRa~~p~---~~~~~I~~~I~~~i~~t~g~~~p~~~~~~l~~~ll~P~~ig~ai~~~vslliFP~ 215 (459)
T PF10337_consen 139 VFAVFLFVFIYFHGWLRAKNPK---LNFPVIFGSIFVDIFLTYGPLFPTFFAYTLGKTLLKPFLIGIAIALVVSLLIFPE 215 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhCcc---hHHHHHHHHHHHHHHHHhCcCcCcchHHHHHHHHHHHHHHHHHHHHHHheeecCC
Confidence 3345555555666666632 21 33443333333333333333322 334555555677899999999999999999
Q ss_pred cchhHHHHHHHHhHHHHHHHHHHhhhhhcccccccccccccccccccchHHHHhhHHHhhcc-chHhhhccccccCCCCC
Q 012114 131 WAGEDLHDLVVKNFMSVATSLEGCVKEYLSCVEYERIPSKILTYQASDNLVYSGYRSAVEST-SQEDALVGFAIWEPPHG 209 (470)
Q Consensus 131 wAg~~L~~~v~~~~~~lA~~le~~v~~Y~~~~e~~~~~~~~l~~~~~~~~~~~~y~s~L~s~-a~~EsL~~~A~wEp~hg 209 (470)
.++..+-+.+.+.+..+-..++.. ..||...+.+.... ...-...++.+.-+.++ ...+.-..++..|...|
T Consensus 216 sss~~~~~~~~~~l~~l~~~l~~~-~~~l~~~~~~~~~~------~~~~~~L~~~~~~l~~~~~~l~~~l~~~~~Eis~g 288 (459)
T PF10337_consen 216 SSSHVVLKSMEDYLRLLKKALDAQ-RNFLQSSEPSDEFD------AKSLKKLKATKAKLRALYAKLQAALRFLKLEISYG 288 (459)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCCCccc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHeee
Confidence 999999988888888888887754 44776443321000 00002233333333333 44567788888888866
Q ss_pred CCCCCCCChhhHHhHHHHHHHHHHHHHHhhh
Q 012114 210 PYKKFKYPWKNYVKVSGALRHCAFMVMALHG 240 (470)
Q Consensus 210 rf~~~~~Pw~~Y~kvg~~lR~ca~~v~AL~g 240 (470)
| ++=+.|.++-..+|+....+.+|..
T Consensus 289 r-----l~~~Dl~~i~~~lr~l~~~~~gL~~ 314 (459)
T PF10337_consen 289 R-----LSPDDLKPIFSLLRSLMIPLSGLSS 314 (459)
T ss_pred c-----CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 5567778888888887777777666
No 16
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=98.44 E-value=2e-05 Score=77.07 Aligned_cols=142 Identities=15% Similarity=0.183 Sum_probs=103.3
Q ss_pred ccccchhHHHHHHHHhHHHHHHHHHHhhhhhcccccccccccccccccccchHHHHhhHHHhhccchHhhhccccccCCC
Q 012114 128 YPIWAGEDLHDLVVKNFMSVATSLEGCVKEYLSCVEYERIPSKILTYQASDNLVYSGYRSAVESTSQEDALVGFAIWEPP 207 (470)
Q Consensus 128 fP~wAg~~L~~~v~~~~~~lA~~le~~v~~Y~~~~e~~~~~~~~l~~~~~~~~~~~~y~s~L~s~a~~EsL~~~A~wEp~ 207 (470)
+|..++..+++.+++.+..++++....+..+....+..+.+ .+...+.+.+.+..+...-...+.+..+++|||+
T Consensus 2 ~P~Sar~~vRk~La~~l~~l~~~Y~~v~s~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~L~~l~~~l~~~k~Ep~ 76 (229)
T PF10334_consen 2 RPPSARRHVRKTLASTLSELGDLYSLVVSFWSRRLDNPDGH-----IDAEEDAIRKRFLKLQQSLNSLRTLLAFAKFEPS 76 (229)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccc-----chhhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCC
Confidence 59999999999999999999999887776665432111111 0011234666666666666788999999999999
Q ss_pred CCCCCCCCCChhhHHhHHHHHHHHHHHHHHhhhh--hhcccCCChHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhc
Q 012114 208 HGPYKKFKYPWKNYVKVSGALRHCAFMVMALHGC--ILSEIQAPAERRQVFR----QELQRVGYAGAKVLRELGNKVKNM 281 (470)
Q Consensus 208 hgrf~~~~~Pw~~Y~kvg~~lR~ca~~v~AL~gc--l~seiqap~~~r~~~~----~e~~~l~~e~a~vLreLa~si~~m 281 (470)
++ .+||-+.|.+ ++..|..+++.|+.. +.+... |.+.+..+. -+-.++.+++-.+|..+++|+++-
T Consensus 77 ---l~-G~FP~~~Y~~---l~~~~~~il~~l~~l~~~~~~l~-~~~~~~~l~~~~~~~~~~~~~~i~~vl~~ls~al~~g 148 (229)
T PF10334_consen 77 ---LK-GRFPKETYQR---LLELCQNILDLLSLLSYVSTRLE-PSEWRERLLRRTGWLRPELIGDIFSVLYMLSSALRTG 148 (229)
T ss_pred ---CC-CCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHcc-hhhHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcC
Confidence 55 6899999999 778888888888873 334444 655443333 455667788999999999999974
Q ss_pred c
Q 012114 282 E 282 (470)
Q Consensus 282 ~ 282 (470)
.
T Consensus 149 ~ 149 (229)
T PF10334_consen 149 Q 149 (229)
T ss_pred C
Confidence 4
No 17
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=98.03 E-value=0.0014 Score=72.39 Aligned_cols=136 Identities=17% Similarity=0.062 Sum_probs=96.0
Q ss_pred eecCchhHHhhhhhhhHHHHHHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHHHHhhccCccccchhhhhHhhhhh
Q 012114 12 LHFCAGATLSKGFNRGLGTLSAGGLALAMAELSEL-AGEWEEVAIIISIFTIGFIATFAKLYPTMKPYEYGFRVFLLTYC 90 (470)
Q Consensus 12 meptvGaTl~Kg~~R~lGTllGg~lal~v~~ia~~-~g~~~~~~i~i~vFi~g~~as~~r~~p~ik~y~YG~~vf~LTf~ 90 (470)
+-.+.+....+...++.|+++|+++|+++.++... ...+..+.+.+..|++ .+.+....|. +.|..+-+.++|.
T Consensus 378 lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vlP~~~~f~~L~l~l~~~l~--~~~~~~~~p~---~~~~g~~~~v~f~ 452 (650)
T PF04632_consen 378 LFATLDNPAPALRLFLIGALLGAVLAFLYLFFVLPHLDGFPLLALVLAPFLF--LGGLLMARPR---TAYIGLGFAVFFL 452 (650)
T ss_pred HHcCCcChHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHH--HHHHHHcCch---HHHHHHHHHHHHH
Confidence 36677788899999999999999999887654331 1123333333333332 2233322232 5555556677777
Q ss_pred hhhcccCCchhHHHHHHHHHHHHHHhHHHHhhhheeeccccchhHHHHHHHHhHHHHHHHHH
Q 012114 91 YILVSGYRTREFVETAVTRFLLIALGAGVCLVVNICIYPIWAGEDLHDLVVKNFMSVATSLE 152 (470)
Q Consensus 91 LV~ls~y~~~~~~~~A~~Rv~~I~IGi~ial~VS~lIfP~wAg~~L~~~v~~~~~~lA~~le 152 (470)
+..-.++...--+.....+.+.+++|++++.++..+|+|.-.....++.+.....+++....
T Consensus 453 ~~~~~~n~~~~d~~~f~n~~la~l~G~~~a~l~~~li~p~~~~~~~rrl~~~~~~~l~~~~~ 514 (650)
T PF04632_consen 453 LLLGPGNPYSYDFATFLNRALAILLGIVIAALVFRLIRPFSPEWRRRRLLRALRRDLARLAR 514 (650)
T ss_pred HHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHhh
Confidence 77766665432256788999999999999999999999999999999988888888886654
No 18
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=97.88 E-value=0.00071 Score=76.49 Aligned_cols=246 Identities=13% Similarity=0.082 Sum_probs=126.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhhccCccccchhhhhHhhhhhhhhcccCCchhHH
Q 012114 24 FNRGLGTLSAGGLALAMAELSELAGEWEEVAIIISIFTIGFIATFAKLYPTMKPYEYGFRVFLLTYCYILVSGYRTREFV 103 (470)
Q Consensus 24 ~~R~lGTllGg~lal~v~~ia~~~g~~~~~~i~i~vFi~g~~as~~r~~p~ik~y~YG~~vf~LTf~LV~ls~y~~~~~~ 103 (470)
+++++-|++...++..+..+....+-.-++.+.++.|+.+.+.++...+..+ .+|. +++..|++++.... .
T Consensus 57 ~~~l~it~~~f~i~sl~v~ll~~~p~~~~~~l~~~tf~~~mlga~G~r~~~I---~f~~-L~~aiytml~~~~~---~-- 127 (701)
T TIGR01667 57 LKNLIITLSCFSIASFLVQLLFPKPWLFPFLLTLLTFGFILLGALGQRYATI---AFAS-LLAAIYTMLGAGEV---P-- 127 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhhhhHHhH---HHHH-HHHHHHHHcCcccc---c--
Confidence 4555555555555544433322111000111233444444444444332211 2443 34555665554322 1
Q ss_pred HHHHHHHHHHHHhHHHHhhhheeeccccchhHHHHHHHHhHHHHHHHHHHhhhhhcccccccccccccccccccchHHHH
Q 012114 104 ETAVTRFLLIALGAGVCLVVNICIYPIWAGEDLHDLVVKNFMSVATSLEGCVKEYLSCVEYERIPSKILTYQASDNLVYS 183 (470)
Q Consensus 104 ~~A~~Rv~~I~IGi~ial~VS~lIfP~wAg~~L~~~v~~~~~~lA~~le~~v~~Y~~~~e~~~~~~~~l~~~~~~~~~~~ 183 (470)
....--+.+++|.+|-.+.+++.|..|-.+-++..+++.+..+|++++.-- .+|+..+.++. +....+...
T Consensus 128 -~w~~~pllll~GalwY~l~sll~~~l~p~rp~q~~La~~y~~La~yL~aKa-~lf~p~~~~~~-------~~~~~~l~~ 198 (701)
T TIGR01667 128 -VWFIEPLLILAGTLWYGLLTLIWFLLFPNQPLQESLSRLYRELAEYLEAKS-SLFDPDQHTDP-------EKALLPLAV 198 (701)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCh-------hHhHHHHHH
Confidence 122255568889999999999999999999999999999999999998443 34432111100 000001111
Q ss_pred hhHHHhhccch-HhhhccccccCCCCCCCCCCCCChhhHHhHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHH---
Q 012114 184 GYRSAVESTSQ-EDALVGFAIWEPPHGPYKKFKYPWKNYVKVSGALRHCAFMVMALHGCILSEIQAPAERRQVFRQE--- 259 (470)
Q Consensus 184 ~y~s~L~s~a~-~EsL~~~A~wEp~hgrf~~~~~Pw~~Y~kvg~~lR~ca~~v~AL~gcl~seiqap~~~r~~~~~e--- 259 (470)
....+++...+ .++|..- .+ .+++-....+ .++..- ...-+|--+.+...-++++++.|+++
T Consensus 199 ~n~~lv~~ln~~~~~ll~r---------~~-~~~~~~~~~r---ll~~y~-~A~di~E~a~ss~~~Y~~L~~~f~~sd~l 264 (701)
T TIGR01667 199 RNGKVVDALNQCKQQLLMR---------LR-GNRTDPLTKR---MLRYYF-EAQDIHERASSSHHQYQELQELFEHSDVL 264 (701)
T ss_pred HHHHHHHHHHHHHHHHHHH---------hc-CCCCCchHHH---HHHHHH-HHHHHHHHHHhccCCHHHHHHHhcCCcHH
Confidence 11122211111 1233321 11 1111111112 333222 33344444444445567788888877
Q ss_pred --HHHHHHHHHHHHHHHHHHhhhcccCCCCccHHHHHHHHHHHHHHh
Q 012114 260 --LQRVGYAGAKVLRELGNKVKNMEKLGSGDILFEIHEAAEELQDKI 304 (470)
Q Consensus 260 --~~~l~~e~a~vLreLa~si~~m~~~~~~~~~~~~~~A~~~Lq~~i 304 (470)
++++-...++.++++|.+|..-+++... ++.+.|.++|+..+
T Consensus 265 ~~~~~ll~~~a~a~~~la~ai~~~~~~~~~---~~~~~~~~~l~~sl 308 (701)
T TIGR01667 265 FRIQRLLQTQAQACQVLARDILLRQPYYHR---LRTERALEKQIAAL 308 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---chHHHHHHHHHHHH
Confidence 9999999999999999999964433222 33444444444443
No 19
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=97.81 E-value=0.0027 Score=71.92 Aligned_cols=170 Identities=14% Similarity=0.082 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhHHHHhhhheeeccccchhHHHHHHHHhHHHHHHHHHHhhhhhcccccccccccccccccccchHHHHh-
Q 012114 106 AVTRFLLIALGAGVCLVVNICIYPIWAGEDLHDLVVKNFMSVATSLEGCVKEYLSCVEYERIPSKILTYQASDNLVYSG- 184 (470)
Q Consensus 106 A~~Rv~~I~IGi~ial~VS~lIfP~wAg~~L~~~v~~~~~~lA~~le~~v~~Y~~~~e~~~~~~~~l~~~~~~~~~~~~- 184 (470)
....-+.+++|.+|..+.+++.|+.|..+-++..+++.+..+|++++.--+ +|+...+++. ..+..+.
T Consensus 129 w~~~pllll~GalwY~llsl~~~~l~p~rp~q~~LA~~y~~La~yL~aka~-lf~p~~~~~~----------~~~~~~~a 197 (704)
T TIGR01666 129 WFIQPVMLLCGTLWYSVVTLIVHLFFPNRPVQENLAKAFCQLAEYLETKSC-FFDPDEVAEI----------QKKHLNFA 197 (704)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-hCCCCccchh----------hhHHHHHH
Confidence 344778899999999999999999999999999999999999999984433 4442211100 0001110
Q ss_pred --hHHHhhcc-chHhhhccccccCCCCCCCCCCCCChhhHHhHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHH----
Q 012114 185 --YRSAVEST-SQEDALVGFAIWEPPHGPYKKFKYPWKNYVKVSGALRHCAFMVMALHGCILSEIQAPAERRQVFR---- 257 (470)
Q Consensus 185 --y~s~L~s~-a~~EsL~~~A~wEp~hgrf~~~~~Pw~~Y~kvg~~lR~ca~~v~AL~gcl~seiqap~~~r~~~~---- 257 (470)
-..+++.- ...++|.. |.+ .+++-....+ .++..- ...-+|--+.+.....+++++.|+
T Consensus 198 ~~n~~lv~~ln~ar~~Ll~---------r~~-~~~~~~~~~r---~l~~y~-~AqDihEra~ssh~~y~~L~~~f~~sdv 263 (704)
T TIGR01666 198 MKNANVVTALNQVKTALLT---------RIR-GQHRHPLTQR---MLRYYF-AAQDIHERASSSHFDYQQLTEHFKNSDL 263 (704)
T ss_pred HHhHHHHHHHHHHHHHHHH---------Hhc-cCCCChHHHH---HHHHHH-HHHHHHHHHHHcccCHHHHHHHhccCcH
Confidence 11111111 12234432 122 1111111112 332222 233333333333334455666666
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhhhcccCCCCccHHHHHHHHHHHHHH
Q 012114 258 -QELQRVGYAGAKVLRELGNKVKNMEKLGSGDILFEIHEAAEELQDK 303 (470)
Q Consensus 258 -~e~~~l~~e~a~vLreLa~si~~m~~~~~~~~~~~~~~A~~~Lq~~ 303 (470)
.-++++=...++.++++|.+|..-+++. -+ +..+.|.++|+..
T Consensus 264 L~~~~~ll~~~a~ac~~la~ai~~~~~~~-~~--~~~~~al~~l~~s 307 (704)
T TIGR01666 264 LFRFQRLLELQAQACKEITASIRLNKPYQ-HD--KRVERALLGTLHS 307 (704)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CC--chHHHHHHHHHHH
Confidence 5678888899999999999999544332 22 3444445554444
No 20
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=94.11 E-value=10 Score=43.26 Aligned_cols=100 Identities=15% Similarity=0.031 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCchhHHHHH--HHHHHHHHHHHHHhhccCccccchhhhhHhhhhh-hhhcccCCchh
Q 012114 25 NRGLGTLSAGGLALAMAELSELAGEWEEVAII--ISIFTIGFIATFAKLYPTMKPYEYGFRVFLLTYC-YILVSGYRTRE 101 (470)
Q Consensus 25 ~R~lGTllGg~lal~v~~ia~~~g~~~~~~i~--i~vFi~g~~as~~r~~p~ik~y~YG~~vf~LTf~-LV~ls~y~~~~ 101 (470)
+=++||++|..+|+.+..+..-.-+....+++ +..++ .++.... -++ .+|..-+.+.|+ ++++...-+-|
T Consensus 404 ~fl~Gtl~a~~~a~l~~f~vLP~i~~~f~lL~laLap~~-~~~g~~~-----~~~-~~~~lg~~i~f~~~l~l~n~~~~d 476 (652)
T PRK10631 404 DFLYGTLAALPLGALYFMVIIPNTQQSMLLLCISLGVLG-FFIGIEV-----QKR-RLGSLGALASTINILVLDNPMTFH 476 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH-HHHHHHh-----ccc-HHHHHHHHHHHHHHhccCCCCCcC
Confidence 34688999888887775443321111122222 22221 1111211 122 233222233333 33333322233
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhheeeccccc
Q 012114 102 FVETAVTRFLLIALGAGVCLVVNICIYPIWA 132 (470)
Q Consensus 102 ~~~~A~~Rv~~I~IGi~ial~VS~lIfP~wA 132 (470)
+..-+.--+-.++|+++|.++..++.|.-.
T Consensus 477 -~~~FlN~alA~v~Gi~~A~l~f~lirp~~~ 506 (652)
T PRK10631 477 -FSQFLDSALGQIVGCFLALIVILLVRDNSR 506 (652)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 445566678899999999999988888844
No 21
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=89.24 E-value=20 Score=41.51 Aligned_cols=117 Identities=11% Similarity=0.141 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhhccCccccchhhhhHhhhhhhhhcccCCchhHHHHHH
Q 012114 28 LGTLSAGGLALAMAELSELAGEWEEVAIIISIFTIGFIATFAKLYPTMKPYEYGFRVFLLTYCYILVSGYRTREFVETAV 107 (470)
Q Consensus 28 lGTllGg~lal~v~~ia~~~g~~~~~~i~i~vFi~g~~as~~r~~p~ik~y~YG~~vf~LTf~LV~ls~y~~~~~~~~A~ 107 (470)
-|.-+|+..|+++..+....+...++.+++.-|. |.++...|-+ .++.-+. -|++++.++.+++....+.. ..
T Consensus 193 gG~~~Gaa~Gv~~Gli~~l~~~~~~~~~~~~af~-GLlaG~fk~~---gK~g~~~-g~~l~~~il~~y~~~~~~~~-~~- 265 (764)
T TIGR02865 193 GGSGAGAAGGVVIGVILGLANNANLYQIGVFGFA-GLLGGIFKEL---GKIGTGI-GYLVGFLILAFYTQGSVAFS-LA- 265 (764)
T ss_pred cCchHhHHHHHHHHHHHHhcCccHHHHHHHHHHH-HHHHHhhccC---CcceeeH-HHHHHHHHHHHHhccchhHH-HH-
Confidence 3455555555555555544433334555555444 5666655433 3322222 34567777777654333321 11
Q ss_pred HHHHHHHHhHHHHhhhheeeccc-----------cch----------hHHHHHHHHhHHHHHHHHHHhhhhh
Q 012114 108 TRFLLIALGAGVCLVVNICIYPI-----------WAG----------EDLHDLVVKNFMSVATSLEGCVKEY 158 (470)
Q Consensus 108 ~Rv~~I~IGi~ial~VS~lIfP~-----------wAg----------~~L~~~v~~~~~~lA~~le~~v~~Y 158 (470)
+.++++++++-+ ++|. |.. +++++.++.+++.+++.+++.-+-+
T Consensus 266 --~~e~~ia~~lFl-----l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~a~~~~~Ls~tf 330 (764)
T TIGR02865 266 --LYEALIATLLFL-----LIPNKIYKKLERYLDGERKQPDLQEDYMRKVREIAAEKLEEFSEVFRELSNTF 330 (764)
T ss_pred --HHHHHHHHHHHH-----HhhHHHHHHHHhhCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777776653 3442 211 2367778899999998888765544
No 22
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=70.54 E-value=14 Score=40.31 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=60.7
Q ss_pred hhHHhhhhhhhHHHHHHHHHHHHHHHHHHhcCchhHHHH--HHHHHHHHHHHHHHhhc---------cCccccchhhh--
Q 012114 17 GATLSKGFNRGLGTLSAGGLALAMAELSELAGEWEEVAI--IISIFTIGFIATFAKLY---------PTMKPYEYGFR-- 83 (470)
Q Consensus 17 GaTl~Kg~~R~lGTllGg~lal~v~~ia~~~g~~~~~~i--~i~vFi~g~~as~~r~~---------p~ik~y~YG~~-- 83 (470)
|---.+-.--..|++.||+.|.+.=.+....+ ..+++. .++.++.|++..+.|-. +++-...|...
T Consensus 98 gfIpi~l~G~LFGP~~G~l~g~lsDlLg~if~-~G~fFpGFTLsA~L~GlIyGl~r~~l~~~~~~~~~~~~~~~y~~~s~ 176 (477)
T PRK12821 98 ELILVKISGLLFGPIIGIFSAATIDFLTVIFS-GGVFNYGYVLGAILTGMIAGILREVLISTKYLKNRNLSDFAYLVLSV 176 (477)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHH
Confidence 33333444557899999999887766663222 233443 35566667777766622 12211233322
Q ss_pred -----hHhhh-hhhhhcccCC---------------chhHHHHHHHHHHHHHHhHHHHhhhhe
Q 012114 84 -----VFLLT-YCYILVSGYR---------------TREFVETAVTRFLLIALGAGVCLVVNI 125 (470)
Q Consensus 84 -----vf~LT-f~LV~ls~y~---------------~~~~~~~A~~Rv~~I~IGi~ial~VS~ 125 (470)
.|++| |.+++++... .+..+.+...+...|.+|.++..++-+
T Consensus 177 ~~~~a~fl~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~is~~~~~~i~~~f~~~~i~~~ 239 (477)
T PRK12821 177 GMVIASFLLTQFFVISVTTNLPEIRINGGFDLSFNAVSQTFKISLVVYTWIILYFGIGIIIFM 239 (477)
T ss_pred HHHHHHHHHHHHhhhcccccccccccCCCeEEEeccCCcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 23444 3333555221 134578999999999999877665543
No 23
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=68.75 E-value=12 Score=30.40 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=38.9
Q ss_pred HHHHHHhHHHHhhhheeeccccchhHHHHHHHHhHHHHHHHHHHhhhh
Q 012114 110 FLLIALGAGVCLVVNICIYPIWAGEDLHDLVVKNFMSVATSLEGCVKE 157 (470)
Q Consensus 110 v~~I~IGi~ial~VS~lIfP~wAg~~L~~~v~~~~~~lA~~le~~v~~ 157 (470)
+..+++|++++.++.+++=| -.|+++++.+.+..+++.+.+++..++
T Consensus 2 ~~g~l~Ga~~Ga~~glL~aP-~sG~e~R~~l~~~~~~~~~~~~~~~~~ 48 (74)
T PF12732_consen 2 LLGFLAGAAAGAAAGLLFAP-KSGKETREKLKDKAEDLKDKAKDLYEE 48 (74)
T ss_pred HHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999998888 589999999999999888877665543
No 24
>PF06496 DUF1097: Protein of unknown function (DUF1097); InterPro: IPR009476 This family consists of several bacterial putative membrane proteins.
Probab=61.77 E-value=1.2e+02 Score=27.77 Aligned_cols=98 Identities=21% Similarity=0.227 Sum_probs=53.0
Q ss_pred chhHHhhhhhhhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhhccCcc--c-cchhhhhHhhhhhhh
Q 012114 16 AGATLSKGFNRGLGTLSAGGLALAMAELSELAGEWEEVAIIISIFTIGFIATFAKLYPTMK--P-YEYGFRVFLLTYCYI 92 (470)
Q Consensus 16 vGaTl~Kg~~R~lGTllGg~lal~v~~ia~~~g~~~~~~i~i~vFi~g~~as~~r~~p~ik--~-y~YG~~vf~LTf~LV 92 (470)
.|.......+=..+-+.|.+.|.++.++....+...+....+.+++.+++..+....|.+. | .=+|+ ..||...
T Consensus 35 ~G~~~~~~~~~~~~~~~Gi~~a~~~~~~~~~~~~~~~~~~~i~v~i~~~~m~~~~~~~~l~~iP~~F~G~---a~~Fa~~ 111 (144)
T PF06496_consen 35 AGGGKKGLKKSLASNLSGIVWAWLAILLSGLLGGNGPLALAIVVGIFSFVMVYQAKLPLLSFIPGWFLGF---ASTFATM 111 (144)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHhcchHHhhCCHHHHHH---HHHHHHh
Confidence 3555555555566777888888888777766654324555666666666666655555442 2 33443 2333333
Q ss_pred hcccCCchhHHHHHHHHHHHHHHhHHH
Q 012114 93 LVSGYRTREFVETAVTRFLLIALGAGV 119 (470)
Q Consensus 93 ~ls~y~~~~~~~~A~~Rv~~I~IGi~i 119 (470)
+...++.......=++-.++|...
T Consensus 112 ---~~~~~~~~~~~~~l~~G~~~G~~~ 135 (144)
T PF06496_consen 112 ---GGLPGNWLAVILSLLLGALLGYAS 135 (144)
T ss_pred ---cccCccHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433
No 25
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.52 E-value=22 Score=31.79 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=24.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHh
Q 012114 25 NRGLGTLSAGGLALAMAELSELAGEWEEVAIIISIFTIGFIATFAK 70 (470)
Q Consensus 25 ~R~lGTllGg~lal~v~~ia~~~g~~~~~~i~i~vFi~g~~as~~r 70 (470)
.=+-||++|+++|+++=.++ |. .|+.+++++. +|+|+.+..
T Consensus 51 efIsGilVGa~iG~llD~~a---gT-sPwglIv~ll-lGf~AG~ln 91 (116)
T COG5336 51 EFISGILVGAGIGWLLDKFA---GT-SPWGLIVFLL-LGFGAGVLN 91 (116)
T ss_pred HHHHHHHHHHHHHHHHHHhc---CC-CcHHHHHHHH-HHHHHHHHH
Confidence 34578999999888775443 32 3444443332 367666543
No 26
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=53.18 E-value=37 Score=35.88 Aligned_cols=124 Identities=10% Similarity=0.202 Sum_probs=63.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH-HhhccCcc-----ccchhhhhHhhhhhhhhcc
Q 012114 22 KGFNRGLGTLSAGGLALAMAELSELAGEWEEVAIIISIFTIGFIATF-AKLYPTMK-----PYEYGFRVFLLTYCYILVS 95 (470)
Q Consensus 22 Kg~~R~lGTllGg~lal~v~~ia~~~g~~~~~~i~i~vFi~g~~as~-~r~~p~ik-----~y~YG~~vf~LTf~LV~ls 95 (470)
.+.+-+++|+.|+.+++....++. .+.+.-.++ ..| .|..+.+. +.-.|..++.+.||++.+.
T Consensus 45 ~~ar~lLstia~smitv~~~~fSi----------~~val~~as-sq~sPR~l~~f~~d~~~q~vLg~Figtfvy~l~~l~ 113 (371)
T PF10011_consen 45 DGARTLLSTIAGSMITVTGFVFSI----------TLVALQLAS-SQFSPRLLRNFMRDRVTQVVLGTFIGTFVYSLLVLI 113 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHh-cccchHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 345567889988888876522211 111111111 111 22222221 2677888888899999998
Q ss_pred cCCchhHHHHHHHHHHHHHHhHHHHhhhheeeccccchhHHHHH-HHHhHHHHHHHHHHhhhhhcc
Q 012114 96 GYRTREFVETAVTRFLLIALGAGVCLVVNICIYPIWAGEDLHDL-VVKNFMSVATSLEGCVKEYLS 160 (470)
Q Consensus 96 ~y~~~~~~~~A~~Rv~~I~IGi~ial~VS~lIfP~wAg~~L~~~-v~~~~~~lA~~le~~v~~Y~~ 160 (470)
+.+.++.-. .-|+. +.++++++++ |++.|-.|-..-.+.. +.+-++.+.+......+.++.
T Consensus 114 ~i~~~~~~~--~p~~~-~~~a~~l~i~-~v~~li~fI~~i~~~iqv~~ii~~i~~~~~~~i~~~~~ 175 (371)
T PF10011_consen 114 AIRSGDYGS--VPRLS-VFIALALAIL-SVVLLIYFIHHIARSIQVSNIIARIEEDARKAIDRLYP 175 (371)
T ss_pred Hcccccccc--CcchH-HHHHHHHHHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhc
Confidence 887643212 44555 6666655544 3556666654322211 333344444444445554443
No 27
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=52.70 E-value=41 Score=25.93 Aligned_cols=17 Identities=29% Similarity=0.182 Sum_probs=10.0
Q ss_pred hhhhHHHHHHHHHHHHH
Q 012114 24 FNRGLGTLSAGGLALAM 40 (470)
Q Consensus 24 ~~R~lGTllGg~lal~v 40 (470)
-+|.+|.++|-++|+..
T Consensus 8 ~~~iiG~~~G~ila~l~ 24 (51)
T PF10031_consen 8 RGKIIGGLIGLILALLI 24 (51)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 34566666666666555
No 28
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=49.38 E-value=33 Score=30.82 Aligned_cols=49 Identities=16% Similarity=0.170 Sum_probs=37.4
Q ss_pred HHHHHHhHHHHhhhheeeccccchhHHHHHHHHhHHHHHHHHHHhhhhhc
Q 012114 110 FLLIALGAGVCLVVNICIYPIWAGEDLHDLVVKNFMSVATSLEGCVKEYL 159 (470)
Q Consensus 110 v~~I~IGi~ial~VS~lIfP~wAg~~L~~~v~~~~~~lA~~le~~v~~Y~ 159 (470)
++-+++|++++.++.+++=|. .|..|+..++++.+.+-...++..+.+.
T Consensus 8 l~G~liGgiiGa~aaLL~AP~-sGkelR~~~K~~~~~~~~~ae~~~~~~~ 56 (115)
T COG4980 8 LFGILIGGIIGAAAALLFAPK-SGKELRKKLKKSGDALFELAEDKGTDIL 56 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCCc-ccHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 467889999998888877775 7888998787777777777766665544
No 29
>PF08893 DUF1839: Domain of unknown function (DUF1839); InterPro: IPR014989 This group of proteins are functionally uncharacterised.
Probab=44.15 E-value=68 Score=33.55 Aligned_cols=77 Identities=17% Similarity=0.120 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhhhhhh--c--ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccHHHHHHHHHHHH
Q 012114 226 GALRHCAFMVMALHGCIL--S--EIQAPAERRQVFRQELQRVGYAGAKVLRELGNKVKNMEKLGSGDILFEIHEAAEELQ 301 (470)
Q Consensus 226 ~~lR~ca~~v~AL~gcl~--s--eiqap~~~r~~~~~e~~~l~~e~a~vLreLa~si~~m~~~~~~~~~~~~~~A~~~Lq 301 (470)
+.||||+..-+=+..+++ . .-..|. ...+.|+++++++--+-=.||.++...+.-...+.++.+..|-+++-
T Consensus 238 ntlRQlGAnfEL~a~~l~WL~~~g~~~~~----~aa~a~~~ias~Ak~~QFrLARAv~r~r~~~~~~~Ld~~~~ay~~~~ 313 (319)
T PF08893_consen 238 NTLRQLGANFELLASYLRWLDAQGFSGPA----EAAEACRTIASEAKVVQFRLARAVARGRFDDCEDCLDPMEAAYDRAM 313 (319)
T ss_pred hhHHhccccHHHHHHHHHHHHhcCCCChH----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHH
Confidence 589999999998777764 1 112333 26788999998876666679999875554466666888988888886
Q ss_pred HHhhh
Q 012114 302 DKIDR 306 (470)
Q Consensus 302 ~~i~~ 306 (470)
..|++
T Consensus 314 ~~L~~ 318 (319)
T PF08893_consen 314 DGLAR 318 (319)
T ss_pred HHHhc
Confidence 66543
No 30
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=39.57 E-value=4.1e+02 Score=26.70 Aligned_cols=56 Identities=18% Similarity=0.068 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhHHHHhhhheeeccccchhHHHHHHHHhHHHHHHHHHHhhhhhcc
Q 012114 105 TAVTRFLLIALGAGVCLVVNICIYPIWAGEDLHDLVVKNFMSVATSLEGCVKEYLS 160 (470)
Q Consensus 105 ~A~~Rv~~I~IGi~ial~VS~lIfP~wAg~~L~~~v~~~~~~lA~~le~~v~~Y~~ 160 (470)
-+..++++-+-..+.+++..+.-+|.-+|..|++.+......+-+.+...++.+..
T Consensus 31 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~G~tL~~~i~~~v~~lv~~~~~L~~~~~~ 86 (275)
T PF13324_consen 31 EEAQELCESLFNALLGLLSLYHGLPKGQGPTLRKEIRSAVKSLVDSSIQLVEELVS 86 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS-GGG-HHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666677899999999999888888777776666665554
No 31
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=38.99 E-value=68 Score=23.39 Aligned_cols=31 Identities=29% Similarity=0.451 Sum_probs=27.9
Q ss_pred cchHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 012114 412 ALSLATFSSLLIEFVARLHNVVDSFEELSEK 442 (470)
Q Consensus 412 al~latfaSLLiE~varl~~vv~~veeL~~~ 442 (470)
+.|.|--.-||+-+=.|||++.++.++|.+.
T Consensus 7 GFPi~va~yLL~R~E~kld~L~~~i~~L~~~ 37 (38)
T PF12841_consen 7 GFPIAVAIYLLVRIEKKLDELTESINELSEA 37 (38)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5688888899999999999999999999863
No 32
>TIGR00930 2a30 K-Cl cotransporter.
Probab=38.30 E-value=1.7e+02 Score=35.01 Aligned_cols=40 Identities=28% Similarity=0.529 Sum_probs=23.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhhc
Q 012114 24 FNRGLGTLSAGGLALAMAELSELAGEWEEVAIIISIFTIGFIATFAKLY 72 (470)
Q Consensus 24 ~~R~lGTllGg~lal~v~~ia~~~g~~~~~~i~i~vFi~g~~as~~r~~ 72 (470)
..|.+|+..|+.+|+..+. + ..++.++.++|++-.+...+
T Consensus 149 isralGp~~Gf~iG~~~~l-a--------~~va~A~~~~Gf~eyl~~lf 188 (953)
T TIGR00930 149 ISRSLGPEFGGSIGLIFAF-A--------NAVAVAMYVVGFAETVLDLL 188 (953)
T ss_pred HHHHhCcHHHHHHHHHHHH-H--------HHHHHHHHHHHHHHHHHHHh
Confidence 4688899888888876532 1 22344555555554444444
No 33
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=35.99 E-value=2.3e+02 Score=25.84 Aligned_cols=21 Identities=19% Similarity=0.037 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhc
Q 012114 27 GLGTLSAGGLALAMAELSELA 47 (470)
Q Consensus 27 ~lGTllGg~lal~v~~ia~~~ 47 (470)
.+|+..|++.|.+-..+....
T Consensus 48 l~Gp~~G~ivg~ig~~l~dll 68 (169)
T PF07155_consen 48 LFGPKYGAIVGAIGDLLSDLL 68 (169)
T ss_pred HHChHHHHHHHHHHHHHHHHh
Confidence 578888888887777777663
No 34
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=35.98 E-value=2.7e+02 Score=25.40 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccHHHHHHHHHHHHHHhhh
Q 012114 227 ALRHCAFMVMALHGCILSEIQAPAERRQVFRQELQRVGYAGAKVLRELGNKVKNMEKLGSGDILFEIHEAAEELQDKIDR 306 (470)
Q Consensus 227 ~lR~ca~~v~AL~gcl~seiqap~~~r~~~~~e~~~l~~e~a~vLreLa~si~~m~~~~~~~~~~~~~~A~~~Lq~~i~~ 306 (470)
+=||..-.|+.|..-+ +||.++...+.+=+-++...+.+.+ +-+..+|.+++.|..||++
T Consensus 62 tKkhLsqRId~vd~kl---------------De~~ei~~~i~~eV~~v~~dv~~i~-----~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 62 TKKHLSQRIDRVDDKL---------------DEQKEISKQIKDEVTEVREDVSQIG-----DDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHHHHHHHHHhhH---------------HHHHHHHHHHHHHHHHHHhhHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 4467777777775544 3444555555555555666666444 3368999999999999865
Q ss_pred h
Q 012114 307 K 307 (470)
Q Consensus 307 ~ 307 (470)
-
T Consensus 122 i 122 (126)
T PF07889_consen 122 I 122 (126)
T ss_pred H
Confidence 4
No 35
>PRK11677 hypothetical protein; Provisional
Probab=32.94 E-value=1.2e+02 Score=27.84 Aligned_cols=49 Identities=12% Similarity=0.028 Sum_probs=30.0
Q ss_pred HHHHHHhHHHHhhhheeecccc-chhHHHHHHHHhHHHHHHHHHHhhhhh
Q 012114 110 FLLIALGAGVCLVVNICIYPIW-AGEDLHDLVVKNFMSVATSLEGCVKEY 158 (470)
Q Consensus 110 v~~I~IGi~ial~VS~lIfP~w-Ag~~L~~~v~~~~~~lA~~le~~v~~Y 158 (470)
++..+||++|++++..+.-|.- .-.+|.+.+.+.-..+..+=++..++|
T Consensus 7 ~i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~YkqeV~~HF 56 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYRQELVSHF 56 (134)
T ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677889999999999877663 344455555444444544444444444
No 36
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=32.77 E-value=1.1e+02 Score=26.05 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=6.1
Q ss_pred HHHHHHHHHhhc
Q 012114 61 TIGFIATFAKLY 72 (470)
Q Consensus 61 i~g~~as~~r~~ 72 (470)
+++++.++..++
T Consensus 61 ~~~~~~~~~~~~ 72 (112)
T PF14015_consen 61 LAAILASLAAFF 72 (112)
T ss_pred HHHHHHHHHHHh
Confidence 334555555554
No 37
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=32.68 E-value=1.2e+02 Score=27.20 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=19.8
Q ss_pred HHHHHHHHhHHHHhhhheeeccccc
Q 012114 108 TRFLLIALGAGVCLVVNICIYPIWA 132 (470)
Q Consensus 108 ~Rv~~I~IGi~ial~VS~lIfP~wA 132 (470)
.|...++++++..+++-.+-||.|+
T Consensus 88 ~~~~~~~lwi~t~~vl~~l~~py~~ 112 (116)
T PF02411_consen 88 RRQTKILLWIVTVLVLLLLAFPYYA 112 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666778888888888888899876
No 38
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=32.38 E-value=1.3e+02 Score=28.63 Aligned_cols=19 Identities=5% Similarity=-0.296 Sum_probs=9.7
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 012114 25 NRGLGTLSAGGLALAMAEL 43 (470)
Q Consensus 25 ~R~lGTllGg~lal~v~~i 43 (470)
+.++++++|..++++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (199)
T PF10112_consen 6 RFIFRWILGVLIAAITFLV 24 (199)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555665555554333
No 39
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=32.30 E-value=1.2e+02 Score=24.98 Aligned_cols=36 Identities=11% Similarity=0.265 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhhcc
Q 012114 32 SAGGLALAMAELSELAGEWEEVAIIISIFTIGFIATFAKLYP 73 (470)
Q Consensus 32 lGg~lal~v~~ia~~~g~~~~~~i~i~vFi~g~~as~~r~~p 73 (470)
+++++|+++.++... +...+.+|++|.+.+..-..|
T Consensus 19 ~~~iisfi~Gy~~q~------~~~~~~~~~~g~~~~~lv~vP 54 (76)
T PF06645_consen 19 ISAIISFIVGYITQS------FSYTFYIYGAGVVLTLLVVVP 54 (76)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhheeC
Confidence 456666666555432 344444455555555444444
No 40
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.18 E-value=96 Score=33.04 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhHHHHhhh---heeeccc
Q 012114 102 FVETAVTRFLLIALGAGVCLVV---NICIYPI 130 (470)
Q Consensus 102 ~~~~A~~Rv~~I~IGi~ial~V---S~lIfP~ 130 (470)
++.+|+-|+ |+.|+.+.+.- -+.|||+
T Consensus 232 IlvLaIvRl--ILF~I~~il~~g~~g~W~FPN 261 (372)
T KOG2927|consen 232 ILVLAIVRL--ILFGITWILTGGKHGFWLFPN 261 (372)
T ss_pred HHHHHHHHH--HHHHHHHHHhCCCCceEeccc
Confidence 456777776 45566665554 5778887
No 41
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=31.12 E-value=1.5e+02 Score=28.49 Aligned_cols=13 Identities=15% Similarity=0.038 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 012114 28 LGTLSAGGLALAM 40 (470)
Q Consensus 28 lGTllGg~lal~v 40 (470)
.|+++=|+++.++
T Consensus 29 ~gGliWs~v~yl~ 41 (173)
T PF11085_consen 29 FGGLIWSLVRYLA 41 (173)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 42
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=30.22 E-value=69 Score=27.39 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=31.6
Q ss_pred HhhhhhhhhcccCCchhHHHHHHHHHHHHHHhHHHHhhhheeecc
Q 012114 85 FLLTYCYILVSGYRTREFVETAVTRFLLIALGAGVCLVVNICIYP 129 (470)
Q Consensus 85 f~LTf~LV~ls~y~~~~~~~~A~~Rv~~I~IGi~ial~VS~lIfP 129 (470)
..+|..++.=+ ..++....+.+|+..+++|++++.+... ++|
T Consensus 17 ~~it~~~v~~~--~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~-~~~ 58 (128)
T PF13515_consen 17 APITVVSVLSP--SYGATVNRAIQRILGTLIGVVLGLLLLY-LFP 58 (128)
T ss_pred HHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC
Confidence 34566655543 3467789999999999999999999884 444
No 43
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=28.59 E-value=4.9e+02 Score=29.69 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhhccCccccchhh
Q 012114 27 GLGTLSAGGLALAMAELSELAGEWEEVAIIISIFTIGFIATFAKLYPTMKPYEYGF 82 (470)
Q Consensus 27 ~lGTllGg~lal~v~~ia~~~g~~~~~~i~i~vFi~g~~as~~r~~p~ik~y~YG~ 82 (470)
.+|++.|+++... +....++..+.++..+++..+++.++...-|.-+...+|+
T Consensus 359 ~fg~~~g~~i~g~---l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~ 411 (599)
T PF06609_consen 359 GFGSCAGAVILGL---LFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAF 411 (599)
T ss_pred HHHHHHHHHHHHH---HHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHH
Confidence 3577777764322 2333455555554445555555555555444433344444
No 44
>PHA02682 ORF080 virion core protein; Provisional
Probab=28.41 E-value=66 Score=31.72 Aligned_cols=44 Identities=23% Similarity=0.316 Sum_probs=34.0
Q ss_pred HHHHHHHhhhcccCCCCccHHHHHHHHHHHHHHhhhhcccccccc
Q 012114 271 LRELGNKVKNMEKLGSGDILFEIHEAAEELQDKIDRKSYLLVNAE 315 (470)
Q Consensus 271 LreLa~si~~m~~~~~~~~~~~~~~A~~~Lq~~i~~~~~ll~~~~ 315 (470)
|..+++|++.+. -.+..+..+++.|.+--|..||..-+||.|+.
T Consensus 217 ladiadsvrdl~-aeS~~LtrDIE~AKstTq~AIdDLRrLl~~~~ 260 (280)
T PHA02682 217 LADIADSVRDLN-AESLSLTRDIENAKSTTQAAIDDLRRLLTGGG 260 (280)
T ss_pred HHHHHHHHHhhh-hhhhhhHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 445666777544 33456679999999999999999999998863
No 45
>PF13295 DUF4077: Domain of unknown function (DUF4077)
Probab=28.27 E-value=2.4e+02 Score=25.76 Aligned_cols=90 Identities=20% Similarity=0.397 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHhhccCccc-cchhhhhHhhhhhhhhcccCCc-hhHHHHH-----------HHHHHHHHHhHHHHhh
Q 012114 56 IISIFTIGFIATFAKLYPTMKP-YEYGFRVFLLTYCYILVSGYRT-REFVETA-----------VTRFLLIALGAGVCLV 122 (470)
Q Consensus 56 ~i~vFi~g~~as~~r~~p~ik~-y~YG~~vf~LTf~LV~ls~y~~-~~~~~~A-----------~~Rv~~I~IGi~ial~ 122 (470)
++++-+.|...+|.- .+.+ |.|-....++-...|++-++.. +.++++. -.|+.-|+-|+ +.+
T Consensus 55 gisvvvfgtlltfie---smeamykyimtfmllmmsfimvqafnespavfqmvyftlavsliylserlvvilggv--avv 129 (175)
T PF13295_consen 55 GISVVVFGTLLTFIE---SMEAMYKYIMTFMLLMMSFIMVQAFNESPAVFQMVYFTLAVSLIYLSERLVVILGGV--AVV 129 (175)
T ss_pred chhhhhHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhHHHHhcccc--hhe
Confidence 556555555555543 4444 7776555556666666666653 4444332 24666555554 455
Q ss_pred hheeeccccchhHHHHHHHHhHHHHHHH
Q 012114 123 VNICIYPIWAGEDLHDLVVKNFMSVATS 150 (470)
Q Consensus 123 VS~lIfP~wAg~~L~~~v~~~~~~lA~~ 150 (470)
....++..|..+-..-..+..-.++|..
T Consensus 130 ltfilcsywpeqffaytaaseaanfasl 157 (175)
T PF13295_consen 130 LTFILCSYWPEQFFAYTAASEAANFASL 157 (175)
T ss_pred eehhhhhcChHHHHHHhhhhhhhhHHHH
Confidence 6667777887655544444433344433
No 46
>PF05433 Rick_17kDa_Anti: Glycine zipper 2TM domain; InterPro: IPR008816 This domain includes a putative two transmembrane alpha-helical region that contains glycine zipper motifs []. The domain is found in several Rickettsia genus specific 17 kDa surface antigen proteins [].; GO: 0019867 outer membrane
Probab=27.61 E-value=49 Score=24.48 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=11.1
Q ss_pred hHHhhhhhhhHHHHHHHHHHHH
Q 012114 18 ATLSKGFNRGLGTLSAGGLALA 39 (470)
Q Consensus 18 aTl~Kg~~R~lGTllGg~lal~ 39 (470)
..+.++-.|.+||++|++++-.
T Consensus 15 ~~ig~~~g~~~g~~~Ga~~Ga~ 36 (42)
T PF05433_consen 15 SQIGGGNGRTLGAVAGAVAGAL 36 (42)
T ss_pred HHhcCCCCcHHHHHHHHHHHHH
Confidence 3344445555555555555543
No 47
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=26.91 E-value=56 Score=29.40 Aligned_cols=18 Identities=33% Similarity=0.242 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 012114 27 GLGTLSAGGLALAMAELS 44 (470)
Q Consensus 27 ~lGTllGg~lal~v~~ia 44 (470)
++|+++||++|.+++++.
T Consensus 8 l~G~liGgiiGa~aaLL~ 25 (115)
T COG4980 8 LFGILIGGIIGAAAALLF 25 (115)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 579999999987775543
No 48
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=26.67 E-value=2.8e+02 Score=25.40 Aligned_cols=66 Identities=18% Similarity=0.300 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCcc--HHHHHHHHHHHH
Q 012114 224 VSGALRHCAFMVMALHGCILSEIQAPAERRQVFRQELQRVGYAGAKVLRELGNKVKNMEKLGSGDI--LFEIHEAAEELQ 301 (470)
Q Consensus 224 vg~~lR~ca~~v~AL~gcl~seiqap~~~r~~~~~e~~~l~~e~a~vLreLa~si~~m~~~~~~~~--~~~~~~A~~~Lq 301 (470)
+...|++||..|-+ ....+..-|.++-.++++++..+...-|.+.++.. .+ +.+++....+.|
T Consensus 36 ~Q~HL~~cA~~Va~--------------~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae-~L~kv~els~~L~~~~ 100 (131)
T PF10158_consen 36 YQEHLNQCAEAVAF--------------DQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAE-QLEKVNELSQQLSRCQ 100 (131)
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 34466777766644 23456677788899999999998888777776643 22 355666666666
Q ss_pred HHh
Q 012114 302 DKI 304 (470)
Q Consensus 302 ~~i 304 (470)
+-+
T Consensus 101 ~lL 103 (131)
T PF10158_consen 101 SLL 103 (131)
T ss_pred HHH
Confidence 554
No 49
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=26.50 E-value=1.6e+02 Score=27.47 Aligned_cols=26 Identities=4% Similarity=0.306 Sum_probs=13.2
Q ss_pred HHHHHHHHHhHHHHhhhheeeccccc
Q 012114 107 VTRFLLIALGAGVCLVVNICIYPIWA 132 (470)
Q Consensus 107 ~~Rv~~I~IGi~ial~VS~lIfP~wA 132 (470)
..-.....+++.++.+....+.|..+
T Consensus 162 ~~~~~~~~~~g~ls~il~~gllPl~E 187 (194)
T PF07698_consen 162 LSSLIFAFINGILSGILVLGLLPLFE 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555666644
No 50
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=25.79 E-value=6.8e+02 Score=25.05 Aligned_cols=36 Identities=14% Similarity=-0.109 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHhHHHHhhhheeeccccchhHH
Q 012114 100 REFVETAVTRFLLIALGAGVCLVVNICIYPIWAGEDL 136 (470)
Q Consensus 100 ~~~~~~A~~Rv~~I~IGi~ial~VS~lIfP~wAg~~L 136 (470)
++.+..+..=++.-+.-.+++++... ++|.+..++.
T Consensus 69 ~~~~~~~~l~~~Gglwy~~lsl~~~~-l~p~r~~rqa 104 (284)
T PF12805_consen 69 PEALEHALLFLAGGLWYLLLSLLWWP-LRPYRPVRQA 104 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHH
Confidence 46788888888888888888877764 8898887653
No 51
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.72 E-value=2.6e+02 Score=25.33 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHhHHHHhhhheeecccc
Q 012114 100 REFVETAVTRFLLIALGAGVCLVVNICIYPIW 131 (470)
Q Consensus 100 ~~~~~~A~~Rv~~I~IGi~ial~VS~lIfP~w 131 (470)
.+-+..+..|+..+++|+++++++..++-+.|
T Consensus 45 ~~S~~~~~~Ri~~~~iG~~~a~~~~~~~g~~~ 76 (141)
T PF06081_consen 45 YRSLKQGLNRILGTLIGALLALLFFLILGYNP 76 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCccH
Confidence 45678999999999999999998876654443
No 52
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.25 E-value=1.2e+02 Score=25.99 Aligned_cols=52 Identities=8% Similarity=0.029 Sum_probs=36.2
Q ss_pred HHHHHHhHHHHhhhheeeccccchhHHHHHHHHhHHHHHHHHHHhhhhhccc
Q 012114 110 FLLIALGAGVCLVVNICIYPIWAGEDLHDLVVKNFMSVATSLEGCVKEYLSC 161 (470)
Q Consensus 110 v~~I~IGi~ial~VS~lIfP~wAg~~L~~~v~~~~~~lA~~le~~v~~Y~~~ 161 (470)
++|++|-++|-.++..++.|.|.+..-.....+........++...++|...
T Consensus 12 LiElLVvl~Iigil~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (149)
T COG2165 12 LIELLVVLAIIGILAALALPSLQGSIDKAKRLEAAQQALRVIRLALEEYRLD 63 (149)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5677777777777777888998876655545666666666677777777654
No 53
>TIGR02849 spore_III_AD stage III sporulation protein AD. Members of this family are the uncharacterized protein SpoIIIAD, part of the spoIIIA operon that acts at sporulation stage III as part of a cascade of events leading to endospore formation. Note that the start sites of members of this family as annotated tend to be variable; quite a few members have apparent homologous protein-coding regions continuing upstream of the first available start codon. The length of the alignment has been set to try to detect all valid members of the family, even if annotation of the start site begins too far downstream.
Probab=24.86 E-value=1.2e+02 Score=26.73 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=30.1
Q ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHHHhhcCCCC
Q 012114 413 LSLATFSSLLIEFVARLHNVVDSFEELSEKANFKE 447 (470)
Q Consensus 413 l~latfaSLLiE~varl~~vv~~veeL~~~A~Fk~ 447 (470)
+|+++=.-++.=.+.|++.++|.+++|++.||-..
T Consensus 5 lsl~agi~If~~~i~kl~~ii~~l~~l~~~a~i~~ 39 (101)
T TIGR02849 5 LSLIAGIVIFLFVMPKINAVVEVIQSLARKAGLDS 39 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 56677777778889999999999999999998765
No 54
>COG4129 Predicted membrane protein [Function unknown]
Probab=24.44 E-value=8.5e+02 Score=25.67 Aligned_cols=23 Identities=48% Similarity=0.342 Sum_probs=18.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Q 012114 21 SKGFNRGLGTLSAGGLALAMAEL 43 (470)
Q Consensus 21 ~Kg~~R~lGTllGg~lal~v~~i 43 (470)
.|-.+|.+=|.+|+.+|+.++.+
T Consensus 7 ~~ig~RtlKt~ia~~La~~ia~~ 29 (332)
T COG4129 7 RKIGARTLKTGLAAGLALLIAHL 29 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678999999999999887553
No 55
>PHA00736 hypothetical protein
Probab=22.51 E-value=2.4e+02 Score=23.22 Aligned_cols=67 Identities=25% Similarity=0.339 Sum_probs=32.1
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHHHHhhccCccccchhhhhHhhhhhhh
Q 012114 20 LSKGFNRGLGTLSAGGLALAMAELSEL-AGEWEEVAIIISIFTIGFIATFAKLYPTMKPYEYGFRVFLLTYCYI 92 (470)
Q Consensus 20 l~Kg~~R~lGTllGg~lal~v~~ia~~-~g~~~~~~i~i~vFi~g~~as~~r~~p~ik~y~YG~~vf~LTf~LV 92 (470)
++-.++-++|+++|-++-+...-+... .|....++.+++- .|...|+-|.|-+ +..+ ++|++-..+|
T Consensus 5 islal~tglgpvi~viiil~mmgltykmagkipaii~gias---tf~lmfmdflplf--wgi~-vifgliag~v 72 (79)
T PHA00736 5 ISLALQTGLGPVIAIIIILAMMGLTYKMAGKIPAILVGIAS---TFTLMFMDFLPLF--WGIT-VIFGLIAGLV 72 (79)
T ss_pred HHHHHHcCCccHHHHHHHHHHHhhHHHHhCCccHHHHHHHH---HHHHHHHHHHHHH--HHHH-HHHHHHHHHh
Confidence 344566668888877655444322222 2322223334322 3334556666654 4444 2455544444
No 56
>COG5547 Small integral membrane protein [Function unknown]
Probab=22.32 E-value=3.6e+02 Score=21.65 Aligned_cols=22 Identities=23% Similarity=0.049 Sum_probs=17.3
Q ss_pred HhhhhhhhHHHHHHHHHHHHHH
Q 012114 20 LSKGFNRGLGTLSAGGLALAMA 41 (470)
Q Consensus 20 l~Kg~~R~lGTllGg~lal~v~ 41 (470)
+.|--+|++|-++|.++|+.+.
T Consensus 4 lk~fkypIIgglvglliAili~ 25 (62)
T COG5547 4 LKKFKYPIIGGLVGLLIAILIL 25 (62)
T ss_pred HHHhccchHHHHHHHHHHHHHH
Confidence 4566688999999998888773
No 57
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=22.13 E-value=1.4e+02 Score=29.34 Aligned_cols=60 Identities=15% Similarity=0.048 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccHHHHHHHHHHHHHHhhhhccccc
Q 012114 253 RQVFRQELQRVGYAGAKVLRELGNKVKNMEKLGSGDILFEIHEAAEELQDKIDRKSYLLV 312 (470)
Q Consensus 253 r~~~~~e~~~l~~e~a~vLreLa~si~~m~~~~~~~~~~~~~~A~~~Lq~~i~~~~~ll~ 312 (470)
+...++|..++++++...=++.-.++..-..-...+-+++++++++.|++.|+..|-+.-
T Consensus 15 ~d~~REE~l~lsRei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ 74 (204)
T COG2178 15 KDKAREEALKLSREIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYF 74 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 344556777777766554444333333211112224468899999999999999887765
No 58
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.57 E-value=1.9e+02 Score=28.33 Aligned_cols=65 Identities=20% Similarity=0.296 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccH---HHHHHHHHHHHHHhhhhcccccccc
Q 012114 251 ERRQVFRQELQRVGYAGAKVLRELGNKVKNMEKLGSGDIL---FEIHEAAEELQDKIDRKSYLLVNAE 315 (470)
Q Consensus 251 ~~r~~~~~e~~~l~~e~a~vLreLa~si~~m~~~~~~~~~---~~~~~A~~~Lq~~i~~~~~ll~~~~ 315 (470)
++-.-+..+-++++..+-..||.|+.++..|.-.....+- ..++++-+.+..-||++-.||..-|
T Consensus 125 ~VL~DlE~~~~el~~~vD~llr~lgg~lh~is~lt~~~vq~yr~aV~kl~d~~DanIK~~Y~lLAk~E 192 (222)
T KOG4514|consen 125 SVLSDLELEAQELASSVDNLLRNLGGLLHSISSLTADNVQVYRNAVNKLTDTLDANIKCQYQLLAKAE 192 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4444467888999999999999999999999866655552 5777788888888888877776543
No 59
>PTZ00391 transport protein particle component (TRAPP) superfamily; Provisional
Probab=20.88 E-value=76 Score=30.25 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=20.7
Q ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHH
Q 012114 413 LSLATFSSLLIEFVARLHNVVDSFEEL 439 (470)
Q Consensus 413 l~latfaSLLiE~varl~~vv~~veeL 439 (470)
.|+++|+.|..|+|...++=++.++|+
T Consensus 1 vslsafafLf~EmV~y~~~~~~~~~el 27 (168)
T PTZ00391 1 VSLSSFAFLFSEIVQYCLSKSKRGYRL 27 (168)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 478999999999998777665555443
No 60
>COG4709 Predicted membrane protein [Function unknown]
Probab=20.20 E-value=7.8e+02 Score=24.22 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHhHH---HHhhhheeec
Q 012114 101 EFVETAVTRFLLIALGAG---VCLVVNICIY 128 (470)
Q Consensus 101 ~~~~~A~~Rv~~I~IGi~---ial~VS~lIf 128 (470)
+.+-.+..++....+|+. +|+.+++++|
T Consensus 138 e~~~~i~~~i~a~f~~IGs~lLgl~~~~~if 168 (195)
T COG4709 138 ESLFLIGSSISAFFIGIGSLLLGLGLGIVIF 168 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566677766666654 5555555444
Done!