Query 012114
Match_columns 470
No_of_seqs 250 out of 337
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 03:03:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ay5_A Cyclin-D1-binding prote 28.2 4.7E+02 0.016 26.2 13.2 170 106-307 84-291 (360)
2 2olt_A Hypothetical protein; s 20.9 4.6E+02 0.016 23.6 12.4 62 216-281 81-143 (227)
3 4gc0_A D-xylose-proton symport 16.5 3E+02 0.01 26.7 7.4 29 38-66 73-101 (491)
4 2ks1_B Epidermal growth factor 13.9 1.6E+02 0.0055 21.1 3.3 13 28-40 14-26 (44)
5 1d0q_A DNA primase; zinc-bindi 12.4 1.3E+02 0.0043 24.7 2.7 26 423-448 71-98 (103)
6 3vr8_C Cytochrome B-large subu 11.7 5.9E+02 0.02 23.4 7.3 28 107-134 152-179 (188)
7 3cue_B Transport protein parti 11.2 1E+02 0.0034 30.5 2.0 28 411-438 55-82 (283)
8 3zrx_A AF1503 protein, osmolar 10.9 5E+02 0.017 19.2 8.6 72 222-305 37-108 (115)
9 2l2t_A Receptor tyrosine-prote 10.7 2.9E+02 0.01 19.7 3.8 8 30-37 11-18 (44)
10 1v54_G Cytochrome C oxidase po 7.5 1.7E+02 0.0057 23.8 1.6 15 206-220 50-64 (85)
No 1
>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix transcriptional regulator cycle; 2.50A {Homo sapiens}
Probab=28.20 E-value=4.7e+02 Score=26.21 Aligned_cols=170 Identities=15% Similarity=0.111 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhHHHHhhhheeeccccchhHHHHHHHHhHHHHHHHHHHhhhhhcccccccccccccccccccchHHHHhh
Q 012114 106 AVTRFLLIALGAGVCLVVNICIYPIWAGEDLHDLVVKNFMSVATSLEGCVKEYLSCVEYERIPSKILTYQASDNLVYSGY 185 (470)
Q Consensus 106 A~~Rv~~I~IGi~ial~VS~lIfP~wAg~~L~~~v~~~~~~lA~~le~~v~~Y~~~~e~~~~~~~~l~~~~~~~~~~~~y 185 (470)
+..++++-+...+.+++..+.-+|.-.|..|++.+......+-+.+...++......+. ....+
T Consensus 84 ~~~~~~~~~~~~l~~l~s~~~~~~~~~g~tl~~~i~~~v~~vl~~~~~L~~~i~~~~~~---------------~~~~~- 147 (360)
T 3ay5_A 84 ETQKFCEQVHAAIKAFIAVYYLLPKDQGITLRKLVRGATLDIVDGMAQLMEVLSVTPTQ---------------SPENN- 147 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------------ccchh-
Confidence 56777777777777765556678999999999988888888877777776655432100 00000
Q ss_pred HHHhhccchHhhhccccccCCCCCCCCCCCCChhhHHhHHHHHHHHHHHHH-Hhhh---hhhcccCCC------------
Q 012114 186 RSAVESTSQEDALVGFAIWEPPHGPYKKFKYPWKNYVKVSGALRHCAFMVM-ALHG---CILSEIQAP------------ 249 (470)
Q Consensus 186 ~s~L~s~a~~EsL~~~A~wEp~hgrf~~~~~Pw~~Y~kvg~~lR~ca~~v~-AL~g---cl~seiqap------------ 249 (470)
.-...-..||-... +. +.|.+++.-+|..+.+..-.|. |+.- .+. + +-|
T Consensus 148 ----------~L~stG~VWeaCd~-l~--~lp~~N~~av~~~~~~~~~lvkDaleEl~E~~e-~-~D~~~~~~~d~ee~~ 212 (360)
T 3ay5_A 148 ----------DLISYNSVWVACQQ-MP--QIPRDNKAAALLMLTKNVDFVKDAHEEMEQAVE-E-SDPYSGLLNDTEENN 212 (360)
T ss_dssp ---------------CHHHHHHHT-TT--TSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-SCC------------
T ss_pred ----------HHHHhhHHHHHHHH-HH--HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-CCccccccccccccc
Confidence 11123345665422 22 4777777667765555443332 2211 110 0 001
Q ss_pred ----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccHHHHHHHHHHHHHHhhhh
Q 012114 250 ----------------------AERRQVFRQELQRVGYAGAKVLRELGNKVKNMEKLGSGDILFEIHEAAEELQDKIDRK 307 (470)
Q Consensus 250 ----------------------~~~r~~~~~e~~~l~~e~a~vLreLa~si~~m~~~~~~~~~~~~~~A~~~Lq~~i~~~ 307 (470)
++. .-+-+.|..+-..+...||.+...++.-.+......++++....+++...+|..
T Consensus 213 d~~~~d~Dd~~g~~~~~~~~~s~ee-~~l~~~~~~l~~a~~~~lk~i~~~ik~~~~~~~v~~LD~L~~~~~~i~~~VDeL 291 (360)
T 3ay5_A 213 SDNHNHEDDVLGFPSNQDLYWSEDD-QELIIPCLALVRASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDL 291 (360)
T ss_dssp ----------------CTTSCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcccccccccccccccccCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHHhHHHHHHH
Confidence 111 223455667777777777777777774333222233677777888887777654
No 2
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=20.91 E-value=4.6e+02 Score=23.62 Aligned_cols=62 Identities=5% Similarity=0.034 Sum_probs=33.9
Q ss_pred CChhhHHhHHHHHHHHHHHHHHhhhhhh-cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 012114 216 YPWKNYVKVSGALRHCAFMVMALHGCIL-SEIQAPAERRQVFRQELQRVGYAGAKVLRELGNKVKNM 281 (470)
Q Consensus 216 ~Pw~~Y~kvg~~lR~ca~~v~AL~gcl~-seiqap~~~r~~~~~e~~~l~~e~a~vLreLa~si~~m 281 (470)
++-..+..+...+...+-.++.....+. -+++.|++. ++++.+++..+.+..+.+..+++.+
T Consensus 81 ~dredi~~L~~~lD~I~D~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ai~~l 143 (227)
T 2olt_A 81 VERTDLLELLTQQDKIANKAKDISGRVIGRQLLIPQAL----QVPFIAYLQRCIDAVGLAQQVINEL 143 (227)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444222 255667644 4566667777777777777777665
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=16.47 E-value=3e+02 Score=26.74 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 012114 38 LAMAELSELAGEWEEVAIIISIFTIGFIA 66 (470)
Q Consensus 38 l~v~~ia~~~g~~~~~~i~i~vFi~g~~a 66 (470)
+...+++...|....++++..+|+++.+.
T Consensus 73 ~~~G~laDr~GRk~~l~~~~~l~~i~~i~ 101 (491)
T 4gc0_A 73 ALGGYCSNRFGRRDSLKIAAVLFFISGVG 101 (491)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 34455677778644455666666665433
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=13.93 E-value=1.6e+02 Score=21.06 Aligned_cols=13 Identities=15% Similarity=0.059 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 012114 28 LGTLSAGGLALAM 40 (470)
Q Consensus 28 lGTllGg~lal~v 40 (470)
.|+++||++++++
T Consensus 14 A~gVVgGv~~~~i 26 (44)
T 2ks1_B 14 ATGMVGALLLLLV 26 (44)
T ss_dssp THHHHHHHHHHHH
T ss_pred EeehhHHHHHHHH
Confidence 4555665555443
No 5
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=12.36 E-value=1.3e+02 Score=24.66 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=19.7
Q ss_pred HHHHHHhhH--HHHHHHHHHhhcCCCCC
Q 012114 423 IEFVARLHN--VVDSFEELSEKANFKEP 448 (470)
Q Consensus 423 iE~varl~~--vv~~veeL~~~A~Fk~~ 448 (470)
|.||.++++ ..||++.|++.++..-+
T Consensus 71 i~fv~~~~~~sf~eA~~~La~~~gi~~~ 98 (103)
T 1d0q_A 71 FTFLMDIEGIPFVEAAKRLAAKAGVDLS 98 (103)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHTCCCG
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhCCCCC
Confidence 555666655 59999999999987654
No 6
>3vr8_C Cytochrome B-large subunit; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_C*
Probab=11.69 E-value=5.9e+02 Score=23.40 Aligned_cols=28 Identities=21% Similarity=0.560 Sum_probs=21.4
Q ss_pred HHHHHHHHHhHHHHhhhheeeccccchh
Q 012114 107 VTRFLLIALGAGVCLVVNICIYPIWAGE 134 (470)
Q Consensus 107 ~~Rv~~I~IGi~ial~VS~lIfP~wAg~ 134 (470)
..|..-+++|+.+.+.+-..++|.|..+
T Consensus 152 ~~~sg~~vl~lSvvltl~la~~~~~~~~ 179 (188)
T 3vr8_C 152 IYRGAYLVLGLAALISLAVVVYPRWERH 179 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 4566777788777777778899998865
No 7
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=11.22 E-value=1e+02 Score=30.51 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=23.6
Q ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHH
Q 012114 411 SALSLATFSSLLIEFVARLHNVVDSFEE 438 (470)
Q Consensus 411 ~al~latfaSLLiE~varl~~vv~~vee 438 (470)
+-+|+.+|+.|+.|+|+.+++-++.++|
T Consensus 55 ~~Vs~s~fafLf~EmV~~~~~~~~~~~e 82 (283)
T 3cue_B 55 QEASLSAMAFLFQEMISQLHRTCKTAGD 82 (283)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHCSSHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhcCchHH
Confidence 4478999999999999999887776665
No 8
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=10.94 E-value=5e+02 Score=19.20 Aligned_cols=72 Identities=13% Similarity=0.018 Sum_probs=40.2
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccHHHHHHHHHHHH
Q 012114 222 VKVSGALRHCAFMVMALHGCILSEIQAPAERRQVFRQELQRVGYAGAKVLRELGNKVKNMEKLGSGDILFEIHEAAEELQ 301 (470)
Q Consensus 222 ~kvg~~lR~ca~~v~AL~gcl~seiqap~~~r~~~~~e~~~l~~e~a~vLreLa~si~~m~~~~~~~~~~~~~~A~~~Lq 301 (470)
..+|.+.+.+-.++..|...+.. .++....+++++...+..+...+..+... .......++.++++++
T Consensus 37 dEi~~l~~~~n~m~~~l~~~~~~-----------~~~~~~~~shel~~~l~~i~~~~~~l~~~-~~~~~~~~~~~~~~~~ 104 (115)
T 3zrx_A 37 DEIGILAKSIERLRRSLKQLADD-----------RTLLMAGVSHDLRTPLTRIRLATEMMSEQ-DGYLAESINKDIEECN 104 (115)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHTSCGG-GHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHH
Confidence 46676777777776666554321 22335556666666666666666654422 2233456666666665
Q ss_pred HHhh
Q 012114 302 DKID 305 (470)
Q Consensus 302 ~~i~ 305 (470)
.-++
T Consensus 105 ~~~~ 108 (115)
T 3zrx_A 105 AIIE 108 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=10.74 E-value=2.9e+02 Score=19.75 Aligned_cols=8 Identities=25% Similarity=0.484 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 012114 30 TLSAGGLA 37 (470)
Q Consensus 30 TllGg~la 37 (470)
++.||++|
T Consensus 11 aIA~gVVg 18 (44)
T 2l2t_A 11 LIAAGVIG 18 (44)
T ss_dssp HHHHHHHH
T ss_pred eEEEeehH
Confidence 34444433
No 10
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=7.49 E-value=1.7e+02 Score=23.84 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=12.2
Q ss_pred CCCCCCCCCCCChhh
Q 012114 206 PPHGPYKKFKYPWKN 220 (470)
Q Consensus 206 p~hgrf~~~~~Pw~~ 220 (470)
.+|.|.|..+|||.-
T Consensus 50 Y~yl~IR~K~FPWGd 64 (85)
T 1v54_G 50 YHHLRIRTKPFSWGD 64 (85)
T ss_dssp CTTSSCCSSCCSSTT
T ss_pred CchhheecCCCCCCC
Confidence 478888888999975
Done!