Query 012114
Match_columns 470
No_of_seqs 250 out of 337
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 03:03:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012114.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012114hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2b0ha1 a.24.9.2 (A:1838-1973) 38.8 86 0.0062 24.7 10.2 79 223-304 44-124 (136)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 21.8 62 0.0045 28.9 5.9 59 31-90 7-67 (248)
3 d1d0qa_ g.41.3.2 (A:) Zinc-bin 13.7 51 0.0037 25.1 2.8 28 422-449 69-98 (102)
4 d1wa8a1 a.25.3.1 (A:1-99) ESAT 12.8 2.3E+02 0.017 20.2 7.6 68 245-312 2-76 (99)
5 d2j3wb1 d.278.1.2 (B:21-188) T 11.8 35 0.0026 28.6 1.3 26 413-438 4-29 (168)
6 d1tlha_ a.150.1.1 (A:) Anti-si 10.0 1.1E+02 0.0078 23.2 3.4 28 413-440 8-40 (89)
7 d1nexa1 a.157.1.1 (A:116-185) 8.6 1.2E+02 0.0091 21.5 3.2 33 220-257 24-56 (70)
8 d1mnta_ a.43.1.1 (A:) Mnt repr 8.2 66 0.0048 23.3 1.4 25 421-448 30-54 (66)
9 d1b3qa1 a.30.2.1 (A:293-354) H 6.8 1.1E+02 0.0083 21.1 2.2 15 426-440 8-22 (62)
10 d1vh6a_ a.24.19.1 (A:) Flagell 6.7 4.4E+02 0.032 19.1 6.1 25 220-244 29-53 (102)
No 1
>d2b0ha1 a.24.9.2 (A:1838-1973) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=38.76 E-value=86 Score=24.71 Aligned_cols=79 Identities=11% Similarity=0.048 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhc--ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccHHHHHHHHHHH
Q 012114 223 KVSGALRHCAFMVMALHGCILS--EIQAPAERRQVFRQELQRVGYAGAKVLRELGNKVKNMEKLGSGDILFEIHEAAEEL 300 (470)
Q Consensus 223 kvg~~lR~ca~~v~AL~gcl~s--eiqap~~~r~~~~~e~~~l~~e~a~vLreLa~si~~m~~~~~~~~~~~~~~A~~~L 300 (470)
+||...+.|+.....|-.|... .....++.+..|.+-.+.|+..+++++..-...-.+ |.-.+...++.+|++.+
T Consensus 44 ~L~~~a~~~a~~~~~L~~~~k~~A~~~~~~~~q~~ll~~ak~v~~s~~~Lv~aak~~~~n---P~d~~~~~~L~~aAr~V 120 (136)
T d2b0ha1 44 ELGPLANQLTSDYGRLASQAKPAAVAAENEEIGAHIKHRVQELGHGCSALVTKAGALQCS---PSDVYTKKELIECARRV 120 (136)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CCcHHHHHHHHHHHHHH
Confidence 5888889999999888886642 222345667777788888888888877765444431 22222245666666666
Q ss_pred HHHh
Q 012114 301 QDKI 304 (470)
Q Consensus 301 q~~i 304 (470)
-..|
T Consensus 121 ~esv 124 (136)
T d2b0ha1 121 SEKV 124 (136)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=21.83 E-value=62 Score=28.86 Aligned_cols=59 Identities=8% Similarity=-0.080 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhhccCccc--cchhhhhHhhhhh
Q 012114 31 LSAGGLALAMAELSELAGEWEEVAIIISIFTIGFIATFAKLYPTMKP--YEYGFRVFLLTYC 90 (470)
Q Consensus 31 llGg~lal~v~~ia~~~g~~~~~~i~i~vFi~g~~as~~r~~p~ik~--y~YG~~vf~LTf~ 90 (470)
++|.+-+++++.+.....+ +.+.+++.+.++.+++.|.-+-|...+ |-|=.+++++.|.
T Consensus 7 ll~l~~a~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fv 67 (248)
T d2r6gf1 7 VLGLLGLLVGYLVVLMYAQ-GEYLFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFV 67 (248)
T ss_dssp HHHHHHHHHHHTHHHHHGG-GCHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHc-chHHHHHHHHHHHHheEEEEEccCccceehhhhHHHHHHHHH
Confidence 4455555554433333332 223333333333334444433333322 3333344444443
No 3
>d1d0qa_ g.41.3.2 (A:) Zinc-binding domain of DNA primase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=13.73 E-value=51 Score=25.10 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=21.3
Q ss_pred HHHHHHHhhH--HHHHHHHHHhhcCCCCCc
Q 012114 422 LIEFVARLHN--VVDSFEELSEKANFKEPV 449 (470)
Q Consensus 422 LiE~varl~~--vv~~veeL~~~A~Fk~~~ 449 (470)
.|.||.++++ -.||+++|+++++..=+.
T Consensus 69 ~i~fv~~~~~~sf~eAv~~La~~~gi~l~~ 98 (102)
T d1d0qa_ 69 AFTFLMDIEGIPFVEAAKRLAAKAGVDLSV 98 (102)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHTCCCGG
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHhCCCCCC
Confidence 4666777766 589999999999985443
No 4
>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=12.75 E-value=2.3e+02 Score=20.25 Aligned_cols=68 Identities=13% Similarity=0.162 Sum_probs=47.0
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC-------ccHHHHHHHHHHHHHHhhhhccccc
Q 012114 245 EIQAPAERRQVFRQELQRVGYAGAKVLRELGNKVKNMEKLGSG-------DILFEIHEAAEELQDKIDRKSYLLV 312 (470)
Q Consensus 245 eiqap~~~r~~~~~e~~~l~~e~a~vLreLa~si~~m~~~~~~-------~~~~~~~~A~~~Lq~~i~~~~~ll~ 312 (470)
+|+.-++.-.-....+...+.++-..|.+|-..|..+...-.. ....+.+.++.+++..|+.-+..|-
T Consensus 2 ~ikvd~~~l~~~A~~~~~~~~~l~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~L~ 76 (99)
T d1wa8a1 2 EMKTDAATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIR 76 (99)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666655677888889999999999999999888744222 2235666677777777666555443
No 5
>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]}
Probab=11.80 E-value=35 Score=28.63 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHHHHHhhHHHHHHHH
Q 012114 413 LSLATFSSLLIEFVARLHNVVDSFEE 438 (470)
Q Consensus 413 l~latfaSLLiE~varl~~vv~~vee 438 (470)
.|+.+|+-|+.|+|..++.-++.++|
T Consensus 4 Vs~s~f~~L~~ElV~y~~~~~~~~~e 29 (168)
T d2j3wb1 4 VSVSAFALLFSEMVQYCQSRVYSVSE 29 (168)
T ss_dssp EEHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred hCHHHHHHHHHHHHHHHHhccCCHHH
Confidence 57889999999999977765433333
No 6
>d1tlha_ a.150.1.1 (A:) Anti-sigma factor AsiA {Bacteriophage T4 [TaxId: 10665]}
Probab=9.96 E-value=1.1e+02 Score=23.19 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=22.2
Q ss_pred chHHHHHHHHH-----HHHHHhhHHHHHHHHHH
Q 012114 413 LSLATFSSLLI-----EFVARLHNVVDSFEELS 440 (470)
Q Consensus 413 l~latfaSLLi-----E~varl~~vv~~veeL~ 440 (470)
.-.+|.||+|| |+|.+=++.|+=..|||
T Consensus 8 ~eIit~aSiLIK~~~edI~~~q~~FI~FLNE~G 40 (89)
T d1tlha_ 8 REIITVASILIKFSREDIVENRANFIAFLNEIG 40 (89)
T ss_dssp HHHHHHHHHHHHHTTHHHHHSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccHHHHHHhHHHHHHHHHHhC
Confidence 34789999999 56778888888777765
No 7
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.64 E-value=1.2e+02 Score=21.53 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=23.6
Q ss_pred hHHhHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHH
Q 012114 220 NYVKVSGALRHCAFMVMALHGCILSEIQAPAERRQVFR 257 (470)
Q Consensus 220 ~Y~kvg~~lR~ca~~v~AL~gcl~seiqap~~~r~~~~ 257 (470)
+|..|-.++..|..+|-.+-. -++|+++|..|.
T Consensus 24 nyL~I~~Ll~l~c~~vA~~ik-----gkt~eeiR~~f~ 56 (70)
T d1nexa1 24 NYLNIKPLLDAGCKVVAEMIR-----GRSPEEIRRTFN 56 (70)
T ss_dssp HHHTCHHHHHHHHHHHHHHHT-----TCCHHHHHHHHT
T ss_pred HHcCcHHHHHHHHHHHHHHHc-----cCCHHHHHHHhC
Confidence 567777788888777755422 368899988875
No 8
>d1mnta_ a.43.1.1 (A:) Mnt repressor {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=8.23 E-value=66 Score=23.29 Aligned_cols=25 Identities=12% Similarity=0.291 Sum_probs=18.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcCCCCC
Q 012114 421 LLIEFVARLHNVVDSFEELSEKANFKEP 448 (470)
Q Consensus 421 LLiE~varl~~vv~~veeL~~~A~Fk~~ 448 (470)
+=-|+|+||| +++++-+..++|++.
T Consensus 30 mNaEIV~rLe---~s~~~~~~~~~~~d~ 54 (66)
T d1mnta_ 30 MNSELLQIVQ---DALSKPSPVTGYRND 54 (66)
T ss_dssp THHHHHHHHH---HHHHCCCCSSSCCCS
T ss_pred hhHHHHHHHH---HHhcCCCCchHHHhH
Confidence 3459999998 567777777777765
No 9
>d1b3qa1 a.30.2.1 (A:293-354) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]}
Probab=6.82 E-value=1.1e+02 Score=21.09 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=12.9
Q ss_pred HHHhhHHHHHHHHHH
Q 012114 426 VARLHNVVDSFEELS 440 (470)
Q Consensus 426 varl~~vv~~veeL~ 440 (470)
+.|||.++|-|.||.
T Consensus 8 ~~kLD~LmnlvGELv 22 (62)
T d1b3qa1 8 IEKLDNLMDLMGELV 22 (62)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 579999999999984
No 10
>d1vh6a_ a.24.19.1 (A:) Flagellar export chaperone FliS {Bacillus subtilis [TaxId: 1423]}
Probab=6.72 E-value=4.4e+02 Score=19.14 Aligned_cols=25 Identities=8% Similarity=0.056 Sum_probs=20.3
Q ss_pred hHHhHHHHHHHHHHHHHHhhhhhhc
Q 012114 220 NYVKVSGALRHCAFMVMALHGCILS 244 (470)
Q Consensus 220 ~Y~kvg~~lR~ca~~v~AL~gcl~s 244 (470)
.|.+-+..+.+|-.++..|.++|..
T Consensus 29 d~~~~~~~~~ka~~Ii~~L~~sLd~ 53 (102)
T d1vh6a_ 29 DMERKNENLIKAQNIIQELNFTLNR 53 (102)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4456677889999999999999964
Done!