Query 012115
Match_columns 470
No_of_seqs 195 out of 752
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 23:12:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012115.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012115hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00262 Calreticulin: Calreti 100.0 3E-140 6E-145 1072.3 16.6 352 32-389 1-367 (367)
2 KOG0675 Calnexin [Posttranslat 100.0 3E-136 6E-141 1060.6 31.7 430 7-444 4-464 (558)
3 KOG0674 Calreticulin [Posttran 100.0 4E-112 8E-117 841.8 27.2 346 11-415 5-359 (406)
4 PF00262 Calreticulin: Calreti 100.0 3.8E-35 8.3E-40 300.6 2.0 120 222-347 217-338 (367)
5 KOG0675 Calnexin [Posttranslat 100.0 1.6E-32 3.4E-37 286.8 17.0 221 94-357 169-394 (558)
6 KOG0674 Calreticulin [Posttran 99.9 1.8E-24 3.8E-29 216.6 15.0 259 84-389 21-314 (406)
7 PF06439 DUF1080: Domain of Un 65.1 1.1E+02 0.0023 27.7 12.7 142 37-208 5-153 (185)
8 PF07172 GRP: Glycine rich pro 43.6 20 0.00043 31.2 2.5 22 1-23 1-22 (95)
9 PF03213 Pox_P35: Poxvirus P35 32.9 39 0.00084 35.6 3.0 32 438-469 293-324 (325)
10 PF13117 Cag12: Cag pathogenic 30.8 10 0.00022 34.2 -1.3 49 53-102 46-97 (113)
11 PF07210 DUF1416: Protein of u 29.7 76 0.0017 27.5 3.8 27 94-121 5-31 (85)
12 PHA02688 ORF059 IMV protein VP 28.0 55 0.0012 34.5 3.2 34 436-469 289-322 (323)
13 KOG3285 Spindle assembly check 26.1 29 0.00062 34.0 0.7 25 245-269 158-182 (203)
14 PF14083 PGDYG: PGDYG protein 26.0 73 0.0016 28.2 3.1 58 42-102 16-85 (102)
15 PF10262 Rdx: Rdx family; Int 21.2 1.2E+02 0.0025 24.7 3.3 23 186-208 35-57 (76)
16 PF07691 PA14: PA14 domain; I 20.7 99 0.0022 26.8 3.0 26 183-208 59-84 (145)
No 1
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=100.00 E-value=3e-140 Score=1072.34 Aligned_cols=352 Identities=59% Similarity=1.159 Sum_probs=264.2
Q ss_pred eeeecccCcc--cCCCceeccCC------CccceEEEeCCC----CCCCCceeecCcccceeeecccCCCccCCCCcEEE
Q 012115 32 TILYESFDES--FEGRWIVSQKD------EYKGVWKHSKSE----GHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVL 99 (470)
Q Consensus 32 ~~F~E~Fd~~--w~~rWv~S~~~------~y~GkW~l~~~~----~~~D~GLv~~~~ak~yaIS~kl~kPf~~~~k~LVv 99 (470)
|||+|+|++. |.+|||+|+++ +|.|+|+++++. .++|+||||+++|||||||++|++||++++|+|||
T Consensus 1 v~F~E~F~~~~~~~~rWv~S~~~k~~~~~~y~G~W~~~~~~~~~~~~~DkGLv~~~~ak~yaIS~kl~kPf~~~~k~LVv 80 (367)
T PF00262_consen 1 VYFFETFDDGDDWKSRWVQSEAKKDDEIAKYDGKWELEAGKWYPGFEGDKGLVTKSDAKHYAISAKLDKPFSNKDKDLVV 80 (367)
T ss_dssp EEEEE---SGGGGGGTEEE--SSST--------EEEEEB-SSTSSTTTTBEEEEESSSEEEEEEEEEEEEE-STTS-EEE
T ss_pred CeEeEecCCCCcccCceeeCCCcCcCccccCceEEEEecccccCCCcCceeeEeccchhhhhhhhhCCCccccCCCcEEE
Confidence 6999999874 99999999766 569999999983 37899999999999999999999999999999999
Q ss_pred EEEEEecCccccCCceeEecCCCCCCCccc-ccCCCCCeEEEEccCccCCCCeEEEEEecCCCCCCcccccccCCCCCC-
Q 012115 100 QYEVRLQNGLECGGAYLKYLRPQEAGWVSK-EFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSV- 177 (470)
Q Consensus 100 QYeVk~q~~idCGGaYIKLl~~~~~~~~~~-~f~~~tpY~IMFGPD~CG~~~kvh~i~~~~np~~g~~~e~~~~~~~~~- 177 (470)
|||||||++|+|||||||||+.. .++. +|+++|||+||||||+||++++|||||||+||+|++++|+|+++++..
T Consensus 81 QYeVK~q~~idCGGaYIKLL~~~---~~~~~~f~~~TpY~IMFGPD~CG~~~kvHfI~~~~nP~~~~~~e~~l~~~p~~~ 157 (367)
T PF00262_consen 81 QYEVKFQQGIDCGGAYIKLLPAS---FDQEENFSDKTPYSIMFGPDKCGSSNKVHFIFRHKNPITGEIEEKHLKKPPISC 157 (367)
T ss_dssp EEEEEETT--SEEE--EEEEBTT---SSGGGG-STTS-ESEEEEEEEESTTEEEEEEEEEE-TTTEETTEEEE-SSSSB-
T ss_pred EEEEEeecceeccceEEEEecCc---cchhhhcCCCCCceEEeCCccCCCCceEEEEEEecCCCCCcccceecccCCccc
Confidence 99999999999999999999843 4555 999999999999999999999999999999999999999999999875
Q ss_pred CCCCCCceEEEEEecCCceEEEecCeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCccccCccCCCCCCCCCCCCCC
Q 012115 178 PSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERAKIPDPDAVKPEDWDED 257 (470)
Q Consensus 178 ~~D~~tHlYTLIi~pdntyei~IDg~~~~~G~L~~~~df~p~~~ppk~I~DP~d~KP~DWdd~~~I~Dp~~~KPeDWde~ 257 (470)
.+|++||||||||+|||||||+|||+++++|||+ +||+|||+||++|+||+|+||+|||||++|+||+|+||+||||+
T Consensus 158 ~~D~~tHlYTLii~~dntyeI~IDg~~~~~G~L~--~df~Pp~~ppk~I~Dp~d~KP~DW~d~~~I~Dp~~~KPedWdE~ 235 (367)
T PF00262_consen 158 FTDKLTHLYTLIIRPDNTYEIRIDGEVVKSGSLL--EDFDPPFNPPKEIDDPNDKKPEDWDDREKIPDPNAKKPEDWDED 235 (367)
T ss_dssp HHSSSEEEEEEEEETTTEEEEEETTEEEEEEEHH--HHSE--ESS-SCEE-TTT--TTT-TTTSEEC-SSTT--TTTSSS
T ss_pred ccCCCcceEEEEEcCCCeEEEEECCEEeeccccc--cccccCcCChhcccCccccCCcchhhhcccCCccccCccccccc
Confidence 5899999999999999999999999999999999 78999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCccCCCCCcCCCCCCccCCCCCCCCCCCCCCcCCc
Q 012115 258 APMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPH 337 (470)
Q Consensus 258 ~p~~I~Dp~a~KP~dWde~ep~~I~DP~~~KPedWdd~~~G~w~~P~I~NP~~~~~~gcG~W~~P~I~NP~ykG~W~pp~ 337 (470)
+|++|+||+|+||++|+|+||++|+||+|+||+|||+++||+|+||+|+||+|.. .|||+|++|||.||+|||+|+|||
T Consensus 236 ~p~~I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~-~gCG~w~~p~i~Np~YkG~W~pp~ 314 (367)
T PF00262_consen 236 EPEFIPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKE-PGCGEWKPPMIKNPNYKGKWKPPM 314 (367)
T ss_dssp --SEEE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTT-S-BSS----EEE-TT--SS----E
T ss_pred CcccccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccC-CCccccccccccCccccCCccccc
Confidence 9999999999999999999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCC-CCcccceeeEEEeEeecCceEeEEEE
Q 012115 338 IDNPNYKGIWKPQQIPNPNYFELDKP-DFEPIAAVGIEIWTMQDGILFDNILI 389 (470)
Q Consensus 338 I~NP~YkG~W~P~~I~NP~Y~~d~~p-~~~~i~~iGfElW~~~~g~~FDNI~i 389 (470)
|+||+|||+|+||+|+||+|+++.+| .+.+|++||||||||++|++||||||
T Consensus 315 I~NP~YkG~W~p~~I~NP~y~~d~~p~~~~~i~~ig~ElW~~~~~~~FDNi~i 367 (367)
T PF00262_consen 315 IPNPNYKGEWKPRKIPNPDYFEDPNPYNFEPIGAIGFELWQMSSGIIFDNILI 367 (367)
T ss_dssp EE-TT---S----EEE-TT--SSTTTT--S-EEEEEEEEEESSS-EEEEEEEE
T ss_pred cCCccccccccccccCCCcccCCCCccccCceeEEEEEEEeccCCceeeeEEC
Confidence 99999999999999999999999999 68999999999999999999999997
No 2
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-136 Score=1060.61 Aligned_cols=430 Identities=57% Similarity=1.000 Sum_probs=390.3
Q ss_pred hHHHHHHHHHHHhhhcccccCCC------------cceeeecccCcc--cCCCceeccCC---------CccceEEEeCC
Q 012115 7 VSLRFALLLFAAFVSFQLISASD------------DATILYESFDES--FEGRWIVSQKD---------EYKGVWKHSKS 63 (470)
Q Consensus 7 ~~~~~~~~v~~~~~~~~~~~~~~------------~~~~F~E~Fd~~--w~~rWv~S~~~---------~y~GkW~l~~~ 63 (470)
+++++++++|++++.+...+... -+.-|+|+|+.+ +. |||.|.++ +|.|+|.++++
T Consensus 4 ~~~~~~~lLli~~v~~~~~~~~~~~~e~~~~~~~~ykspf~d~Fd~~~~~~-rWi~S~akk~d~~~ei~kY~G~W~~ee~ 82 (558)
T KOG0675|consen 4 LMLLFLFLLLIAAVDGNDDDYEDTCTEPSVFSKESYKSPFADHFDGGTAST-RWILSWAKKDDIDDEIAKYDGVWDLEEP 82 (558)
T ss_pred HHHHHHHHHHHHHhhccccccccccccccccccccccCcchhcccccccce-eeeeeecccccccchhhhccceeeeccC
Confidence 35666777777777776553111 112277778753 34 89999874 89999999986
Q ss_pred C---CCCCCceeecCcccceeeecccCCCccCCCCcEEEEEEEEecCccccCCceeEecCCCCCCCcccccCCCCCeEEE
Q 012115 64 E---GHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIM 140 (470)
Q Consensus 64 ~---~~~D~GLv~~~~ak~yaIS~kl~kPf~~~~k~LVvQYeVk~q~~idCGGaYIKLl~~~~~~~~~~~f~~~tpY~IM 140 (470)
. .++|+|||+++.|||||||+.|++||++..++||||||||+|+|++|||||||||+.+.....+.+|+++|||+||
T Consensus 83 ~~~~~~~D~GLvvkskakhhaI~a~L~~P~~~~~~plVVQYEvk~qeg~eCGGAYlKLLs~~~~~~~l~~f~dktpy~Im 162 (558)
T KOG0675|consen 83 PKSHLAGDYGLVVKSKAKHHAISAELEEPFNFKEKPLVVQYEVKFQEGLECGGAYLKLLSQGTAGENLKNFDDKTPYTIM 162 (558)
T ss_pred ccccCCcccceEeeccchhhHHHhhhcCCcccCCCCeEEEEEEecCCCcccchhHHHhhcccccccchhccCCCCCeEEE
Confidence 4 4899999999999999999999999999999999999999999999999999999986667889999999999999
Q ss_pred EccCccCCCCeEEEEEecCCCCCCcccccccCCCCC----CCCCCCCceEEEEEecCCceEEEecCeeeccccccccCCC
Q 012115 141 FGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPS----VPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDF 216 (470)
Q Consensus 141 FGPD~CG~~~kvh~i~~~~np~~g~~~e~~~~~~~~----~~~D~~tHlYTLIi~pdntyei~IDg~~~~~G~L~~~~df 216 (470)
||||+||.+++|||||||+||+||+++|||++.|+. ..+|++||||||||+|||||+|||||++|+.|||+ .||
T Consensus 163 FGPDKCG~~~kvhFIf~hknp~tG~~~ekh~~~pp~~l~~~~~d~~tHLYTLvl~pd~sfeI~vDg~vv~~G~ll--~Df 240 (558)
T KOG0675|consen 163 FGPDKCGETNKVHFIFRHKNPITGEISEKHLKAPPSSLKKPFDDKLTHLYTLVLKPDNTFEIRVDGKVVYKGSLL--TDF 240 (558)
T ss_pred eCccccCCcccEEEEEeeccCCCCeeehhhccCCCcccccccccCCceeEEEEecCCCeEEEEecCcEEEecccc--ccc
Confidence 999999999999999999999999999999999998 56799999999999999999999999999999999 799
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCccCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcC
Q 012115 217 QPPLIPEKTIPDPDDKKPEDWDERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEE 296 (470)
Q Consensus 217 ~p~~~ppk~I~DP~d~KP~DWdd~~~I~Dp~~~KPeDWde~~p~~I~Dp~a~KP~dWde~ep~~I~DP~~~KPedWdd~~ 296 (470)
.||++||++|+||+|.||+|||+|++||||+|+||+||||++|.+|+|++|+||++|+|+||++|+||+|+||+||++++
T Consensus 241 ~Ppv~Pp~eI~Dp~d~KP~dWDer~kIpDpnAvKPdDWDE~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~ 320 (558)
T KOG0675|consen 241 EPPVTPPKEIPDPSDKKPEDWDERAKIPDPNAVKPDDWDEDAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEE 320 (558)
T ss_pred CCCCCCccccCCcccCCccchhhhhcCCCcccCCccccCcCCCccCCCccccCCccccccCCcccCCcccCCCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCCCCcCCCCCCccCCCCCCCCCCCCCCcCCccCCCCCCCCCCCCCCCCCCCCCCCCC-CCcccceeeEEE
Q 012115 297 DGEWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKP-DFEPIAAVGIEI 375 (470)
Q Consensus 297 ~G~w~~P~I~NP~~~~~~gcG~W~~P~I~NP~ykG~W~pp~I~NP~YkG~W~P~~I~NP~Y~~d~~p-~~~~i~~iGfEl 375 (470)
+|+|++|+|.||+|..++|||+|++|||.||+|||+|.+|||.||+|+|+|+||+|+||+||++.+| .+.+|.+|||||
T Consensus 321 dGeWeap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~pmI~NP~y~G~W~PRkI~NPdyfEd~~p~~~~pIsavglEl 400 (558)
T KOG0675|consen 321 DGEWEAPMIINPKCKEASGCGEWKPPMINNPNYKGKWILPMIDNPNYQGIWKPRKIPNPDYFEDDKPFTLTPISAVGLEL 400 (558)
T ss_pred cCccccccccCchhhcCCCCCcccCcccCCCccCCCCccccccCccccCccccccCCCcccccccCcccccchhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 799999999999
Q ss_pred eEeecCceEeEEEEeCCHHHHHHHHHhhcCCcchHHHHhhhcccccccccchhhccCccchhhHHHHHH
Q 012115 376 WTMQDGILFDNILISKDEKVAESYRASAWKPKFDVEKEKLKRVPRANKRTVVKRKKRPRRKKLLLLLLV 444 (470)
Q Consensus 376 W~~~~g~~FDNI~i~~d~~~A~~~~~~t~~~k~~~e~~~~~~e~~~~~~~~~~~k~~p~~~~~~~~~~~ 444 (470)
|+|+++++|||||||+|+++|+.+++.||..|..++++....++.++.+.+ .|.-....|+.++
T Consensus 401 WsMs~~IlfdNi~i~~~~e~a~~~~~~tw~~K~~~~~e~~~~~~~~~~~~~-----~~~~w~~~i~~~~ 464 (558)
T KOG0675|consen 401 WSMSSNILFDNIIITKDIEVAEDIANFTWLLKAAAEREKPFVQQVMEAAEG-----HPWLWAIYILTLL 464 (558)
T ss_pred hhcCCCceeceeEEeccHHHHHHhhhhceeeehhhcccchHHHHHHhhccc-----cchHHHHHHHHhh
Confidence 999999999999999999999999999999998777766544444444443 5554444444433
No 3
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-112 Score=841.83 Aligned_cols=346 Identities=43% Similarity=0.824 Sum_probs=316.4
Q ss_pred HHHHHHHHhhhcccccCCCcceeeecccC--cccCCCceeccCCC-ccceEEEeCCCC----CCCCceeecCcccceeee
Q 012115 11 FALLLFAAFVSFQLISASDDATILYESFD--ESFEGRWIVSQKDE-YKGVWKHSKSEG----HEDYGLLVGEPAKKYAIV 83 (470)
Q Consensus 11 ~~~~v~~~~~~~~~~~~~~~~~~F~E~Fd--~~w~~rWv~S~~~~-y~GkW~l~~~~~----~~D~GLv~~~~ak~yaIS 83 (470)
+.+|+|+++|.++ ++.|||.|.|. ++|+.|||+|++++ ..|.|.+++|.+ ..|+||+|+++|||||||
T Consensus 5 ~~~~~ll~~v~~~-----sa~Vyf~E~F~d~~~w~~rwv~skhk~~~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~s 79 (406)
T KOG0674|consen 5 FWVLCLLALVALA-----SAEVYFKEEFLDEDGWENRWVQSKHKSRDFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAIS 79 (406)
T ss_pred HHHHHHHHHHHHH-----hhhhhhhhhhcCCCCceEEEEEeeccccccCceEeccccccCcccccccccccccceeeeee
Confidence 4556666777777 56799999994 58999999999986 789999999864 459999999999999999
Q ss_pred cccCCCccCCCCcEEEEEEEEecCccccCCceeEecCCCCCCCcccccCCCCCeEEEEccCccCC-CCeEEEEEecCCCC
Q 012115 84 KELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGA-TNKVHFILKHKNPK 162 (470)
Q Consensus 84 ~kl~kPf~~~~k~LVvQYeVk~q~~idCGGaYIKLl~~~~~~~~~~~f~~~tpY~IMFGPD~CG~-~~kvh~i~~~~np~ 162 (470)
++|+ ||+|++|+|||||+|||+|.|+|||||||||+ .++|+.+|+++|||.||||||+||+ |+|||+|++|++.
T Consensus 80 a~F~-~FsnK~kTLv~q~tVkheQ~~dcgggyiKl~~---~d~Dq~~f~ges~y~iMfGPDICG~~tkKVhvil~ykg~- 154 (406)
T KOG0674|consen 80 AKFK-PFSNKGKTLVIQFTVKHEQKIDCGGGYIKLFP---ADLDQTDFHGESPYNIMFGPDICGFGTKKVHVILNYKGK- 154 (406)
T ss_pred cccc-cccccCceEEEEEEecccccccCCceeEEeee---cccchhhcCCCcccccccCCcccCCCCceEEEEEecccc-
Confidence 9995 79999999999999999999999999999997 5689999999999999999999997 8999999999874
Q ss_pred CCcccccccCCCCCCCCCCCCceEEEEEecCCceEEEecCeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCccccCc
Q 012115 163 SGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERAK 242 (470)
Q Consensus 163 ~g~~~e~~~~~~~~~~~D~~tHlYTLIi~pdntyei~IDg~~~~~G~L~~~~df~p~~~ppk~I~DP~d~KP~DWdd~~~ 242 (470)
+|++++.++|++|.+|||||||||||+||+|+|||+.+.+|||. .||+ |+||+.|.||.++||+|||+|++
T Consensus 155 -----nhlikK~i~Ck~D~~tHlYTlIlRPd~TYeVkIDn~~~esGsle--~DWd--ll~~KKikdP~a~KPedWDer~~ 225 (406)
T KOG0674|consen 155 -----NHLIKKDIRCKDDELTHLYTLILRPDATYEVKIDNQQVESGSLE--DDWD--LLPPKKIKDPDAKKPEDWDEREY 225 (406)
T ss_pred -----cchhccccccccCCcceeEEEEecCCCeeEEEEcccccccCccc--cccc--cccccccCCccccCcccchhhcc
Confidence 58999999999999999999999999999999999999999999 5565 89999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCccCCCCCcCCCCCCccCCC
Q 012115 243 IPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGEWKRP 322 (470)
Q Consensus 243 I~Dp~~~KPeDWde~~p~~I~Dp~a~KP~dWde~ep~~I~DP~~~KPedWdd~~~G~w~~P~I~NP~~~~~~gcG~W~~P 322 (470)
|+||+++||+||+ .|++|+||+++||+||++++||+|++ |
T Consensus 226 I~DpeD~Kp~dwe---------------------~pehipDpdakKpedWddemDGEWe~-------------------P 265 (406)
T KOG0674|consen 226 IPDPEDKKPQDWE---------------------KPEHIPDPDAKKPEDWDDEMDGEWEA-------------------P 265 (406)
T ss_pred CCCccccCccccc---------------------cccccCCcccCCcccccccccCCcCC-------------------C
Confidence 9999999999985 47788888888888888888766555 5
Q ss_pred CCCCCCCCCCCcCCccCCCCCCCCCCCCCCCCCCCCCCCCC-CCcccceeeEEEeEeecCceEeEEEEeCCHHHHHHHHH
Q 012115 323 MKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKP-DFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRA 401 (470)
Q Consensus 323 ~I~NP~ykG~W~pp~I~NP~YkG~W~P~~I~NP~Y~~d~~p-~~~~i~~iGfElW~~~~g~~FDNI~i~~d~~~A~~~~~ 401 (470)
||+||+|+|+|+|+.|.||+|||.|.+++|.||+|..+... .|.+|++||||||||.||+|||||+||||+++|+++|+
T Consensus 266 ~i~nPey~gewkPkqi~np~yKg~w~hp~i~npey~~d~~ly~~~ni~~lgldLWQVKSgtIFDN~LitdD~eyA~k~~~ 345 (406)
T KOG0674|consen 266 MIPNPEYKGEWKPKQIKNPAYKGKWIHPEIDNPEYPDDPELYHYENIGVLGLDLWQVKSGTIFDNFLITDDEEYAEKFAN 345 (406)
T ss_pred CCCCccccCccCcccccCccccceeeccccCCCcCCCCcceeeecccceeeeeEEEeecceeecceEecCCHHHHHHHHH
Confidence 77889999999999999999999999999999999987765 78999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHhh
Q 012115 402 SAWKPKFDVEKEKL 415 (470)
Q Consensus 402 ~t~~~k~~~e~~~~ 415 (470)
+||+..+..|+++.
T Consensus 346 eTwg~~k~~ek~~~ 359 (406)
T KOG0674|consen 346 ETWGKTKDAEKEMK 359 (406)
T ss_pred hhhcccccHHHHhh
Confidence 99998888887653
No 4
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=100.00 E-value=3.8e-35 Score=300.56 Aligned_cols=120 Identities=49% Similarity=0.909 Sum_probs=38.6
Q ss_pred CCCCCCCCCCCCCCCccc--cCccCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCC
Q 012115 222 PEKTIPDPDDKKPEDWDE--RAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGE 299 (470)
Q Consensus 222 ppk~I~DP~d~KP~DWdd--~~~I~Dp~~~KPeDWde~~p~~I~Dp~a~KP~dWde~ep~~I~DP~~~KPedWdd~~~G~ 299 (470)
..++|+||+|+||+|||| +++|+||+|+||++|+|++|++|+||+|+||+||||++...+.-|...+|.|.. .+||+
T Consensus 217 d~~~I~Dp~~~KPedWdE~~p~~I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~-~gCG~ 295 (367)
T PF00262_consen 217 DREKIPDPNAKKPEDWDEDEPEFIPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKE-PGCGE 295 (367)
T ss_dssp TTSEEC-SSTT--TTTSSS--SEEE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTT-S-BSS
T ss_pred hhcccCCccccCcccccccCcccccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccC-CCccc
Confidence 444555555555555553 234555555555555555555555555555555555555555555555555555 45555
Q ss_pred CCCCccCCCCCcCCCCCCccCCCCCCCCCCCCCCcCCccCCCCCCCCC
Q 012115 300 WEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIW 347 (470)
Q Consensus 300 w~~P~I~NP~~~~~~gcG~W~~P~I~NP~ykG~W~pp~I~NP~YkG~W 347 (470)
|++|+|.||+| +|+|++|||.||+|||+|+|++|+||+|..+-
T Consensus 296 w~~p~i~Np~Y-----kG~W~pp~I~NP~YkG~W~p~~I~NP~y~~d~ 338 (367)
T PF00262_consen 296 WKPPMIKNPNY-----KGKWKPPMIPNPNYKGEWKPRKIPNPDYFEDP 338 (367)
T ss_dssp ----EEE-TT-------SS----EEE-TT---S----EEE-TT--SST
T ss_pred cccccccCccc-----cCCccccccCCccccccccccccCCCcccCCC
Confidence 55555555554 35555555555555555555555555554433
No 5
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-32 Score=286.76 Aligned_cols=221 Identities=34% Similarity=0.617 Sum_probs=169.4
Q ss_pred CCcEEEEEEEEecCccccCCceeEecCCCCCCCcc-cccCCC-C-CeEEEEccCccCCCCeEEEEEecCCCCCCcccccc
Q 012115 94 DGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVS-KEFDNE-S-PYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHH 170 (470)
Q Consensus 94 ~k~LVvQYeVk~q~~idCGGaYIKLl~~~~~~~~~-~~f~~~-t-pY~IMFGPD~CG~~~kvh~i~~~~np~~g~~~e~~ 170 (470)
+.+.-|||-.||-+.++ |-|.--+-.. ...++ .-|.+. | -||++.-||. .+.+-+.++-.+.|++.+.
T Consensus 169 G~~~kvhFIf~hknp~t--G~~~ekh~~~-pp~~l~~~~~d~~tHLYTLvl~pd~-----sfeI~vDg~vv~~G~ll~D- 239 (558)
T KOG0675|consen 169 GETNKVHFIFRHKNPIT--GEISEKHLKA-PPSSLKKPFDDKLTHLYTLVLKPDN-----TFEIRVDGKVVYKGSLLTD- 239 (558)
T ss_pred CCcccEEEEEeeccCCC--CeeehhhccC-CCcccccccccCCceeEEEEecCCC-----eEEEEecCcEEEecccccc-
Confidence 45678999999999995 7765443222 22222 344343 3 2999999974 4666666655545544321
Q ss_pred cCCCCCCCCCCCCceEEEEEecCCceEEEecCeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCccccC--ccCCCCC
Q 012115 171 LKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERA--KIPDPDA 248 (470)
Q Consensus 171 ~~~~~~~~~D~~tHlYTLIi~pdntyei~IDg~~~~~G~L~~~~df~p~~~ppk~I~DP~d~KP~DWdd~~--~I~Dp~~ 248 (470)
.. ||. .|- +.|......+- +||+ .+.+|+||++.||+|||+++ +|+|+++
T Consensus 240 f~-Ppv--------------~Pp----~eI~Dp~d~KP-----~dWD----er~kIpDpnAvKPdDWDE~~P~~Ipd~da 291 (558)
T KOG0675|consen 240 FE-PPV--------------TPP----KEIPDPSDKKP-----EDWD----ERAKIPDPNAVKPDDWDEDAPLSIPDEDA 291 (558)
T ss_pred cC-CCC--------------CCc----cccCCcccCCc-----cchh----hhhcCCCcccCCccccCcCCCccCCCccc
Confidence 11 111 111 23444444433 5665 68999999999999999976 8999999
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCccCCCCCcCCCCCCccCCCCCCCCC
Q 012115 249 VKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGEWKRPMKRNPA 328 (470)
Q Consensus 249 ~KPeDWde~~p~~I~Dp~a~KP~dWde~ep~~I~DP~~~KPedWdd~~~G~w~~P~I~NP~~~~~~gcG~W~~P~I~NP~ 328 (470)
+||++|.+++|.+|+||+|.||+||++++...+..|....|.+=...+||+|.+|||.||++ +|+|.+|||.||+
T Consensus 292 vkP~~Wledep~~I~DP~A~KPedWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I~NP~Y-----KGkw~~pmI~NP~ 366 (558)
T KOG0675|consen 292 VKPEGWLEDEPEYIPDPEAQKPEDWDEEEDGEWEAPMIINPKCKEASGCGEWKPPMINNPNY-----KGKWILPMIDNPN 366 (558)
T ss_pred cCCccccccCCcccCCcccCCCCCCCccccCccccccccCchhhcCCCCCcccCcccCCCcc-----CCCCccccccCcc
Confidence 99999999999999999999999999998888888888888888889999999999999999 7999999999999
Q ss_pred CCCCCcCCccCCCCCCCCCCCCCCCCCCC
Q 012115 329 YKGKWHAPHIDNPNYKGIWKPQQIPNPNY 357 (470)
Q Consensus 329 ykG~W~pp~I~NP~YkG~W~P~~I~NP~Y 357 (470)
|+|+|+||.|+||+|...-+|-. -+|=|
T Consensus 367 y~G~W~PRkI~NPdyfEd~~p~~-~~pIs 394 (558)
T KOG0675|consen 367 YQGIWKPRKIPNPDYFEDDKPFT-LTPIS 394 (558)
T ss_pred ccCccccccCCCcccccccCccc-ccchh
Confidence 99999999999999999988863 34544
No 6
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.8e-24 Score=216.60 Aligned_cols=259 Identities=29% Similarity=0.471 Sum_probs=165.9
Q ss_pred cccCCCccCCCCcEEEEEEEEecCccccCCceeEecCCCCCCCc-cccc--CCCCCeEEEEccCc----cCCCCeEEEEE
Q 012115 84 KELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWV-SKEF--DNESPYMIMFGPDK----CGATNKVHFIL 156 (470)
Q Consensus 84 ~kl~kPf~~~~k~LVvQYeVk~q~~idCGGaYIKLl~~~~~~~~-~~~f--~~~tpY~IMFGPD~----CG~~~kvh~i~ 156 (470)
-.|..-|++.+.-.+-+..+++.+. |+|+|+++.+.-...-+ -+.. +.+--|.+|++-=. -|.|--++|-+
T Consensus 21 Vyf~E~F~d~~~w~~rwv~skhk~~--~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~sa~F~~FsnK~kTLv~q~tV 98 (406)
T KOG0674|consen 21 VYFKEEFLDEDGWENRWVQSKHKSR--DFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAISAKFKPFSNKGKTLVIQFTV 98 (406)
T ss_pred hhhhhhhcCCCCceEEEEEeecccc--ccCceEeccccccCcccccccccccccceeeeeecccccccccCceEEEEEEe
Confidence 3567788888899999999999877 99999998864221101 0112 22335788876221 12233466666
Q ss_pred ecCCCCC--CcccccccCCCCCCCCCC----CCceEEEEEecCCceEEEecCeeecccc----------cccc-----CC
Q 012115 157 KHKNPKS--GEYIEHHLKNPPSVPSDK----LTHVYTAILKPDNELRILIDGEEKQKAN----------FLAA-----DD 215 (470)
Q Consensus 157 ~~~np~~--g~~~e~~~~~~~~~~~D~----~tHlYTLIi~pdntyei~IDg~~~~~G~----------L~~~-----~d 215 (470)
+|...+. |-|. +.+. +-.|+ -..-|..+.-|| |.|-..++-. |+.. .|
T Consensus 99 kheQ~~dcgggyi-Kl~~----~d~Dq~~f~ges~y~iMfGPD------ICG~~tkKVhvil~ykg~nhlikK~i~Ck~D 167 (406)
T KOG0674|consen 99 KHEQKIDCGGGYI-KLFP----ADLDQTDFHGESPYNIMFGPD------ICGFGTKKVHVILNYKGKNHLIKKDIRCKDD 167 (406)
T ss_pred cccccccCCceeE-Eeee----cccchhhcCCCcccccccCCc------ccCCCCceEEEEEecccccchhccccccccC
Confidence 6644332 2222 1111 11121 123455555555 3332221111 1100 00
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCccccCccCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 012115 216 -FQPPLIPEKTIPDPDDKKPEDWDERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDD 294 (470)
Q Consensus 216 -f~p~~~ppk~I~DP~d~KP~DWdd~~~I~Dp~~~KPeDWde~~p~~I~Dp~a~KP~dWde~ep~~I~DP~~~KPedWdd 294 (470)
| +.+ =-.|-.|+++-----|... =-+++..+|||..+|++|.||+|.||++|+ +.++|+||+.+||++|+.
T Consensus 168 ~~-tHl--YTlIlRPd~TYeVkIDn~~---~esGsle~DWdll~~KKikdP~a~KPedWD--er~~I~DpeD~Kp~dwe~ 239 (406)
T KOG0674|consen 168 EL-THL--YTLILRPDATYEVKIDNQQ---VESGSLEDDWDLLPPKKIKDPDAKKPEDWD--EREYIPDPEDKKPQDWEK 239 (406)
T ss_pred Cc-cee--EEEEecCCCeeEEEEcccc---cccCccccccccccccccCCccccCcccch--hhccCCCccccCcccccc
Confidence 0 000 0014444443322222211 136788999999999999999999999995 479999999999999995
Q ss_pred cCCCCCCCCccCCCCCcCCCCCCccCCCCCCCCCCCCCCcCCccCCCCCCCCCCCCCCCCCCCCCCC-CCC-----Cccc
Q 012115 295 EEDGEWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELD-KPD-----FEPI 368 (470)
Q Consensus 295 ~~~G~w~~P~I~NP~~~~~~gcG~W~~P~I~NP~ykG~W~pp~I~NP~YkG~W~P~~I~NP~Y~~d~-~p~-----~~~i 368 (470)
+.+|++|.+ ++|..|+-+..|+|.||||+||.|+|+|+|++|.||+|++-| +|. |.+.
T Consensus 240 -------pehipDpda---------kKpedWddemDGEWe~P~i~nPey~gewkPkqi~np~yKg~w~hp~i~npey~~d 303 (406)
T KOG0674|consen 240 -------PEHIPDPDA---------KKPEDWDDEMDGEWEAPMIPNPEYKGEWKPKQIKNPAYKGKWIHPEIDNPEYPDD 303 (406)
T ss_pred -------ccccCCccc---------CCcccccccccCCcCCCCCCCccccCccCcccccCccccceeeccccCCCcCCCC
Confidence 348999998 788999999999999999999999999999999999999977 663 4444
Q ss_pred ceeeEEEeEeecCceEeEEEE
Q 012115 369 AAVGIEIWTMQDGILFDNILI 389 (470)
Q Consensus 369 ~~iGfElW~~~~g~~FDNI~i 389 (470)
..| ..|.||.+
T Consensus 304 ~~l----------y~~~ni~~ 314 (406)
T KOG0674|consen 304 PEL----------YHYENIGV 314 (406)
T ss_pred cce----------eeecccce
Confidence 444 68888865
No 7
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=65.08 E-value=1.1e+02 Score=27.75 Aligned_cols=142 Identities=11% Similarity=0.195 Sum_probs=67.1
Q ss_pred ccCcccCCCceeccCCCccceEEEeCCCCCCCCcee---ecCcccceeeecccCCCccCCCCcEEEEEEEEecCccccCC
Q 012115 37 SFDESFEGRWIVSQKDEYKGVWKHSKSEGHEDYGLL---VGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGG 113 (470)
Q Consensus 37 ~Fd~~w~~rWv~S~~~~y~GkW~l~~~~~~~D~GLv---~~~~ak~yaIS~kl~kPf~~~~k~LVvQYeVk~q~~idCGG 113 (470)
=|+..-.+.|.........|.|.++.+. |+ .......+.++. +.| ++++|+.++|+.. .|.
T Consensus 5 lf~g~~l~gW~~~~~~~~~~~~~v~dG~------l~~~~~~~~~~~~l~~~---~~~----~df~l~~d~k~~~---~~~ 68 (185)
T PF06439_consen 5 LFNGKDLDGWKIYGGGWFEGGWSVKDGV------LVSNGSSGSGGGYLYTD---KKF----SDFELEVDFKITP---GGN 68 (185)
T ss_dssp SS-SSCGTTEEETTSSSETTTEEEETTE------EE-GGGGESSS--EEES---SEB----SSEEEEEEEEE-T---T-E
T ss_pred eECCCCHHHCeeCCCCccccCcEeeCCE------EEecccCCCCcceEEEC---Ccc----ccEEEEEEEEECC---CCC
Confidence 3664445789888765556778776542 23 122222233333 223 4588999999833 223
Q ss_pred ceeEecCCCCCCCcccccCCCCCeEEEEccCccCCCCeEEEEEecCCCCCCccccc---cc-CCCCCCCCCCCCceEEEE
Q 012115 114 AYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEH---HL-KNPPSVPSDKLTHVYTAI 189 (470)
Q Consensus 114 aYIKLl~~~~~~~~~~~f~~~tpY~IMFGPD~CG~~~kvh~i~~~~np~~g~~~e~---~~-~~~~~~~~D~~tHlYTLI 189 (470)
+-|-+.... .........-|++-..++.++ ....-.+|.+... .. ..........--|=|+++
T Consensus 69 sGi~~r~~~----~~~~~~~~~gy~~~i~~~~~~---------~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~W~~~~I~ 135 (185)
T PF06439_consen 69 SGIFFRAQS----PGDGQDWNNGYEFQIDNSGGG---------TGLPNSTGSLYDEPPWQLEPSVNVAIPPGEWNTVRIV 135 (185)
T ss_dssp EEEEEEESS----ECCSSGGGTSEEEEEE-TTTC---------STTTTSTTSBTTTB-TCB-SSS--S--TTSEEEEEEE
T ss_pred eEEEEEecc----ccCCCCcceEEEEEEECCCCc---------cCCCCccceEEEeccccccccccccCCCCceEEEEEE
Confidence 334444210 011112223488888887776 1111223433210 00 111111222334444555
Q ss_pred EecCCceEEEecCeeeccc
Q 012115 190 LKPDNELRILIDGEEKQKA 208 (470)
Q Consensus 190 i~pdntyei~IDg~~~~~G 208 (470)
++ .+++.+.|||+.+..-
T Consensus 136 ~~-g~~i~v~vnG~~v~~~ 153 (185)
T PF06439_consen 136 VK-GNRITVWVNGKPVADF 153 (185)
T ss_dssp EE-TTEEEEEETTEEEEEE
T ss_pred EE-CCEEEEEECCEEEEEE
Confidence 54 6789999999988654
No 8
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=43.59 E-value=20 Score=31.24 Aligned_cols=22 Identities=27% Similarity=0.107 Sum_probs=11.9
Q ss_pred CcchhhhHHHHHHHHHHHhhhcc
Q 012115 1 MVQRMAVSLRFALLLFAAFVSFQ 23 (470)
Q Consensus 1 ~~~~~~~~~~~~~~v~~~~~~~~ 23 (470)
|. +|..+|++++|+++++||..
T Consensus 1 Ma-SK~~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLISSE 22 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHHhh
Confidence 55 66655555555555555543
No 9
>PF03213 Pox_P35: Poxvirus P35 protein; InterPro: IPR004900 The Poxvirus P35 protein is an immunodominant envelope protein. It binds to heparan sulphate on the cell surface to provide virion attachment to target cell [].; GO: 0019031 viral envelope
Probab=32.86 E-value=39 Score=35.60 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=26.0
Q ss_pred hHHHHHHhhhHHHHhhhhhhHHHHHHHhhhcc
Q 012115 438 LLLLLLVGGDAIIKQMEAGCLWLLAALLVDYQ 469 (470)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (470)
.++.++|+=-++|.++..+-||+||.+|+-|-
T Consensus 293 g~~iil~ii~l~iF~vnSkllWFLaG~l~tyi 324 (325)
T PF03213_consen 293 GVIIILFIIILVIFDVNSKLLWFLAGILFTYI 324 (325)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHhHHhee
Confidence 34556666667899999999999999999874
No 10
>PF13117 Cag12: Cag pathogenicity island protein Cag12
Probab=30.78 E-value=10 Score=34.16 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=30.3
Q ss_pred Cccc-eE--EEeCCCCCCCCceeecCcccceeeecccCCCccCCCCcEEEEEE
Q 012115 53 EYKG-VW--KHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYE 102 (470)
Q Consensus 53 ~y~G-kW--~l~~~~~~~D~GLv~~~~ak~yaIS~kl~kPf~~~~k~LVvQYe 102 (470)
.-.| .| ++..... +|..+--.+-+++||+++.=..-+...+.+++.+|.
T Consensus 46 ~~~~~~W~y~~~~~~~-~~~~~~~~~~~~~yalAH~~~iIv~~~~~~~~~~~K 97 (113)
T PF13117_consen 46 FVNGQNWTYSIVLPNF-KDRLIDPEQIVVFYALAHSAKIIVLTGDGNLFFQYK 97 (113)
T ss_pred cccCCCceEEEEecCC-cccccCchhheEeeeeeccccEEEEcCCHHHHHHHH
Confidence 4468 89 5554443 444444445688999999876655555555555543
No 11
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=29.69 E-value=76 Score=27.47 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=23.4
Q ss_pred CCcEEEEEEEEecCccccCCceeEecCC
Q 012115 94 DGTVVLQYEVRLQNGLECGGAYLKYLRP 121 (470)
Q Consensus 94 ~k~LVvQYeVk~q~~idCGGaYIKLl~~ 121 (470)
.|..|||=.|+ ..+---||||+.||..
T Consensus 5 ~ke~VItG~V~-~~G~Pv~gAyVRLLD~ 31 (85)
T PF07210_consen 5 EKETVITGRVT-RDGEPVGGAYVRLLDS 31 (85)
T ss_pred cceEEEEEEEe-cCCcCCCCeEEEEEcC
Confidence 56789999999 7777779999999964
No 12
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=28.00 E-value=55 Score=34.47 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=27.4
Q ss_pred hhhHHHHHHhhhHHHHhhhhhhHHHHHHHhhhcc
Q 012115 436 KKLLLLLLVGGDAIIKQMEAGCLWLLAALLVDYQ 469 (470)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (470)
...++.++|+=-++|.....+-||+||.+|+-|-
T Consensus 289 v~gviiil~ii~l~IF~vnSkLlWFLaG~l~tyi 322 (323)
T PHA02688 289 VIGVIIILFIIVLLIFDVNSKLLWFLAGTLFTYI 322 (323)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHhHHhee
Confidence 3445566666678889999999999999999874
No 13
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.05 E-value=29 Score=33.98 Aligned_cols=25 Identities=44% Similarity=0.824 Sum_probs=14.7
Q ss_pred CCCCCCCCCCCCCCCCccCCCCCCC
Q 012115 245 DPDAVKPEDWDEDAPMEIEDEDAVK 269 (470)
Q Consensus 245 Dp~~~KPeDWde~~p~~I~Dp~a~K 269 (470)
|-+..-|++|+|+.|..|.||.+++
T Consensus 158 dkD~~vP~~W~eS~~~~I~n~e~Vq 182 (203)
T KOG3285|consen 158 DKDTEVPEKWDESGPKLIQNPEAVQ 182 (203)
T ss_pred CCCccCCcchhcCCCeEecChhhEE
Confidence 3444556666666666666666544
No 14
>PF14083 PGDYG: PGDYG protein
Probab=26.04 E-value=73 Score=28.20 Aligned_cols=58 Identities=24% Similarity=0.582 Sum_probs=33.0
Q ss_pred cCCCceeccCCCccceEEEeCCC-CCCCCceeecCcccceeeecccCCCccCCC-----------CcEEEEEE
Q 012115 42 FEGRWIVSQKDEYKGVWKHSKSE-GHEDYGLLVGEPAKKYAIVKELDEPLSLKD-----------GTVVLQYE 102 (470)
Q Consensus 42 w~~rWv~S~~~~y~GkW~l~~~~-~~~D~GLv~~~~ak~yaIS~kl~kPf~~~~-----------k~LVvQYe 102 (470)
.-+|||+|... +.-+..-.... ..++.|...... --.+++.++.||+..- .+-++||.
T Consensus 16 tGdRWvVsr~r-Fd~ky~~~~~~l~~G~~g~Y~nrp--~vvla~~m~~~f~iarS~~gdvl~g~agDw~mqya 85 (102)
T PF14083_consen 16 TGDRWVVSRER-FDAKYVPARPSLAHGQPGAYRNRP--VVVLARQMDEPFSIARSAGGDVLHGKAGDWLMQYA 85 (102)
T ss_pred CCCeEEeeHHH-cccccccccccccCCCCcceecCC--eeeeccccCcchhhhhhcCCCccccCCcceEEEeC
Confidence 45899999863 22222222222 245555554433 2367888888887632 25677776
No 15
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=21.22 E-value=1.2e+02 Score=24.71 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=17.8
Q ss_pred EEEEEecCCceEEEecCeeeccc
Q 012115 186 YTAILKPDNELRILIDGEEKQKA 208 (470)
Q Consensus 186 YTLIi~pdntyei~IDg~~~~~G 208 (470)
.+|.....+.|||.+||+.+-+.
T Consensus 35 v~~~~~~~G~FEV~v~g~lI~SK 57 (76)
T PF10262_consen 35 VELSPGSTGAFEVTVNGELIFSK 57 (76)
T ss_dssp EEEEEESTT-EEEEETTEEEEEH
T ss_pred EEEEeccCCEEEEEEccEEEEEe
Confidence 46677779999999999987654
No 16
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=20.74 E-value=99 Score=26.81 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=22.2
Q ss_pred CceEEEEEecCCceEEEecCeeeccc
Q 012115 183 THVYTAILKPDNELRILIDGEEKQKA 208 (470)
Q Consensus 183 tHlYTLIi~pdntyei~IDg~~~~~G 208 (470)
+-.||+.+..|+.+++.|||+.+...
T Consensus 59 ~G~y~f~~~~~d~~~l~idg~~vid~ 84 (145)
T PF07691_consen 59 TGTYTFSLTSDDGARLWIDGKLVIDN 84 (145)
T ss_dssp SEEEEEEEEESSEEEEEETTEEEEEC
T ss_pred CceEEEEEEecccEEEEECCEEEEcC
Confidence 45699999999999999999988544
Done!