BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>012117
MDCFQTVSQLKGSMCHAFLLFIAWLFSFQDVVALHNVLGPSHVSSTSELANPPTTGLFEP
IEISPAVIPPYPYAGEPLPPMYPTFPTTYEPNLTGRCPVNFSAMSSIMQKTASDCSQPLA
PLVGNVICCPQLGSLLHIFQGFYSMKSDKLVLQNTVANDCFSDILSILASRGANHTIPTL
CSVTSLNLTGGSCPVKDVVSFEKIVNTSKLLDACSTVDPLKECCRPICQPAIMEAALQIS
GTQMTFTENKNFVGGSDQVDALNDCKGVAYSYLSSKLSAEAANSAFRILSACKVNKVCPL
DFKQPSEVIEACRNVAAPSPSCCSSLNAYIAGVQKQMLITNKQAIICAAVFGSMLRKEGV
MTNIYELCDVDLKDFSIQAYGQQGCLLRSLPADVVLDNITGYSFTCDLTDNIAAPWPASS
SASSLSLCAPEMSLPALPTSETLKNPGCRGCVLEVLVPIFSIFAVSALLY

High Scoring Gene Products

Symbol, full name Information P value
AT2G30700 protein from Arabidopsis thaliana 1.1e-160
AT1G61900 protein from Arabidopsis thaliana 1.1e-69

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  012117
        (470 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2054472 - symbol:AT2G30700 "AT2G30700" species...  1565  1.1e-160  1
TAIR|locus:2036788 - symbol:AT1G61900 "AT1G61900" species...   706  1.1e-69   1


>TAIR|locus:2054472 [details] [associations]
            symbol:AT2G30700 "AT2G30700" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002685 HOGENOM:HOG000084383
            ProtClustDB:CLSN2679931 EMBL:AY093146 EMBL:AK118977 IPI:IPI00519560
            RefSeq:NP_850153.1 UniGene:At.19836 PRIDE:Q8RWE3
            EnsemblPlants:AT2G30700.1 GeneID:817621 KEGG:ath:AT2G30700
            TAIR:At2g30700 InParanoid:Q8RWE3 OMA:FDPIEIS PhylomeDB:Q8RWE3
            Genevestigator:Q8RWE3 Uniprot:Q8RWE3
        Length = 480

 Score = 1565 (556.0 bits), Expect = 1.1e-160, P = 1.1e-160
 Identities = 312/471 (66%), Positives = 362/471 (76%)

Query:     1 MDCFQTVSQLKGSMCHAFLLFIAWLFSFQDVVALHNVLGP-SHVSSTSELANPPTTGLFE 59
             M   +TV  LKG + + FLLFI WL SFQDV A H+ L   S  S+TSELANPP  G+  
Sbjct:     8 MGSLETVCWLKGCLVYRFLLFIIWLSSFQDVAA-HDKLNEHSSRSTTSELANPPGIGVSG 66

Query:    60 PIEISPAVIXXXXXXXXXXXX-MYPTFPTTYEPNLTGRCPVNFSAMSSIMQKTASDCSQP 118
             PI++SP+VI             MYPTFP TYEP LTG+CP +F A+SS++   ASDCSQP
Sbjct:    67 PIQVSPSVIPKYASPALPWTPPMYPTFPDTYEPKLTGKCPTDFQAISSVIDTAASDCSQP 126

Query:   119 LAPLVGNVICCPQLGSLLHIFQGFYSMKSDKLVLQNTVANDCFSDILSILASRGANHTIP 178
              A LVGNVICCPQ  SLLHIFQG +++KS+KLVL + VA DCFSDI+SIL SR AN TIP
Sbjct:   127 FAALVGNVICCPQFVSLLHIFQGQHNVKSNKLVLPDAVATDCFSDIVSILVSRRANMTIP 186

Query:   179 TLCSVTSLNLTGGSCPVKDVVSFEKIVNTSKLLDACSTVDPLKECCRPICQPAIMEAALQ 238
              LCSVTS NLTGGSCPV DV +FEK+VN+SKLLDAC TVDPLKECCRPICQPAIMEAAL 
Sbjct:   187 ALCSVTSSNLTGGSCPVTDVTTFEKVVNSSKLLDACRTVDPLKECCRPICQPAIMEAALI 246

Query:   239 ISGTQMTFTENKNFVGGSDQVDALNDCKGVAYSYLSSKLSAEAANSAFRILSACKVNKVC 298
             ISG QMT  + K  + GS+ V+A+NDCK V +SYLS KL A+ AN+AFRILS+CKVNK C
Sbjct:   247 ISGHQMTVGD-KIPLAGSNNVNAINDCKNVVFSYLSRKLPADKANAAFRILSSCKVNKAC 305

Query:   299 PLDFKQPSEVIEACRNVAAPSPSCCSSLNAYIAGVQKQMLITNKQAIICAAVFGSMLRKE 358
             PL+FK+P+EVI+ACRNVAAPSPSCCSSLNAYI+G+Q QMLITNKQAI+CA V GSMLRK 
Sbjct:   306 PLEFKEPTEVIKACRNVAAPSPSCCSSLNAYISGIQNQMLITNKQAIVCATVIGSMLRKG 365

Query:   359 GVMTNIYELCDVDLKDFSIQAYG-QQGCLLRSLPADVVLDNITGYSFTCDLTDNIXXXXX 417
             GVMTNIYELCDVDLKDFS+QAYG QQGCLLRS PAD++ DN +GYSFTCDLTDNI     
Sbjct:   366 GVMTNIYELCDVDLKDFSVQAYGMQQGCLLRSYPADLIFDNTSGYSFTCDLTDNIAAPWP 425

Query:   418 XXXXXXXXXXXXXEMSLPALPTSETLKNPG-CRGCV--LEVLVPIFSIFAV 465
                          EMSLPALPTS+T+KN G C G V  L ++V +F ++ V
Sbjct:   426 SSSSMSSLSLCAPEMSLPALPTSQTIKNHGFCNGGVGALRLIVLVFLLYVV 476


>TAIR|locus:2036788 [details] [associations]
            symbol:AT1G61900 "AT1G61900" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0031225 "anchored to membrane" evidence=TAS]
            [GO:0046658 "anchored to plasma membrane" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0009506 "plasmodesma"
            evidence=IDA] EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009506
            GO:GO:0046658 EMBL:AC004392 EMBL:BT002490 EMBL:AK230285
            EMBL:BT006577 IPI:IPI00521285 IPI:IPI00525242 PIR:T02135
            RefSeq:NP_176382.2 RefSeq:NP_974068.1 UniGene:At.21877 PaxDb:Q8GUI4
            PRIDE:Q8GUI4 EnsemblPlants:AT1G61900.1 GeneID:842486
            KEGG:ath:AT1G61900 TAIR:At1g61900 eggNOG:NOG258019
            HOGENOM:HOG000084383 InParanoid:Q8GUI4 OMA:VNIPERP PhylomeDB:Q8GUI4
            ProtClustDB:CLSN2679931 Genevestigator:Q8GUI4 GermOnline:AT1G61900
            Uniprot:Q8GUI4
        Length = 433

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 154/385 (40%), Positives = 210/385 (54%)

Query:    58 FEPIEISPAVIXXXXXXXXXXXXMYPTFPTTYEPNLTGRCPVNFSAMSSIMQKTASDCSQ 117
             F P EISP               M P   +T  P L+G C +NFSA  S++Q T+ +C  
Sbjct:    32 FLP-EISPDTSPQPFLPFIAPSPMVPYINSTM-PKLSGLCSLNFSASESLIQTTSHNCWT 89

Query:   118 PLAPLVGNVICCPQLGSLLHIFQGFYSMKSDKLVLQNTVANDCFSDILSILASRGANHTI 177
               APL+ NV+CCPQL + L I  G  S ++  L L  T +  C SD+  IL  +GA+  +
Sbjct:    90 VFAPLLANVMCCPQLDATLTIILGKASKETGLLALNRTQSKHCLSDLEQILVGKGASGQL 149

Query:   178 PTLCSVTSLNLTGGSCPVKDVVSFEKIVNTSKLLDACSTVDPLKECCRPICQPAIMEAAL 237
               +CS+ S NLT  SCPV +V  FE  V+T+KLL AC  +DP+KECC   CQ AI++AA 
Sbjct:   150 NKICSIHSSNLTSSSCPVINVDEFESTVDTAKLLLACEKIDPVKECCEEACQNAILDAAT 209

Query:   238 QIS-GTQMTFTENKNFVGGSDQVDALNDCKGVAYSYLSSKLSAEAANSAFRILSACKVNK 296
              IS     T T+N          D +NDCK V   +L++KL         R L+ CK+N+
Sbjct:   210 NISLKASETLTDNS---------DRINDCKNVVNRWLATKLDPSRVKETLRGLANCKINR 260

Query:   297 VCPLDFKQPSEVIEACRNVAAPSPSCCSSLNAYIAGVQKQMLITNKQAIICAAVFGSMLR 356
             VCPL F     +   C N  +    CC ++ +Y++ +QKQ LITN QA+ CA   G+ L+
Sbjct:   261 VCPLVFPHMKHIGGNCSNELSNQTGCCRAMESYVSHLQKQTLITNLQALDCATSLGTKLQ 320

Query:   357 KEGVMTNIYELCDVDLKDFSIQAYGQQ-GCLLRSLPADVVLDNITGYSFTCDLTDNIXXX 415
             K  +  NI+ +C + LKDFS+Q   Q+ GCLL SLP+D + D  TG SFTCDL DNI   
Sbjct:   321 KLNITKNIFSVCHISLKDFSLQVGNQESGCLLPSLPSDAIFDKDTGISFTCDLNDNIPAP 380

Query:   416 XXXXXXXXXXXXXXXEMSLPALPTS 440
                             + +PALP +
Sbjct:   381 WPSSSLSSASTCKK-PVRIPALPAA 404


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.134   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      470       440   0.00089  118 3  11 22  0.50    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  251 KB (2133 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  35.97u 0.18s 36.15t   Elapsed:  00:00:02
  Total cpu time:  35.97u 0.18s 36.15t   Elapsed:  00:00:02
  Start:  Mon May 20 15:50:27 2013   End:  Mon May 20 15:50:29 2013

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