BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012121
(470 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O08781|ZMAT3_RAT Zinc finger matrin-type protein 3 OS=Rattus norvegicus GN=Zmat3
PE=2 SV=1
Length = 289
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 81/212 (38%), Gaps = 41/212 (19%)
Query: 70 WCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQMPNSGSQPEVSQ 129
+C+LC V N+ + + H GK H + LR + N C + + + P V
Sbjct: 71 FCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYA---ANSCPPPARMSSVAEPVATPLVPV 127
Query: 130 PEKVEECRE--KQPLESLPSQTLLGNASNET--------------------EMQKNTV-D 166
P +V C+ + L + L +AS + E Q ++ D
Sbjct: 128 PPQVGSCKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEAQSHSFSD 187
Query: 167 SVKEPQRKSRDQPDSRGCGSKRKMRGGRGGKYMRTNEGGP------RRPIEPPKPKGVIP 220
S + QR++R + GS+ KM R Y + GP R+ I V P
Sbjct: 188 SAEAGQRRTRKE------GSEFKMVTTRRNMYTVQSNSGPYFNARSRQRIPRDLAMCVTP 241
Query: 221 ---LICELCNVKCESQVVFDSHLVGKKHLANV 249
C +CNV +V F HL K+H + V
Sbjct: 242 SGQFYCSMCNVGAGEEVEFRQHLESKQHKSKV 273
>sp|Q6DJ13|ZN830_XENTR Zinc finger protein 830 OS=Xenopus tropicalis GN=znf830 PE=2 SV=1
Length = 357
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 26/37 (70%)
Query: 221 LICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRA 257
L+C +CN++ +S++++ +H++GK+H V G +A
Sbjct: 45 LLCVVCNIQIKSELLWPAHILGKQHKEKVAELKGSKA 81
>sp|Q8BXJ8|Z385B_MOUSE Zinc finger protein 385B OS=Mus musculus GN=Znf385b PE=2 SV=1
Length = 482
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 44 AVPGQTSSSIPGQVPGAPTRPPPPMAWCELCRVDCNTLEILEQHKNGKRHK 94
A P ++++ PG V + + +C LC+V N+L LE H G +HK
Sbjct: 272 ASPSKSTNGAPGSVAESEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHK 322
>sp|Q569K4|Z385B_HUMAN Zinc finger protein 385B OS=Homo sapiens GN=ZNF385B PE=2 SV=1
Length = 471
Score = 37.0 bits (84), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 42 SAAVPGQTSSSIPGQVPGAPTRPPPPMAWCELCRVDCNTLEILEQHKNGKRHK 94
+A P ++++ PG V + + +C LC+V N+L LE H G +HK
Sbjct: 258 AATSPSKSTNGAPGTVVESEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHK 310
Score = 32.0 bits (71), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 68 MAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHAD 102
++CE+C + N+ + H NGK H++ ++ +D
Sbjct: 33 FSFCEVCNIQLNSAAQAQVHSNGKSHRKRVKQLSD 67
>sp|Q96PM9|Z385A_HUMAN Zinc finger protein 385A OS=Homo sapiens GN=ZNF385A PE=2 SV=1
Length = 366
Score = 36.6 bits (83), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 68 MAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADL 103
+ +C LC+V N+L LE H G +HK L + L
Sbjct: 180 LLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGL 215
Score = 32.7 bits (73), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 205 GPRRPIEPPKPKGVIPLICELCNVKCESQVVFDSHLVGKKH 245
GP P EP P CE+CNVK S+V H+ ++H
Sbjct: 225 GPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRH 265
>sp|Q6PBT9|Z385B_DANRE Zinc finger protein 385B OS=Danio rerio GN=znf385b PE=2 SV=1
Length = 492
Score = 35.8 bits (81), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 68 MAWCELCRVDCNTLEILEQHKNGKRHKRNL 97
+ +C LC+V N+L LE H G +HK L
Sbjct: 305 LLYCSLCKVAVNSLSQLEAHNTGSKHKTML 334
>sp|O59811|YJVF_SCHPO Zinc finger protein C550.15c OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPCC550.15c PE=1 SV=1
Length = 463
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 223 CELCNVKCESQVVFDSHLVGKKHLANVKRF 252
CE+CN K S+ + SH+ KKH N+ +F
Sbjct: 72 CEVCNKKFYSEGAYSSHMASKKHRDNLSKF 101
>sp|Q3MHS2|ZN830_RAT Zinc finger protein 830 OS=Rattus norvegicus GN=Znf830 PE=2 SV=1
Length = 370
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 207 RRPIEPP--KPKGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHG 254
R+ IE P K + L C LCN +S++++ +H++GK+H V G
Sbjct: 35 RKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRERVAELKG 84
>sp|Q8R1N0|ZN830_MOUSE Zinc finger protein 830 OS=Mus musculus GN=Znf830 PE=1 SV=1
Length = 363
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 207 RRPIEPP--KPKGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHG 254
R+ IE P K + L C LCN +S++++ +H++GK+H V G
Sbjct: 35 RKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRERVAELKG 84
>sp|Q96NB3|ZN830_HUMAN Zinc finger protein 830 OS=Homo sapiens GN=ZNF830 PE=1 SV=2
Length = 372
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 207 RRPIEPP--KPKGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHG 254
R+ IE P K + L C LCN +S++++ +H++GK+H V G
Sbjct: 35 RKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAELKG 84
>sp|Q6P9P6|KIF11_MOUSE Kinesin-like protein KIF11 OS=Mus musculus GN=Kif11 PE=2 SV=1
Length = 1052
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 255 HRALYGEAALQSLYPASFNSLSSSVITQVQQGVNDPQVV---LAQLLTYVLSQ----AQA 307
H+ L+G +L +S ++L + T ++ V+ P+ V ++Q+ +L + AQ+
Sbjct: 562 HKTLFG-----NLMSSSVSALDTITTTALESLVSIPENVSARVSQISDMILEEQSLAAQS 616
Query: 308 QAQAPGLLAEQLRGLAAQIPGLVGMVAPAPAPGSSQETQYQHDFRTQRSMATTEEGSKNT 367
++ GL+ E + L L +VAP+ + Q QH FR ++A E K
Sbjct: 617 KSVLQGLIDELVTDL---FTSLKTIVAPSVVSILNINKQLQHIFRASSTVAEKVEDQKRE 673
Query: 368 V 368
+
Sbjct: 674 I 674
>sp|O54836|ZMAT3_MOUSE Zinc finger matrin-type protein 3 OS=Mus musculus GN=Zmat3 PE=2
SV=1
Length = 290
Score = 33.9 bits (76), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 82/215 (38%), Gaps = 46/215 (21%)
Query: 70 WCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKC-IAGQQNIQMPNSGSQPEVS 128
+C+LC V N+ + + H GK H + LR + N C + + + + P V
Sbjct: 71 FCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYA---ANSCPPPARVSSVVAEPVATPLVP 127
Query: 129 QPEKVEECRE--KQPLESLPSQTLLGNASNET--------------------EMQKNTV- 165
P +V C+ + L + L +AS + E Q ++
Sbjct: 128 VPPQVGSCKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEAQSHSFS 187
Query: 166 DSVKEPQRKSRDQPDSRGCGSKRKMRGGR---------GGKYM--RTNEGGPRRPIEPPK 214
DS + QR++R + GS+ KM R G Y R+ + PR
Sbjct: 188 DSAEAGQRRTRKE------GSEFKMVATRRNMNPVQSNSGPYFNARSRQRIPRDLAMCVT 241
Query: 215 PKGVIPLICELCNVKCESQVVFDSHLVGKKHLANV 249
P G C +CNV +V F HL K+H + V
Sbjct: 242 PSGQ--FYCSMCNVGAGEEVEFRQHLESKQHKSKV 274
>sp|Q6PR54|RIF1_MOUSE Telomere-associated protein RIF1 OS=Mus musculus GN=Rif1 PE=1 SV=2
Length = 2419
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 317 EQLRGLAAQIPGLVGMVAPAPAPGSSQETQYQHDFRTQRSMAT---TEEGSKNTVMVEAE 373
E L+ IP L + +SQ+T + F + SM + TE+ ++ +++ E
Sbjct: 1067 EVLKTKRCDIPALYNNL------DASQDTLFSAQFSQEESMESLTLTEKPKEDAKIIKEE 1120
Query: 374 DQQQSIATDLESPETVGIETKEKNASLP 401
+ +I ++PE GI+ +NASLP
Sbjct: 1121 QMESTIFIHQDAPENCGIDEHSENASLP 1148
>sp|Q6AXX3|Z385D_RAT Zinc finger protein 385D OS=Rattus norvegicus GN=Znf385d PE=2 SV=1
Length = 395
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 68 MAWCELCRVDCNTLEILEQHKNGKRHKRNL 97
+ +C LC+V N+ LE H +G +HK L
Sbjct: 203 LLYCSLCKVAVNSASQLEAHNSGTKHKTML 232
>sp|Q0VD35|ZMAT4_BOVIN Zinc finger matrin-type protein 4 OS=Bos taurus GN=ZMAT4 PE=2 SV=1
Length = 229
Score = 33.5 bits (75), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 40 TPSAAVPGQTSSSIPGQVPGAPTRPPPPMA-----WCELCRVDCNTLEILEQHKNGKRHK 94
TP SS P +V AP P P +C LC N + +QH +GK+HK
Sbjct: 111 TPLKTTATPLSSLKPPRVDTAPVVPSPYQRRDSDRYCGLCAAWFNNPLMAQQHYDGKKHK 170
Query: 95 RNLRTHADLQNL 106
+N A L+ L
Sbjct: 171 KNAARVALLEQL 182
Score = 32.0 bits (71), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 192 GGRGGKYMRTNEGGPRRPIEPPKPKGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKR 251
GG K +R+ G ++ K C LCN+ S VV DSH GK H +K
Sbjct: 53 GGCPAKRLRSENGNDADMVDKNK-------CCTLCNMSFTSAVVADSHYQGKIHAKRLKL 105
Query: 252 FHG 254
G
Sbjct: 106 LLG 108
>sp|Q9UL40|ZN346_HUMAN Zinc finger protein 346 OS=Homo sapiens GN=ZNF346 PE=1 SV=1
Length = 294
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Query: 223 CELCNVKCESQVVFDSHLVGKKHLANVK---------RFHGHRALYGEAALQSLYPASFN 273
C +CN+ S VV SH +GK H N+K H +R + SL A+FN
Sbjct: 136 CPICNMTFSSPVVAQSHYLGKTHAKNLKLKQQSTKVEALHQNREMIDPDKFCSLCHATFN 195
>sp|Q63ZM9|ZN830_XENLA Zinc finger protein 830 OS=Xenopus laevis GN=znf830 PE=2 SV=1
Length = 356
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 203 EGGPRRPIEPP--KPKGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRALYG 260
E ++ IE P K + L C +CN +S++++ +H++GK+H V G +A
Sbjct: 25 ESSSKKRIESPLAKYNSLGHLSCVVCNSLIKSELLWPAHILGKQHKEKVAELKGTKATTS 84
Query: 261 EAALQSLYP 269
+ YP
Sbjct: 85 SPSNTIEYP 93
>sp|Q8AVN9|ZN346_XENLA Zinc finger protein 346 OS=Xenopus laevis GN=znf346 PE=1 SV=1
Length = 524
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 223 CELCNVKCESQVVFDSHLVGKKHLANVK 250
C +CN+ S VV +SH +GK H+ N++
Sbjct: 97 CPVCNMTFSSPVVAESHYIGKTHIKNLR 124
>sp|Q197D9|VF193_IIV3 Putative apoptosis inhibitor 021L OS=Invertebrate iridescent virus
3 GN=IIV3-021L PE=3 SV=1
Length = 206
Score = 33.1 bits (74), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 13/87 (14%)
Query: 34 GAISNSTPSAAVPGQTSSSIPGQVPGAPTRPPPPMAWCELCRVDCNTLEILEQHKNGKRH 93
G I NST + V Q S +P +P P CE C T KN +
Sbjct: 89 GTIKNSTSKSPVSNQPSPEEDEPIPDLTLKPLEPCTKCE-----CTTC-----MKNSIKQ 138
Query: 94 KRNLRTHADLQNLNK---CIAGQQNIQ 117
+ NL+ H ++ NL C+ Q N++
Sbjct: 139 EENLKVHQNILNLESKIMCVVCQANVR 165
>sp|Q9NXG0|CNTLN_HUMAN Centlein OS=Homo sapiens GN=CNTLN PE=2 SV=5
Length = 1405
Score = 33.1 bits (74), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 69 AWCELCRVDCNTLEILEQHKNGKRHKRNLRTH-----ADLQNLNKCIAGQQNIQMPNSGS 123
W EL E++ Q N + L+ H A +Q LN+C+A ++ Q+ SG
Sbjct: 611 VWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEQLFRSGE 670
Query: 124 QPEV--SQPEK 132
EV S PEK
Sbjct: 671 DDEVKRSTPEK 681
>sp|Q0IIC4|ZMAT3_BOVIN Zinc finger matrin-type protein 3 OS=Bos taurus GN=ZMAT3 PE=2 SV=1
Length = 289
Score = 33.1 bits (74), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 79/214 (36%), Gaps = 44/214 (20%)
Query: 70 WCELCRVDCNTLEILEQHKNGKRHKRNLRTH---------ADLQNLNKCIAGQQNIQMPN 120
+C+LC V N+ + + H GK H + LR + A + N + +A P
Sbjct: 71 YCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNAVEAVAAPAVSVPPQ 130
Query: 121 SGS-QP--EVSQPEKVEECREKQPLESLPSQTLLGNASNETEMQ-KNTVDSVKEPQRKSR 176
GS +P V + + C+ L + A + Q KN ++ + +S
Sbjct: 131 MGSFKPGGRVILATENDYCK-------LCDASFSSPAVAQAHYQGKNHAKRLRLAEAQSN 183
Query: 177 DQPDSRGCGSKRKMRGGRGGKYM---------RTNEGGPRRPIEPPKPKGVIP------- 220
DS G +R + G K M + N G P P+ + IP
Sbjct: 184 SFSDSSEVGQRRTRKEGNEYKMMPNRRNMYAVQNNSAG---PYFNPRSRQRIPRDLAMCV 240
Query: 221 -----LICELCNVKCESQVVFDSHLVGKKHLANV 249
C +CNV +V F HL K+H + V
Sbjct: 241 TPSGQFYCSMCNVGAGEEVEFRQHLESKQHKSKV 274
>sp|Q9UPR6|ZFR2_HUMAN Zinc finger RNA-binding protein 2 OS=Homo sapiens GN=ZFR2 PE=2 SV=3
Length = 939
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 71 CELCRVDCNTLEILEQHKNGKRHKRNLRTHADL 103
C+LC V C + H G +H++ + HA L
Sbjct: 321 CDLCAVSCTGADAYAAHIRGSKHQKVFKLHAKL 353
>sp|Q9BY12|SCAPE_HUMAN S phase cyclin A-associated protein in the endoplasmic reticulum
OS=Homo sapiens GN=SCAPER PE=1 SV=1
Length = 1399
Score = 32.7 bits (73), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 159 EMQKNTVDSVKEPQRKSRDQPDSRGCGSKRKMRGGRGGKYMRTNEGGPRRPIEPPKPKGV 218
E+QK E R+ +Q + R K K G++ T+ P E K
Sbjct: 740 ELQKKIQLKHDESIRRHMEQIEQR----KEKAAELSSGRHANTDYAPKLTPYERKKQ--- 792
Query: 219 IPLICELCNVKCESQVVFDSHLVGKKH 245
C LCNV S+V SH+ G+KH
Sbjct: 793 ----CSLCNVLISSEVYLFSHVKGRKH 815
>sp|Q9HA38|ZMAT3_HUMAN Zinc finger matrin-type protein 3 OS=Homo sapiens GN=ZMAT3 PE=1
SV=1
Length = 289
Score = 32.3 bits (72), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 76/209 (36%), Gaps = 34/209 (16%)
Query: 70 WCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKC--IAGQQNIQMPNSGSQPEV 127
+C+LC V N+ + + H GK H + LR + N C A N+ P + P V
Sbjct: 71 YCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYA---ANSCPPPARMSNVVEP--AATPVV 125
Query: 128 SQPEKVEECR--------EKQPLESLPSQTLLGNASNETEMQ-KNTVDSVKEPQRKSRDQ 178
P ++ + + L + A + Q KN ++ + +S
Sbjct: 126 PVPPQMGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEAQSNSF 185
Query: 179 PDSRGCGSKRKMRGGRGGKY------MRTNEGGPRRPIEPPKPKGVIP------------ 220
+S G +R + G K M T + P P+ + IP
Sbjct: 186 SESSELGQRRARKEGNEFKMMPNRRNMYTVQNNSAGPYFNPRSRQRIPRDLAMCVTPSGQ 245
Query: 221 LICELCNVKCESQVVFDSHLVGKKHLANV 249
C +CNV ++ F HL K+H + V
Sbjct: 246 FYCSMCNVGAGEEMEFRQHLESKQHKSKV 274
>sp|Q9JJN2|ZFHX4_MOUSE Zinc finger homeobox protein 4 OS=Mus musculus GN=Zfhx4 PE=1 SV=1
Length = 3550
Score = 32.3 bits (72), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 198 YMRTNEGGPRRPIEPPKPKGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRF 252
Y +T + PR +G P CE+CN ++ H+ KHL NV+
Sbjct: 674 YCKTGQPHPRLARGESYTRGYKPFRCEVCNYSTTTKGNLSIHMQSDKHLNNVQNL 728
>sp|A2AAJ9|OBSCN_MOUSE Obscurin OS=Mus musculus GN=Obscn PE=2 SV=2
Length = 8891
Score = 32.0 bits (71), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 407 ISSLENPDNTASASKCEVASGGEAVQQQHGDDLVDSENEQDL 448
+ +E P+ A+ +C ++S V+ +HGDD++ S N+ L
Sbjct: 3623 LKDVEVPEGKAATLRCVLSSVAAPVEWRHGDDVLKSSNKYSL 3664
>sp|Q9H898|ZMAT4_HUMAN Zinc finger matrin-type protein 4 OS=Homo sapiens GN=ZMAT4 PE=2
SV=1
Length = 229
Score = 32.0 bits (71), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 192 GGRGGKYMRTNEGGPRRPIEPPKPKGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKR 251
GG K +R+ G ++ K C LCN+ S VV DSH GK H +K
Sbjct: 53 GGCPAKRLRSENGSDADMVDKNK-------CCTLCNMSFTSAVVADSHYQGKIHAKRLKL 105
Query: 252 FHG 254
G
Sbjct: 106 LLG 108
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.128 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,747,570
Number of Sequences: 539616
Number of extensions: 8347385
Number of successful extensions: 31268
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 165
Number of HSP's that attempted gapping in prelim test: 30767
Number of HSP's gapped (non-prelim): 687
length of query: 470
length of database: 191,569,459
effective HSP length: 121
effective length of query: 349
effective length of database: 126,275,923
effective search space: 44070297127
effective search space used: 44070297127
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)