Query 012122
Match_columns 470
No_of_seqs 128 out of 1500
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 23:17:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012122.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012122hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02347 chap_CCT_zeta T-comp 100.0 2.4E-94 5.3E-99 757.6 55.3 465 1-468 65-531 (531)
2 TIGR02339 thermosome_arch ther 100.0 6E-93 1.3E-97 749.2 52.5 449 1-462 65-519 (519)
3 cd03343 cpn60 cpn60 chaperonin 100.0 1.9E-92 4.2E-97 746.1 52.7 449 1-462 64-516 (517)
4 cd03335 TCP1_alpha TCP-1 (CTT 100.0 3.1E-92 6.6E-97 744.5 52.4 451 1-464 57-527 (527)
5 cd03339 TCP1_epsilon TCP-1 (CT 100.0 3.1E-92 6.7E-97 744.4 51.8 450 1-461 72-526 (526)
6 TIGR02343 chap_CCT_epsi T-comp 100.0 3.9E-92 8.5E-97 742.5 52.4 451 1-462 76-531 (532)
7 cd03336 TCP1_beta TCP-1 (CTT o 100.0 8.5E-92 1.8E-96 738.9 54.9 450 1-464 64-515 (517)
8 PTZ00212 T-complex protein 1 s 100.0 6.8E-92 1.5E-96 741.5 54.1 451 1-465 76-528 (533)
9 TIGR02344 chap_CCT_gamma T-com 100.0 5.2E-92 1.1E-96 743.1 52.3 451 1-464 65-523 (525)
10 TIGR02342 chap_CCT_delta T-com 100.0 9.6E-92 2.1E-96 738.5 52.0 450 1-463 58-517 (517)
11 cd03340 TCP1_eta TCP-1 (CTT or 100.0 2.8E-91 6.1E-96 737.0 52.6 451 1-464 65-521 (522)
12 TIGR02341 chap_CCT_beta T-comp 100.0 5.5E-91 1.2E-95 731.8 54.3 452 1-466 65-518 (519)
13 TIGR02340 chap_CCT_alpha T-com 100.0 1.2E-90 2.6E-95 733.1 54.2 455 1-468 61-535 (536)
14 TIGR02345 chap_CCT_eta T-compl 100.0 2.2E-90 4.8E-95 729.0 51.7 452 1-464 66-521 (522)
15 cd03338 TCP1_delta TCP-1 (CTT 100.0 8.4E-90 1.8E-94 725.2 52.0 449 1-462 57-515 (515)
16 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 7.4E-89 1.6E-93 710.6 49.8 422 1-463 61-483 (484)
17 TIGR02346 chap_CCT_theta T-com 100.0 2E-88 4.4E-93 714.2 52.7 450 1-465 67-522 (531)
18 KOG0361 Chaperonin complex com 100.0 1.2E-90 2.6E-95 656.7 31.5 452 1-465 69-525 (543)
19 cd03337 TCP1_gamma TCP-1 (CTT 100.0 6.8E-86 1.5E-90 688.2 45.5 407 1-461 65-479 (480)
20 KOG0358 Chaperonin complex com 100.0 3E-86 6.4E-91 625.8 29.4 449 1-462 75-533 (534)
21 cd00309 chaperonin_type_I_II c 100.0 1.2E-83 2.7E-88 671.3 48.9 407 1-461 57-464 (464)
22 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 9.3E-84 2E-88 678.3 45.2 445 1-464 38-485 (485)
23 KOG0363 Chaperonin complex com 100.0 1E-84 2.3E-89 612.6 33.4 454 2-469 70-525 (527)
24 cd03341 TCP1_theta TCP-1 (CTT 100.0 6.3E-83 1.4E-87 664.6 47.5 409 1-462 57-471 (472)
25 COG0459 GroL Chaperonin GroEL 100.0 3E-82 6.6E-87 656.9 45.4 448 1-466 60-517 (524)
26 KOG0359 Chaperonin complex com 100.0 1.3E-82 2.7E-87 610.4 29.5 455 1-468 66-520 (520)
27 KOG0364 Chaperonin complex com 100.0 6.3E-82 1.4E-86 606.3 24.9 452 1-465 68-523 (527)
28 KOG0362 Chaperonin complex com 100.0 1.8E-77 3.9E-82 584.6 38.6 451 1-469 75-528 (537)
29 KOG0360 Chaperonin complex com 100.0 3.2E-79 6.9E-84 592.9 25.2 451 1-465 68-538 (545)
30 PRK12849 groEL chaperonin GroE 100.0 1.1E-76 2.4E-81 623.2 45.5 408 1-469 59-529 (542)
31 PRK00013 groEL chaperonin GroE 100.0 2.3E-76 5E-81 620.8 46.5 406 1-465 59-526 (542)
32 PTZ00114 Heat shock protein 60 100.0 5.6E-75 1.2E-79 613.3 48.0 407 1-466 71-543 (555)
33 cd03344 GroEL GroEL_like type 100.0 5.7E-75 1.2E-79 608.8 46.4 400 1-461 57-519 (520)
34 PRK12851 groEL chaperonin GroE 100.0 7.9E-75 1.7E-79 609.8 46.8 405 1-465 60-526 (541)
35 PRK12850 groEL chaperonin GroE 100.0 7.6E-75 1.7E-79 610.2 45.2 406 1-466 60-527 (544)
36 PRK12852 groEL chaperonin GroE 100.0 3.4E-74 7.4E-79 606.7 45.5 403 4-466 67-528 (545)
37 TIGR02348 GroEL chaperonin Gro 100.0 1.1E-73 2.4E-78 600.2 45.7 403 1-464 58-523 (524)
38 PRK14104 chaperonin GroEL; Pro 100.0 2.8E-72 6E-77 590.4 45.6 404 3-465 66-527 (546)
39 CHL00093 groEL chaperonin GroE 100.0 1.5E-72 3.3E-77 592.2 43.5 406 1-464 59-526 (529)
40 PLN03167 Chaperonin-60 beta su 100.0 3.6E-71 7.8E-76 585.0 41.7 409 1-466 115-584 (600)
41 KOG0357 Chaperonin complex com 100.0 2.3E-59 5E-64 437.5 18.4 324 4-465 71-398 (400)
42 KOG0356 Mitochondrial chaperon 100.0 1.6E-45 3.4E-50 366.1 24.5 401 2-465 78-539 (550)
43 cd03334 Fab1_TCP TCP-1 like do 100.0 6.5E-41 1.4E-45 322.1 27.2 231 100-346 17-257 (261)
44 cd03333 chaperonin_like chaper 100.0 4.1E-37 8.8E-42 288.0 24.6 208 84-342 2-209 (209)
45 KOG0230 Phosphatidylinositol-4 99.8 4E-20 8.7E-25 202.0 16.7 236 100-351 331-575 (1598)
46 COG3962 Acetolactate synthase 27.0 45 0.00098 34.7 2.3 40 326-367 216-255 (617)
47 PRK10343 RNA-binding protein Y 25.0 2.4E+02 0.0053 22.7 5.8 47 226-272 20-76 (97)
48 COG1433 Uncharacterized conser 22.5 3.6E+02 0.0077 22.7 6.6 41 227-268 67-107 (121)
49 PF02579 Nitro_FeMo-Co: Dinitr 21.1 2.2E+02 0.0047 21.9 4.9 33 227-261 55-87 (94)
50 PHA02591 hypothetical protein; 20.2 1.4E+02 0.003 23.0 3.2 37 34-70 46-82 (83)
No 1
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.4e-94 Score=757.63 Aligned_cols=465 Identities=72% Similarity=1.101 Sum_probs=436.9
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCC
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 80 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~ 80 (470)
|+++||+++|+.++|++||+++||||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.++++|+++++++. +.
T Consensus 65 i~i~hP~a~ll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~--~~ 142 (531)
T TIGR02347 65 MQIQHPTASMIARAATAQDDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTE--DE 142 (531)
T ss_pred ccccChHHHHHHHHHHHhhhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCC--CC
Confidence 6799999999999999999999999999999999999999999999999999999999999999999999997652 12
Q ss_pred CcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCCcEEEEeEEEecCCCCCCCc
Q 012122 81 PDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMK 160 (470)
Q Consensus 81 ~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~~~ 160 (470)
.+.+.|.++|+|+++||+.+.+.++|++++++|+..+.+.+..+|+++|+++++.|++.++|++++|++|++++.+|+|+
T Consensus 143 ~~~~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~ 222 (531)
T TIGR02347 143 VDRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMP 222 (531)
T ss_pred CCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCccccEEEeeEEEecCcCCCCCc
Confidence 36889999999999999999999999999999999997643358888999999999999999999999999999999999
Q ss_pred cccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-CCceEEEecCCCCHHH
Q 012122 161 RRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGN-DNNFVVINQKGIDPLS 239 (470)
Q Consensus 161 ~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~-~~~~vIi~~~~i~~~~ 239 (470)
++++||||++++++|++.+++.++.+.+++++|+..+++.|++++++++++|+++++..|... +.+++|+++++|+|.+
T Consensus 223 ~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a 302 (531)
T TIGR02347 223 RRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPS 302 (531)
T ss_pred eeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHH
Confidence 999999999999999999999999999999999999999999999999999999875433100 1234899999999999
Q ss_pred HHHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcccceEEEEEECCeeEEEEEccCCCCeeEEEeeCCCH
Q 012122 240 LDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPND 319 (470)
Q Consensus 240 l~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIii~g~t~ 319 (470)
++||.++||++++++++++|+|||++|||++++++++++++++|+|+.|++..+|+++|++|+++++++.+||+|||+|+
T Consensus 303 ~~~L~~~~I~~i~rv~~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TI~lrG~t~ 382 (531)
T TIGR02347 303 LDLLAKEGIMALRRAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNPKSCTILIKGPND 382 (531)
T ss_pred HHHHHHCCceEEccCCHHHHHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEcCCCCCeEEEEEeCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCCHH
Q 012122 320 HTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQ 399 (470)
Q Consensus 320 ~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d~~ 399 (470)
.+++|++|+++||++++++++++|++||||||+|++++.+| ++++...++++|+++++|++||+.||++|++|||+|+.
T Consensus 383 ~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l-~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~ 461 (531)
T TIGR02347 383 HTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHL-KEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQ 461 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHH-HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 99999999999999999999999999999999999999999 88888888999999999999999999999999999999
Q ss_pred HHHHHHHHhccC-CCeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCcCCCC
Q 012122 400 DVIIALKGEHDR-GNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRK 468 (470)
Q Consensus 400 ~~i~~l~~~~~~-~~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~~~~~ 468 (470)
+++.+|++.|.. +.++|+|+.+|++.||++.|||||+.+|+++|++|+|+|++|||||++|.++|...|
T Consensus 462 ~vl~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~~~~~~ 531 (531)
T TIGR02347 462 DTLVKLEDEHDEGGEVVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGRSMLK 531 (531)
T ss_pred HHHHHHHHHHHccCCceeeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCccccCC
Confidence 999999998854 367899999999999999999999999999999999999999999999998876543
No 2
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=6e-93 Score=749.20 Aligned_cols=449 Identities=37% Similarity=0.594 Sum_probs=428.9
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCC
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 80 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~ 80 (470)
|+++||+++|+++++++||+++||||||+|+|+++||+++.+|+++|+||+.|++||+.|++.++++|++++++++ .
T Consensus 65 l~~~hP~a~ll~~~a~~qd~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~---~ 141 (519)
T TIGR02339 65 MDIEHPAAKMLVEVAKTQDAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKIS---P 141 (519)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccC---c
Confidence 6799999999999999999999999999999999999999999999999999999999999999999999999885 3
Q ss_pred CcHHHHHHHHhHhcccccc-chhhhhHHHHHHHHhhhhcCC--Cc--cccccceEEEEecCCCcCCcEEEEeEEEecCCC
Q 012122 81 PDKEILKMVARTTLRTKLY-ESLADQLTDIVVNAVLCIRKP--EE--AIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSR 155 (470)
Q Consensus 81 ~~~~~l~~va~tsl~sk~~-~~~~~~l~~l~~~a~~~~~~~--~~--~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~ 155 (470)
.+++.|.++|+|+++||+. +.+.++|++++++|+.++.+. ++ .+|+++|+|++++|++.++|++++|++|++++.
T Consensus 142 ~~~~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~ 221 (519)
T TIGR02339 142 EDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPV 221 (519)
T ss_pred ccHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCC
Confidence 3578999999999999998 789999999999999999641 22 588999999999999999999999999999999
Q ss_pred CCCCccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCC
Q 012122 156 HPDMKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGI 235 (470)
Q Consensus 156 ~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i 235 (470)
++.|++.++||||++++++||++++++++++.+++++++.++++.|++++++++++|.+.+ +++|+++++|
T Consensus 222 ~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g---------~~lvi~~~~I 292 (519)
T TIGR02339 222 HPGMPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAG---------ANVVFCQKGI 292 (519)
T ss_pred CCCCccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcC---------CcEEEECCCc
Confidence 9999999999999999999999999999999999999999999999999999999998764 3599999999
Q ss_pred CHHHHHHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcccceEEEEEECCeeEEEEEccCCCCeeEEEee
Q 012122 236 DPLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIK 315 (470)
Q Consensus 236 ~~~~l~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIii~ 315 (470)
++.+++||.++||++++++++++|+|||++|||+++++++++++..+|+|+.|++.++|+++|++|++++++..+||+||
T Consensus 293 ~~~al~~L~~~gI~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lr 372 (519)
T TIGR02339 293 DDLAQHYLAKAGILAVRRVKKSDIEKLARATGAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNPKAVTILLR 372 (519)
T ss_pred cHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCCEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred CCCHHHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcC
Q 012122 316 GPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAG 395 (470)
Q Consensus 316 g~t~~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG 395 (470)
|||+.+++|.+|+++||++++++++++|++|||||++|++++.+| ++++.++++++++++++|++||+.||++|++|||
T Consensus 373 G~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l-~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG 451 (519)
T TIGR02339 373 GGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRL-RSYARKIGGREQLAIEAFADALEEIPRILAENAG 451 (519)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHH-HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999 8888888899999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcc-CCCeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhc
Q 012122 396 LDTQDVIIALKGEHD-RGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRA 462 (470)
Q Consensus 396 ~d~~~~i~~l~~~~~-~~~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~ 462 (470)
+|+.+++.+|++.|+ ++.++|+|+.+|++.||++.|||||+.+|+++++.|+|+|++|||||++|.+
T Consensus 452 ~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 519 (519)
T TIGR02339 452 LDPIDALVELRAKHEKGNKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIAA 519 (519)
T ss_pred CCHHHHHHHHHHHHHccCCceeEEcCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHHhHhHHhhC
Confidence 999999999999885 4568999999999999999999999999999999999999999999999853
No 3
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.9e-92 Score=746.10 Aligned_cols=449 Identities=39% Similarity=0.614 Sum_probs=429.8
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCC
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 80 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~ 80 (470)
|+++||+++|+++++++|++++||||||+|+|+++|++++.+++++|+||..|++||++|.+.+++.|++++++++ .
T Consensus 64 l~~~hP~a~ll~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~---~ 140 (517)
T cd03343 64 MDIEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVD---P 140 (517)
T ss_pred ccCcCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccC---C
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999885 2
Q ss_pred CcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCC---ccccccceEEEEecCCCcCCcEEEEeEEEecCCCCC
Q 012122 81 PDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPE---EAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHP 157 (470)
Q Consensus 81 ~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~---~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~ 157 (470)
.+.+.+.++|+|+++||+.+.+.+.|++++++|+.++.+.+ ..+|+++|+|++++|+++++|++++|++|++++.++
T Consensus 141 ~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~ 220 (517)
T cd03343 141 DDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHP 220 (517)
T ss_pred CCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCC
Confidence 36789999999999999999999999999999999986532 268889999999999999999999999999999999
Q ss_pred CCccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCCCH
Q 012122 158 DMKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDP 237 (470)
Q Consensus 158 ~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i~~ 237 (470)
+|++.++||||++++++||+++++.++++.+++.+++..+++.|++++++++++|.+.+ +++|+++++|++
T Consensus 221 ~m~~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g---------~~lvi~~~~I~~ 291 (517)
T cd03343 221 GMPKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTG---------ANVVFCQKGIDD 291 (517)
T ss_pred CCccccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcC---------CCEEEeCCCccH
Confidence 99999999999999999999999999999999999999999999999999999998764 258999999999
Q ss_pred HHHHHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcccceEEEEEECCeeEEEEEccCCCCeeEEEeeCC
Q 012122 238 LSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGP 317 (470)
Q Consensus 238 ~~l~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIii~g~ 317 (470)
.+++||.++||++++++++++|+|||++|||++++++++++++.+|+|+.|++.++|+++|++|+++++++.+||+||||
T Consensus 292 ~al~~l~~~gI~~v~~v~~~~l~~Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~ 371 (517)
T cd03343 292 LAQHYLAKAGILAVRRVKKSDMEKLARATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNPKAVTILLRGG 371 (517)
T ss_pred HHHHHHhHCCcEEEEeCCHHHHHHHHHHhCCEEecchhhCChhhCCccceEEEEEECCeEEEEEEcCCCCceEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCC
Q 012122 318 NDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLD 397 (470)
Q Consensus 318 t~~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d 397 (470)
|+.+++|++|+++||++++++++++|++|||||++|++++.+| ++++.+.++++|+++++|++||+.||++|++|||+|
T Consensus 372 t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L-~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d 450 (517)
T cd03343 372 TEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRL-REYARSVGGREQLAVEAFADALEEIPRTLAENAGLD 450 (517)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999 888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc-CCCeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhc
Q 012122 398 TQDVIIALKGEHD-RGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRA 462 (470)
Q Consensus 398 ~~~~i~~l~~~~~-~~~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~ 462 (470)
+.+++.+|++.|+ ++.++|+|+.+|++.||++.|||||+.+|++++++|+|+|++|||||++|.+
T Consensus 451 ~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 516 (517)
T cd03343 451 PIDTLVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIAA 516 (517)
T ss_pred HHHHHHHHHHHHHccCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhhhC
Confidence 9999999999885 4568999999999999999999999999999999999999999999999965
No 4
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.1e-92 Score=744.53 Aligned_cols=451 Identities=27% Similarity=0.473 Sum_probs=426.0
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhh-ccCcccCCC
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEK-FKTPVVMGD 79 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~-~s~~~~~~~ 79 (470)
|+++||+++|++++|++|++++||||||+|+|+++||+++.+|+++|+||+.|++||++|++.++++|++ +++|++
T Consensus 57 i~~~hP~akll~~~a~~q~~~~GDGTTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~--- 133 (527)
T cd03335 57 LEVEHPAAKILVELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVD--- 133 (527)
T ss_pred ccccChHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCC---
Confidence 6799999999999999999999999999999999999999999999999999999999999999999996 888885
Q ss_pred CCcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcC--CCc--cccccceEEEEecCCCcCCcEEEEeEEEecCCC
Q 012122 80 EPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRK--PEE--AIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSR 155 (470)
Q Consensus 80 ~~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~--~~~--~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~ 155 (470)
..+++.|.++|+|+++||+.+.+.+.|++++++|+..+.. .++ .+|+++|+|++++|++.++|++++|++|++++.
T Consensus 134 ~~~~~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~ 213 (527)
T cd03335 134 NLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRA 213 (527)
T ss_pred ccCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccC
Confidence 3478889999999999999988899999999999999852 212 488999999999999999999999999999999
Q ss_pred CCCCccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCC
Q 012122 156 HPDMKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGI 235 (470)
Q Consensus 156 ~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i 235 (470)
++.|++.++||||++++++|++.+++.++++.++++++++.+.+.|++++++++++|.+.+ +++|+++++|
T Consensus 214 ~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g---------~~lvi~~k~I 284 (527)
T cd03335 214 SQGMPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAG---------ANVVLTTGGI 284 (527)
T ss_pred CCCCcccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcC---------CCEEEeCCCC
Confidence 9999999999999999999999999999999999999999999999999999999998765 2589999999
Q ss_pred CHHHHHHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCC------CCCCCcccceEEEEEECCeeEEEEEccCCCCe
Q 012122 236 DPLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDL------TPGCLGWAGLVYEHVLGEEKYTFVENVKNPHS 309 (470)
Q Consensus 236 ~~~~l~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l------~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~ 309 (470)
+|.+++||.++||++++++++++|+|||++|||+++++++++ ++.++|+|+.|++.++|+++|++|+++++++.
T Consensus 285 ~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~~~ 364 (527)
T cd03335 285 DDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSS 364 (527)
T ss_pred cHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCCCE
Confidence 999999999999999999999999999999999999998665 33479999999999999999999999999999
Q ss_pred eEEEeeCCCHHHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHH
Q 012122 310 CTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKT 389 (470)
Q Consensus 310 ~TIii~g~t~~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~ 389 (470)
|||+|||+|+.+++|++|+++||++++++++++|++|||||++|++++.+| +++++..++++++++++||+||+.||++
T Consensus 365 ~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L-~~~~~~~~~~~~~~i~~~a~aL~~ip~~ 443 (527)
T cd03335 365 ASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYL-ENFATTLGSREQLAIAEFAEALLVIPKT 443 (527)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHH-HHHHhccCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 8888888999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHhccC---------CCeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhh
Q 012122 390 LAENAGLDTQDVIIALKGEHDR---------GNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVI 460 (470)
Q Consensus 390 L~~NaG~d~~~~i~~l~~~~~~---------~~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii 460 (470)
|++|||+|+.+++.+|++.|+. ++++|+|+.+|+++||++.|||||+.+|.++|++|+|+|++|||||++|
T Consensus 444 La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii 523 (527)
T cd03335 444 LAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLI 523 (527)
T ss_pred HHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEeEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhccee
Confidence 9999999999999999998843 2478999999999999999999999999999999999999999999999
Q ss_pred hcCc
Q 012122 461 RAGR 464 (470)
Q Consensus 461 ~~~~ 464 (470)
.++|
T Consensus 524 ~~~~ 527 (527)
T cd03335 524 KLNP 527 (527)
T ss_pred ecCC
Confidence 8754
No 5
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.1e-92 Score=744.35 Aligned_cols=450 Identities=28% Similarity=0.439 Sum_probs=426.7
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCC
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 80 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~ 80 (470)
|+++||+++|+++++++|++++||||||+|+|+++||+++.+|+++|+||+.|++||+.|++.++++|+++++|++. +.
T Consensus 72 l~~~hP~akll~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~-~~ 150 (526)
T cd03339 72 MDVDHQIAKLLVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEF-SP 150 (526)
T ss_pred hcccCHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCC-Cc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999998852 12
Q ss_pred CcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCC-CccccccceEEEEecCCCcCCcEEEEeEEEecCCCCCCC
Q 012122 81 PDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKP-EEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDM 159 (470)
Q Consensus 81 ~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~-~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~~ 159 (470)
.+.+.|.++|+|++++|+.+.+.++|++++++|++.+.+. +..+|++.|+|.+++||+++||++++|++|++++.+++|
T Consensus 151 ~~~~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m 230 (526)
T cd03339 151 DNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQM 230 (526)
T ss_pred ccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHcceeeeEEEecccCCCCC
Confidence 3678899999999999999999999999999999999753 246788999999999999999999999999999999999
Q ss_pred ccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCCCHHH
Q 012122 160 KRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLS 239 (470)
Q Consensus 160 ~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i~~~~ 239 (470)
++.++||||++++++||++++++++++.++++++++.+.+.|++++++.+++|.+.+ +++|+++++|+|.+
T Consensus 231 ~~~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g---------~~lvi~~~~I~~~a 301 (526)
T cd03339 231 PKEVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAG---------ANLVICQWGFDDEA 301 (526)
T ss_pred CceecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCC---------CCEEEeCCCCCHHH
Confidence 999999999999999999999999999999999999999999999999999998754 25899999999999
Q ss_pred HHHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcccceEEEEEECC--eeEEEEEccCCCCeeEEEeeCC
Q 012122 240 LDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGE--EKYTFVENVKNPHSCTILIKGP 317 (470)
Q Consensus 240 l~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~TIii~g~ 317 (470)
++||.++||++++++++++|+|||++|||+++++++++++..+|+|+.|++..+|. ++|++|++|++++.+||+|||+
T Consensus 302 l~~L~~~~I~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~ 381 (526)
T cd03339 302 NHLLLQNGLPAVRWVGGVEIELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGG 381 (526)
T ss_pred HHHHHHCCCEEEEeCCHHHHHHHHHHhCCEEecchhhCChhhcccCceEEEEEecCCCcEEEEEECCCCCCEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999985 6889999999999999999999
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCC
Q 012122 318 NDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLD 397 (470)
Q Consensus 318 t~~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d 397 (470)
|+.+++|++|+++||++++++++++|++|||||++|++++.+| ++++...++++++++++||+||+.||++|++|||+|
T Consensus 382 t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l-~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d 460 (526)
T cd03339 382 NKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAV-EKAADKCSGIEQYAMRAFADALESIPLALAENSGLN 460 (526)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHH-HHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999999999999999 888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc-C-CCeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhh
Q 012122 398 TQDVIIALKGEHD-R-GNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIR 461 (470)
Q Consensus 398 ~~~~i~~l~~~~~-~-~~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~ 461 (470)
+.+++.+|+..|+ . ..++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus 461 ~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii~ 526 (526)
T cd03339 461 PIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV 526 (526)
T ss_pred HHHHHHHHHHHHHhcCCCeEeeecCCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhhceecC
Confidence 9999999999984 2 45799999999999999999999999999999999999999999999873
No 6
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.9e-92 Score=742.54 Aligned_cols=451 Identities=29% Similarity=0.455 Sum_probs=427.9
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCC
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 80 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~ 80 (470)
|+++||+++|+++++++|++++||||||+|+|+++||+++.+|+++|+||+.|++||+.|++.++++|++++++++. +.
T Consensus 76 l~~~hP~akll~~~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~-~~ 154 (532)
T TIGR02343 76 MDVDNPIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISD-DN 154 (532)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCc-CC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999998752 12
Q ss_pred CcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCC-CccccccceEEEEecCCCcCCcEEEEeEEEecCCCCCCC
Q 012122 81 PDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKP-EEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDM 159 (470)
Q Consensus 81 ~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~-~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~~ 159 (470)
.+++.|.++++|++++|+.+.+.++|++++++|+..+.+. +..+|+++|++++++|++++||++++|++|++++.+++|
T Consensus 155 ~~~~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m 234 (532)
T TIGR02343 155 NNKEPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQM 234 (532)
T ss_pred CCHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCCC
Confidence 3578899999999999999999999999999999999653 347899999999999999999999999999999999999
Q ss_pred ccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCCCHHH
Q 012122 160 KRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLS 239 (470)
Q Consensus 160 ~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i~~~~ 239 (470)
++.++||||++++++||++++++++++.+++++|+..+.+.|+++++.++++|.+.+ + ++|+++++|+|.+
T Consensus 235 ~~~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g--------~-~lvi~~~~I~~~a 305 (532)
T TIGR02343 235 PKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSG--------A-NIVICQWGFDDEA 305 (532)
T ss_pred CeeecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcC--------C-CEEEeCCCccHHH
Confidence 999999999999999999999999999999999999999999999999999997754 2 5889999999999
Q ss_pred HHHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcccceEEEEEECC--eeEEEEEccCCCCeeEEEeeCC
Q 012122 240 LDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGE--EKYTFVENVKNPHSCTILIKGP 317 (470)
Q Consensus 240 l~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~TIii~g~ 317 (470)
++||.++||++++++++++|+|||++|||++++++++++++++|+|+.|++..+|. ++|+++++|++++.+||+|||+
T Consensus 306 l~~L~~~~i~~v~~~~~~~l~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~~~~TIllrG~ 385 (532)
T TIGR02343 306 NHLLLQNDLPAVRWVGGHELELIAIATGGRIVPRFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGG 385 (532)
T ss_pred HHHHHHCCcEEEEcCCHHHHHHHHHHhCCEEecccccCCHhHCcccceEEEEEecCCcceEEEEECCCCCCEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999987 4899999999999999999999
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCC
Q 012122 318 NDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLD 397 (470)
Q Consensus 318 t~~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d 397 (470)
|+.+++|.+|+++||++++++++++|++||||||+|++++++| ++++.+.++++|+++++|++||+.||++|++|||+|
T Consensus 386 t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l-~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d 464 (532)
T TIGR02343 386 NKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAV-SQEADKYSGVEQYAIRAFADALEEIPMALAENSGLD 464 (532)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHH-HHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999999999999999 888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHhccC--CCeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhc
Q 012122 398 TQDVIIALKGEHDR--GNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRA 462 (470)
Q Consensus 398 ~~~~i~~l~~~~~~--~~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~ 462 (470)
+.+++.+|++.|+. ..++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|..
T Consensus 465 ~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~~ 531 (532)
T TIGR02343 465 PIGTLSDLKSLQMKEKNPHLGVDCLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVISP 531 (532)
T ss_pred HHHHHHHHHHHHHhcCCCccCeeCCCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhccC
Confidence 99999999998852 457999999999999999999999999999999999999999999999965
No 7
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8.5e-92 Score=738.92 Aligned_cols=450 Identities=28% Similarity=0.451 Sum_probs=426.5
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCC
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 80 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~ 80 (470)
|+++||+++|+++++++||+++||||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.++++|++++++++...+
T Consensus 64 l~~~hP~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~ 143 (517)
T cd03336 64 IGVDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEE 143 (517)
T ss_pred ccCcChHHHHHHHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999998842222
Q ss_pred CcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCCcEEEEeEEEecCCCCCCCc
Q 012122 81 PDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMK 160 (470)
Q Consensus 81 ~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~~~ 160 (470)
.+.+.|.++|+|+++||+.+.+.++|++++++|+..+.+ .+|+++|++++++|+++++|++++|+++++++.+ .|+
T Consensus 144 ~~~~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~---~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~-~~~ 219 (517)
T cd03336 144 AFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKG---SGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGV-NQP 219 (517)
T ss_pred hhHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhc---cCCccceeEEEccCCCccceEEEeeEEEecccCC-CCC
Confidence 246789999999999999999999999999999999853 5788899999999999999999999999988754 479
Q ss_pred cccccceeEEeeeccccccccc-ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCCCHHH
Q 012122 161 RRAENCYILTCNVSLEYEKSEV-NAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLS 239 (470)
Q Consensus 161 ~~~~~~kI~l~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i~~~~ 239 (470)
+.++||||++++++|+++++++ ++++.+++++|+..+.+.|++++++++++|+..+ +++++++++|+|.+
T Consensus 220 ~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~g---------v~~v~~~~~I~~~~ 290 (517)
T cd03336 220 KRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHG---------INCFINRQLIYNYP 290 (517)
T ss_pred CeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcC---------CeEEEeCCCccHHH
Confidence 9999999999999999999997 8899999999999999999999999999998764 36899999999999
Q ss_pred HHHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcccceEEEEEECCeeEEEEEccCCCCeeEEEeeCCCH
Q 012122 240 LDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPND 319 (470)
Q Consensus 240 l~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIii~g~t~ 319 (470)
++||.++||++++++++++|+|||++|||+++++++++++.++|+|+.|++..+|+++|++|++|++++.|||+|||+|+
T Consensus 291 ~~~l~~~~I~av~~v~~~~L~rIa~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~ 370 (517)
T cd03336 291 EQLFADAGIMAIEHADFDGVERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQ 370 (517)
T ss_pred HHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecccCCCCcccccccceEEEEEECCeEEEEEEccCCCceEEEEEeCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCCHH
Q 012122 320 HTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQ 399 (470)
Q Consensus 320 ~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d~~ 399 (470)
.+++|.+|+++||++++++++++|++||||||+|++++.+| ++++++.++++|+++++|++||+.||++|++|||+|+.
T Consensus 371 ~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l-~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~ 449 (517)
T cd03336 371 QILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAV-EELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSA 449 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHH-HHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999999999999999999999 88988889999999999999999999999999999999
Q ss_pred HHHHHHHHhccC-CCeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCc
Q 012122 400 DVIIALKGEHDR-GNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGR 464 (470)
Q Consensus 400 ~~i~~l~~~~~~-~~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~ 464 (470)
+++.+|+..|+. +.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|..+|
T Consensus 450 ~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 515 (517)
T cd03336 450 ELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCAP 515 (517)
T ss_pred HHHHHHHHHHHcCCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhcCC
Confidence 999999998854 46799999999999999999999999999999999999999999999999866
No 8
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=6.8e-92 Score=741.54 Aligned_cols=451 Identities=30% Similarity=0.476 Sum_probs=427.5
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCC
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 80 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~ 80 (470)
|+++||+|+|++++|++||+++||||||+|+|+++||+++.+|+++|+||+.|++||+.|++.++++|+++++|++..+.
T Consensus 76 i~~~hP~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~ 155 (533)
T PTZ00212 76 VWLDNPAAKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEE 155 (533)
T ss_pred ccCcCHHHHHHHHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccch
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999998863222
Q ss_pred CcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCCcEEEEeEEEecCCCCCCCc
Q 012122 81 PDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMK 160 (470)
Q Consensus 81 ~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~~~ 160 (470)
.+.+.|.++|+|+++||+.+.+.++|++++++|++.+.+ .+++++|++++++|+++++|++++|+++++++.+ .|+
T Consensus 156 ~~~~~l~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~---~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~-~~~ 231 (533)
T PTZ00212 156 KFKEDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKG---SGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGV-GQP 231 (533)
T ss_pred hhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHhc---cCCccceEEEEecCcCccccEEEEeEEEecccCC-CCC
Confidence 236789999999999999999999999999999999965 4788899999999999999999999999988755 589
Q ss_pred cccccceeEEeeeccccccccc-ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCCCHHH
Q 012122 161 RRAENCYILTCNVSLEYEKSEV-NAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLS 239 (470)
Q Consensus 161 ~~~~~~kI~l~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i~~~~ 239 (470)
++++||||++++++||++++++ ++++.+++++|+..+.+.|++++++++++|+..+ +++++++++|+|.+
T Consensus 232 ~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~g---------v~vvv~~~~I~d~a 302 (533)
T PTZ00212 232 KRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHG---------CNVFINRQLIYNYP 302 (533)
T ss_pred ccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcC---------CeEEEeCCCccHHH
Confidence 9999999999999999999998 7889999999999999999999999999998764 36899999999999
Q ss_pred HHHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcccceEEEEEECCeeEEEEEccCCCCeeEEEeeCCCH
Q 012122 240 LDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPND 319 (470)
Q Consensus 240 l~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIii~g~t~ 319 (470)
++||.++||++++++++++++|||++|||+++++++++++.++|+|+.|++..+|+++|++|++|..++.|||+|||+|+
T Consensus 303 ~~~L~~~~I~avr~v~~~~l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~ 382 (533)
T PTZ00212 303 EQLFAEAGIMAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGAST 382 (533)
T ss_pred HHHHHHCCCEEEecCCHHHHHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEECCeEEEEEEccCCCCEEEEEEECCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCCHH
Q 012122 320 HTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQ 399 (470)
Q Consensus 320 ~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d~~ 399 (470)
.+++|.+|+++|||+++++++++|++||||||+|++++.+| ++++++.++++++++++|++||+.||++|++|||+|+.
T Consensus 383 ~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L-~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~ 461 (533)
T PTZ00212 383 HILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAV-EELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSA 461 (533)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHH-HHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999999999999999999999 88988888999999999999999999999999999999
Q ss_pred HHHHHHHHhccC-CCeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCcC
Q 012122 400 DVIIALKGEHDR-GNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRN 465 (470)
Q Consensus 400 ~~i~~l~~~~~~-~~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~~ 465 (470)
+++.+|+..|+. +.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|...|.
T Consensus 462 ~vl~~l~~~h~~~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~ 528 (533)
T PTZ00212 462 ELVSKLRAEHYKGNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCAPR 528 (533)
T ss_pred HHHHHHHHHHHccCCccceeccCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhcCCc
Confidence 999999999843 467999999999999999999999999999999999999999999999998754
No 9
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.2e-92 Score=743.06 Aligned_cols=451 Identities=27% Similarity=0.480 Sum_probs=428.8
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCC
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 80 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~ 80 (470)
|+++||+++|++++|++|++++||||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.++++|++++++++ .
T Consensus 65 l~~~hP~akll~~~a~~q~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~---~ 141 (525)
T TIGR02344 65 IDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVD---V 141 (525)
T ss_pred ccCCCHHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccC---C
Confidence 6799999999999999999999999999999999999999999999999999999999999999999999999885 3
Q ss_pred CcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCC----cccccc-ceEEEEecCCCcCCcEEEEeEEEecCCC
Q 012122 81 PDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPE----EAIDLF-MVELMHMRHKFDVDTRLVEGLVLDHGSR 155 (470)
Q Consensus 81 ~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~----~~~~~~-~i~i~~i~G~~~~~s~li~G~vl~~~~~ 155 (470)
.+.+.|.++++|+++||+.+.|.+.|++++++|+..+.+.+ ..+|++ +|+|++++||+.+||++++|++|++++.
T Consensus 142 ~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~ 221 (525)
T TIGR02344 142 NDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVT 221 (525)
T ss_pred CCHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccC
Confidence 46778999999999999999999999999999999997532 145665 4899999999999999999999999998
Q ss_pred CCCCccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCC
Q 012122 156 HPDMKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGI 235 (470)
Q Consensus 156 ~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i 235 (470)
++.|++.++||||++++++|++++++.++++.+++++++..+++.|++++++++++|.+.+ |+||+|+|+|
T Consensus 222 ~~~m~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~---------~~vIi~~k~I 292 (525)
T TIGR02344 222 HPKMRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVK---------PDLVITEKGV 292 (525)
T ss_pred CCCCccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcC---------CCEEEeCCCc
Confidence 9999999999999999999999999999999999999999999999999999999997753 5799999999
Q ss_pred CHHHHHHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcc-cceEEEEEECCeeEEEEEccCCCCeeEEEe
Q 012122 236 DPLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGW-AGLVYEHVLGEEKYTFVENVKNPHSCTILI 314 (470)
Q Consensus 236 ~~~~l~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~TIii 314 (470)
++.+++||.++||++++++++++|+|||++|||++++++++++++++|+ |+.|++.++|+++|++|+++++++.|||+|
T Consensus 293 ~dla~~~l~~~~I~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~~~~TIlL 372 (525)
T TIGR02344 293 SDLAQHYLLKANISAIRRVRKTDNNRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILL 372 (525)
T ss_pred cHHHHHHHhHCCceEEecCCHHHHHHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhc
Q 012122 315 KGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENA 394 (470)
Q Consensus 315 ~g~t~~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~Na 394 (470)
||+|+.+++|++|+++||++++++++++|++||||||+|++||.+| ++++.+.++++|+++++|++||+.||++|++||
T Consensus 373 rG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l-~~~~~~~~~~~~~~~~~~a~al~~ip~~La~Na 451 (525)
T TIGR02344 373 RGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYL-AKKASKLEGVQQWPYRAVADALEIIPRTLAQNC 451 (525)
T ss_pred EcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999 888888899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhccC--CCeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCc
Q 012122 395 GLDTQDVIIALKGEHDR--GNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGR 464 (470)
Q Consensus 395 G~d~~~~i~~l~~~~~~--~~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~ 464 (470)
|+|+.+++.+|+..|+. ..++|+|+.+|++.||++.|||||+.+|+++++.|+|+|++|||||++|.+.|
T Consensus 452 G~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 523 (525)
T TIGR02344 452 GVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGVK 523 (525)
T ss_pred CCCHHHHHHHHHHHHHccCCCeEeEECCCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhcCC
Confidence 99999999999998853 36799999999999999999999999999999999999999999999998866
No 10
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=9.6e-92 Score=738.52 Aligned_cols=450 Identities=28% Similarity=0.430 Sum_probs=427.7
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCC
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 80 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~ 80 (470)
|+++||+++|++++|++||+++||||||+|+|+++||+++.+|+++|+||+.|++||+.|++.++++|+++++|++ .
T Consensus 58 i~~~hP~akll~~~a~~qd~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~---~ 134 (517)
T TIGR02342 58 MGVIHPAAKMLVELSKAQDIEAGDGTTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVD---L 134 (517)
T ss_pred ccccChHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccC---c
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999875 3
Q ss_pred CcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCC--CccccccceEEEEecCCCcCCcEEEEeEEEecCCCC-C
Q 012122 81 PDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKP--EEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRH-P 157 (470)
Q Consensus 81 ~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~--~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~-~ 157 (470)
.+.+.|.++|+|++++|+.+.+.++|++++++|+..+.+. ++.+|+++|+|+++.|++.++|++++|++|++++.+ +
T Consensus 135 ~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~ 214 (517)
T TIGR02342 135 SDREILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSA 214 (517)
T ss_pred cCHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhccccCCccCHHHeeEEeccCCChhhcEEEeeEEEeccccccC
Confidence 4678899999999999999999999999999999999753 347899999999999999999999999999999988 4
Q ss_pred CCccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCC--
Q 012122 158 DMKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGI-- 235 (470)
Q Consensus 158 ~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i-- 235 (470)
+||+.++||||++++++|+++++++..++.++++++++.+++.|+++++..+++|.+.+ + +||+++|+|
T Consensus 215 ~mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g--------~-~lvi~~~~I~~ 285 (517)
T TIGR02342 215 GGPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTG--------C-NVLLIQKSILR 285 (517)
T ss_pred CCCccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcC--------C-CEEEECCCccc
Confidence 89999999999999999999999999999999999999999999999999999997754 2 588999998
Q ss_pred ---CHHHHHHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcccceEEEEEECCeeEEEEEccCCC-CeeE
Q 012122 236 ---DPLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNP-HSCT 311 (470)
Q Consensus 236 ---~~~~l~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~-~~~T 311 (470)
++.+++||.++||++++++++++|+|||++|||+++++++++++.++|+|+.|++.++++++|+++.+++++ +.+|
T Consensus 286 ~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~t 365 (517)
T TIGR02342 286 DAVNDLALHFLAKMKIMVVKDIEREEVEFICKTIGCKPIASIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVT 365 (517)
T ss_pred ccccHHHHHHHhhCCceEEecCCHHHHHHHHHHHCCEEEcchhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999874 8999
Q ss_pred EEeeCCCHHHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHH
Q 012122 312 ILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLA 391 (470)
Q Consensus 312 Iii~g~t~~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~ 391 (470)
|+|||||+.+++|.+|+++||++++++++++|++||||||+|++++.+| ++++++.++++|+++++||+||+.||++|+
T Consensus 366 IllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l-~~~~~~~~~~~~~~i~~~a~al~~ip~~La 444 (517)
T TIGR02342 366 VLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKL-SKLARTMKGVESYCVRAFADALEVIPYTLA 444 (517)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHH-HHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 888888889999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHhccC-CCeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcC
Q 012122 392 ENAGLDTQDVIIALKGEHDR-GNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAG 463 (470)
Q Consensus 392 ~NaG~d~~~~i~~l~~~~~~-~~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~ 463 (470)
+|||+|+.+++.+|+..|+. +.++|+|+.+|+++||++.|||||+.+|++++++|+|+|++|||||++|.++
T Consensus 445 ~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~~ 517 (517)
T TIGR02342 445 ENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITDMLEEEVLQPLLVTTSAVTLASETVRMILKIDDIVFTR 517 (517)
T ss_pred HHcCCCHHHHHHHHHHHHHcCCCccceecCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHhcccceeecC
Confidence 99999999999999998854 4679999999999999999999999999999999999999999999998763
No 11
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.8e-91 Score=736.96 Aligned_cols=451 Identities=28% Similarity=0.477 Sum_probs=427.6
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCC-
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGD- 79 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~- 79 (470)
|+++||+++|+++++++|++++||||||+|+|+++||+++.+|+++|+||+.|++||+.|++.++++|++++++++..+
T Consensus 65 l~~~hP~akll~~~a~~q~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~ 144 (522)
T cd03340 65 LDIVHPAAKTLVDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDK 144 (522)
T ss_pred ccccCHHHHHHHHHHHHhHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccc
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999886311
Q ss_pred CCcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCCcEEEEeEEEecCCCCCC-
Q 012122 80 EPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPD- 158 (470)
Q Consensus 80 ~~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~- 158 (470)
..+++.|.++|+|+++||+.+.+.++|++++++|+..+.+ .+|+++|++++++|++.+||++++|++|++++.+|+
T Consensus 145 ~~~~~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~---~~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~ 221 (522)
T cd03340 145 EEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDD---DLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGF 221 (522)
T ss_pred cccHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHhcc---cCChhHheEeeecCCChhhceeeeeEEEecccCcccc
Confidence 1246789999999999999999999999999999999954 468889999999999999999999999999998775
Q ss_pred --CccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCCC
Q 012122 159 --MKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGID 236 (470)
Q Consensus 159 --~~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i~ 236 (470)
||+.++||||++++++||+.+++.+.++.++++++++.+.+.|++++++++++|.+.+ +++|+++++|+
T Consensus 222 ~~~~~~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g---------~~vvl~~~~i~ 292 (522)
T cd03340 222 EQQPKKFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSG---------ANVVLSKLPIG 292 (522)
T ss_pred ccCCccccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcC---------CCEEEeCCCCc
Confidence 5899999999999999999999999999999999999999999999999999998765 36999999999
Q ss_pred HHHHHHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcccceEEEEEECCeeEEEEEccCCCCeeEEEeeC
Q 012122 237 PLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKG 316 (470)
Q Consensus 237 ~~~l~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIii~g 316 (470)
|.+++||.++||++++++++++|+|||++|||+++++++++++..+|+|+.|++.++|+++|++|++|++++.+||+|||
T Consensus 293 d~a~~~l~~~~I~~~~~v~~~~l~rIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG 372 (522)
T cd03340 293 DLATQYFADRDIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKAKTCTIILRG 372 (522)
T ss_pred HHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEEeeccccCCccccccceEEEEEEECCEEEEEEECCCCCceEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCC
Q 012122 317 PNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGL 396 (470)
Q Consensus 317 ~t~~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~ 396 (470)
+++.+++|.+|+++||++++++++++|++|||||++|++++.+| ++++++.++++++++++||+||+.||++|++|||+
T Consensus 373 ~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l-~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~ 451 (522)
T cd03340 373 GAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL-RDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGF 451 (522)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHH-HHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999 88888888999999999999999999999999999
Q ss_pred CHHHHHHHHHHhccCC--CeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCc
Q 012122 397 DTQDVIIALKGEHDRG--NIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGR 464 (470)
Q Consensus 397 d~~~~i~~l~~~~~~~--~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~ 464 (470)
|+.+++.+|++.|+.+ .++|+|+.+|++.||++.|||||+.+|+++++.|+|+|++|||||++|.+++
T Consensus 452 d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~~~ 521 (522)
T cd03340 452 DATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKNPK 521 (522)
T ss_pred CHHHHHHHHHHHHHccCCCeeeeeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeCCC
Confidence 9999999999998543 5799999999999999999999999999999999999999999999998753
No 12
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.5e-91 Score=731.78 Aligned_cols=452 Identities=29% Similarity=0.457 Sum_probs=426.4
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCC
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 80 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~ 80 (470)
|+++||+++|++++|++||+++||||||+|+|+++||++|.+|+++|+||+.|++||+.|++.++++|++++++++...+
T Consensus 65 l~i~hP~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~ 144 (519)
T TIGR02341 65 IGVDNPAAKVLVDMSKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKT 144 (519)
T ss_pred ccCcChHHHHHHHHHHHhHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999998852222
Q ss_pred CcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCCcEEEEeEEEecCCCCCCCc
Q 012122 81 PDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMK 160 (470)
Q Consensus 81 ~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~~~ 160 (470)
.+.+.|.++++|++++|+.+.+.++|++++++|+..+.+ ..|+++|++++++|+++++|++++|+++++++.+ .|+
T Consensus 145 ~~~~~L~~ia~t~l~ski~~~~~~~~s~l~~~av~~i~~---~~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~-~~~ 220 (519)
T TIGR02341 145 KFRDDLLNIARTTLSSKILSQHKDHFAQLAVDAVLRLKG---SGNLDAIQIIKKLGGSLNDSYLDEGFLLEKKIGV-NQP 220 (519)
T ss_pred ccHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhcc---CCChhheEEEEccCCCcccceEEeeEEEeccCCC-CCc
Confidence 246789999999999999999999999999999999854 2477889999999999999999999999988654 578
Q ss_pred cccccceeEEeeeccccccccc-ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCCCHHH
Q 012122 161 RRAENCYILTCNVSLEYEKSEV-NAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLS 239 (470)
Q Consensus 161 ~~~~~~kI~l~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i~~~~ 239 (470)
+.++||||++++++|++.++++ ++++.+++++++..+.+.|+++++++++.|+..+ +++++++++|+|.+
T Consensus 221 ~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g---------~~~v~~~~~I~~~~ 291 (519)
T TIGR02341 221 KRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHN---------INCFINRQLIYNYP 291 (519)
T ss_pred eeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcC---------CcEEEECCcCCHHH
Confidence 9999999999999999999997 8889999999999999999999999999998754 36899999999999
Q ss_pred HHHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcccceEEEEEECCeeEEEEEccCCCCeeEEEeeCCCH
Q 012122 240 LDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPND 319 (470)
Q Consensus 240 l~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIii~g~t~ 319 (470)
++||.++||++++++++.+|+|||++|||+++++++++++.++|+|+.|++..+|+++|++|++|++++.+||+|||+|+
T Consensus 292 ~~~l~~~~I~~v~~~~~~~l~~ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~ 371 (519)
T TIGR02341 292 EQLFADAGVMAIEHADFEGIERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLGEACTIVLRGATQ 371 (519)
T ss_pred HHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecccccCCccccccCceEEEEEECCEEEEEEEcCCCCCEEEEEEeCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCCHH
Q 012122 320 HTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQ 399 (470)
Q Consensus 320 ~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d~~ 399 (470)
.+++|.+|+++||+++++++++++++||||||+|++++.+| ++++++.++++++++++|++||+.||++|++|||+|+.
T Consensus 372 ~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l-~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~ 450 (519)
T TIGR02341 372 QILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAV-AVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSA 450 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHH-HHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Confidence 99999999999999999999999999999999999999999 88888888999999999999999999999999999999
Q ss_pred HHHHHHHHhccC-CCeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCcCC
Q 012122 400 DVIIALKGEHDR-GNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNM 466 (470)
Q Consensus 400 ~~i~~l~~~~~~-~~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~~~ 466 (470)
+++.+|+..|+. ..++|+|+.+|++.||++.|||||+.+|+++++.|+|+|++|||||++|.++|.+
T Consensus 451 ~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~ 518 (519)
T TIGR02341 451 ELVAQLRAAHYNGNHTMGLDMEEGEIADMRKLGIIESYKVKRAVVSSAAEAAEVILRVDNIIKAAPRA 518 (519)
T ss_pred HHHHHHHHHHHcCCCccceecCCCcccchhhccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCC
Confidence 999999998854 4579999999999999999999999999999999999999999999999998844
No 13
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.2e-90 Score=733.13 Aligned_cols=455 Identities=27% Similarity=0.473 Sum_probs=427.0
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhc-cCcccCCC
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKF-KTPVVMGD 79 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~-s~~~~~~~ 79 (470)
|+++||+++|+++++++|++++||||||+|||+++||+++.+|+++|+||+.|++||+.|++.++++|++. ++|++
T Consensus 61 i~~~hP~akll~~~a~~qd~~~GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~--- 137 (536)
T TIGR02340 61 LEVEHPAAKILVELAQLQDREVGDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVD--- 137 (536)
T ss_pred hcccChHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCC---
Confidence 67899999999999999999999999999999999999999999999999999999999999999999974 88875
Q ss_pred CCcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcC--CC--ccccccceEEEEecCCCcCCcEEEEeEEEecCCC
Q 012122 80 EPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRK--PE--EAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSR 155 (470)
Q Consensus 80 ~~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~--~~--~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~ 155 (470)
..+.+.|.++|+|+++||+.+.+.+.|++++++|+..+.. .+ ..+|+++|++++++|++.++|++++|++|++++.
T Consensus 138 ~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~ 217 (536)
T TIGR02340 138 ELGREALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRA 217 (536)
T ss_pred cccHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCccccEEEEEEEEecccC
Confidence 3467889999999999999999999999999999999852 11 2578999999999999999999999999999999
Q ss_pred CCCCccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCC
Q 012122 156 HPDMKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGI 235 (470)
Q Consensus 156 ~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i 235 (470)
++.|++.++||||++++++|++.+++.++++.++++.+++.+.+.|++++++.+++|.+++ +++|+++++|
T Consensus 218 ~~~m~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g---------~~lvi~~k~I 288 (536)
T TIGR02340 218 SQQMPKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAG---------ANVVLTTGGI 288 (536)
T ss_pred CCCCcceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcC---------CCEEEeCCCC
Confidence 9999999999999999999999999999999999999999999999999999999998765 2588899999
Q ss_pred CHHHHHHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCC------CCCCCcccceEEEEEECCeeEEEEEccCCCCe
Q 012122 236 DPLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDL------TPGCLGWAGLVYEHVLGEEKYTFVENVKNPHS 309 (470)
Q Consensus 236 ~~~~l~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l------~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~ 309 (470)
+|.+++||.++||++++++++++|+|||++|||++++++.++ ++.++|+|+.|++.++|+++|++|+++++++.
T Consensus 289 ~~~a~~~L~k~~I~~i~rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~ 368 (536)
T TIGR02340 289 DDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGRKS 368 (536)
T ss_pred cHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCCCE
Confidence 999999999999999999999999999999999999988654 44569999999999999999999999998999
Q ss_pred eEEEeeCCCHHHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHH
Q 012122 310 CTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKT 389 (470)
Q Consensus 310 ~TIii~g~t~~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~ 389 (470)
+||+|||+|+.+++|++|+++||++++++++++|++|||||++|++++.+| +++++..++++++++++|++||+.||++
T Consensus 369 ~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l-~~~~~~~~~~~~~~~~~fa~AL~~ip~~ 447 (536)
T TIGR02340 369 ASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYL-ENFATTLGSREQLAIAEFAEALLIIPKV 447 (536)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHH-HHHhhhCCChhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 8888888899999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHhccC---------CCeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhh
Q 012122 390 LAENAGLDTQDVIIALKGEHDR---------GNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVI 460 (470)
Q Consensus 390 L~~NaG~d~~~~i~~l~~~~~~---------~~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii 460 (470)
|++|||+|+.+++.+|++.|+. ..++|+|+.+|++.||++.|||||+.+|+++|++|+|+|++|||||++|
T Consensus 448 La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii 527 (536)
T TIGR02340 448 LAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLI 527 (536)
T ss_pred HHHHCCCCHHHHHHHHHHHHHccCcccccccCceEeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999988843 2368999999999999999999999999999999999999999999999
Q ss_pred hcCcCCCC
Q 012122 461 RAGRNMRK 468 (470)
Q Consensus 461 ~~~~~~~~ 468 (470)
.+.|...|
T Consensus 528 ~~~~~~~~ 535 (536)
T TIGR02340 528 KLNPEQSK 535 (536)
T ss_pred hcCCCCCC
Confidence 99875443
No 14
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.2e-90 Score=728.98 Aligned_cols=452 Identities=28% Similarity=0.457 Sum_probs=428.8
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCC
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 80 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~ 80 (470)
|+++||+++|+++++++|++++||||||+|+|+++||+++.+|+++|+||+.|++||++|.+.++++|+++++|++..+.
T Consensus 66 i~~~hP~a~ll~~~a~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~ 145 (522)
T TIGR02345 66 LDIVHPAAKTLVDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKG 145 (522)
T ss_pred hcccChHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999998863223
Q ss_pred CcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCCcEEEEeEEEecCCCCCC--
Q 012122 81 PDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPD-- 158 (470)
Q Consensus 81 ~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~-- 158 (470)
.+.+.|.++|+|+++||+.+.+.++|++++++|+..+.+ +.+|+++|++++++|++.+||++++|++|++++.+|+
T Consensus 146 ~~~~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~--~~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~ 223 (522)
T TIGR02345 146 EQREVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDI--DDLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFE 223 (522)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhh--ccCChhHheEEeecCCCHHhcceecceEEecccCccccc
Confidence 356789999999999999999999999999999999965 2688999999999999999999999999999998875
Q ss_pred -CccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCCCH
Q 012122 159 -MKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDP 237 (470)
Q Consensus 159 -~~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i~~ 237 (470)
|++.++||||++++++|++.+++.+..+..++++++..+.+.|++++++++++|++.+ +++|+++++|+|
T Consensus 224 ~~~~~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g---------~~vv~~~~~i~d 294 (522)
T TIGR02345 224 QQPKKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESG---------ANVVLSKLPIGD 294 (522)
T ss_pred cCCceeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcC---------CcEEEeCCCccH
Confidence 4899999999999999999999999999999999999999999999999999998765 369999999999
Q ss_pred HHHHHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcccceEEEEEECCeeEEEEEccCCCCeeEEEeeCC
Q 012122 238 LSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGP 317 (470)
Q Consensus 238 ~~l~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIii~g~ 317 (470)
.+++||.++||+++++++++++++++++|||+++++++++++..+|+|+.+++.++++++|++|+++++++.|||+|||+
T Consensus 295 ~~~~~L~~~~I~~~~~v~~~dl~ria~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~~~~TI~lrG~ 374 (522)
T TIGR02345 295 LATQYFADHNIFCAGRVSDEDLKRVVKACGGSIQSTTSDLEADVLGTCALFEERQIGSERYNYFTGCPHAKTCTIILRGG 374 (522)
T ss_pred HHHHHHHHCCcEEEecCCHHHHHHHHHHhCCeEEcchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCceEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCC
Q 012122 318 NDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLD 397 (470)
Q Consensus 318 t~~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d 397 (470)
|+.+++|.+|+++||+++++++++++++|||||++|++++.+| ++++.+.++++++++++|++||+.||++|++|||+|
T Consensus 375 t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l-~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d 453 (522)
T TIGR02345 375 AEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKIL-REHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFD 453 (522)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHH-HHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999999999999999 888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHhccC-CCeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCc
Q 012122 398 TQDVIIALKGEHDR-GNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGR 464 (470)
Q Consensus 398 ~~~~i~~l~~~~~~-~~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~ 464 (470)
+.+++.+|++.|+. +.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|.+++
T Consensus 454 ~~~vl~~l~~~h~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 521 (522)
T TIGR02345 454 SIEILNKLRSRHAKGGKWYGVDINTEDIGDNFENFVWEPLLVKKNALKAAFEAACTILSIDETIMNPK 521 (522)
T ss_pred HHHHHHHHHHHHHcCCCccceeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHhCCC
Confidence 99999999998854 45799999999999999999999999999999999999999999999998743
No 15
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8.4e-90 Score=725.17 Aligned_cols=449 Identities=29% Similarity=0.436 Sum_probs=426.6
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCC
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 80 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~ 80 (470)
|+++||+++|+++++++|++++||||||+|+|+++|++++.+++++|+||+.|++||+.|.+.++++|++++++++ .
T Consensus 57 l~~~hp~a~ll~~~a~~q~~~~GDGTtt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~---~ 133 (515)
T cd03338 57 MSVLHPAAKMLVELSKAQDIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVD---L 133 (515)
T ss_pred CcCcCHHHHHHHHHHHHHHhHhcCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCC---C
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999885 3
Q ss_pred CcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCC--ccccccceEEEEecCCCcCCcEEEEeEEEecCCCCCC
Q 012122 81 PDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPE--EAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPD 158 (470)
Q Consensus 81 ~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~--~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~ 158 (470)
.+.+.|.++|+|+++||+.+.+.+.|++++++|+.++.+.+ +.+|+++|+++++.|++.++|++++|++|++++.++.
T Consensus 134 ~~~~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~ 213 (515)
T cd03338 134 NDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKA 213 (515)
T ss_pred CCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcC
Confidence 36778999999999999999999999999999999997643 4689999999999999999999999999999999986
Q ss_pred -CccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCC--
Q 012122 159 -MKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGI-- 235 (470)
Q Consensus 159 -~~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i-- 235 (470)
||+.++|||+++++|||++++++++..+.++++++++.+++.|+++++..+++|.+.+ +++|+++++|
T Consensus 214 ~~p~~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g---------~~lvi~~~~i~~ 284 (515)
T cd03338 214 GGPTRIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSG---------CNVLLIQKSILR 284 (515)
T ss_pred CCCccccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcC---------CCEEEECCCccc
Confidence 4999999999999999999999999999999999999999999999999999998754 2588899987
Q ss_pred ---CHHHHHHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcccceEEEEEECCeeEEEEEccCC-CCeeE
Q 012122 236 ---DPLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKN-PHSCT 311 (470)
Q Consensus 236 ---~~~~l~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~-~~~~T 311 (470)
++.+++||.++||++++++++++|+|||++|||+++++++++++..+|+|+.|++.++|+++|++|+++++ ++.||
T Consensus 285 ~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~T 364 (515)
T cd03338 285 DAVSDLALHFLAKLKIMVVKDIEREEIEFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVT 364 (515)
T ss_pred ccccHHHHHHHHHCCceEEecCCHHHHHHHHHHHCCEEecccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 69999
Q ss_pred EEeeCCCHHHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHH
Q 012122 312 ILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLA 391 (470)
Q Consensus 312 Iii~g~t~~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~ 391 (470)
|+|||+|+.+++|++|+++||++++++++++|++|||||++|++++.+| ++++.+.++++|+++++|++||+.||++|+
T Consensus 365 IllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l-~~~~~~~~~~~~~~~~~~a~al~~ip~~L~ 443 (515)
T cd03338 365 ILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQL-SEWARTLTGVEQYCVRAFADALEVIPYTLA 443 (515)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHH-HHHhccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 888888889999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHhccC-CCeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhc
Q 012122 392 ENAGLDTQDVIIALKGEHDR-GNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRA 462 (470)
Q Consensus 392 ~NaG~d~~~~i~~l~~~~~~-~~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~ 462 (470)
+|||+|+.+++.+|+..|+. +.++|+|+.+|++.||++.|||||+.+|+++++.|+|+|++|||||++|.+
T Consensus 444 ~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii~~ 515 (515)
T cd03338 444 ENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMILKIDDIVLA 515 (515)
T ss_pred HHCCCCHHHHHHHHHHHHHccCCccceeccCCCccchhhcCceecHHHHHHHHHHHHHHHHHHhccchhhcC
Confidence 99999999999999998853 568999999999999999999999999999999999999999999999864
No 16
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.4e-89 Score=710.60 Aligned_cols=422 Identities=71% Similarity=1.105 Sum_probs=399.8
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCC
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 80 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~ 80 (470)
|+++||+++|+.++|++||+++||||||+++|+++|++++.+++++|+||+.|++||++|.+.+++.|++++.+++.+
T Consensus 61 i~~~hP~a~l~~~~a~~qd~~~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~-- 138 (484)
T cd03342 61 MQIQHPTASMIARAATAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEID-- 138 (484)
T ss_pred ccCcCHHHHHHHHHHHHhhhHhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCC--
Confidence 679999999999999999999999999999999999999999999999999999999999999999999999888521
Q ss_pred CcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCCcEEEEeEEEecCCCCCCCc
Q 012122 81 PDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMK 160 (470)
Q Consensus 81 ~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~~~ 160 (470)
.+.+.+.++|++++++|+.+.+.+.|++++++|+..+.+.++.+|+++|++++++||+.++|++++|++|++++.+|+|+
T Consensus 139 ~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~ 218 (484)
T cd03342 139 TDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMP 218 (484)
T ss_pred CCHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCCC
Confidence 37789999999999999999999999999999999997654479999999999999999999999999999999999999
Q ss_pred cccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCCCHHHH
Q 012122 161 RRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSL 240 (470)
Q Consensus 161 ~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i~~~~l 240 (470)
++++||||+++++||++++++++.++.+ .+|+++++|+|.++
T Consensus 219 ~~~~n~~Ill~~~~le~~~~~~~~~~~~--------------------------------------~lvi~~~~I~~~al 260 (484)
T cd03342 219 KRVENAYILTCNVSLEYEKTEVNSGFFY--------------------------------------SVVINQKGIDPPSL 260 (484)
T ss_pred ccccCceEEEEeCCCCCCccccCcEEEE--------------------------------------EEEEeCCCccHHHH
Confidence 9999999999999999988776544321 27788999999999
Q ss_pred HHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcccceEEEEEECCeeEEEEEccCCCCeeEEEeeCCCHH
Q 012122 241 DLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDH 320 (470)
Q Consensus 241 ~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIii~g~t~~ 320 (470)
+||.++||++++++++++|+|||++|||++++++++++++++|+|+.|++..+|+++|++|+++++++.+||+|||+|+.
T Consensus 261 ~~l~~~~I~av~~~~~~~l~~ia~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~tI~lrg~t~~ 340 (484)
T cd03342 261 DMLAKEGILALRRAKRRNMERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNPKSCTILIKGPNDH 340 (484)
T ss_pred HHHHHCCCeEEEeCCHHHHHHHHHHhCCEEecccccCChhhCcccceEEEEEECCeEEEEEECCCCCcEEEEEEeCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCCHHH
Q 012122 321 TIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQD 400 (470)
Q Consensus 321 ~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d~~~ 400 (470)
+++|.+|+++||++++++++++|++||||||+|++++.+| ++++.+.++++|+++++|++||+.||++|++|||+|+.+
T Consensus 341 ~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L-~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~ 419 (484)
T cd03342 341 TITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHL-KEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQE 419 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHH-HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 9999999999999999999999999999999999999999 889888899999999999999999999999999999999
Q ss_pred HHHHHHHhccC-CCeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcC
Q 012122 401 VIIALKGEHDR-GNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAG 463 (470)
Q Consensus 401 ~i~~l~~~~~~-~~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~ 463 (470)
++.+|++.|+. +.++|+|+.+|++.||++.|||||+.+|+++|++|+|+|++|||||++|.++
T Consensus 420 ~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~~ 483 (484)
T cd03342 420 TLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRAG 483 (484)
T ss_pred HHHHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence 99999988843 4679999999999999999999999999999999999999999999999774
No 17
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2e-88 Score=714.17 Aligned_cols=450 Identities=23% Similarity=0.419 Sum_probs=423.1
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccC-cccCCC
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKT-PVVMGD 79 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~-~~~~~~ 79 (470)
|+++||+++|++++|++||+++||||||+|||+++||+++.+++++|+||+.|++||+.|++.+++.|+++++ ++. +
T Consensus 67 i~~~hP~akll~e~a~sqd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~--~ 144 (531)
T TIGR02346 67 LEVQHPAAKLLVMASEMQENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVE--D 144 (531)
T ss_pred ccccCHHHHHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCC--C
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999986 664 1
Q ss_pred CCcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCC-ccccccceEEEEecCCCcCCcEEEEeEEEecCCCCCC
Q 012122 80 EPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPE-EAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPD 158 (470)
Q Consensus 80 ~~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~-~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~ 158 (470)
..+.+.|.++++|+++||+.+. .++|++++++|+.++.+.+ +.+|+++|+|+++.|++.++|++++|++|++++. .
T Consensus 145 ~~~~~~l~~i~~tsl~sK~~~~-~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~--~ 221 (531)
T TIGR02346 145 VRNKKELIKALKASISSKQYGN-EDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAE--G 221 (531)
T ss_pred CCCHHHHHHHHHHHhccccCch-HHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhceeEeeeEEeccCC--C
Confidence 2357889999999999999887 9999999999999987532 3689999999999999999999999999999843 5
Q ss_pred CccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCCCHH
Q 012122 159 MKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPL 238 (470)
Q Consensus 159 ~~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i~~~ 238 (470)
|++.++||||+++++|+++++++.++++.++++.++.++.+.|+++++.++++|.+.+ + +||+++++|+|.
T Consensus 222 ~~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g--------~-~lvi~~~~I~d~ 292 (531)
T TIGR02346 222 SVKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSG--------V-NVIVTGGSVGDM 292 (531)
T ss_pred CceeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcC--------C-cEEEECCCcCHH
Confidence 7899999999999999999999999999999999999999999999999999997754 2 588999999999
Q ss_pred HHHHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcccceEEEEEECCeeEEEEEccC-CCCeeEEEeeCC
Q 012122 239 SLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVK-NPHSCTILIKGP 317 (470)
Q Consensus 239 ~l~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~-~~~~~TIii~g~ 317 (470)
+++||.++||+++++++..+|+|||.+|||+++++++++++.++|+|+.|++..+|+++|.+|+++. +++.+||+||||
T Consensus 293 ~~~~l~~~~I~av~~~~~~~l~~Ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~ 372 (531)
T TIGR02346 293 ALHYCEKYNIMVLKIPSKFELRRLCKTVGATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGS 372 (531)
T ss_pred HHHHHHHCCcEEEecCCHHHHHHHHHHHCCEEecccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999999999999887 588999999999
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCC
Q 012122 318 NDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLD 397 (470)
Q Consensus 318 t~~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d 397 (470)
|+.+++|++|+++||++++++++++|++||||||+|+++|.+| ++++++.++++++++++|++||+.||++|++|||+|
T Consensus 373 t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L-~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d 451 (531)
T TIGR02346 373 TKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRL-KKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLN 451 (531)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHH-HHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999 888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHhccC-CCeeeEEccCCC--ccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCcC
Q 012122 398 TQDVIIALKGEHDR-GNIVGLNQHSGD--PIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRN 465 (470)
Q Consensus 398 ~~~~i~~l~~~~~~-~~~~gid~~~~~--~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~~ 465 (470)
+.+++.+|+..|+. +.++|+|+.+|+ +.||++.|||||+.+|+++|++|+|+|++|||||++|...|.
T Consensus 452 ~~~~~~~l~~~h~~~~~~~Gid~~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~ 522 (531)
T TIGR02346 452 PNEVIPKLYAAHKKGNTSSGIDIEAESDGVKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMAKPA 522 (531)
T ss_pred HHHHHHHHHHHHHccCCccceeeeCCCccccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhccCCC
Confidence 99999999998853 457899999999 599999999999999999999999999999999999998864
No 18
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-90 Score=656.73 Aligned_cols=452 Identities=27% Similarity=0.449 Sum_probs=430.7
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCC-
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGD- 79 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~- 79 (470)
|++-||+|+.|++.+++||.++||||||||+|++++|+++-.+++.|+||..|+++|+.|...+++.++++++.++..+
T Consensus 69 ldivhPaaktlVdia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~ 148 (543)
T KOG0361|consen 69 LDIVHPAAKTLVDIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSK 148 (543)
T ss_pred HhhcChhHHHHHHHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccch
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999998886321
Q ss_pred CCcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCCcEEEEeEEEecCCCCCC-
Q 012122 80 EPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPD- 158 (470)
Q Consensus 80 ~~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~- 158 (470)
..-++.|.+.|.|+++||+..+..++|+++++||+..+.. ..|.++|-|.|++||++.||.+++|+-|++.|++..
T Consensus 149 ~~~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~---~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGf 225 (543)
T KOG0361|consen 149 TELRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDN---DLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGF 225 (543)
T ss_pred hhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcc---ccchhhcceeecCCCccchhhhccceeeeehccccch
Confidence 2236789999999999999999999999999999998853 467889999999999999999999999999998763
Q ss_pred --CccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCCC
Q 012122 159 --MKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGID 236 (470)
Q Consensus 159 --~~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i~ 236 (470)
.|+++.||||+++|..||.+..+-++++...+++++..++++||+.+.+++++|...+ . +||++.-.|.
T Consensus 226 EqqPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sG--------A-nVVLSkLpIG 296 (543)
T KOG0361|consen 226 EQQPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESG--------A-NVVLSKLPIG 296 (543)
T ss_pred hhCccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcC--------C-eEEEecccch
Confidence 5899999999999999999999999999999999999999999999999999998754 2 6999999999
Q ss_pred HHHHHHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcccceEEEEEECCeeEEEEEccCCCCeeEEEeeC
Q 012122 237 PLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKG 316 (470)
Q Consensus 237 ~~~l~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIii~g 316 (470)
|.|.+||++++|+|-.||+.+||.|+..++|+.++++..++.+..+|.|..+++.++|+++|-+|++|+..+.||+++||
T Consensus 297 D~ATQyFAdrdiFCAGRV~~eDl~Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliLRG 376 (543)
T KOG0361|consen 297 DLATQYFADRDIFCAGRVPEEDLNRVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLILRG 376 (543)
T ss_pred HHHHHHhhccCceecCcCCHHHHHHHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCCccceeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCC
Q 012122 317 PNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGL 396 (470)
Q Consensus 317 ~t~~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~ 396 (470)
+.++.++|.+|++|||++++|.++++..||+|||++||+++++| ++++..+.+++|+.+.+|++|||.||++||.|+|+
T Consensus 377 gaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMElSk~l-Rd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGf 455 (543)
T KOG0361|consen 377 GAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMELSKYL-RDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGF 455 (543)
T ss_pred cHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehHHHHH-HHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCC
Confidence 99999999999999999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhcc-CCCeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCcC
Q 012122 397 DTQDVIIALKGEHD-RGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRN 465 (470)
Q Consensus 397 d~~~~i~~l~~~~~-~~~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~~ 465 (470)
|..+++.+||..|. ++.|+|+|++++.+.|+++.+||||..||.++++.|+|+|++||.+|+.|.+.+.
T Consensus 456 Da~~ilnkLR~rHA~G~~w~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~~S 525 (543)
T KOG0361|consen 456 DATNILNKLRQRHAQGEKWYGVDINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKNPKS 525 (543)
T ss_pred cHHHHHHHHHHHhhcCCceeeeeecccchhhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCCcc
Confidence 99999999999994 5689999999999999999999999999999999999999999999999998874
No 19
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.8e-86 Score=688.24 Aligned_cols=407 Identities=31% Similarity=0.552 Sum_probs=384.7
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCC
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 80 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~ 80 (470)
|+++||+++|+++++++|++++||||||+|+|+++||+++.+|+++|+||+.|++||++|++.++++|++++++++ .
T Consensus 65 l~~~hP~a~ll~~~a~~q~~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~---~ 141 (480)
T cd03337 65 IDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVD---V 141 (480)
T ss_pred ccccChHHHHHHHHHHhHHHHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccc---c
Confidence 6799999999999999999999999999999999999999999999999999999999999999999999999885 3
Q ss_pred CcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCC--c--ccccc-ceEEEEecCCCcCCcEEEEeEEEecCCC
Q 012122 81 PDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPE--E--AIDLF-MVELMHMRHKFDVDTRLVEGLVLDHGSR 155 (470)
Q Consensus 81 ~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~--~--~~~~~-~i~i~~i~G~~~~~s~li~G~vl~~~~~ 155 (470)
.+.+.|.++++|+++||+.+.+.+.|++++++|+..+.+.. . .+|++ +|+|++++|++.+||++++|++|++++.
T Consensus 142 ~~~~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~ 221 (480)
T cd03337 142 NDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVT 221 (480)
T ss_pred CCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCC
Confidence 47888999999999999999999999999999999997542 1 36665 5999999999999999999999999999
Q ss_pred CCCCccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCC
Q 012122 156 HPDMKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGI 235 (470)
Q Consensus 156 ~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i 235 (470)
++.|+++++||||+++++||++ ||+++++|
T Consensus 222 ~~~m~~~~~n~kIlll~~~Le~--------------------------------------------------lvi~~k~I 251 (480)
T cd03337 222 HPKMRRRIENPRIVLLDCPLEY--------------------------------------------------LVITEKGV 251 (480)
T ss_pred CCCCCcEecCCCEEEEecCcce--------------------------------------------------EEEeCCCc
Confidence 9999999999999999999853 46789999
Q ss_pred CHHHHHHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcc-cceEEEEEECCeeEEEEEccCCCCeeEEEe
Q 012122 236 DPLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGW-AGLVYEHVLGEEKYTFVENVKNPHSCTILI 314 (470)
Q Consensus 236 ~~~~l~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~TIii 314 (470)
+|.+++||.++||++++++++++|+|||++|||++++++++++++.+|+ |+.+++.++++++|++|++|++++.+||+|
T Consensus 252 ~d~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~~~~TIll 331 (480)
T cd03337 252 SDLAQHYLVKAGITALRRVRKTDNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDPKACTILL 331 (480)
T ss_pred cHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999999 677777888999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhc
Q 012122 315 KGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENA 394 (470)
Q Consensus 315 ~g~t~~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~Na 394 (470)
||||+.+++|.+|+++||++++++++++|++|||||++|++++.+| ++++.+.++++|+++++|++||+.||++|++||
T Consensus 332 rG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l-~~~~~~~~~~~~~~~~~~a~al~~ip~~La~Na 410 (480)
T cd03337 332 RGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHAL-SEKAKSIEGVEQWPYKAVASALEVIPRTLAQNC 410 (480)
T ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHH-HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999 888888889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhccC--CCeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhh
Q 012122 395 GLDTQDVIIALKGEHDR--GNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIR 461 (470)
Q Consensus 395 G~d~~~~i~~l~~~~~~--~~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~ 461 (470)
|+|+.+++.+|++.|+. +.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus 411 G~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 479 (480)
T cd03337 411 GANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS 479 (480)
T ss_pred CCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence 99999999999999854 35799999999999999999999999999999999999999999999874
No 20
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-86 Score=625.85 Aligned_cols=449 Identities=28% Similarity=0.445 Sum_probs=425.2
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCC
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 80 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~ 80 (470)
|++-||+++||++++..||.++||||||||+|+|+||+.+.+|+++|+||..|.++||.|.+.++++|.+++.|++ .
T Consensus 75 m~vlhP~akmLvelS~aQD~eaGDGTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~ve---l 151 (534)
T KOG0358|consen 75 MNVLHPAAKMLVELSAAQDSEAGDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVE---L 151 (534)
T ss_pred HhhhChHHHHHHHhhhhccccccCCceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcc---c
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999999997 5
Q ss_pred CcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCC--ccccccceEEEEecCCCcCCcEEEEeEEEecCCCCCC
Q 012122 81 PDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPE--EAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPD 158 (470)
Q Consensus 81 ~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~--~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~ 158 (470)
.|++.|.+-+.|+||||+.++++..+++++++|++++..+. .+.|+++|++.|..||.++|+++++|++|++......
T Consensus 152 sdre~Li~~atTsLnSKvvSq~s~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~~ 231 (534)
T KOG0358|consen 152 SDRESLIKSATTSLNSKVVSQYSSLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKSA 231 (534)
T ss_pred CcHHHHHHHHHhHhhHHHHHhhccccchHHHHHHHhccCcccccccchhhhhhHHhhCCccchhhhhcceEEeeecccCC
Confidence 68899999999999999999999999999999999987653 3789999999999999999999999999998776656
Q ss_pred CccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCC---
Q 012122 159 MKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGI--- 235 (470)
Q Consensus 159 ~~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i--- 235 (470)
-|++++++||-++++.|.++|+++...+.++++.|++.++++|++|+.+.+++|.+ .+| +|++.||+|
T Consensus 232 gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk---~gc------nvLliQKSILRd 302 (534)
T KOG0358|consen 232 GPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKK---AGC------NVLLIQKSILRD 302 (534)
T ss_pred CcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHh---cCC------eEEEEeHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999955 457 488888886
Q ss_pred --CHHHHHHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcccceEEEEEE-CCeeEEEEEccCC-CCeeE
Q 012122 236 --DPLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVL-GEEKYTFVENVKN-PHSCT 311 (470)
Q Consensus 236 --~~~~l~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~v~~~~i-g~~~~~~~~~~~~-~~~~T 311 (470)
+|.++|||.+-+|++++.+.++|+|.+|+.+|++|+.+++.++++.+|+++.+++..- |+.+++.+.++.+ ...+|
T Consensus 303 avsDLAlHfL~klkimvikdieRediefick~l~c~Pia~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g~tvs 382 (534)
T KOG0358|consen 303 AVSDLALHFLAKLKIMVIKDIEREDIEFICKTLGCKPIADIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNAGRTVS 382 (534)
T ss_pred HHHHHHHHHHHhCcEEEEccccHhhHHHHHhhcCCeecchhhhcChhhcCcchhhhhcccCCCccEEEEEEeecCCCceE
Confidence 9999999999999999999999999999999999999999999999999999998743 5568999998877 58999
Q ss_pred EEeeCCCHHHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHH
Q 012122 312 ILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLA 391 (470)
Q Consensus 312 Iii~g~t~~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~ 391 (470)
|++||+++-.++|.+|++|||||++|++++.+.++||||+.|+.+|..| ..++.++.+.+++++++||+|||.||.||+
T Consensus 383 il~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L-~~~a~t~eG~~~yc~rafA~AlEvIP~tLA 461 (534)
T KOG0358|consen 383 ILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRL-SALARTLEGVEAYCWRAFADALEVIPYTLA 461 (534)
T ss_pred EEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHH-HHHHhhhccchhHHHHHHHHHHhcccHhHH
Confidence 9999999999999999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHhccC-CCeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhc
Q 012122 392 ENAGLDTQDVIIALKGEHDR-GNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRA 462 (470)
Q Consensus 392 ~NaG~d~~~~i~~l~~~~~~-~~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~ 462 (470)
+|||++|+.++++||+.|.. ..+.|++..+|.+.||.+..|+.|+.|-.++++.|+|++.+||+||+++.+
T Consensus 462 eNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv~a 533 (534)
T KOG0358|consen 462 ENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILEENVVQPLLVSISAITLATETVRSILKIDDIVNA 533 (534)
T ss_pred hhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHHHhcccceeeeHHHHHHHHHHHHHHhhhhhhccc
Confidence 99999999999999999954 489999999999999999999999999999999999999999999999875
No 21
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.2e-83 Score=671.33 Aligned_cols=407 Identities=40% Similarity=0.637 Sum_probs=389.1
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCC
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 80 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~ 80 (470)
|+++||+++|+++++++||+++||||||+++|+++|++++.+++++|+||+.|++||+.|++.++++|++++++++ .
T Consensus 57 i~~~hp~a~ll~~~~~~~~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~---~ 133 (464)
T cd00309 57 IEVEHPAAKLLVEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPID---V 133 (464)
T ss_pred ccCcCHHHHHHHHHHHHHHhHhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccC---C
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999853 3
Q ss_pred CcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCCcEEEEeEEEecCCCCCCCc
Q 012122 81 PDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMK 160 (470)
Q Consensus 81 ~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~~~ 160 (470)
.+.+.|.++++|+++||+.+.+.++|++++++|+..+.+.+..++.+.|+|++++||++.+|++++|++|++++.++.|+
T Consensus 134 ~~~~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~ 213 (464)
T cd00309 134 EDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMP 213 (464)
T ss_pred CCHHHHHHHhHhcccccccccchHHHHHHHHHHHHHhccccCccccceEEEEecCCCCcccceeeeeEEEecCCCCCCCc
Confidence 47889999999999999999999999999999999997654467888999999999999999999999999999999999
Q ss_pred cccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCCCHHHH
Q 012122 161 RRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSL 240 (470)
Q Consensus 161 ~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i~~~~l 240 (470)
+.++||||++++++|++ +|+++++|++.++
T Consensus 214 ~~~~n~~Ili~~~~Le~--------------------------------------------------lIi~~~~I~~~al 243 (464)
T cd00309 214 KRLENAKILLLDCKLEY--------------------------------------------------VVIAEKGIDDEAL 243 (464)
T ss_pred eeecCceEEEEecCcce--------------------------------------------------EEecCCCcCHHHH
Confidence 99999999999999953 5788989999999
Q ss_pred HHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcccceEEEEEECCeeEEEEEccCCCCeeEEEeeCCCHH
Q 012122 241 DLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDH 320 (470)
Q Consensus 241 ~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIii~g~t~~ 320 (470)
+||.++||++++++++++|+|||++|||+++++++++++..+|+|+.+++.++|+++|++|.++..++.|||+|||||+.
T Consensus 244 ~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrG~t~~ 323 (464)
T cd00309 244 HYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGGKVATILLRGATEV 323 (464)
T ss_pred HHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCcccCccccEEEEEEEcCeeEEEEEecCCCCEEEEEEeCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCCHHH
Q 012122 321 TIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQD 400 (470)
Q Consensus 321 ~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d~~~ 400 (470)
+++|++|+++||++++++++++|++|||||++|++++++| ++++.+.++++++++++|++||+.||++|++|||+|+.+
T Consensus 324 ~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L-~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~ 402 (464)
T cd00309 324 ELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKAL-EELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIE 402 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHH-HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 9999999999999999999999999999999999999999 888888889999999999999999999999999999999
Q ss_pred HHHHHHHhccC-CCeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhh
Q 012122 401 VIIALKGEHDR-GNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIR 461 (470)
Q Consensus 401 ~i~~l~~~~~~-~~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~ 461 (470)
++.+|++.|.. +.++|+|..+|++.||.+.|||||+.+|+++++.|+|+|++|||||++|.
T Consensus 403 ~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 464 (464)
T cd00309 403 VVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred HHHHHHHHhhccCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 99999998854 45789999999999999999999999999999999999999999999974
No 22
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=9.3e-84 Score=678.27 Aligned_cols=445 Identities=35% Similarity=0.590 Sum_probs=424.3
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCC
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 80 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~ 80 (470)
|+++||+++|+++++++|++++||||||+|+|+++|++++.+++++|+||..|++||+.|++.+++.|++++++++
T Consensus 38 l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~---- 113 (485)
T PF00118_consen 38 LKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPIN---- 113 (485)
T ss_dssp STBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEEST----
T ss_pred hhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhhhhccccccchhhhhhhhhhhhhhhhhhhhcccc----
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CcH-HHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCCcEEEEeEEEecCCCCCCC
Q 012122 81 PDK-EILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDM 159 (470)
Q Consensus 81 ~~~-~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~~ 159 (470)
+. +.+.++++|++++|+.+.+.+.|++++++|+..+ ++ .+|+++++++++.|++.+||++++|++|++++.+++|
T Consensus 114 -~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~-~~--~~~~~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~ 189 (485)
T PF00118_consen 114 -NDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSI-KS--NFDLDNIKIIKIPGGSISDSELINGIVLDKGFSSPNM 189 (485)
T ss_dssp -STSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHH-TT--THHGGGEEEEEEESSSSGGEEEESEEEESSSBSSTTS
T ss_pred -ccchhhhhhhcccccccccccchhhhhhhHHHHHHhh-cc--cccccchhhhhhccccccccccccceeeecccccccc
Confidence 33 8999999999999999999999999999999444 32 2788899999999999999999999999999999999
Q ss_pred ccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCCCHHH
Q 012122 160 KRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLS 239 (470)
Q Consensus 160 ~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i~~~~ 239 (470)
++++++|||++++++|+++++ .++++.+++++++..+.+.|++++++.+++|.+.+ +++|+++++|++.+
T Consensus 190 ~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~---------~~lIi~~~~i~~~~ 259 (485)
T PF00118_consen 190 PKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQEKKYLKKILEKIINLG---------VNLIISQKSIDDEA 259 (485)
T ss_dssp BSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTT---------SSEEEESSEBTHHH
T ss_pred ccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhhhhhhccccceEeeec---------cceeeeeccccccc
Confidence 999999999999999999999 89999999999999999999999999999997654 35999999999999
Q ss_pred HHHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcccceEEEEEECCeeEEEEE--ccCCCCeeEEEeeCC
Q 012122 240 LDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVE--NVKNPHSCTILIKGP 317 (470)
Q Consensus 240 l~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~--~~~~~~~~TIii~g~ 317 (470)
+++|.++||++++++++++|++|+++|||++++++++++++.+|+|+.+++..+++++|++|+ ++..++.+||+||||
T Consensus 260 l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~~~Till~g~ 339 (485)
T PF00118_consen 260 LQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSVEEREIGNKKYIFIEGIGCLSSKICTILLRGP 339 (485)
T ss_dssp HHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEEEEETSSEEEEEEEHSESSSSEEEEEEEES
T ss_pred chhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchhhhhhhhhhhcccccccccccccccccccCceEEEeccc
Confidence 999999999999999999999999999999999999999988999999999999999999998 578889999999999
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCC
Q 012122 318 NDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLD 397 (470)
Q Consensus 318 t~~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d 397 (470)
++.+++|++|+++||++++++++++|++|||||++|++|+.+| ++++.+.++++++++++|++||+.||++|++|||+|
T Consensus 340 t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L-~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~ 418 (485)
T PF00118_consen 340 TEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKAL-RKYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLD 418 (485)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHH-HHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTST
T ss_pred cchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhH-HHhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCC
Confidence 9999999999999999999999999999999999999999999 889988899999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCc
Q 012122 398 TQDVIIALKGEHDRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGR 464 (470)
Q Consensus 398 ~~~~i~~l~~~~~~~~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~ 464 (470)
+.+++.+|+..|+.++++|+|+.+|++.||.+.|||||+.+|+++|+.|+|+|++|||||++|.++|
T Consensus 419 ~~~~~~~l~~~h~~~~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A~~~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 419 SSEVISKLKSFHNNGNNYGIDLDTGEIVDMKEAGILDPLLVKISALKSAVEIASLILRIDEIIMAKP 485 (485)
T ss_dssp HHHHHHHHHHHHHSTTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEESS
T ss_pred ceeeehhhHhhhccccccCcCccCCceeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999887778999999999999999999999999999999999999999999999999875
No 23
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-84 Score=612.64 Aligned_cols=454 Identities=29% Similarity=0.459 Sum_probs=429.5
Q ss_pred cccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCCC
Q 012122 2 QIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEP 81 (470)
Q Consensus 2 ~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~~ 81 (470)
-+++|+|++|++.++-||+++|||||||+||+++||++|.+|+.+.+||+.|+.||++|.+.+.+.|.+.++.-..+.+.
T Consensus 70 ~vDnpaAkvLv~~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~k 149 (527)
T KOG0363|consen 70 GVDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEK 149 (527)
T ss_pred CCCCchhhheeccccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999988765433445
Q ss_pred cHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCCcEEEEeEEEecCCCCCCCcc
Q 012122 82 DKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKR 161 (470)
Q Consensus 82 ~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~~~~ 161 (470)
.+++|.++++|.|+||+.+...++|++++++|+++++.+ -+++.|+|+|..||+++||++-+|+++++.+- -+.|+
T Consensus 150 fr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLkGs---~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~ig-v~qpk 225 (527)
T KOG0363|consen 150 FREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLKGS---TNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIG-VNQPK 225 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCC---CCccceeeehhcCCccccccccccceeccccC-CCCcc
Confidence 688999999999999999999999999999999999753 47889999999999999999999999998653 35689
Q ss_pred ccccceeEEeeecccccccccc-cceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCCCHHHH
Q 012122 162 RAENCYILTCNVSLEYEKSEVN-AGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSL 240 (470)
Q Consensus 162 ~~~~~kI~l~~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i~~~~l 240 (470)
+++||||++-|.+++.+|.+.+ +.+...+..++.++..+|+..++.++++|.+++ | |+.+...-|.++-.
T Consensus 226 riena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hg---i------N~FiNRQLiYnyPe 296 (527)
T KOG0363|consen 226 RIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHG---I------NVFINRQLIYNYPE 296 (527)
T ss_pred cccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcC---C------cEEeehhHhhcCHH
Confidence 9999999999999999998864 668899999999999999999999999998765 3 58899989999999
Q ss_pred HHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcccceEEEEEECCeeEEEEEccCCCCeeEEEeeCCCHH
Q 012122 241 DLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDH 320 (470)
Q Consensus 241 ~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIii~g~t~~ 320 (470)
++|.+.||+++...+.+-+||++..||+.++++|++++..++|+|+.+++..+|+++++.|++++....|||++||+|.+
T Consensus 297 qLf~dagi~aIEHADFdGiERLalvtGGeI~STFd~p~~~klG~C~~IeeimiGed~li~FSGv~~GeActIVlrGat~q 376 (527)
T KOG0363|consen 297 QLFADAGIMAIEHADFDGIERLALVTGGEIVSTFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKLGEACTIVLRGATQQ 376 (527)
T ss_pred HHHhhcCcceeecccchhHHHHhhcccceeeeccCCcchhccccchhhHHHhcCccceeeecccccccceEEEEecccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCCHHH
Q 012122 321 TIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQD 400 (470)
Q Consensus 321 ~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d~~~ 400 (470)
++||.+|++|||||++...+++++++.||||.||..|..+ .+++...++++..++.+|++||..+|.+|+.|+|+|+.+
T Consensus 377 ~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av-~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsae 455 (527)
T KOG0363|consen 377 ILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAV-DKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAE 455 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHH-HHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHH
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc-CCCeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCcCCCCC
Q 012122 401 VIIALKGEHD-RGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRKP 469 (470)
Q Consensus 401 ~i~~l~~~~~-~~~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~~~~~~ 469 (470)
++.+||+.|. ++.++|+|..+|++.||.+.||+|++.+|...+.+|.|+|.+|||+|.+|...|..|.|
T Consensus 456 lva~Lra~h~~g~~t~Gld~~~G~i~dm~~~Gi~es~~vK~~vv~sasEaae~ilrvD~Iik~aPR~r~~ 525 (527)
T KOG0363|consen 456 LVAQLRAEHYNGRTTMGLDVRNGEIGDMRELGIVESLKVKQAVVSSASEAAEMILRVDNIIKAAPRERER 525 (527)
T ss_pred HHHHHHHHhhcCCcccccccccCchhhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhcCCccccc
Confidence 9999999995 45789999999999999999999999999999999999999999999999999988876
No 24
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.3e-83 Score=664.62 Aligned_cols=409 Identities=26% Similarity=0.452 Sum_probs=382.3
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCc-ccCCC
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTP-VVMGD 79 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~-~~~~~ 79 (470)
|+++||+++|+++++++|++++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|++++++ +. +
T Consensus 57 l~~~hP~a~ll~~~a~~~~~~~GDGTTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~--~ 134 (472)
T cd03341 57 LEVQHPAAKLLVMASQMQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIE--D 134 (472)
T ss_pred ccccCHHHHHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccC--C
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999876 42 1
Q ss_pred CCcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCC-ccccccceEEEEecCCCcCCcEEEEeEEEecCCCCCC
Q 012122 80 EPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPE-EAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPD 158 (470)
Q Consensus 80 ~~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~-~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~ 158 (470)
..+.+.+.++++|+++||..+ +.++|++++++|+..+.+.+ +.+|+++|+|++++|++.+||++++|++|++.+. .
T Consensus 135 ~~~~~~l~~i~~t~l~sk~~~-~~~~l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~--~ 211 (472)
T cd03341 135 LRNKEEVSKALKTAIASKQYG-NEDFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREPE--G 211 (472)
T ss_pred ccCHHHHHHHHHHHhcccccc-hHHHHHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccceEEeeEEEccccC--C
Confidence 236778999999999999876 68999999999999987542 4789999999999999999999999999987543 4
Q ss_pred CccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCCCHH
Q 012122 159 MKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPL 238 (470)
Q Consensus 159 ~~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i~~~ 238 (470)
+++.++||||++++++|++ + +++|+++++|+|.
T Consensus 212 ~~~~~~n~~Ili~~~~Le~--------------------------------------g---------~~lvi~~~~I~d~ 244 (472)
T cd03341 212 SVKRVKKAKVAVFSCPFDI--------------------------------------G---------VNVIVAGGSVGDL 244 (472)
T ss_pred CceeccCCcEEEEeccccC--------------------------------------C---------CeEEEECCCCCHH
Confidence 4588999999999999964 2 2588999999999
Q ss_pred HHHHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcccceEEEEEECCeeEEEEEccCC-CCeeEEEeeCC
Q 012122 239 SLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKN-PHSCTILIKGP 317 (470)
Q Consensus 239 ~l~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~-~~~~TIii~g~ 317 (470)
+++||.++||++++++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|+++++ ++.+||+||||
T Consensus 245 al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~ 324 (472)
T cd03341 245 ALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGA 324 (472)
T ss_pred HHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 89999999999
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCC
Q 012122 318 NDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLD 397 (470)
Q Consensus 318 t~~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d 397 (470)
|+.+++|++|+++||++++++++++|++|||||++|++++.+| ++++...++++++++++|++||+.||++|++|||+|
T Consensus 325 t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l-~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d 403 (472)
T cd03341 325 TQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKL-KEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLD 403 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHH-HHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999999999999999 888877889999999999999999999999999999
Q ss_pred HHHHHHHHHHhccC-CCeeeEEccCC--CccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhc
Q 012122 398 TQDVIIALKGEHDR-GNIVGLNQHSG--DPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRA 462 (470)
Q Consensus 398 ~~~~i~~l~~~~~~-~~~~gid~~~~--~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~ 462 (470)
+.+++.+|+..|+. +.++|+|+.+| ++.||++.|||||+.+|+++|+.|+|+|++|||||++|.+
T Consensus 404 ~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 471 (472)
T cd03341 404 ATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQIIMA 471 (472)
T ss_pred HHHHHHHHHHHHHccCCeeeeeccCCCCCccChhhccceecHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 99999999988843 56799999999 9999999999999999999999999999999999999865
No 25
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-82 Score=656.86 Aligned_cols=448 Identities=32% Similarity=0.465 Sum_probs=417.6
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCC
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 80 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~ 80 (470)
|+++||+|+|+++++.+||+++||||||+|||+++||+++.+++.+|+||+.|.+||++|.+.++++|++.+++++.
T Consensus 60 ielehp~akll~eva~~qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~--- 136 (524)
T COG0459 60 IELEHPGAKLLVEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSD--- 136 (524)
T ss_pred hhccCchhHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCc---
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999962
Q ss_pred CcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCCcEEEEeEEEecCCC-CCCC
Q 012122 81 PDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSR-HPDM 159 (470)
Q Consensus 81 ~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~-~~~~ 159 (470)
.+.+. +++.|++++|..+.. ++|++++++|+.++.+.+. |++.|.+.+..|++.+++++++|++|++++. ++.|
T Consensus 137 ~~~~~--~~~~t~v~sk~~~~~-~~i~~lv~~Av~~v~~~~~--d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~ 211 (524)
T COG0459 137 SEEEL--KIAITSVASKSANSD-EEIGELVVEAVEKVGKEQS--DLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFM 211 (524)
T ss_pred chhhh--hhhhheeeeeeccCh-HHHHHHHHHHHHHhccccc--ccCCeEEEEecCCCccceEEEeeEEecCCccCCCCC
Confidence 12222 889999999988777 9999999999999976532 8899999999999999999999999999664 5578
Q ss_pred c-cccccceeEEeeecccccccccccceeecCHHHHHHHHHHHH-HHHHHHHHHHHHhcccccCCCCCceEEEecCCCCH
Q 012122 160 K-RRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAER-RQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDP 237 (470)
Q Consensus 160 ~-~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~-~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i~~ 237 (470)
| +.++||+|++++++|++.+++++.++.++++.++..|.+.|+ +.+...+.+++..+ .+.+++++++|+|
T Consensus 212 ~~~~~e~~~Ili~d~~l~~~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g--------~~~vvv~~~gi~D 283 (524)
T COG0459 212 PDKRLENPKILLLDKKLEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGG--------ANVVVVKAPGIDD 283 (524)
T ss_pred CccccccceEEEEccccccccccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcC--------CCEEEEECCCCcH
Confidence 8 899999999999999999999999999999999999999999 99999999997643 3349999999999
Q ss_pred HHHHHHHHcCcEEEecCChhhH-HHHHHHhCCeecccCCCCCCCCCcc--cceEEEEEECCeeEEEEEccCC--CCeeEE
Q 012122 238 LSLDLLARAGIIALRRAKRRNM-ERLVLACGGEAVNSVDDLTPGCLGW--AGLVYEHVLGEEKYTFVENVKN--PHSCTI 312 (470)
Q Consensus 238 ~~l~~l~~~~I~~v~~v~~~~l-~~i~~~tGa~ii~~~~~l~~~~lG~--~~~v~~~~ig~~~~~~~~~~~~--~~~~TI 312 (470)
.+++||.+.+|++++++.++++ ++|++++||++++.++++++..+|. |..+++..+|++.+.+|+++.. +++|||
T Consensus 284 ~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI 363 (524)
T COG0459 284 LAKAYLEDIAILTGRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATI 363 (524)
T ss_pred HHHHHHHhhcceecceecchhhHHHHHHccCceEEeecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEE
Confidence 9999999999999999999999 8999999999999999999999999 9999999999999999999886 789999
Q ss_pred EeeCCCHHHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccc-hhHHHHHHHHHHHhHhHHHHH
Q 012122 313 LIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEG-RAQLGVEAFADALLVVPKTLA 391 (470)
Q Consensus 313 ii~g~t~~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~-~~~~~i~~fa~aL~~ip~~L~ 391 (470)
+|||+|+.+++|.+|+++|||+++++++++|++|||||++|++++.+| ++++.+.++ ++|+++++|++|||.||++|+
T Consensus 364 ~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L-~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La 442 (524)
T COG0459 364 LVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRL-REYAMTVEGGDEQLGIEAFARALEAPPRQLA 442 (524)
T ss_pred EECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHH-HhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 777444455 999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHhccCCCeeeEEccCCCc-cCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCcCC
Q 012122 392 ENAGLDTQDVIIALKGEHDRGNIVGLNQHSGDP-IDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNM 466 (470)
Q Consensus 392 ~NaG~d~~~~i~~l~~~~~~~~~~gid~~~~~~-~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~~~ 466 (470)
+|||+|+.+++.+|++.|. ..++|+|..+|++ .||.+.|||||+.+|.++|++|+++|++|||+|++|.+.|..
T Consensus 443 ~NaG~d~~~v~~~L~~~~~-~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~~~~ 517 (524)
T COG0459 443 ENAGLDPIEVLSKLRSAHA-TTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEE 517 (524)
T ss_pred HhCCCCHHHHHHHHHhccc-CCccceeccCCccccchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence 9999999999999999874 3559999999999 779999999999999999999999999999999999998863
No 26
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-82 Score=610.36 Aligned_cols=455 Identities=67% Similarity=1.032 Sum_probs=439.3
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCC
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 80 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~ 80 (470)
|+++||.+-++..++..||+..||||||+|+|+|+|+++|..++.+|+||..|.+||+.|.+.++++|+..+.++
T Consensus 66 mQiqhPTa~lIakaatAqdd~tGDGttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~----- 140 (520)
T KOG0359|consen 66 MQIQHPTASLIAKVATAQDDITGDGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREV----- 140 (520)
T ss_pred HhhcCchHHHHHHHHHHhhcccCCCcceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccch-----
Confidence 689999999999999999999999999999999999999999999999999999999999999999999777666
Q ss_pred CcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCCcEEEEeEEEecCCCCCCCc
Q 012122 81 PDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMK 160 (470)
Q Consensus 81 ~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~~~ 160 (470)
+++.|..+++|++++|+.....+.+++++++|++.+......+|+.+++|+++...+..|+.+++|++++++..||.||
T Consensus 141 -~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~~~~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp 219 (520)
T KOG0359|consen 141 -DRETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMP 219 (520)
T ss_pred -hHHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeeccCCCCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCcccc
Confidence 6899999999999999999999999999999999998555679999999999999999999999999999999999999
Q ss_pred cccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCCCHHHH
Q 012122 161 RRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSL 240 (470)
Q Consensus 161 ~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i~~~~l 240 (470)
+.++|+.|+++|.+|||+|+|+++.|.+++++|.+.+...|++++.+++++|+++++..|. +||++||||||..+
T Consensus 220 ~~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~-----fvvinqkGidp~sl 294 (520)
T KOG0359|consen 220 RRVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCE-----FVVINQKGIDPTSL 294 (520)
T ss_pred cchhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcce-----EEEecccCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999993 89999999999999
Q ss_pred HHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcccceEEEEEECCeeEEEEEccCCCCeeEEEeeCCCHH
Q 012122 241 DLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDH 320 (470)
Q Consensus 241 ~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIii~g~t~~ 320 (470)
+.|.++||+++||.++..|||+..+||+..+++++||+++.+|+|+.|++.++|+++|+|+++|++|+.|||+|+||+++
T Consensus 295 d~~a~~gIlaLRRAKRRNmERL~lacGG~a~nsvddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p~S~TiLikgpnkh 374 (520)
T KOG0359|consen 295 DSLAKSGILALRRAKRRNMERLVLACGGEAVNSVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNPSSVTILIKGPNKH 374 (520)
T ss_pred hhhhhcchHHHHHHhhhhHHHHHHhhccceecccccCChhhccccceeEEeeccceeeEeeecCCCCcceEEEEeCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCCHHH
Q 012122 321 TIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQD 400 (470)
Q Consensus 321 ~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d~~~ 400 (470)
.+.+++++++|+|++++++++++.++||+|++|.+++++| +...++.+++.++++++|++||..+|++|+.|+|+|..+
T Consensus 375 t~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~l-r~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe 453 (520)
T KOG0359|consen 375 TITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHL-RESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQE 453 (520)
T ss_pred hHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHH-HHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHH
Confidence 9999999999999999999999999999999999999999 677788899999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCcCCCC
Q 012122 401 VIIALKGEHDRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRK 468 (470)
Q Consensus 401 ~i~~l~~~~~~~~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~~~~~ 468 (470)
.+.+|...|... ..|+|+.+|+.++....||||.+.||.++|.+++-+|+.||-+|+++.++....|
T Consensus 454 ~l~~l~~e~~~~-~~g~dl~~g~~~~~~~~gi~Dny~v~~~~l~s~~via~nlLlvDEi~rAG~~~lk 520 (520)
T KOG0359|consen 454 TLVSLKKEHEVT-LRGLDLFRGEECDPSRKGIYDNYSVKKQLLRSEAVIATNLLLVDEIIRAGMSSLK 520 (520)
T ss_pred HHHHHHHhhhhh-hcccccccCCccchhhccccchHHHHHHHhhhhHHHHHHHHHHHHHHHccccccC
Confidence 999999888544 4599999999999999999999999999999999999999999999999887654
No 27
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-82 Score=606.33 Aligned_cols=452 Identities=28% Similarity=0.476 Sum_probs=431.0
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCC
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 80 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~ 80 (470)
+++.||+|+-+.+++.+||+++|||||||++|++++|.++..++++|+||+.|+++|.+|++.++..++..++|++ .
T Consensus 68 i~Vahpaaksmiel~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d---~ 144 (527)
T KOG0364|consen 68 IDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVD---V 144 (527)
T ss_pred HhhcCcchhhHhhhhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCC---c
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999887 4
Q ss_pred CcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCC-cccccc-ceEEEEecCCCcCCcEEEEeEEEecCCCCCC
Q 012122 81 PDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPE-EAIDLF-MVELMHMRHKFDVDTRLVEGLVLDHGSRHPD 158 (470)
Q Consensus 81 ~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~-~~~~~~-~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~ 158 (470)
.+...+..+++++..+|+.+.|++.++.++.+|+.++...+ +.+|+. ++++.|++||.+.+|++++|+.+++...||.
T Consensus 145 ~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpk 224 (527)
T KOG0364|consen 145 KDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPK 224 (527)
T ss_pred ccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCcccccccceecceeeccccCcHH
Confidence 47888999999999999999999999999999999987543 358875 8999999999999999999999999999999
Q ss_pred CccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCCCHH
Q 012122 159 MKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPL 238 (470)
Q Consensus 159 ~~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i~~~ 238 (470)
|.+.++||||++++|||+|.+.+.++.+.+...+++...++.|++++..++..|+.+. |++|+++|+++|.
T Consensus 225 mrr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~---------pDlVitekG~sdl 295 (527)
T KOG0364|consen 225 MRRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVK---------PDLVITEKGVSDL 295 (527)
T ss_pred HHHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeec---------ccEEEeccchhHH
Confidence 9999999999999999999999999999999999999999999999999999998875 6799999999999
Q ss_pred HHHHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcc-cceEEEEEECCeeEEEEEccCCCCeeEEEeeCC
Q 012122 239 SLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGW-AGLVYEHVLGEEKYTFVENVKNPHSCTILIKGP 317 (470)
Q Consensus 239 ~l~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~TIii~g~ 317 (470)
+++||.++||.+++++++.|..|+++++||+++++.+++.+.+.|. |+.++...+|++.|.||..|.+|++|||++|||
T Consensus 296 a~hyl~k~~iT~~rr~rKtDn~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pkaCtillrg~ 375 (527)
T KOG0364|consen 296 AQHYLLKANITAIRRLRKTDNNRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPKACTILLRGP 375 (527)
T ss_pred HHHHHHhcCchhhhhhhccccchhhhhcCceeccChhhCchhccCcccceeeeeccCchhhhhhhhcCCCcceEEEeccC
Confidence 9999999999999999999999999999999999999999999996 789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCC
Q 012122 318 NDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLD 397 (470)
Q Consensus 318 t~~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d 397 (470)
++.+++|.+|.++||+.+.|+.+-+|+++|||||+||.+|+.| .+.+...++-+++.+.+.|.|||.+||+|++|+|.+
T Consensus 376 skdil~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs~~L-~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan 454 (527)
T KOG0364|consen 376 SKDILNEVERNLQDAMGVARNVIINPKLVPGGGATEMAVSHEL-RQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGAN 454 (527)
T ss_pred chhHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHHHHH-HHHHhhccchhccchhhhhcCceeccHHHHhhcCcc
Confidence 9999999999999999999999999999999999999999999 777777889999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCC-CeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCcC
Q 012122 398 TQDVIIALKGEHDRG-NIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRN 465 (470)
Q Consensus 398 ~~~~i~~l~~~~~~~-~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~~ 465 (470)
++..++.++..|+.+ ..+|+|..+|.++||.+.++|||..+|.+..++|++.+++|||+|+++...+.
T Consensus 455 ~Ir~lTalr~kh~~G~~~~gi~g~tg~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg~kk 523 (527)
T KOG0364|consen 455 PIRALTALRAKHKEGQRVWGIDGETGVIVDMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSGKKK 523 (527)
T ss_pred HHHHHHHHHHHhcCcceeecccCceeeEeeeeeccccchhhhhhhhhhHHHHHHHHHHhhhceeeeeee
Confidence 999999999999655 67899999999999999999999999999999999999999999999987653
No 28
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-77 Score=584.61 Aligned_cols=451 Identities=26% Similarity=0.413 Sum_probs=416.3
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCC
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE 80 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~ 80 (470)
++++||+|+||++++++|+++.||||++||+|+++||++|.+||..|++|.+|++||..|.+.+++.|+++.+..- .+.
T Consensus 75 lev~HPaakllv~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~-~d~ 153 (537)
T KOG0362|consen 75 LEVEHPAAKLLVEATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSI-GDL 153 (537)
T ss_pred hhccCcHHHHHHHHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhc-ccc
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999855421 112
Q ss_pred CcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCCcEEEEeEEEecCCCCCCCc
Q 012122 81 PDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMK 160 (470)
Q Consensus 81 ~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~~~ 160 (470)
.|.+ .+++++++||.+ ...+++++++++|++++.+. ..|++++|++||+.|++.++|+++.|++|++.... -+
T Consensus 154 ~d~~---~~~rs~i~skq~-~~ed~l~~lVa~ac~si~p~-~~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~eG--~v 226 (537)
T KOG0362|consen 154 EDKE---WALRSVIMSKQY-GNEDFLTKLVAKACVSILPL-MSFNVDNIRVCKILGGGLEDSCVVCGMVFKRDPEG--EV 226 (537)
T ss_pred cChH---HHHHHHHHHhhc-chHHHHHHHHHHHHHhhccc-ccccccceEEEEEecCCcccceeeEEEEeccccCC--cc
Confidence 2443 778999988854 46889999999999999876 56999999999999999999999999999976542 23
Q ss_pred cccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCCCHHHH
Q 012122 161 RRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSL 240 (470)
Q Consensus 161 ~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i~~~~l 240 (470)
+..+.+||++++||++...+|+++++.+++++|+.+|.+.|+..++.+++.|...+ .++|++.+.+++.++
T Consensus 227 ~~ak~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~g---------vkViV~~g~V~em~L 297 (537)
T KOG0362|consen 227 KSAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAG---------VKVIVSGGKVDEMTL 297 (537)
T ss_pred cccccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcC---------CeEEEecCccchhhh
Confidence 77789999999999999999999999999999999999999999999999997643 259999999999999
Q ss_pred HHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcccceEEEEEECCeeEEEEEc-cCCCCeeEEEeeCCCH
Q 012122 241 DLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVEN-VKNPHSCTILIKGPND 319 (470)
Q Consensus 241 ~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~-~~~~~~~TIii~g~t~ 319 (470)
+||++++|++++.-++.||+|||+..||++++++..+.+..+|+|++|+..++|++.++.|.. +...++.|++|||++.
T Consensus 298 hflnky~ImVlqi~Sk~eLrrlcrtvGA~~l~rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~ 377 (537)
T KOG0362|consen 298 HFLNKYKIMVLQINSKFDLRRLCRTVGATALPRLFPPAPEELGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQ 377 (537)
T ss_pred hhhccccEEEEEeccHhhHHHHHHHcCCccchhccCCCCccccccceeeeeecCCceEEEEeeccCCCceeEEEEcccch
Confidence 999999999999999999999999999999999999999999999999999999999998864 4457899999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCCHH
Q 012122 320 HTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQ 399 (470)
Q Consensus 320 ~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d~~ 399 (470)
..+|+.||+++|++++.+...++++++||+|++|++|+.+| .+++...++..|++++.||+||+.+|++|++|+|++..
T Consensus 378 s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i-~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~ 456 (537)
T KOG0362|consen 378 SILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQI-SSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVT 456 (537)
T ss_pred hhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHH-HHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCeeeEEccCC-CccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCcC-CCCC
Q 012122 400 DVIIALKGEHDRGNIVGLNQHSG-DPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRN-MRKP 469 (470)
Q Consensus 400 ~~i~~l~~~~~~~~~~gid~~~~-~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~~-~~~~ 469 (470)
+++.+|...|..+.+.|+|+..+ ...|+.+.||||-+..|.++++.|+|+|+++|++|+||+++++ |.||
T Consensus 457 evia~ly~~h~~g~~~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak~aggp~~ 528 (537)
T KOG0362|consen 457 EVIAKLYAVHQGGKNLGMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAKKAGGPKP 528 (537)
T ss_pred HHHHHHHHhhcCCCcceeeeeccccccChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEecccCCCCC
Confidence 99999999998677899999877 4889999999999999999999999999999999999999987 4444
No 29
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-79 Score=592.95 Aligned_cols=451 Identities=27% Similarity=0.468 Sum_probs=423.7
Q ss_pred CcccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhh-ccCcccCCC
Q 012122 1 MQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEK-FKTPVVMGD 79 (470)
Q Consensus 1 ~~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~-~s~~~~~~~ 79 (470)
|.++||++++|++.++.||+++|||||+||+++++|++++.+|+..++||..|++||+.|...+++++.+ .++|++
T Consensus 68 l~V~HPa~KiLvelaq~qd~evgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd--- 144 (545)
T KOG0360|consen 68 LEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVD--- 144 (545)
T ss_pred hhhcchHHHHHHHHHHhccccccCCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehh---
Confidence 4689999999999999999999999999999999999999999999999999999999999999999876 577776
Q ss_pred CCcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCC---C-ccccccceEEEEecCCCcCCcEEEEeEEEecCCC
Q 012122 80 EPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKP---E-EAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSR 155 (470)
Q Consensus 80 ~~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~---~-~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~ 155 (470)
.+..+.|.++++|+++||+.....++|+++++||++.++-- + ....++.++|.|..|.+.-+|.+++|+.++....
T Consensus 145 ~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~a 224 (545)
T KOG0360|consen 145 SLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVA 224 (545)
T ss_pred hcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHh
Confidence 66889999999999999999999999999999999987522 1 2456788999999999999999999999999988
Q ss_pred CCCCccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCC
Q 012122 156 HPDMKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGI 235 (470)
Q Consensus 156 ~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i 235 (470)
+..||+++.|+||++++++|...+.+++..+.+.++++++.+.+.|....+.++++|+..+ .|||+++++|
T Consensus 225 sq~m~~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~g---------anvVLtt~gI 295 (545)
T KOG0360|consen 225 SQMMPLRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATG---------ANVVLTTGGI 295 (545)
T ss_pred hhccccccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcC---------CcEEEEcCCc
Confidence 8899999999999999999999999999999999999999999999999999999998754 2699999999
Q ss_pred CHHHHHHHHHcCcEEEecCChhhHHHHHHHhCCeecccCCCC------CCCCCcccceEEEEEECCeeEEEEEccCCCCe
Q 012122 236 DPLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDL------TPGCLGWAGLVYEHVLGEEKYTFVENVKNPHS 309 (470)
Q Consensus 236 ~~~~l~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l------~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~ 309 (470)
||.++.||++.|++++||+.+++|++|+++||+++++++.++ ++..+|+|+.|.+.+|+++.++++.+.+.. .
T Consensus 296 ddmc~K~~veagamAVrR~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka~-~ 374 (545)
T KOG0360|consen 296 DDMCLKYFVEAGAMAVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKAT-S 374 (545)
T ss_pred cHHHHHHHHHcchhhhHHHHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCccc-e
Confidence 999999999999999999999999999999999999998854 556799999999999999999999988766 9
Q ss_pred eEEEeeCCCHHHHHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHH
Q 012122 310 CTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKT 389 (470)
Q Consensus 310 ~TIii~g~t~~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~ 389 (470)
++|++||++++.+||++|++||||++++..++.+++||||||+|.+|+.|| ++|+.+..+++|+++..|+.||..||++
T Consensus 375 aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~yl-e~~a~s~~srE~laiaefa~all~ipkt 453 (545)
T KOG0360|consen 375 ASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSIYL-ENFATSVGSREQLAIAEFAAALLSIPKT 453 (545)
T ss_pred eeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHHHH-HhhcccCccHHHHHHHHHHHHHhcchHH
Confidence 999999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHhcc---CC------CeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhh
Q 012122 390 LAENAGLDTQDVIIALKGEHD---RG------NIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVI 460 (470)
Q Consensus 390 L~~NaG~d~~~~i~~l~~~~~---~~------~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii 460 (470)
|+.|++.|+.++++++|+.|+ .+ +++|+|+.+|++.|.++.|+++|..+|..+|+.|+|.+.++||+|+++
T Consensus 454 la~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li 533 (545)
T KOG0360|consen 454 LAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLI 533 (545)
T ss_pred HhhhhccccccccccccCCchhhccCCccccchhhCccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcchhhhh
Confidence 999999999999999999883 11 589999999999999999999999999999999999999999999999
Q ss_pred hcCcC
Q 012122 461 RAGRN 465 (470)
Q Consensus 461 ~~~~~ 465 (470)
.-.|.
T Consensus 534 ~l~~~ 538 (545)
T KOG0360|consen 534 KLLPE 538 (545)
T ss_pred hcCcc
Confidence 87654
No 30
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.1e-76 Score=623.21 Aligned_cols=408 Identities=22% Similarity=0.350 Sum_probs=366.2
Q ss_pred CcccCh----HHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCccc
Q 012122 1 MQIQNP----TAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVV 76 (470)
Q Consensus 1 ~~~~hP----~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~ 76 (470)
|+++|| +|+|++++|++||+++||||||+|+|+++||+++.+|+++|+||..|++||+.|++.++++|+++++|++
T Consensus 59 i~~~hp~~~~~a~ll~~~a~~qd~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~ 138 (542)
T PRK12849 59 IELEDPFENLGAQLVKEVASKTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVS 138 (542)
T ss_pred cccCCccHhHHHHHHHHHHHhcCCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 678999 9999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCCCCcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCC-cEEEEeEEEecCCC
Q 012122 77 MGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVD-TRLVEGLVLDHGSR 155 (470)
Q Consensus 77 ~~~~~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~-s~li~G~vl~~~~~ 155 (470)
+.+.|.++|+|+++ +.+++++++++|+..+.+. +.++ +. .|++.+| +++++|++|++++.
T Consensus 139 -----~~~~l~~va~ts~~------~~~~l~~lv~~Av~~v~~~-g~i~-----i~--~g~~~~d~~~~v~G~~~~~g~~ 199 (542)
T PRK12849 139 -----GSEEIAQVATISAN------GDEEIGELIAEAMEKVGKD-GVIT-----VE--ESKTLETELEVTEGMQFDRGYL 199 (542)
T ss_pred -----CHHHHHHHHHHhcC------ChHHHHHHHHHHHHHhccC-CcEe-----EE--eCCCcceeEEEEEeEEEecCcc
Confidence 67789999999875 4689999999999988642 2333 22 5888775 89999999999999
Q ss_pred CCC-------CccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceE
Q 012122 156 HPD-------MKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFV 228 (470)
Q Consensus 156 ~~~-------~~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~v 228 (470)
+|+ |++.++||+|+++++.+ ++++++. ..++++.+.+ .+ +
T Consensus 200 ~~~~~~~~~~~~~~~~n~~Ili~d~~i-------------~~~~~~~-----------~~l~~i~~~~--------~~-l 246 (542)
T PRK12849 200 SPYFVTDPERMEAVLEDPLILLTDKKI-------------SSLQDLL-----------PLLEKVAQSG--------KP-L 246 (542)
T ss_pred cCcccccccCceEEeeCcEEEeecCCc-------------CCHHHHH-----------HHHHHHHHhC--------CC-E
Confidence 885 47889999999999966 3344433 3456665543 33 7
Q ss_pred EEecCCCCHHHHHHHHHc------CcEEEecCC-----hhhHHHHHHHhCCeecc-----cCCCCCCCCCcccceEEEEE
Q 012122 229 VINQKGIDPLSLDLLARA------GIIALRRAK-----RRNMERLVLACGGEAVN-----SVDDLTPGCLGWAGLVYEHV 292 (470)
Q Consensus 229 Ii~~~~i~~~~l~~l~~~------~I~~v~~v~-----~~~l~~i~~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ 292 (470)
||++++|+|.++++|.++ +|+++++++ +++++|||.+|||++++ ++++++++++|+|+.|++
T Consensus 247 vI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~-- 324 (542)
T PRK12849 247 LIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTI-- 324 (542)
T ss_pred EEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEE--
Confidence 788889999999999999 999999987 45699999999999999 688999899999999984
Q ss_pred ECCeeEEEEEccCCC-----------------------------------CeeEEEeeCCCHHHHHHHHHHHHhHHHHHH
Q 012122 293 LGEEKYTFVENVKNP-----------------------------------HSCTILIKGPNDHTIAQIKDAVRDGLRAVK 337 (470)
Q Consensus 293 ig~~~~~~~~~~~~~-----------------------------------~~~TIii~g~t~~~l~e~~~~l~dal~~~~ 337 (470)
+.++|++++++.++ +.+||+|||+|+.+++|++|+++||+++++
T Consensus 325 -~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~ 403 (542)
T PRK12849 325 -TKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATR 403 (542)
T ss_pred -eeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 55889999888764 489999999999999999999999999999
Q ss_pred HHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCCHHHHHHHHHHhccCCCeeeE
Q 012122 338 NTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGL 417 (470)
Q Consensus 338 ~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d~~~~i~~l~~~~~~~~~~gi 417 (470)
+++++| +|||||++|++++.+| ++++ +.++++|+++++|++||+.||++|++|||+|+.+++.+|++.| .++|+
T Consensus 404 ~a~~~g-~VpGGGa~e~~ls~~L-~~~~-~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~---~~~G~ 477 (542)
T PRK12849 404 AAVEEG-IVPGGGVALLRAAKAL-DELA-GLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE---DGFGF 477 (542)
T ss_pred HHHHcC-eecCCCHHHHHHHHHH-HHhh-CCChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC---CCcce
Confidence 999997 9999999999999999 8888 7889999999999999999999999999999999999998875 46999
Q ss_pred EccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCcCCCCC
Q 012122 418 NQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRKP 469 (470)
Q Consensus 418 d~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~~~~~~ 469 (470)
|+.+|++.||++.|||||+.+|.++|+.|+|+|++||+||++|..+|.+++|
T Consensus 478 d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~ 529 (542)
T PRK12849 478 NAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADKPEEEDP 529 (542)
T ss_pred eCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcCCccCCC
Confidence 9999999999999999999999999999999999999999999998877665
No 31
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.3e-76 Score=620.78 Aligned_cols=406 Identities=23% Similarity=0.391 Sum_probs=368.5
Q ss_pred CcccCh----HHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCccc
Q 012122 1 MQIQNP----TAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVV 76 (470)
Q Consensus 1 ~~~~hP----~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~ 76 (470)
|+++|| +++|+++++++||+++||||||+|+|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++
T Consensus 59 i~~~hp~~~~~akll~e~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~ 138 (542)
T PRK00013 59 IELEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVE 138 (542)
T ss_pred ccCCCchhhHHHHHHHHHHHhcCcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 678999 7999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCCcEEEEeEEEecCCCC
Q 012122 77 MGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRH 156 (470)
Q Consensus 77 ~~~~~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~ 156 (470)
+.+.|.++|.|+++ +.+.+++++++|+..+.+. + .|+|.+..| ...++++++|++|+++|.+
T Consensus 139 -----~~~~l~~va~ts~~------~~~~ls~lv~~Av~~v~~~-g-----~i~i~~~~~-~~~~~~~v~G~~~~~g~~~ 200 (542)
T PRK00013 139 -----DKEEIAQVATISAN------GDEEIGKLIAEAMEKVGKE-G-----VITVEESKG-FETELEVVEGMQFDRGYLS 200 (542)
T ss_pred -----CHHHHHHHHHhccc------chHHHHHHHHHHHHHhCcC-C-----cEEEEEcCC-CCceEEEEEeEEecCCccc
Confidence 67889999998875 4788999999999988542 1 377777776 8889999999999999999
Q ss_pred CCC-------ccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEE
Q 012122 157 PDM-------KRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVV 229 (470)
Q Consensus 157 ~~~-------~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vI 229 (470)
|+| ++.++||+|+++|+++ ++++++. ..+++|.+.+ .+ ||
T Consensus 201 ~~~~~~~~~~~~~~~n~~Ilv~d~~i-------------~~~~~l~-----------~~l~~i~~~g--------~~-lv 247 (542)
T PRK00013 201 PYFVTDPEKMEAELENPYILITDKKI-------------SNIQDLL-----------PVLEQVAQSG--------KP-LL 247 (542)
T ss_pred ccccccccCCeEEEecCEEEEEcCcc-------------CCHHHHH-----------HHHHHHHHhC--------CC-EE
Confidence 865 7889999999999966 3444443 4466675543 33 77
Q ss_pred EecCCCCHHHHHHHHHcC------cEEEecCC-----hhhHHHHHHHhCCeecc-----cCCCCCCCCCcccceEEEEEE
Q 012122 230 INQKGIDPLSLDLLARAG------IIALRRAK-----RRNMERLVLACGGEAVN-----SVDDLTPGCLGWAGLVYEHVL 293 (470)
Q Consensus 230 i~~~~i~~~~l~~l~~~~------I~~v~~v~-----~~~l~~i~~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~i 293 (470)
+++++|+|.++++|..++ |+++++++ +++|+|||.+|||++++ ++++++++++|+|+.+++
T Consensus 248 i~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~--- 324 (542)
T PRK00013 248 IIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVV--- 324 (542)
T ss_pred EECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEE---
Confidence 788899999999999997 89999886 88999999999999999 799999999999999984
Q ss_pred CCeeEEEEEccCCCC-----------------------------------eeEEEeeCCCHHHHHHHHHHHHhHHHHHHH
Q 012122 294 GEEKYTFVENVKNPH-----------------------------------SCTILIKGPNDHTIAQIKDAVRDGLRAVKN 338 (470)
Q Consensus 294 g~~~~~~~~~~~~~~-----------------------------------~~TIii~g~t~~~l~e~~~~l~dal~~~~~ 338 (470)
..++|++|+++.+++ .+||+|||+|+.+++|++|+++||++++++
T Consensus 325 ~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~ 404 (542)
T PRK00013 325 TKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRA 404 (542)
T ss_pred ecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 458899998887765 789999999999999999999999999999
Q ss_pred HhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCCHHHHHHHHHHhccCCCeeeEE
Q 012122 339 TIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLN 418 (470)
Q Consensus 339 ~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d~~~~i~~l~~~~~~~~~~gid 418 (470)
++++| +|||||++|++++.+| +++ .+.++++|+++++|++||+.||++|++|||+|+.+++.+|+..| ++++|+|
T Consensus 405 al~~g-~VpGGGa~e~~~s~~L-~~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~--~~~~G~d 479 (542)
T PRK00013 405 AVEEG-IVPGGGVALLRAAPAL-EAL-KGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGK--GKGYGYN 479 (542)
T ss_pred HHHcC-cccCcHHHHHHHHHHH-HHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc--CCCEeEe
Confidence 99997 9999999999999999 888 67789999999999999999999999999999999999999887 5689999
Q ss_pred ccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCcC
Q 012122 419 QHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRN 465 (470)
Q Consensus 419 ~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~~ 465 (470)
+.+|++.||++.|||||+.+|.++|+.|+++|++||+||++|..+|.
T Consensus 480 ~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~ 526 (542)
T PRK00013 480 AATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADKPE 526 (542)
T ss_pred CCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999998774
No 32
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=5.6e-75 Score=613.26 Aligned_cols=407 Identities=21% Similarity=0.332 Sum_probs=363.5
Q ss_pred CcccCh----HHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCccc
Q 012122 1 MQIQNP----TAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVV 76 (470)
Q Consensus 1 ~~~~hP----~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~ 76 (470)
|+++|| +++|++++|++||+++||||||+|+||++||+++.+++++|+||..|++||+.|.+.+++.|+++++|++
T Consensus 71 i~~~~p~~~~~a~ll~~~a~~qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~ 150 (555)
T PTZ00114 71 IEFSDRFENVGAQLIRQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVK 150 (555)
T ss_pred cCcCCcchhHHHHHHHHHHHhhccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 567777 9999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCCc-EEEEeEEEecCCC
Q 012122 77 MGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDT-RLVEGLVLDHGSR 155 (470)
Q Consensus 77 ~~~~~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~s-~li~G~vl~~~~~ 155 (470)
+.+.|.++|+|++++ .+.+++++++|+..+.+.+ .|.+..|++..++ ++++|++|++++.
T Consensus 151 -----~~~~l~~va~ts~~~------~~~l~~li~eAv~~vg~~g--------~I~~~~g~~~~ds~~~v~G~~~~~g~~ 211 (555)
T PTZ00114 151 -----TKEDILNVATISANG------DVEIGSLIADAMDKVGKDG--------TITVEDGKTLEDELEVVEGMSFDRGYI 211 (555)
T ss_pred -----CHHHHHHHHHHHcCC------hHHHHHHHHHHHHHhCcCC--------cEEEcCCCCccceEEEEEEEEEecccc
Confidence 677899999999865 5689999999999886421 2677889999998 7999999999999
Q ss_pred CCCC-------ccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceE
Q 012122 156 HPDM-------KRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFV 228 (470)
Q Consensus 156 ~~~~-------~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~v 228 (470)
+|+| ++.++||+|++++++|+ ++++ +...++++.+.+ .| +
T Consensus 212 ~~~~~~~~~~~~~~l~~~~Ili~d~~L~-------------~~~~-----------i~~~le~i~~~~--------~~-l 258 (555)
T PTZ00114 212 SPYFVTNEKTQKVELENPLILVTDKKIS-------------SIQS-----------ILPILEHAVKNK--------RP-L 258 (555)
T ss_pred ccccccccccCeEEecCCEEEEEcCCCC-------------CHHH-----------HHHHHHHHHHhC--------CC-E
Confidence 9865 78899999999999986 2222 334456665543 34 6
Q ss_pred EEecCCCCHHHHHHHHHcC------cEEEec-----CChhhHHHHHHHhCCeecccC------CCCCCCCCcccceEEEE
Q 012122 229 VINQKGIDPLSLDLLARAG------IIALRR-----AKRRNMERLVLACGGEAVNSV------DDLTPGCLGWAGLVYEH 291 (470)
Q Consensus 229 Ii~~~~i~~~~l~~l~~~~------I~~v~~-----v~~~~l~~i~~~tGa~ii~~~------~~l~~~~lG~~~~v~~~ 291 (470)
+|++++|++.++++|..++ |+++++ +++++|+|||.+|||+++++. +++++.++|+|+.|++.
T Consensus 259 lI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~ 338 (555)
T PTZ00114 259 LIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVT 338 (555)
T ss_pred EEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEE
Confidence 6777899999999999996 999988 567999999999999999997 77888889999999966
Q ss_pred EECCeeEEEEEccC-----------------------------------CCCeeEEEeeCCCHHHHHHHHHHHHhHHHHH
Q 012122 292 VLGEEKYTFVENVK-----------------------------------NPHSCTILIKGPNDHTIAQIKDAVRDGLRAV 336 (470)
Q Consensus 292 ~ig~~~~~~~~~~~-----------------------------------~~~~~TIii~g~t~~~l~e~~~~l~dal~~~ 336 (470)
+ ++++++.++. +++.+||+|||+|+.+++|++|+++||++++
T Consensus 339 ~---~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~ 415 (555)
T PTZ00114 339 K---DETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNAT 415 (555)
T ss_pred e---ceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 5 5667776655 5689999999999999999999999999999
Q ss_pred HHHhhcCccccCCChHHHHHHHHHHHHHhc--cccchhHHHHHHHHHHHhHhHHHHHHhcCCCHHHHHHHHHHhccCCCe
Q 012122 337 KNTIEDEAVVLGAGAFEVAARQYLVNEVKK--TVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNI 414 (470)
Q Consensus 337 ~~~~~~~~vvpGGG~~E~~la~~L~~~~~~--~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d~~~~i~~l~~~~~~~~~ 414 (470)
++++++| +|||||++|+++|.+| ++++. ..++++|+++++|++||+.||++|++|||+|+.+++.+|++ +.+++
T Consensus 416 k~a~~~g-vVpGGGa~e~~~s~~L-~~~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~--~~~~~ 491 (555)
T PTZ00114 416 RAAVEEG-IVPGGGVALLRASKLL-DKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILE--KKDPS 491 (555)
T ss_pred HHHHhcC-cccCCcHHHHHHHHHH-HHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh--cCCCC
Confidence 9999988 9999999999999999 88875 57899999999999999999999999999999999999976 34567
Q ss_pred eeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCcCC
Q 012122 415 VGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNM 466 (470)
Q Consensus 415 ~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~~~ 466 (470)
+|+|..+|++.||++.|||||+.+|.++|+.|+++|++||+||++|...+..
T Consensus 492 ~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~ 543 (555)
T PTZ00114 492 FGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAIVDLPKE 543 (555)
T ss_pred EeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHHHhCCcc
Confidence 9999999999999999999999999999999999999999999999987643
No 33
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=5.7e-75 Score=608.81 Aligned_cols=400 Identities=24% Similarity=0.382 Sum_probs=362.0
Q ss_pred CcccCh----HHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCccc
Q 012122 1 MQIQNP----TAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVV 76 (470)
Q Consensus 1 ~~~~hP----~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~ 76 (470)
|+++|| +++|+++++++||+++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|++
T Consensus 57 i~~~hp~~~~~a~ll~~~a~~qd~e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~ 136 (520)
T cd03344 57 IELEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVK 136 (520)
T ss_pred cccCCcchhHHHHHHHHHHhhhccccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 678999 9999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCC-cEEEEeEEEecCCC
Q 012122 77 MGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVD-TRLVEGLVLDHGSR 155 (470)
Q Consensus 77 ~~~~~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~-s~li~G~vl~~~~~ 155 (470)
+.+.+.++|+|++++ .+.+++++++|+..+.+. + .|.+ .+|++..| +++++|++|++++.
T Consensus 137 -----~~~~l~~va~ts~~~------~~~l~~lv~~A~~~v~~~-~-----~i~v--~~g~~~~d~~~~~~G~~~~~g~~ 197 (520)
T cd03344 137 -----TKEEIAQVATISANG------DEEIGELIAEAMEKVGKD-G-----VITV--EEGKTLETELEVVEGMQFDRGYL 197 (520)
T ss_pred -----CHHHHHHHHHHhcCC------hHHHHHHHHHHHHHhccC-C-----cEEE--EeCCCcceeEEEEeeEEecCCCC
Confidence 788999999999985 688999999999988542 2 2333 57888888 79999999999999
Q ss_pred CCCC-------ccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceE
Q 012122 156 HPDM-------KRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFV 228 (470)
Q Consensus 156 ~~~~-------~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~v 228 (470)
+|+| ++.++||+|++++++| ++++++. ..+++|.+.+ .+ |
T Consensus 198 ~~~~~~~~~~~~~~~~n~~Ili~d~~l-------------~~~~~l~-----------~~l~~i~~~~--------~~-l 244 (520)
T cd03344 198 SPYFVTDPEKMEVELENPYILLTDKKI-------------SSIQELL-----------PILELVAKAG--------RP-L 244 (520)
T ss_pred CCccccCcccCeEEeeCCEEEEECCCC-------------CCHHHHH-----------HHHHHHHhhC--------CC-E
Confidence 8865 3678999999999987 3344433 3456665543 33 7
Q ss_pred EEecCCCCHHHHHHHHHcCc------EEEecC-----ChhhHHHHHHHhCCeecc-----cCCCCCCCCCcccceEEEEE
Q 012122 229 VINQKGIDPLSLDLLARAGI------IALRRA-----KRRNMERLVLACGGEAVN-----SVDDLTPGCLGWAGLVYEHV 292 (470)
Q Consensus 229 Ii~~~~i~~~~l~~l~~~~I------~~v~~v-----~~~~l~~i~~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ 292 (470)
++++++|++.++++|.++|| ++++++ ++++++|||.+|||++++ ++++++++++|+|+.|++.+
T Consensus 245 vi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~ 324 (520)
T cd03344 245 LIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK 324 (520)
T ss_pred EEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee
Confidence 77888999999999999999 998877 889999999999999999 78889888999999999544
Q ss_pred ECCeeEEEEEccCCC-----------------------------------CeeEEEeeCCCHHHHHHHHHHHHhHHHHHH
Q 012122 293 LGEEKYTFVENVKNP-----------------------------------HSCTILIKGPNDHTIAQIKDAVRDGLRAVK 337 (470)
Q Consensus 293 ig~~~~~~~~~~~~~-----------------------------------~~~TIii~g~t~~~l~e~~~~l~dal~~~~ 337 (470)
++|+++.+++++ +.+||+|||+|+.+++|++|+++||+++++
T Consensus 325 ---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k 401 (520)
T cd03344 325 ---DDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATR 401 (520)
T ss_pred ---ceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHH
Confidence 788999887664 599999999999999999999999999999
Q ss_pred HHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCCHHHHHHHHHHhccCCCeeeE
Q 012122 338 NTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGL 417 (470)
Q Consensus 338 ~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d~~~~i~~l~~~~~~~~~~gi 417 (470)
+++++| +|||||++|++++.+| ++++. .++++|+++++|++||+.||++|++|||+|+.+++.+|+..|. ++|+
T Consensus 402 ~a~~~g-~VpGGGa~e~~~s~~L-~~~~~-~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~---~~G~ 475 (520)
T cd03344 402 AAVEEG-IVPGGGVALLRASPAL-DKLKA-LNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD---GFGY 475 (520)
T ss_pred HHHhcC-CCcCCcHHHHHHHHHH-HHhcc-CChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC---CEeE
Confidence 999997 9999999999999999 88887 8999999999999999999999999999999999999998774 7999
Q ss_pred EccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhh
Q 012122 418 NQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIR 461 (470)
Q Consensus 418 d~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~ 461 (470)
|+.+|++.||.+.|||||+.+|.++++.|+++|++||+||.+|.
T Consensus 476 d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~id~~i~ 519 (520)
T cd03344 476 DAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVV 519 (520)
T ss_pred ECCCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence 99999999999999999999999999999999999999999875
No 34
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7.9e-75 Score=609.76 Aligned_cols=405 Identities=21% Similarity=0.347 Sum_probs=363.8
Q ss_pred CcccCh----HHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCccc
Q 012122 1 MQIQNP----TAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVV 76 (470)
Q Consensus 1 ~~~~hP----~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~ 76 (470)
|+++|| +|+|++++|++||+++||||||+|+|+++||+++.+|+++|+||..|++||+.|++.++++|+++++|++
T Consensus 60 i~~~hp~~~~~akll~~~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~ 139 (541)
T PRK12851 60 IELEDKFENMGAQMVREVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVT 139 (541)
T ss_pred ccCCCchhhHHHHHHHHHHHhhhHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 678999 9999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCCcEEEEeEEEecCCCC
Q 012122 77 MGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRH 156 (470)
Q Consensus 77 ~~~~~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~ 156 (470)
+.+.+.++++++++ +.+.|++++++|+..+.+. + .+++.+.. ++..++++++|++|++++.+
T Consensus 140 -----~~~~l~~va~~s~~------~~~~l~~lv~~Av~~vg~~-g-----~i~i~~~~-~~~~~~~~~~G~~~~~g~~~ 201 (541)
T PRK12851 140 -----TNAEIAQVATISAN------GDAEIGRLVAEAMEKVGNE-G-----VITVEESK-TAETELEVVEGMQFDRGYLS 201 (541)
T ss_pred -----CHHHHHHHHHHhcc------ChHHHHHHHHHHHHHhccc-C-----ceEEEEcc-CCCcceEEEEEEEecCCccc
Confidence 67789999988763 5789999999999988542 2 24555544 66788999999999999999
Q ss_pred CC-------CccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEE
Q 012122 157 PD-------MKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVV 229 (470)
Q Consensus 157 ~~-------~~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vI 229 (470)
|+ |++.++||+|+++|++++ +.+ .+...+++|.+.+ .| +|
T Consensus 202 ~~~~~~~~~~~~~~~~~~Ilv~d~~i~-------------~~~-----------~i~~~l~~i~~~~--------~~-lv 248 (541)
T PRK12851 202 PYFVTDADKMEAELEDPYILIHEKKIS-------------NLQ-----------DLLPVLEAVVQSG--------KP-LL 248 (541)
T ss_pred cccccCCCCCeEEecccEEEEEcCCcC-------------cHH-----------HHHHHHHHHHHhC--------cC-EE
Confidence 85 899999999999999863 111 1445677776543 33 67
Q ss_pred EecCCCCHHHHHHHHHcCc------EEEec-----CChhhHHHHHHHhCCeecc-----cCCCCCCCCCcccceEEEEEE
Q 012122 230 INQKGIDPLSLDLLARAGI------IALRR-----AKRRNMERLVLACGGEAVN-----SVDDLTPGCLGWAGLVYEHVL 293 (470)
Q Consensus 230 i~~~~i~~~~l~~l~~~~I------~~v~~-----v~~~~l~~i~~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~i 293 (470)
|++++|++.++++|..++| +++++ +++++|+|||.+|||++++ +++++++.++|+|+.|++.+
T Consensus 249 i~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~- 327 (541)
T PRK12851 249 IIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK- 327 (541)
T ss_pred EECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc-
Confidence 7788999999999999997 88887 8999999999999999999 68888888999999998544
Q ss_pred CCeeEEEEEccCCCC-----------------------------------eeEEEeeCCCHHHHHHHHHHHHhHHHHHHH
Q 012122 294 GEEKYTFVENVKNPH-----------------------------------SCTILIKGPNDHTIAQIKDAVRDGLRAVKN 338 (470)
Q Consensus 294 g~~~~~~~~~~~~~~-----------------------------------~~TIii~g~t~~~l~e~~~~l~dal~~~~~ 338 (470)
++|+++.++++++ .+||+|||+|+.+++|++|+++||++++++
T Consensus 328 --~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~ 405 (541)
T PRK12851 328 --ENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRA 405 (541)
T ss_pred --ceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8889998877643 789999999999999999999999999999
Q ss_pred HhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCCHHHHHHHHHHhccCCCeeeEE
Q 012122 339 TIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLN 418 (470)
Q Consensus 339 ~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d~~~~i~~l~~~~~~~~~~gid 418 (470)
++++| +|||||++|++++.+| ++++.. ++++|+++++|++||+.||++|++|||+|+.+++.+|++.| .++|+|
T Consensus 406 al~~g-~VpGGGa~e~~~s~~L-~~~~~~-~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~---~~~G~d 479 (541)
T PRK12851 406 AVEEG-IVPGGGVALLRAVKAL-DKLETA-NGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKP---GGYGFN 479 (541)
T ss_pred HHHcC-cccCchHHHHHHHHHH-HHHhcC-CcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC---CCeeee
Confidence 99997 9999999999999999 888876 88999999999999999999999999999999999998876 379999
Q ss_pred ccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCcC
Q 012122 419 QHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRN 465 (470)
Q Consensus 419 ~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~~ 465 (470)
+.+|+++||++.|||||+.+|.++|+.|+|+|++||+||++|..+|.
T Consensus 480 ~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id~iI~~~~~ 526 (541)
T PRK12851 480 AATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKPK 526 (541)
T ss_pred CCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhHHHhhhcCCC
Confidence 99999999999999999999999999999999999999999998875
No 35
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7.6e-75 Score=610.24 Aligned_cols=406 Identities=21% Similarity=0.355 Sum_probs=362.6
Q ss_pred CcccChH----HHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCccc
Q 012122 1 MQIQNPT----AIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVV 76 (470)
Q Consensus 1 ~~~~hP~----a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~ 76 (470)
|+++||+ ++|++++|++||+++||||||+|+|+++||+++.+|+++|+||..|++||+.|++.++++|++++++++
T Consensus 60 i~i~hp~~~~ga~ll~~~a~~qd~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~ 139 (544)
T PRK12850 60 IELEDKFENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVT 139 (544)
T ss_pred hcCCChhhhHHHHHHHHHHhhhcchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 6789999 999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCCCCcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCCcEEEEeEEEecCCCC
Q 012122 77 MGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRH 156 (470)
Q Consensus 77 ~~~~~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~ 156 (470)
+.+.|.+++++++++ .+.++++++||+..+.+. +.++++.+ +..| .++++++|++|++++.+
T Consensus 140 -----~~~~l~~va~~s~~~------~~~l~~lv~eAv~~vg~~-g~i~v~~~---~~~g---~~~~~v~G~~~~~g~~~ 201 (544)
T PRK12850 140 -----SSKEIAQVATISANG------DESIGEMIAEAMDKVGKE-GVITVEEA---KTLG---TELDVVEGMQFDRGYLS 201 (544)
T ss_pred -----CHHHHHHHHHHhcCC------HHHHHHHHHHHHHHhccc-CceeeEEc---cccC---cceEEEEeEEecCccCc
Confidence 678899999998765 588999999999998643 33444332 2233 68999999999999999
Q ss_pred CCC-------ccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEE
Q 012122 157 PDM-------KRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVV 229 (470)
Q Consensus 157 ~~~-------~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vI 229 (470)
|+| ++.++||+|+++|+.++ +.+ .+...++++.+.+ .+ +|
T Consensus 202 p~~~~~~~~~~~~~~n~~Ill~d~~i~-------------~~~-----------~i~~~l~~i~~~g--------~~-lv 248 (544)
T PRK12850 202 PYFVTNPEKMRAELEDPYILLHEKKIS-------------NLQ-----------DLLPILEAVVQSG--------RP-LL 248 (544)
T ss_pred CccccccccCeEEEeCCEEEEEecccC-------------CHH-----------HHHHHHHHHHHhC--------CC-EE
Confidence 865 78899999999999652 122 2445677776543 34 66
Q ss_pred EecCCCCHHHHHHHHHcCc------EEEec-----CChhhHHHHHHHhCCeecc-----cCCCCCCCCCcccceEEEEEE
Q 012122 230 INQKGIDPLSLDLLARAGI------IALRR-----AKRRNMERLVLACGGEAVN-----SVDDLTPGCLGWAGLVYEHVL 293 (470)
Q Consensus 230 i~~~~i~~~~l~~l~~~~I------~~v~~-----v~~~~l~~i~~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~i 293 (470)
+++++|+|.++++|..++| +++++ +++++|+|||.+|||++++ ++++++++++|+|+.|++.
T Consensus 249 I~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~-- 326 (544)
T PRK12850 249 IIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLIT-- 326 (544)
T ss_pred EECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEE--
Confidence 7788999999999999999 99998 7899999999999999999 6888998899999999854
Q ss_pred CCeeEEEEEccCCCC-----------------------------------eeEEEeeCCCHHHHHHHHHHHHhHHHHHHH
Q 012122 294 GEEKYTFVENVKNPH-----------------------------------SCTILIKGPNDHTIAQIKDAVRDGLRAVKN 338 (470)
Q Consensus 294 g~~~~~~~~~~~~~~-----------------------------------~~TIii~g~t~~~l~e~~~~l~dal~~~~~ 338 (470)
.++|++++++++++ .+||+|||+|+.+++|++|+++||++++++
T Consensus 327 -~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~ 405 (544)
T PRK12850 327 -KENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRA 405 (544)
T ss_pred -eeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHH
Confidence 47899998887643 899999999999999999999999999999
Q ss_pred HhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCCHHHHHHHHHHhccCCCeeeEE
Q 012122 339 TIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLN 418 (470)
Q Consensus 339 ~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d~~~~i~~l~~~~~~~~~~gid 418 (470)
++++| +|||||++|++++.+| +++ ...++++|+++++|++||+.||++|++|||+|+.+++.+|+..| .++|+|
T Consensus 406 a~~~g-~VpGGGa~e~~~s~~L-~~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~---~~~G~d 479 (544)
T PRK12850 406 AVEEG-IVPGGGVALLRARSAL-RGL-KGANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELP---GNFGFN 479 (544)
T ss_pred HHhcC-CccCCcHHHHHHHHHH-Hhc-cCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC---CCccee
Confidence 99997 9999999999999999 887 66788999999999999999999999999999999999998876 368999
Q ss_pred ccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCcCC
Q 012122 419 QHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNM 466 (470)
Q Consensus 419 ~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~~~ 466 (470)
..+|++.||.+.|||||+.+|.++|++|+++|++|||||++|..+|.+
T Consensus 480 ~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~ 527 (544)
T PRK12850 480 AQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEAPKK 527 (544)
T ss_pred CCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhHHHhhccCCCC
Confidence 999999999999999999999999999999999999999999988754
No 36
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.4e-74 Score=606.74 Aligned_cols=403 Identities=21% Similarity=0.345 Sum_probs=360.0
Q ss_pred cChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCCCcH
Q 012122 4 QNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDK 83 (470)
Q Consensus 4 ~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~~~~ 83 (470)
+||+|+|+++++++||+++||||||+|+||++||+++.+|+++|+||..|++||+.|++.+++.|+++++|++ +.
T Consensus 67 ~~p~akll~e~a~~q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~-----~~ 141 (545)
T PRK12852 67 ENMGAQMVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVA-----SS 141 (545)
T ss_pred cChHHHHHHHHHhhcCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC-----CH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999986 45
Q ss_pred HHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCc-CCcEEEEeEEEecCCCCCC----
Q 012122 84 EILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFD-VDTRLVEGLVLDHGSRHPD---- 158 (470)
Q Consensus 84 ~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~-~~s~li~G~vl~~~~~~~~---- 158 (470)
+.+.++++++.++ .+.+++++++|+.++.+. +.++++ .|+.. .++++++|+.|+++|.+|+
T Consensus 142 ~~l~~va~~s~~~------~~~l~~li~eA~~~vg~~-g~i~v~-------~g~~~~~~~~~v~G~~~~~g~~~p~~v~~ 207 (545)
T PRK12852 142 AEIAQVGTISANG------DAAIGKMIAQAMQKVGNE-GVITVE-------ENKSLETEVDIVEGMKFDRGYLSPYFVTN 207 (545)
T ss_pred HHHHHHHhhhcCC------hHHHHHHHHHHHHHhccC-Cceeee-------cCCCcceEEEEEEeEEecCCccCCccccc
Confidence 6799999988865 578999999999998653 334433 26664 7999999999999999985
Q ss_pred ---CccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCC
Q 012122 159 ---MKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGI 235 (470)
Q Consensus 159 ---~~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i 235 (470)
|+..++||+|+++++.++ +++ .+...++.+.+.+ .| ++|++++|
T Consensus 208 ~~~~~~~l~n~~Ili~d~~i~-------------~~~-----------~i~~~l~~i~~~g--------~~-lvI~~~~i 254 (545)
T PRK12852 208 AEKMTVELDDAYILLHEKKLS-------------GLQ-----------AMLPVLEAVVQSG--------KP-LLIIAEDV 254 (545)
T ss_pred cccceEEecCceEEEecCccC-------------CHH-----------HHHHHHHHHHHhC--------cC-EEEECCCC
Confidence 788999999999998652 222 3335567776543 34 66667899
Q ss_pred CHHHHHHHHHc------CcEEEecCC-----hhhHHHHHHHhCCeecc-----cCCCCCCCCCcccceEEEEEECCeeEE
Q 012122 236 DPLSLDLLARA------GIIALRRAK-----RRNMERLVLACGGEAVN-----SVDDLTPGCLGWAGLVYEHVLGEEKYT 299 (470)
Q Consensus 236 ~~~~l~~l~~~------~I~~v~~v~-----~~~l~~i~~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~ 299 (470)
++.++++|..| +|+++++++ +++|+|||.+|||++++ ++++++++++|+|+.+++.. ++++
T Consensus 255 ~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~---~~~~ 331 (545)
T PRK12852 255 EGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK---ENTT 331 (545)
T ss_pred cHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc---cEEE
Confidence 99999999987 799999876 89999999999999999 68899989999999998544 7888
Q ss_pred EEEccCCC-----------------------------------CeeEEEeeCCCHHHHHHHHHHHHhHHHHHHHHhhcCc
Q 012122 300 FVENVKNP-----------------------------------HSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEA 344 (470)
Q Consensus 300 ~~~~~~~~-----------------------------------~~~TIii~g~t~~~l~e~~~~l~dal~~~~~~~~~~~ 344 (470)
++.++..+ +.+||+|||+|+.+++|++|+++||++++++++++|
T Consensus 332 ~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g- 410 (545)
T PRK12852 332 IVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG- 410 (545)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 99887653 789999999999999999999999999999999997
Q ss_pred cccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCCHHHHHHHHHHhccCCCeeeEEccCCCc
Q 012122 345 VVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQHSGDP 424 (470)
Q Consensus 345 vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d~~~~i~~l~~~~~~~~~~gid~~~~~~ 424 (470)
+|||||++|++++.+| ++++.. ++++|+++++|++||+.||++|++|||+|+.+++.+|++.| ++++|+|+.+|++
T Consensus 411 ~VpGGGa~e~~~s~~L-~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~--~~~~G~d~~~g~~ 486 (545)
T PRK12852 411 IVPGGGVALLRAKKAV-GRINND-NADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENK--SETFGFDAQTEEY 486 (545)
T ss_pred CCcCchHHHHHHHHHH-HHhhcC-CcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc--CCCeeEeCcCCCc
Confidence 9999999999999999 888876 78899999999999999999999999999999999998877 4679999999999
Q ss_pred cCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCcCC
Q 012122 425 IDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNM 466 (470)
Q Consensus 425 ~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~~~ 466 (470)
.||.+.|||||+.+|.++|+.|+|+|++||+||++|..+|..
T Consensus 487 ~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~ 528 (545)
T PRK12852 487 VDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKK 528 (545)
T ss_pred ccHHhCcCCcChHHHHHHHHHHHHHHHHHHhHHHHhhcCCCC
Confidence 999999999999999999999999999999999999987753
No 37
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=1.1e-73 Score=600.22 Aligned_cols=403 Identities=23% Similarity=0.344 Sum_probs=358.4
Q ss_pred CcccCh----HHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCccc
Q 012122 1 MQIQNP----TAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVV 76 (470)
Q Consensus 1 ~~~~hP----~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~ 76 (470)
|+++|| +++|+++++++||+++||||||+|+|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++
T Consensus 58 i~~~hp~~~~~akll~~~a~~qd~e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~ 137 (524)
T TIGR02348 58 IELEDKFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVK 137 (524)
T ss_pred ccCCChhhHHHHHHHHHHHHccCceeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 678999 9999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCc-CCcEEEEeEEEecCCC
Q 012122 77 MGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFD-VDTRLVEGLVLDHGSR 155 (470)
Q Consensus 77 ~~~~~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~-~~s~li~G~vl~~~~~ 155 (470)
+.+.+.++++|+.+ ..+.+++++++|+..+.+. +. |.+.. |+.. ++|++++|++|++++.
T Consensus 138 -----~~~~l~~va~ts~~------~~~~l~~lv~~A~~~v~~~-~~-----i~v~~--g~~~~~~s~~v~G~~~~~g~~ 198 (524)
T TIGR02348 138 -----GKKEIAQVATISAN------NDEEIGSLIAEAMEKVGKD-GV-----ITVEE--SKSLETELEVVEGMQFDRGYI 198 (524)
T ss_pred -----CHHHHHHHHHHhcc------ChHHHHHHHHHHHHHhCcC-Cc-----Eeeec--CCCccccEEEEEeEEEcCCCC
Confidence 67889999999875 3788999999999988643 22 33332 5555 7899999999999999
Q ss_pred CCCC-------ccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceE
Q 012122 156 HPDM-------KRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFV 228 (470)
Q Consensus 156 ~~~~-------~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~v 228 (470)
+|+| ++.++||+|++++++++ +++++ ...++++.+.+ .| +
T Consensus 199 ~~~~~~~~~~~~~~~~n~~Ili~d~~i~-------------~~~~i-----------~~~l~~i~~~g--------~~-l 245 (524)
T TIGR02348 199 SPYFVTDAEKMEVELENPYILITDKKIS-------------NIKDL-----------LPLLEKVAQSG--------KP-L 245 (524)
T ss_pred CcccccCccCCeEEeeCceeeeccCCcC-------------CHHHH-----------HHHHHHHHHhC--------cC-E
Confidence 9875 78899999999999763 33333 35567676543 34 7
Q ss_pred EEecCCCCHHHHHHHHHc------CcEEEecCCh-----hhHHHHHHHhCCeecc-----cCCCCCCCCCcccceEEEEE
Q 012122 229 VINQKGIDPLSLDLLARA------GIIALRRAKR-----RNMERLVLACGGEAVN-----SVDDLTPGCLGWAGLVYEHV 292 (470)
Q Consensus 229 Ii~~~~i~~~~l~~l~~~------~I~~v~~v~~-----~~l~~i~~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ 292 (470)
|+++++|+|.++++|..+ +|++++++++ ++++|||.+|||++++ ++++++++++|+|+.|++.
T Consensus 246 vi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~- 324 (524)
T TIGR02348 246 LIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVD- 324 (524)
T ss_pred EEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEe-
Confidence 777889999999999997 8899998854 7999999999999999 8999999999999999854
Q ss_pred ECCeeEEEEEccCCCC-----------------------------------eeEEEeeCCCHHHHHHHHHHHHhHHHHHH
Q 012122 293 LGEEKYTFVENVKNPH-----------------------------------SCTILIKGPNDHTIAQIKDAVRDGLRAVK 337 (470)
Q Consensus 293 ig~~~~~~~~~~~~~~-----------------------------------~~TIii~g~t~~~l~e~~~~l~dal~~~~ 337 (470)
.++|+++.++.+++ .+||+|||+|+.+++|++|+++||++++|
T Consensus 325 --~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r 402 (524)
T TIGR02348 325 --KDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATR 402 (524)
T ss_pred --ecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 47889998876554 68999999999999999999999999999
Q ss_pred HHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCCHHHHHHHHHHhccCCCeeeE
Q 012122 338 NTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGL 417 (470)
Q Consensus 338 ~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d~~~~i~~l~~~~~~~~~~gi 417 (470)
+++++| +|||||++|++++.+| ++ +.+.++++|+++++|++||+.||++|++|||+|+.+++.+|+.. .+ ++|+
T Consensus 403 ~a~~~g-~VpGGGa~e~~~s~~L-~~-~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~--~~-~~G~ 476 (524)
T TIGR02348 403 AAVEEG-IVPGGGVALLRAAAAL-EG-LKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKES--KG-NFGF 476 (524)
T ss_pred HHHhcC-CccCCcHHHHHHHHHH-HH-hccCChHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc--CC-CeeE
Confidence 999998 9999999999999999 77 66778899999999999999999999999999999999999865 23 4899
Q ss_pred EccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCc
Q 012122 418 NQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGR 464 (470)
Q Consensus 418 d~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~ 464 (470)
|+.+|++.||++.|||||+.+|.++|++|+++|++||+||++|...|
T Consensus 477 d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~ii~~~~ 523 (524)
T TIGR02348 477 NAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVADKP 523 (524)
T ss_pred eCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhcCC
Confidence 99999999999999999999999999999999999999999997643
No 38
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=2.8e-72 Score=590.40 Aligned_cols=404 Identities=21% Similarity=0.342 Sum_probs=357.7
Q ss_pred ccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCCCc
Q 012122 3 IQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPD 82 (470)
Q Consensus 3 ~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~~~ 82 (470)
++||+++|+++++++||+++||||||+|+||++||+++.+++++|+||+.|++||++|.+.+++.|+++++|++ +
T Consensus 66 ~~~pgakll~e~a~~qd~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~-----~ 140 (546)
T PRK14104 66 FENMGAQMVREVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVT-----S 140 (546)
T ss_pred ccChHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCC-----C
Confidence 44999999999999999999999999999999999999999999999999999999999999999999999986 4
Q ss_pred HHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCCcEEEEeEEEecCCCCCCC---
Q 012122 83 KEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDM--- 159 (470)
Q Consensus 83 ~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~~--- 159 (470)
.+.+.++++++.+++ +.+++++++|+..+.+. +.++++.+ +...+++++++|++|+++|.+|+|
T Consensus 141 ~~~l~~va~~s~~~d------~~i~~lv~~Av~~vg~~-g~i~v~~~------~~~~~~~~~~~G~~~~~g~~~p~~~~~ 207 (546)
T PRK14104 141 NDEIAQVGTISANGD------AEIGKFLADAMKKVGNE-GVITVEEA------KSLETELDVVEGMQFDRGYISPYFVTN 207 (546)
T ss_pred HHHHHHHHHHHhcCc------hHHHHHHHHHHHHhccC-CceeeEec------ccccceEEEEEEEEEeCCCCCcchhcC
Confidence 567999999988765 66999999999988643 33444322 233368999999999999999865
Q ss_pred ----ccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCC
Q 012122 160 ----KRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGI 235 (470)
Q Consensus 160 ----~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i 235 (470)
+.++++|+|++++..+ +++++ +...++.+.+.+ .| |||++++|
T Consensus 208 ~~~~~~~~~~~~Ilv~d~~i-------------~~~~~-----------i~~~l~~i~~~g--------~~-lvI~~~~i 254 (546)
T PRK14104 208 ADKMRVEMDDAYILINEKKL-------------SSLNE-----------LLPLLEAVVQTG--------KP-LVIVAEDV 254 (546)
T ss_pred cccCceeeeCcEEEEehhhh-------------cCHHH-----------HHHHHHHHHHhC--------cC-EEEECCCC
Confidence 6778999999998544 33333 335577776654 34 77888899
Q ss_pred CHHHHHHHHH------cCcEEEecCC-----hhhHHHHHHHhCCeeccc-----CCCCCCCCCcccceEEEEEECCeeEE
Q 012122 236 DPLSLDLLAR------AGIIALRRAK-----RRNMERLVLACGGEAVNS-----VDDLTPGCLGWAGLVYEHVLGEEKYT 299 (470)
Q Consensus 236 ~~~~l~~l~~------~~I~~v~~v~-----~~~l~~i~~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~ig~~~~~ 299 (470)
++.|+++|.. .+|+++++++ +++|+|||.+|||+++++ ++++++.++|+|..++ +++++++
T Consensus 255 ~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~---~~~~~~~ 331 (546)
T PRK14104 255 EGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVM---IDKENTT 331 (546)
T ss_pred cHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEE---EcCCEEE
Confidence 9999999995 4689998886 799999999999999999 8899989999999998 6888999
Q ss_pred EEEccCCC-----------------------------------CeeEEEeeCCCHHHHHHHHHHHHhHHHHHHHHhhcCc
Q 012122 300 FVENVKNP-----------------------------------HSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEA 344 (470)
Q Consensus 300 ~~~~~~~~-----------------------------------~~~TIii~g~t~~~l~e~~~~l~dal~~~~~~~~~~~ 344 (470)
++.+++++ +.+||+|||+|+.+++|++|+++||++++++++++|
T Consensus 332 ~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g- 410 (546)
T PRK14104 332 IVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG- 410 (546)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 99988775 899999999999999999999999999999999998
Q ss_pred cccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCCHHHHHHHHHHhccCCCeeeEEccCCCc
Q 012122 345 VVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQHSGDP 424 (470)
Q Consensus 345 vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d~~~~i~~l~~~~~~~~~~gid~~~~~~ 424 (470)
+|||||++|++++.+| +++.. .++++++++++|++||+.||++|++|||+|+.+++.+|+..| .+++|+|+.+|++
T Consensus 411 ~VpGGGa~e~~~s~~L-~~~~~-~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~--~~~~G~d~~~g~~ 486 (546)
T PRK14104 411 IVPGGGVALLRASEQL-KGIKT-KNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKE--QYSYGFDSQTGEY 486 (546)
T ss_pred cCcCchHHHHHHHHHH-HHhhc-CChHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcC--CCcEeEeCCCCce
Confidence 9999999999999999 77743 578999999999999999999999999999999999998754 4579999999999
Q ss_pred cCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCcC
Q 012122 425 IDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRN 465 (470)
Q Consensus 425 ~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~~ 465 (470)
.||.+.|||||+.+|.++|++|+++|++||+||++|...|.
T Consensus 487 ~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~id~~I~~~~~ 527 (546)
T PRK14104 487 GNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPK 527 (546)
T ss_pred eehHhcCCEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999987663
No 39
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=1.5e-72 Score=592.21 Aligned_cols=406 Identities=20% Similarity=0.337 Sum_probs=354.3
Q ss_pred CcccChHHH----HHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCccc
Q 012122 1 MQIQNPTAI----MIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVV 76 (470)
Q Consensus 1 ~~~~hP~a~----ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~ 76 (470)
|+++||+++ |+++++.+|++++||||||+|||+++||+++.+|+++|+||..|++||+.|.+.+++.|+++++|++
T Consensus 59 i~~~hp~a~~g~~li~~~a~~~~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~ 138 (529)
T CHL00093 59 IELEDHIENTGVALIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVE 138 (529)
T ss_pred ccCcCHHHHHHHHHHHHHHHhcCceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 678999995 8888999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCCcEEEEeEEEecCCCC
Q 012122 77 MGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRH 156 (470)
Q Consensus 77 ~~~~~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~ 156 (470)
+.+.|.++|+++++ +.+.|++++++|+..+.+. +.++++ -.+++..++++++|+.|+++|.+
T Consensus 139 -----d~~~L~~VA~ts~~------~~~~l~~lv~eAv~~vg~~-g~i~~~------~g~~~~~~~~~v~G~~~~~g~~~ 200 (529)
T CHL00093 139 -----DIQAITQVASISAG------NDEEVGSMIADAIEKVGRE-GVISLE------EGKSTVTELEITEGMRFEKGFIS 200 (529)
T ss_pred -----CHHHHHHHHHHhcc------ChHHHHHHHHHHHHHhccC-Cceeec------CCCccceeeEEEeeEEecCccCc
Confidence 77889999999876 5788999999999998642 233332 12345678899999999999999
Q ss_pred CCC---cc----ccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEE
Q 012122 157 PDM---KR----RAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVV 229 (470)
Q Consensus 157 ~~~---~~----~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vI 229 (470)
|+| ++ .++||+|++++++|++.+ ..+...++++.+.+ .| ++
T Consensus 201 p~fv~~~k~~~~~l~n~~Ili~d~~le~~~-----------------------~~i~~~l~~i~~~~--------~~-lv 248 (529)
T CHL00093 201 PYFVTDTERMEVVQENPYILLTDKKITLVQ-----------------------QDLLPILEQVTKTK--------RP-LL 248 (529)
T ss_pred CccccCCccceEEecCceehhhcCCCCchH-----------------------HHHHHHHHHHHhcC--------CC-EE
Confidence 865 43 489999999999998532 12345566665543 34 66
Q ss_pred EecCCCCHHHHHHH--HH----cCcEEEecCC-----hhhHHHHHHHhCCeecc-----cCCCCCCCCCcccceEEEEEE
Q 012122 230 INQKGIDPLSLDLL--AR----AGIIALRRAK-----RRNMERLVLACGGEAVN-----SVDDLTPGCLGWAGLVYEHVL 293 (470)
Q Consensus 230 i~~~~i~~~~l~~l--~~----~~I~~v~~v~-----~~~l~~i~~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~i 293 (470)
+++++|++.++++| ++ .+|+++++++ +++++|||.+|||++++ ++.++++.++|+|+.|++.
T Consensus 249 i~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~-- 326 (529)
T CHL00093 249 IIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVT-- 326 (529)
T ss_pred EEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEe--
Confidence 77779999777766 66 4899999984 48899999999999999 6899999999999999854
Q ss_pred CCeeEEEEEc---------cCCC-------------------------CeeEEEeeCCCHHHHHHHHHHHHhHHHHHHHH
Q 012122 294 GEEKYTFVEN---------VKNP-------------------------HSCTILIKGPNDHTIAQIKDAVRDGLRAVKNT 339 (470)
Q Consensus 294 g~~~~~~~~~---------~~~~-------------------------~~~TIii~g~t~~~l~e~~~~l~dal~~~~~~ 339 (470)
.++++++++ |... ..+||+|||+|+.+++|++|+++||+++++++
T Consensus 327 -~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a 405 (529)
T CHL00093 327 -KDSTTIIADGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAA 405 (529)
T ss_pred -cCEEEEEecCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 478888863 2221 37889999999999999999999999999999
Q ss_pred hhcCccccCCChHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHhHhHHHHHHhcCCCHHHHHHHHHHhccCCCeeeEE
Q 012122 340 IEDEAVVLGAGAFEVAARQYLVNEVKK-TVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLN 418 (470)
Q Consensus 340 ~~~~~vvpGGG~~E~~la~~L~~~~~~-~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d~~~~i~~l~~~~~~~~~~gid 418 (470)
+++| +|||||++|+++|.+| ++++. ..++++|+++++|++||+.||++|++|||+|+.+++.+++.. +.++|||
T Consensus 406 ~~~g-vVpGGGa~e~~~s~~L-~~~~~~~~~g~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~---~~~~G~d 480 (529)
T CHL00093 406 VEEG-IVPGGGATLVHLSENL-KTWAKNNLKEDELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ---DFEIGYN 480 (529)
T ss_pred HHcC-cccCCcHHHHHHHHHH-HHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc---CCCEeEE
Confidence 9997 9999999999999999 88876 688999999999999999999999999999999999999754 3579999
Q ss_pred ccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCc
Q 012122 419 QHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGR 464 (470)
Q Consensus 419 ~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~ 464 (470)
..+|+++||++.|||||+.+|.++|+.|+|+|++||+||++|...|
T Consensus 481 ~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~ii~~~~ 526 (529)
T CHL00093 481 AANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDKK 526 (529)
T ss_pred CCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999866
No 40
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=3.6e-71 Score=584.97 Aligned_cols=409 Identities=22% Similarity=0.352 Sum_probs=356.5
Q ss_pred CcccCh----HHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCccc
Q 012122 1 MQIQNP----TAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVV 76 (470)
Q Consensus 1 ~~~~hP----~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~ 76 (470)
|+++|| +|+|++++|++|++++||||||++||+++||+++.+++.+|+||..|++||+.|.+.+++.|++++.|++
T Consensus 115 i~~~hP~~~~gakll~~~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~ 194 (600)
T PLN03167 115 VELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVE 194 (600)
T ss_pred cccCCchhhHHHHHHHHHHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 678999 5999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred CCCCCcHHHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCCc-EEEEeEEEecCCC
Q 012122 77 MGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDT-RLVEGLVLDHGSR 155 (470)
Q Consensus 77 ~~~~~~~~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~s-~li~G~vl~~~~~ 155 (470)
+ +.|.++|.+++++ .+.|+++++||+.++.+. +.++++ .|++..++ ++++|++|+++|.
T Consensus 195 -----d-~~L~~vA~tS~~~------~~~i~~liaeAv~~Vg~~-g~i~v~-------~g~s~~dsl~~v~G~~~d~g~~ 254 (600)
T PLN03167 195 -----D-SELADVAAVSAGN------NYEVGNMIAEAMSKVGRK-GVVTLE-------EGKSAENNLYVVEGMQFDRGYI 254 (600)
T ss_pred -----H-HHHHHHHHHhccC------cHHHHHHHHHHHHHhccC-CcEEec-------cCCCccceeEEEEEEEecCCcc
Confidence 4 5799999999874 457999999999998642 223322 58888887 8999999999999
Q ss_pred CC-------CCccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceE
Q 012122 156 HP-------DMKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFV 228 (470)
Q Consensus 156 ~~-------~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~v 228 (470)
+| .|+++++||+|+++++.+ ++++|+..++ +++.+. +.| +
T Consensus 255 spyfvt~~~~m~~~l~np~Ill~d~~i-------------~~~~~l~~~l-----------e~i~~~--------g~~-l 301 (600)
T PLN03167 255 SPYFVTDSEKMSVEYDNCKLLLVDKKI-------------TNARDLIGIL-----------EDAIRG--------GYP-L 301 (600)
T ss_pred CcccccCcCCCeEEEeCCEEEEEcccc-------------CCHHHHHHHH-----------HHHHHh--------CcC-E
Confidence 98 688999999999999855 4555555543 344332 234 6
Q ss_pred EEecCCCCHHHHHHHH------HcCcEEEecCC-----hhhHHHHHHHhCCeecc-----cCCCCCCCCCcccceEEEEE
Q 012122 229 VINQKGIDPLSLDLLA------RAGIIALRRAK-----RRNMERLVLACGGEAVN-----SVDDLTPGCLGWAGLVYEHV 292 (470)
Q Consensus 229 Ii~~~~i~~~~l~~l~------~~~I~~v~~v~-----~~~l~~i~~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ 292 (470)
+++.++|++.++++|. ..+|+++++++ +++|+|||.+|||++++ ++++++++++|+|+.|++.+
T Consensus 302 vI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~ 381 (600)
T PLN03167 302 LIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTK 381 (600)
T ss_pred EEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEec
Confidence 6667799999999999 66799999985 88999999999999999 68888888999999999876
Q ss_pred -----ECC--------eeEEEEEccC------------------CCCeeEEE-eeCCCHHHHHHHHHHHHhHHHHHHHHh
Q 012122 293 -----LGE--------EKYTFVENVK------------------NPHSCTIL-IKGPNDHTIAQIKDAVRDGLRAVKNTI 340 (470)
Q Consensus 293 -----ig~--------~~~~~~~~~~------------------~~~~~TIi-i~g~t~~~l~e~~~~l~dal~~~~~~~ 340 (470)
+|+ +++.+|+++. .+..+|++ |||+|+.+++|++|+++||++++|+++
T Consensus 382 ~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai 461 (600)
T PLN03167 382 DTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAV 461 (600)
T ss_pred ccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 3666666543 12245665 999999999999999999999999999
Q ss_pred hcCccccCCChHHHHHHHHHHHHHhccccchhHH-HHHHHHHHHhHhHHHHHHhcCCCHHHHHHHHHHhccCCCeeeEEc
Q 012122 341 EDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQL-GVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQ 419 (470)
Q Consensus 341 ~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~-~i~~fa~aL~~ip~~L~~NaG~d~~~~i~~l~~~~~~~~~~gid~ 419 (470)
++| +|||||++|++++.+| ++++...++++|+ ++++|++||+.||++|++|||+|+.+++.+|+..+ +.++|||+
T Consensus 462 ~~g-vVpGGGa~el~ls~~L-~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~~--~~~~G~d~ 537 (600)
T PLN03167 462 EEG-IVVGGGCTLLRLASKV-DAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSND--NPKFGYNA 537 (600)
T ss_pred hcC-CCccHHHHHHHHHHHH-HHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhcC--CCCEeEeC
Confidence 999 9999999999999999 8888777777775 59999999999999999999999999999997543 56899999
Q ss_pred cCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCcCC
Q 012122 420 HSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNM 466 (470)
Q Consensus 420 ~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~~~ 466 (470)
.+|++.||++.|||||+.+|+++|+.|+++|++||+||++|...+..
T Consensus 538 ~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~iI~~~~~~ 584 (600)
T PLN03167 538 ATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIKEP 584 (600)
T ss_pred CCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999999999999999987544
No 41
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-59 Score=437.46 Aligned_cols=324 Identities=30% Similarity=0.479 Sum_probs=302.1
Q ss_pred cChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCCCcH
Q 012122 4 QNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDK 83 (470)
Q Consensus 4 ~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~~~~ 83 (470)
+|++++++...+++|+.++|||||.+++|++.+++++.+++.+|+||..|.+||..+.+.+++.|++.+-+++
T Consensus 71 d~~IakLmv~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e------- 143 (400)
T KOG0357|consen 71 VHQIAKLIVILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE------- 143 (400)
T ss_pred chHHHHHHHHhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc-------
Confidence 5899999999999999999999999999999999999999999999999999999999999988888765541
Q ss_pred HHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCCcEEEEeEEEecCCCCCCCcccc
Q 012122 84 EILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRA 163 (470)
Q Consensus 84 ~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~~~~~~ 163 (470)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCCCHHHHHHH
Q 012122 164 ENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSLDLL 243 (470)
Q Consensus 164 ~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i~~~~l~~l 243 (470)
+..+++++.+.+ +++++|||++||+|.|+|
T Consensus 144 -----------------------------------------f~emi~~vK~~g---------a~l~icqwgfddeanhll 173 (400)
T KOG0357|consen 144 -----------------------------------------FEEMIQQIKETG---------ANLAICQWGFDDEANHLL 173 (400)
T ss_pred -----------------------------------------HHHHHHHHHhhC---------CcEEEEecccCchhhhHH
Confidence 114466664433 369999999999999999
Q ss_pred HHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcccceEEEEEEC--CeeEEEEEccCCCCeeEEEeeCCCHHH
Q 012122 244 ARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLG--EEKYTFVENVKNPHSCTILIKGPNDHT 321 (470)
Q Consensus 244 ~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig--~~~~~~~~~~~~~~~~TIii~g~t~~~ 321 (470)
.+|+..++|||.-.++|.||.+||++|+++|++|+++++|+++.|++..+| +++++.+++|+|++.+||.+||.++-+
T Consensus 174 ~~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~nskaVTifvRg~Nkmi 253 (400)
T KOG0357|consen 174 LQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNSKAVTIFVRGGNKMI 253 (400)
T ss_pred hhcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhhccccceEEEEecccccceEEEEEecCCCceEEEEEecCccee
Confidence 999999999999999999999999999999999999999999999999987 478999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCCHHHH
Q 012122 322 IAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDV 401 (470)
Q Consensus 322 l~e~~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d~~~~ 401 (470)
++|.+|++|||||++|++++|.++|+|||++|+.||-.+ .+-+.++++.+|+++.+||+||++||..|++|+|++|++.
T Consensus 254 i~EakrslhdalCvirnlird~rivYgGGaaEiscslav-~~ead~~~g~eqya~rafa~ale~ipmalaensgl~pi~~ 332 (400)
T KOG0357|consen 254 IEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAV-SQEADKIPGIEQYAFRAFADALESIPMALAENSGLDPIET 332 (400)
T ss_pred HHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHh-hHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCchhh
Confidence 999999999999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred HHHHHHhc--cCCCeeeEEccCCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCcC
Q 012122 402 IIALKGEH--DRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRN 465 (470)
Q Consensus 402 i~~l~~~~--~~~~~~gid~~~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~~ 465 (470)
++++++.+ +.++++|+|+.-..-.||.+.+++||+..|++.+..|++++.|+|+||+++.....
T Consensus 333 ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~~~~ 398 (400)
T KOG0357|consen 333 LSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKIDDVRKPGES 398 (400)
T ss_pred hhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhccceecCCCC
Confidence 99998877 35678999998777799999999999999999999999999999999999887643
No 42
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-45 Score=366.06 Aligned_cols=401 Identities=22% Similarity=0.342 Sum_probs=332.6
Q ss_pred cccChHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhhccCcccCCCCC
Q 012122 2 QIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEP 81 (470)
Q Consensus 2 ~~~hP~a~ll~~~~~~~~~~~GDGTtt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~s~~~~~~~~~ 81 (470)
+++|.+|+++++.+.+.++..||||||.++|+.++..++.+-+.+|.+|.++.+|.+.|.+...+.|.+++++++
T Consensus 78 ~~~n~gaklvq~va~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vt----- 152 (550)
T KOG0356|consen 78 KYENIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVT----- 152 (550)
T ss_pred hhhhhccHHHHHHHhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCC-----
Confidence 367889999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cHHHHHHHHhHhcccc--ccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCCcEEEEeEEEecCCCCCCC
Q 012122 82 DKEILKMVARTTLRTK--LYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDM 159 (470)
Q Consensus 82 ~~~~l~~va~tsl~sk--~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~~ 159 (470)
..+.+.++|.+|.++. +++.+.+.+.+++-++++.+.+++ ...++-++++||.|+++|.+|++
T Consensus 153 t~eeIaqVAtiSAngD~~ig~li~~a~~kvG~~GVItv~~gk---------------t~~delev~eGmkfdrGyiSPyf 217 (550)
T KOG0356|consen 153 TPEEIAQVATISANGDKEIGNLISDAMKKVGRKGVITVKDGK---------------TLEDELEVIEGMKFDRGYISPYF 217 (550)
T ss_pred CHHHHHHHHhhhcCCcHHHHHHHHHHHHHhCcCCeEEeecCC---------------ccccchhhhhcccccccccCccc
Confidence 7889999999998863 333445555555555554444321 33456778999999999999865
Q ss_pred -------ccccccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEec
Q 012122 160 -------KRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQ 232 (470)
Q Consensus 160 -------~~~~~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~ 232 (470)
..++++|++++.+..+ +.++.|++.++... ....|++|+++
T Consensus 218 i~~~k~~~~e~e~~~~ll~~kki-------------------------------~~v~~ivp~LE~A~-~~~~PLliIAe 265 (550)
T KOG0356|consen 218 ITSSKKQKVEFENALLLLSEKKI-------------------------------SSVQSIVPALELAL-AKRRPLLIIAE 265 (550)
T ss_pred cccchhhhhhhhhhhhhhhhhhh-------------------------------hHHHHHhHHHHHhh-hccCceEEEeh
Confidence 3456777777666544 33555555554322 34578899988
Q ss_pred CCCCHHHHHHHHHcC------cEEEecC-----ChhhHHHHHHHhCCeeccc------CCCCCCCCCcccceEEEEEECC
Q 012122 233 KGIDPLSLDLLARAG------IIALRRA-----KRRNMERLVLACGGEAVNS------VDDLTPGCLGWAGLVYEHVLGE 295 (470)
Q Consensus 233 ~~i~~~~l~~l~~~~------I~~v~~v-----~~~~l~~i~~~tGa~ii~~------~~~l~~~~lG~~~~v~~~~ig~ 295 (470)
+|+.++|..|.-|+ +.+++.. ++..+.+++.+||++++.+ +++.+..++|.|..+. +..
T Consensus 266 -Di~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evv---vtk 341 (550)
T KOG0356|consen 266 -DIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVV---VTK 341 (550)
T ss_pred -hcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEE---Eec
Confidence 99999999999995 3555554 5667999999999999984 4456778899999887 555
Q ss_pred eeEEEEEccCC-----------------------------------CCeeEEEeeCCCHHHHHHHHHHHHhHHHHHHHHh
Q 012122 296 EKYTFVENVKN-----------------------------------PHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTI 340 (470)
Q Consensus 296 ~~~~~~~~~~~-----------------------------------~~~~TIii~g~t~~~l~e~~~~l~dal~~~~~~~ 340 (470)
+....+.+..+ ..+++|-++|.++.+++|++.+++|||++++.++
T Consensus 342 d~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aav 421 (550)
T KOG0356|consen 342 DDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAV 421 (550)
T ss_pred CcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHh
Confidence 55555553221 2468999999999999999999999999999999
Q ss_pred hcCccccCCChHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhHhHHHHHHhcCCCHHHHHHHHHHhccCCCeeeEEcc
Q 012122 341 EDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQH 420 (470)
Q Consensus 341 ~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~i~~fa~aL~~ip~~L~~NaG~d~~~~i~~l~~~~~~~~~~gid~~ 420 (470)
++| +|||||++.++++..| ......-..+++.+++++.+||..|..+++.|||.|+..++.+++. ..+|||..
T Consensus 422 eeG-ivpGGG~all~~~~~l-~~lk~~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~-----~~~gyda~ 494 (550)
T KOG0356|consen 422 EEG-IVPGGGTALLRAIPVL-DELKATNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN-----DDYGYDAA 494 (550)
T ss_pred hcC-cccCCchHHHHhhhhh-hhcccccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh-----hhhhhhhh
Confidence 998 9999999999999999 8776533456778899999999999999999999999999999983 27999999
Q ss_pred CCCccCcccCCcccchHHHHHHHHHHHHHHHHHhhhhHhhhcCcC
Q 012122 421 SGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRN 465 (470)
Q Consensus 421 ~~~~~d~~~~gI~dp~~vk~~~l~~a~e~a~~lL~id~ii~~~~~ 465 (470)
+|+++||.+.||+||+.+...++..|..+|++|++++.+|.-.|.
T Consensus 495 ~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~tte~vvteipk 539 (550)
T KOG0356|consen 495 KGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTEIPK 539 (550)
T ss_pred cccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhhheeEEEeccc
Confidence 999999999999999999999999999999999999999876553
No 43
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=6.5e-41 Score=322.10 Aligned_cols=231 Identities=24% Similarity=0.333 Sum_probs=213.1
Q ss_pred chhhhhHHHHHHHHhhhhcCC---Ccccccc-ceEEEEecCCCcCCcEEEEeEEEecCCCCCCCccccccceeEEeeecc
Q 012122 100 ESLADQLTDIVVNAVLCIRKP---EEAIDLF-MVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSL 175 (470)
Q Consensus 100 ~~~~~~l~~l~~~a~~~~~~~---~~~~~~~-~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~~~~~~~~~kI~l~~~~L 175 (470)
+.|.++|++++++|+..+.+. +..+|++ +|+|++++||+++||++++|+++++++.++.||+.++||||+++++||
T Consensus 17 ~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~~L 96 (261)
T cd03334 17 ESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQGPL 96 (261)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCccCCcccCCCcEEEEeeee
Confidence 467899999999999998632 2368886 599999999999999999999999999999999999999999999999
Q ss_pred cccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCCCHHHHHHHHHcCcEEEecCC
Q 012122 176 EYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSLDLLARAGIIALRRAK 255 (470)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i~~~~l~~l~~~~I~~v~~v~ 255 (470)
++++++. ++.+++++++.|++++++.+++|..++ ++||+++|+|++.+++||.++||+++++++
T Consensus 97 e~~~~~~-------~~~~~~~~~~~E~~~l~~~v~kI~~~g---------~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~ 160 (261)
T cd03334 97 EYQRVEN-------KLLSLDPVILQEKEYLKNLVSRIVALR---------PDVILVEKSVSRIAQDLLLEAGITLVLNVK 160 (261)
T ss_pred ccccccC-------CHHHHHHHHHHHHHHHHHHHHHHHhcC---------CCEEEECCccCHHHHHHHHHCCCEEEEecC
Confidence 9998863 468899999999999999999998765 369999999999999999999999999999
Q ss_pred hhhHHHHHHHhCCeecccC-CCCCCCCCcccceEEEEEECC-----eeEEEEEccCCCCeeEEEeeCCCHHHHHHHHHHH
Q 012122 256 RRNMERLVLACGGEAVNSV-DDLTPGCLGWAGLVYEHVLGE-----EKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAV 329 (470)
Q Consensus 256 ~~~l~~i~~~tGa~ii~~~-~~l~~~~lG~~~~v~~~~ig~-----~~~~~~~~~~~~~~~TIii~g~t~~~l~e~~~~l 329 (470)
+++|+|||++|||++++++ ++++++.+|+|+.|++.++|+ ++|++|++|+.++.+||+|||+|+..++|++|++
T Consensus 161 ~~dl~rIa~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~~~TIlLRG~t~~~lde~eR~i 240 (261)
T cd03334 161 PSVLERISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKELGCTILLRGGDLEELKKVKRVV 240 (261)
T ss_pred HHHHHHHHHHhCCEEecChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCCceeEEEEECCCHHHHHHHHHHH
Confidence 9999999999999999994 589999999999999999986 6999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhhcCccc
Q 012122 330 RDGLRAVKNTIEDEAVV 346 (470)
Q Consensus 330 ~dal~~~~~~~~~~~vv 346 (470)
+||+++++++..++.++
T Consensus 241 ~Dal~v~~~~~le~~~~ 257 (261)
T cd03334 241 EFMVFAAYHLKLETSFL 257 (261)
T ss_pred HHHHHHHHHHHHhHHHH
Confidence 99999999998877554
No 44
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=4.1e-37 Score=288.00 Aligned_cols=208 Identities=42% Similarity=0.614 Sum_probs=197.2
Q ss_pred HHHHHHHhHhccccccchhhhhHHHHHHHHhhhhcCCCccccccceEEEEecCCCcCCcEEEEeEEEecCCCCCCCcccc
Q 012122 84 EILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRA 163 (470)
Q Consensus 84 ~~l~~va~tsl~sk~~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~~~~~~ 163 (470)
+.|.++|+|+++||+ +.+.+.+++++++|+..+.+.++.++.++|+|++++||+..+|++++|++|++++.++.|++.+
T Consensus 2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~~~~ 80 (209)
T cd03333 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKRL 80 (209)
T ss_pred hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhceeEeeEEEeccccCCCCCeEc
Confidence 468999999999999 9999999999999999997654467788999999999999999999999999999999999999
Q ss_pred ccceeEEeeecccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCCCHHHHHHH
Q 012122 164 ENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSLDLL 243 (470)
Q Consensus 164 ~~~kI~l~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i~~~~l~~l 243 (470)
+||||++++++|++ +|+++++|++.+++||
T Consensus 81 ~n~~Ill~~~~le~--------------------------------------------------vii~~~~I~~~al~~l 110 (209)
T cd03333 81 ENAKILLLDCPLEY--------------------------------------------------VVIAEKGIDDLALHYL 110 (209)
T ss_pred CCCcEEEEeCCeeE--------------------------------------------------EEEecCcccHHHHHHH
Confidence 99999999999863 4788999999999999
Q ss_pred HHcCcEEEecCChhhHHHHHHHhCCeecccCCCCCCCCCcccceEEEEEECCeeEEEEEccCCCCeeEEEeeCCCHHHHH
Q 012122 244 ARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDHTIA 323 (470)
Q Consensus 244 ~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIii~g~t~~~l~ 323 (470)
.++||++++++++++|+|||++|||+++++++++++..+|+|+.+++.++|+++|++|+++..++.|||+|||||+.+++
T Consensus 111 ~~~~I~~v~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~tIllrG~t~~~l~ 190 (209)
T cd03333 111 AKAGIMAVRRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGGKAATILLRGATEVELD 190 (209)
T ss_pred HHCCCEEEEeCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred HHHHHHHhHHHHHHHHhhc
Q 012122 324 QIKDAVRDGLRAVKNTIED 342 (470)
Q Consensus 324 e~~~~l~dal~~~~~~~~~ 342 (470)
|++|+++||++++++++++
T Consensus 191 e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 191 EVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999864
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.84 E-value=4e-20 Score=202.05 Aligned_cols=236 Identities=24% Similarity=0.337 Sum_probs=203.0
Q ss_pred chhhhhHHHHHHHHhhhhcCC---Cccccc-cceEEEEecCCCcCCcEEEEeEEEecCCCCCCCccccccceeEEeeecc
Q 012122 100 ESLADQLTDIVVNAVLCIRKP---EEAIDL-FMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSL 175 (470)
Q Consensus 100 ~~~~~~l~~l~~~a~~~~~~~---~~~~~~-~~i~i~~i~G~~~~~s~li~G~vl~~~~~~~~~~~~~~~~kI~l~~~~L 175 (470)
..|.+.+..++.+|.-.+.+. ++..|+ +++++.+|.||+..+|+++.|+++.+...+..|..++++|||+++.++|
T Consensus 331 ~~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~l 410 (1598)
T KOG0230|consen 331 QEWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPL 410 (1598)
T ss_pred hhHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecch
Confidence 467888889999998888764 234555 5899999999999999999999999999999999999999999999999
Q ss_pred cccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCceEEEecCCCCHHHHHHHHHcCcEEEecCC
Q 012122 176 EYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSLDLLARAGIIALRRAK 255 (470)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~~~~~~~~~~vIi~~~~i~~~~l~~l~~~~I~~v~~v~ 255 (470)
+|++...+ ...++..++.|.++++..+.+|..+. |++++.+++|+..|+++|...||..+-+++
T Consensus 411 eyqrisn~-------lsS~etvlqqE~e~lk~~varI~s~~---------p~vllVeksVS~~aqe~L~~k~I~lvlnvK 474 (1598)
T KOG0230|consen 411 EYQRISNQ-------LSSIETVLQQEKEYLKKVVARIESLR---------PDVLLVEKSVSRIAQELLLDKGISLVLNVK 474 (1598)
T ss_pred hhhhhhcc-------ccchHHHHhhHHHHHHHHHHHHHhcC---------CCeEEEechHHHHHHHHhhccCeEEEEecc
Confidence 99865432 22345666679999999999996543 689999999999999999999999999999
Q ss_pred hhhHHHHHHHhCCeecccCCCCCCCCCcccceEEEEEEC-----CeeEEEEEccCCCCeeEEEeeCCCHHHHHHHHHHHH
Q 012122 256 RRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLG-----EEKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVR 330 (470)
Q Consensus 256 ~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig-----~~~~~~~~~~~~~~~~TIii~g~t~~~l~e~~~~l~ 330 (470)
+.-|+||+++|||.|+++++.++...+|+|+.+++..+- .+.+.||++|+.+..|||++||....++.+.++.++
T Consensus 475 ~s~leRIsR~tga~I~~siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq 554 (1598)
T KOG0230|consen 475 RSLLERISRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQ 554 (1598)
T ss_pred HHHHHHHHHHhcCceecchhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCCCceEEecCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999998765543 456789999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCccccCCCh
Q 012122 331 DGLRAVKNTIEDEAVVLGAGA 351 (470)
Q Consensus 331 dal~~~~~~~~~~~vvpGGG~ 351 (470)
-+..+...+.-+-.++.--|+
T Consensus 555 ~~v~aay~l~LE~SflaDe~a 575 (1598)
T KOG0230|consen 555 YLVFAAYHLALETSFLADEGA 575 (1598)
T ss_pred HHHHHHHHHHHhhhhhhccCC
Confidence 999888776544445555554
No 46
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=27.05 E-value=45 Score=34.68 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=33.3
Q ss_pred HHHHHhHHHHHHHHhhcCccccCCChHHHHHHHHHHHHHhcc
Q 012122 326 KDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKT 367 (470)
Q Consensus 326 ~~~l~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~ 367 (470)
+|.+.+|+..+|++-+ |-+|.|||+-+-.+...| ..|++.
T Consensus 216 ~~eL~~A~~lik~ak~-PlIvaGGGv~YS~A~~~L-~af~E~ 255 (617)
T COG3962 216 ERELADAAALIKSAKK-PLIVAGGGVLYSGAREAL-RAFAET 255 (617)
T ss_pred HHHHHHHHHHHHhcCC-CEEEecCceeechHHHHH-HHHHHh
Confidence 4778899999988865 789999999888888888 777654
No 47
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=25.03 E-value=2.4e+02 Score=22.74 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=33.6
Q ss_pred ceEEEecCCCCHHHHHHHHH----cCcEEEecC------ChhhHHHHHHHhCCeecc
Q 012122 226 NFVVINQKGIDPLSLDLLAR----AGIIALRRA------KRRNMERLVLACGGEAVN 272 (470)
Q Consensus 226 ~~vIi~~~~i~~~~l~~l~~----~~I~~v~~v------~~~~l~~i~~~tGa~ii~ 272 (470)
|.+.+-..|++|.++.-+.+ +...-++.. .++..+.||..|||.++.
T Consensus 20 Pvv~IGk~Glt~~vi~ei~~aL~~hELIKvkv~~~~~~~~~e~~~~i~~~~~ae~Vq 76 (97)
T PRK10343 20 PVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIVRETGACNVQ 76 (97)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHCCcEEEEecCCChhHHHHHHHHHHHHHCCEEEe
Confidence 66888888999988766554 455555533 244568899999998874
No 48
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=22.54 E-value=3.6e+02 Score=22.73 Aligned_cols=41 Identities=27% Similarity=0.225 Sum_probs=31.7
Q ss_pred eEEEecCCCCHHHHHHHHHcCcEEEecCChhhHHHHHHHhCC
Q 012122 227 FVVINQKGIDPLSLDLLARAGIIALRRAKRRNMERLVLACGG 268 (470)
Q Consensus 227 ~vIi~~~~i~~~~l~~l~~~~I~~v~~v~~~~l~~i~~~tGa 268 (470)
++|+|. .+.+-+.++|..+||-+....+..-=+.|-....+
T Consensus 67 dvvi~~-~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g 107 (121)
T COG1433 67 DVVIAS-NIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEG 107 (121)
T ss_pred CEEEEC-ccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcC
Confidence 688887 99999999999999999988874444444444444
No 49
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=21.15 E-value=2.2e+02 Score=21.95 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=26.7
Q ss_pred eEEEecCCCCHHHHHHHHHcCcEEEecCChhhHHH
Q 012122 227 FVVINQKGIDPLSLDLLARAGIIALRRAKRRNMER 261 (470)
Q Consensus 227 ~vIi~~~~i~~~~l~~l~~~~I~~v~~v~~~~l~~ 261 (470)
++++|. .|.+.+...|.++||-++.. ...+++.
T Consensus 55 ~~li~~-~iG~~~~~~L~~~gI~v~~~-~~~~i~~ 87 (94)
T PF02579_consen 55 DVLICG-GIGEGAFRALKEAGIKVYQG-AGGDIEE 87 (94)
T ss_dssp SEEEES-CSCHHHHHHHHHTTSEEEES-TSSBHHH
T ss_pred CEEEEe-CCCHHHHHHHHHCCCEEEEc-CCCCHHH
Confidence 488886 89999999999999999998 4444433
No 50
>PHA02591 hypothetical protein; Provisional
Probab=20.17 E-value=1.4e+02 Score=23.00 Aligned_cols=37 Identities=14% Similarity=0.296 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHhh
Q 012122 34 GELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEK 70 (470)
Q Consensus 34 ~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~ 70 (470)
..+..-|.+|.++|+++..|.+.+....+.+.+++++
T Consensus 46 dd~~~vA~eL~eqGlSqeqIA~~LGVsqetVrKYL~~ 82 (83)
T PHA02591 46 DDLISVTHELARKGFTVEKIASLLGVSVRKVRRYLES 82 (83)
T ss_pred chHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHhc
Confidence 3456678888999999999999888887777777654
Done!