Query 012124
Match_columns 470
No_of_seqs 310 out of 2899
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 03:14:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012124.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012124hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aow_A Putative uncharacterize 100.0 1.8E-56 6.1E-61 451.8 37.9 417 10-465 8-446 (448)
2 2x5f_A Aspartate_tyrosine_phen 100.0 1E-58 3.5E-63 466.7 21.3 394 20-465 1-430 (430)
3 1b5p_A Protein (aspartate amin 100.0 9.1E-56 3.1E-60 438.7 40.8 377 67-462 4-383 (385)
4 1j32_A Aspartate aminotransfer 100.0 1.7E-53 5.6E-58 422.8 39.8 383 68-464 4-387 (388)
5 3h14_A Aminotransferase, class 100.0 1.7E-52 5.8E-57 416.0 39.6 374 70-465 7-383 (391)
6 1gd9_A Aspartate aminotransfer 100.0 2.8E-52 9.5E-57 414.1 40.7 380 68-465 4-387 (389)
7 2x5d_A Probable aminotransfera 100.0 2E-52 7E-57 418.4 38.4 387 67-466 10-400 (412)
8 3b46_A Aminotransferase BNA3; 100.0 6.2E-53 2.1E-57 426.3 33.1 381 74-459 33-442 (447)
9 3fvs_A Kynurenine--oxoglutarat 100.0 4E-52 1.4E-56 417.6 38.5 389 67-463 6-421 (422)
10 1o4s_A Aspartate aminotransfer 100.0 8.6E-52 2.9E-56 410.7 40.0 373 68-462 15-387 (389)
11 3ele_A Amino transferase; RER0 100.0 2E-51 6.8E-56 409.2 38.7 372 67-465 4-397 (398)
12 2o1b_A Aminotransferase, class 100.0 3.9E-52 1.3E-56 415.1 32.9 377 68-464 23-403 (404)
13 3jtx_A Aminotransferase; NP_28 100.0 8.9E-52 3E-56 411.5 34.7 371 70-461 5-395 (396)
14 1xi9_A Putative transaminase; 100.0 1.9E-51 6.7E-56 410.5 37.1 382 66-465 11-404 (406)
15 2dou_A Probable N-succinyldiam 100.0 2.2E-51 7.5E-56 405.9 37.0 364 77-461 8-375 (376)
16 1u08_A Hypothetical aminotrans 100.0 7.9E-51 2.7E-55 403.3 40.9 372 68-459 9-385 (386)
17 3dyd_A Tyrosine aminotransfera 100.0 1.4E-51 4.9E-56 414.0 35.6 363 91-465 51-425 (427)
18 2o0r_A RV0858C (N-succinyldiam 100.0 5.7E-51 2E-55 407.7 38.6 383 67-468 3-400 (411)
19 1yiz_A Kynurenine aminotransfe 100.0 1.6E-50 5.5E-55 406.8 39.9 366 95-463 38-428 (429)
20 2r2n_A Kynurenine/alpha-aminoa 100.0 5.4E-51 1.9E-55 409.6 34.9 375 67-464 7-424 (425)
21 2z61_A Probable aspartate amin 100.0 3.2E-50 1.1E-54 396.6 39.7 364 68-462 3-369 (370)
22 3e2y_A Kynurenine-oxoglutarate 100.0 1.6E-50 5.3E-55 404.3 37.7 365 92-459 21-408 (410)
23 3qgu_A LL-diaminopimelate amin 100.0 2.5E-51 8.6E-56 415.1 31.3 350 92-465 67-441 (449)
24 3fdb_A Beta C-S lyase, putativ 100.0 1.1E-50 3.6E-55 400.9 32.9 351 92-464 21-376 (377)
25 2gb3_A Aspartate aminotransfer 100.0 4.9E-50 1.7E-54 400.7 37.9 379 67-468 16-406 (409)
26 3nra_A Aspartate aminotransfer 100.0 2.5E-50 8.5E-55 402.4 34.9 357 95-465 40-406 (407)
27 3k7y_A Aspartate aminotransfer 100.0 5.6E-51 1.9E-55 404.5 29.1 365 69-463 6-404 (405)
28 3dzz_A Putative pyridoxal 5'-p 100.0 1.2E-49 4.2E-54 395.2 38.7 358 92-465 25-390 (391)
29 3ihj_A Alanine aminotransferas 100.0 1.1E-50 3.6E-55 414.3 30.8 395 67-465 28-494 (498)
30 2zc0_A Alanine glyoxylate tran 100.0 1.5E-49 5.1E-54 396.9 38.5 380 67-465 7-405 (407)
31 3kax_A Aminotransferase, class 100.0 1.3E-49 4.3E-54 394.0 37.1 353 93-461 23-382 (383)
32 3ezs_A Aminotransferase ASPB; 100.0 1.5E-50 5.2E-55 399.8 30.0 361 74-464 4-375 (376)
33 1c7n_A Cystalysin; transferase 100.0 1.7E-49 5.7E-54 395.5 36.6 356 94-466 31-395 (399)
34 4dq6_A Putative pyridoxal phos 100.0 3.4E-49 1.2E-53 392.0 38.4 351 93-461 31-390 (391)
35 1vp4_A Aminotransferase, putat 100.0 2.7E-50 9.4E-55 404.5 28.7 355 93-466 42-420 (425)
36 1d2f_A MALY protein; aminotran 100.0 4.2E-49 1.4E-53 391.4 36.9 352 95-465 29-390 (390)
37 1bw0_A TAT, protein (tyrosine 100.0 2.5E-49 8.4E-54 396.5 34.5 362 94-466 33-415 (416)
38 3tcm_A Alanine aminotransferas 100.0 4.1E-49 1.4E-53 403.1 36.6 354 109-465 108-495 (500)
39 3g0t_A Putative aminotransfera 100.0 2E-49 7E-54 399.7 33.3 372 76-463 25-436 (437)
40 3d6k_A Putative aminotransfera 100.0 1.5E-50 5E-55 406.1 23.2 373 22-465 3-419 (422)
41 3ei9_A LL-diaminopimelate amin 100.0 2.3E-48 7.7E-53 391.5 36.8 376 65-465 24-429 (432)
42 3l8a_A METC, putative aminotra 100.0 1.2E-48 4.1E-53 392.1 34.4 354 93-462 60-420 (421)
43 2zy4_A L-aspartate beta-decarb 100.0 7.1E-50 2.4E-54 411.3 24.1 419 31-464 7-522 (546)
44 3rq1_A Aminotransferase class 100.0 1.3E-48 4.4E-53 391.5 32.7 371 71-465 13-416 (418)
45 1v2d_A Glutamine aminotransfer 100.0 5.9E-48 2E-52 382.0 35.5 365 67-466 3-373 (381)
46 3t18_A Aminotransferase class 100.0 1.6E-48 5.5E-53 390.3 31.3 370 68-465 9-411 (413)
47 3asa_A LL-diaminopimelate amin 100.0 6E-48 2.1E-52 384.4 32.8 370 68-464 4-393 (400)
48 2zyj_A Alpha-aminodipate amino 100.0 1.3E-47 4.6E-52 381.5 33.7 367 68-465 11-394 (397)
49 4f4e_A Aromatic-amino-acid ami 100.0 3.5E-48 1.2E-52 388.6 28.1 370 65-461 22-419 (420)
50 1iay_A ACC synthase 2, 1-amino 100.0 1.8E-47 6.3E-52 384.4 31.2 361 95-465 37-428 (428)
51 3get_A Histidinol-phosphate am 100.0 9.2E-47 3.1E-51 371.2 32.0 334 93-461 29-364 (365)
52 3op7_A Aminotransferase class 100.0 1.7E-46 5.8E-51 370.6 33.6 328 114-466 46-373 (375)
53 3piu_A 1-aminocyclopropane-1-c 100.0 1E-46 3.6E-51 379.7 31.8 361 95-465 39-433 (435)
54 3ppl_A Aspartate aminotransfer 100.0 2.4E-47 8.3E-52 383.3 26.7 346 94-464 33-420 (427)
55 3g7q_A Valine-pyruvate aminotr 100.0 1.2E-46 4E-51 377.1 31.3 352 93-465 30-414 (417)
56 7aat_A Aspartate aminotransfer 100.0 4.8E-47 1.6E-51 378.0 28.3 351 86-461 19-400 (401)
57 3if2_A Aminotransferase; YP_26 100.0 3.7E-46 1.3E-50 376.7 33.0 371 77-466 15-442 (444)
58 3ly1_A Putative histidinol-pho 100.0 5.1E-46 1.7E-50 364.3 32.8 336 92-463 14-351 (354)
59 3f6t_A Aspartate aminotransfer 100.0 1.6E-47 5.5E-52 393.7 21.8 360 95-465 104-526 (533)
60 3b1d_A Betac-S lyase; HET: PLP 100.0 2.5E-50 8.5E-55 400.6 0.0 351 95-462 32-391 (392)
61 3ffh_A Histidinol-phosphate am 100.0 3.2E-45 1.1E-49 359.9 35.7 332 93-460 31-362 (363)
62 3ez1_A Aminotransferase MOCR f 100.0 2.7E-46 9.1E-51 375.3 25.7 345 95-464 26-415 (423)
63 1ajs_A Aspartate aminotransfer 100.0 4.8E-46 1.7E-50 372.1 27.4 369 68-464 6-411 (412)
64 1fg7_A Histidinol phosphate am 100.0 3.9E-45 1.3E-49 358.4 32.9 322 95-459 30-353 (356)
65 3fsl_A Aromatic-amino-acid ami 100.0 8.7E-46 3E-50 368.4 27.7 363 71-460 5-396 (397)
66 1yaa_A Aspartate aminotransfer 100.0 5.9E-46 2E-50 371.5 25.4 369 69-464 6-411 (412)
67 4eu1_A Mitochondrial aspartate 100.0 2.2E-46 7.4E-51 374.3 21.9 368 67-461 16-408 (409)
68 3meb_A Aspartate aminotransfer 100.0 3.6E-46 1.2E-50 376.7 23.2 368 68-465 25-445 (448)
69 1lc5_A COBD, L-threonine-O-3-p 100.0 2.6E-44 9E-49 353.6 34.7 337 92-465 22-361 (364)
70 3ftb_A Histidinol-phosphate am 100.0 3.9E-44 1.3E-48 351.8 35.6 332 92-462 24-359 (361)
71 2q7w_A Aspartate aminotransfer 100.0 2.4E-45 8.1E-50 365.1 24.2 342 93-460 25-395 (396)
72 3bwn_A AT1G70560, L-tryptophan 100.0 6.4E-46 2.2E-50 368.3 19.9 332 92-464 20-387 (391)
73 3euc_A Histidinol-phosphate am 100.0 6.4E-44 2.2E-48 351.2 33.8 332 94-462 30-366 (367)
74 4h51_A Aspartate aminotransfer 100.0 1.1E-44 3.8E-49 359.3 28.5 371 67-466 17-419 (420)
75 3cq5_A Histidinol-phosphate am 100.0 2.9E-43 1E-47 346.8 35.9 329 97-462 33-366 (369)
76 2hox_A ALLIIN lyase 1; cystein 100.0 7.3E-45 2.5E-49 364.4 22.5 329 94-463 56-424 (427)
77 3p1t_A Putative histidinol-pho 100.0 1.8E-42 6.1E-47 336.7 35.3 323 91-462 13-335 (337)
78 3hdo_A Histidinol-phosphate am 100.0 2E-42 6.7E-47 339.7 35.8 327 92-462 24-353 (360)
79 3fkd_A L-threonine-O-3-phospha 100.0 4E-43 1.4E-47 343.2 29.5 327 92-464 13-342 (350)
80 2ay1_A Aroat, aromatic amino a 100.0 1.3E-43 4.5E-48 352.3 25.6 360 71-460 5-392 (394)
81 1uu1_A Histidinol-phosphate am 100.0 2.6E-41 9E-46 328.4 27.3 314 95-460 20-334 (335)
82 3a2b_A Serine palmitoyltransfe 100.0 1.6E-40 5.4E-45 330.6 30.8 337 92-465 41-393 (398)
83 3tqx_A 2-amino-3-ketobutyrate 100.0 1.4E-38 4.8E-43 316.4 26.8 358 40-465 14-397 (399)
84 1t3i_A Probable cysteine desul 100.0 3.8E-37 1.3E-41 308.1 27.6 335 94-466 27-415 (420)
85 1bs0_A Protein (8-amino-7-oxon 100.0 1.1E-36 3.9E-41 301.3 30.0 327 93-460 38-383 (384)
86 2dr1_A PH1308 protein, 386AA l 100.0 2.2E-36 7.4E-41 299.2 29.0 321 107-464 30-379 (386)
87 1kmj_A Selenocysteine lyase; p 100.0 4.8E-36 1.6E-40 298.7 30.5 333 94-464 22-405 (406)
88 2w8t_A SPT, serine palmitoyltr 100.0 5.7E-36 1.9E-40 300.5 28.2 334 93-466 63-417 (427)
89 1fc4_A 2-amino-3-ketobutyrate 100.0 9.5E-36 3.2E-40 296.4 29.4 332 92-465 43-398 (401)
90 1vjo_A Alanine--glyoxylate ami 100.0 1.5E-36 5.3E-41 301.2 23.7 320 107-462 44-393 (393)
91 1eg5_A Aminotransferase; PLP-d 100.0 3.5E-36 1.2E-40 297.3 26.0 330 97-466 3-378 (384)
92 1e5e_A MGL, methionine gamma-l 100.0 8.7E-36 3E-40 296.5 26.7 316 97-466 21-397 (404)
93 2bwn_A 5-aminolevulinate synth 100.0 3.6E-36 1.2E-40 299.4 23.6 335 93-464 45-400 (401)
94 1sff_A 4-aminobutyrate aminotr 100.0 4.8E-36 1.6E-40 301.0 19.9 348 92-465 39-425 (426)
95 1elu_A L-cysteine/L-cystine C- 100.0 6.8E-36 2.3E-40 296.0 20.7 328 95-459 16-387 (390)
96 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 1.9E-36 6.5E-41 298.1 14.1 325 94-464 7-370 (371)
97 2z9v_A Aspartate aminotransfer 100.0 6E-35 2.1E-39 289.5 24.5 333 97-467 10-374 (392)
98 3kki_A CAI-1 autoinducer synth 100.0 1.2E-34 4E-39 289.3 26.3 332 92-464 57-404 (409)
99 1iug_A Putative aspartate amin 100.0 9.8E-35 3.4E-39 283.6 23.8 321 106-466 10-350 (352)
100 2ch1_A 3-hydroxykynurenine tra 100.0 3.2E-35 1.1E-39 291.9 20.6 329 101-467 22-386 (396)
101 4eb5_A Probable cysteine desul 100.0 2E-34 7E-39 284.6 26.3 320 107-465 11-374 (382)
102 2huf_A Alanine glyoxylate amin 100.0 9E-35 3.1E-39 288.4 23.6 331 95-467 19-386 (393)
103 3zrp_A Serine-pyruvate aminotr 100.0 6.4E-34 2.2E-38 281.1 27.9 323 106-467 11-366 (384)
104 3cai_A Possible aminotransfera 100.0 6E-34 2E-38 283.8 27.2 328 95-459 26-404 (406)
105 2eh6_A Acoat, acetylornithine 100.0 2.3E-34 7.8E-39 283.7 23.6 319 93-460 27-374 (375)
106 1m32_A 2-aminoethylphosphonate 100.0 2.1E-34 7.2E-39 282.6 23.1 328 96-464 5-365 (366)
107 3lvm_A Cysteine desulfurase; s 100.0 1.7E-34 5.9E-39 289.3 22.7 337 92-466 19-401 (423)
108 3f9t_A TDC, L-tyrosine decarbo 100.0 5.7E-34 2E-38 282.5 25.2 323 105-462 39-396 (397)
109 4hvk_A Probable cysteine desul 100.0 9.7E-34 3.3E-38 279.4 26.3 323 107-466 11-375 (382)
110 2aeu_A Hypothetical protein MJ 100.0 3.1E-33 1E-37 275.4 29.7 333 90-465 23-372 (374)
111 1svv_A Threonine aldolase; str 100.0 5.8E-34 2E-38 278.8 23.9 332 95-464 14-358 (359)
112 2yrr_A Aminotransferase, class 100.0 1.8E-34 6.2E-39 281.6 19.6 318 106-463 9-352 (353)
113 3ruy_A Ornithine aminotransfer 100.0 1.1E-33 3.9E-38 280.5 25.1 326 92-461 34-391 (392)
114 2ord_A Acoat, acetylornithine 100.0 5.9E-34 2E-38 283.1 22.4 329 92-463 38-396 (397)
115 1jg8_A L-ALLO-threonine aldola 100.0 2E-33 6.8E-38 274.0 25.2 324 95-464 4-346 (347)
116 3nnk_A Ureidoglycine-glyoxylat 100.0 3.3E-33 1.1E-37 278.8 26.5 325 106-466 22-392 (411)
117 3isl_A Purine catabolism prote 100.0 1.1E-32 3.8E-37 275.4 30.3 323 107-466 21-392 (416)
118 3i4j_A Aminotransferase, class 100.0 2.3E-33 7.8E-38 281.9 24.9 359 92-464 27-428 (430)
119 2ez2_A Beta-tyrosinase, tyrosi 100.0 1.7E-33 6E-38 284.9 24.2 359 70-465 9-432 (456)
120 3kgw_A Alanine-glyoxylate amin 100.0 4.8E-33 1.6E-37 275.7 26.7 327 105-466 31-390 (393)
121 4adb_A Succinylornithine trans 100.0 9.3E-33 3.2E-37 275.2 28.7 335 92-466 37-402 (406)
122 1v72_A Aldolase; PLP-dependent 100.0 4.3E-33 1.5E-37 272.4 25.4 329 94-464 7-353 (356)
123 2eo5_A 419AA long hypothetical 100.0 5.6E-33 1.9E-37 278.0 25.6 334 92-464 40-418 (419)
124 2dkj_A Serine hydroxymethyltra 100.0 3E-33 1E-37 278.7 23.5 336 94-463 23-387 (407)
125 2po3_A 4-dehydrase; external a 100.0 1.1E-31 3.8E-36 269.0 34.7 324 98-464 20-386 (424)
126 3nx3_A Acoat, acetylornithine 100.0 1.6E-32 5.6E-37 272.5 27.6 334 92-463 34-394 (395)
127 2pb2_A Acetylornithine/succiny 100.0 2.3E-32 7.9E-37 273.5 27.9 333 92-464 55-418 (420)
128 3dxv_A Alpha-amino-epsilon-cap 100.0 1E-32 3.6E-37 277.8 24.9 354 92-465 41-426 (439)
129 1zod_A DGD, 2,2-dialkylglycine 100.0 1.4E-32 4.9E-37 276.3 25.6 352 92-464 41-432 (433)
130 3gju_A Putative aminotransfera 100.0 5.4E-32 1.8E-36 274.0 29.9 358 92-465 49-457 (460)
131 1b9h_A AHBA synthase, protein 100.0 4.1E-32 1.4E-36 268.9 28.3 322 101-463 4-387 (388)
132 3f0h_A Aminotransferase; RER07 100.0 3.7E-32 1.3E-36 267.9 26.9 331 97-463 21-373 (376)
133 3vax_A Putative uncharacterize 100.0 1.8E-33 6.2E-38 279.7 17.5 332 94-463 19-399 (400)
134 4ffc_A 4-aminobutyrate aminotr 100.0 1.1E-32 3.7E-37 278.3 22.8 356 92-465 62-450 (453)
135 3ffr_A Phosphoserine aminotran 100.0 1.1E-31 3.7E-36 263.0 29.0 327 96-461 5-361 (362)
136 1vef_A Acetylornithine/acetyl- 100.0 1.3E-32 4.4E-37 273.2 22.2 329 92-461 43-394 (395)
137 4a6r_A Omega transaminase; tra 100.0 6.7E-32 2.3E-36 273.3 27.1 355 92-464 48-449 (459)
138 2rfv_A Methionine gamma-lyase; 100.0 6.6E-32 2.3E-36 268.4 26.5 319 98-459 24-395 (398)
139 1s0a_A Adenosylmethionine-8-am 100.0 2.1E-31 7.1E-36 267.5 30.0 341 92-465 41-425 (429)
140 1w23_A Phosphoserine aminotran 100.0 6.1E-33 2.1E-37 271.9 18.1 326 95-463 3-359 (360)
141 2oga_A Transaminase; PLP-depen 100.0 1.7E-31 5.8E-36 265.5 27.4 326 94-466 30-398 (399)
142 3a9z_A Selenocysteine lyase; P 100.0 5.4E-32 1.8E-36 272.0 24.0 333 95-467 18-431 (432)
143 3n5m_A Adenosylmethionine-8-am 100.0 2.1E-31 7E-36 269.3 28.1 354 92-463 47-451 (452)
144 1ax4_A Tryptophanase; tryptoph 100.0 6.3E-32 2.2E-36 274.3 23.2 371 70-465 10-442 (467)
145 3l44_A Glutamate-1-semialdehyd 100.0 5.3E-32 1.8E-36 272.2 21.3 351 92-465 53-431 (434)
146 1ibj_A CBL, cystathionine beta 100.0 5.5E-32 1.9E-36 272.7 20.4 325 95-463 90-461 (464)
147 2oat_A Ornithine aminotransfer 100.0 1.3E-30 4.4E-35 262.1 29.8 329 92-463 74-438 (439)
148 2bkw_A Alanine-glyoxylate amin 100.0 1.3E-31 4.6E-36 264.6 21.7 329 95-464 5-384 (385)
149 3oks_A 4-aminobutyrate transam 100.0 1.6E-31 5.5E-36 269.7 21.9 354 92-463 59-450 (451)
150 3mad_A Sphingosine-1-phosphate 100.0 4.2E-31 1.4E-35 271.3 25.3 325 110-465 114-470 (514)
151 3mc6_A Sphingosine-1-phosphate 100.0 2.1E-30 7.1E-35 265.1 29.8 330 108-466 76-439 (497)
152 1z7d_A Ornithine aminotransfer 100.0 1.1E-30 3.9E-35 262.1 26.9 333 92-465 63-430 (433)
153 3dod_A Adenosylmethionine-8-am 100.0 6.4E-31 2.2E-35 265.3 24.9 353 92-466 42-445 (448)
154 3pj0_A LMO0305 protein; struct 100.0 2.4E-31 8.1E-36 260.5 21.1 327 95-460 14-358 (359)
155 2c81_A Glutamine-2-deoxy-scyll 100.0 1.7E-29 5.7E-34 252.7 34.9 327 100-465 5-415 (418)
156 2c0r_A PSAT, phosphoserine ami 100.0 1.4E-31 4.7E-36 262.6 19.0 322 96-464 5-361 (362)
157 3lws_A Aromatic amino acid bet 100.0 2.7E-31 9.1E-36 260.0 20.9 299 124-461 40-356 (357)
158 1mdo_A ARNB aminotransferase; 100.0 4.8E-30 1.6E-34 254.4 29.3 317 95-464 9-386 (393)
159 3a8u_X Omega-amino acid--pyruv 100.0 7.9E-31 2.7E-35 264.8 22.5 343 92-464 48-447 (449)
160 1qz9_A Kynureninase; kynurenin 100.0 5.2E-30 1.8E-34 256.1 26.6 325 95-465 28-403 (416)
161 3tfu_A Adenosylmethionine-8-am 100.0 4.1E-30 1.4E-34 259.5 25.2 342 92-466 71-455 (457)
162 3e9k_A Kynureninase; kynurenin 100.0 6.6E-31 2.2E-35 266.6 19.1 379 26-464 13-461 (465)
163 3i5t_A Aminotransferase; pyrid 100.0 1.2E-29 4.2E-34 257.3 27.8 346 92-464 52-454 (476)
164 1wyu_B Glycine dehydrogenase s 100.0 1.3E-29 4.5E-34 257.3 26.5 349 80-463 48-440 (474)
165 3hmu_A Aminotransferase, class 100.0 8.3E-30 2.8E-34 258.2 24.6 351 92-464 53-452 (472)
166 3k28_A Glutamate-1-semialdehyd 100.0 4.5E-30 1.6E-34 257.7 22.4 347 92-465 51-428 (429)
167 2cy8_A D-phgat, D-phenylglycin 100.0 6.5E-30 2.2E-34 258.4 22.4 337 92-465 55-436 (453)
168 3uwc_A Nucleotide-sugar aminot 100.0 3.6E-29 1.2E-33 246.4 27.1 323 94-465 6-372 (374)
169 3n0l_A Serine hydroxymethyltra 100.0 2.9E-29 1E-33 250.7 26.8 335 95-464 26-389 (417)
170 3fq8_A Glutamate-1-semialdehyd 100.0 1.1E-29 3.8E-34 254.7 23.0 343 92-463 50-426 (427)
171 2vi8_A Serine hydroxymethyltra 100.0 2.6E-29 9E-34 250.0 25.1 337 94-465 24-388 (405)
172 2oqx_A Tryptophanase; lyase, p 100.0 1.7E-30 5.6E-35 263.8 16.6 367 70-465 8-443 (467)
173 2fnu_A Aminotransferase; prote 100.0 1.4E-28 4.7E-33 242.2 29.0 312 107-465 10-373 (375)
174 2fyf_A PSAT, phosphoserine ami 100.0 3.6E-29 1.2E-33 248.7 24.8 323 95-463 40-397 (398)
175 2epj_A Glutamate-1-semialdehyd 100.0 1.1E-29 3.8E-34 255.2 19.8 340 92-464 54-431 (434)
176 3gbx_A Serine hydroxymethyltra 100.0 4.5E-29 1.5E-33 249.5 23.5 333 97-464 33-396 (420)
177 1rv3_A Serine hydroxymethyltra 100.0 6.3E-29 2.2E-33 252.5 24.8 338 94-463 44-430 (483)
178 2cjg_A L-lysine-epsilon aminot 100.0 1.8E-29 6E-34 254.7 20.3 337 92-464 52-448 (449)
179 3dr4_A Putative perosamine syn 100.0 2.4E-28 8.1E-33 242.1 26.9 319 95-461 23-390 (391)
180 2e7u_A Glutamate-1-semialdehyd 100.0 3.8E-29 1.3E-33 250.6 20.7 335 92-460 50-423 (424)
181 4e77_A Glutamate-1-semialdehyd 100.0 6.8E-29 2.3E-33 249.2 22.4 347 92-463 51-428 (429)
182 3ndn_A O-succinylhomoserine su 100.0 7E-28 2.4E-32 239.7 28.6 288 134-461 80-413 (414)
183 2dgk_A GAD-beta, GADB, glutama 100.0 9.8E-28 3.3E-32 242.3 30.1 361 79-465 25-435 (452)
184 3ecd_A Serine hydroxymethyltra 100.0 5.9E-28 2E-32 241.8 27.4 336 95-464 33-397 (425)
185 1cs1_A CGS, protein (cystathio 100.0 9.2E-28 3.1E-32 237.5 28.3 284 129-465 50-384 (386)
186 3cog_A Cystathionine gamma-lya 100.0 4.1E-28 1.4E-32 241.0 24.3 191 129-348 65-262 (403)
187 1gc0_A Methionine gamma-lyase; 100.0 1.1E-27 3.8E-32 237.8 26.9 281 129-459 63-396 (398)
188 1pff_A Methionine gamma-lyase; 100.0 4.9E-28 1.7E-32 234.3 23.7 278 135-459 2-329 (331)
189 3qhx_A Cystathionine gamma-syn 100.0 4.6E-27 1.6E-31 232.7 26.7 282 131-460 66-390 (392)
190 3acz_A Methionine gamma-lyase; 100.0 9.6E-27 3.3E-31 230.3 28.3 281 130-463 58-388 (389)
191 1o69_A Aminotransferase; struc 100.0 6.7E-27 2.3E-31 232.0 26.8 316 109-462 11-385 (394)
192 2cb1_A O-acetyl homoserine sul 100.0 4.5E-26 1.5E-30 227.3 32.7 300 105-458 31-410 (412)
193 3h7f_A Serine hydroxymethyltra 100.0 9.1E-27 3.1E-31 234.7 27.8 337 95-464 46-414 (447)
194 3frk_A QDTB; aminotransferase, 100.0 1.3E-26 4.3E-31 228.2 27.3 308 109-463 16-367 (373)
195 1qgn_A Protein (cystathionine 100.0 2.9E-26 1E-30 229.2 29.4 283 133-463 116-444 (445)
196 3nyt_A Aminotransferase WBPE; 100.0 4.4E-26 1.5E-30 223.9 29.4 302 109-460 15-360 (367)
197 1js3_A DDC;, DOPA decarboxylas 99.9 8.1E-27 2.8E-31 237.7 22.9 331 109-466 87-476 (486)
198 1n8p_A Cystathionine gamma-lya 99.9 2.2E-26 7.6E-31 227.8 23.0 285 129-460 53-391 (393)
199 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 4.1E-25 1.4E-29 222.1 31.6 319 94-462 31-434 (437)
200 2okj_A Glutamate decarboxylase 99.9 1.4E-25 4.8E-30 229.6 28.1 341 109-464 105-502 (504)
201 3hbx_A GAD 1, glutamate decarb 99.9 1.6E-25 5.6E-30 228.4 28.4 335 107-466 67-446 (502)
202 3ri6_A O-acetylhomoserine sulf 99.9 2.3E-25 7.8E-30 222.1 26.2 282 130-461 81-429 (430)
203 2yky_A Beta-transaminase; tran 99.9 5.9E-29 2E-33 249.2 0.0 339 91-466 97-462 (465)
204 1wyu_A Glycine dehydrogenase ( 99.9 2.2E-25 7.5E-30 224.1 26.0 340 81-461 49-437 (438)
205 2x3l_A ORN/Lys/Arg decarboxyla 99.9 2E-26 6.7E-31 231.8 17.5 288 129-465 55-354 (446)
206 3vp6_A Glutamate decarboxylase 99.9 1.3E-24 4.4E-29 222.1 30.4 342 109-464 109-505 (511)
207 1ohv_A 4-aminobutyrate aminotr 99.9 2.2E-26 7.6E-31 233.1 16.5 339 92-465 61-472 (472)
208 3ke3_A Putative serine-pyruvat 99.9 1.8E-25 6.2E-30 220.4 22.3 300 133-465 33-377 (379)
209 3ju7_A Putative PLP-dependent 99.9 9.4E-25 3.2E-29 214.8 26.3 321 99-463 5-374 (377)
210 2fq6_A Cystathionine beta-lyas 99.9 2.3E-24 7.7E-29 214.2 28.7 213 133-380 84-303 (415)
211 2qma_A Diaminobutyrate-pyruvat 99.9 8.2E-25 2.8E-29 223.5 23.1 329 108-464 112-496 (497)
212 2z67_A O-phosphoseryl-tRNA(SEC 99.9 4.3E-25 1.5E-29 222.9 20.2 297 133-461 131-455 (456)
213 3b8x_A WBDK, pyridoxamine 5-ph 99.9 2.5E-23 8.4E-28 205.9 31.7 306 108-457 13-389 (390)
214 2jis_A Cysteine sulfinic acid 99.9 2.3E-23 7.9E-28 213.5 30.4 334 109-463 121-514 (515)
215 3nmy_A Xometc, cystathionine g 99.9 3E-23 1E-27 205.3 28.7 279 134-462 70-397 (400)
216 3k40_A Aromatic-L-amino-acid d 99.9 5.2E-24 1.8E-28 215.8 23.2 332 109-466 87-473 (475)
217 4e1o_A HDC, histidine decarbox 99.9 6.9E-24 2.4E-28 215.4 23.3 331 109-464 92-478 (481)
218 2a7v_A Serine hydroxymethyltra 99.9 2.5E-23 8.5E-28 209.6 24.9 335 95-462 55-439 (490)
219 3jzl_A Putative cystathionine 99.9 3.7E-23 1.3E-27 204.5 22.9 271 110-422 32-338 (409)
220 3ht4_A Aluminum resistance pro 99.9 1.9E-23 6.5E-28 208.3 20.8 257 135-422 65-344 (431)
221 2ctz_A O-acetyl-L-homoserine s 99.9 5.9E-23 2E-27 205.1 23.8 216 133-383 60-314 (421)
222 3i16_A Aluminum resistance pro 99.9 4.6E-23 1.6E-27 204.5 19.1 254 129-422 71-355 (427)
223 3hvy_A Cystathionine beta-lyas 99.9 7E-23 2.4E-27 203.1 20.2 269 110-421 47-354 (427)
224 1c4k_A Protein (ornithine deca 99.9 2.5E-22 8.4E-27 211.1 24.2 311 131-465 173-567 (730)
225 2vyc_A Biodegradative arginine 99.9 5.4E-21 1.9E-25 202.7 21.5 307 133-464 207-605 (755)
226 4ao9_A Beta-phenylalanine amin 99.8 6.3E-20 2.2E-24 182.5 22.4 343 92-466 85-448 (454)
227 3e77_A Phosphoserine aminotran 99.8 5.7E-20 1.9E-24 179.0 19.6 322 106-464 22-375 (377)
228 3m5u_A Phosphoserine aminotran 99.8 1.1E-18 3.8E-23 169.3 21.3 326 95-464 5-360 (361)
229 4e3q_A Pyruvate transaminase; 99.8 1.4E-17 4.7E-22 167.0 26.2 402 13-465 11-469 (473)
230 3n75_A LDC, lysine decarboxyla 99.8 3.3E-18 1.1E-22 178.4 21.9 305 132-464 196-560 (715)
231 3qm2_A Phosphoserine aminotran 99.8 1.4E-18 4.7E-23 170.1 16.7 312 107-463 37-384 (386)
232 4atq_A 4-aminobutyrate transam 99.8 2E-17 7E-22 165.1 23.7 351 92-463 62-454 (456)
233 4a0g_A Adenosylmethionine-8-am 99.7 4E-16 1.4E-20 166.6 19.2 352 95-466 381-830 (831)
234 3hl2_A O-phosphoseryl-tRNA(SEC 99.6 4.2E-14 1.4E-18 137.3 21.6 310 135-466 116-463 (501)
235 3ou5_A Serine hydroxymethyltra 99.6 1.4E-13 4.7E-18 133.1 23.8 334 97-462 57-439 (490)
236 3bc8_A O-phosphoseryl-tRNA(SEC 99.5 3.2E-13 1.1E-17 132.9 20.9 313 132-465 95-444 (450)
237 4ham_A LMO2241 protein; struct 99.4 4E-15 1.4E-19 123.0 -4.3 55 9-64 24-81 (134)
238 3ic7_A Putative transcriptiona 99.3 1.1E-13 3.8E-18 112.7 -0.6 55 9-64 21-78 (126)
239 3neu_A LIN1836 protein; struct 99.3 1.4E-13 5E-18 111.9 -3.4 55 9-64 23-80 (125)
240 2ek5_A Predicted transcription 99.2 2.8E-13 9.5E-18 110.5 -3.1 54 9-63 14-70 (129)
241 3tqn_A Transcriptional regulat 99.2 1.8E-13 6.3E-18 109.2 -4.6 54 9-63 19-75 (113)
242 3by6_A Predicted transcription 99.2 4.2E-13 1.4E-17 109.2 -4.2 54 9-63 21-77 (126)
243 3edp_A LIN2111 protein; APC883 99.0 6.7E-12 2.3E-16 114.1 -3.2 55 9-64 19-76 (236)
244 1hw1_A FADR, fatty acid metabo 99.0 6.7E-12 2.3E-16 114.8 -4.0 54 9-63 17-73 (239)
245 2ra5_A Putative transcriptiona 99.0 3.1E-11 1.1E-15 110.5 -0.8 55 8-63 25-82 (247)
246 2wv0_A YVOA, HTH-type transcri 99.0 1.9E-11 6.3E-16 111.7 -3.4 54 9-63 20-76 (243)
247 1v4r_A Transcriptional repress 99.0 4.8E-11 1.6E-15 93.4 -0.6 54 10-64 22-78 (102)
248 3eet_A Putative GNTR-family tr 99.0 2E-11 7E-16 113.2 -3.5 55 9-64 39-96 (272)
249 3bwg_A Uncharacterized HTH-typ 98.9 3.6E-11 1.2E-15 109.5 -3.1 55 9-64 15-72 (239)
250 3f8m_A GNTR-family protein tra 98.9 7.9E-11 2.7E-15 107.8 -3.7 51 10-64 25-78 (248)
251 2b0l_A GTP-sensing transcripti 98.8 8.8E-11 3E-15 91.2 -4.6 52 10-63 31-87 (102)
252 3ihu_A Transcriptional regulat 98.8 1.4E-10 4.9E-15 104.6 -4.4 53 9-63 26-81 (222)
253 2di3_A Bacterial regulatory pr 98.7 3.8E-10 1.3E-14 103.1 -3.4 55 9-63 14-74 (239)
254 3sxy_A Transcriptional regulat 98.7 3.7E-10 1.3E-14 101.5 -4.5 53 9-63 22-77 (218)
255 2hs5_A Putative transcriptiona 98.6 1.1E-09 3.6E-14 99.9 -4.4 52 10-63 39-93 (239)
256 3c7j_A Transcriptional regulat 98.5 6.2E-09 2.1E-13 94.6 -3.2 53 9-63 36-91 (237)
257 2v7f_A RPS19, RPS19E SSU ribos 97.6 7.3E-07 2.5E-11 73.6 -6.2 46 10-63 61-123 (150)
258 1q1h_A TFE, transcription fact 97.1 9.6E-06 3.3E-10 63.9 -4.8 50 11-62 22-78 (110)
259 2gqq_A Leucine-responsive regu 96.6 0.0002 6.8E-09 60.6 -1.5 42 9-52 15-59 (163)
260 1qbj_A Protein (double-strande 95.7 0.00051 1.8E-08 50.1 -3.0 44 18-62 23-69 (81)
261 2heo_A Z-DNA binding protein 1 94.8 0.00087 3E-08 47.1 -4.0 35 25-61 27-64 (67)
262 2jt1_A PEFI protein; solution 94.5 0.0012 4.1E-08 47.6 -3.9 35 24-58 25-62 (77)
263 2y75_A HTH-type transcriptiona 94.0 0.0036 1.2E-07 50.4 -2.5 41 21-61 24-67 (129)
264 2h09_A Transcriptional regulat 93.2 0.0035 1.2E-07 52.3 -4.1 39 24-63 55-96 (155)
265 1qgp_A Protein (double strande 91.9 0.0052 1.8E-07 44.4 -4.0 41 20-61 29-72 (77)
266 2htj_A P fimbrial regulatory p 91.8 0.0076 2.6E-07 44.0 -3.3 37 24-61 15-57 (81)
267 3t8r_A Staphylococcus aureus C 90.5 0.016 5.4E-07 47.5 -3.0 43 19-61 24-69 (143)
268 3lwf_A LIN1550 protein, putati 90.2 0.018 6.1E-07 48.0 -3.0 43 19-61 40-85 (159)
269 3e3m_A Transcriptional regulat 90.1 0.056 1.9E-06 51.5 0.0 28 12-39 1-28 (355)
270 1ylf_A RRF2 family protein; st 89.9 0.015 5.2E-07 48.0 -3.6 40 22-62 29-71 (149)
271 1on2_A Transcriptional regulat 88.3 0.02 6.8E-07 46.7 -4.0 39 24-63 23-64 (142)
272 3k69_A Putative transcription 86.3 0.058 2E-06 45.1 -2.3 41 19-60 25-68 (162)
273 3rkx_A Biotin-[acetyl-COA-carb 85.1 0.049 1.7E-06 51.2 -3.7 37 25-62 21-61 (323)
274 1oyi_A Double-stranded RNA-bin 84.0 0.043 1.5E-06 39.7 -3.6 32 24-55 31-65 (82)
275 2vn2_A DNAD, chromosome replic 83.9 0.099 3.4E-06 41.7 -1.9 35 20-54 48-85 (128)
276 2d1h_A ST1889, 109AA long hypo 82.2 0.048 1.6E-06 41.8 -4.4 36 24-60 37-75 (109)
277 2obp_A Putative DNA-binding pr 80.5 0.089 3.1E-06 39.4 -3.1 36 18-54 32-70 (96)
278 2x4h_A Hypothetical protein SS 80.1 0.087 3E-06 42.6 -3.7 38 23-62 31-71 (139)
279 1xn7_A Hypothetical protein YH 80.1 0.083 2.8E-06 38.0 -3.3 29 25-53 18-49 (78)
280 3qph_A TRMB, A global transcri 77.8 5.2 0.00018 37.6 7.4 31 25-55 34-67 (342)
281 2v79_A DNA replication protein 77.6 0.23 7.7E-06 40.0 -1.9 35 19-53 47-84 (135)
282 1i1g_A Transcriptional regulat 77.5 0.1 3.5E-06 42.3 -4.1 35 17-52 13-50 (141)
283 3k2z_A LEXA repressor; winged 77.0 0.14 4.8E-06 44.2 -3.5 34 22-55 23-59 (196)
284 2jsc_A Transcriptional regulat 75.8 0.25 8.6E-06 38.7 -2.0 30 25-54 36-68 (118)
285 2k02_A Ferrous iron transport 75.7 0.14 4.7E-06 37.6 -3.3 30 25-54 18-50 (87)
286 1xd7_A YWNA; structural genomi 74.9 0.22 7.5E-06 40.6 -2.7 36 25-61 25-63 (145)
287 1jko_C HIN recombinase, DNA-in 74.5 0.26 8.8E-06 31.6 -1.9 25 25-49 23-47 (52)
288 3gh5_A HEX1, beta-hexosaminida 74.4 11 0.00038 37.5 8.9 112 149-265 125-273 (525)
289 3h5o_A Transcriptional regulat 74.4 52 0.0018 30.1 14.0 18 22-39 3-20 (339)
290 2o0m_A Transcriptional regulat 73.4 0.69 2.4E-05 43.8 0.0 36 25-62 36-74 (345)
291 2dk5_A DNA-directed RNA polyme 72.3 0.16 5.4E-06 37.7 -3.8 35 20-54 33-70 (91)
292 3tgn_A ADC operon repressor AD 72.0 0.24 8.4E-06 40.1 -3.1 31 24-54 52-85 (146)
293 3jvd_A Transcriptional regulat 71.2 9.5 0.00032 35.3 7.4 19 21-39 4-22 (333)
294 1o5l_A Transcriptional regulat 71.1 0.84 2.9E-05 39.5 0.0 32 22-53 162-197 (213)
295 3rwb_A TPLDH, pyridoxal 4-dehy 70.4 16 0.00055 32.1 8.4 97 154-255 6-110 (247)
296 1fx7_A Iron-dependent represso 70.4 0.29 9.8E-06 43.5 -3.3 35 27-62 28-65 (230)
297 3cuo_A Uncharacterized HTH-typ 70.1 0.19 6.6E-06 37.6 -3.9 30 25-54 40-72 (99)
298 2kko_A Possible transcriptiona 69.5 0.17 5.7E-06 39.0 -4.4 30 25-54 40-72 (108)
299 3hrs_A Metalloregulator SCAR; 69.1 0.23 8E-06 43.5 -4.1 38 24-62 21-61 (214)
300 2bv6_A MGRA, HTH-type transcri 69.1 0.31 1E-05 39.3 -3.1 31 24-54 52-85 (142)
301 3fm5_A Transcriptional regulat 68.4 0.37 1.3E-05 39.2 -2.8 30 25-54 56-88 (150)
302 2qvo_A Uncharacterized protein 68.3 0.29 1E-05 36.5 -3.1 28 24-51 31-61 (95)
303 3pqk_A Biofilm growth-associat 68.1 0.37 1.3E-05 36.5 -2.7 35 25-61 38-75 (102)
304 3jth_A Transcription activator 67.9 0.27 9.1E-06 36.9 -3.5 35 25-61 38-75 (98)
305 1y0u_A Arsenical resistance op 67.5 0.25 8.5E-06 37.0 -3.7 31 24-54 44-77 (96)
306 1jak_A Beta-N-acetylhexosamini 67.4 12 0.00043 37.1 7.6 111 150-265 102-248 (512)
307 4fgs_A Probable dehydrogenase 67.2 12 0.00042 33.7 6.9 98 153-256 28-134 (273)
308 3r0a_A Putative transcriptiona 67.1 0.28 9.7E-06 38.7 -3.6 31 24-54 43-76 (123)
309 3bil_A Probable LACI-family tr 66.7 6 0.00021 37.0 5.0 22 21-42 6-30 (348)
310 3jw4_A Transcriptional regulat 66.5 0.45 1.5E-05 38.6 -2.7 31 24-54 58-91 (148)
311 3gem_A Short chain dehydrogena 66.5 18 0.00061 32.2 7.9 95 153-254 26-127 (260)
312 1bia_A BIRA bifunctional prote 65.4 0.39 1.3E-05 45.0 -3.6 40 23-63 19-62 (321)
313 1sfx_A Conserved hypothetical 65.4 0.33 1.1E-05 36.8 -3.4 31 24-54 35-68 (109)
314 2oqg_A Possible transcriptiona 65.0 0.34 1.2E-05 37.4 -3.5 31 24-54 35-68 (114)
315 3tpc_A Short chain alcohol deh 65.0 20 0.00069 31.6 8.0 98 153-255 6-115 (257)
316 2frh_A SARA, staphylococcal ac 64.8 0.33 1.1E-05 38.5 -3.7 31 24-54 54-87 (127)
317 4hp8_A 2-deoxy-D-gluconate 3-d 64.1 25 0.00086 31.1 8.2 99 153-256 8-110 (247)
318 3bro_A Transcriptional regulat 63.5 0.34 1.2E-05 38.9 -3.9 31 24-54 51-84 (141)
319 3kp7_A Transcriptional regulat 63.1 0.54 1.8E-05 38.3 -2.8 30 24-53 52-84 (151)
320 2nu8_A Succinyl-COA ligase [AD 62.9 46 0.0016 30.1 10.1 75 186-271 51-125 (288)
321 1sfu_A 34L protein; protein/Z- 62.8 0.35 1.2E-05 34.0 -3.3 39 16-55 23-64 (75)
322 3ech_A MEXR, multidrug resista 62.6 0.45 1.5E-05 38.3 -3.4 31 24-54 52-85 (142)
323 4dqx_A Probable oxidoreductase 62.3 22 0.00074 32.0 7.7 98 153-255 26-131 (277)
324 2fu4_A Ferric uptake regulatio 62.0 0.3 1E-05 35.3 -4.1 34 22-55 32-73 (83)
325 2dbb_A Putative HTH-type trans 61.9 0.5 1.7E-05 38.7 -3.2 32 20-52 21-55 (151)
326 1r1u_A CZRA, repressor protein 61.7 0.34 1.2E-05 37.0 -4.0 30 25-54 41-73 (106)
327 1p6r_A Penicillinase repressor 61.6 0.2 6.9E-06 36.2 -5.1 32 24-55 24-62 (82)
328 3k0l_A Repressor protein; heli 61.5 0.53 1.8E-05 38.9 -3.1 31 24-54 61-94 (162)
329 1ku9_A Hypothetical protein MJ 61.5 0.41 1.4E-05 38.8 -3.8 31 24-54 42-75 (152)
330 1tbx_A ORF F-93, hypothetical 61.4 0.62 2.1E-05 34.9 -2.5 31 25-55 24-61 (99)
331 2k4b_A Transcriptional regulat 61.3 0.37 1.3E-05 36.4 -3.7 31 24-54 50-87 (99)
332 3tzq_B Short-chain type dehydr 61.2 33 0.0011 30.5 8.8 98 153-255 10-117 (271)
333 2nnn_A Probable transcriptiona 61.2 0.54 1.8E-05 37.5 -3.1 31 24-54 53-86 (140)
334 2gjx_A Beta-hexosaminidase alp 61.1 14 0.00047 36.8 6.5 107 150-265 96-232 (507)
335 3b73_A PHIH1 repressor-like pr 61.0 0.67 2.3E-05 35.7 -2.4 34 26-61 30-68 (111)
336 2o23_A HADH2 protein; HSD17B10 60.5 59 0.002 28.4 10.3 97 153-254 11-121 (265)
337 2w48_A Sorbitol operon regulat 60.3 0.59 2E-05 43.6 -3.4 29 25-53 23-54 (315)
338 2cfx_A HTH-type transcriptiona 60.1 0.51 1.7E-05 38.3 -3.4 29 24-52 20-51 (144)
339 1ub9_A Hypothetical protein PH 60.0 0.48 1.7E-05 35.4 -3.4 30 25-54 32-64 (100)
340 1z91_A Organic hydroperoxide r 59.8 0.53 1.8E-05 38.0 -3.4 31 24-54 55-88 (147)
341 3m1a_A Putative dehydrogenase; 59.7 24 0.00082 31.5 7.6 95 155-254 6-108 (281)
342 4g81_D Putative hexonate dehyd 59.6 31 0.001 30.7 8.0 98 152-255 7-116 (255)
343 3i4p_A Transcriptional regulat 59.5 0.69 2.3E-05 38.4 -2.8 33 19-52 14-49 (162)
344 3bpv_A Transcriptional regulat 59.0 0.53 1.8E-05 37.5 -3.5 31 24-54 44-77 (138)
345 3rjz_A N-type ATP pyrophosphat 59.0 52 0.0018 28.8 9.2 99 156-265 7-120 (237)
346 3h7a_A Short chain dehydrogena 58.7 58 0.002 28.5 9.8 98 153-255 6-113 (252)
347 2oz6_A Virulence factor regula 58.6 0.59 2E-05 40.1 -3.5 30 24-53 165-197 (207)
348 2pn6_A ST1022, 150AA long hypo 58.5 0.61 2.1E-05 38.1 -3.3 30 24-53 18-50 (150)
349 2fbh_A Transcriptional regulat 58.4 0.49 1.7E-05 38.1 -3.9 31 24-54 53-86 (146)
350 3rd5_A Mypaa.01249.C; ssgcid, 58.4 13 0.00045 33.6 5.6 76 153-233 15-92 (291)
351 3dkw_A DNR protein; CRP-FNR, H 58.3 0.78 2.7E-05 40.0 -2.8 29 25-53 180-211 (227)
352 3grp_A 3-oxoacyl-(acyl carrier 58.2 24 0.00081 31.5 7.2 97 153-254 26-130 (266)
353 2gxg_A 146AA long hypothetical 57.7 0.68 2.3E-05 37.2 -3.1 31 24-54 51-84 (146)
354 3boq_A Transcriptional regulat 57.6 0.71 2.4E-05 37.9 -3.0 31 24-54 63-96 (160)
355 2hr3_A Probable transcriptiona 57.5 0.69 2.4E-05 37.3 -3.1 31 24-54 51-84 (147)
356 4e6p_A Probable sorbitol dehyd 57.5 25 0.00087 31.0 7.2 97 153-254 7-111 (259)
357 3hsr_A HTH-type transcriptiona 57.3 0.47 1.6E-05 38.1 -4.1 31 24-54 51-84 (140)
358 3dbi_A Sugar-binding transcrip 57.0 12 0.00041 34.6 5.1 18 22-39 2-19 (338)
359 1stz_A Heat-inducible transcri 56.9 0.88 3E-05 42.8 -2.8 32 24-55 37-73 (338)
360 4hbl_A Transcriptional regulat 56.9 0.52 1.8E-05 38.3 -4.0 30 25-54 57-89 (149)
361 3nrv_A Putative transcriptiona 56.9 0.61 2.1E-05 37.7 -3.5 30 25-54 56-88 (148)
362 3bja_A Transcriptional regulat 56.6 0.85 2.9E-05 36.3 -2.7 31 24-54 48-81 (139)
363 1j5y_A Transcriptional regulat 56.5 0.59 2E-05 39.9 -3.8 39 24-64 37-79 (187)
364 3oop_A LIN2960 protein; protei 56.5 0.5 1.7E-05 38.0 -4.1 30 25-54 53-85 (143)
365 2fbi_A Probable transcriptiona 56.4 0.66 2.3E-05 37.1 -3.4 31 24-54 51-84 (142)
366 3rcn_A Beta-N-acetylhexosamini 56.2 13 0.00043 37.3 5.3 115 149-265 81-241 (543)
367 3eco_A MEPR; mutlidrug efflux 56.2 0.58 2E-05 37.4 -3.7 31 24-54 48-81 (139)
368 3bdd_A Regulatory protein MARR 56.2 0.65 2.2E-05 37.1 -3.4 31 24-54 46-79 (142)
369 4aik_A Transcriptional regulat 56.0 0.59 2E-05 38.3 -3.7 30 25-54 48-80 (151)
370 1uls_A Putative 3-oxoacyl-acyl 56.0 37 0.0013 29.6 8.0 94 155-255 6-107 (245)
371 3g3z_A NMB1585, transcriptiona 55.7 0.6 2E-05 37.7 -3.8 31 24-54 46-79 (145)
372 3e6m_A MARR family transcripti 55.6 0.63 2.2E-05 38.4 -3.7 30 25-54 69-101 (161)
373 3u2r_A Regulatory protein MARR 55.5 0.65 2.2E-05 38.6 -3.7 31 24-54 63-96 (168)
374 3gvc_A Oxidoreductase, probabl 55.4 20 0.00067 32.3 6.1 96 155-255 30-133 (277)
375 2cg4_A Regulatory protein ASNC 55.1 0.67 2.3E-05 37.9 -3.6 31 21-52 21-54 (152)
376 2ew8_A (S)-1-phenylethanol deh 55.0 49 0.0017 28.9 8.7 96 155-255 8-112 (249)
377 2fa5_A Transcriptional regulat 54.9 0.7 2.4E-05 38.0 -3.5 30 25-54 65-97 (162)
378 3dmy_A Protein FDRA; predicted 54.7 32 0.0011 33.8 7.8 109 184-324 20-129 (480)
379 3b02_A Transcriptional regulat 54.6 0.87 3E-05 38.8 -3.1 29 25-53 141-172 (195)
380 2fbk_A Transcriptional regulat 54.6 0.97 3.3E-05 38.1 -2.7 30 25-54 88-120 (181)
381 1z7u_A Hypothetical protein EF 54.4 0.62 2.1E-05 35.9 -3.7 30 25-54 37-70 (112)
382 2w25_A Probable transcriptiona 54.4 0.73 2.5E-05 37.6 -3.4 29 24-52 22-53 (150)
383 4b8x_A SCO5413, possible MARR- 54.1 0.56 1.9E-05 38.2 -4.2 30 25-54 53-85 (147)
384 3deu_A Transcriptional regulat 54.1 0.63 2.1E-05 38.7 -4.0 31 24-54 69-102 (166)
385 3s2w_A Transcriptional regulat 53.7 0.59 2E-05 38.4 -4.2 30 25-54 66-98 (159)
386 4eso_A Putative oxidoreductase 53.5 27 0.00092 30.8 6.7 98 153-255 7-112 (255)
387 3bj6_A Transcriptional regulat 53.5 0.7 2.4E-05 37.5 -3.7 30 25-54 56-88 (152)
388 3guy_A Short-chain dehydrogena 53.4 19 0.00065 31.1 5.5 95 156-255 3-102 (230)
389 2ia0_A Putative HTH-type trans 53.4 0.8 2.7E-05 38.4 -3.4 30 22-52 31-63 (171)
390 2p5v_A Transcriptional regulat 53.3 0.8 2.7E-05 38.0 -3.4 29 25-53 26-57 (162)
391 2cyy_A Putative HTH-type trans 53.3 0.79 2.7E-05 37.5 -3.4 29 24-52 22-53 (151)
392 1c7s_A Beta-N-acetylhexosamini 53.3 25 0.00085 37.3 7.1 114 150-265 264-417 (858)
393 3ryp_A Catabolite gene activat 53.2 0.78 2.7E-05 39.4 -3.7 29 25-53 169-200 (210)
394 3n74_A 3-ketoacyl-(acyl-carrie 53.2 36 0.0012 29.9 7.6 98 153-255 8-114 (261)
395 1tc3_C Protein (TC3 transposas 52.8 0.93 3.2E-05 28.5 -2.5 17 25-41 23-39 (51)
396 4ev0_A Transcription regulator 52.7 0.82 2.8E-05 39.5 -3.6 29 25-53 165-196 (216)
397 3zu3_A Putative reductase YPO4 52.6 1.1E+02 0.0037 29.2 10.9 88 131-224 24-128 (405)
398 3cdh_A Transcriptional regulat 52.5 0.95 3.2E-05 36.9 -3.1 31 24-54 58-91 (155)
399 2pex_A Transcriptional regulat 52.5 0.74 2.5E-05 37.5 -3.7 31 24-54 62-95 (153)
400 1s3j_A YUSO protein; structura 52.2 0.76 2.6E-05 37.4 -3.7 31 24-54 52-85 (155)
401 2rdp_A Putative transcriptiona 52.1 0.84 2.9E-05 36.9 -3.4 31 24-54 57-90 (150)
402 2eth_A Transcriptional regulat 51.9 0.99 3.4E-05 36.8 -3.1 31 24-54 59-92 (154)
403 2a61_A Transcriptional regulat 51.9 0.85 2.9E-05 36.6 -3.4 31 24-54 48-81 (145)
404 2zcw_A TTHA1359, transcription 51.8 0.88 3E-05 39.0 -3.5 29 25-53 148-179 (202)
405 3f3x_A Transcriptional regulat 51.8 0.64 2.2E-05 37.4 -4.2 31 25-55 52-85 (144)
406 2qq9_A Diphtheria toxin repres 51.8 1 3.5E-05 39.7 -3.1 36 25-61 26-64 (226)
407 3sc4_A Short chain dehydrogena 51.6 92 0.0031 27.8 10.1 98 153-255 8-123 (285)
408 3cjn_A Transcriptional regulat 51.5 0.8 2.7E-05 37.7 -3.7 31 24-54 67-100 (162)
409 3ppi_A 3-hydroxyacyl-COA dehyd 51.5 28 0.00096 31.1 6.6 96 155-255 31-139 (281)
410 4ibo_A Gluconate dehydrogenase 51.5 45 0.0015 29.7 7.9 98 153-255 25-133 (271)
411 4fx0_A Probable transcriptiona 51.5 0.92 3.1E-05 36.9 -3.3 28 25-52 54-84 (148)
412 2yv2_A Succinyl-COA synthetase 51.3 21 0.00071 32.7 5.6 77 185-272 56-133 (297)
413 2pg4_A Uncharacterized protein 51.3 0.82 2.8E-05 33.9 -3.3 28 24-51 31-62 (95)
414 2nyx_A Probable transcriptiona 51.3 0.82 2.8E-05 38.0 -3.7 31 24-54 60-93 (168)
415 1bqc_A Protein (beta-mannanase 51.1 30 0.001 31.4 6.8 50 191-269 37-86 (302)
416 2hzt_A Putative HTH-type trans 51.1 0.8 2.7E-05 35.0 -3.5 30 25-54 29-62 (107)
417 1hxh_A 3BETA/17BETA-hydroxyste 51.1 46 0.0016 29.1 7.8 96 155-255 7-110 (253)
418 3f8l_A HTH-type transcriptiona 51.0 3.2 0.00011 35.6 0.0 21 43-64 16-37 (201)
419 3f6o_A Probable transcriptiona 50.9 0.9 3.1E-05 35.3 -3.3 30 25-54 33-65 (118)
420 3pxx_A Carveol dehydrogenase; 50.5 46 0.0016 29.7 7.9 97 154-255 10-127 (287)
421 2wte_A CSA3; antiviral protein 50.5 0.93 3.2E-05 40.5 -3.6 31 24-54 167-200 (244)
422 3kjx_A Transcriptional regulat 50.3 1.8 6.1E-05 40.6 -1.9 22 18-39 5-26 (344)
423 2p8t_A Hypothetical protein PH 50.3 0.83 2.8E-05 39.1 -3.8 37 25-63 32-71 (200)
424 4gkb_A 3-oxoacyl-[acyl-carrier 50.2 85 0.0029 27.8 9.4 98 152-255 5-112 (258)
425 1bja_A Transcription regulator 50.2 1.1 3.7E-05 33.3 -2.7 34 23-58 30-67 (95)
426 3op4_A 3-oxoacyl-[acyl-carrier 50.0 32 0.0011 30.1 6.6 98 153-255 8-113 (248)
427 3dv8_A Transcriptional regulat 50.0 0.96 3.3E-05 39.2 -3.7 29 25-53 171-202 (220)
428 1ft9_A Carbon monoxide oxidati 50.0 1 3.5E-05 39.2 -3.4 29 25-53 165-196 (222)
429 3iwz_A CAP-like, catabolite ac 49.9 0.97 3.3E-05 39.5 -3.7 32 22-53 185-220 (230)
430 2gau_A Transcriptional regulat 49.8 1.1 3.8E-05 39.2 -3.3 29 25-53 182-213 (232)
431 1now_A Beta-hexosaminidase bet 49.8 29 0.00098 34.4 6.7 106 150-265 102-237 (507)
432 2yv1_A Succinyl-COA ligase [AD 49.6 14 0.00047 33.8 4.1 76 186-272 57-132 (294)
433 3l6e_A Oxidoreductase, short-c 49.5 27 0.00091 30.4 5.9 95 156-255 5-107 (235)
434 2xrn_A HTH-type transcriptiona 49.3 1.1 3.8E-05 39.9 -3.4 37 24-61 22-61 (241)
435 2e1c_A Putative HTH-type trans 49.2 1.1 3.7E-05 37.6 -3.3 30 22-52 41-73 (171)
436 1lj9_A Transcriptional regulat 49.0 0.89 3.1E-05 36.5 -3.7 30 25-54 45-77 (144)
437 1jgs_A Multiple antibiotic res 48.9 1 3.5E-05 35.8 -3.4 31 24-54 49-82 (138)
438 1x1t_A D(-)-3-hydroxybutyrate 48.6 62 0.0021 28.4 8.3 94 156-254 6-112 (260)
439 3rih_A Short chain dehydrogena 48.6 73 0.0025 28.7 8.9 98 153-255 40-149 (293)
440 3l77_A Short-chain alcohol deh 48.5 74 0.0025 27.2 8.7 95 156-255 4-110 (235)
441 2lkp_A Transcriptional regulat 48.5 0.68 2.3E-05 36.0 -4.4 31 24-54 46-79 (119)
442 2qww_A Transcriptional regulat 48.3 0.95 3.2E-05 36.8 -3.7 29 24-52 56-87 (154)
443 1hdc_A 3-alpha, 20 beta-hydrox 48.3 40 0.0014 29.6 7.0 95 155-254 6-108 (254)
444 2fmy_A COOA, carbon monoxide o 48.3 1.1 3.7E-05 39.0 -3.6 29 25-53 169-200 (220)
445 3gaf_A 7-alpha-hydroxysteroid 48.2 42 0.0014 29.5 7.0 98 153-255 11-118 (256)
446 1vl8_A Gluconate 5-dehydrogena 48.0 53 0.0018 29.1 7.8 98 153-255 20-129 (267)
447 2xvc_A ESCRT-III, SSO0910; cel 48.0 0.66 2.2E-05 30.4 -3.6 26 26-51 28-56 (59)
448 4fc7_A Peroxisomal 2,4-dienoyl 47.9 61 0.0021 28.8 8.2 96 155-255 28-135 (277)
449 3nqo_A MARR-family transcripti 47.9 0.96 3.3E-05 38.5 -3.9 30 25-54 59-91 (189)
450 3pff_A ATP-citrate synthase; p 47.8 69 0.0024 33.8 9.4 72 185-269 550-625 (829)
451 3e97_A Transcriptional regulat 47.7 1.1 3.9E-05 39.1 -3.6 29 25-53 177-208 (231)
452 1zyb_A Transcription regulator 47.4 1.2 4E-05 39.2 -3.6 29 25-53 188-219 (232)
453 3mwd_B ATP-citrate synthase; A 47.2 30 0.001 32.2 5.9 76 185-271 64-141 (334)
454 1u2w_A CADC repressor, cadmium 47.2 0.91 3.1E-05 35.6 -3.8 30 25-54 58-90 (122)
455 3lyl_A 3-oxoacyl-(acyl-carrier 47.0 52 0.0018 28.5 7.5 97 154-255 5-112 (247)
456 2p5k_A Arginine repressor; DNA 47.0 0.99 3.4E-05 30.5 -3.2 33 22-55 18-55 (64)
457 3la7_A Global nitrogen regulat 46.9 1.2 4E-05 39.6 -3.7 29 25-53 195-226 (243)
458 1oi7_A Succinyl-COA synthetase 46.8 20 0.00069 32.6 4.7 77 185-272 50-126 (288)
459 3df8_A Possible HXLR family tr 46.5 1.2 4E-05 34.3 -3.2 29 26-54 45-77 (111)
460 4b79_A PA4098, probable short- 46.5 59 0.002 28.6 7.6 92 155-255 12-106 (242)
461 3d0s_A Transcriptional regulat 46.4 1.2 4.1E-05 38.9 -3.6 29 25-53 179-210 (227)
462 1r1t_A Transcriptional repress 46.3 0.8 2.7E-05 36.0 -4.3 30 25-54 61-93 (122)
463 2ae2_A Protein (tropinone redu 46.3 86 0.0029 27.4 8.9 97 153-254 8-116 (260)
464 1xmk_A Double-stranded RNA-spe 46.3 0.88 3E-05 32.6 -3.6 28 26-53 28-59 (79)
465 3t7c_A Carveol dehydrogenase; 46.2 66 0.0023 29.0 8.3 98 153-255 27-148 (299)
466 2q2v_A Beta-D-hydroxybutyrate 46.1 1.1E+02 0.0039 26.5 9.7 95 155-254 5-108 (255)
467 2f2e_A PA1607; transcription f 46.1 0.99 3.4E-05 36.7 -3.9 30 25-54 39-71 (146)
468 3r1i_A Short-chain type dehydr 45.8 91 0.0031 27.7 9.0 98 153-255 31-139 (276)
469 3kvo_A Hydroxysteroid dehydrog 45.8 1.8E+02 0.0063 26.8 11.9 96 154-254 45-158 (346)
470 2gjh_A Designed protein; oblig 45.7 50 0.0017 20.6 4.8 29 438-466 3-32 (62)
471 2fxa_A Protease production reg 45.1 1.1 3.9E-05 38.8 -3.9 31 24-54 63-96 (207)
472 3e6c_C CPRK, cyclic nucleotide 44.8 1.3 4.5E-05 39.4 -3.7 29 25-53 179-210 (250)
473 1mkm_A ICLR transcriptional re 44.8 1.6 5.6E-05 39.0 -3.0 36 24-61 24-62 (249)
474 3f9i_A 3-oxoacyl-[acyl-carrier 44.6 35 0.0012 29.7 5.9 77 153-234 13-91 (249)
475 3dqp_A Oxidoreductase YLBE; al 44.3 79 0.0027 26.6 8.1 93 156-259 2-96 (219)
476 1hjs_A Beta-1,4-galactanase; 4 44.3 65 0.0022 29.8 7.9 38 236-274 49-86 (332)
477 3rkr_A Short chain oxidoreduct 44.1 70 0.0024 28.1 7.9 95 155-254 30-136 (262)
478 4fn4_A Short chain dehydrogena 44.1 54 0.0018 29.1 7.0 95 155-255 8-115 (254)
479 3ai3_A NADPH-sorbose reductase 43.8 73 0.0025 27.9 8.0 97 153-254 6-114 (263)
480 1jhg_A Trp operon repressor; c 43.8 1.8 6.1E-05 32.6 -2.4 15 25-39 60-74 (101)
481 3tsc_A Putative oxidoreductase 43.8 44 0.0015 29.8 6.5 98 153-255 10-131 (277)
482 2jah_A Clavulanic acid dehydro 43.7 68 0.0023 27.9 7.7 96 155-255 8-114 (247)
483 3tfo_A Putative 3-oxoacyl-(acy 43.5 70 0.0024 28.3 7.8 95 156-255 6-111 (264)
484 3fx3_A Cyclic nucleotide-bindi 43.5 2.3 7.9E-05 37.3 -2.2 28 22-49 176-207 (237)
485 3ak4_A NADH-dependent quinucli 43.5 60 0.002 28.5 7.4 96 154-254 12-115 (263)
486 3tjr_A Short chain dehydrogena 43.4 62 0.0021 29.2 7.6 97 154-255 31-138 (301)
487 3ged_A Short-chain dehydrogena 43.3 51 0.0017 29.1 6.7 93 156-255 4-105 (247)
488 4dyv_A Short-chain dehydrogena 43.3 46 0.0016 29.7 6.5 95 156-255 30-133 (272)
489 2bgc_A PRFA; bacterial infecti 43.1 1.8 6E-05 38.2 -3.1 29 25-53 171-203 (238)
490 3kcc_A Catabolite gene activat 43.0 1.5 5E-05 39.4 -3.7 29 25-53 219-250 (260)
491 4dmm_A 3-oxoacyl-[acyl-carrier 42.9 42 0.0014 29.8 6.2 98 153-255 27-136 (269)
492 3e03_A Short chain dehydrogena 42.9 1.7E+02 0.0059 25.7 11.0 97 153-254 5-119 (274)
493 3s55_A Putative short-chain de 42.8 81 0.0028 28.0 8.2 98 153-255 9-129 (281)
494 3ozo_A N-acetylglucosaminidase 42.7 61 0.0021 32.6 7.8 62 194-265 212-273 (572)
495 1fmc_A 7 alpha-hydroxysteroid 42.5 84 0.0029 27.2 8.2 97 153-254 10-116 (255)
496 3d3w_A L-xylulose reductase; u 42.3 1.3E+02 0.0043 25.8 9.3 95 153-254 6-105 (244)
497 4imr_A 3-oxoacyl-(acyl-carrier 42.2 1.3E+02 0.0044 26.6 9.5 98 153-255 32-139 (275)
498 3qlj_A Short chain dehydrogena 42.2 64 0.0022 29.5 7.6 96 155-255 28-144 (322)
499 1nff_A Putative oxidoreductase 42.2 64 0.0022 28.3 7.3 95 155-254 8-110 (260)
500 3qiv_A Short-chain dehydrogena 42.1 79 0.0027 27.4 7.9 97 153-254 8-118 (253)
No 1
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=100.00 E-value=1.8e-56 Score=451.82 Aligned_cols=417 Identities=18% Similarity=0.312 Sum_probs=330.0
Q ss_pred ccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccccCccccccccCCchHHHHHHHH
Q 012124 10 SFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQA 86 (470)
Q Consensus 10 ~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (470)
++-++|....|..+| ..||++| ||++|..+|++.++.+ .-+ ..++.+....+++.+..+.+..
T Consensus 8 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~s~~~~~~~~s~~~~~~~~~ 73 (448)
T 3aow_A 8 HHHSSGLVPRGSHMH--------EDVQLNIYVHSQEGIGMEENIKSMLG-DVE-----RFFSKKALEMRASEVRELLKLV 73 (448)
T ss_dssp ---------------------------------------------CTTS-CGG-----GGCCHHHHHCCCCHHHHHHHHH
T ss_pred cccccCcccCCcccc--------cccccccccccchhhhhhhccccccc-chH-----HHhhHHHhcCCCcHHHHHHHhc
Confidence 344677777777777 7899999 9999999999998755 321 1245566667777666654432
Q ss_pred HHHHhcCCCeEEccCCCCCCC--ChHHHHHHHHHHHHcC---CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEec
Q 012124 87 TALAQAGVSVIRLAAGEPDFD--TPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSN 161 (470)
Q Consensus 87 ~~~~~~~~~~i~l~~g~~~~~--~~~~~~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~ 161 (470)
.++++|+|+.|.|+.. +++.+.+++.+.+... ...|++..|..+||++|++++.+.+|++ ++++|++|+
T Consensus 74 -----~~~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~~~v~~t~ 147 (448)
T 3aow_A 74 -----ETSDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGIS-QDNDIMITS 147 (448)
T ss_dssp -----HTSSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCC-TTSEEEEES
T ss_pred -----cCCCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcC-ChhhEEEeC
Confidence 2457899999998755 5788999998888653 3689888999999999999998888977 889999999
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc----C--CceEEE-Ec
Q 012124 162 GAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT----E--KSRLLI-LC 234 (470)
Q Consensus 162 g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~--~~~~i~-l~ 234 (470)
|+++++++++++++++||+|++++|+|+++...++..|++++.+|++.+ ++|++.|+++++ + ++++|+ ++
T Consensus 148 G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~L~~~l~~~~~~~~~~k~v~~~~ 224 (448)
T 3aow_A 148 GSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDE---GMKVEILEEKLKELKSQGKKVKVVYTVP 224 (448)
T ss_dssp SHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT---EECHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEeccCCC---CCCHHHHHHHHhhhhccCCCCeEEEECC
Confidence 9999999999999999999999999999999999999999999998753 389999999987 5 789885 68
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEE
Q 012124 235 SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 314 (470)
Q Consensus 235 ~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~ 314 (470)
+||||||.++|.+++++|+++|++| |++||+||+|.++.|++...+++..++. .+++++++||||.++ +|+|+||++
T Consensus 225 ~~~NPtG~~~~~~~l~~i~~la~~~-~~~lI~De~y~~~~~~g~~~~~~~~~~~-~~~vi~~~S~SK~~~-~GlriG~v~ 301 (448)
T 3aow_A 225 TFQNPAGVTMNEDRRKYLLELASEY-DFIVVEDDPYGELRYSGNPEKKIKALDN-EGRVIYLGTFSKILA-PGFRIGWMV 301 (448)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECSCTTCBCSSCCCCCTGGGCT-TSCEEEEEESTTTTC-GGGCCEEEE
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHHc-CCEEEEECCCccccCCCCCCcCHHhcCC-CCCEEEEccchhhcc-ccccEEEEE
Confidence 9999999999999999999999999 9999999999999987766677777764 578999999999999 999999999
Q ss_pred cCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CC-CCeecCCCceEEEe
Q 012124 315 GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LE-GVKMSEPQGAFYLF 392 (470)
Q Consensus 315 ~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~-g~~~~~~~~g~~~~ 392 (470)
+++++++.+.......+++++.+.|.++.++|+.+.+ .++++++++.|+++++.+.+.|++ +| |+.+..|.+|+|+|
T Consensus 302 ~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~ 380 (448)
T 3aow_A 302 GDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYL-EKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIW 380 (448)
T ss_dssp ECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEE
T ss_pred eCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEEEE
Confidence 9999999998887777778899999999999987533 688999999999999999999987 67 68888889999999
Q ss_pred eeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEeec-CHHHHHHHHHHHHHHHHhhC
Q 012124 393 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIRISYAA-SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~----~~~iRls~~~-~~~~i~~~l~~l~~~l~~~~ 465 (470)
+++|+.. +..+++++|+++ ||.+.||..|+. ++++||+++. +++++++++++|++++++..
T Consensus 381 v~~~~~~-----------~~~~l~~~l~~~-gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L~~~l~~~~ 446 (448)
T 3aow_A 381 VTLPDGI-----------DSKKMLERAIKK-GVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAETIKEEL 446 (448)
T ss_dssp EECSTTC-----------CHHHHHHHHHHT-TEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCC-----------CHHHHHHHHHHC-CcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9998643 678899999877 999999998853 5799999998 78999999999999987653
No 2
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=100.00 E-value=1e-58 Score=466.68 Aligned_cols=394 Identities=16% Similarity=0.214 Sum_probs=333.5
Q ss_pred CCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccccCccccccccCCchHHHHHHHHHHHHhcCCCe
Q 012124 20 HSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSV 96 (470)
Q Consensus 20 g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (470)
|+||||+|+||++|+|||+| ||++|.+ |++++ +|+++.. .. . .+++
T Consensus 1 g~~lps~r~la~~l~vs~~tv~~a~~~l~~-~~~~~----~~~~~~~--------------------~~-----~-~~~~ 49 (430)
T 2x5f_A 1 GAMNPLAQSLNEQLQQSNATAFAMLSDLGQ-NMFYP----KGILSQS--------------------AE-----A-KSTT 49 (430)
T ss_dssp --CCHHHHHHHHHHHHHCHHHHHHCCHHHH-HCCCC----CHHHHHH--------------------HH-----T-TTCS
T ss_pred CCCChhhhhHHHHHHhhhhHHHHHHhhhhh-hccCc----hHHHHHH--------------------Hh-----c-CCCc
Confidence 89999999999999999999 9999998 88753 5655411 00 0 2467
Q ss_pred EEccCCCC-CCCChHHH--HHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCc---EEEecChHHHHHH
Q 012124 97 IRLAAGEP-DFDTPVLI--AEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQ---ILVSNGAKQSILQ 169 (470)
Q Consensus 97 i~l~~g~~-~~~~~~~~--~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~---i~it~g~~~al~~ 169 (470)
|||+.|.| ++..++.+ .+++.+.+.. ....|++..|..+||+++++++.+.. +.+++++ |++|+|+++++.+
T Consensus 50 i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~~~~i~~t~g~~~al~~ 128 (430)
T 2x5f_A 50 YNATIGMATNKDGKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDN-PELSIDNMSRPIVTNALTHGLSL 128 (430)
T ss_dssp EECCCSSCEETTEECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHC-TTCCGGGBCCCEEESHHHHHHHH
T ss_pred EEeeeeeccCCCCchhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccC-cccCCCccceEEEcCCchHHHHH
Confidence 99999999 88776655 7776666544 46789888899999999999998764 6678889 9999999999999
Q ss_pred HHHHhcCCCCeEEEcCCCCCChHHHHHH-cCCEEEEecCcCCCCCccCHHhHhhhccC---CceEEEEcCCCCCcccCCC
Q 012124 170 AVLAVCSPGDEVIIPAPFWVSYPEMARI-ADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYP 245 (470)
Q Consensus 170 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~i~l~~p~nPtG~~~s 245 (470)
++++++++||+|++++|+|+++...++. .|++++.++++.++ +.+|++.|++++++ +++++++++||||||.++|
T Consensus 129 ~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~ 207 (430)
T 2x5f_A 129 VGDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKD-GHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPT 207 (430)
T ss_dssp HHHHHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTT-SCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCC
T ss_pred HHHHHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCcc-CCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCC
Confidence 9999999999999999999999999999 99999999997543 67999999999976 7899999999999999999
Q ss_pred HHHHHHHHHHHHh-----CCCEEEEEeccccccccCCCCccccc-ccCCCCCc---eEEEeccCcccccccceeeEEEc-
Q 012124 246 KNLLDEIARIVAK-----HPRLLVLSDEIYEHIIYAPATHTSFA-SLPGMWER---TLTVNGFSKAFAMTGWRLGYIAG- 315 (470)
Q Consensus 246 ~~~~~~l~~~~~~-----~~~~~iI~Dd~~~~~~~~~~~~~~~~-~~~~~~~~---~i~i~S~sK~~~~~G~r~G~~~~- 315 (470)
.+++++|+++|++ | |++||+||+|.++.+++....++. .++...++ +++++||||.+|++|+|+||+++
T Consensus 208 ~~~l~~i~~~~~~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~ 286 (430)
T 2x5f_A 208 HKEVTTIVEAIKALANKGT-KVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFG 286 (430)
T ss_dssp HHHHHHHHHHHHHHHHTTC-EEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEB
T ss_pred HHHHHHHHHHHHhhhhccC-CEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEe
Confidence 9999999999999 9 999999999999988765444554 55433467 89999999999889999999999
Q ss_pred --CHHHHHHHHHHhhh----ccCCCChHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHHHHHhc----cCCCCeecC
Q 012124 316 --PKHFVAACNKIQSQ----FTSGASSISQKAGVAALG-LGYAGGEVVSKMVKAFRERRDFLVKSFG----ELEGVKMSE 384 (470)
Q Consensus 316 --~~~~~~~l~~~~~~----~~~~~~~~~q~a~~~~l~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~g~~~~~ 384 (470)
++++++.+...... ..++++.+.|.++.++|+ ++.+ .++++++++.++++++.+.+.|+ +. |+.+..
T Consensus 287 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~ 364 (430)
T 2x5f_A 287 TSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQF-DKEIEQNIQTLKERYEVTKEVVYADQYHS-HWQAYD 364 (430)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHHHHHHHHHTCGGGTT-TEEECC
T ss_pred cCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CceeeC
Confidence 99999998876655 567899999999999998 7422 34455599999999999999998 55 788888
Q ss_pred CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee-cCHHHHHHHHHHHHHHHHh
Q 012124 385 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA-ASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 385 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~-~~~~~i~~~l~~l~~~l~~ 463 (470)
+.+|+|+|++++ .. +..++++.|++++||.+.|| .++++|++++ .+++++++++++|++++++
T Consensus 365 ~~~g~~~~~~~~-~~-----------~~~~~~~~l~~~~gi~v~~g----~~~~iRis~~~~~~e~i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 365 FNSGYFMAIKVH-DV-----------DPEALRKHLIDKYSIGVIAL----NATDIRIAFSCVEKDDIPHVFDSIAKAIDD 428 (430)
T ss_dssp CCBSSEEEEEES-SS-----------CHHHHHHHHHHHHCEECEEC----SSSEEEEEGGGSCGGGHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCC-CC-----------CHHHHHHHHHHhCCEEEecC----CCCeEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 899999999998 32 77889999887459999998 3579999999 5889999999999999987
Q ss_pred hC
Q 012124 464 LR 465 (470)
Q Consensus 464 ~~ 465 (470)
++
T Consensus 429 ~~ 430 (430)
T 2x5f_A 429 LR 430 (430)
T ss_dssp HC
T ss_pred cC
Confidence 53
No 3
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=100.00 E-value=9.1e-56 Score=438.68 Aligned_cols=377 Identities=43% Similarity=0.716 Sum_probs=335.1
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 146 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~ 146 (470)
+++++...+++....+.....+....++++|+|+.|+|++++|+.+.+++.+.+......|++..|..+||+++++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~ 83 (385)
T 1b5p_A 4 LSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRR 83 (385)
T ss_dssp CCHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhhHHhhcCcchHHHHHHHHHHHHhcCCCEEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 45566677777777777777777667788999999999988889999999998877677898888999999999999998
Q ss_pred HcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC
Q 012124 147 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 147 ~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
.+|+.+++++|++|+|+++++.+++.++++|||+|++++|+|+.+...++..|++++.+++++++++.+|++.|++++++
T Consensus 84 ~~g~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 163 (385)
T 1b5p_A 84 ENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP 163 (385)
T ss_dssp TTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCT
T ss_pred HhCCCCChHHEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCC
Confidence 88988889999999999999999999999999999999999999999999999999999997656778999999999988
Q ss_pred CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccc
Q 012124 227 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~ 306 (470)
++++|++++||||||.++|.+++++|+++|++| |++||+||+|+++.+++ ...++.++++ +++++++||||.+|++
T Consensus 164 ~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~-~~~~~~~~~~--~~~i~~~s~SK~~~~~ 239 (385)
T 1b5p_A 164 RTKALVVNSPNNPTGAVYPKEVLEALARLAVEH-DFYLVSDEIYEHLLYEG-EHFSPGRVAP--EHTLTVNGAAKAFAMT 239 (385)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBSSS-CCCCGGGTCT--TTEEEEEESTTTTTCG
T ss_pred CCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHc-CCEEEEEccchhcccCC-CCCCHHHcCC--CCEEEEEechhhcCCc
Confidence 899999999999999999999999999999999 99999999999998876 4556666654 7899999999999999
Q ss_pred cceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec
Q 012124 307 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL---GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 383 (470)
Q Consensus 307 G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 383 (470)
|+|+||+++++++++.+...+.....+++.+.|.++.++|+. + .+++++.++.++++++.+.+.|+++ |+.+.
T Consensus 240 G~RiG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 315 (385)
T 1b5p_A 240 GWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEAS---RAFVEMAREAYRRRRDLLLEGLTAL-GLKAV 315 (385)
T ss_dssp GGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC
T ss_pred ccceEEEEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcc---hHHHHHHHHHHHHHHHHHHHHHHHC-CCeec
Confidence 999999999999999998887777778999999999999964 3 5678899999999999999999988 88888
Q ss_pred CCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 384 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 384 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
.|.+++|+|+.++.. + .+..++++.|. ++||.+.||..|+.++++|||++.+++++++++++|+++++
T Consensus 316 ~~~~~~~~~~~~~~~-~---------~~~~~l~~~l~-~~gv~v~~g~~f~~~~~iRis~~~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 316 RPSGAFYVLMDTSPI-A---------PDEVRAAERLL-EAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVLG 383 (385)
T ss_dssp CCSBTTEEEEECTTT-C---------SSHHHHHHHHH-HTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGGGC-
T ss_pred CCCeeEEEEEecCCC-C---------CCHHHHHHHHH-HCCeEEecccccCCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence 899999999998631 0 16788999888 55999999999987889999999989999999999987764
No 4
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=100.00 E-value=1.7e-53 Score=422.82 Aligned_cols=383 Identities=46% Similarity=0.801 Sum_probs=337.0
Q ss_pred cccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHH
Q 012124 68 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEE 147 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~ 147 (470)
++++...+++....+.....+....|+++|+|+.|.|++++|+.+.+++.+.+......|++..|..++|+++++++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~ 83 (388)
T 1j32_A 4 AARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRD 83 (388)
T ss_dssp CHHHHTSCCCSSTTTHHHHHHHHTTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHH
T ss_pred hhHhHhCCccHHHHHHHHHHHHHhcCCCEEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 34455555555556666666666678899999999998888899999999998776778988889999999999999988
Q ss_pred cCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCC
Q 012124 148 NGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK 227 (470)
Q Consensus 148 ~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 227 (470)
+|.++++++|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.++.+.++++.+|++.|+++++++
T Consensus 84 ~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 163 (388)
T 1j32_A 84 NGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPK 163 (388)
T ss_dssp HCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTT
T ss_pred cCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcC
Confidence 89888889999999999999999999999999999999999999999999999999999976556779999999999888
Q ss_pred ceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC-CCceEEEeccCcccccc
Q 012124 228 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMT 306 (470)
Q Consensus 228 ~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~S~sK~~~~~ 306 (470)
+++|++++|+||||.++|.+++++|+++|++| |++||+||+|+++.+++....++..++.. .++++++.||||.+|++
T Consensus 164 ~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~ 242 (388)
T 1j32_A 164 TKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEA-GLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMT 242 (388)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCT
T ss_pred ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCc
Confidence 99999999999999999999999999999999 99999999999998876555566666431 46899999999999889
Q ss_pred cceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC
Q 012124 307 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 386 (470)
Q Consensus 307 G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 386 (470)
|+|+||+++++++++.+........++++.+.|.++.++|+. ..++++++++.++++++++.+.|++++|+.+..+.
T Consensus 243 G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 319 (388)
T 1j32_A 243 GWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYEN---SQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPD 319 (388)
T ss_dssp TTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHS---CSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCC
T ss_pred ccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCC
Confidence 999999999999999998887777788999999999999985 36789999999999999999999998899888888
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~ 464 (470)
+++++|++++.. + .+..++++.|++++||.+.||..|+.++++|++++.+++++++++++|+++++++
T Consensus 320 ~~~~~~~~~~~~-~---------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 320 GAFYMFPSIAKT-G---------RSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp BTTEECCBCGGG-T---------CCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEecCCC-C---------CCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 999999988641 0 1678899988875699999999888789999999989999999999999998765
No 5
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=100.00 E-value=1.7e-52 Score=416.04 Aligned_cols=374 Identities=26% Similarity=0.424 Sum_probs=326.1
Q ss_pred cccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcC
Q 012124 70 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENG 149 (470)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g 149 (470)
++..+.++....+.+.+.+...+|+++|+|+.|.+++++|+.+++++.+++.+....|++..|..++|+++++++.+.+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g 86 (391)
T 3h14_A 7 SRSAVDPFIVMDVMEAARRAEEAGRRIIHMEVGQPGTGAPRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYG 86 (391)
T ss_dssp STTCCCCCTTHHHHHHHHHHHHTTCCCEECCCSSCSSCSCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHC
T ss_pred hHhhcCcchHHHHHHHHHHHHhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhC
Confidence 56677777888888888888889999999999999998899999999999877678898889999999999999999999
Q ss_pred CCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCce
Q 012124 150 LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSR 229 (470)
Q Consensus 150 ~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 229 (470)
+++++++|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.++++.++++.+|++.|+++ +++
T Consensus 87 ~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~---~~~ 163 (391)
T 3h14_A 87 VDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL---DLA 163 (391)
T ss_dssp CCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS---CCS
T ss_pred CCCCHHHEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc---CCe
Confidence 98999999999999999999999999999999999999999999999999999999998777788999999987 789
Q ss_pred EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccce
Q 012124 230 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 309 (470)
Q Consensus 230 ~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r 309 (470)
+|++++||||||.+++.+++++|+++|++| |++||+||+|.++.+++. ..++..+ .+++++++||||.+|++|+|
T Consensus 164 ~v~i~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~-~~~~~~~---~~~~i~~~s~sK~~g~~G~r 238 (391)
T 3h14_A 164 GLMVASPANPTGTMLDHAAMGALIEAAQAQ-GASFISDEIYHGIEYEAK-AVTALEL---TDECYVINSFSKYFSMTGWR 238 (391)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBSSSC-CCCGGGT---CSSSEEEEESSSTTCCTTSC
T ss_pred EEEECCCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEECcchhcccCCC-CcChhhc---CCCEEEEEechhccCCccce
Confidence 999999999999999999999999999999 999999999999888764 2333333 47899999999999999999
Q ss_pred eeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceE
Q 012124 310 LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAF 389 (470)
Q Consensus 310 ~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~ 389 (470)
+||+++++++++.+........++++.+.|.++.++++. .+++++.++.++++++.+.+.|++++...+..+.+++
T Consensus 239 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 314 (391)
T 3h14_A 239 VGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALDC----DAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAF 314 (391)
T ss_dssp CEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBTT
T ss_pred eEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhCC----hHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCeeE
Confidence 999999999999999888888888999999999888872 7889999999999999999999988333446788889
Q ss_pred EEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 390 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
++|++++... .+..++++.|++++||.+.||..|+. ++++|++++.+++++++++++|++++++..
T Consensus 315 ~~~~~~~~~~----------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~~~~~~ 383 (391)
T 3h14_A 315 YVYADVSDLT----------DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAFMQARG 383 (391)
T ss_dssp EEEEECTTTC----------SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHHHHHHHHHC-
T ss_pred EEEEecCccC----------CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhc
Confidence 9999987521 16788999988877999999999976 579999999999999999999999998754
No 6
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=100.00 E-value=2.8e-52 Score=414.13 Aligned_cols=380 Identities=42% Similarity=0.666 Sum_probs=330.3
Q ss_pred cccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHH
Q 012124 68 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEE 147 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~ 147 (470)
+.+...++++....+.+... ..+++|+|+.|.+++++++.+.+++.+.+......|++..|..++|+++++++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~----~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~ 79 (389)
T 1gd9_A 4 SDRLELVSASEIRKLFDIAA----GMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQ 79 (389)
T ss_dssp HHHHHHSCCCHHHHHHHHHH----TCSSCEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHH
T ss_pred hhHhHhCChhHHHHHHHHHh----hhcCeEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 44555666666665554433 22578999999998888899999999998876678988889999999999999988
Q ss_pred cCCCCCCCc-EEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC
Q 012124 148 NGLSYTPDQ-ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 148 ~g~~~~~~~-i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
+|+++++++ |++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.+|++.++++.+|++.|++++++
T Consensus 80 ~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 159 (389)
T 1gd9_A 80 NGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD 159 (389)
T ss_dssp HCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCT
T ss_pred hCCCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCc
Confidence 898788899 9999999999999999999999999999999999999999999999999997655677999999999988
Q ss_pred CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccc
Q 012124 227 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~ 306 (470)
++++|++++||||||.++|.+++++|+++|++| |++||+||+|.++.+++....++..+++..+++++++||||.+|++
T Consensus 160 ~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 238 (389)
T 1gd9_A 160 KTRALIINSPCNPTGAVLTKKDLEEIADFVVEH-DLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMT 238 (389)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCG
T ss_pred CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCc
Confidence 899999999999999999999999999999999 9999999999998887654556666654357899999999999889
Q ss_pred cceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC
Q 012124 307 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 386 (470)
Q Consensus 307 G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 386 (470)
|+|+||+++++++++.+........++++.+.|.++.++|+.+.. +++++++++.++++++.+.+.|+++ |+++..+.
T Consensus 239 G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 316 (389)
T 1gd9_A 239 GWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERS-WKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPK 316 (389)
T ss_dssp GGCCEEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCC
T ss_pred ccceEEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCC
Confidence 999999999999999998887777788999999999999986311 2388999999999999999999988 88888888
Q ss_pred ceEEEeeeccC-ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 387 GAFYLFIDFST-YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 387 ~g~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
+|+++|++++. .. +..++++.|++++||.+.||..|+. ++++|++++.+++++++++++|++++++
T Consensus 317 ~~~~~~~~~~~~~~-----------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 317 GAFYIFPRIRDTGL-----------TSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp BTTEECCBCGGGTC-----------CHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred eeeEEEEeccCCCC-----------CHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 99999999874 21 6788999888566999999998874 5799999999999999999999999987
Q ss_pred hC
Q 012124 464 LR 465 (470)
Q Consensus 464 ~~ 465 (470)
.+
T Consensus 386 ~~ 387 (389)
T 1gd9_A 386 RK 387 (389)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 7
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=100.00 E-value=2e-52 Score=418.37 Aligned_cols=387 Identities=26% Similarity=0.409 Sum_probs=323.3
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLK 145 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l~ 145 (470)
++.++..++++....+.........+|+++|||+.|.|++.+++.+.+++.+++... ...|++..|..+||+++++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~ 89 (412)
T 2x5d_A 10 RFARIDRLPPYVFNITAELKMAARRRGEDIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYR 89 (412)
T ss_dssp -----------CHHHHHHHHHHHHHTTCCCEECSSCCCCSCCCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHH
T ss_pred hhHHHhhcCchHHHHHHHHHHHHhhcCCCEEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHH
Confidence 445556666666666666666566778899999999998888899999998887653 5679888999999999999999
Q ss_pred HHcCCCCCC-CcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhc
Q 012124 146 EENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL 224 (470)
Q Consensus 146 ~~~g~~~~~-~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l 224 (470)
+.+|+++++ ++|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.+|++.++++.+|++.|++++
T Consensus 90 ~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i 169 (412)
T 2x5d_A 90 DRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRES 169 (412)
T ss_dssp HHHCCCCCTTTSEEEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTE
T ss_pred HHhCCCCCCCcCEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhc
Confidence 888987888 7999999999999999999999999999999999999999999999999999976546668999999999
Q ss_pred cCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccc
Q 012124 225 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 304 (470)
Q Consensus 225 ~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~ 304 (470)
++++++|++++||||||.++|.+++++|+++|++| |++||+||+|.++.+++....++..++...+++++++||||.+|
T Consensus 170 ~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~ 248 (412)
T 2x5d_A 170 IPKPRMMILGFPSNPTAQCVELDFFERVVALAKQY-DVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYN 248 (412)
T ss_dssp ESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCS
T ss_pred ccCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHc-CCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccC
Confidence 88899999999999999999999999999999999 99999999999998866555666666543578999999999998
Q ss_pred cccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC
Q 012124 305 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 384 (470)
Q Consensus 305 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 384 (470)
++|+|+||+++++++++.+........++++.+.|.++.++|+. .+++++++++.++++++.+.+.|+++ |+.+..
T Consensus 249 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 324 (412)
T 2x5d_A 249 MAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEG---DQQCVRDIARQYQQRRDVLVKGLREA-GWMVEN 324 (412)
T ss_dssp CTTSCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHS---CSHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCC
T ss_pred CcccceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHC-CCEecC
Confidence 89999999999999999998887777788999999999999986 36789999999999999999999988 888888
Q ss_pred CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 385 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 385 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
+.+|+|+|+++|..++ ..+..++++.|++++||.+.||..|+. ++++||+++.+++++++++++|+++++
T Consensus 325 ~~~g~~~~~~~~~~~~--------~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~ 396 (412)
T 2x5d_A 325 PKASMYVWAKIPEPYA--------HLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKAMFR 396 (412)
T ss_dssp CSBSSEEEEECCTTTG--------GGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred CCeeeEEEEEcCCccC--------CCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 8899999999974310 004678888887766999999998863 579999999999999999999999998
Q ss_pred hhCC
Q 012124 463 TLRP 466 (470)
Q Consensus 463 ~~~~ 466 (470)
++..
T Consensus 397 ~~~~ 400 (412)
T 2x5d_A 397 ADGL 400 (412)
T ss_dssp HTTC
T ss_pred hcCC
Confidence 7653
No 8
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-53 Score=426.35 Aligned_cols=381 Identities=23% Similarity=0.426 Sum_probs=322.7
Q ss_pred cCCchHHHHHHHHHHH----HhcCCCeEEccCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHc
Q 012124 74 VKPSKTVAITDQATAL----AQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEEN 148 (470)
Q Consensus 74 ~~~~~~~~~~~~~~~~----~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~ 148 (470)
..++....+.+..... ...++++|+|+.|.|++++|+.+.+++.+++.. ....|++..|..+||+++++++.+.+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~ 112 (447)
T 3b46_A 33 TAKDVWSLTNEAAAKAANNSKNQGRELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIY 112 (447)
T ss_dssp CCCCHHHHHHHHHHHHCCC---TTSCCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTT
T ss_pred cCccHHHHHHHHHHhhccchhccCCCeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 4455555555444333 225678999999999998899999999998865 45789888899999999999999888
Q ss_pred CCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCC----------CCccCHH
Q 012124 149 GLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE----------NFLLDPK 218 (470)
Q Consensus 149 g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~----------~~~~d~~ 218 (470)
|..+++++|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.+++++++ ++.+|++
T Consensus 113 g~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~ 192 (447)
T 3b46_A 113 NTELKAENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFE 192 (447)
T ss_dssp TSCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHH
T ss_pred CCCCChhhEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHH
Confidence 888888999999999999999999999999999999999999999999999999999987543 5789999
Q ss_pred hHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccccc-CCCCCceEEEe
Q 012124 219 VLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVN 297 (470)
Q Consensus 219 ~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~ 297 (470)
.|++++++++++|++++||||||.++|.+++++|+++|++| |++||+||+|.++.|++ ...++..+ .+..+++++++
T Consensus 193 ~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~-~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~~i~i~ 270 (447)
T 3b46_A 193 QFEKAITSKTKAVIINTPHNPIGKVFTREELTTLGNICVKH-NVVIISDEVYEHLYFTD-SFTRIATLSPEIGQLTLTVG 270 (447)
T ss_dssp HHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCSS-CCCCGGGSCHHHHTTEEEEE
T ss_pred HHHHhhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHc-CcEEEEeccchhcccCC-CCcCHHHcCCCCCCcEEEEe
Confidence 99999988999999999999999999999999999999999 99999999999998876 34455555 22257899999
Q ss_pred ccCcccccccceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 012124 298 GFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 376 (470)
Q Consensus 298 S~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 376 (470)
||||.++++|+|+||+++ ++++++.+........++++++.|.++.++|+.+.. +++++++++.++++++++.+.|++
T Consensus 271 S~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 349 (447)
T 3b46_A 271 SAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALK-IGYFEKMRQEYINKFKIFTSIFDE 349 (447)
T ss_dssp EHHHHTTCTTSCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchhcCCcchhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcc-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999989999999999 999999998877777788999999999999986422 577899999999999999999998
Q ss_pred CCCCeecCCCceEEEeeeccCccCCccc-----CCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------CCcEEEEee
Q 012124 377 LEGVKMSEPQGAFYLFIDFSTYYGSEAE-----GFGKIENSESLCRYLLDKAQVALVPGDAFGD-------DTCIRISYA 444 (470)
Q Consensus 377 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-------~~~iRls~~ 444 (470)
+ |+.+..|.+|+|+|++++... .... ..+...+..+++++|++++||.+.||..|+. ++++||+++
T Consensus 350 ~-g~~~~~~~~g~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~ 427 (447)
T 3b46_A 350 L-GLPYTAPEGTYFVLVDFSKVK-IPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVC 427 (447)
T ss_dssp H-TCCEECCSBSSEEEEECTTCC-CCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECC
T ss_pred C-CCeecCCCeeEEEEEeccccc-CccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEe
Confidence 8 888888999999999987520 0000 0000014568888888767999999998864 579999999
Q ss_pred cCHHHHHHHHHHHHH
Q 012124 445 ASLTTLQAAVERIKK 459 (470)
Q Consensus 445 ~~~~~i~~~l~~l~~ 459 (470)
.++++|++++++|++
T Consensus 428 ~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 428 KDDAYLENAVERLKL 442 (447)
T ss_dssp SCHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999987
No 9
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=100.00 E-value=4e-52 Score=417.56 Aligned_cols=389 Identities=28% Similarity=0.509 Sum_probs=334.7
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCC--CCCCCCcCcHHHHHHHHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGF--TRYTPNAGTLELRSAICHKL 144 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~--~~y~~~~g~~~lr~~ia~~l 144 (470)
++.++..++++....+.+.. .++++|+|+.|.|++++|+.+.+++.+++.... ..|++..|..++|+++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~ 80 (422)
T 3fvs_A 6 QARRLDGIDYNPWVEFVKLA-----SEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFF 80 (422)
T ss_dssp SCGGGTTCCCCHHHHHHHHH-----HTSCCEECCCSSCSSCCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHH
T ss_pred HHHHhhccCccHHHHHHHHh-----hcCCceEeCCCCCCCCCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHH
Confidence 45566667777666554432 345789999999999999999999999988753 78988889999999999999
Q ss_pred HHHcCCCCCC-CcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcC----C------CCC
Q 012124 145 KEENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI----S------ENF 213 (470)
Q Consensus 145 ~~~~g~~~~~-~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~----~------~~~ 213 (470)
.+.+|+++++ ++|++|+|+++++..++..++++||+|++++|+|+++...++..|.+++.++++. + +++
T Consensus 81 ~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~ 160 (422)
T 3fvs_A 81 GELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNW 160 (422)
T ss_dssp HHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGS
T ss_pred HHhhCCCCCCCCcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCC
Confidence 9999998888 7999999999999999999999999999999999999999999999999999975 2 356
Q ss_pred ccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCce
Q 012124 214 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 293 (470)
Q Consensus 214 ~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (470)
.+|++.|++++++++++|++++||||||.++|.+++++|+++|++| |++||+||+|.++.+++....++..++...+++
T Consensus 161 ~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (422)
T 3fvs_A 161 QLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQH-DVVCITDEVYQWMVYDGHQHISIASLPGMWERT 239 (422)
T ss_dssp BCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGE
T ss_pred CCCHHHHHhhcCCCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHc-CcEEEEEccchhhccCCCCCCChhhcccccCcE
Confidence 7899999999998999999999999999999999999999999999 999999999999999877677777776556899
Q ss_pred EEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHHHH
Q 012124 294 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL-----GYAGGEVVSKMVKAFRERRD 368 (470)
Q Consensus 294 i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~-----~~~~~~~~~~~~~~~~~~~~ 368 (470)
++++||||.+|++|+|+||+++++++++.+........++++++.|.++..+++. +.. .++++++++.++++++
T Consensus 240 i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~ 318 (422)
T 3fvs_A 240 LTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQP-SSYFVQFPQAMQRCRD 318 (422)
T ss_dssp EEEEEHHHHHTCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCT-TCHHHHHHHHHHHHHH
T ss_pred EEEecchhccCCccceEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccch-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888777888999999999999974 333 6789999999999999
Q ss_pred HHHHHhccCCCCeecCCCceEEEeeeccCccCCcc--cCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------CCcE
Q 012124 369 FLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEA--EGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------DTCI 439 (470)
Q Consensus 369 ~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-------~~~i 439 (470)
.+.+.|+++ |+.+..|.+++|+|++++....... ..........++++.|++++||.+.||..|+. .+++
T Consensus 319 ~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~i 397 (422)
T 3fvs_A 319 HMIRSLQSV-GLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYI 397 (422)
T ss_dssp HHHHHHHTT-TCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEE
T ss_pred HHHHHHHHc-CCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeE
Confidence 999999998 8998889999999998865210000 00000000568888888777999999998853 5899
Q ss_pred EEEeecCHHHHHHHHHHHHHHHHh
Q 012124 440 RISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 440 Rls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
|++++.+++++++++++|++++++
T Consensus 398 Ris~~~~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 398 RFCFVKDEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp EEECCCCHHHHHHHHHHHHHHHHC
T ss_pred EEEecCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999875
No 10
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=8.6e-52 Score=410.67 Aligned_cols=373 Identities=38% Similarity=0.667 Sum_probs=329.8
Q ss_pred cccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHH
Q 012124 68 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEE 147 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~ 147 (470)
++++...+++.+..+.....+....|+++|+|+.|.|++++++.+.+++.+.+......|++..|..+||+++++++.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~ 94 (389)
T 1o4s_A 15 SRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGER 94 (389)
T ss_dssp CHHHHHSCCCSSHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhhcCccHHHHHHHHHHHHHhcCCCEEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 44566677777777777777766678899999999998888899999999998766678988889999999999999988
Q ss_pred cCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCC
Q 012124 148 NGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK 227 (470)
Q Consensus 148 ~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 227 (470)
+|+++++++|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.+|++.++++.+|++.|+++++++
T Consensus 95 ~g~~~~~~~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 174 (389)
T 1o4s_A 95 YKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGK 174 (389)
T ss_dssp HTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTT
T ss_pred hCCCCCHHHEEEecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccC
Confidence 89888899999999999999999999999999999999999999999999999999999976556789999999999888
Q ss_pred ceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccc
Q 012124 228 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 307 (470)
Q Consensus 228 ~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G 307 (470)
+++|++++|+||||.++|.+++++|+++|+++ |++||+||+|.++.+++ ...++..++...+++++++||||.+|++|
T Consensus 175 ~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~Dea~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 252 (389)
T 1o4s_A 175 TKAVLINSPNNPTGVVYRREFLEGLVRLAKKR-NFYIISDEVYDSLVYTD-EFTSILDVSEGFDRIVYINGFSKSHSMTG 252 (389)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTSBCSS-CCCCHHHHCSSSTTEEEEEESTTTTTCGG
T ss_pred ceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEEccccccccCC-CCCCHhhcCCCCCcEEEEeechhhcCCcc
Confidence 99999999999999999999999999999999 99999999999988765 33455555433578999999999998899
Q ss_pred ceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc
Q 012124 308 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG 387 (470)
Q Consensus 308 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 387 (470)
+|+||+++++++++.+........++++.+.|.++.++|+.+ ++++++.++++++.+.+.|+++ |+.+..+.+
T Consensus 253 ~r~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 325 (389)
T 1o4s_A 253 WRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD------NSYMVQTFKERKNFVVERLKKM-GVKFVEPEG 325 (389)
T ss_dssp GCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSB
T ss_pred cceEEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHhc-CCeeecCCc
Confidence 999999999999999988877777788999999999998763 5677888999999999999988 888888889
Q ss_pred eEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 388 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 388 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
|+++|++++ . +..++.+.|++++||.+.||..|+.++++|++++.+++++++++++|+++++
T Consensus 326 ~~~~~~~~~-~------------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 326 AFYLFFKVR-G------------DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLN 387 (389)
T ss_dssp SSEEEEECS-S------------CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCC-C------------CHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 999999987 2 6788999887555999999998887789999999999999999999999875
No 11
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=100.00 E-value=2e-51 Score=409.25 Aligned_cols=372 Identities=25% Similarity=0.430 Sum_probs=317.4
Q ss_pred cccccccc--CCchHHHHHHHHHHHHh--cCCCeEEccCCCCCCCChHHHHHHHHHHHHcC----CCCCCCCcCcHHHHH
Q 012124 67 LSPRVNAV--KPSKTVAITDQATALAQ--AGVSVIRLAAGEPDFDTPVLIAEAGINAIREG----FTRYTPNAGTLELRS 138 (470)
Q Consensus 67 ~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~----~~~y~~~~g~~~lr~ 138 (470)
++.+...+ .++...++.....+... .++++|+|+.|.|++++++.+.+++.+.+.+. ...|++..|..+||+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~ 83 (398)
T 3ele_A 4 VNESMYQLGSVRSAIRELFEYGKKRAAIVGKENVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRA 83 (398)
T ss_dssp SCHHHHHHHHCCCHHHHHHHHHHHHHHHHCGGGCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHH
T ss_pred hhHHHhccccCchhHHHHHHHHHHHHhhcCCCCeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHH
Confidence 45556665 45666666665555443 34678999999999888999999999998764 578988999999999
Q ss_pred HHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCC-CeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCH
Q 012124 139 AICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP 217 (470)
Q Consensus 139 ~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 217 (470)
++++++.+.+|+++++++|++|+|+++++..++++++++| |+|++++|+|+++...++..|++++.+|++. +++.+|+
T Consensus 84 ~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~~~~~d~ 162 (398)
T 3ele_A 84 AIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPADT-EHFQIDF 162 (398)
T ss_dssp HHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCT-TTSSCCH
T ss_pred HHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCC-cCCcCCH
Confidence 9999999999988899999999999999999999999999 9999999999999999999999999999975 3678999
Q ss_pred HhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHh------CCCEEEEEeccccccccCCCCcccccccCCCCC
Q 012124 218 KVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK------HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 291 (470)
Q Consensus 218 ~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~------~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~ 291 (470)
|.|+++++++++++++++||||||.+++.+++++|+++|++ | |++||+||+|.++.+++...+.+... .+
T Consensus 163 ~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~---~~ 238 (398)
T 3ele_A 163 DALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGR-PIFIIADEPYREIVYDGIKVPFVTKY---YD 238 (398)
T ss_dssp HHHHHTCCTTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTS-CCEEEEECTTTTCBCTTCCCCCGGGT---CS
T ss_pred HHHHHHhCcCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCC-CeEEEEeccccccccCCCCcCChHhh---cC
Confidence 99999999899999999999999999999999999999999 9 99999999999998876443333322 47
Q ss_pred ceEEEeccCcccccccceeeEEEcCHHH------HHHHHHHhhh-ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 012124 292 RTLTVNGFSKAFAMTGWRLGYIAGPKHF------VAACNKIQSQ-FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 364 (470)
Q Consensus 292 ~~i~i~S~sK~~~~~G~r~G~~~~~~~~------~~~l~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~ 364 (470)
++++++||||.+|++|+|+||+++++++ .+.+...... ...+++.+.|.++..+++.+. .++.++
T Consensus 239 ~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--------~~~~~~ 310 (398)
T 3ele_A 239 NTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG--------DINAYK 310 (398)
T ss_dssp SEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC--------CHHHHH
T ss_pred CeEEEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH--------HHHHHH
Confidence 8999999999999999999999998874 3344443333 256678899999888887532 356778
Q ss_pred HHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee
Q 012124 365 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 444 (470)
Q Consensus 365 ~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~ 444 (470)
++++++.+.|+++ |+.+..+.+++|+|++++.. +..++++.|. ++||.+.||..|+.++++|++++
T Consensus 311 ~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~-~~gi~v~~g~~~~~~~~iRis~~ 376 (398)
T 3ele_A 311 ENRDLLYEGLTRI-GYHCFKPDGAFYMFVKALED------------DSNAFCEKAK-EEDVLIVAADGFGCPGWVRISYC 376 (398)
T ss_dssp HHHHHHHHHHHHH-TCCEECCSBSSEEEEECSSS------------CHHHHHHHHH-TTTEECEESGGGTCTTEEEEECC
T ss_pred HHHHHHHHHHHHc-CCeecCCCeeEEEEEEcCCC------------CHHHHHHHHH-HCCEEEeCccccCCCCeEEEEec
Confidence 8889999999887 88888899999999999854 6788888775 55999999999988899999998
Q ss_pred cCHHHHHHHHHHHHHHHHhhC
Q 012124 445 ASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 445 ~~~~~i~~~l~~l~~~l~~~~ 465 (470)
.+++++++++++|++++++++
T Consensus 377 ~~~e~i~~~l~~l~~~l~~~~ 397 (398)
T 3ele_A 377 VDREMIKHSMPAFEKIYKKYN 397 (398)
T ss_dssp SCHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999998875
No 12
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=100.00 E-value=3.9e-52 Score=415.14 Aligned_cols=377 Identities=23% Similarity=0.379 Sum_probs=321.5
Q ss_pred cccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHHHH
Q 012124 68 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKE 146 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l~~ 146 (470)
+.++..++++....+...... ..|+++|+|+.|.+++.+++.+++++.+++... ...|++..|..+||+++++++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~--~~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~ 100 (404)
T 2o1b_A 23 SNKLANIPDSYFGKTMGRKIE--HGPLPLINMAVGIPDGPTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQR 100 (404)
T ss_dssp CHHHHTSCCCTTC-------C--CCSSCCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhHhhhCCchHHHHHHHHHHh--cCCCCEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 344555555544433322221 346678999999998888889999998887542 45787778999999999999998
Q ss_pred HcCCCCCC-CcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc
Q 012124 147 ENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 225 (470)
Q Consensus 147 ~~g~~~~~-~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 225 (470)
.+|.++++ ++|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.++++. +++.+|++.|+++++
T Consensus 101 ~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~ 179 (404)
T 2o1b_A 101 QYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEP-PHYLPDWSKVDSQII 179 (404)
T ss_dssp HHCCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECCT-TTCCCCGGGSCHHHH
T ss_pred HhCCCCCCcccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCc-ccCcCCHHHHHHhhc
Confidence 88988776 8999999999999999999999999999999999999999999999999999875 567789999999987
Q ss_pred CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccc
Q 012124 226 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 305 (470)
Q Consensus 226 ~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~ 305 (470)
+++++|++++|+||||.++|.+++++|+++|+++ |++||+||+|.++.+++ ...++..++...+++++++||||.+|+
T Consensus 180 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~g~ 257 (404)
T 2o1b_A 180 DKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGT-DTKIVHDFAYGAFGFDA-KNPSILASENGKDVAIEIYSLSKGYNM 257 (404)
T ss_dssp HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTS-SCEEEEECTTTTCBSSS-CCCCGGGSTTHHHHEEEEEESTTTTTC
T ss_pred cCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEccchhcccCC-CCCChhhcCCCCCCEEEEEecchhccC
Confidence 7889999999999999999999999999999999 99999999999988865 344555554334789999999999988
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC
Q 012124 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 385 (470)
Q Consensus 306 ~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 385 (470)
+|+|+||+++++++++.+........++++.+.|.++.++|+.+ +++++++++.++++++.+.+.|+++ |+.+..+
T Consensus 258 ~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 333 (404)
T 2o1b_A 258 SGFRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHY---DDFLEEQSNVFKTRRDRFEAMLAKA-DLPFVHA 333 (404)
T ss_dssp GGGCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHT-TCCEECC
T ss_pred chhheEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhc-CCeecCC
Confidence 99999999999999999988877777889999999999999863 7889999999999999999999988 8888888
Q ss_pred CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 386 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 386 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
.+|+|+|++++... +..+++++|++++||.+.||..|+. ++++||+++.+++++++++++|++++++
T Consensus 334 ~~g~~~~~~~~~~~-----------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 334 KGGIYVWLETPPGY-----------DSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp CBSSEEEEECCTTC-----------CHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCSCTTHHHHHHHHHHGGGGG
T ss_pred CcceEEEEeCCCCC-----------CHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 89999999997542 6778998888666999999998874 6799999999888999999999998876
Q ss_pred h
Q 012124 464 L 464 (470)
Q Consensus 464 ~ 464 (470)
+
T Consensus 403 ~ 403 (404)
T 2o1b_A 403 Y 403 (404)
T ss_dssp G
T ss_pred h
Confidence 4
No 13
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=100.00 E-value=8.9e-52 Score=411.45 Aligned_cols=371 Identities=22% Similarity=0.366 Sum_probs=321.0
Q ss_pred cccccCCchHHHHHHHHHHHH-hcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHc
Q 012124 70 RVNAVKPSKTVAITDQATALA-QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEEN 148 (470)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~ 148 (470)
++..+++++...+........ .+|+++|+|+.|+|++++|+.+.+++.+.+. ....|++..|..++|+++++++.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~-~~~~y~~~~g~~~lr~~la~~l~~~~ 83 (396)
T 3jtx_A 5 LLKQLKPYPFARLHEAMQGISAPEGMEAVPLHIGEPKHPTPKVITDALTASLH-ELEKYPLTAGLPELRQACANWLKRRY 83 (396)
T ss_dssp HHHHCCSCHHHHHHHHTTTCCCCTTCCCEECSCCSCCSCCCHHHHHHHHHTGG-GGGSCCCTTCCHHHHHHHHHHHHHHT
T ss_pred hhccCCCChHHHHHHHHHhhhhccCCCeEEeCCcCCCCCCCHHHHHHHHHHhh-hccCCCCCCCcHHHHHHHHHHHHHhc
Confidence 455566666665544433322 3577899999999999999999999998875 46789888999999999999999988
Q ss_pred CCC-CCCC-cEEEecChHHHHHHHHHHhcCCC-----CeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHh
Q 012124 149 GLS-YTPD-QILVSNGAKQSILQAVLAVCSPG-----DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLE 221 (470)
Q Consensus 149 g~~-~~~~-~i~it~g~~~al~~~~~~l~~~g-----d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~ 221 (470)
|++ ++++ +|++|+|+++++.+++++++++| |+|++++|+|+++...++..|++++.++++ ++++.+|++.|+
T Consensus 84 g~~~~~~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~g~~~d~~~l~ 162 (396)
T 3jtx_A 84 DGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCP-APSFNPDWRSIS 162 (396)
T ss_dssp TTCCCCTTTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECC-TTTCCCCGGGSC
T ss_pred CCCCCCCCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecC-CCCCccCHHHHH
Confidence 987 7888 99999999999999999999997 799999999999999999999999999994 456778999999
Q ss_pred hhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccc----cCCCCCceEEEe
Q 012124 222 SKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS----LPGMWERTLTVN 297 (470)
Q Consensus 222 ~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~----~~~~~~~~i~i~ 297 (470)
+++++++++|++++||||||.++|.+++++|+++|++| |++||+||+|.++.+++....+... +....+++++++
T Consensus 163 ~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 241 (396)
T 3jtx_A 163 EEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKY-GFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFT 241 (396)
T ss_dssp HHHHHTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-CCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEE
T ss_pred HhhccCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHc-CCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEe
Confidence 99988999999999999999999999999999999999 9999999999998887632322221 222358899999
Q ss_pred ccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC
Q 012124 298 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL 377 (470)
Q Consensus 298 S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 377 (470)
||||.++++|+|+||+++++++++.+.......+++++.+.|.++.++++. .+++++.++.++++++.+.+.|+++
T Consensus 242 s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~ 317 (396)
T 3jtx_A 242 SLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDD----EQHVIDNRRLYQEKFERVIPILQQV 317 (396)
T ss_dssp ESTTTSSCGGGCCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccccccCCcccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999889999999999999999999888877888999999999999985 6789999999999999999999876
Q ss_pred CCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--------CCcEEEEeecCHHH
Q 012124 378 EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--------DTCIRISYAASLTT 449 (470)
Q Consensus 378 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--------~~~iRls~~~~~~~ 449 (470)
+.+..+.+|+|+|++++.. +..++++.|++++||.+.||..|+. ++++||+++.++++
T Consensus 318 --~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~~~~~ 383 (396)
T 3jtx_A 318 --FDVKLPDASFYIWLKVPDG------------DDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVAT 383 (396)
T ss_dssp --SCCCCCSSSSEEEEECTTS------------CHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCSCHHH
T ss_pred --CCccCCCeeEEEEEECCCC------------CHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcCCHHH
Confidence 4556788899999999863 6788999887777999999998874 47999999999999
Q ss_pred HHHHHHHHHHHH
Q 012124 450 LQAAVERIKKGL 461 (470)
Q Consensus 450 i~~~l~~l~~~l 461 (470)
+++++++|++++
T Consensus 384 i~~~l~~l~~~l 395 (396)
T 3jtx_A 384 CVKAAEDIVSLY 395 (396)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 14
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=100.00 E-value=1.9e-51 Score=410.48 Aligned_cols=382 Identities=31% Similarity=0.521 Sum_probs=327.3
Q ss_pred CccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCC---CCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHH
Q 012124 66 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICH 142 (470)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~---~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~ 142 (470)
..++++..+.++....+. ...+...+|+++|+|+.|.| ++++++.+.+++.+.+......|++..|..++|+++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~ 89 (406)
T 1xi9_A 11 RASKRALSVEYAIRDVVL-PARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVE 89 (406)
T ss_dssp CCCHHHHTCCC--------CHHHHHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHH
T ss_pred hHHHHHhcCChhHHHHHH-HHHHHHHcCCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHH
Confidence 345667777777666666 66677777889999999999 77778999999999887666689888899999999999
Q ss_pred HHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhh
Q 012124 143 KLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLES 222 (470)
Q Consensus 143 ~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 222 (470)
++.+.+|+++++++|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.++++.++++.+|++.|++
T Consensus 90 ~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 169 (406)
T 1xi9_A 90 REKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRK 169 (406)
T ss_dssp HHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHH
T ss_pred HHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHH
Confidence 99998898889999999999999999999999999999999999999999999999999999998764567799999999
Q ss_pred hccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCc-eEEEeccCc
Q 012124 223 KLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER-TLTVNGFSK 301 (470)
Q Consensus 223 ~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~-~i~i~S~sK 301 (470)
++++++++|++++|+||||.++|.+++++|+++|++| |++||+||+|.++.+++ ...++..++ .++ +++++||||
T Consensus 170 ~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~-~~~li~De~~~~~~~~~-~~~~~~~~~--~~~~~i~~~s~sK 245 (406)
T 1xi9_A 170 KITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEY-EIPVISDEIYDLMTYEG-EHISPGSLT--KDVPVIVMNGLSK 245 (406)
T ss_dssp HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCCEEEECTTTTCBSSS-CCCCHHHHC--SSSCEEEEEESTT
T ss_pred hhCcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHc-CCEEEEEcCccccccCC-CCCCHHHcC--CCceEEEEecccc
Confidence 9988899999999999999999999999999999999 99999999999988743 334555554 477 899999999
Q ss_pred ccccccceeeEEE--cCH----HHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012124 302 AFAMTGWRLGYIA--GPK----HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 375 (470)
Q Consensus 302 ~~~~~G~r~G~~~--~~~----~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 375 (470)
.++++|+|+||++ +++ ++++.+....... ++++++.|.++.++|+.+ .++++++++.++++++++.+.|+
T Consensus 246 ~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~ 321 (406)
T 1xi9_A 246 VYFATGWRLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGP---MDYLKEYMKKLKERRDYIYKRLN 321 (406)
T ss_dssp TTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSC---CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCccEEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988999999999 999 9999998776655 778999999999999752 45688999999999999999999
Q ss_pred cCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHH
Q 012124 376 ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAA 453 (470)
Q Consensus 376 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~ 453 (470)
+++|+.+..+.+|+++|++++...+ .+..++++.|++++||.+.||..|+. ++++|++++.++++++++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~~~~~~i~~~ 392 (406)
T 1xi9_A 322 EIPGISTTKPQGAFYIFPKIEVGPW---------KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEA 392 (406)
T ss_dssp TSTTEECCCCCBSSEECCEECSCSC---------SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHH
T ss_pred hCCCCeeecCCeeEEEEEecCccCC---------CCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEecCCHHHHHHH
Confidence 9888888888899999998874100 16788988887556999999998875 689999999899999999
Q ss_pred HHHHHHHHHhhC
Q 012124 454 VERIKKGLLTLR 465 (470)
Q Consensus 454 l~~l~~~l~~~~ 465 (470)
+++|+++++++.
T Consensus 393 ~~~l~~~l~~~~ 404 (406)
T 1xi9_A 393 MDRFEKFMKERL 404 (406)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
No 15
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=2.2e-51 Score=405.85 Aligned_cols=364 Identities=25% Similarity=0.405 Sum_probs=317.6
Q ss_pred chHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCC
Q 012124 77 SKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTPD 155 (470)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~ 155 (470)
.....+.........+|+++|||+.|.+++++++.+.+++.+++... ...|++..|..+||+++++++.+.+|.+++++
T Consensus 8 ~~~~~~~~~~~~~~~~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~ 87 (376)
T 2dou_A 8 SVFLVVDEAKRKARERGVGLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPR 87 (376)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEECSSCCCCCCCCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTT
T ss_pred chHHHHHHHHHHhhccCCCEEeccCCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 44455555555555678899999999998888899999999987643 56787667899999999999998889887777
Q ss_pred -cEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEc
Q 012124 156 -QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILC 234 (470)
Q Consensus 156 -~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~ 234 (470)
+|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.+|+ ++++.+|++.+++++++++++|+++
T Consensus 88 ~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~l~~~~~~v~l~ 165 (376)
T 2dou_A 88 REALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPL--REDGLADLKAVPEGVWREAKVLLLN 165 (376)
T ss_dssp TSEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECB--CTTSSBCGGGSCHHHHHHEEEEEEC
T ss_pred ccEEEcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeC--CCCCCCCHHHHHHhhccCceEEEEC
Confidence 9999999999999999999999999999999999999999999999999998 4567789999999887788999999
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEE
Q 012124 235 SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 314 (470)
Q Consensus 235 ~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~ 314 (470)
+||||||.++|.+++++|+++|++| |++||+||+|.++.+++. ..++..+.+..+++++++||||.+|++|+|+||++
T Consensus 166 ~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 243 (376)
T 2dou_A 166 YPNNPTGAVADWGYFEEALGLARKH-GLWLIHDNPYVDQVYEGE-APSPLALPGAKERVVELFSLSKSYNLAGFRLGFAL 243 (376)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTGGGBSSSC-CCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEE
T ss_pred CCCCCcCccCCHHHHHHHHHHHHHc-CCEEEEEccchhcccCCC-CCChhhcCCCCCcEEEEecchhhcCChhheeEEEe
Confidence 9999999999999999999999999 999999999999888652 33444443335789999999999988999999999
Q ss_pred cCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeee
Q 012124 315 GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID 394 (470)
Q Consensus 315 ~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~ 394 (470)
+++++++.+.......+++++.+.|.++.++|+. .++++++.++.++++++.+.+.|+++ +.+..+.+|+|+|++
T Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~ 318 (376)
T 2dou_A 244 GSEEALARLERVKGVIDFNQYAGVLRMGVEALKT---PKEVVRGYARVYRERALGMAEALKGV--LSLLPPRATMYLWGR 318 (376)
T ss_dssp ECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTS---CHHHHHHHHHHHHHHHHHHHHHHTTT--SEECCCCBSSEEEEE
T ss_pred cCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCCeeEEEEEE
Confidence 9999999998887777778899999999999986 37889999999999999999999887 777778899999999
Q ss_pred ccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHH
Q 012124 395 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 461 (470)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l 461 (470)
+++.. +..++++.|+++ ||.+.||..|+. ++++|++++.+++++++++++|++++
T Consensus 319 ~~~~~-----------~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~Ris~~~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 319 LPEGV-----------DDLEFGLRLVER-GVALAPGRGFGPGGKGFVRIALVRPLEELLEAAKRIREAL 375 (376)
T ss_dssp CCTTC-----------CHHHHHHHHHHT-TEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred CCCCC-----------CHHHHHHHHHHC-CEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence 98542 678899998877 999999998874 57999999989999999999998764
No 16
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=100.00 E-value=7.9e-51 Score=403.28 Aligned_cols=372 Identities=28% Similarity=0.486 Sum_probs=320.6
Q ss_pred cccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHH
Q 012124 68 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEE 147 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~ 147 (470)
+.++..........+..... ..++|+|+.|.+++++++.+.+++.+.+......|++..|..+||+++++++.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~-----~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~ 83 (386)
T 1u08_A 9 QSKLPQLGTTIFTQMSALAQ-----QHQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERL 83 (386)
T ss_dssp CCSCCCCCCCHHHHHHHHHH-----HTTCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHH
T ss_pred chhhhcCCccHHHHHHHHHh-----cCCeEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHH
Confidence 44555555554444332221 1467999999998888899999999998776678988889999999999999988
Q ss_pred cCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC
Q 012124 148 NGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 148 ~g~~~~~~-~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
+|.+++++ +|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.++++.+ ++.+|++.|++++++
T Consensus 84 ~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~l~~ 162 (386)
T 1u08_A 84 YGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPP-HFRVDWQEFAALLSE 162 (386)
T ss_dssp HSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTT-TCCCCHHHHHHHCCT
T ss_pred hCCCCCCCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcc-cCcCCHHHHHHhhcc
Confidence 89888898 9999999999999999999999999999999999999999999999999998653 467999999999988
Q ss_pred CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccc
Q 012124 227 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~ 306 (470)
++++|++++||||||.++|.+++++|+++|++| |++||+||+|.++.|++....++..++...+++++++||||.++++
T Consensus 163 ~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 241 (386)
T 1u08_A 163 RTRLVILNTPHNPSATVWQQADFAALWQAIAGH-EIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMT 241 (386)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTS-CCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCG
T ss_pred cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHc-CcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCc
Confidence 999999999999999999999999999999999 9999999999999887655556655532257899999999999989
Q ss_pred cceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC
Q 012124 307 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 386 (470)
Q Consensus 307 G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 386 (470)
|+|+||+++++++++.+........++++.+.|.++..+|+.+ +++++++++.++++++.+.+.|+++ |+.+..+.
T Consensus 242 G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 317 (386)
T 1u08_A 242 GWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAE---PEHYLALPDFYRQKRDILVNALNES-RLEILPCE 317 (386)
T ss_dssp GGCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC---THHHHTHHHHHHHHHHHHHHHTTSS-SCEECCCC
T ss_pred ccceEEEEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCC
Confidence 9999999999999999988776667788999999999999863 6789999999999999999999988 89888888
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC----CCCcEEEEeecCHHHHHHHHHHHHH
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG----DDTCIRISYAASLTTLQAAVERIKK 459 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~----~~~~iRls~~~~~~~i~~~l~~l~~ 459 (470)
+|+|+|+++++.. ..+..++++.|++++||.+.||..|+ .++++|++++.++++|++++++|++
T Consensus 318 ~g~~~~~~~~~~~---------~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 318 GTYFLLVDYSAVS---------TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ 385 (386)
T ss_dssp BSSEEEEECTTTC---------CSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred ceEEEEEecCCCC---------CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcCCHHHHHHHHHHHhh
Confidence 8999999997530 01678888888866799999998885 3579999999999999999999864
No 17
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=100.00 E-value=1.4e-51 Score=414.01 Aligned_cols=363 Identities=23% Similarity=0.399 Sum_probs=319.0
Q ss_pred hcCCCeEEccCCCCC----CCChHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 91 QAGVSVIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 91 ~~~~~~i~l~~g~~~----~~~~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
.+++++|+|+.|.|+ +++++.+++++.+.+... ...|.+..|..++|+++++++.+. +.++++++|++|+|+++
T Consensus 51 ~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~-~~~~~~~~v~~t~g~t~ 129 (427)
T 3dyd_A 51 NPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCP-EAPLEAKDVILTSGCSQ 129 (427)
T ss_dssp CTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCBT-TBCCCGGGEEEESSHHH
T ss_pred cCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHHHHHhhc-CCCCChHHEEEecCcHH
Confidence 356688999999986 466899999999988764 468988999999999999999765 77788999999999999
Q ss_pred HHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCC
Q 012124 166 SILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 245 (470)
Q Consensus 166 al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s 245 (470)
++.+++..++++||+|++++|+|+++...++..|++++.+++++++++.+|++.|+++++++++++++++||||||.+++
T Consensus 130 al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~ 209 (427)
T 3dyd_A 130 AIDLCLAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFS 209 (427)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCTTEEEEEEESSCTTTCCCCC
T ss_pred HHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCEEEEECCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999987777889999999999889999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC-------HH
Q 012124 246 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-------KH 318 (470)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~-------~~ 318 (470)
.+++++|+++|+++ |+++|+||+|+++.+++....++..+.. ..++++++||||.|+++|+|+||++++ ++
T Consensus 210 ~~~l~~i~~~~~~~-~~~~i~Deay~~~~~~g~~~~~~~~~~~-~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~ 287 (427)
T 3dyd_A 210 KRHLQKILAVAARQ-CVPILADEIYGDMVFSDCKYEPLATLST-DVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNE 287 (427)
T ss_dssp HHHHHHHHHHHHHT-TCCEEEECTTTTCBCSSCCCCCGGGGCS-SCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHH
T ss_pred HHHHHHHHHHHHHC-CCEEEEEcCchhhccCCCcCccHHHhCC-CCcEEEEeeccccCCCcCcceEEEEecCcchhhHHH
Confidence 99999999999999 9999999999999988766667766665 467899999999998899999999987 57
Q ss_pred HHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCc
Q 012124 319 FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTY 398 (470)
Q Consensus 319 ~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~ 398 (470)
+++.+...... .++++.+.|.++.++|+.. ..+++++++++++++++.+.+.|+++||+.+..|.+|+|+|+.++..
T Consensus 288 i~~~l~~~~~~-~~~~~~~~~~a~~~~L~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~g~~~~~~l~~~ 364 (427)
T 3dyd_A 288 IRDGLVKLSQR-ILGPCTIVQGALKSILCRT--PGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEME 364 (427)
T ss_dssp HHHHHHHHHHH-HCCSCHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSBTTEEEEEECGG
T ss_pred HHHHHHHHHhc-cCCCCHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEecCHh
Confidence 88777766543 5679999999999999852 26788999999999999999999999899988899999999988632
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 399 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
. .....+..+++++|++++||.+.||..|+.++++|++++.+++++++++++|++++++++
T Consensus 365 ~------~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~~~ 425 (427)
T 3dyd_A 365 H------FPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVITVPEVMMLEACSRIQEFCEQHY 425 (427)
T ss_dssp G------CTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEESCSCHHHHHHHHHHHHHHHHHHC
T ss_pred h------cCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEECCCHHHHHHHHHHHHHHHHHhh
Confidence 0 000116778998888667999999999988999999999899999999999999998765
No 18
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=5.7e-51 Score=407.74 Aligned_cols=383 Identities=31% Similarity=0.519 Sum_probs=325.6
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 146 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~ 146 (470)
++++...+++.....+.... ...++|+|+.|.+++++++.+.+++.+++.+....|++..|..+||+++++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~ 77 (411)
T 2o0r_A 3 TVSRLRPYATTVFAEMSALA-----TRIGAVNLGQGFPDEDGPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRR 77 (411)
T ss_dssp CCGGGGGGSSCHHHHHHHHH-----HTTTCEESSCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhhHhHhcCccHHHHHHHHh-----hcCCeeeccCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 34556666666554443322 2345799999999888889999999999877667898888999999999999998
Q ss_pred HcCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCC-CCCccCHHhHhhhc
Q 012124 147 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS-ENFLLDPKVLESKL 224 (470)
Q Consensus 147 ~~g~~~~~~-~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~l 224 (470)
.+|.+++++ +|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.+|++.+ +++.+|++.|++++
T Consensus 78 ~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l 157 (411)
T 2o0r_A 78 HFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAV 157 (411)
T ss_dssp HHCCCCCTTTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHC
T ss_pred HcCCCCCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhh
Confidence 889888888 9999999999999999999999999999999999999999999999999998754 34679999999999
Q ss_pred cCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccc
Q 012124 225 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 304 (470)
Q Consensus 225 ~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~ 304 (470)
++++++|++++|+||||.++|.+++++|+++|++| |++||+||+|.++.+++....++..++...++++++.||||.+|
T Consensus 158 ~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~ 236 (411)
T 2o0r_A 158 TPRTRALIINSPHNPTGAVLSATELAAIAEIAVAA-NLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFN 236 (411)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTT
T ss_pred ccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcC
Confidence 88999999999999999999999999999999999 99999999999998876555666666544578999999999999
Q ss_pred cccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC
Q 012124 305 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 384 (470)
Q Consensus 305 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 384 (470)
++|+|+||+++++++++.+........++.+++.|.++..+|+. ..++++++++.++++++++.+.|+++ |+.+..
T Consensus 237 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 312 (411)
T 2o0r_A 237 CTGWKIGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDT---EDAWVAALRNSLRARRDRLAAGLTEI-GFAVHD 312 (411)
T ss_dssp CTTTCEEEEECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHH-TCEECC
T ss_pred CccceEEEEeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHHc-CCEecC
Confidence 89999999999999999998877766777888999999999986 37789999999999999999999988 888888
Q ss_pred CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-------------CCCcEEEEeecCHHHHH
Q 012124 385 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-------------DDTCIRISYAASLTTLQ 451 (470)
Q Consensus 385 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~-------------~~~~iRls~~~~~~~i~ 451 (470)
+.+|+|+|++++... ..+..+++++|++++||.+.||..|. .++++||+++.++++++
T Consensus 313 ~~~g~~~~~~~~~~~---------~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~ 383 (411)
T 2o0r_A 313 SYGTYFLCADPRPLG---------YDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLD 383 (411)
T ss_dssp CCBSSEEEEECGGGT---------CCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCSCHHHHH
T ss_pred CCeeEEEEEecCCCC---------CCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecCCHHHHH
Confidence 889999999997520 01577888888766699999998883 24689999988999999
Q ss_pred HHHHHHHHHHHhhCCCC
Q 012124 452 AAVERIKKGLLTLRPGV 468 (470)
Q Consensus 452 ~~l~~l~~~l~~~~~~~ 468 (470)
+++++|++++++.+...
T Consensus 384 ~~~~~l~~~~~~~~~~~ 400 (411)
T 2o0r_A 384 EAIRRLSVLAERPATGV 400 (411)
T ss_dssp HHHHHHGGGGC------
T ss_pred HHHHHHHHHHhccCcCC
Confidence 99999999887766543
No 19
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=100.00 E-value=1.6e-50 Score=406.77 Aligned_cols=366 Identities=25% Similarity=0.470 Sum_probs=317.0
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHc---CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCC-cEEEecChHHHHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQA 170 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~---~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~-~i~it~g~~~al~~~ 170 (470)
++|+|+.|.+++++++.+.+++.+++.. ....|++..|..+||+++++++.+.+|.+++++ +|++|+|+++++.++
T Consensus 38 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~ 117 (429)
T 1yiz_A 38 KPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYAT 117 (429)
T ss_dssp CCEECCSSSCSSCCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHH
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHH
Confidence 6799999999888889999999999876 356898888999999999999998889878888 999999999999999
Q ss_pred HHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCC--------CCccCHHhHhhhccCCceEEEEcCCCCCccc
Q 012124 171 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE--------NFLLDPKVLESKLTEKSRLLILCSPSNPTGS 242 (470)
Q Consensus 171 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~--------~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~ 242 (470)
+++++++||+|++++|+|+++...++..|++++.+|++.++ ++.+|++.|++++++++++|++++||||||.
T Consensus 118 ~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~ 197 (429)
T 1yiz_A 118 IQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGK 197 (429)
T ss_dssp HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEEEEEESSCTTTCC
T ss_pred HHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccCceEEEECCCCCCCCc
Confidence 99999999999999999999999999999999999997643 5679999999999889999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHH
Q 012124 243 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 322 (470)
Q Consensus 243 ~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~ 322 (470)
++|.+++++|+++|++| |++||+||+|.++.+++....++..++...++++++.||||.+|++|+|+||+++++++++.
T Consensus 198 ~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~ 276 (429)
T 1yiz_A 198 VMDRAELEVVANLCKKW-NVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKN 276 (429)
T ss_dssp CCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEESCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHc-CcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcceEEEEeCHHHHHH
Confidence 99999999999999999 99999999999998876655666666434678999999999998899999999999999999
Q ss_pred HHHHhhhccCCCChHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccC
Q 012124 323 CNKIQSQFTSGASSISQKAGVAALGL-----GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST 397 (470)
Q Consensus 323 l~~~~~~~~~~~~~~~q~a~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~ 397 (470)
+........++.+++.|.++.++|+. +.. +++++++++.++++++.+.+.|+++ |+.+..+.+|+|+|+++++
T Consensus 277 l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~ 354 (429)
T 1yiz_A 277 LQMVHQNCVYTCATPIQEAIAVGFETELKRLKSP-ECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFMVADWSS 354 (429)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTST-TSHHHHHHHHHHHHHHHHHHHHHHH-TCEEEECSBSSEEEEECCS
T ss_pred HHHHHhhcccCCChHHHHHHHHHHhcccccccch-HHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEEccc
Confidence 98877767788999999999999987 654 7789999999999999999999988 8888888889999999975
Q ss_pred ccCC-cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------CCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 398 YYGS-EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------DTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 398 ~~~~-~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-------~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
.... .........+..+++++|++++||.+.||..|+. ++++||+++.++++|++++++|++++++
T Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~ 428 (429)
T 1yiz_A 355 LDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKWKGS 428 (429)
T ss_dssp SCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCSCHHHHHHHHHHHHHHSCC
T ss_pred ccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecCCHHHHHHHHHHHHHhccC
Confidence 3000 0000000014567888887667999999988863 5799999999999999999999988653
No 20
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=100.00 E-value=5.4e-51 Score=409.61 Aligned_cols=375 Identities=20% Similarity=0.290 Sum_probs=311.2
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHH--HHHHH---------HHHHHcCCCCCCCCcCcHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVL--IAEAG---------INAIREGFTRYTPNAGTLE 135 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~--~~~a~---------~~~~~~~~~~y~~~~g~~~ 135 (470)
++.++..++++.+..+.+.... .++++|+|+.|.|+..+++. +..++ .+... ...+|++..|.++
T Consensus 7 ~s~~~~~~~~~~~~~~~~~~~~---~~~~~i~l~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~ 82 (425)
T 2r2n_A 7 ITAASAARNPSPIRTMTDILSR---GPKSMISLAGGLPNPNMFPFKTAVITVENGKTIQFGEEMMK-RALQYSPSAGIPE 82 (425)
T ss_dssp SCHHHHTCCCCSGGGHHHHHHH---SCTTCEECCCCCCCGGGCSEEEEEEEETTSCCEEECHHHHH-HHTSCCCTTCCHH
T ss_pred HHHHHhcCCCchHHHHHHHhhc---CCCCeEEcCCcCCCchhCCHHHHHHHHhhcccccccccchh-hhcCCCCCCCCHH
Confidence 4556667777777666554432 23578999999998655321 10000 11111 1357999999999
Q ss_pred HHHHHHHHHHHHcCCCCC-------CCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCc
Q 012124 136 LRSAICHKLKEENGLSYT-------PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR 208 (470)
Q Consensus 136 lr~~ia~~l~~~~g~~~~-------~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 208 (470)
||++|++++.+.+|++++ +++|++|+|+++++.++++++++|||+|++++|+|+++...++..|++++.+|++
T Consensus 83 lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 162 (425)
T 2r2n_A 83 LLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLGCNIINVASD 162 (425)
T ss_dssp HHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHGGGTCEEEEECEE
T ss_pred HHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeCcC
Confidence 999999999998898764 3799999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCccCHHhHhhhcc------------CCceEEEE-cCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEecccccccc
Q 012124 209 ISENFLLDPKVLESKLT------------EKSRLLIL-CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 275 (470)
Q Consensus 209 ~~~~~~~d~~~l~~~l~------------~~~~~i~l-~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~ 275 (470)
.+ ++|++.|+++++ +++++|++ ++||||||.++|.+++++|+++|++| |++||+||+|+++.|
T Consensus 163 ~~---~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~-~~~li~De~~~~~~~ 238 (425)
T 2r2n_A 163 ES---GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKY-DFLIIEDDPYYFLQF 238 (425)
T ss_dssp TT---EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTGGGBS
T ss_pred CC---CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHc-CCEEEEECCcccccC
Confidence 43 489999999886 36788876 78999999999999999999999999 999999999999999
Q ss_pred CCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhc---CCCC
Q 012124 276 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL---GYAG 352 (470)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~---~~~~ 352 (470)
++....++..++. .+++++++||||.++ +|+|+||+++++++++.+........++++.+.|.++.++|+. +.+
T Consensus 239 ~g~~~~~~~~~~~-~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~- 315 (425)
T 2r2n_A 239 NKFRVPTFLSMDV-DGRVIRADSFSKIIS-SGLRIGFLTGPKPLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGF- 315 (425)
T ss_dssp SSSCCCCTGGGCT-TSCEEEEEESTTTTC-STTCCEEEEEEHHHHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHHH-
T ss_pred CCCCCCCccccCC-CCCEEEEccchhhcc-CccceEEEecCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccchH-
Confidence 8766677777764 578999999999998 9999999999999999999888777788999999999999975 222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcc-CCCC-eecCCCceEEEeeeccCccCCcccCCCCCCCHHH-HHHHHHHcCCEEEEC
Q 012124 353 GEVVSKMVKAFRERRDFLVKSFGE-LEGV-KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES-LCRYLLDKAQVALVP 429 (470)
Q Consensus 353 ~~~~~~~~~~~~~~~~~l~~~L~~-~~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~L~~~~gI~v~p 429 (470)
.+|++++++.|+++++.+.+.|++ ++|+ .+..|.+|+|+|+++++.. +..+ +.+.|. ++||.+.|
T Consensus 316 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~-----------~~~~~~~~~l~-~~gv~v~p 383 (425)
T 2r2n_A 316 MAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGIN-----------DVKELIEEKAV-KMGVLMLP 383 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCS-----------CCHHHHHTHHH-HTTEECEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCC-----------CHHHHHHHHHH-HCCcEEec
Confidence 578899999999999999999987 6776 5677899999999998642 4555 455555 56999999
Q ss_pred CCCCCC-----CCcEEEEee-cCHHHHHHHHHHHHHHHHhh
Q 012124 430 GDAFGD-----DTCIRISYA-ASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 430 g~~f~~-----~~~iRls~~-~~~~~i~~~l~~l~~~l~~~ 464 (470)
|..|+. .+++||+++ .+++++++++++|++++++.
T Consensus 384 g~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 384 GNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp GGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 998874 379999998 49999999999999998764
No 21
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=100.00 E-value=3.2e-50 Score=396.60 Aligned_cols=364 Identities=34% Similarity=0.578 Sum_probs=320.5
Q ss_pred cccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHH
Q 012124 68 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEE 147 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~ 147 (470)
++++..++++....+..........|+++|+|+.|.|++++|+.+.+++.+.+......|++..|..+||+++++++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~ 82 (370)
T 2z61_A 3 SKRLLNFESFEVMDILALAQKLESEGKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDK 82 (370)
T ss_dssp CHHHHHCCCCTTHHHHHHHHHHHHTTCCCEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHH
T ss_pred hhhhhhccccHHHHHHHHHHHHHhcCCCEEEccCCCCCCCCCHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHH
Confidence 34455666777777777776666678889999999998878899999999998876778988889999999999999988
Q ss_pred cCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCC
Q 012124 148 NGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK 227 (470)
Q Consensus 148 ~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 227 (470)
+|+++++++|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.++ +|++.|+++++++
T Consensus 83 ~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~--------~d~~~l~~~l~~~ 154 (370)
T 2z61_A 83 YKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD--------FTVESLEEALSDK 154 (370)
T ss_dssp SSCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC--------SSHHHHHHHCCSS
T ss_pred hCCCCChhhEEECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEeC--------CCHHHHHHhcccC
Confidence 99888999999999999999999999999999999999999999999999999999887 5899999999888
Q ss_pred ceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccc
Q 012124 228 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 307 (470)
Q Consensus 228 ~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G 307 (470)
+++|++++|+||||.+++.+ |+++|++| |++||+||+|.++.+++ ...++..++...+++++++||||.+|++|
T Consensus 155 ~~~v~~~~p~nptG~~~~~~----l~~~~~~~-~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 228 (370)
T 2z61_A 155 TKAIIINSPSNPLGEVIDRE----IYEFAYEN-IPYIISDEIYNGLVYEG-KCYSAIEFDENLEKTILINGFSKLYAMTG 228 (370)
T ss_dssp EEEEEEESSCTTTCCCCCHH----HHHHHHHH-CSEEEEECTTTTCBSSS-CCCCGGGTCTTCSSEEEEEESTTTTTCGG
T ss_pred ceEEEEcCCCCCcCcccCHH----HHHHHHHc-CCEEEEEcchhhcccCC-CCcCHHHccCCCCcEEEEecChhccCCcc
Confidence 99999999999999999966 99999999 99999999999988865 33455666434578999999999998899
Q ss_pred ceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC
Q 012124 308 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL-GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 386 (470)
Q Consensus 308 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 386 (470)
+|+||+++++++++.+........++++++.|.++.++|+. + .++++++++.++++++.+.+.|+++ |+.+..+.
T Consensus 229 ~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 304 (370)
T 2z61_A 229 WRIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKET---EREINSMIKEFDRRRRLVLKYVKDF-GWEVNNPI 304 (370)
T ss_dssp GCCEEEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHH---HHHHHHHHHHHHHHHHHHHHHHHHT-TCBCCCCC
T ss_pred ceEEEEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCC
Confidence 99999999999999998887777778999999999888864 2 5788899999999999999999988 88888888
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
+|+++|+++++ +..++.+.|++++||.+.||..|+. ++++|++++.+++++++++++|+++++
T Consensus 305 ~~~~~~~~~~~-------------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 305 GAYYVFPNIGE-------------DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYANSYENIKEGLERIKEFLN 369 (370)
T ss_dssp BTTEECCBCSS-------------CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred cceEEEEecCC-------------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 99999999864 4678888887556999999998874 689999999999999999999998875
No 22
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=100.00 E-value=1.6e-50 Score=404.34 Aligned_cols=365 Identities=31% Similarity=0.536 Sum_probs=318.0
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCC-CcEEEecChHHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQ 169 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~-~~i~it~g~~~al~~ 169 (470)
.+.++|+|+.|.|++++|+.+.+++.+++... ...|++..|..++|+++++++.+.+|.++++ ++|++|+|+++++..
T Consensus 21 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~ 100 (410)
T 3e2y_A 21 ADPSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFN 100 (410)
T ss_dssp TSTTSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHH
T ss_pred cCCCeEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHH
Confidence 34578999999999999999999999998753 5689888899999999999999999998888 899999999999999
Q ss_pred HHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcC---------CCCCccCHHhHhhhccCCceEEEEcCCCCCc
Q 012124 170 AVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI---------SENFLLDPKVLESKLTEKSRLLILCSPSNPT 240 (470)
Q Consensus 170 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~---------~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPt 240 (470)
+++.++++||+|+++.|+|+++...++..|.+++.++++. +.++.+|++.+++++++++++|++++|||||
T Consensus 101 ~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~npt 180 (410)
T 3e2y_A 101 SIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPL 180 (410)
T ss_dssp HHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTEEEEEEESSCTTT
T ss_pred HHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCceEEEEeCCCCCC
Confidence 9999999999999999999999999999999999999873 2456689999999999899999999999999
Q ss_pred ccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHH
Q 012124 241 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 320 (470)
Q Consensus 241 G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~ 320 (470)
|.+++.+++++|+++|++| |++||+||+|.++.+++....++..+....+++++++||||.+|++|+|+||++++++++
T Consensus 181 G~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~ 259 (410)
T 3e2y_A 181 GKVYTRQELQVIADLCVKH-DTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIGPAHLI 259 (410)
T ss_dssp CCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEECCHHHH
T ss_pred CcCcCHHHHHHHHHHHHHc-CcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEEEECHHHH
Confidence 9999999999999999999 999999999999998876666777776556899999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCChHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeec
Q 012124 321 AACNKIQSQFTSGASSISQKAGVAALGL-----GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 395 (470)
Q Consensus 321 ~~l~~~~~~~~~~~~~~~q~a~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~ 395 (470)
+.+........++++++.|.++..+|+. +.. .++++++++.++++++.+.+.|+++ |+.+..|.+|+|+|+++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~ 337 (410)
T 3e2y_A 260 KHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDP-ECYFNSLPKELEVKRDRMVRLLNSV-GLKPIVPDGGYFIIADV 337 (410)
T ss_dssp HHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTST-TSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEEC
T ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHhhhccccch-HHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCccEEEEEEc
Confidence 9999888777888999999999999874 332 6789999999999999999999998 89988899999999988
Q ss_pred cCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------CCcEEEEeecCHHHHHHHHHHHHH
Q 012124 396 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------DTCIRISYAASLTTLQAAVERIKK 459 (470)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-------~~~iRls~~~~~~~i~~~l~~l~~ 459 (470)
+...........+..+..++++++++++||.+.||..|+. .+++||+++.+++++++++++|++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 338 SSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEIFRA 408 (410)
T ss_dssp GGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCCCHHHHHHHHHHHHT
T ss_pred hhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcCCHHHHHHHHHHHHh
Confidence 6531000000000012357888787777999999998863 479999999999999999999875
No 23
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=100.00 E-value=2.5e-51 Score=415.12 Aligned_cols=350 Identities=25% Similarity=0.402 Sum_probs=306.4
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHH-----cCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIR-----EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~-----~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
+++++|+|+.|++++++++.+++++.+++. .....|++..|..+||+++++++. +|+.+++++|++|+|++++
T Consensus 67 ~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~~i~~t~G~~~a 144 (449)
T 3qgu_A 67 PDAKIISLGIGDTTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGRAADEIFISDGSKCD 144 (449)
T ss_dssp TTCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGGGEEEESCHHHH
T ss_pred CCCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHHHEEEccCHHHH
Confidence 467899999999999999999999999987 456789888999999999999997 7888899999999999999
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCE----------EEEecCcCCCCCccCHHhHhhhccCCceEEEEcCC
Q 012124 167 ILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT----------PVILPTRISENFLLDPKVLESKLTEKSRLLILCSP 236 (470)
Q Consensus 167 l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~----------~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p 236 (470)
+..+ ..++++||+|++++|+|+++...++..|++ ++.++++.++++..|++.+ +++++|++++|
T Consensus 145 l~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~l~~p 218 (449)
T 3qgu_A 145 IARI-QMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----KRTDIIFFCSP 218 (449)
T ss_dssp HHHH-HHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----CCCSEEEEESS
T ss_pred HHHH-HHHhCCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHc-----CCCCEEEEeCC
Confidence 9988 888899999999999999999999999999 9999998766665665432 57899999999
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC
Q 012124 237 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 316 (470)
Q Consensus 237 ~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~ 316 (470)
|||||.++|.+++++|+++|++| |++||+||+|.++.+++....++..++...+++++++||||.+|++|+|+||++++
T Consensus 219 ~NPtG~~~~~~~l~~l~~l~~~~-~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~ 297 (449)
T 3qgu_A 219 NNPTGAAATRAQLTELVNFARKN-GSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVP 297 (449)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHC-CcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecC
Confidence 99999999999999999999999 99999999999999887666677777655688999999999999999999999999
Q ss_pred HHHHH--------HHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCce
Q 012124 317 KHFVA--------ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA 388 (470)
Q Consensus 317 ~~~~~--------~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g 388 (470)
+++++ .+.........+++++.|.++.+++... ..++++++++.++++++++.+.|+++ |+.+..+.++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 374 (449)
T 3qgu_A 298 KALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPE--GLKEMNAMIKFYKENAQILKTTFTEM-GFSVYGGDDA 374 (449)
T ss_dssp TTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEESSSS
T ss_pred HHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCe
Confidence 88765 4555555556678999999999998741 14678999999999999999999988 8988888889
Q ss_pred EEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 389 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
+|+|+.++ .. +..++++.|++++||.+.||..|+. ++++||+++.+++++++++++|++++++-.
T Consensus 375 ~~~~~~~~-~~-----------~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~~~ 441 (449)
T 3qgu_A 375 PYIWVGFP-GK-----------PSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFGSRENILEAVRRFKEAYGKRN 441 (449)
T ss_dssp SEEEEECT-TS-----------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHC---
T ss_pred eEEEEECC-CC-----------CHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHhcC
Confidence 99999998 32 7889999998877999999998874 589999998899999999999999987543
No 24
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=100.00 E-value=1.1e-50 Score=400.91 Aligned_cols=351 Identities=22% Similarity=0.356 Sum_probs=316.2
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 171 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~ 171 (470)
.|+++|||+.|++++++++.+.+++.+++.+....|++ .| .++|+++++++.+.+|+++++++|++|+|+++++..++
T Consensus 21 ~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~ 98 (377)
T 3fdb_A 21 YGQGVLPLWVAESDFSTCPAVLQAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAI 98 (377)
T ss_dssp SCTTSEECCSSCCCSCCCHHHHHHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHH
T ss_pred cCCCeeeecccCCCCCCCHHHHHHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHH
Confidence 57789999999999989999999999999887788977 77 89999999999999999889999999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHH
Q 012124 172 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
++++++||+|+++.|+|+++...++..|++++.+|++.+ +|++.|+++++++++++++++||||||.+++.+++++
T Consensus 99 ~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~ 174 (377)
T 3fdb_A 99 DHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDATGG----INLHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLNE 174 (377)
T ss_dssp HHHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTTS----CCHHHHHHHHHTTCCEEEEESSBTTTTBCCCHHHHHH
T ss_pred HHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCC----CCHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence 999999999999999999999999999999999998643 8999999999888999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEeccccccccCC-CCcccccccCCCCCceEEEeccCcccccccceeeEEEc-CHHHHHHHHHHhhh
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQ 329 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~~-~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~ 329 (470)
|+++|++| |++||+||+|.++.+++ ....++..++. .+++++++||||.+|++|+|+||+++ ++++++.+......
T Consensus 175 l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~-~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~ 252 (377)
T 3fdb_A 175 LCDLAHRY-DARVLVDEIHAPLVFDGQHTVAAGVSDTA-ASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPV 252 (377)
T ss_dssp HHHHHHHT-TCEEEEECTTGGGBSSSCCCCGGGSCHHH-HHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSCHH
T ss_pred HHHHHHHc-CCEEEEEcccchhhcCCCCCcccHHHccC-CCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHHHh
Confidence 99999999 99999999999998876 55556665544 57899999999999889999999886 78899999887776
Q ss_pred ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCCeecCCCceEEEeeeccCccCCcccCCCC
Q 012124 330 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK 408 (470)
Q Consensus 330 ~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 408 (470)
..++++++.|.++.++++. .+++++++++.++++++.+.+.|++ +||+.+..+.+++++|++++..-
T Consensus 253 ~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 320 (377)
T 3fdb_A 253 IKDGASTLGLIAAEAAYRY---GTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYLMWIDFRDTT--------- 320 (377)
T ss_dssp HHCCCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSBCSEEEEECTTSC---------
T ss_pred hcCCCCHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCeeEEEEEECcccC---------
Confidence 7788999999999999986 3788999999999999999999998 88999999999999999998631
Q ss_pred CCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012124 409 IENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 409 ~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~~~ 464 (470)
...++++.|++++||.+.||..|+. ++++|++++.+++++++++++|+++++++
T Consensus 321 --~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~~~e~i~~~l~~l~~~l~~~ 376 (377)
T 3fdb_A 321 --IEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFATSREVLEEAIDRMAKAVSHH 376 (377)
T ss_dssp --CCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHTTC
T ss_pred --CCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 2246777888777999999998875 68999999999999999999999998754
No 25
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=4.9e-50 Score=400.70 Aligned_cols=379 Identities=26% Similarity=0.466 Sum_probs=329.0
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 146 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~ 146 (470)
+++++...++++...+.+........|+++|+|+.|.+++++++.+++++ +.+......|++..|..++|+++++++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~ 94 (409)
T 2gb3_A 16 FSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKR 94 (409)
T ss_dssp CCHHHHSCCCCTTGGGHHHHHHHHHTTCEEEECSSCCCCSCCCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCccHHHHHHHHHHHHHhcCCCEEeccCCCCCCCCCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHH
Confidence 56667777777776677766666677889999999999887888899999 88766567898888999999999999998
Q ss_pred HcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC
Q 012124 147 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 147 ~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
.+|+++++++|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.+|++.++++.+ ++.|++++++
T Consensus 95 ~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~~ 173 (409)
T 2gb3_A 95 RQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFINE 173 (409)
T ss_dssp TSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCCT
T ss_pred HhCCCCCHHHEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhCc
Confidence 889888889999999999999999999999999999999999999999999999999999875445555 8999999988
Q ss_pred CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccc
Q 012124 227 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~ 306 (470)
++++|++++|+||||.++|.+++++|+++|+++ |++||+||+|+++.+++. ..++ +....+++++++||||.+|++
T Consensus 174 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~Dea~~~~~~~~~-~~~~--~~~~~~~~i~~~s~sK~~g~~ 249 (409)
T 2gb3_A 174 RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERH-GLFLIVDEVYSEIVFRGE-FASA--LSIESDKVVVIDSVSKKFSAC 249 (409)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCSSC-CCCG--GGSCCTTEEEEEESTTTTTCG
T ss_pred CCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHc-CCEEEEECcccccccCCC-CCCc--cccCCCCEEEEecchhccCCc
Confidence 999999999999999999999999999999999 999999999999887652 2332 222236789999999999989
Q ss_pred cceeeEEEcCH-HHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCee-cC
Q 012124 307 GWRLGYIAGPK-HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SE 384 (470)
Q Consensus 307 G~r~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~ 384 (470)
|+|+||+++++ ++++.+......+. +++.+.|.++.++|+. ...+++++++.++++++.+.+.|+++ |+.+ ..
T Consensus 250 G~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 324 (409)
T 2gb3_A 250 GARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNL---DDSFFDFVRETYRERVETVLKKLEEH-GLKRFTK 324 (409)
T ss_dssp GGCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCC
T ss_pred cceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHHc-CceeeeC
Confidence 99999999998 99999988777666 7899999999999976 37789999999999999999999988 8888 77
Q ss_pred CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHc-----CCEEEECCCCCCC-----CCcEEEEeecCHHHHHHHH
Q 012124 385 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK-----AQVALVPGDAFGD-----DTCIRISYAASLTTLQAAV 454 (470)
Q Consensus 385 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----~gI~v~pg~~f~~-----~~~iRls~~~~~~~i~~~l 454 (470)
+.+|+++|++++.. +..++++.|+++ +||.+.||..|+. ++++|++++.+++++++++
T Consensus 325 ~~~~~~~~~~~~~~------------~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~~~e~i~~~~ 392 (409)
T 2gb3_A 325 PSGAFYITAELPVE------------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAI 392 (409)
T ss_dssp CSBSSEEEEECSSS------------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHH
T ss_pred CCeeEEEEEEeCCC------------CHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeCCCHHHHHHHH
Confidence 88899999998732 678899988876 5999999988864 5799999999999999999
Q ss_pred HHHHHHHHhhCCCC
Q 012124 455 ERIKKGLLTLRPGV 468 (470)
Q Consensus 455 ~~l~~~l~~~~~~~ 468 (470)
++|++++++++.+.
T Consensus 393 ~~l~~~l~~~~~~~ 406 (409)
T 2gb3_A 393 DVLMEGLKMFCSSR 406 (409)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHhhhcc
Confidence 99999998876543
No 26
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=100.00 E-value=2.5e-50 Score=402.42 Aligned_cols=357 Identities=23% Similarity=0.339 Sum_probs=318.8
Q ss_pred CeEEccCCCCC-CCChHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCC-CcEEEecChHHHHHHHH
Q 012124 95 SVIRLAAGEPD-FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQAV 171 (470)
Q Consensus 95 ~~i~l~~g~~~-~~~~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~-~~i~it~g~~~al~~~~ 171 (470)
.+|||+.|++. +++++.+++++.+++.+. ...|++..|..++++++++++.+.+|.++++ ++|++|+|+++++..++
T Consensus 40 ~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~ 119 (407)
T 3nra_A 40 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAV 119 (407)
T ss_dssp CCEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHH
T ss_pred ceeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHH
Confidence 37999999887 567889999999988753 3468888999999999999999999988767 79999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcC----CCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHH
Q 012124 172 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI----SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKN 247 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~----~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~ 247 (470)
.+++++||+|+++.|+|+++...++..|++++.++++. ++++.+|++.|++++++++++|++++||||||.++|.+
T Consensus 120 ~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~ 199 (407)
T 3nra_A 120 AATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAE 199 (407)
T ss_dssp HTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCTTTCCCCCHH
T ss_pred HHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCCCCCCcccCHH
Confidence 99999999999999999999999999999999999842 35677999999999988999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccC-CCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHH
Q 012124 248 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP-GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI 326 (470)
Q Consensus 248 ~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~-~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~ 326 (470)
++++|+++|++| |++||+||+|+.+.+++....++..++ ...+++++++||||.+|++|+|+||+++++++++.+...
T Consensus 200 ~l~~i~~~~~~~-~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~ 278 (407)
T 3nra_A 200 EIGQIAALAARY-GATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKL 278 (407)
T ss_dssp HHHHHHHHHHHH-TCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHH
Confidence 999999999999 999999999999998876666777665 446899999999999999999999999999999999988
Q ss_pred hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCC
Q 012124 327 QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGF 406 (470)
Q Consensus 327 ~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 406 (470)
...+.++++++.|.++..+++. ...++++.+++++++++.+.+.|++++++.+..+.+++|+|++++...
T Consensus 279 ~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------- 348 (407)
T 3nra_A 279 QAIVSLRAAGYSQAVLRGWFDE---APGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLA------- 348 (407)
T ss_dssp HHHHTSSSCHHHHGGGGGTTCC---CTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCBS-------
T ss_pred HhhhccCCChHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCCCC-------
Confidence 8888888999999998888875 357788889999999999999999988999888899999999997620
Q ss_pred CCCCCHHHHHHHHHHcCCEEEECCCCCC--CCCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 407 GKIENSESLCRYLLDKAQVALVPGDAFG--DDTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 407 ~~~~~~~~l~~~L~~~~gI~v~pg~~f~--~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
.+..++++.|++++||.+.||..|+ .++++|++++.+++++++++++|++++++++
T Consensus 349 ---~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~~~~~~ 406 (407)
T 3nra_A 349 ---VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVERYR 406 (407)
T ss_dssp ---SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCSCHHHHHHHHHHHHHHHHHHB
T ss_pred ---CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHhh
Confidence 1678899988777799999999887 3579999999999999999999999998775
No 27
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=100.00 E-value=5.6e-51 Score=404.54 Aligned_cols=365 Identities=12% Similarity=0.107 Sum_probs=290.9
Q ss_pred ccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCC---C--CCChHHHHHHHHHHH-H-cCCCCCCCCcCcHHHHHHHH
Q 012124 69 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---D--FDTPVLIAEAGINAI-R-EGFTRYTPNAGTLELRSAIC 141 (470)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~---~--~~~~~~~~~a~~~~~-~-~~~~~y~~~~g~~~lr~~ia 141 (470)
.++...+++++..+.+..... ..+++|+|+.|.+ + +.+++.+.++.. .+ . ...++|++..|.++||++++
T Consensus 6 ~~~~~~~~~~i~~~~~~~~~~--~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia 82 (405)
T 3k7y_A 6 SSLENIEVDNILKTAREFKED--TCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQ 82 (405)
T ss_dssp GGCCCCCCCHHHHHHHHHTTS--SCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHH
T ss_pred hcCCCCCCChHHHHHHHHhcC--CCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHH
Confidence 456666777666655443322 2357899999973 3 334788888877 43 2 35678999999999999999
Q ss_pred HHHHHHcCCCCCCCc--EEEecChHHHHHHHHHHhcC--CCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCH
Q 012124 142 HKLKEENGLSYTPDQ--ILVSNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP 217 (470)
Q Consensus 142 ~~l~~~~g~~~~~~~--i~it~g~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 217 (470)
+|+.+..+..+++++ |++|+|+++++.+++.++.+ | |+|++++|+|++|...++..|++++.+|+..++++++|+
T Consensus 83 ~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 161 (405)
T 3k7y_A 83 NLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINY 161 (405)
T ss_dssp HHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEECH
T ss_pred HHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcCH
Confidence 999765555566665 59999999999999999987 9 999999999999999999999999999995455688999
Q ss_pred HhHhhhcc--CCceEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCC--cccccccCCCCCc
Q 012124 218 KVLESKLT--EKSRLLILCSP-SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT--HTSFASLPGMWER 292 (470)
Q Consensus 218 ~~l~~~l~--~~~~~i~l~~p-~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~--~~~~~~~~~~~~~ 292 (470)
+.|+++++ ++++++++++| |||||.+++.+++++|+++|++| +++||+||+|.+|.|++.. ..++..+....++
T Consensus 162 ~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~-~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~ 240 (405)
T 3k7y_A 162 DLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHK-KHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIA 240 (405)
T ss_dssp HHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH-CCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCC
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CeEEEEecCcccccCCCcccchHHHHHHHhcCCc
Confidence 99999985 35678888665 99999999999999999999999 9999999999999886421 2234344333579
Q ss_pred eEEEeccCcccccccceeeEEEc---CHHHHHHHH----HHhhhccCCCChHHHHHHHHHHhcCCC---ChHHHHHHHHH
Q 012124 293 TLTVNGFSKAFAMTGWRLGYIAG---PKHFVAACN----KIQSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMVKA 362 (470)
Q Consensus 293 ~i~i~S~sK~~~~~G~r~G~~~~---~~~~~~~l~----~~~~~~~~~~~~~~q~a~~~~l~~~~~---~~~~~~~~~~~ 362 (470)
+|+++||||+|+++|+|+||+++ ++++++.+. ...+....+++.+.|.++..+|.++.+ +.++++++++.
T Consensus 241 ~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~ 320 (405)
T 3k7y_A 241 FSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQR 320 (405)
T ss_dssp EEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999863 666665543 333444556788999999999986321 13557778888
Q ss_pred HHHHHHHHHHHhc----cCC---CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC
Q 012124 363 FRERRDFLVKSFG----ELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD 435 (470)
Q Consensus 363 ~~~~~~~l~~~L~----~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~ 435 (470)
|+++|+.+.+.|+ ++. +|++..|++|||+|+.++. +++++| +++||.+.||.
T Consensus 321 ~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~----------------~~~~~L-~~~gV~v~p~~---- 379 (405)
T 3k7y_A 321 ITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA----------------KIAEHL-KTHHIYIINNG---- 379 (405)
T ss_dssp HHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG----------------GGTTTT-TTTTEECCTTS----
T ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH----------------HHHHHH-HHCCEeecCCC----
Confidence 9999999999999 762 2688899999999998753 234566 67899999963
Q ss_pred CCcEEEEeec-CHHHHHHHHHHHHHHHHh
Q 012124 436 DTCIRISYAA-SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 436 ~~~iRls~~~-~~~~i~~~l~~l~~~l~~ 463 (470)
|||++. ++++++.++++|++++++
T Consensus 380 ----Ris~a~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 380 ----RINVSGITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp ----EEEGGGCCTTHHHHHHHHHHHHHHC
T ss_pred ----eEEEeccCHHHHHHHHHHHHHHHhh
Confidence 999997 889999999999999875
No 28
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=100.00 E-value=1.2e-49 Score=395.16 Aligned_cols=358 Identities=19% Similarity=0.297 Sum_probs=318.6
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 171 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~ 171 (470)
.|+++|+|+.|++++++|+.+.+++.+++.+....|++. ..++++++++++.+.+|.++++++|++|+|+++++.+++
T Consensus 25 ~g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~ 102 (391)
T 3dzz_A 25 LKEKELPMWIAEMDFKIAPEIMASMEEKLKVAAFGYESV--PAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMV 102 (391)
T ss_dssp CCTTCEECCSSCCSSCCCHHHHHHHHHHHTTCCCCCBCC--CHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHH
T ss_pred cCCCceeccccCCCCCCCHHHHHHHHHHHhcCcCCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHH
Confidence 345789999999999999999999999998777788655 689999999999999998889999999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCc-CCCCCccCHHhHhhhcc-CCceEEEEcCCCCCcccCCCHHHH
Q 012124 172 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR-ISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLL 249 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG~~~s~~~~ 249 (470)
.+++++||+|++++|+|+++...++..|++++.+|++ .++++.+|++.|+++++ +++++|++++||||||.++|.+++
T Consensus 103 ~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l 182 (391)
T 3dzz_A 103 RQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEV 182 (391)
T ss_dssp HHHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHH
T ss_pred HHhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHH
Confidence 9999999999999999999999999999999999996 34556799999999997 789999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC-CCceEEEeccCcccccccceeeEEEcC-HHHHHHHHHHh
Q 012124 250 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQ 327 (470)
Q Consensus 250 ~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~S~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~ 327 (470)
++|+++|++| |++||+||+|+++.+.+....++..+... .++++++.||||.+|++|+|+||++++ +++++.+....
T Consensus 183 ~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~ 261 (391)
T 3dzz_A 183 KRIAELCAKH-QVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESF 261 (391)
T ss_dssp HHHHHHHHHT-TCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHH
Confidence 9999999999 99999999999998887666677766532 478999999999999899999999997 89999888765
Q ss_pred hh-ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCCeecCCCceEEEeeeccCccCCcccC
Q 012124 328 SQ-FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEG 405 (470)
Q Consensus 328 ~~-~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 405 (470)
.. ..++++++.|.++..++.. ..++++++++.++++++.+.+.|++ ++|+.+..+.+++++|++++..-
T Consensus 262 ~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------ 332 (391)
T 3dzz_A 262 FLAGIGEPNLLAIPAAIAAYEE---GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYLAWVDISALG------ 332 (391)
T ss_dssp HHHTCSSCCTTHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCBSSEEEEECGGGC------
T ss_pred HhhccCCCCHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCceEEEEEehhhcC------
Confidence 43 3457889999999999886 3788999999999999999999998 89999999999999999997530
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEECCCCCCCC--CcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 406 FGKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 406 ~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~--~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
.+..++.+.|++++||.+.||..|+.. +++|++++.+++++++++++|++++++++
T Consensus 333 ----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~~~~ 390 (391)
T 3dzz_A 333 ----MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLACPKELVIDGMQRLKQGVLNLN 390 (391)
T ss_dssp ----SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCSCHHHHHHHHHHHHHHHHTCC
T ss_pred ----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence 168889999875569999999988764 79999999999999999999999998764
No 29
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-50 Score=414.28 Aligned_cols=395 Identities=21% Similarity=0.345 Sum_probs=305.6
Q ss_pred ccccccccCCchHHHHHHHHHHHHh---cCC-----CeEEccCCCCC---CCC----------------------hHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQ---AGV-----SVIRLAAGEPD---FDT----------------------PVLIA 113 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~i~l~~g~~~---~~~----------------------~~~~~ 113 (470)
+++++.++.......+...+.++++ .|. ++|.++.|+|. ..+ |..++
T Consensus 28 ~~~~~~~~~y~~rg~~~~~a~~~~~~~~~g~~~~f~~~i~~nig~p~~~~~~~~~~~r~~l~l~~~p~~~~~~~~P~~~~ 107 (498)
T 3ihj_A 28 MNPQVKAVEYAVRGPIVLKAGEIELELQRGIKKPFTEVIRANIGDAQAMGQQPITFLRQVMALCTYPNLLDSPSFPEDAK 107 (498)
T ss_dssp ETTEEEEEEEEECCHHHHHHHHHHHHHHTTCCCSSSSCBCCC----------CCHHHHHHHHHHHCGGGGGCSSSCHHHH
T ss_pred HHHHHHHhhhhhcCHHHHHHHHHHHHHhccCCCchhhhhhcCCcCcccccCCcchHHHHHHHHhcCccccCcccCCHHHH
Confidence 3444444443333334444444444 344 78999999883 222 55556
Q ss_pred HHHHHHHHc----CCCCCCCCcCcHHHHHHHHHHHHHHc-CCCCCCCcEEEecChHHHHHHHHHHhcCCCC----eEEEc
Q 012124 114 EAGINAIRE----GFTRYTPNAGTLELRSAICHKLKEEN-GLSYTPDQILVSNGAKQSILQAVLAVCSPGD----EVIIP 184 (470)
Q Consensus 114 ~a~~~~~~~----~~~~y~~~~g~~~lr~~ia~~l~~~~-g~~~~~~~i~it~g~~~al~~~~~~l~~~gd----~Vlv~ 184 (470)
+++.+++.. ....|+++.|.+++|++|++++.+.+ |+++++++|++|+|+++++.+++.+++++|| +|+++
T Consensus 108 ~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~ 187 (498)
T 3ihj_A 108 KRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIP 187 (498)
T ss_dssp HHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEE
T ss_pred HHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEe
Confidence 666777764 34689999999999999999999888 4888999999999999999999999999875 99999
Q ss_pred CCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-----CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhC
Q 012124 185 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 259 (470)
Q Consensus 185 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-----~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~ 259 (470)
.|+|+.+...++..|++++.++++++++|++|++.|++++++ ++++|++++||||||.++|.+++++|+++|++|
T Consensus 188 ~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~ 267 (498)
T 3ihj_A 188 IPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEE 267 (498)
T ss_dssp ESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999888899999999999965 589999999999999999999999999999999
Q ss_pred CCEEEEEeccccccccCCC-CcccccccCC-------CCCceEEEeccCccc-ccccceeeEEE---cCHHHHHHHHHHh
Q 012124 260 PRLLVLSDEIYEHIIYAPA-THTSFASLPG-------MWERTLTVNGFSKAF-AMTGWRLGYIA---GPKHFVAACNKIQ 327 (470)
Q Consensus 260 ~~~~iI~Dd~~~~~~~~~~-~~~~~~~~~~-------~~~~~i~i~S~sK~~-~~~G~r~G~~~---~~~~~~~~l~~~~ 327 (470)
+++||+||+|.++.|++. ...++..+.. ...++|+++||||.+ |++|+|+||++ +++++++.+.+..
T Consensus 268 -~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~ 346 (498)
T 3ihj_A 268 -KLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLL 346 (498)
T ss_dssp -TCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHH
T ss_pred -CcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHH
Confidence 999999999999999754 4555555321 124589999999999 78999999998 6999999998876
Q ss_pred hhccCCCChHHHHHHHHHHhc-----CCCChHH---HHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCcc
Q 012124 328 SQFTSGASSISQKAGVAALGL-----GYAGGEV---VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY 399 (470)
Q Consensus 328 ~~~~~~~~~~~q~a~~~~l~~-----~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~ 399 (470)
. ...+++.+.|.++..+++. +.+ ..+ .+++++.++++++.+.+.|++++|+++..|++|||+|++++...
T Consensus 347 ~-~~~~~~~~~q~a~~~~l~~~~~g~~~~-~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~~~~~~l~~p~ 424 (498)
T 3ihj_A 347 S-VRLCPPVSGQAAMDIVVNPPVAGEESF-EQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPA 424 (498)
T ss_dssp H-HSCCCCHHHHHHHHHHTCCCCTTSTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECCCH
T ss_pred h-ccCCCCHHHHHHHHHHhcCCccCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEEEEEEeccCch
Confidence 6 5567899999999888874 121 334 46778899999999999999999999999999999998764210
Q ss_pred CC-cccCCCCCCCHHHH-HHHHHHcCCEEEECCCCCCC---CCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 400 GS-EAEGFGKIENSESL-CRYLLDKAQVALVPGDAFGD---DTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 400 ~~-~~~~~~~~~~~~~l-~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
.. ...... ..+.+++ +.++++++||.+.||+.|+. .++||++++.+++++++++++|++++++++
T Consensus 425 ~~~~~~~~~-g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~~~e~l~~~i~~L~~~~~~~~ 494 (498)
T 3ihj_A 425 KAVEAAQAH-QMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHINFL 494 (498)
T ss_dssp HHHHHHHHT-TSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhc-CCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence 00 000000 0134444 66677777999999999984 359999998899999999999999988754
No 30
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=100.00 E-value=1.5e-49 Score=396.93 Aligned_cols=380 Identities=23% Similarity=0.372 Sum_probs=324.9
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCC--ChHHHHHHHHHHHHcC---CCCCCCCcCcHHHHHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFD--TPVLIAEAGINAIREG---FTRYTPNAGTLELRSAIC 141 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~--~~~~~~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia 141 (470)
++.+...+.++....+.........+|+++|||+.|.|+.. +++.+.+++.+++... .. |++..|..++|++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la 85 (407)
T 2zc0_A 7 LAGRANWIKGSALADVMKKASELQKKGVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELA 85 (407)
T ss_dssp SCGGGGGCCCCHHHHHHHHHHHHHHSSCCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHH
T ss_pred hhhhhccCCchHHHHHHHhhhcccCCCCceEeCCCCCCCchhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHH
Confidence 34455666666666665555443346778999999988754 5788999999888753 35 988889999999999
Q ss_pred HHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHh
Q 012124 142 HKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLE 221 (470)
Q Consensus 142 ~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~ 221 (470)
+++.+.+|+++++++|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.+|.+.+ ++|++.|+
T Consensus 86 ~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~---~~d~~~l~ 162 (407)
T 2zc0_A 86 AFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVDND---GMRVDLLE 162 (407)
T ss_dssp HHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT---EECHHHHH
T ss_pred HHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCEEEEcccCCC---CCCHHHHH
Confidence 999888898788899999999999999999999999999999999999999999999999999998643 38999999
Q ss_pred hhcc----C--CceEEE-EcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceE
Q 012124 222 SKLT----E--KSRLLI-LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 294 (470)
Q Consensus 222 ~~l~----~--~~~~i~-l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i 294 (470)
++++ + ++++|+ +++||||||.++|.+++++|+++|++| |++||+||+|.++.+++....++..++. .++++
T Consensus 163 ~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~-~~~~i 240 (407)
T 2zc0_A 163 EKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKY-DLLIIEDTAYNFMRYEGGDIVPLKALDN-EGRVI 240 (407)
T ss_dssp HHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTSBSSCSSCCCGGGGCS-SCCEE
T ss_pred HHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEECCCcccccCCCCCCChhhcCC-CCCEE
Confidence 9987 6 788875 689999999999999999999999999 9999999999998887655556666654 46899
Q ss_pred EEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHHH
Q 012124 295 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG-EVVSKMVKAFRERRDFLVKS 373 (470)
Q Consensus 295 ~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~ 373 (470)
+++||||.++ +|+|+||+++++++++.+........++++++.|.++..+++.+.+ + ++++++++.++++++.+.+.
T Consensus 241 ~~~s~sK~~~-~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 318 (407)
T 2zc0_A 241 VAGTLSKVLG-TGFRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYF-EKYHLEGALLGYKEKRDIMLKA 318 (407)
T ss_dssp EEEESTTTTC-TTSCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHH-HHHTTTTHHHHHHHHHHHHHHH
T ss_pred EEcccccccC-CCcceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999998887777778899999999999987432 4 67888899999999999999
Q ss_pred hcc-CCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEeec-CH
Q 012124 374 FGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIRISYAA-SL 447 (470)
Q Consensus 374 L~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~----~~~iRls~~~-~~ 447 (470)
|++ ++++.+..|.+|+|+|+++++.. +..++++.|.+++||.+.||..|+. ++++|++++. ++
T Consensus 319 L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~ 387 (407)
T 2zc0_A 319 LENHLPNAEFTKPIAGMFVMFFLPEGA-----------DGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSK 387 (407)
T ss_dssp HHHHCTTSCBCCCSBSSEEEEECSTTC-----------CHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCT
T ss_pred HHHhCCCCEEecCCCcEEEEEEcCCCC-----------CHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCH
Confidence 987 57888877888999999997542 6788999988777999999988853 5799999998 78
Q ss_pred HHHHHHHHHHHHHHHhhC
Q 012124 448 TTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 448 ~~i~~~l~~l~~~l~~~~ 465 (470)
+++++++++|+++++++.
T Consensus 388 ~~i~~~~~~l~~~l~~~~ 405 (407)
T 2zc0_A 388 EEIPIGIKKLAKLYKEKF 405 (407)
T ss_dssp THHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999998764
No 31
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=100.00 E-value=1.3e-49 Score=393.98 Aligned_cols=353 Identities=23% Similarity=0.383 Sum_probs=314.9
Q ss_pred CCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHH
Q 012124 93 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 172 (470)
Q Consensus 93 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~ 172 (470)
++++|+|+.|++++++|+.+.+++.+++.+....|++. ..++++++++++.+.+|.++++++|++|+|+++++.++++
T Consensus 23 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~ 100 (383)
T 3kax_A 23 NEELIHAWIADMDFEVPQPIQTALKKRIEHPIFGYTLP--PENIGDIICNWTKKQYNWDIQKEWIVFSAGIVPALSTSIQ 100 (383)
T ss_dssp SSCCEECCCSSCSSCCCHHHHHHHHHHHHSCCCCCCCC--CTTHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHH
T ss_pred CCCeeecccccCCCCCCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHH
Confidence 46789999999999999999999999998777788654 6899999999999999988889999999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCC-CCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHH
Q 012124 173 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE-NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 173 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
+++++||+|+++.|+|+++...++..|++++.++++.++ +|.+|++.|++++++++++|++++||||||.++|.+++++
T Consensus 101 ~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~ 180 (383)
T 3kax_A 101 AFTKENESVLVQPPIYPPFFEMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQQGVKLMLLCSPHNPIGRVWKKEELTK 180 (383)
T ss_dssp HHCCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTTTCCEEEEESSBTTTTBCCCHHHHHH
T ss_pred HhCCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccceecCCcEEEcHHHHHHHhCcCCeEEEEeCCCCCCCcCcCHHHHHH
Confidence 999999999999999999999999999999999997543 4678999999999889999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC-CCceEEEeccCcccccccceeeEEEc-CHHHHHHHHHHhhh
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQ 329 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~S~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~ 329 (470)
|+++|++| |++||+||+|.++.+++....++..+... .+++++++||||.++++|+|+||+++ ++++++.+......
T Consensus 181 l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~ 259 (383)
T 3kax_A 181 LGSLCTKY-NVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCMAPSKTFNIAGLQASIIIIPNEKLRQAFTSIQYR 259 (383)
T ss_dssp HHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCEEEEEccccccccCCCCceeHhhcCccccCcEEEEEEChhhccCcchhheEEEeCCHHHHHHHHHHHhh
Confidence 99999999 99999999999998877666667666532 37899999999999999999999998 58899988877665
Q ss_pred ccC-CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCCeecCCCceEEEeeeccCccCCcccCCC
Q 012124 330 FTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG 407 (470)
Q Consensus 330 ~~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 407 (470)
... +++++.|.++..+++. .+++++++++.++++++.+.+.|++ ++|+.+..+.+++++|++++..-
T Consensus 260 ~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 328 (383)
T 3kax_A 260 QGFHGLNIFAYTAMQSAYTE---CNDWLNEIRFYIEDNAKFACEYIKDHIPTLSVMKPEGSFLLWIDCSALN-------- 328 (383)
T ss_dssp TTCCCCCHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCSBSSEEEEECGGGC--------
T ss_pred cccCCCCHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCceEEEEEEccccC--------
Confidence 443 7899999999999986 4788999999999999999999988 78999999999999999997530
Q ss_pred CCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHH
Q 012124 408 KIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 461 (470)
Q Consensus 408 ~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l 461 (470)
.+..++++.|++++||.+.||..|+. ++++|++++.+++++++++++|++++
T Consensus 329 --~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 329 --LSQDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIGCPRSVLEEILNRLRHTF 382 (383)
T ss_dssp --CCHHHHHHHHHHTSCEECEESGGGCTTCTTEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHhhCCEEeECchhhcCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 16889999988667999999998875 48999999999999999999999876
No 32
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=100.00 E-value=1.5e-50 Score=399.76 Aligned_cols=361 Identities=20% Similarity=0.306 Sum_probs=311.7
Q ss_pred cCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCC
Q 012124 74 VKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYT 153 (470)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~ 153 (470)
+++.+...+.+.......+| ++|||+.|++++++|+.+.+++.+.+ .....|++..|..++|+++++++.+.+|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~g-~~i~l~~~~~~~~~~~~v~~a~~~~~-~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~ 81 (376)
T 3ezs_A 4 FEPYPFERLRALLKEITPKK-RGLDLGIGEPQFETPKFIQDALKNHT-HSLNIYPKSAFEESLRAAQRGFFKRRFKIELK 81 (376)
T ss_dssp CCCCHHHHHHHHHTTCCCSS-CCCBCSSCCCCSCCCHHHHHHHHTTG-GGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCC
T ss_pred CCcchHHHHHHHHHhhhccC-CEEEeCCCCCCCCCCHHHHHHHHHhh-hhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCC
Confidence 34555556655555444566 89999999999988999999998877 44678988899999999999999998898888
Q ss_pred CCcEEEecChHHHHHHHHHHhcCC--CCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEE
Q 012124 154 PDQILVSNGAKQSILQAVLAVCSP--GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLL 231 (470)
Q Consensus 154 ~~~i~it~g~~~al~~~~~~l~~~--gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i 231 (470)
+++|++|+|+++++.+++++++++ ||+|++++|+|+++...++..|++++.++++.+++ +++ .+++++.++++++
T Consensus 82 ~~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~-~l~~~~~~~~~~v 158 (376)
T 3ezs_A 82 ENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKEND--FTP-SLNEKELQEVDLV 158 (376)
T ss_dssp GGGEEEESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGT--SCC-CCCHHHHHHCSEE
T ss_pred HHHEEECcCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCCC--cch-hHHhhhccCCCEE
Confidence 999999999999999999999999 99999999999999999999999999999976544 444 6677776789999
Q ss_pred EEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCC-----CCCceEEEeccCcccccc
Q 012124 232 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG-----MWERTLTVNGFSKAFAMT 306 (470)
Q Consensus 232 ~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~-----~~~~~i~i~S~sK~~~~~ 306 (470)
++++||||||.+++.+++++|+++|++| |++||+||+|.++.+++. ..++..... ..+++++++||||.+|++
T Consensus 159 ~~~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 236 (376)
T 3ezs_A 159 ILNSPNNPTGRTLSLEELISWVKLALKH-DFILINDECYSEIYENTP-PPSLLEACMLAGNEAFKNVLVIHSLSKRSSAP 236 (376)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBSSSC-CCCHHHHHHHTTCTTCTTEEEEEESTTTTTCG
T ss_pred EEcCCCCCcCCCCCHHHHHHHHHHHHHc-CcEEEEEccchhhccCCC-CCCHHHccccccccccCcEEEEecchhccCCc
Confidence 9999999999999999999999999999 999999999999888763 333333210 258899999999999889
Q ss_pred cceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC
Q 012124 307 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 386 (470)
Q Consensus 307 G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 386 (470)
|+|+||+++++++++.+........++++++.|.++.++++. .+++++.++.++++++.+.+.|+ ++. .+.
T Consensus 237 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~---~~~--~~~ 307 (376)
T 3ezs_A 237 GLRSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLD----DRHAEFFRNIYANNLKLARKIFK---NTL--IYP 307 (376)
T ss_dssp GGCCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHC----SHHHHHHHHHHHHHHHHHHHHST---TCC--CCS
T ss_pred cceeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC----cHHHHHHHHHHHHHHHHHHHHhc---CCC--CCC
Confidence 999999999999999999888877888999999999999985 57789999999999999999997 554 678
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC----CCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG----DDTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~----~~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
+|+|+|++++ +..++++.|++++||.+.||..|+ .++++||+++.+++++++++++|+++++
T Consensus 308 ~~~~~~~~~~--------------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~ 373 (376)
T 3ezs_A 308 YSFYVYLPVQ--------------NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYRE 373 (376)
T ss_dssp BSSEEEEECS--------------CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred cceEEEEECC--------------CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 8999999986 467888888874699999999987 3579999998899999999999999987
Q ss_pred hh
Q 012124 463 TL 464 (470)
Q Consensus 463 ~~ 464 (470)
+.
T Consensus 374 ~~ 375 (376)
T 3ezs_A 374 NH 375 (376)
T ss_dssp C-
T ss_pred hc
Confidence 54
No 33
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=100.00 E-value=1.7e-49 Score=395.48 Aligned_cols=356 Identities=24% Similarity=0.348 Sum_probs=312.7
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
+++++|+.|.+++.+++.+.+++.+.+......|++. ..++|+++++++.+.+|+++++++|++|+|+++++.+++++
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~ 108 (399)
T 1c7n_A 31 NEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVRE 108 (399)
T ss_dssp TTCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHH
T ss_pred CCceeeeecCCCCCCCHHHHHHHHHHHhcCCCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHH
Confidence 3789999999988889999999999987667788654 89999999999998889878889999999999999999999
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcC-CCCCccCHHhHhhhcc-CCceEEEEcCCCCCcccCCCHHHHHH
Q 012124 174 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI-SENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 174 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
++++||+|++++|+|+++...++..|++++.+|++. ++++.+|++.|+++++ +++++|++++||||||.++|.+++++
T Consensus 109 l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~ 188 (399)
T 1c7n_A 109 FTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQK 188 (399)
T ss_dssp HCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHH
T ss_pred hcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHH
Confidence 999999999999999999999999999999999863 3346699999999997 68999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC-CCceEEEeccCcccccccceeeEEEcC-HHHHHHHHHHhhh
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQ 329 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~S~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~ 329 (470)
|+++|++| |++||+||+|.++.+++....++..++.. .+++++++||||.+|++|+|+||++++ +++++.+......
T Consensus 189 i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~ 267 (399)
T 1c7n_A 189 IKDIVLKS-DLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDA 267 (399)
T ss_dssp HHHHHHHS-SCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhh
Confidence 99999999 99999999999998876555566655421 368899999999999899999999997 6799998887766
Q ss_pred ccC-CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCCeecCCCceEEEeeeccCc-cCCcccCC
Q 012124 330 FTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTY-YGSEAEGF 406 (470)
Q Consensus 330 ~~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~ 406 (470)
+++ +++++.|.++.++|+. ..+++++.++.++++++.+.+.|++ +||+.+..+.+++++|++++.. .
T Consensus 268 ~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 337 (399)
T 1c7n_A 268 TSGMPFTTLGYKACEICYKE---CGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKM------- 337 (399)
T ss_dssp TTCCCCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGGCC-------
T ss_pred cccCCCCHHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCCceEEEEEEcccCCC-------
Confidence 654 5799999999999886 3678999999999999999999998 8899888889999999999752 1
Q ss_pred CCCCCHHHHHHHHHHcCCEEEECCCCCC--CCCcEEEEeecCHHHHHHHHHHHHHHHHhhCC
Q 012124 407 GKIENSESLCRYLLDKAQVALVPGDAFG--DDTCIRISYAASLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 407 ~~~~~~~~l~~~L~~~~gI~v~pg~~f~--~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~~ 466 (470)
+..++++.|++++||.+.||..|+ .++++|++++..++++++++++|++++++++.
T Consensus 338 ----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~~~ 395 (399)
T 1c7n_A 338 ----DHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLKN 395 (399)
T ss_dssp ----CHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC-
T ss_pred ----CHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEeccCHHHHHHHHHHHHHHHHHHHh
Confidence 677899988766799999999886 46799999999889999999999999988753
No 34
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=100.00 E-value=3.4e-49 Score=392.00 Aligned_cols=351 Identities=24% Similarity=0.401 Sum_probs=313.9
Q ss_pred CCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHH
Q 012124 93 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 172 (470)
Q Consensus 93 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~ 172 (470)
++++|+|+.|++++++|+.+.+++.+.+.+....|++ +..++++++++++.+.+|+++++++|++|+|+++++.+++.
T Consensus 31 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~ 108 (391)
T 4dq6_A 31 TNDLLPMWVADMDFKAAPCIIDSLKNRLEQEIYGYTT--RPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLIN 108 (391)
T ss_dssp CSCSEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHH
T ss_pred CCCceeccccCCCCCCCHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHH
Confidence 4688999999999999999999999998776677754 67999999999999999988889999999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCc--CCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHH
Q 012124 173 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR--ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 250 (470)
Q Consensus 173 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~--~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~ 250 (470)
+++++||+|+++.|+|+++...++..|++++.+|++ .++++.+|++.|++++++ +++|++++|+||||.++|.++++
T Consensus 109 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~ 187 (391)
T 4dq6_A 109 ELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPHNPVGRVWTKDELK 187 (391)
T ss_dssp HHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSBTTTTBCCCHHHHH
T ss_pred HhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCCCCCCcCcCHHHHH
Confidence 999999999999999999999999999999999997 456678999999999988 99999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC-CCceEEEeccCcccccccceeeEEEcCH-HHHHHHHHHhh
Q 012124 251 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACNKIQS 328 (470)
Q Consensus 251 ~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~S~sK~~~~~G~r~G~~~~~~-~~~~~l~~~~~ 328 (470)
+|+++|++| |++||+||+|.++.+++....++..+..+ .++++++.||||.+|++|+|+||+++++ ++++.+.....
T Consensus 188 ~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~ 266 (391)
T 4dq6_A 188 KLGDICLKH-NVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFT 266 (391)
T ss_dssp HHHHHHHHT-TCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHH
Confidence 999999999 99999999999998887666666666532 4789999999999988999999999875 89988887755
Q ss_pred hc-cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCCeecCCCceEEEeeeccC-ccCCcccC
Q 012124 329 QF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFST-YYGSEAEG 405 (470)
Q Consensus 329 ~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~g~~~~~~~~~-~~~~~~~~ 405 (470)
.. .++++++.|.++..++.. .++++++.++.++++++.+.+.|++ ++|+.+..+.+++++|++++. ..
T Consensus 267 ~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 337 (391)
T 4dq6_A 267 RIDIKRNNCFSLVATEASYNN---GESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEGTYLLWVDFSALGL------ 337 (391)
T ss_dssp HTTCCCCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCSBSSEEEEECGGGCC------
T ss_pred hhcCCCCCHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCCccEEEEEEhhhcCC------
Confidence 44 346889999999998886 3788999999999999999999988 789999999999999999985 22
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHH
Q 012124 406 FGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 461 (470)
Q Consensus 406 ~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l 461 (470)
+..++++.|.+++||.+.||..|+. ++++|++++.+++++++++++|++++
T Consensus 338 -----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 338 -----SDEELESILVQKGKVALNQGNSFGIGGSGYQRINLACPRSMLEEALIRIKNAI 390 (391)
T ss_dssp -----CHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 7889999988777999999998875 48999999999999999999999876
No 35
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=2.7e-50 Score=404.54 Aligned_cols=355 Identities=21% Similarity=0.352 Sum_probs=309.7
Q ss_pred CCCeEEccCCCCCCC--ChHHHHHHHHHHHHcC---CCCCCCCcCcHHHHHHHHHHHHHHcCCC-CCCCcEEEecChHHH
Q 012124 93 GVSVIRLAAGEPDFD--TPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLS-YTPDQILVSNGAKQS 166 (470)
Q Consensus 93 ~~~~i~l~~g~~~~~--~~~~~~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia~~l~~~~g~~-~~~~~i~it~g~~~a 166 (470)
++++|||+.|.|+.. +++.+.+++.+++... ...|++..|..+||+++++++.+.+|++ +++++|++|+|++++
T Consensus 42 ~~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~a 121 (425)
T 1vp4_A 42 DKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQA 121 (425)
T ss_dssp STTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHH
T ss_pred CCCceeCCCCCCCcccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHH
Confidence 457899999988654 5788999999888653 4689888899999999999998777877 788999999999999
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC--------CceEEE-EcCCC
Q 012124 167 ILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE--------KSRLLI-LCSPS 237 (470)
Q Consensus 167 l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~--------~~~~i~-l~~p~ 237 (470)
+.+++++++++||+|++++|+|+++...++..|++++.+|++.+ ++|++.|++++++ ++++|+ +++||
T Consensus 122 l~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~ 198 (425)
T 1vp4_A 122 LDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD---GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFH 198 (425)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT---EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSC
T ss_pred HHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCCC---CCCHHHHHHHHHhhhhcccCCCceEEEECCCCC
Confidence 99999999999999999999999999999999999999998653 3899999998865 788885 79999
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH
Q 012124 238 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 317 (470)
Q Consensus 238 nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~ 317 (470)
||||.++|.+++++|+++|+++ |++||+||+|.++.+++....++..++. .+++++++||||.++ +|+|+||+++++
T Consensus 199 nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~-~~~~i~~~s~sK~~~-~G~r~G~~~~~~ 275 (425)
T 1vp4_A 199 NPAGVTTSLEKRKALVEIAEKY-DLFIVEDDPYGALRYEGETVDPIFKIGG-PERVVLLNTFSKVLA-PGLRIGMVAGSK 275 (425)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHT-TCEEEEECSSTTCBCSSCCCCCHHHHHC-TTTEEEEEESTTTTC-GGGCEEEEECCH
T ss_pred CCCCCcCCHHHHHHHHHHHHHc-CCEEEEECCCccccCCCCCCcCHHHhCC-CCCEEEEeccccccc-cccceEEEeeCH
Confidence 9999999999999999999999 9999999999999887655556665543 478999999999999 999999999999
Q ss_pred HHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CC---CCeecCCCceEEEee
Q 012124 318 HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LE---GVKMSEPQGAFYLFI 393 (470)
Q Consensus 318 ~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~---g~~~~~~~~g~~~~~ 393 (470)
++++.+.......+++++++.|.++..+|+.+.+ +++++++++.++++++.+.+.|++ ++ |+.+..|.+|+|+|+
T Consensus 276 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~ 354 (425)
T 1vp4_A 276 EFIRKIVQAKQSADLCSPAITHRLAARYLERYDL-LEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWL 354 (425)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCH-HHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEE
T ss_pred HHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEE
Confidence 9999998877777778899999999999987533 678899999999999999999987 45 688887888999999
Q ss_pred eccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEeec-CHHHHHHHHHHHHHHHHhhCC
Q 012124 394 DFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIRISYAA-SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~----~~~iRls~~~-~~~~i~~~l~~l~~~l~~~~~ 466 (470)
++++.. +..++++.|.++ ||.+.||..|+. ++++||+++. +++++++++++|+++++++..
T Consensus 355 ~~~~~~-----------~~~~l~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~~l~~l~~~l~~~~~ 420 (425)
T 1vp4_A 355 TLPEGF-----------DTWEMFEYAKRK-KVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYGK 420 (425)
T ss_dssp ECCTTC-----------CTTTTHHHHHHH-TEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCC-----------CHHHHHHHHHHC-CCEEECchhhcCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 998532 566788888877 999999998853 5799999998 799999999999999887643
No 36
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=4.2e-49 Score=391.43 Aligned_cols=352 Identities=18% Similarity=0.305 Sum_probs=306.7
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHH-HHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLE-LRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~-lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
++|+|+.|.+++.+++.+.+++.+.+......|++. ..+ ||+++++++.+.+|+++++++|++|+|+++++.+++++
T Consensus 29 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~ 106 (390)
T 1d2f_A 29 DLLPFTISDMDFATAPCIIEALNQRLMHGVFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQ 106 (390)
T ss_dssp -CEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHH
T ss_pred CeeEeeecCCCCCCCHHHHHHHHHHHhCCCCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHH
Confidence 579999999988889999999999987666788654 778 99999999998889888899999999999999999999
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCC-CCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHHHHH
Q 012124 174 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE-NFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 174 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
++++||+|++++|+|+++...++..|++++.+|++.++ +|.+|++.|++++++ ++++|++++||||||.++|.+++++
T Consensus 107 l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~ 186 (390)
T 1d2f_A 107 WSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEI 186 (390)
T ss_dssp SSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHH
T ss_pred hcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHH
Confidence 99999999999999999999999999999999987653 567999999999975 8999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC-HHHHHHHHHHhh-h
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQS-Q 329 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~-~ 329 (470)
|+++|++| |++||+||+|.++.+++....++..++... ..+ +.||||.+|++|+|+||++++ +++++.+..... .
T Consensus 187 l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~-~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~ 263 (390)
T 1d2f_A 187 MADLCERH-GVRVISDEIHMDMVWGEQPHIPWSNVARGD-WAL-LTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGR 263 (390)
T ss_dssp HHHHHHHT-TCEEEEECTTTTCBCSSSCCCCGGGTCCSS-EEE-EECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTT
T ss_pred HHHHHHHc-CCEEEEEccccccccCCCCCcCHHHcchhh-Hhh-ccCccHhhcccChhheEEEECCHHHHHHHHHHHhhh
Confidence 99999999 999999999999988765556666665322 123 999999999899999999985 788888887665 4
Q ss_pred ccC-CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCCeecCCCceEEEeeeccCc-cCCcccCC
Q 012124 330 FTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTY-YGSEAEGF 406 (470)
Q Consensus 330 ~~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~ 406 (470)
..+ +++++.|.++.++++. ..+++++.++.++++++.+.+.|++ +||+.+..+.+++++|++++.. .
T Consensus 264 ~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 333 (390)
T 1d2f_A 264 DGLSSPSVLALTAHIAAYQQ---GAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNI------- 333 (390)
T ss_dssp SCCCSCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGCC-------
T ss_pred cccCCCCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecCCccEEEEEEccccCC-------
Confidence 444 6889999999888886 3678999999999999999999998 7889888889999999999753 2
Q ss_pred CCCCCHHHHHHHHHHcCCEEEECCCCCC--CCCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 407 GKIENSESLCRYLLDKAQVALVPGDAFG--DDTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 407 ~~~~~~~~l~~~L~~~~gI~v~pg~~f~--~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
+..++.+.|++++||.+.||..|+ .++++||+++.+++++++++++|++++++++
T Consensus 334 ----~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l~~~~ 390 (390)
T 1d2f_A 334 ----DDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR 390 (390)
T ss_dssp ----CHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred ----CHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHhhC
Confidence 677899988866799999999886 3579999999988999999999999998753
No 37
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=100.00 E-value=2.5e-49 Score=396.52 Aligned_cols=362 Identities=25% Similarity=0.404 Sum_probs=307.2
Q ss_pred CCeEEccCCCC----CCCChHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHHHH------HcCCCCCCCcEEEecC
Q 012124 94 VSVIRLAAGEP----DFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKE------ENGLSYTPDQILVSNG 162 (470)
Q Consensus 94 ~~~i~l~~g~~----~~~~~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l~~------~~g~~~~~~~i~it~g 162 (470)
+++|+|+.|.| ++.+++.+.+++.+.+... ...|++..|..+||+++++++.+ .+|+++++++|++|+|
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g 112 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSG 112 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESH
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCC
Confidence 57899999997 4666899999999998764 46798888999999999999983 2577778899999999
Q ss_pred hHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCccc
Q 012124 163 AKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGS 242 (470)
Q Consensus 163 ~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~ 242 (470)
+++++.+++++++++||+|++++|+|+++...++..|++++.++++.++++.+|++.|+++++++++++++++|+||||.
T Consensus 113 ~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~ 192 (416)
T 1bw0_A 113 GSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGS 192 (416)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCC
T ss_pred hHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhccCCeEEEEeCCCCCCCc
Confidence 99999999999999999999999999999999999999999999876556789999999999888999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCC----CcccccccCCCCCceEEEeccCcccccccceeeEEEcCHH
Q 012124 243 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA----THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 318 (470)
Q Consensus 243 ~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~----~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~ 318 (470)
++|.+++++|+++|++| |++||+||+|.++.|++. ...++..++. .+++++++||||.++++|+|+||++++++
T Consensus 193 ~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~Glr~G~~~~~~~ 270 (416)
T 1bw0_A 193 NFSRKHVEDIVRLAEEL-RLPLFSDEIYAGMVFKGKDPNATFTSVADFET-TVPRVILGGTAKNLVVPGWRLGWLLYVDP 270 (416)
T ss_dssp CCCHHHHHHHHHHHHHH-TCCEEEECTTTTCBCCSSCTTCCCCCTTSSCC-SCCEEEEEESTTTTSCGGGCCEEEEEECT
T ss_pred ccCHHHHHHHHHHHHHc-CCEEEEEccccccccCCCCCCCCccCHHHccC-CCcEEEEecchhhCCCCCceEEEEEeeCc
Confidence 99999999999999999 999999999999888765 3455555554 45789999999999889999999998763
Q ss_pred --HHHHHH----HHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEe
Q 012124 319 --FVAACN----KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 392 (470)
Q Consensus 319 --~~~~l~----~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~ 392 (470)
+++.+. ... ...++++++.|.++.++|+.. ...++++.+++++++++++.+.|++++|+.+..|.+|+|+|
T Consensus 271 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~ 347 (416)
T 1bw0_A 271 HGNGPSFLEGLKRVG-MLVCGPCTVVQAALGEALLNT--PQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLM 347 (416)
T ss_dssp TCSCHHHHHHHHHHH-HHHTCSCHHHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEE
T ss_pred hhhHHHHHHHHHHHh-ccccCCCcHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEE
Confidence 444333 221 134578999999999999853 26788999999999999999999998889888788899999
Q ss_pred eeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhCC
Q 012124 393 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~~ 466 (470)
++++... .....+..++++.|++++||.+.||..|+.++++|++++.+++++++++++|++++++.+.
T Consensus 348 ~~~~~~~------~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~~~~e~l~~~l~~l~~~l~~~~~ 415 (416)
T 1bw0_A 348 SRIDLEK------YRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAVERIKAFCQRHAA 415 (416)
T ss_dssp EEECGGG------BSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHHHHBC
T ss_pred EeCCHHH------cCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhhc
Confidence 9886310 0000157788888875669999999999888899999988999999999999999987653
No 38
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=100.00 E-value=4.1e-49 Score=403.13 Aligned_cols=354 Identities=20% Similarity=0.288 Sum_probs=293.7
Q ss_pred hHHHHHHHHHHHHc----CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc-CCCCeEEE
Q 012124 109 PVLIAEAGINAIRE----GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-SPGDEVII 183 (470)
Q Consensus 109 ~~~~~~a~~~~~~~----~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~-~~gd~Vlv 183 (470)
|..+++++.+.+.. ....|+++.|..+||+++++++.+.+|+++++++|++|+|+++++..++.+++ ++||+|++
T Consensus 108 p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv 187 (500)
T 3tcm_A 108 SADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILV 187 (500)
T ss_dssp CHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEE
T ss_pred CHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEE
Confidence 45566666777765 45789999999999999999999989998999999999999999999999998 89999999
Q ss_pred cCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------CceEEEEcCCCCCcccCCCHHHHHHHHHHHH
Q 012124 184 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVA 257 (470)
Q Consensus 184 ~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~ 257 (470)
++|+|+++...++..|++++.++++.+++|.+|++.|++++++ ++++|++++||||||.++|.+++++|+++|+
T Consensus 188 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~ 267 (500)
T 3tcm_A 188 PIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCK 267 (500)
T ss_dssp EESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred eCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999887889999999999975 7899999999999999999999999999999
Q ss_pred hCCCEEEEEeccccccccCCC-Ccccccc----cC--CCCCceEEEeccCccc-ccccceeeEEEc---CHHHHHHHHHH
Q 012124 258 KHPRLLVLSDEIYEHIIYAPA-THTSFAS----LP--GMWERTLTVNGFSKAF-AMTGWRLGYIAG---PKHFVAACNKI 326 (470)
Q Consensus 258 ~~~~~~iI~Dd~~~~~~~~~~-~~~~~~~----~~--~~~~~~i~i~S~sK~~-~~~G~r~G~~~~---~~~~~~~l~~~ 326 (470)
+| +++||+||+|+++.|++. ...++.. +. ....++|+++||||.+ |++|+|+||+++ ++++++.+.+.
T Consensus 268 ~~-~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~ 346 (500)
T 3tcm_A 268 NE-GLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKI 346 (500)
T ss_dssp HH-TCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHH
T ss_pred Hc-CCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHH
Confidence 99 999999999999998643 3444432 21 1234689999999999 889999999998 89999999887
Q ss_pred hhhccCCCChHHHHHHHHHHhcCCC-------ChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeecc--C
Q 012124 327 QSQFTSGASSISQKAGVAALGLGYA-------GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS--T 397 (470)
Q Consensus 327 ~~~~~~~~~~~~q~a~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~--~ 397 (470)
.. ...+++.+.|.++..++..... ..++.+++++.++++++.+.+.|++++|+++..|++|||+|+++. .
T Consensus 347 ~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~lp~ 425 (500)
T 3tcm_A 347 AS-VNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQ 425 (500)
T ss_dssp HH-TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTTEECCEECCCH
T ss_pred Hh-cccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEEEEeeeecCch
Confidence 64 5678899999999999974220 135677888999999999999999999999999999999996553 2
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 398 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
....... ..+..+...++.++++++||.+.||+.|+. .++||++++.+++++++++++|++++++++
T Consensus 426 ~~~~~~~-~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~i~~l~~~~~~~~ 495 (500)
T 3tcm_A 426 KAIEAAK-AANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEAFM 495 (500)
T ss_dssp HHHHHHH-HHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESCSCTTTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHH-hcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 1000000 000012334456677777999999999984 358999999988999999999999987653
No 39
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=100.00 E-value=2e-49 Score=399.66 Aligned_cols=372 Identities=19% Similarity=0.213 Sum_probs=320.5
Q ss_pred CchHHHHHHHHHHHH-hcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCC-CCCCCCcCcHHHHHHHHHHHHHHcCCCCC
Q 012124 76 PSKTVAITDQATALA-QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGF-TRYTPNAGTLELRSAICHKLKEENGLSYT 153 (470)
Q Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~-~~y~~~~g~~~lr~~ia~~l~~~~g~~~~ 153 (470)
..+...+........ ..|+++|+|+.|.|++++++.+++++.+.+.... ..|++..|..++|+++++++.+.+|++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~ 104 (437)
T 3g0t_A 25 MASIRDLVALVTNLEKATGTKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIP 104 (437)
T ss_dssp GCCHHHHHHHHHHHHHHHTCCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCC
T ss_pred CcHHHHHHHHHHHHHHhcCCCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCC
Confidence 344555555444433 4678899999999999889999999999988665 88988899999999999999999999999
Q ss_pred CCcEEEecChHHHHHHHHHHhc--CCCC--eEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhc-cCCc
Q 012124 154 PDQILVSNGAKQSILQAVLAVC--SPGD--EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL-TEKS 228 (470)
Q Consensus 154 ~~~i~it~g~~~al~~~~~~l~--~~gd--~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~ 228 (470)
+++|++|+|+++++.+++.+++ ++|| +|++++|+|+++...++..|++++.++++ ++++.+|++.|++++ ++++
T Consensus 105 ~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~~~~ 183 (437)
T 3g0t_A 105 ARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLF-EYRGEKLREKLESYLQTGQF 183 (437)
T ss_dssp GGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGG-GGCTTHHHHHHHHHHTTTCC
T ss_pred cccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeec-CCCCccCHHHHHHHHhcCCc
Confidence 9999999999999999999998 9999 99999999999999999999999999997 456778999999999 7789
Q ss_pred eEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcc----cc-cccCCCCCceEEEeccCccc
Q 012124 229 RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT----SF-ASLPGMWERTLTVNGFSKAF 303 (470)
Q Consensus 229 ~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~----~~-~~~~~~~~~~i~i~S~sK~~ 303 (470)
++|++++||||||.+++.+++++|+++|++| |++||+||+|+++.+++.... ++ ..++...+++++++||||.+
T Consensus 184 ~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 262 (437)
T 3g0t_A 184 CSIIYSNPNNPTWQCMTDEELRIIGELATKH-DVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAF 262 (437)
T ss_dssp CEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTT
T ss_pred eEEEEeCCCCCCCCcCCHHHHHHHHHHHHHC-CcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCC
Confidence 9999999999999999999999999999999 999999999999887632111 11 44433368899999999999
Q ss_pred ccccceeeEEEcCHHHHH-H-----------------HHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 012124 304 AMTGWRLGYIAGPKHFVA-A-----------------CNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365 (470)
Q Consensus 304 ~~~G~r~G~~~~~~~~~~-~-----------------l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~ 365 (470)
+++|+|+||+++++++++ . +........++++.+.|.++..+|+.+...+.++++.++++++
T Consensus 263 ~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 342 (437)
T 3g0t_A 263 SYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGR 342 (437)
T ss_dssp SCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHH
T ss_pred CCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHH
Confidence 999999999999999998 7 7776666677899999999999998632112238899999999
Q ss_pred HHHHHHHHhccCCCCeec------CC-CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC--
Q 012124 366 RRDFLVKSFGELEGVKMS------EP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD-- 436 (470)
Q Consensus 366 ~~~~l~~~L~~~~g~~~~------~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~-- 436 (470)
+++.+.+.|+++ |+.+. .| .+++|+|++++.. +..++++.|.++ ||.+.||..|+..
T Consensus 343 ~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~L~~~-gi~v~~~~~~~~~~~ 408 (437)
T 3g0t_A 343 KARIMKKMFLDN-GFNIVYDKDGNEPLADGFYFTVGYKGM------------DSSKLIEKFVRY-GMCAITLKTTGSKRN 408 (437)
T ss_dssp HHHHHHHHHHTT-TEEESSCEETTEECCSSSEEEEEETTC------------CHHHHHHHHHHT-TEECEESTTTTCCCT
T ss_pred HHHHHHHHHHHc-CCEEeccccCCCCCceeEEEEEecCCC------------CHHHHHHHHHHc-CeEEeeccccCCCCC
Confidence 999999999998 88887 34 8899999999832 788999998876 9999999988753
Q ss_pred CcEEEEeec-CHHHHHHHHHHHHHHHHh
Q 012124 437 TCIRISYAA-SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 437 ~~iRls~~~-~~~~i~~~l~~l~~~l~~ 463 (470)
+++|++++. +++++++++++|++++++
T Consensus 409 ~~iRis~~~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 409 EAMRICTSLLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp TCEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred CEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 789999998 899999999999998764
No 40
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=100.00 E-value=1.5e-50 Score=406.13 Aligned_cols=373 Identities=14% Similarity=0.175 Sum_probs=292.4
Q ss_pred CCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccccCccccccccCCchHHHHHHHHHHHHhcCCCeEE
Q 012124 22 KIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIR 98 (470)
Q Consensus 22 ~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (470)
-|||.|++|++|+++.+| +|.+|.++| .+|+
T Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~----------------------------------------------~~i~ 36 (422)
T 3d6k_A 3 AMSLKDYDAARLAQVREEVTAKYAELKAKN----------------------------------------------LSLD 36 (422)
T ss_dssp ---------------CHHHHHHHHHHHHTT----------------------------------------------CCEE
T ss_pred cccccCCCHHHHHhhHHHHHHHHHHHhccC----------------------------------------------CeEe
Confidence 489999999999998887 666665443 1389
Q ss_pred ccCCCCC---CCChHHHHHHHHHHH--Hc--CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH--HH
Q 012124 99 LAAGEPD---FDTPVLIAEAGINAI--RE--GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI--LQ 169 (470)
Q Consensus 99 l~~g~~~---~~~~~~~~~a~~~~~--~~--~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al--~~ 169 (470)
|+.|.|+ +++++.+++++.+.+ .. ....|+++.|.++||++|++++ + +++++|++|+|+++++ .+
T Consensus 37 l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~----~--~~~~~i~~t~G~~~al~l~~ 110 (422)
T 3d6k_A 37 LTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEAL----G--LPADLVVAQDGSSLNIMFDL 110 (422)
T ss_dssp CCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHH----T--CCGGGEEECSSCHHHHHHHH
T ss_pred CCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHh----C--CChhHEEEecchHHHHHHHH
Confidence 9999998 666767777776553 12 2568999999999999999998 3 5789999999999997 67
Q ss_pred HHHHhcCC------------CCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEE-EcC
Q 012124 170 AVLAVCSP------------GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLI-LCS 235 (470)
Q Consensus 170 ~~~~l~~~------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~-l~~ 235 (470)
++..+..+ +|+|++++|+|+++...++..|++++.+|++.+ ++|++.|++++++ ++++|+ +++
T Consensus 111 ~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~~~~~~v~~~~~ 187 (422)
T 3d6k_A 111 ISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTDE---GPDMGVVRELVKDPQVKGMWTVPV 187 (422)
T ss_dssp HHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT---EECHHHHHHHHTSTTEEEEEECCS
T ss_pred HHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCCC---CCCHHHHHHHHhcCCCeEEEEcCC
Confidence 77877766 347999999999999999999999999999753 3999999999975 789888 699
Q ss_pred CCCCcccCCCHHHHHHHHHHHH-hCCCEEEEEeccccc--cccCCCCccccccc---CCCCCceEEEeccCcccccccce
Q 012124 236 PSNPTGSVYPKNLLDEIARIVA-KHPRLLVLSDEIYEH--IIYAPATHTSFASL---PGMWERTLTVNGFSKAFAMTGWR 309 (470)
Q Consensus 236 p~nPtG~~~s~~~~~~l~~~~~-~~~~~~iI~Dd~~~~--~~~~~~~~~~~~~~---~~~~~~~i~i~S~sK~~~~~G~r 309 (470)
||||||.++|.+++++|+++|+ +| |++||+||+|.+ +.+++....++..+ ....+++++++||||. +++|+|
T Consensus 188 ~~NPtG~~~~~~~l~~l~~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~Glr 265 (422)
T 3d6k_A 188 FGNPTGVTFSEQTCRELAEMSTAAP-DFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THAGSG 265 (422)
T ss_dssp SCTTTCCCCCHHHHHHHHHCCCSST-TCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhcc-CCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cCcccc
Confidence 9999999999999999999999 99 999999999986 43333233344322 1235789999999999 569999
Q ss_pred eeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHHHHHhcc----CCCCeecC
Q 012124 310 LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL-GYAGGEVVSKMVKAFRERRDFLVKSFGE----LEGVKMSE 384 (470)
Q Consensus 310 ~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~ 384 (470)
+||+++++++++.+.......+++++.+.|.++.++|+. +.+ .++++++++.|+++++.+.+.|.+ ++++.+..
T Consensus 266 iG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~ 344 (422)
T 3d6k_A 266 VSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGL-KAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTS 344 (422)
T ss_dssp CEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECC
T ss_pred eEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchH-HHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeC
Confidence 999999999999999888888888999999999999986 433 578899999999999988888865 33467778
Q ss_pred CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC-CCCCC-----CCCcEEEEeec-CHHHHHHHHHHH
Q 012124 385 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP-GDAFG-----DDTCIRISYAA-SLTTLQAAVERI 457 (470)
Q Consensus 385 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~p-g~~f~-----~~~~iRls~~~-~~~~i~~~l~~l 457 (470)
|.+|+|+|++++.. +..++.+.| +++||.+.| |..|. .++++|||++. +++++++++++|
T Consensus 345 p~~g~~~~~~~~~~------------~~~~~~~~l-~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~~~~e~i~~~~~~l 411 (422)
T 3d6k_A 345 PTGGYFISVDVVPG------------TASRVVELA-KEAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAELEVAMDGF 411 (422)
T ss_dssp CSBSSCEEEEESTT------------CHHHHHHHH-HHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHH
T ss_pred CCcceEEEEECCCC------------CHHHHHHHH-HHCCeEEEcCccccCCCCCCCCCeEEEecCCCCHHHHHHHHHHH
Confidence 88999999999753 456676655 456999999 45563 25799999995 999999999999
Q ss_pred HHHHHhhC
Q 012124 458 KKGLLTLR 465 (470)
Q Consensus 458 ~~~l~~~~ 465 (470)
+++++++.
T Consensus 412 ~~~l~~~~ 419 (422)
T 3d6k_A 412 ATCVLMAA 419 (422)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987653
No 41
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=100.00 E-value=2.3e-48 Score=391.49 Aligned_cols=376 Identities=24% Similarity=0.392 Sum_probs=312.1
Q ss_pred cCccccccccCC-chHHHHHHHHHHHH--hcCCCeEEccCCCCCCCChHHHHHHHHHHHHc-----CCCCCCCCcCcHHH
Q 012124 65 VSLSPRVNAVKP-SKTVAITDQATALA--QAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-----GFTRYTPNAGTLEL 136 (470)
Q Consensus 65 ~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~-----~~~~y~~~~g~~~l 136 (470)
..+++.+..+++ +....+.+...... .+++++|+|+.|++++++|+.+++++.+++.. +...|++..|..+|
T Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l 103 (432)
T 3ei9_A 24 VSRNSNMSKLQAGYLFPEIARRRSAHLLKYPDAQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPL 103 (432)
T ss_dssp CCCCHHHHHCCSSCHHHHHHHHHHHHHHHCTTCCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHH
T ss_pred cccChHHHhCCCCccHHHHHHHHHhhhhcCCCCCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHH
Confidence 345555666665 35555544433322 24568999999999998899999999998873 45689888999999
Q ss_pred HHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCC------------EEEE
Q 012124 137 RSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA------------TPVI 204 (470)
Q Consensus 137 r~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~------------~~~~ 204 (470)
|+++++++.+ ++.+++++|++|+|+++++.++ ..++++||.|++++|+|+++...++..|. +++.
T Consensus 104 ~~~ia~~~~~--~~~~~~~~i~~t~G~~~al~~l-~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 180 (432)
T 3ei9_A 104 RAAIAKTFYG--GLGIGDDDVFVSDGAKCDISRL-QVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEY 180 (432)
T ss_dssp HHHHHHHHHT--TTTCCGGGEEEESCHHHHHHHH-HHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEE
T ss_pred HHHHHHHHHc--cCCCCcceEEECCChHHHHHHH-HHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEE
Confidence 9999999973 6667889999999999999974 77789999999999999999999988884 6788
Q ss_pred ecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccc
Q 012124 205 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 284 (470)
Q Consensus 205 v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~ 284 (470)
++++.++++..|++. .+++++|++++||||||.++|.+++++|+++|++| |++||+||+|.++.+++. ..++.
T Consensus 181 ~~~~~~~~~~~~l~~-----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~-~~~li~Dea~~~~~~~~~-~~~~~ 253 (432)
T 3ei9_A 181 MRCTPENGFFPDLST-----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKN-GSIIVYDSAYAMYMSDDN-PRSIF 253 (432)
T ss_dssp EECCGGGTTSCCGGG-----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTGGGCCSSC-CSSGG
T ss_pred eccCcccCCcCChhh-----CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc-CcEEEEccchHhhccCCC-CCChh
Confidence 888765555555443 35789999999999999999999999999999999 999999999999887753 34555
Q ss_pred ccCCCCCceEEEeccCcccccccceeeEEEcCHHH--------HHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHH
Q 012124 285 SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF--------VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVV 356 (470)
Q Consensus 285 ~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~--------~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~ 356 (470)
.++...+++|+++||||.+|++|+|+||+++++++ ++.+.........+++++.|.++.+++... ..+++
T Consensus 254 ~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~ 331 (432)
T 3ei9_A 254 EIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPE--GLEAM 331 (432)
T ss_dssp GSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHH--HHHHH
T ss_pred hcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcc--cHHHH
Confidence 55544578999999999999999999999999988 788877766666778999999999888631 24678
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-
Q 012124 357 SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD- 435 (470)
Q Consensus 357 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~- 435 (470)
+++++.++++++++.+.|+++ |+.+..+.+++|+|++++.. +..++++.|++++||.+.||..|+.
T Consensus 332 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ll~~~gv~v~~g~~f~~~ 398 (432)
T 3ei9_A 332 HKVIGFYKENTNIIIDTFTSL-GYDVYGGKNAPYVWVHFPNQ------------SSWDVFAEILEKTHVVTTPGSGFGPG 398 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCEEECSSSSEEEEECTTS------------CHHHHHHHHHHHHCEECEEGGGGCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CceecCCCcceEEEEECCCC------------CHHHHHHHHHHHCCEEEeCchHhCCC
Confidence 999999999999999999988 88888777888999999843 6788888888877999999999875
Q ss_pred -CCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 436 -DTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 436 -~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
++++||+++.+++++++++++|++--+..+
T Consensus 399 ~~~~iRis~~~~~e~l~~~l~rl~~~~~~~~ 429 (432)
T 3ei9_A 399 GEGFVRVSAFGHRENILEACRRFKQLYKHHH 429 (432)
T ss_dssp GTTEEEEECCSCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCEEEEEecCCHHHHHHHHHHHHHHhhhcc
Confidence 579999998899999999999998765443
No 42
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=100.00 E-value=1.2e-48 Score=392.11 Aligned_cols=354 Identities=24% Similarity=0.352 Sum_probs=316.1
Q ss_pred CCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHH
Q 012124 93 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 172 (470)
Q Consensus 93 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~ 172 (470)
++++|+|+.|++++++++.+.+++.+++.+....|++. ..++++++++++.+.+|+++++++|++|+|++++++.+++
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~ 137 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINYGREHIFGYNYF--NDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQ 137 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHHHHHCCSSCBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHH
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHHHhcCCcCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHH
Confidence 56889999999999999999999999998777778654 3899999999999999988889999999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCc-CCCCCccCHHhHhhhcc-CCceEEEEcCCCCCcccCCCHHHHH
Q 012124 173 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR-ISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLD 250 (470)
Q Consensus 173 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG~~~s~~~~~ 250 (470)
++.++||+|++++|+|+++...++..|.+++.+|++ .++++.+|++.|+++++ +++++|++++||||||.+++.++++
T Consensus 138 ~~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~ 217 (421)
T 3l8a_A 138 AFSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLI 217 (421)
T ss_dssp HHSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHH
T ss_pred HhcCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHH
Confidence 999999999999999999999999999999999987 55667799999999997 7899999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC-CCceEEEeccCcccccccceeeEEEcC-HHHHHHHHHHhh
Q 012124 251 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQS 328 (470)
Q Consensus 251 ~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~S~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~ 328 (470)
+|+++|++| |++||+||+|.++.+++....++..+..+ .++++++.|+||.+|++|+|+||++++ +++++.+.....
T Consensus 218 ~l~~l~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~ 296 (421)
T 3l8a_A 218 KIAELCKKH-GVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQL 296 (421)
T ss_dssp HHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHH
Confidence 999999999 99999999999999887766777776542 578999999999999899999999998 899998887664
Q ss_pred hc-cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCC
Q 012124 329 QF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG 407 (470)
Q Consensus 329 ~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 407 (470)
.. .++++++.+.++.++++. .+++++++++.++++++++.+.|++++++.+..+.+++++|++++..-
T Consensus 297 ~~~~~~~n~~~~~a~~aal~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~~-------- 365 (421)
T 3l8a_A 297 ANNQHEVPTVGMIATQAAFQY---GKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPEGTYLVWLDFSAYA-------- 365 (421)
T ss_dssp HTTCSCCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECCSBSSEEEEECGGGT--------
T ss_pred hcccCCCCHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCCCeeEEEEEeccccC--------
Confidence 33 447899999999999986 478899999999999999999998878899999999999999997520
Q ss_pred CCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 408 KIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 408 ~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
.+..++.+.|++++||.+.||..|+. ++++||+++.+++++++++++|+++++
T Consensus 366 --~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 366 --IAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVATPKNTVQEALSRIISVFG 420 (421)
T ss_dssp --CCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHC-
T ss_pred --CCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 15678888888777999999998875 589999999999999999999998865
No 43
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=100.00 E-value=7.1e-50 Score=411.29 Aligned_cols=419 Identities=19% Similarity=0.232 Sum_probs=313.7
Q ss_pred cccCCcccc---cccccccc--------------chhhhhhcCCCcccccccC-------cc----ccccccCC--chHH
Q 012124 31 VSFPSRYLH---NFNLNNDR--------------RVLRVMACSGVEEVQVDVS-------LS----PRVNAVKP--SKTV 80 (470)
Q Consensus 31 ~~l~vs~~T---Ay~~L~~~--------------G~i~s~~g~sG~~V~~~~~-------~~----~~~~~~~~--~~~~ 80 (470)
+.-++|..| ++.+|.++ |||+++++ |||||..... +. .....+++ ....
T Consensus 7 ~~~~~s~~~~~~~~~~~a~~~~~~~~l~~~~~np~~i~~~pr-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (546)
T 2zy4_A 7 SLAKLSPFELKDELIKIASSDGNRLMLNAGRGNPNFLATTPR-RAFFRLGLFAAAESELSYSYMTTVGVGGLAKIDGIEG 85 (546)
T ss_dssp CC---CHHHHHHHHHHHCCSHHHHHHHHHCCCCCSEEECHHH-HHHHHHHHHHHHHHHTTCCSCCSSCEEECCCSTTHHH
T ss_pred HHhccCcHhhHHHHHHHHhhcccceeeeCCCCCchhhccChH-HHHHHHHhhhhhhhhhhhhhhhhhhhccCCccccchh
Confidence 456788888 88899999 99999999 9999974321 11 12333333 3333
Q ss_pred HHHHHHHHHHh-cCC----CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHH-HHcCCC---
Q 012124 81 AITDQATALAQ-AGV----SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK-EENGLS--- 151 (470)
Q Consensus 81 ~~~~~~~~~~~-~~~----~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~-~~~g~~--- 151 (470)
.+.+....... +|. .+|+|+.|.|++ +++.+.+++.+.+. ...|+++.|..+||+++++++. +.++..
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~i~l~~g~~~~-~~~~~~~al~~~~~--~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~ 162 (546)
T 2zy4_A 86 RFERYIAENRDQEGVRFLGKSLSYVRDQLGL-DPAAFLHEMVDGIL--GCNYPVPPRMLNISEKIVRQYIIREMGADAIP 162 (546)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHH--TCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSC
T ss_pred HHHHHHHhcCCCCcchhHHhhhecccCCCCC-CChHHHHHHHHhhh--cCCCCCCcCCHHHHHHHHHHHHHHhccCCCCC
Confidence 33333322211 111 278999999987 45667777777664 3679888999999999887664 433332
Q ss_pred CCCCcEEEecChHHHHHHHHHH-----hcCCCCeEEEcCCCCCChHHHHHH--cCCEEEEecCcCCCCCccCHHhHhhhc
Q 012124 152 YTPDQILVSNGAKQSILQAVLA-----VCSPGDEVIIPAPFWVSYPEMARI--ADATPVILPTRISENFLLDPKVLESKL 224 (470)
Q Consensus 152 ~~~~~i~it~g~~~al~~~~~~-----l~~~gd~Vlv~~p~y~~~~~~~~~--~g~~~~~v~~~~~~~~~~d~~~l~~~l 224 (470)
+++++|++|+|+++++..++.+ +++|||+|++++|+|+.|...+.. .|++++.++.+++++|.+|++.|++++
T Consensus 163 ~~~~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~ 242 (546)
T 2zy4_A 163 SESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLK 242 (546)
T ss_dssp GGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGG
T ss_pred CCcceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhh
Confidence 2568999999999999999988 478999999999999999987554 479999999988788899999999998
Q ss_pred cCCceEEEEcCCCCCcccCCCHHHHHHHHHHH--HhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcc
Q 012124 225 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIV--AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 302 (470)
Q Consensus 225 ~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~--~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~ 302 (470)
++++++|++++||||||.+++.+++++|+++| +++ |++||+||+|.++.++ ..++.... .+++|+++||||.
T Consensus 243 ~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~-~~~ii~De~y~~~~~~---~~s~~~~~--~~~~i~~~S~SK~ 316 (546)
T 2zy4_A 243 DPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRP-DLMILTDDVYGTFADD---FQSLFAIC--PENTLLVYSFSKY 316 (546)
T ss_dssp STTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCT-TCEEEEECTTGGGSTT---CCCHHHHC--GGGEEEEEESTTT
T ss_pred CCCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccC-CcEEEEeCcchhhccc---CcCHHHhC--CCCEEEEEeCccc
Confidence 88999999999999999999999999999999 788 9999999999998753 33444443 3789999999999
Q ss_pred cccccceeeEEEcCHH-HHHHHHHH-------------h-----------------------hhccCCCChHHHHHH---
Q 012124 303 FAMTGWRLGYIAGPKH-FVAACNKI-------------Q-----------------------SQFTSGASSISQKAG--- 342 (470)
Q Consensus 303 ~~~~G~r~G~~~~~~~-~~~~l~~~-------------~-----------------------~~~~~~~~~~~q~a~--- 342 (470)
+|++|+|+||++++++ +++.+.+. . .....+.+.+.|.++
T Consensus 317 ~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~ 396 (546)
T 2zy4_A 317 FGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALF 396 (546)
T ss_dssp TTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHH
T ss_pred cCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHH
Confidence 9999999999999875 77776321 1 122346788888874
Q ss_pred --HHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccC-C----CCCCCHHHH
Q 012124 343 --VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEG-F----GKIENSESL 415 (470)
Q Consensus 343 --~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~-~----~~~~~~~~l 415 (470)
.+++++ .+.|.+++++.|+++++.+.+.|. + ++.+.++.+|||+|++++........+ + ....++.++
T Consensus 397 a~~all~~---~~~~~~~~r~~~~~r~~~l~~~L~-~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~ 471 (546)
T 2zy4_A 397 SLFALMDE---ADEYKHTLKQLIRRRETTLYRELG-M-PPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDM 471 (546)
T ss_dssp HHHHHHCT---TCHHHHHHHHHHHHHHHHHHGGGT-S-SCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHH
T ss_pred HHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcC-C-CcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHH
Confidence 344554 368899999999999999999996 4 566667899999999986310000000 0 000023444
Q ss_pred HHHHHHcCCEEEECCCCCCC-CCcEEEEeec-CHHHHHHHHHHHHHHHHhh
Q 012124 416 CRYLLDKAQVALVPGDAFGD-DTCIRISYAA-SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 416 ~~~L~~~~gI~v~pg~~f~~-~~~iRls~~~-~~~~i~~~l~~l~~~l~~~ 464 (470)
+.++++++||.+.||..|+. ++++||+++. +++++++++++|+++++++
T Consensus 472 l~~ll~~~gV~v~pG~~F~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~ 522 (546)
T 2zy4_A 472 LFRIADETGIVLLPGRGFGSNRPSGRASLANLNEYEYAAIGRALRKMADEL 522 (546)
T ss_dssp HHHHHHHHSCCCEESSCTTCSSCEEEEESSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEeCccccCCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 44555666999999999975 4689999998 8999999999999988754
No 44
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=100.00 E-value=1.3e-48 Score=391.55 Aligned_cols=371 Identities=17% Similarity=0.219 Sum_probs=302.9
Q ss_pred ccccCCchHHHHHHHHHHHHhc--CCCeEEccCCCC-----CCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHH
Q 012124 71 VNAVKPSKTVAITDQATALAQA--GVSVIRLAAGEP-----DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHK 143 (470)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~g~~-----~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~ 143 (470)
.....+.....+.....+.... +.++|+|+.|.| ++++++.+.+++.+........|++..|.++||++++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~ 92 (418)
T 3rq1_A 13 KGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKE 92 (418)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHCGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHhhhhhhcCCCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHH
Confidence 3344455666666666655554 668999999987 667788888887765443456798899999999999999
Q ss_pred HHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhh
Q 012124 144 LKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESK 223 (470)
Q Consensus 144 l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 223 (470)
+....+.. .+++|++|+|+++++..+++++++|||+|++++|+|+++...++..|++++.+|++.++ +.+|++.|+++
T Consensus 93 ~~~~~~~~-~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~~~d~~~l~~~ 170 (418)
T 3rq1_A 93 CFGNFRPE-GHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEH-NNFNHEAFQNR 170 (418)
T ss_dssp HHGGGCCS-SEEEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTT-SSBCHHHHHHH
T ss_pred HhcccCcc-ccccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCC-CCcCHHHHHHH
Confidence 97655532 23499999999999999999999999999999999999999999999999999996544 67999999999
Q ss_pred ccC----Cce-EEEEcCC-CCCcccCCCHHHHHHHHHHHH------hCCCEEEEEeccccccccCCCCcccccc-cCCCC
Q 012124 224 LTE----KSR-LLILCSP-SNPTGSVYPKNLLDEIARIVA------KHPRLLVLSDEIYEHIIYAPATHTSFAS-LPGMW 290 (470)
Q Consensus 224 l~~----~~~-~i~l~~p-~nPtG~~~s~~~~~~l~~~~~------~~~~~~iI~Dd~~~~~~~~~~~~~~~~~-~~~~~ 290 (470)
+++ +++ ++++++| |||||.+++.+++++|+++|+ +| |++||+||+|.++.+++....++.. .+...
T Consensus 171 l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~ 249 (418)
T 3rq1_A 171 VNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRN-NVIIGIDVAYLDYSGEKDEVRAFFNKFSHLP 249 (418)
T ss_dssp HHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSC-EEEEEEECTTGGGSSCHHHHHGGGGGGTTCC
T ss_pred HHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCC-CeEEEEecccccccCChHHHHHHHHHHHhcC
Confidence 974 566 7788999 999999999999999999999 89 9999999999998876533333332 23223
Q ss_pred Cc--eEEEeccCcccccccceeeEEEc---CHHHHHHHHHHhhhc----cCCCChHHHHHHHHHHhcCCC---ChHHHHH
Q 012124 291 ER--TLTVNGFSKAFAMTGWRLGYIAG---PKHFVAACNKIQSQF----TSGASSISQKAGVAALGLGYA---GGEVVSK 358 (470)
Q Consensus 291 ~~--~i~i~S~sK~~~~~G~r~G~~~~---~~~~~~~l~~~~~~~----~~~~~~~~q~a~~~~l~~~~~---~~~~~~~ 358 (470)
++ +|+++||||.+|++|+|+||+++ ++++++.+....... ..+++.+.|.++..+++++.. ..+++++
T Consensus 250 ~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 329 (418)
T 3rq1_A 250 KEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNC 329 (418)
T ss_dssp TTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44 68999999999999999999999 999999888765432 245889999999999986310 0234557
Q ss_pred HHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCc
Q 012124 359 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC 438 (470)
Q Consensus 359 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~ 438 (470)
+++.++++++.+.+.|+++ |+++..+.+|||+|++++ +..++++.|. ++||.+.||. ++
T Consensus 330 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~-~~gi~v~~g~-----~~ 388 (418)
T 3rq1_A 330 YYQLIRDRADIFKQEAAQV-GLPMLPYRGGFFITIPTD--------------SANAICEELK-KEHIYVIALA-----NG 388 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TCCCCCCCSSSEEEEECT--------------THHHHHHHHH-HTTEECEECS-----SE
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCCCCCCceEEEEcCCC--------------CHHHHHHHHH-hCCEEEecCC-----CC
Confidence 7889999999999999988 888889999999998874 5678888765 5599999983 68
Q ss_pred EEEEeec-CHHHHHHHHHHHHHHHHhhC
Q 012124 439 IRISYAA-SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 439 iRls~~~-~~~~i~~~l~~l~~~l~~~~ 465 (470)
+||+++. +++++++++++|+++++++.
T Consensus 389 iRis~~~~~~~~i~~~~~~l~~~l~~~~ 416 (418)
T 3rq1_A 389 IRIAACGIPKCQMTGLAEKIYNAMKSLG 416 (418)
T ss_dssp EEEEGGGSCHHHHTTHHHHHHHHHHHTT
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 9999986 99999999999999998765
No 45
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=100.00 E-value=5.9e-48 Score=381.97 Aligned_cols=365 Identities=29% Similarity=0.501 Sum_probs=304.1
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 146 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~ 146 (470)
++.++..++++....+.+.... +++|+|+.|.|++++++.+.+++.+++.. ...|++..|..+||+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-----~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~-- 74 (381)
T 1v2d_A 3 LHPRTEAAKESIFPRMSGLAQR-----LGAVNLGQGFPSNPPPPFLLEAVRRALGR-QDQYAPPAGLPALREALAEEF-- 74 (381)
T ss_dssp CCGGGGGC---CHHHHHHHHHH-----HTCEECCCCSCSSCCCHHHHHHHHHHTTT-SCSCCCTTCCHHHHHHHHHHH--
T ss_pred hhhhhhhcCccHHHHHHHHHhc-----CCeEEecCCCCCCCCCHHHHHHHHHHHHH-hcCCCCCCCCHHHHHHHHHhc--
Confidence 3445555655555444433322 35799999999988899999999998865 567988889999999999995
Q ss_pred HcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCc--CCCCCccCHHhHhhhc
Q 012124 147 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR--ISENFLLDPKVLESKL 224 (470)
Q Consensus 147 ~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~--~~~~~~~d~~~l~~~l 224 (470)
+ +++++|++|+|+++++.+++.+++++||+|++++|+|+++...++..|++++.++++ ++ ++.+|++.|++++
T Consensus 75 --~--~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~~d~~~l~~~l 149 (381)
T 1v2d_A 75 --A--VEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPE-GFRLDLSALEKAL 149 (381)
T ss_dssp --T--SCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETT-EEECCHHHHHTTC
T ss_pred --C--CChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCc-cCCcCHHHHHHhc
Confidence 3 467899999999999999999999999999999999999999999999999999986 33 3679999999999
Q ss_pred cCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccc
Q 012124 225 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 304 (470)
Q Consensus 225 ~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~ 304 (470)
++++++|++++|+||||.++|.+++++|+++|++| |++||+||+|.++.+ +....++..+ ..++++++.||||.++
T Consensus 150 ~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~-g~~~~~~~~~--~~~~~~~~~s~sK~~~ 225 (381)
T 1v2d_A 150 TPRTRALLLNTPMNPTGLVFGERELEAIARLARAH-DLFLISDEVYDELYY-GERPRRLREF--APERTFTVGSAGKRLE 225 (381)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBS-SSCCCCHHHH--CTTTEEEEEEHHHHTT
T ss_pred CcCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHc-CCEEEEEcCcccccc-CCCCCCHHHh--cCCCEEEEeechhhcC
Confidence 88899999999999999999999999999999999 999999999999887 4434455544 2578999999999999
Q ss_pred cccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC
Q 012124 305 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 384 (470)
Q Consensus 305 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 384 (470)
++|+|+||+++++++++.+........++++.+.|.++..+|+.+.. .++++++++.++++++++.+.|++. |+++..
T Consensus 226 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 303 (381)
T 1v2d_A 226 ATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARR-EGFYEALREGYRRRRDLLAGGLRAM-GLRVYV 303 (381)
T ss_dssp CGGGCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHT-TCCEEC
T ss_pred CcccceEEEEeCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCccc-HHHHHHHHHHHHHHHHHHHHHHHHC-CCEecC
Confidence 89999999999999999988877766778899999999999986321 5678899999999999999999986 888888
Q ss_pred CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEeecCHHHHHHHHHHHHHH
Q 012124 385 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIRISYAASLTTLQAAVERIKKG 460 (470)
Q Consensus 385 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~----~~~iRls~~~~~~~i~~~l~~l~~~ 460 (470)
+.+|+|+|+++++. + +. .+++++||.+.||..|+. ++++|++++.+++++++++++|+++
T Consensus 304 ~~~~~~~~~~~~~~------------~---~~-~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~~~~~i~~~~~~l~~~ 367 (381)
T 1v2d_A 304 PEGTYFLMAELPGW------------D---AF-RLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRV 367 (381)
T ss_dssp CSBSSEEEEECTTC------------C---HH-HHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHH
T ss_pred CCcceEEEEecChH------------h---HH-HHHHhCCEEEecchHhCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHH
Confidence 88899999998742 3 43 445566999999988864 5799999999999999999999999
Q ss_pred HHhhCC
Q 012124 461 LLTLRP 466 (470)
Q Consensus 461 l~~~~~ 466 (470)
+++.+.
T Consensus 368 l~~~r~ 373 (381)
T 1v2d_A 368 VNSPRE 373 (381)
T ss_dssp C-----
T ss_pred Hhhccc
Confidence 887664
No 46
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=100.00 E-value=1.6e-48 Score=390.26 Aligned_cols=370 Identities=16% Similarity=0.219 Sum_probs=304.8
Q ss_pred cccccccCCchHHHHHHHHHHHHhc--CCCeEEccCCCC-----CCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHH
Q 012124 68 SPRVNAVKPSKTVAITDQATALAQA--GVSVIRLAAGEP-----DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAI 140 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~g~~-----~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~i 140 (470)
+.+.....++....+.+...+.... ++++|+|+.|+| ++.+++.+.+++.+........|.+..|.+++|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~l 88 (413)
T 3t18_A 9 KRATWNNGPDLAFDINNKANAAIEKYGREAVINAALGTLLDDKGKIIALPSVYDRLDEMDRSHIASYAPIEGEKDYRKIV 88 (413)
T ss_dssp TTTCCCCCCCHHHHHHHHHHHHHHHHCGGGCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHH
T ss_pred hhcccCCCCChHHHHHHHHhhhhhhccccceEeccccCccCCCCCcCChHHHHHHHHhcCcccccCcCCCCCCHHHHHHH
Confidence 4555566677777777776666554 668999999997 777788888888764433456798889999999999
Q ss_pred HHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhH
Q 012124 141 CHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVL 220 (470)
Q Consensus 141 a~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l 220 (470)
++++....+.. ++++|++|+|+++++..++++++++||+|++++|+|+++...++..|++++.+|+..++ +++|++.|
T Consensus 89 a~~~~~~~~~~-~~~~i~~t~g~~~al~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~-~~~d~~~l 166 (413)
T 3t18_A 89 IDTLFGPYKPE-GYISAIATPGGTGAIRSAIFSYLDEGDPLICHDYYWAPYRKICEEFGRNFKTFEFFTDD-FAFNIDVY 166 (413)
T ss_dssp HHHHHGGGCCS-SEEEEEEESHHHHHHHHHHHHHCCSSCEEEEESSCCTHHHHHHHHHTCEEEEECCBCTT-SSBCHHHH
T ss_pred HHHHhcccCcc-ccCcEEEcCccHHHHHHHHHHhcCCCCEEEECCCCcccHHHHHHHhCCeEEEeeccCCC-CCcCHHHH
Confidence 99997655432 45599999999999999999999999999999999999999999999999999986444 67999999
Q ss_pred hhhccC----Cce-EEEEcCC-CCCcccCCCHHHHHHHHHHHH------hCCCEEEEEeccccccccCCCCcccccc-cC
Q 012124 221 ESKLTE----KSR-LLILCSP-SNPTGSVYPKNLLDEIARIVA------KHPRLLVLSDEIYEHIIYAPATHTSFAS-LP 287 (470)
Q Consensus 221 ~~~l~~----~~~-~i~l~~p-~nPtG~~~s~~~~~~l~~~~~------~~~~~~iI~Dd~~~~~~~~~~~~~~~~~-~~ 287 (470)
++++++ +++ ++++++| |||||.+++.+++++|+++|+ +| |++||+||+|.++.+++....++.. .+
T Consensus 167 ~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~ 245 (413)
T 3t18_A 167 KEAIDEGIRDSDRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDK-KITLIVDVAYLEFAGDGDQQRKFFEKFS 245 (413)
T ss_dssp HHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTC-EEEEEEECTTGGGSSSSSTTTGGGGGGT
T ss_pred HHHHHHHhhcCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCC-cEEEEEecccccccCChhhHHHHHHHHh
Confidence 999975 677 6778999 999999999999999999999 89 9999999999999887654444433 23
Q ss_pred CCCCc--eEEEeccCcccccccceeeEEEc---CHHHHHHHHHHhhhc----cCCCChHHHHHHHHHHhcCC---CChHH
Q 012124 288 GMWER--TLTVNGFSKAFAMTGWRLGYIAG---PKHFVAACNKIQSQF----TSGASSISQKAGVAALGLGY---AGGEV 355 (470)
Q Consensus 288 ~~~~~--~i~i~S~sK~~~~~G~r~G~~~~---~~~~~~~l~~~~~~~----~~~~~~~~q~a~~~~l~~~~---~~~~~ 355 (470)
...++ +|+++||||.+|++|+|+||+++ ++++++.+....... ..+++.+.|.++..+++++. + .++
T Consensus 246 ~~~~~~~~i~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~-~~~ 324 (413)
T 3t18_A 246 NLPRNLFVVVAFSMSKSHTAYGLRSGAAVGISSSKEIIEEFEASLAHSARCNWSNGTHAAQNILIELERAENKKIY-EQE 324 (413)
T ss_dssp TCCTTEEEEEEEEHHHHTTCGGGCCEEEEEEESCHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSHHHHHHH-HHH
T ss_pred hcCCCeeEEEEEecCccCCCcCcCcEEEEEecCCHHHHHHHHHHHHHhhhccccCCChHHHHHHHHHhcChHHHHH-HHH
Confidence 22334 58999999999999999999999 999999888765432 24578999999998887632 1 345
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC
Q 012124 356 VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD 435 (470)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~ 435 (470)
.+++++.++++++.+.+.|+++ |+++..+.+++|+|+++. +..++++.|. ++||.+.||
T Consensus 325 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~-~~gv~v~~g----- 383 (413)
T 3t18_A 325 LVDLRNMLKSRADVFVTAAKEN-KLTMIPYFGGFFTFIPTD--------------KAFDIVKDLE-KENIFTIPS----- 383 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCCBCCCSSSCEEEECS--------------CHHHHHHHHH-HTTEECEEC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCCccCCCceEEEEeCCC--------------CHHHHHHHHH-hCCEEEecC-----
Confidence 6778899999999999999988 899889999999998763 6778888775 559999997
Q ss_pred CCcEEEEeec-CHHHHHHHHHHHHHHHHhhC
Q 012124 436 DTCIRISYAA-SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 436 ~~~iRls~~~-~~~~i~~~l~~l~~~l~~~~ 465 (470)
++++||+++. +++++ +++|.+++++++
T Consensus 384 ~~~iRis~~~~~~~~~---l~~l~~~l~~~~ 411 (413)
T 3t18_A 384 AKGIRVAICGVGEEKI---PKLVQRLAFYTN 411 (413)
T ss_dssp SSEEEECTTTSCGGGH---HHHHHHHHHHHH
T ss_pred CCceEEEEeeCCHHHH---HHHHHHHHHHHh
Confidence 4789999997 66666 888888887764
No 47
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=100.00 E-value=6e-48 Score=384.45 Aligned_cols=370 Identities=26% Similarity=0.408 Sum_probs=294.4
Q ss_pred cccccccCC-chHHHHHHHHHHHH--hcCCCeEEccCCCCCCCChHHHHHHHHHHHHc-----CCCCCCCCcCcHHHHHH
Q 012124 68 SPRVNAVKP-SKTVAITDQATALA--QAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-----GFTRYTPNAGTLELRSA 139 (470)
Q Consensus 68 ~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~-----~~~~y~~~~g~~~lr~~ 139 (470)
++++..+.+ .....+.+...... ..++++|+|+.|++++++++.+.+++.+++.. ....|++..|..+||++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ 83 (400)
T 3asa_A 4 NPHFVSLTKNYLFADLQKRVAQFRLENPQHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQK 83 (400)
T ss_dssp CHHHHTCCCCCHHHHHHHHHHHHHHHCTTSCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHH
T ss_pred chhhhccCCcccHHHHHHHHHHhhhhcCCCceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHH
Confidence 444555544 33344444444332 24678999999999888889999999888764 24679888899999999
Q ss_pred HHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCE-EEEecCcCCCCCccCHH
Q 012124 140 ICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT-PVILPTRISENFLLDPK 218 (470)
Q Consensus 140 ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~-~~~v~~~~~~~~~~d~~ 218 (470)
+++++. +|+ +++++|++|+|+++++.+++. ++++||+|++++|+|+++...++..|++ ++.+|++.++++..|++
T Consensus 84 la~~l~--~g~-~~~~~v~~~~G~~~al~~~~~-~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~ 159 (400)
T 3asa_A 84 LSEDFY--RGF-VDAKEIFISDGAKVDLFRLLS-FFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFP 159 (400)
T ss_dssp HHHTTS--TTS-SCGGGEEEESCHHHHHHHHHH-HHCSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCCCC
T ss_pred HHHHHH--cCC-CCHHHEEEccChHHHHHHHHH-HcCCCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCcccChh
Confidence 999964 465 678999999999999998765 4589999999999999999999999999 99999875555444443
Q ss_pred hHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEec
Q 012124 219 VLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 298 (470)
Q Consensus 219 ~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S 298 (470)
+. +++++|++++||||||.++|.+++++|+++|+++ |++||+||+|.++.+++....++..++...+++++++|
T Consensus 160 ---~~--~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 233 (400)
T 3asa_A 160 ---ED--THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEH-EILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINS 233 (400)
T ss_dssp ---TT--CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEE
T ss_pred ---hc--cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHc-CCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEec
Confidence 21 5789999999999999999999999999999999 99999999999987765434456555433468999999
Q ss_pred cCcccccccceeeEEEcCHHH-------HHHHHHHhhhcc-CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH
Q 012124 299 FSKAFAMTGWRLGYIAGPKHF-------VAACNKIQSQFT-SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 370 (470)
Q Consensus 299 ~sK~~~~~G~r~G~~~~~~~~-------~~~l~~~~~~~~-~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 370 (470)
|||.+|++|+|+||+++++++ ++.+........ .+++.+.|.++.++|+.+ +++++++.++++++.+
T Consensus 234 ~sK~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----~~~~~~~~~~~~~~~l 308 (400)
T 3asa_A 234 FSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL-----PQLEAIHYYRENSDLL 308 (400)
T ss_dssp CCGGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT-----TTCHHHHHHHHHHHHH
T ss_pred chhhcCCcchheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHH
Confidence 999999999999999999888 666654332222 368999999999999863 5677888999999999
Q ss_pred HHHhccCCCCeecCCCceEEEeee-ccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCH
Q 012124 371 VKSFGELEGVKMSEPQGAFYLFID-FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASL 447 (470)
Q Consensus 371 ~~~L~~~~g~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~ 447 (470)
.+.|+++ |+++..+.+|+|+|++ ++... +..++++.|++++||.+.||..|+. ++++||++..++
T Consensus 309 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~~~ 376 (400)
T 3asa_A 309 RKALLAT-GFEVFGGEHAPYLWVKPTQANI-----------SDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKR 376 (400)
T ss_dssp HHHHHHT-TCEEEECSSSSEEEEECCCTTC-----------CTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCSCH
T ss_pred HHHHHHC-CCeeeCCCCceEEEEeccCCCC-----------CHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeCCH
Confidence 9999988 8888877788889999 87532 4557888888777999999998863 578999977799
Q ss_pred HHHHHHHHHHHHHHHhh
Q 012124 448 TTLQAAVERIKKGLLTL 464 (470)
Q Consensus 448 ~~i~~~l~~l~~~l~~~ 464 (470)
+++++++++|++++++.
T Consensus 377 e~i~~~l~~l~~~~~~~ 393 (400)
T 3asa_A 377 EDILAACERLQMAPALQ 393 (400)
T ss_dssp HHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999988754
No 48
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=100.00 E-value=1.3e-47 Score=381.55 Aligned_cols=367 Identities=21% Similarity=0.374 Sum_probs=309.3
Q ss_pred cccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCC--ChHHHHHHHHHHHHcC---CCCCCCCcCcHHHHHHHHH
Q 012124 68 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFD--TPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICH 142 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~--~~~~~~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia~ 142 (470)
+.+.....++....+... ..++++|+|+.|.|+.. +++.+.+++.+++... ...|++..|..+||+++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~ 85 (397)
T 2zyj_A 11 GKGAGRIQASTIRELLKL-----TQRPGILSFAGGLPAPELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAE 85 (397)
T ss_dssp CGGGGGCCCCHHHHHHHH-----HTSTTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHH
T ss_pred hhhhcccCchHHHHHHhh-----ccCCCceecCCCCCCchhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHH
Confidence 444445555544433322 13557899999987654 5788999988887642 4678888899999999999
Q ss_pred HHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhh
Q 012124 143 KLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLES 222 (470)
Q Consensus 143 ~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 222 (470)
++ | +++++|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.+|.+.+ ++|++.|++
T Consensus 86 ~~----g--~~~~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~---~~d~~~l~~ 156 (397)
T 2zyj_A 86 WI----G--VRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEE---GPDLDALEE 156 (397)
T ss_dssp HH----T--SCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT---EECHHHHHH
T ss_pred Hh----C--CChhhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCC---CCCHHHHHH
Confidence 98 4 57789999999999999999999999999999999999999999999999999998643 389999999
Q ss_pred hccC-CceEEE-EcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCC---CceEEEe
Q 012124 223 KLTE-KSRLLI-LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW---ERTLTVN 297 (470)
Q Consensus 223 ~l~~-~~~~i~-l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~---~~~i~i~ 297 (470)
++++ ++++|+ +++||||||.+++.+++++|+++|++| |++||+||+|.++.+++....++..++. . +++++++
T Consensus 157 ~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~-~~~~~~~i~~~ 234 (397)
T 2zyj_A 157 VLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMER-GLVVVEDDAYRELYFGEARLPSLFELAR-EAGYPGVIYLG 234 (397)
T ss_dssp HHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHH-TCCEEEECTTTTCBCSSCCCCCHHHHHH-HHTCCCEEEEE
T ss_pred HHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHc-CCEEEEeCCcccccCCCCCCCchhhhCc-ccCCCeEEEEe
Confidence 9975 788875 699999999999999999999999999 9999999999999887654455555543 3 6889999
Q ss_pred ccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-
Q 012124 298 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE- 376 (470)
Q Consensus 298 S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~- 376 (470)
||||.++ +|+|+||+++++++++.+........++++.+.|.++.++|+.+. .++++++++.++++++.+.+.|++
T Consensus 235 s~sK~~~-~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~ 311 (397)
T 2zyj_A 235 SFSKVLS-PGLRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGF--SERLERVRRVYREKAQAMLHALDRE 311 (397)
T ss_dssp ESTTTTC-GGGCCEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccc-ccceeEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999887777777789999999999998631 167889999999999999999987
Q ss_pred CC-CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC----CCCcEEEEeec-CHHHH
Q 012124 377 LE-GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG----DDTCIRISYAA-SLTTL 450 (470)
Q Consensus 377 ~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~----~~~~iRls~~~-~~~~i 450 (470)
+| |+.+..|.+|+|+|++++... +..++++.|.++ ||.+.||..|+ .++++|++++. +++++
T Consensus 312 ~~~g~~~~~~~~g~~~~~~~~~~~-----------~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i 379 (397)
T 2zyj_A 312 VPKEVRYTRPKGGMFVWMELPKGL-----------SAEGLFRRALEE-NVAFVPGGPFFANGGGENTLRLSYATLDREGI 379 (397)
T ss_dssp SCTTSEECCCSBSSEEEEECSTTC-----------CHHHHHHHHHHT-TEEEEESGGGCTTSCCTTEEEEECSSSCHHHH
T ss_pred CCCCeEEccCCccEEEEEEcCCCC-----------CHHHHHHHHHHC-CCEEechHHhcCCCCCCCeEEEEcCCCCHHHH
Confidence 67 688877888999999997542 678899998877 99999999885 35799999998 79999
Q ss_pred HHHHHHHHHHHHhhC
Q 012124 451 QAAVERIKKGLLTLR 465 (470)
Q Consensus 451 ~~~l~~l~~~l~~~~ 465 (470)
++++++|+++++++.
T Consensus 380 ~~~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 380 AEGVRRLGRALKGLL 394 (397)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987653
No 49
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=100.00 E-value=3.5e-48 Score=388.62 Aligned_cols=370 Identities=16% Similarity=0.176 Sum_probs=301.8
Q ss_pred cCccccccccCCchHHHHHHHHHHHHhcCCCeEEccCC---CCCCCCh--HHHHHHHHHHHHc-CCCCCCCCcCcHHHHH
Q 012124 65 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAG---EPDFDTP--VLIAEAGINAIRE-GFTRYTPNAGTLELRS 138 (470)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g---~~~~~~~--~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~ 138 (470)
+.+++++...+++++..+....... ..+++|+|+.| +|+..+| +.+++++.+++.. ....|++..|.++||+
T Consensus 22 ~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~ 99 (420)
T 4f4e_A 22 MSLFSAVELAPRDPILGLNEAFNAD--TRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDA 99 (420)
T ss_dssp CCTTTTCCCCCCCHHHHHHHHHHHC--CCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHH
T ss_pred cCHhhcCCcCCCChHHHHHHHHHhc--CCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHH
Confidence 4466778888888877776555432 34578999999 6776664 8999999999887 4578999999999999
Q ss_pred HHHHHHHHHcCCCCCCC--cEEEecChHHHHHHHH--HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCc
Q 012124 139 AICHKLKEENGLSYTPD--QILVSNGAKQSILQAV--LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 214 (470)
Q Consensus 139 ~ia~~l~~~~g~~~~~~--~i~it~g~~~al~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 214 (470)
++++++....+..++++ +|++|+|+++++.+++ ..++++||+|++++|+|+++...++..|++++.+|+..++++.
T Consensus 100 ~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 179 (420)
T 4f4e_A 100 SVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNG 179 (420)
T ss_dssp HHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTE
T ss_pred HHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCc
Confidence 99999976544444678 8999999999999994 4568999999999999999999999999999999985445678
Q ss_pred cCHHhHhhhcc---CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCC-CcccccccCCCC
Q 012124 215 LDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA-THTSFASLPGMW 290 (470)
Q Consensus 215 ~d~~~l~~~l~---~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~-~~~~~~~~~~~~ 290 (470)
+|++.|++.++ ++++++++++||||||.+++.+++++|+++|++| |++||+||+|.++.+++. ...++..+....
T Consensus 180 ~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~ 258 (420)
T 4f4e_A 180 VNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKAR-RLVPFLDIAYQGFGESIEADAAAVRLFAAAN 258 (420)
T ss_dssp ECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTSSSCTTGGGHHHHHHHHTT
T ss_pred cCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CcEEEEccccccccCCcchhhHHHHHHHhcC
Confidence 99999999997 5778889999999999999999999999999999 999999999999988742 234444443346
Q ss_pred CceEEEeccCcccccccceeeEEEc---CHHHHHH----HHHHhhhccCCCChHHHHHHHHHHhcCCC---ChHHHHHHH
Q 012124 291 ERTLTVNGFSKAFAMTGWRLGYIAG---PKHFVAA----CNKIQSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMV 360 (470)
Q Consensus 291 ~~~i~i~S~sK~~~~~G~r~G~~~~---~~~~~~~----l~~~~~~~~~~~~~~~q~a~~~~l~~~~~---~~~~~~~~~ 360 (470)
+++++++||||.+|++|+|+||+++ ++++++. +.........+++.+.|.++..++..+.+ .++++++++
T Consensus 259 ~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 338 (420)
T 4f4e_A 259 LNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMR 338 (420)
T ss_dssp CCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 8899999999999999999999863 4565544 33333345566889999999998886421 046688999
Q ss_pred HHHHHHHHHHHHHhccC---CCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCC
Q 012124 361 KAFRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT 437 (470)
Q Consensus 361 ~~~~~~~~~l~~~L~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~ 437 (470)
++|+++++.+.+.|+++ +|+.+..|.+|+|+|+.++ ...+. .+++++||.+.|+.
T Consensus 339 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~---------------~~~~~-~~l~~~gI~v~~~~------ 396 (420)
T 4f4e_A 339 DRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLT---------------SAQVD-RLREEFGIYAVSTG------ 396 (420)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSSEEECCCC---------------HHHHH-HHHHHHCEECCTTS------
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceeECCCccEEEEeCCC---------------HHHHH-HHHHhCCEEecCCC------
Confidence 99999999999999986 4788888899999998763 33444 45556699999852
Q ss_pred cEEEEeec-CHHHHHHHHHHHHHHH
Q 012124 438 CIRISYAA-SLTTLQAAVERIKKGL 461 (470)
Q Consensus 438 ~iRls~~~-~~~~i~~~l~~l~~~l 461 (470)
|++++. +++++++++++|++++
T Consensus 397 --Ris~~~~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 397 --RICVAALNTRNLDVVANAIAAVL 419 (420)
T ss_dssp --EEEGGGCCTTTHHHHHHHHHHHH
T ss_pred --eEEEecCCHHHHHHHHHHHHHHh
Confidence 999997 8888999999999876
No 50
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=100.00 E-value=1.8e-47 Score=384.38 Aligned_cols=361 Identities=20% Similarity=0.352 Sum_probs=297.4
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHH-----------cCCCCCCCCcCcHHHHHHHHHHHHHHcCCC--CCCCcEEEec
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIR-----------EGFTRYTPNAGTLELRSAICHKLKEENGLS--YTPDQILVSN 161 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~-----------~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~--~~~~~i~it~ 161 (470)
.+|+|+.+.+.+.+ +.+.+++.+... .....|+++.|..+||+++++++.+.+|.. +++++|++|+
T Consensus 37 ~~i~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~ 115 (428)
T 1iay_A 37 GVIQMGLAENQLCL-DLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAG 115 (428)
T ss_dssp SBEECSSCCCCSSH-HHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEE
T ss_pred ceeeeccccchhhH-HHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEcc
Confidence 67999998876654 477777764321 123579888899999999999999888865 7789999999
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH-HHcCCEEEEecCcCCCCCccCHHhHhhhccC------CceEEEEc
Q 012124 162 GAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA-RIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILC 234 (470)
Q Consensus 162 g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~-~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~ 234 (470)
|+++++.+++++++++||+|++++|+|+++...+ ...|++++.+|.+.+++|.+|++.|++++++ ++++|+++
T Consensus 116 G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~ 195 (428)
T 1iay_A 116 GATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILT 195 (428)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred ChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEc
Confidence 9999999999999999999999999999998755 4689999999997656678999999998853 68999999
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC-------CCceEEEeccCccccccc
Q 012124 235 SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-------WERTLTVNGFSKAFAMTG 307 (470)
Q Consensus 235 ~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~-------~~~~i~i~S~sK~~~~~G 307 (470)
+||||||.++|.+++++|+++|+++ |++||+||+|.++.|++....++..+... .++++++.||||.+|++|
T Consensus 196 ~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~G 274 (428)
T 1iay_A 196 NPSNPLGTTLDKDTLKSVLSFTNQH-NIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG 274 (428)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHTT-TCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGG
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHC-CeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCC
Confidence 9999999999999999999999999 99999999999988865444455444332 478999999999999999
Q ss_pred ceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC
Q 012124 308 WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 386 (470)
Q Consensus 308 ~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 386 (470)
+|+||+++ ++++++.+.+.... ++.+.+.|.++..+++...+.++++++.++.++++++.+.+.|+++ |+.+..+.
T Consensus 275 lr~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 351 (428)
T 1iay_A 275 FRVGIIYSFNDDVVNCARKMSSF--GLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKNN 351 (428)
T ss_dssp GCEEEEEESCHHHHHHHHHHHTT--SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCS
T ss_pred ceEEEEEeCCHHHHHHHHHHHhc--ccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCC
Confidence 99999998 68888888765543 4689999999999998632113478889999999999999999988 88887777
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEee-cCHHHHHHHHHHHHHHHHh
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYA-ASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~-~~~~~i~~~l~~l~~~l~~ 463 (470)
+|+|+|+++++.... . ...+..++++.|++++||.+.||..|+. ++++|++++ .+++++++++++|++++++
T Consensus 352 ~g~~~~~~~~~~~~~-~----~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 352 AGLFCWMDLRPLLRE-S----TFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp SSSEEEEECGGGCSS-S----SHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred eeEEEEEechhhcCC-C----chhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 899999999753100 0 0002457888888777999999988864 579999999 4999999999999999876
Q ss_pred hC
Q 012124 464 LR 465 (470)
Q Consensus 464 ~~ 465 (470)
.+
T Consensus 427 ~~ 428 (428)
T 1iay_A 427 EK 428 (428)
T ss_dssp TC
T ss_pred cC
Confidence 43
No 51
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=100.00 E-value=9.2e-47 Score=371.17 Aligned_cols=334 Identities=22% Similarity=0.290 Sum_probs=291.1
Q ss_pred CCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHH
Q 012124 93 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 172 (470)
Q Consensus 93 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~ 172 (470)
.+++|+|+.|++++++++.+++++.+.+. ....|++..+ .+||+++++++ | +++++|++|+|+++++.+++.
T Consensus 29 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~-~~~~y~~~~~-~~lr~~la~~~----~--~~~~~v~~~~g~~~a~~~~~~ 100 (365)
T 3get_A 29 VKEVIKLASNENPFGTPPKAIECLRQNAN-KAHLYPDDSM-IELKSTLAQKY----K--VQNENIIIGAGSDQVIEFAIH 100 (365)
T ss_dssp CSCCEECSSCCCTTCSCHHHHHHHHHHGG-GTTSCCCTTC-HHHHHHHHHHH----T--CCGGGEEEESSHHHHHHHHHH
T ss_pred CCceEEecCCCCCCCCCHHHHHHHHHHHH-hhccCCCCCh-HHHHHHHHHHh----C--CCcceEEECCCHHHHHHHHHH
Confidence 36789999999999899999999999876 4677866666 89999999987 3 577899999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHH
Q 012124 173 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 252 (470)
Q Consensus 173 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l 252 (470)
+++++||+|++++|+|+++...++..|++++.+++ .++++ +|++.|++++++++++|++++||||||.++|.+++++|
T Consensus 101 ~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~-~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l 178 (365)
T 3get_A 101 SKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQS-ITHNL-DEFKKLYETHKDEIKLIFLCLPNNPLGECLDASEATEF 178 (365)
T ss_dssp HHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSS-SSCCH-HHHHHHHHHTTTTEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred HHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEec-CCCCC-CCHHHHHHHhCCCCCEEEEcCCCCCCCCCcCHHHHHHH
Confidence 99999999999999999999999999999999998 34567 99999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEecccccccc--CCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhc
Q 012124 253 ARIVAKHPRLLVLSDEIYEHIIY--APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 330 (470)
Q Consensus 253 ~~~~~~~~~~~iI~Dd~~~~~~~--~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~ 330 (470)
+++| ++ |++||+||+|.++.| .+....+........+++++++||||.+|++|+|+||+++++++++.+......
T Consensus 179 ~~~~-~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~- 255 (365)
T 3get_A 179 IKGV-NE-DCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAP- 255 (365)
T ss_dssp HHTS-CT-TSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHHHHHSCT-
T ss_pred HHhC-CC-CcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCHHHHHHHHHhcCC-
Confidence 9998 68 999999999999875 433333333322225789999999999999999999999999999999887654
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 410 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (470)
++++.+.|.++..+|+. .+++++.++.++++++.+.+.|+++ |+.+.++.++ |+|++++..
T Consensus 256 -~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~-~~~~~~~~~------------ 316 (365)
T 3get_A 256 -FNVSNLALKAAVAAMDD----DEFTEKTLENNFSQMELYKEFAKKH-NIKIIDSYTN-FITYFFDEK------------ 316 (365)
T ss_dssp -TCSCHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHHHHHHHT-TCEECCCSSS-EEEEECSSS------------
T ss_pred -CCcCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHhC-CCEECCCCCe-EEEEECCCC------------
Confidence 45899999999999985 6889999999999999999999998 8888766555 489999753
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHH
Q 012124 411 NSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGL 461 (470)
Q Consensus 411 ~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l 461 (470)
+..++.+.|.++ ||.+.||..|+ ++++|++++ ++++++++++.|++++
T Consensus 317 ~~~~~~~~l~~~-gi~v~~g~~~~-~~~iRis~~-~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 317 NSTDLSEKLLKK-GIIIRNLKSYG-LNAIRITIG-TSYENEKFFTEFDKIL 364 (365)
T ss_dssp CHHHHHHHHHTT-TEECEECGGGT-CSEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHC-CEEEEECccCC-CCEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 577888888765 99999999998 899999998 7889999999998876
No 52
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=100.00 E-value=1.7e-46 Score=370.63 Aligned_cols=328 Identities=21% Similarity=0.335 Sum_probs=292.5
Q ss_pred HHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH
Q 012124 114 EAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE 193 (470)
Q Consensus 114 ~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~ 193 (470)
+++.+.+......|++..|..+||+++++++. .+++++|++|+|+++++.+++.+++++||+|++++|+|+++..
T Consensus 46 ~~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~-----~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~ 120 (375)
T 3op7_A 46 EDFYKKLQGTKLNYGWIEGSPAFKKSVSQLYT-----GVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYD 120 (375)
T ss_dssp HHHHHHHHTSCCSSCCTTCCHHHHHHHHTTSS-----SCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHH
T ss_pred HHHHHHHhcCCcCCCCCCChHHHHHHHHHHhc-----cCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHH
Confidence 36666777778899999999999999999863 2578899999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEecccccc
Q 012124 194 MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 273 (470)
Q Consensus 194 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~ 273 (470)
.++..|++++.++++.++++.+|++.|++++++++++|++++||||||.++|.+++++|+++|++| |++||+||+|+++
T Consensus 121 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~-~~~li~De~~~~~ 199 (375)
T 3op7_A 121 IPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEV-GAYILSDEVYRSF 199 (375)
T ss_dssp HHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTT-TCEEEEECCSCCC
T ss_pred HHHHcCCEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEEcccccc
Confidence 999999999999998777788999999999999999999999999999999999999999999999 9999999999998
Q ss_pred ccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCCh
Q 012124 274 IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG 353 (470)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~ 353 (470)
.++ ..+++... .+++++++||||.+|++|+|+||+++++++++.+........++++++.|.++..+++. .+
T Consensus 200 ~~~--~~~~~~~~---~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~ 271 (375)
T 3op7_A 200 SEL--DVPSIIEV---YDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAH---YQ 271 (375)
T ss_dssp SSS--CCCCHHHH---CTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHT---HH
T ss_pred ccc--CCCchhhh---cCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhc---cH
Confidence 765 22333332 46789999999999989999999999999999999888888888899999999998885 36
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC
Q 012124 354 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 433 (470)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f 433 (470)
+++++.++.++++++.+.+.|++.+++.+..+.+++++|+.++... +..+++++|++++||.+.||..|
T Consensus 272 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ll~~~gi~v~~g~~~ 340 (375)
T 3op7_A 272 EILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDM-----------PMEDFCLQLLQEHGVLLVPGNRF 340 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSS-----------CHHHHHHHHHHHHCEECEEGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCC-----------CHHHHHHHHHHhCCEEEeChhhh
Confidence 7889999999999999999999888898888899988898887542 67889888876679999999999
Q ss_pred CCCCcEEEEeecCHHHHHHHHHHHHHHHHhhCC
Q 012124 434 GDDTCIRISYAASLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 434 ~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~~ 466 (470)
+.++++|++++.+.+++++++++|++++++++.
T Consensus 341 ~~~~~iRi~~~~~~~~i~~~l~~l~~~l~~~~~ 373 (375)
T 3op7_A 341 ERDGYVRLGFACEQETLIKGLEKLSQFLRRFDK 373 (375)
T ss_dssp TCTTEEEECCCSCHHHHHHHHHHHHHHHGGGC-
T ss_pred CCCCeEEEEecCCHHHHHHHHHHHHHHHHHHhh
Confidence 888999999999889999999999999988754
No 53
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=100.00 E-value=1e-46 Score=379.65 Aligned_cols=361 Identities=20% Similarity=0.338 Sum_probs=301.3
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCC------------CCCCCCcCcHHHHHHHHHHHHHHcC--CCCCCCcEEEe
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGF------------TRYTPNAGTLELRSAICHKLKEENG--LSYTPDQILVS 160 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~------------~~y~~~~g~~~lr~~ia~~l~~~~g--~~~~~~~i~it 160 (470)
.+|+|+.+...+. ++.+.+++.+...... ..|++..|..+||+++++++.+.++ +++++++|++|
T Consensus 39 ~~i~lg~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~ 117 (435)
T 3piu_A 39 GIIQMGLAENQLC-FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLT 117 (435)
T ss_dssp SBEECSSCCCCSS-HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEE
T ss_pred CeEEecccccccc-HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEc
Confidence 5788888776654 6677777776543211 4698999999999999999986655 55778999999
Q ss_pred cChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH-HcCCEEEEecCcCCCCCccCHHhHhhhccC------CceEEEE
Q 012124 161 NGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-IADATPVILPTRISENFLLDPKVLESKLTE------KSRLLIL 233 (470)
Q Consensus 161 ~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l 233 (470)
+|+++++..++.+++++||.|++++|+|+++...+. ..|++++.++++.++++.+|++.|++++++ ++++|++
T Consensus 118 ~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i 197 (435)
T 3piu_A 118 AGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLV 197 (435)
T ss_dssp EHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEE
Confidence 999999999999999999999999999999998888 789999999998777788999999999965 7899999
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC---------CCceEEEeccCcccc
Q 012124 234 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM---------WERTLTVNGFSKAFA 304 (470)
Q Consensus 234 ~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~---------~~~~i~i~S~sK~~~ 304 (470)
++||||||.++|.+++++|+++|++| |++||+||+|..+.|++....++..+..+ .+++++++||||.+|
T Consensus 198 ~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g 276 (435)
T 3piu_A 198 TNPSNPLGTTMTRNELYLLLSFVEDK-GIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLG 276 (435)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSC
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccC
Confidence 99999999999999999999999999 99999999999988877655555544332 578999999999999
Q ss_pred cccceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec
Q 012124 305 MTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 383 (470)
Q Consensus 305 ~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 383 (470)
++|+|+||+++ ++++++.+.+.... +..+++.|.++.+++....+.++++++.+++++++++.+.+.|++. |+.+.
T Consensus 277 ~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 353 (435)
T 3piu_A 277 LPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCL 353 (435)
T ss_dssp CGGGCEEEEEESCHHHHHHHHHHGGG--SCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEEC
T ss_pred CCceeEEEEEeCCHHHHHHHHHHhhc--CCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccc
Confidence 99999999999 56777777765543 3578899999999998632213467888999999999999999988 89988
Q ss_pred CCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeec-CHHHHHHHHHHHHHH
Q 012124 384 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAA-SLTTLQAAVERIKKG 460 (470)
Q Consensus 384 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~-~~~~i~~~l~~l~~~ 460 (470)
.+.+|+|+|++++...... ...+..+++++|++++||.+.||..|+. ++++||+++. +++++++++++|+++
T Consensus 354 ~~~~g~~~~~~l~~~~~~~-----~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~e~i~~~l~~l~~~ 428 (435)
T 3piu_A 354 NGNAGLFCWVDMRHLLRSN-----TFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAF 428 (435)
T ss_dssp CCCSSSEEEEECGGGSSSS-----SHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHHHH
T ss_pred CCCeeEEEEEEcccccccC-----CchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 8899999999998642100 0002457888888888999999998864 5799999998 999999999999999
Q ss_pred HHhhC
Q 012124 461 LLTLR 465 (470)
Q Consensus 461 l~~~~ 465 (470)
+++++
T Consensus 429 l~~~~ 433 (435)
T 3piu_A 429 VGEYY 433 (435)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 98765
No 54
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=100.00 E-value=2.4e-47 Score=383.34 Aligned_cols=346 Identities=14% Similarity=0.162 Sum_probs=291.5
Q ss_pred CCeEEccCCCCCCCCh---HHHHHHH--HHHHHc---CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 94 VSVIRLAAGEPDFDTP---VLIAEAG--INAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~---~~~~~a~--~~~~~~---~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
...|+|+.|.|+.... +.+.+++ .+++.. ....|++..|.++||++|++++ + +++++|++|+|+++
T Consensus 33 ~~~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~----~--~~~~~i~~t~G~~~ 106 (427)
T 3ppl_A 33 NLKLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLL----G--VPVEQVLAGDASSL 106 (427)
T ss_dssp CCCEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHH----T--SCGGGEEECSSCHH
T ss_pred CceEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHh----C--CCcceEEEeCCcHH
Confidence 4679999999986542 2466666 554443 2578988899999999999998 2 68899999999999
Q ss_pred HH--HHHHHHhcC--C----------CCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc-CCceE
Q 012124 166 SI--LQAVLAVCS--P----------GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT-EKSRL 230 (470)
Q Consensus 166 al--~~~~~~l~~--~----------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~ 230 (470)
++ ++++.++++ | ||+|++++|+|+++...++..|++++.+|++.+ ++|++.|+++++ +++++
T Consensus 107 al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~~~~~~ 183 (427)
T 3ppl_A 107 NIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPMNED---GPDMDAVEELVKNPQVKG 183 (427)
T ss_dssp HHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEEEEETT---EECHHHHHHHTTSTTEEE
T ss_pred HHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEeCCCCC---CCCHHHHHHHHhcCCCeE
Confidence 99 588888877 6 999999999999999999999999999999753 399999999994 68888
Q ss_pred EEE-cCCCCCcccCCCHHHHHHHHHHH-HhCCCEEEEEeccccccccCCCCcc--ccccc---CCCCCceEEEeccCccc
Q 012124 231 LIL-CSPSNPTGSVYPKNLLDEIARIV-AKHPRLLVLSDEIYEHIIYAPATHT--SFASL---PGMWERTLTVNGFSKAF 303 (470)
Q Consensus 231 i~l-~~p~nPtG~~~s~~~~~~l~~~~-~~~~~~~iI~Dd~~~~~~~~~~~~~--~~~~~---~~~~~~~i~i~S~sK~~ 303 (470)
|++ ++||||||.++|.+++++|+++| ++| |++||+||+|.++.|++.... ++..+ .+..+++++++||||..
T Consensus 184 v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 262 (427)
T 3ppl_A 184 MWVVPVFSNPTGFTVTEDVAKRLSAMETAAP-DFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKIT 262 (427)
T ss_dssp EEECCSSCTTTCCCCCHHHHHHHHHCCCSST-TCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTS
T ss_pred EEECCCCCCCCCccCCHHHHHHHHHHHhhcC-CCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhcc
Confidence 875 58899999999999999999999 999 999999999999888764322 34433 12358999999999995
Q ss_pred ccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHHHHHhcc----CC
Q 012124 304 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL-GYAGGEVVSKMVKAFRERRDFLVKSFGE----LE 378 (470)
Q Consensus 304 ~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~ 378 (470)
++|+|+||+++++++++.+........++++.+.|.++..++.. +.+ .+++++.++.|+++++.+.+.|.+ ++
T Consensus 263 -~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~ 340 (427)
T 3ppl_A 263 -LAGAGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGV-RAVMRKHAASLAPKFNKVLEILDSRLAEYG 340 (427)
T ss_dssp -CTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred -CcCccEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 69999999999999999999988888889999999999999986 333 678899999999999999888865 33
Q ss_pred CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC-CCCCC-----CCCcEEEEeec-CHHHHH
Q 012124 379 GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP-GDAFG-----DDTCIRISYAA-SLTTLQ 451 (470)
Q Consensus 379 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~p-g~~f~-----~~~~iRls~~~-~~~~i~ 451 (470)
++.+..|.+|+|+|+++++. +..++.+.|.+ +||.+.| |..|. .++++||+++. ++++++
T Consensus 341 ~~~~~~p~~g~~~~~~~~~~------------~~~~~~~~l~~-~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~~i~ 407 (427)
T 3ppl_A 341 VAQWTVPAGGYFISLDVVPG------------TASRVAELAKE-AGIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELE 407 (427)
T ss_dssp CCEECCCSBSSCEEEECSTT------------CHHHHHHHHHH-TTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHH
T ss_pred ceEEeCCCccEEEEEECCcc------------hHHHHHHHHHH-CCCEEecCcCcCCCCCCCCCCeEEEECCCCCHHHHH
Confidence 57888899999999999864 57788877654 5999999 55554 35799999998 899999
Q ss_pred HHHHHHHHHHHhh
Q 012124 452 AAVERIKKGLLTL 464 (470)
Q Consensus 452 ~~l~~l~~~l~~~ 464 (470)
+++++|+++++++
T Consensus 408 ~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 408 VAMDGVATCVLLA 420 (427)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998765
No 55
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=100.00 E-value=1.2e-46 Score=377.10 Aligned_cols=352 Identities=19% Similarity=0.311 Sum_probs=287.1
Q ss_pred CCCeEEccCCCCCCCCh--HHHHHHHHHHHHcC-----CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 93 GVSVIRLAAGEPDFDTP--VLIAEAGINAIREG-----FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 93 ~~~~i~l~~g~~~~~~~--~~~~~a~~~~~~~~-----~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
++++|+|+.|.|+..++ +.+.+++.+.+.+. ...|+++.|.++||+++++++.+.+|+.+++++|++|+|+++
T Consensus 30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~ 109 (417)
T 3g7q_A 30 TPGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQS 109 (417)
T ss_dssp --CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHH
T ss_pred CCCceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHH
Confidence 35789999999987553 56778888776543 247999999999999999999998999999999999999999
Q ss_pred HHHHHHHHhcCCCC-----eEEEc-CCCCCChHHHHHH------cCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEE
Q 012124 166 SILQAVLAVCSPGD-----EVIIP-APFWVSYPEMARI------ADATPVILPTRISENFLLDPKVLESKLTEKSRLLIL 233 (470)
Q Consensus 166 al~~~~~~l~~~gd-----~Vlv~-~p~y~~~~~~~~~------~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l 233 (470)
++++++++++++|| +|+++ +|+|+++...+.. .+..+..++.+. .++.+|++.|+ ++++++++++
T Consensus 110 al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~l~--~~~~~~~v~~ 186 (417)
T 3g7q_A 110 AFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQ-FKYHVDFEHLH--IGEETGMICV 186 (417)
T ss_dssp HHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGE-EEEECCGGGCC--CCTTEEEEEE
T ss_pred HHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcc-cccccCHHHhc--cccCceEEEE
Confidence 99999999999987 89996 9999988766532 344555555421 24668999998 7778999999
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEE
Q 012124 234 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYI 313 (470)
Q Consensus 234 ~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~ 313 (470)
++||||||.++|.+++++|+++|++| |++||+||+|+.+... ....... ....+++++++|||| ++++|+|+||+
T Consensus 187 ~~p~NptG~~~~~~~~~~l~~~a~~~-~~~li~De~~~~~~~~-~~~~~~~--~~~~~~~i~~~s~sK-~~~~G~r~G~~ 261 (417)
T 3g7q_A 187 SRPTNPTGNVITDEELMKLDRLANQH-NIPLVIDNAYGVPFPG-IIFSEAR--PLWNPNIILCMSLSK-LGLPGSRCGII 261 (417)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHT-TCCEEEECTTCTTTTC-CBCSCCC--CCCCTTEEEEEESGG-GTCTTSCCEEE
T ss_pred CCCCCCCCCccCHHHHHHHHHHHHHc-CCEEEEeCCCcccccc-ccccccc--cCCCCCEEEEEechh-ccCCCcceEEE
Confidence 99999999999999999999999999 9999999999863211 1011111 112578999999999 56799999999
Q ss_pred EcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHH-HHHHHHHHHHHHHHHhcc-CC--CCeecCCCceE
Q 012124 314 AGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK-MVKAFRERRDFLVKSFGE-LE--GVKMSEPQGAF 389 (470)
Q Consensus 314 ~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~-~~--g~~~~~~~~g~ 389 (470)
++++++++.+........++++++.|.++..+++.+.+ .++.++ +++.|+++++.+.+.|.+ ++ ++.+..|.+|+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ 340 (417)
T 3g7q_A 262 IANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDL-LRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAI 340 (417)
T ss_dssp ECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCH-HHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSS
T ss_pred EeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcch-HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcce
Confidence 99999999999988888888999999999999998654 555555 788899999999998876 55 47888889999
Q ss_pred EEeeeccC-ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---------CCcEEEEeecCHHHHHHHHHHHHH
Q 012124 390 YLFIDFST-YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---------DTCIRISYAASLTTLQAAVERIKK 459 (470)
Q Consensus 390 ~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---------~~~iRls~~~~~~~i~~~l~~l~~ 459 (470)
|+|++++. .. +..++++.|.+ +||.+.||..|+. ++++||+++.+++++++++++|++
T Consensus 341 ~~~~~~~~~~~-----------~~~~l~~~l~~-~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~ 408 (417)
T 3g7q_A 341 FLWLWFKDLPI-----------TTELLYQRLKA-RGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPDKIEAGVKILAE 408 (417)
T ss_dssp EEEEECTTCSS-----------CHHHHHHHHHH-TTEECEEGGGGCTTBSSCCGGGGGEEEEESCSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCC-----------CHHHHHHHHHH-CCEEEECchhhCCCCccccccCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 99999986 22 67889888855 5999999998864 468999999999999999999999
Q ss_pred HHHhhC
Q 012124 460 GLLTLR 465 (470)
Q Consensus 460 ~l~~~~ 465 (470)
+++++.
T Consensus 409 ~l~~~~ 414 (417)
T 3g7q_A 409 EIERAW 414 (417)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 56
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=100.00 E-value=4.8e-47 Score=378.04 Aligned_cols=351 Identities=16% Similarity=0.126 Sum_probs=284.5
Q ss_pred HHHHHhcC-CCeEEccCCCC-CCCC----hHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEE
Q 012124 86 ATALAQAG-VSVIRLAAGEP-DFDT----PVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL 158 (470)
Q Consensus 86 ~~~~~~~~-~~~i~l~~g~~-~~~~----~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~ 158 (470)
.......+ +++|+|+.|.| +... .+.+.+++.+.... ...+|.+..|.++||+++++++.+.+|..+++++|+
T Consensus 19 ~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~ 98 (401)
T 7aat_A 19 TEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYV 98 (401)
T ss_dssp HHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEE
T ss_pred HHHHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceE
Confidence 33333333 35899999997 6543 24688888877663 678898889999999999999988778777799998
Q ss_pred E--ecChHHHHHHHHHHhc---CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc---CCceE
Q 012124 159 V--SNGAKQSILQAVLAVC---SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT---EKSRL 230 (470)
Q Consensus 159 i--t~g~~~al~~~~~~l~---~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~ 230 (470)
+ |+|+++++.+++..+. +|||+|++++|+|+++...++..|++++.+|++.++++++|++.+++.++ +++++
T Consensus 99 ~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 178 (401)
T 7aat_A 99 TVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSII 178 (401)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEE
T ss_pred EEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEE
Confidence 7 9999999998887664 89999999999999999999999999999999765667899996666553 57888
Q ss_pred EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCC--CcccccccCCCCCceEEEeccCcccccccc
Q 012124 231 LILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA--THTSFASLPGMWERTLTVNGFSKAFAMTGW 308 (470)
Q Consensus 231 i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~--~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~ 308 (470)
+++++||||||.+++.+++++|+++|++| |++||+||+|.++.+++. ...++..+....+++|+++||||.+|++|+
T Consensus 179 v~i~~p~NPtG~~~~~~~l~~i~~~~~~~-~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~ 257 (401)
T 7aat_A 179 LLHACAHNPTGVDPRQEQWKELASVVKKR-NLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGE 257 (401)
T ss_dssp EEESSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGG
T ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccccC
Confidence 99999999999999999999999999999 999999999999887642 122333332235789999999999999999
Q ss_pred eeeEEEc---CHH----HHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHHHHHHHHHhccC-
Q 012124 309 RLGYIAG---PKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYAG---GEVVSKMVKAFRERRDFLVKSFGEL- 377 (470)
Q Consensus 309 r~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~- 377 (470)
|+||+++ +++ +...+.........+++.+.|.++..++.++.+. .+++++++++++++++.+.+.|+++
T Consensus 258 RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 337 (401)
T 7aat_A 258 RAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEG 337 (401)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999886 555 5566666666677788889999988888763210 4568888999999999999999886
Q ss_pred --CCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec-CHHHHHHHH
Q 012124 378 --EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAV 454 (470)
Q Consensus 378 --~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~-~~~~i~~~l 454 (470)
+++.+..|.+|+|+|+.++ . +++..|++++||.+.|+ +|++++. ++++|++++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~ll~~~gi~v~~~--------~Ris~~~~~~~~i~~~~ 393 (401)
T 7aat_A 338 SSHNWQHITDQIGMFCFTGLK---------------P-EQVERLTKEFSIYMTKD--------GRISVAGVASSNVGYLA 393 (401)
T ss_dssp CCSCCHHHHHCCSSEEECCCC---------------H-HHHHHHHHHHCEECCTT--------CEEEGGGCCTTTHHHHH
T ss_pred CCCCCceecCCcceEEecCCC---------------H-HHHHHHHHhCCEeccCC--------CeEEeccCChhhHHHHH
Confidence 2477778899999997653 3 33466767779999875 6999987 667799999
Q ss_pred HHHHHHH
Q 012124 455 ERIKKGL 461 (470)
Q Consensus 455 ~~l~~~l 461 (470)
++|++++
T Consensus 394 ~~l~~~~ 400 (401)
T 7aat_A 394 HAIHQVT 400 (401)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999876
No 57
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=3.7e-46 Score=376.69 Aligned_cols=371 Identities=16% Similarity=0.236 Sum_probs=300.7
Q ss_pred chHHHHHHHHHHHHhcCCCeE-EccCCCCCCCCh--HHHHHHHHHHHHc-------C-----CCCCCCCcCcHHHHHHHH
Q 012124 77 SKTVAITDQATALAQAGVSVI-RLAAGEPDFDTP--VLIAEAGINAIRE-------G-----FTRYTPNAGTLELRSAIC 141 (470)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~i-~l~~g~~~~~~~--~~~~~a~~~~~~~-------~-----~~~y~~~~g~~~lr~~ia 141 (470)
..+........+... .+++| +|+.|.|+..++ +.+.+++.+.+.+ . ...|++..|.++||++++
T Consensus 15 ~~~~~~~~~~~~~~~-~~~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia 93 (444)
T 3if2_A 15 TGISQLMDDLGDALK-SDQPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALV 93 (444)
T ss_dssp CHHHHHHHHHHHHHH-SSSCCEECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHH
T ss_pred hhHHHHHHHHHhhhc-CchhhhccCCCCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHH
Confidence 444444443333322 36789 999999997543 5677777777655 3 257999999999999999
Q ss_pred HHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCC--------------eEEEc-CCCCCChHH------HHHHcCC
Q 012124 142 HKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGD--------------EVIIP-APFWVSYPE------MARIADA 200 (470)
Q Consensus 142 ~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd--------------~Vlv~-~p~y~~~~~------~~~~~g~ 200 (470)
+++.+.+|+.+++++|++|+|+++++.+++++++++|| +|++. +|+|+.+.. .+...|.
T Consensus 94 ~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~ 173 (444)
T 3if2_A 94 GFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLP 173 (444)
T ss_dssp HHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCC
T ss_pred HHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCc
Confidence 99999999999999999999999999999999999998 78775 999999876 3456788
Q ss_pred EEEEecCcCCC---CCccCHHhHhhh---ccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccc
Q 012124 201 TPVILPTRISE---NFLLDPKVLESK---LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII 274 (470)
Q Consensus 201 ~~~~v~~~~~~---~~~~d~~~l~~~---l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~ 274 (470)
.++.++++.++ ++.+|++.|+++ +++++++|++++||||||.++|.+++++|+++|++| |++||+||+|+.+.
T Consensus 174 ~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~-~~~li~De~~~~~~ 252 (444)
T 3if2_A 174 HIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRY-DIPLIIDNAYGMPF 252 (444)
T ss_dssp EEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCCEEEECTTCTTT
T ss_pred eEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHC-CCEEEEECCCCCcc
Confidence 99888886422 357999999998 678899999999999999999999999999999999 99999999998632
Q ss_pred cCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChH
Q 012124 275 YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE 354 (470)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~ 354 (470)
.. ....... ....+++++++||||. +++|+|+||+++++++++.+........++++++.|.++..+++.+.+ .+
T Consensus 253 ~~-~~~~~~~--~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~ 327 (444)
T 3if2_A 253 PN-IIYSDAH--LNWDNNTILCFSLSKI-GLPGMRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRI-KQ 327 (444)
T ss_dssp TC-CBCSCCC--CCCCTTEEEEEESTTT-TCGGGCCEEEECCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHH-HH
T ss_pred cc-ccccccc--ccCCCCEEEEechhhc-cCCCCceEEEEECHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcCch-hH
Confidence 11 0001111 1125789999999997 579999999999999999999888878888999999999999997554 45
Q ss_pred HHHH-HHHHHHHHHHHHHHHhcc-CC--CCeecCCCceEEEeeeccC-ccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC
Q 012124 355 VVSK-MVKAFRERRDFLVKSFGE-LE--GVKMSEPQGAFYLFIDFST-YYGSEAEGFGKIENSESLCRYLLDKAQVALVP 429 (470)
Q Consensus 355 ~~~~-~~~~~~~~~~~l~~~L~~-~~--g~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~p 429 (470)
+.++ +++.|+++++.+.+.|.+ ++ ++.+..|.+|+|+|++++. .. +..++++.|.+ +||.+.|
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-----------~~~~l~~~l~~-~gi~v~~ 395 (444)
T 3if2_A 328 LSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPI-----------STLDLYERLKA-KGTLIVP 395 (444)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSS-----------CHHHHHHHHHH-TTEECEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCC-----------CHHHHHHHHHH-CCeEEec
Confidence 5555 788899999999888876 55 4577778999999999985 22 67889888765 5999999
Q ss_pred CCCCCCC----------CcEEEEeecCHHHHHHHHHHHHHHHHhhCC
Q 012124 430 GDAFGDD----------TCIRISYAASLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 430 g~~f~~~----------~~iRls~~~~~~~i~~~l~~l~~~l~~~~~ 466 (470)
|..|+.. +++||+++.++++|++++++|+++++++..
T Consensus 396 g~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~~~~ 442 (444)
T 3if2_A 396 SEYFFPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVIGEVVRELYD 442 (444)
T ss_dssp GGGSCTTCCCTTCSGGGSEEEEESSSCHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhcCCCCCcccccCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHHc
Confidence 9988532 589999999999999999999999987653
No 58
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=100.00 E-value=5.1e-46 Score=364.28 Aligned_cols=336 Identities=18% Similarity=0.241 Sum_probs=292.0
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 171 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~ 171 (470)
.++++|+|+.|.+++++|+.+++++.+.+.. ...| +..+..+||+++++++ | +++++|++|+|+++++.+++
T Consensus 14 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~y-~~~~~~~l~~~la~~~----~--~~~~~i~~~~g~~~a~~~~~ 85 (354)
T 3ly1_A 14 STDNPIRINFNENPLGMSPKAQAAARDAVVK-ANRY-AKNEILMLGNKLAAHH----Q--VEAPSILLTAGSSEGIRAAI 85 (354)
T ss_dssp CSSSCEECSSCCCSSCCCHHHHHHHHHTGGG-TTSC-CHHHHHHHHHHHHHHT----T--SCGGGEEEESHHHHHHHHHH
T ss_pred CCCceEEccCCCCCCCCCHHHHHHHHHHHhh-CcCC-CCCchHHHHHHHHHHh----C--CChHHEEEeCChHHHHHHHH
Confidence 4567899999999999999999999988764 6678 6678899999999986 3 57789999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc--CCceEEEEcCCCCCcccCCCHHHH
Q 012124 172 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT--EKSRLLILCSPSNPTGSVYPKNLL 249 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~--~~~~~i~l~~p~nPtG~~~s~~~~ 249 (470)
++++++||+|++++|+|+++...++..|++++.++++. ++.+|++.|+++++ +++++|++++||||||.+++.+++
T Consensus 86 ~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l 163 (354)
T 3ly1_A 86 EAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLD--NWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVI 163 (354)
T ss_dssp HHHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECCCT--TSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHH
T ss_pred HHHhCCCCeEEECCCCchHHHHHHHHcCCEEEEecCCC--CCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHH
Confidence 99999999999999999999999999999999999864 46799999999998 789999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhh
Q 012124 250 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ 329 (470)
Q Consensus 250 ~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~ 329 (470)
++|+++| ++ |++||+||+|.++.+++.....+...+...+++++++||||.+|++|+|+||+++++++++.+......
T Consensus 164 ~~l~~~~-~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~ 241 (354)
T 3ly1_A 164 EPWIASK-PA-NTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRYVAG 241 (354)
T ss_dssp HHHHHTC-CT-TEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHHHHGGGTTC
T ss_pred HHHHHhC-CC-CeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCHHHHHHHHHhcCC
Confidence 9999999 89 999999999999887654333333333322889999999999999999999999999999998877655
Q ss_pred ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCC
Q 012124 330 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI 409 (470)
Q Consensus 330 ~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 409 (470)
++++++.|.++.++|+. .+++++.+++++++++.+.+.|+++ |+.+.++ .|.|+|++++.
T Consensus 242 --~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~-~~~~~~~~~~~------------ 301 (354)
T 3ly1_A 242 --EKINFSGVDAALASMND----SAFITYSKKSNDVSRQILLKALEDL-KLPYLPS-EGNFVFHQLVV------------ 301 (354)
T ss_dssp --SCCCHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCC-CSSEEEEECSS------------
T ss_pred --CCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCeECCC-CceEEEEECCC------------
Confidence 57899999999999985 5889999999999999999999988 7877655 45568999874
Q ss_pred CCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 410 ENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 410 ~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
+..++.+.|.++ ||.+. |..++.++++|++++ +++++++++++|++++++
T Consensus 302 -~~~~~~~~l~~~-gi~v~-g~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 302 -PLKDYQTHMADA-GVLIG-RAFPPADNWCRISLG-TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp -CHHHHHHHHHHT-TEECC-CCCTTCTTEEEEECC-CHHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHC-CEEEe-ecCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence 577888888765 99998 776667889999988 788999999999999875
No 59
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=100.00 E-value=1.6e-47 Score=393.74 Aligned_cols=360 Identities=21% Similarity=0.271 Sum_probs=290.3
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHH-cC-CCCC-CCcEEEecChHHHHHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEE-NG-LSYT-PDQILVSNGAKQSILQAV 171 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~-~g-~~~~-~~~i~it~g~~~al~~~~ 171 (470)
++|+|+.|.|+.+ ++.+++++.+.+.. ...|.+..|..++|+++++++... .+ +.+. +++|++|+|+++++.+++
T Consensus 104 ~~i~l~~g~~~~~-~~~~v~a~~~~~~~-~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~ 181 (533)
T 3f6t_A 104 DAVNYCHTELGLN-RDKVVAEWVNGAVA-NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAF 181 (533)
T ss_dssp HHHHHHHHTTCCC-HHHHHHHHHHHHHT-CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHH
T ss_pred hheeccCCCCCcC-CcHHHHHHHHHHHh-CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHH
Confidence 3588999999986 56666666666654 233337889999999999999765 34 5555 479999999999999999
Q ss_pred HH-----hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcC--CCCCccCHHhHhhhccCCceEEEEcCCCCCcccCC
Q 012124 172 LA-----VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI--SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 244 (470)
Q Consensus 172 ~~-----l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~--~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~ 244 (470)
.+ ++++||+|++++|+|+++...++..|++++.++++. ++++.+|++.|++++++++++|++++||||||.++
T Consensus 182 ~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~NPtG~~~ 261 (533)
T 3f6t_A 182 HSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEF 261 (533)
T ss_dssp HHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCTTTCBCC
T ss_pred HHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCCCCCcccc
Confidence 98 789999999999999999999999999999999875 56788999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH-hCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHH-----
Q 012124 245 PKNLLDEIARIVA-KHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH----- 318 (470)
Q Consensus 245 s~~~~~~l~~~~~-~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~----- 318 (470)
|.+++++|+++|+ +| +++||+||+|+++.++. .++.... .+++++++||||.+|++|+|+||++++++
T Consensus 262 ~~~~l~~l~~la~~~~-~~~li~De~y~~~~~~~---~~~~~~~--~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~~ 335 (533)
T 3f6t_A 262 DTNALNAIKQAVEKNP-KLMIISDEVYGAFVPNF---KSIYSVV--PYNTMLVYSYSKLFGCTGWRLGVIALNEKNVFDD 335 (533)
T ss_dssp CHHHHHHHHHHHHHCT-TCEEEEECTTGGGSTTC---CCHHHHS--GGGEEEEEESHHHHTCGGGCEEEEEEESSCHHHH
T ss_pred CHHHHHHHHHHHHhCC-CCEEEEcCCccccccCc---cCHhhcC--CCCEEEEecCcccCCCcccceEEEEECcHHHHHH
Confidence 9999999999999 68 99999999999987642 3444443 47899999999999999999999999876
Q ss_pred HHHHH--------------------------------HHHhhhccCCCChHHHHH----HHHHHhc----CCCChHHHHH
Q 012124 319 FVAAC--------------------------------NKIQSQFTSGASSISQKA----GVAALGL----GYAGGEVVSK 358 (470)
Q Consensus 319 ~~~~l--------------------------------~~~~~~~~~~~~~~~q~a----~~~~l~~----~~~~~~~~~~ 358 (470)
+++.+ .........+++.+.|.+ +..+|.. +.. .+++++
T Consensus 336 li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~-~~~~~~ 414 (533)
T 3f6t_A 336 NIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSD-DPYIDI 414 (533)
T ss_dssp HHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTB-CHHHHH
T ss_pred HHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccch-HHHHHH
Confidence 43322 334445566788889988 4555641 222 689999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccC-----CCCCCCHHHHHHHHHHcCCEEEECCCCC
Q 012124 359 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEG-----FGKIENSESLCRYLLDKAQVALVPGDAF 433 (470)
Q Consensus 359 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~L~~~~gI~v~pg~~f 433 (470)
+++.|+++++.+.+.|. + ++.+..+.+++|+|++++......... ..+..+..+++.+|++++||.+.||..|
T Consensus 415 ~~~~~~~r~~~l~~~L~-~-~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f 492 (533)
T 3f6t_A 415 ARKLVSERYDQLHDAMQ-A-PKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGF 492 (533)
T ss_dssp HHHHHHHHHHHHHHHHT-C-CCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEE
T ss_pred HHHHHHHHHHHHHHhcC-C-CccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCccc
Confidence 99999999999999997 6 688888999999999986410000000 0000156678888887889999999998
Q ss_pred CC-CCcEEEEeec-CHHHHHHHHHHHHHHHHhhC
Q 012124 434 GD-DTCIRISYAA-SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 434 ~~-~~~iRls~~~-~~~~i~~~l~~l~~~l~~~~ 465 (470)
+. ++++|||++. +++++++++++|+++++++.
T Consensus 493 ~~~~~~iRls~a~~~~e~i~~~i~~L~~~l~~~~ 526 (533)
T 3f6t_A 493 GAKPGELRVSQANLPTEDYALIGKQVLELLKEYY 526 (533)
T ss_dssp CSSTTEEEEESSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEeeCCHHHHHHHHHHHHHHHHHHH
Confidence 86 5799999996 99999999999999988753
No 60
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=100.00 E-value=2.5e-50 Score=400.60 Aligned_cols=351 Identities=24% Similarity=0.373 Sum_probs=306.2
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 174 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l 174 (470)
++++|+.|+|++++|+.+.+++.+++......|++. ..++|+++++++.+.+|+++++++|++|+|+++++.++++++
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~ 109 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQLVYGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAF 109 (392)
Confidence 679999999999889999999999887666778654 889999999999988888788899999999999999999999
Q ss_pred cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCC-CCCccCHHhHhhhcc-CCceEEEEcCCCCCcccCCCHHHHHHH
Q 012124 175 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS-ENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEI 252 (470)
Q Consensus 175 ~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG~~~s~~~~~~l 252 (470)
+++||+|++++|+|+++...++..|++++.++++.+ ++|.+|++.|++.++ ++++++++++||||||.+++.+++++|
T Consensus 110 ~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~l 189 (392)
T 3b1d_A 110 TKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQI 189 (392)
Confidence 999999999999999999999999999999998533 347789999999997 688999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEeccccccccCCCCcccccccCCC-CCceEEEeccCcccccccceeeEEEcCH-HHHHHHHHHhhhc
Q 012124 253 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACNKIQSQF 330 (470)
Q Consensus 253 ~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~S~sK~~~~~G~r~G~~~~~~-~~~~~l~~~~~~~ 330 (470)
+++|++| |++||+||+|.++.+++....++..++.. .+++++++||||.+|++|+|+||+++++ ++++.+......+
T Consensus 190 ~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~ 268 (392)
T 3b1d_A 190 GHLCQKH-HVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVN 268 (392)
Confidence 9999999 99999999999998876555666666432 5789999999999998999999999975 4888888776665
Q ss_pred cC-CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCCeecCCCceEEEeeeccCc-cCCcccCCC
Q 012124 331 TS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTY-YGSEAEGFG 407 (470)
Q Consensus 331 ~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~ 407 (470)
++ +++++.|.++.++|+. ..++++++++.++++++.+.+.|++ ++++.+..+.++|++|++++.. .
T Consensus 269 ~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~-------- 337 (392)
T 3b1d_A 269 NHHEVSSLGYIATETAYRY---GKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQGTYLIWLDFSDYGL-------- 337 (392)
Confidence 43 5688999999888875 2578899999999999999999988 7889888899999999998752 1
Q ss_pred CCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 408 KIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 408 ~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
+..++++.|++++||.+.||..|+. ++++||+++.+++++++++++|+++++
T Consensus 338 ---~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 338 ---TDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAAPKSLVEEICKRIVCCLP 391 (392)
Confidence 5667888887566999999998873 579999999988999999999998875
No 61
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=100.00 E-value=3.2e-45 Score=359.93 Aligned_cols=332 Identities=19% Similarity=0.277 Sum_probs=286.3
Q ss_pred CCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHH
Q 012124 93 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 172 (470)
Q Consensus 93 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~ 172 (470)
.+++|+|+.|++++++++.+.+++.+.+. ....| +..+..++|+++++++. +++++|++|+|+++++.++++
T Consensus 31 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~-~~~~y-~~~~~~~lr~~la~~~~------~~~~~v~~~~g~t~a~~~~~~ 102 (363)
T 3ffh_A 31 LTKITKLSSNENPLGTSKKVAAIQANSSV-ETEIY-PDGWASSLRKEVADFYQ------LEEEELIFTAGVDELIELLTR 102 (363)
T ss_dssp CSCCEECSSCSCTTCCCHHHHHHHHTCBS-CCCBC-----CHHHHHHHHHHHT------CCGGGEEEESSHHHHHHHHHH
T ss_pred CCceEEccCCCCCCCCCHHHHHHHHHHHH-HhhcC-CCcchHHHHHHHHHHhC------CChhhEEEeCCHHHHHHHHHH
Confidence 45889999999999889999999888653 35667 66789999999999974 577899999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHH
Q 012124 173 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 252 (470)
Q Consensus 173 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l 252 (470)
+++++||+|++++|+|+++...++..|++++.+++++ ++.+|++.+++++++++++|++++||||||.+++.+++.+|
T Consensus 103 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~~~~l~~l 180 (363)
T 3ffh_A 103 VLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQ--DGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAF 180 (363)
T ss_dssp HHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECCT--TSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred HHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCC--CCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcCHHHHHHH
Confidence 9999999999999999999999999999999999974 46699999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccC
Q 012124 253 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 332 (470)
Q Consensus 253 ~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~ 332 (470)
+++|++ |+++|+||+|+++.+ +.. .+........+++++++||||.+|++|+|+||+++++++++.+..... .+
T Consensus 181 ~~~~~~--~~~li~De~~~~~~~-~~~-~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~--~~ 254 (363)
T 3ffh_A 181 LDRVPS--DVLVVLDEAYIEYVT-PQP-EKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEIIRQLNIVRP--PF 254 (363)
T ss_dssp HTTSCT--TSEEEEECTTGGGCS-SCC-CCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHHTCC--SC
T ss_pred HHhCCC--CcEEEEeCchHhhcC-ccc-cCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHHHHHHHHHhCC--CC
Confidence 988764 799999999999877 432 233333333689999999999999999999999999999999888765 55
Q ss_pred CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCH
Q 012124 333 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 412 (470)
Q Consensus 333 ~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (470)
+++.+.|.++.++|+. .+++++.++.++++++.+.+.|++++|+.+.++. +.|+|++++. +.
T Consensus 255 ~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-~~~~~~~~~~-------------~~ 316 (363)
T 3ffh_A 255 NTTSIGQKLAIEAIKD----QAFIGECRTSNANGIKQYEAFAKRFEKVKLYPAN-GNFVLIDLGI-------------EA 316 (363)
T ss_dssp CCBHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCC-SSEEEEECSS-------------CH
T ss_pred CCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHhhCCCceECCCC-CeEEEEECCC-------------CH
Confidence 7899999999999985 6889999999999999999999986689887655 4558999874 57
Q ss_pred HHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 012124 413 ESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKG 460 (470)
Q Consensus 413 ~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~ 460 (470)
.++.+.|.++ ||.+.||..|+.++++|++++ ++++++++++.|+++
T Consensus 317 ~~~~~~l~~~-gi~v~~g~~~~~~~~iRis~~-~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 317 GTIFSYLEKN-GYITRSGAALGFPTAVRITIG-KEEDNSAVIALLEKL 362 (363)
T ss_dssp HHHHHHHHHT-TEECEETTTTTCTTEEEEECC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CeEEEeCccCCCCCeEEEECC-CHHHHHHHHHHHHHh
Confidence 7888888765 999999999988899999998 888999999999875
No 62
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=100.00 E-value=2.7e-46 Score=375.32 Aligned_cols=345 Identities=15% Similarity=0.201 Sum_probs=290.3
Q ss_pred CeEEccCCCCC---CCChHHHHHHHH--HHHHcC--CCCC-CCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHH
Q 012124 95 SVIRLAAGEPD---FDTPVLIAEAGI--NAIREG--FTRY-TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 95 ~~i~l~~g~~~---~~~~~~~~~a~~--~~~~~~--~~~y-~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
..|+|+.|.|+ ++.|+.+.+++. +.+..+ ...| ++..|.++||+++++++ + +++++|++|+|++++
T Consensus 26 ~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~----~--~~~~~i~~t~G~~~a 99 (423)
T 3ez1_A 26 LNLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYL----D--VKAENVLVWNNSSLE 99 (423)
T ss_dssp CCEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHT----T--SCGGGEEECSSCHHH
T ss_pred ceEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHh----C--CChhhEEEeCCcHHH
Confidence 56999999999 666777888775 444332 4789 88899999999999997 3 578899999999999
Q ss_pred HH--HHHHHhcC--C---------CCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhc--cCCceEE
Q 012124 167 IL--QAVLAVCS--P---------GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL--TEKSRLL 231 (470)
Q Consensus 167 l~--~~~~~l~~--~---------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l--~~~~~~i 231 (470)
+. ++++++++ | ||+|++++|+|+++...++..|++++.+|++.+ ++|+|.|++++ ++++++|
T Consensus 100 l~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~~~~~~~v 176 (423)
T 3ez1_A 100 LQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSD---GPDVDAVERLAGTDPSVKGI 176 (423)
T ss_dssp HHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT---EECHHHHHHHHHSCTTEEEE
T ss_pred HHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCCCC---CCCHHHHHHHHhhCCCceEE
Confidence 97 88888887 8 599999999999999999999999999999753 39999999999 5789988
Q ss_pred EE-cCCCCCcccCCCHHHHHHHHHHH-HhCCCEEEEEeccccccccCC-C--Cccccccc---CCCCCceEEEeccCccc
Q 012124 232 IL-CSPSNPTGSVYPKNLLDEIARIV-AKHPRLLVLSDEIYEHIIYAP-A--THTSFASL---PGMWERTLTVNGFSKAF 303 (470)
Q Consensus 232 ~l-~~p~nPtG~~~s~~~~~~l~~~~-~~~~~~~iI~Dd~~~~~~~~~-~--~~~~~~~~---~~~~~~~i~i~S~sK~~ 303 (470)
++ ++||||||.+++.+++++|+++| ++| |++||+||+|..+.|.+ . ...++..+ ....+++++++||||.+
T Consensus 177 ~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~ 255 (423)
T 3ez1_A 177 LFVPTYSNPGGETISLEKARRLAGLQAAAP-DFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKIT 255 (423)
T ss_dssp EECSSSCTTTCCCCCHHHHHHHHTCCCSST-TCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTS
T ss_pred EECCCCCCCCCcCCCHHHHHHHHHHHHhcc-CCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhc
Confidence 75 68999999999999999999999 999 99999999999766644 2 22344433 12358999999999995
Q ss_pred ccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHHHHHhcc----C
Q 012124 304 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL--GYAGGEVVSKMVKAFRERRDFLVKSFGE----L 377 (470)
Q Consensus 304 ~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~ 377 (470)
++|+|+||+++++++++.+........++++.+.|.++..+++. +.+ .+++++.++.|+++++.+.+.|.+ +
T Consensus 256 -~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 333 (423)
T 3ez1_A 256 -FAGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGL-EGLMRDHAAIIAPKFRAVDEVLRAELGEG 333 (423)
T ss_dssp -CSSSSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred -cCCcceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 69999999999999999999988888889999999999999986 443 678888999999998888877755 4
Q ss_pred C-CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC-CCCCC-----CCCcEEEEeec-CHHH
Q 012124 378 E-GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP-GDAFG-----DDTCIRISYAA-SLTT 449 (470)
Q Consensus 378 ~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~p-g~~f~-----~~~~iRls~~~-~~~~ 449 (470)
+ ++.+..|.+|+|+|++++.. +..++.+.|. ++||.+.| |..|+ .++++||+++. ++++
T Consensus 334 ~~~~~~~~p~~g~~~~~~~~~~------------~~~~~~~~l~-~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~~~~~ 400 (423)
T 3ez1_A 334 GEYATWTLPKGGYFISLDTAEP------------VADRVVKLAE-AAGVSLTPAGATYPAGQDPHNRNLRLAPTRPPVEE 400 (423)
T ss_dssp TSSEEECCCSBSSCEEEEESSS------------CHHHHHHHHH-HTTEECCCTTTTSSTTCCSSSCEEEECCSSSCHHH
T ss_pred CCceEEeCCCccEEEEEECCCC------------cHHHHHHHHH-HCCcEEecCcccccCCCCCCCCeEEEEcCCCCHHH
Confidence 2 37778889999999999864 5667777665 55999999 66665 25799999987 9999
Q ss_pred HHHHHHHHHHHHHhh
Q 012124 450 LQAAVERIKKGLLTL 464 (470)
Q Consensus 450 i~~~l~~l~~~l~~~ 464 (470)
+++++++|+++++++
T Consensus 401 i~~~~~~l~~~l~~~ 415 (423)
T 3ez1_A 401 VRTAMQVVAACIRLA 415 (423)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998765
No 63
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=100.00 E-value=4.8e-46 Score=372.13 Aligned_cols=369 Identities=16% Similarity=0.145 Sum_probs=296.7
Q ss_pred cccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCC-C----CCChHHHHHHHHHHHHc--CCCCCCCCcCcHHHHHHH
Q 012124 68 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP-D----FDTPVLIAEAGINAIRE--GFTRYTPNAGTLELRSAI 140 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~-~----~~~~~~~~~a~~~~~~~--~~~~y~~~~g~~~lr~~i 140 (470)
..++...+++++..+.....+. .++++|+|+.|.| + ..+++.+.+++.+.+.+ ....|++..|..+||+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~l 83 (412)
T 1ajs_A 6 FAEVPQAQPVLVFKLIADFRED--PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCA 83 (412)
T ss_dssp TTTCCCCCCCHHHHHHHHHHTC--CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHH
T ss_pred hhhCcccCCchHHHHHHHHhhc--CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHH
Confidence 3445666677666665544422 4678999999986 3 23468899999888732 456798899999999999
Q ss_pred HHHHHHHcCCCCCCCcEEE--ecChHHHHHHHHH--HhcCCC-----CeEEEcCCCCCChHHHHHHcCCE-EEEecCcCC
Q 012124 141 CHKLKEENGLSYTPDQILV--SNGAKQSILQAVL--AVCSPG-----DEVIIPAPFWVSYPEMARIADAT-PVILPTRIS 210 (470)
Q Consensus 141 a~~l~~~~g~~~~~~~i~i--t~g~~~al~~~~~--~l~~~g-----d~Vlv~~p~y~~~~~~~~~~g~~-~~~v~~~~~ 210 (470)
++++...+|+.+++++|++ |+|++++++++++ .++++| |+|++++|+|+++...++..|++ ++.++++.+
T Consensus 84 a~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 163 (412)
T 1ajs_A 84 SRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDT 163 (412)
T ss_dssp HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEET
T ss_pred HHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecC
Confidence 9999765665567899999 9999999999964 456899 99999999999999999999999 999998655
Q ss_pred CCCccCHHhHhhhccC---CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCC--CCcccccc
Q 012124 211 ENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP--ATHTSFAS 285 (470)
Q Consensus 211 ~~~~~d~~~l~~~l~~---~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~--~~~~~~~~ 285 (470)
+++.+|++.|++++++ +++++++++||||||.++|.+++++|+++|++| |++||+||+|.++.+++ ....++..
T Consensus 164 ~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~ 242 (412)
T 1ajs_A 164 EKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRR-FLFPFFDSAYQGFASGNLEKDAWAIRY 242 (412)
T ss_dssp TTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTTTTSCHHHHTHHHHH
T ss_pred CCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEcccccccCCcccccchHHHH
Confidence 6678999999998864 667788899999999999999999999999999 99999999999988764 12234443
Q ss_pred cCCCCCceEEEeccCcccccccceeeEEEc---CHH----HHHHHHHHhhhccCCCChHHHHHHHHHHhcCC----CChH
Q 012124 286 LPGMWERTLTVNGFSKAFAMTGWRLGYIAG---PKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGY----AGGE 354 (470)
Q Consensus 286 ~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~----~~~~ 354 (470)
+....+++|++.||||.+|++|+|+||+++ +++ +++.+.........+++.+.|.++.++|+.+. + ++
T Consensus 243 ~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~-~~ 321 (412)
T 1ajs_A 243 FVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEW-TG 321 (412)
T ss_dssp HHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHH-HH
T ss_pred HhccCCcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHH-HH
Confidence 432357899999999999977999999999 887 44445554444444569999999999998631 1 35
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC---CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC
Q 012124 355 VVSKMVKAFRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 431 (470)
Q Consensus 355 ~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~ 431 (470)
+++++++.++++++++.+.|++++ ++.+..+.+|+|+|+.+ + .+++..+++++||.+.|+
T Consensus 322 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~~l~~~gv~v~~~- 384 (412)
T 1ajs_A 322 NVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGL---------------N-PKQVEYLINQKHIYLLPS- 384 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCC---------------C-HHHHHHHHHTTCEECCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCC---------------C-HHHHHHHHHhCCEEecCC-
Confidence 788999999999999999999873 47777888999999765 3 244555666779999884
Q ss_pred CCCCCCcEEEEeec-CHHHHHHHHHHHHHHHHhh
Q 012124 432 AFGDDTCIRISYAA-SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 432 ~f~~~~~iRls~~~-~~~~i~~~l~~l~~~l~~~ 464 (470)
+|++++. +++++++++++|+++++++
T Consensus 385 -------~Ris~~~~~~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 385 -------GRINMCGLTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp -------SEEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred -------cEEEeeeCCHHHHHHHHHHHHHHHHhc
Confidence 5999996 8899999999999998764
No 64
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=100.00 E-value=3.9e-45 Score=358.36 Aligned_cols=322 Identities=21% Similarity=0.335 Sum_probs=271.9
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 174 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l 174 (470)
++|+|+.|.+++++|+.+ + + .....|+++ +..+||+++++++ | +++++|++|+|++++++++++++
T Consensus 30 ~~i~l~~~~~~~~~~~~v--a----~-~~~~~Y~~~-~~~~lr~~la~~~----~--~~~~~v~~~~G~~~ai~~~~~~~ 95 (356)
T 1fg7_A 30 GDVWLNANEYPTAVEFQL--T----Q-QTLNRYPEC-QPKAVIENYAQYA----G--VKPEQVLVSRGADEGIELLIRAF 95 (356)
T ss_dssp CSEECSSCCCSSCCCCCC--C----C-CCTTSCCCS-SCHHHHHHHHHHH----T--SCGGGEEEESHHHHHHHHHHHHH
T ss_pred ceEEeeCCCCCCCCCHhH--h----h-hhhccCCCc-cHHHHHHHHHHHh----C--CChHHEEEcCCHHHHHHHHHHHH
Confidence 579999999988887665 1 2 346789554 6899999999997 3 46789999999999999999999
Q ss_pred cCCC-CeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHH
Q 012124 175 CSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 253 (470)
Q Consensus 175 ~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~ 253 (470)
+++| |+|++++|+|+++...++..|++++.+|++ +++.+|++.++++++ ++++|++++||||||.++|.+++++|+
T Consensus 96 ~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~ 172 (356)
T 1fg7_A 96 CEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTL--DNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLL 172 (356)
T ss_dssp CCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCC--TTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred hCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCC--CCCCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 9999 999999999999999999999999999986 356799999999998 899999999999999999999999999
Q ss_pred HHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCC
Q 012124 254 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 333 (470)
Q Consensus 254 ~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~ 333 (470)
++|+ + |++||+||+|.++.. ..++..+....+++++++||||.+|++|+|+||+++++++++.+......+ +
T Consensus 173 ~~~~-~-~~~li~De~~~~~~~----~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~--~ 244 (356)
T 1fg7_A 173 ELTR-G-KAIVVADEAYIEFCP----QASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPY--P 244 (356)
T ss_dssp HHHT-T-TCEEEEECTTGGGSG----GGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHSCSS--C
T ss_pred HhCC-C-CCEEEEEccchhhcC----CCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHHHHHHHHhcCCC--C
Confidence 9999 9 999999999998652 133444433357899999999999999999999999999999988766543 6
Q ss_pred CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHH
Q 012124 334 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 413 (470)
Q Consensus 334 ~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (470)
.+.+.|.++.++|++.. .+++++.++.++++++.+.+.|++++++....|.+++|+|++++ +..
T Consensus 245 ~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~--------------~~~ 308 (356)
T 1fg7_A 245 LSTPVADIAAQALSPQG--IVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK--------------ASS 308 (356)
T ss_dssp SCHHHHHHHHHHTSHHH--HHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET--------------THH
T ss_pred CCHHHHHHHHHHhcCcc--HHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC--------------CHH
Confidence 89999999999997521 12488999999999999999999886543344567788999986 456
Q ss_pred HHHHHHHHcCCEEEEC-CCCCCCCCcEEEEeecCHHHHHHHHHHHHH
Q 012124 414 SLCRYLLDKAQVALVP-GDAFGDDTCIRISYAASLTTLQAAVERIKK 459 (470)
Q Consensus 414 ~l~~~L~~~~gI~v~p-g~~f~~~~~iRls~~~~~~~i~~~l~~l~~ 459 (470)
++++.|. ++||.+.| |..|+.++++|++++ +++++++++++|++
T Consensus 309 ~l~~~L~-~~gI~v~~~g~~~~~~~~iRis~~-~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 309 AVFKSLW-DQGIILRDQNKQPSLSGCLRITVG-TREESQRVIDALRA 353 (356)
T ss_dssp HHHHHHH-HTTEECEECTTSTTCTTEEEEECC-CHHHHHHHHHHHHT
T ss_pred HHHHHHH-HCCEEEEECCCCCCCCCeEEEEeC-CHHHHHHHHHHHHh
Confidence 7888885 55999999 888887789999998 57889998888865
No 65
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=100.00 E-value=8.7e-46 Score=368.36 Aligned_cols=363 Identities=18% Similarity=0.163 Sum_probs=289.6
Q ss_pred ccccCCchHHHHHHHHHHHHhcCCCeEEccCC---CCCCCCh--HHHHHHHHH-HHHc-CCCCCCCCcCcHHHHHHHHHH
Q 012124 71 VNAVKPSKTVAITDQATALAQAGVSVIRLAAG---EPDFDTP--VLIAEAGIN-AIRE-GFTRYTPNAGTLELRSAICHK 143 (470)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g---~~~~~~~--~~~~~a~~~-~~~~-~~~~y~~~~g~~~lr~~ia~~ 143 (470)
+...++.....+...... ...+++|+|+.| +|+..+| +.+++++.+ ++.. ....|++..|..++|++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~ 82 (397)
T 3fsl_A 5 VDAYAGDPILTLMERFKE--DPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPL 82 (397)
T ss_dssp CCCCCCCHHHHHHHHHHT--CCCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHH
T ss_pred CCCCCCCchhhHHHHHhc--CCCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHH
Confidence 334455555444333321 234478999999 5665554 899999999 8875 467898889999999999999
Q ss_pred HHHHcCCCCCCC--cEEEecChHHHHHHHH--HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHh
Q 012124 144 LKEENGLSYTPD--QILVSNGAKQSILQAV--LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKV 219 (470)
Q Consensus 144 l~~~~g~~~~~~--~i~it~g~~~al~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~ 219 (470)
+....+..++++ +|++|+|+++++.+++ ..++++||+|++++|+|+++...++..|++++.+++..++++.+|++.
T Consensus 83 ~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 162 (397)
T 3fsl_A 83 LFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFND 162 (397)
T ss_dssp HHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHH
T ss_pred HhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHH
Confidence 976544444778 9999999999999995 456799999999999999999999999999999999655677899999
Q ss_pred Hhhhcc---CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCC-CCcccccccCCCCCceEE
Q 012124 220 LESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASLPGMWERTLT 295 (470)
Q Consensus 220 l~~~l~---~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~-~~~~~~~~~~~~~~~~i~ 295 (470)
|++.++ ++++++++++||||||.+++.+++++|+++|++| |++||+||+|.++.+++ ....++..+....+++++
T Consensus 163 l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 241 (397)
T 3fsl_A 163 LLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKAR-ELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALV 241 (397)
T ss_dssp HHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEE
T ss_pred HHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhC-CEEEEEecCchhhccCcccccHHHHHHHhcCCCEEE
Confidence 999997 5678888899999999999999999999999999 99999999999998863 233444444333689999
Q ss_pred EeccCcccccccceeeEEEc---CHHHHHHHH-H---HhhhccCCCChHHHHHHHHHHhcCCC---ChHHHHHHHHHHHH
Q 012124 296 VNGFSKAFAMTGWRLGYIAG---PKHFVAACN-K---IQSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMVKAFRE 365 (470)
Q Consensus 296 i~S~sK~~~~~G~r~G~~~~---~~~~~~~l~-~---~~~~~~~~~~~~~q~a~~~~l~~~~~---~~~~~~~~~~~~~~ 365 (470)
++||||.+|++|+|+||+++ .+++++.+. . .......+++.+.|.++..++..+.+ ..++++++++.+++
T Consensus 242 ~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 321 (397)
T 3fsl_A 242 SNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILA 321 (397)
T ss_dssp EEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred EecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999974 456555443 2 22234456688999999988885321 04678899999999
Q ss_pred HHHHHHHHhccCC---CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEE
Q 012124 366 RRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 442 (470)
Q Consensus 366 ~~~~l~~~L~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls 442 (470)
+++.+.+.|++++ |+.+..+.+|+|+|+.++ ...+ ..+++++||.+.||. |++
T Consensus 322 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~-~~~l~~~gi~v~~g~--------Ris 377 (397)
T 3fsl_A 322 MRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS---------------AAQV-DRLREEFGVYLIASG--------RMC 377 (397)
T ss_dssp HHHHHHHHHHHHCTTSCCTHHHHCCSSEEECCCC---------------HHHH-HHHHHTTCEECCTTC--------EEE
T ss_pred HHHHHHHHHHhcCCCCCceeecCCceEEEecCCC---------------HHHH-HHHHHhCCEEECCCC--------eEE
Confidence 9999999999864 688888889999998763 3344 445566799999974 999
Q ss_pred eec-CHHHHHHHHHHHHHH
Q 012124 443 YAA-SLTTLQAAVERIKKG 460 (470)
Q Consensus 443 ~~~-~~~~i~~~l~~l~~~ 460 (470)
++. +++++++++++|+++
T Consensus 378 ~~~~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 378 VAGLNTANVQRVAKAFAAV 396 (397)
T ss_dssp GGGCCTTTHHHHHHHHHHH
T ss_pred EEecCHhhHHHHHHHHHhh
Confidence 998 888899999999875
No 66
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=100.00 E-value=5.9e-46 Score=371.52 Aligned_cols=369 Identities=15% Similarity=0.115 Sum_probs=291.2
Q ss_pred ccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCC-CC----CChHHHHHHHHH-HHHc-CCCCCCCCcCcHHHHHHHH
Q 012124 69 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP-DF----DTPVLIAEAGIN-AIRE-GFTRYTPNAGTLELRSAIC 141 (470)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~-~~----~~~~~~~~a~~~-~~~~-~~~~y~~~~g~~~lr~~ia 141 (470)
.++...++.+...+....... .++++|+|+.|.| +. .+++.+.+++.+ .+.. ....|++..|..+||++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia 83 (412)
T 1yaa_A 6 NNIELLPPDALFGIKQRYGQD--QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAA 83 (412)
T ss_dssp TTCCCCCCCTTHHHHHHHHTC--CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHH
T ss_pred ccCcccCCCcHHHHHHHHhcC--CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHH
Confidence 445556666555554433221 4567899999986 33 346889999988 7754 3467988899999999999
Q ss_pred HHHHHHcCCCCCCCcEEE--ecChHHHHHHHH--HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCH
Q 012124 142 HKLKEENGLSYTPDQILV--SNGAKQSILQAV--LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP 217 (470)
Q Consensus 142 ~~l~~~~g~~~~~~~i~i--t~g~~~al~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 217 (470)
+++.+.+|+.+++++|++ |+|+++++.+++ ..++.+||+|++++|+|+++...++..|++++.+++..++++.+|+
T Consensus 84 ~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 163 (412)
T 1yaa_A 84 KIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDL 163 (412)
T ss_dssp HHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECH
T ss_pred HHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCH
Confidence 999766676667899999 999999999884 3445799999999999999999999999999999983233577999
Q ss_pred HhHhhhccCC--ceEE-EEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCC--CCcccccccCCCCC-
Q 012124 218 KVLESKLTEK--SRLL-ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP--ATHTSFASLPGMWE- 291 (470)
Q Consensus 218 ~~l~~~l~~~--~~~i-~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~--~~~~~~~~~~~~~~- 291 (470)
+.|+++++++ .+++ ++++||||||.+++.+++++|+++|++| |++||+||+|.++.+++ ....++..+....+
T Consensus 164 ~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (412)
T 1yaa_A 164 NGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASK-NHIALFDTAYQGFATGDLDKDAYAVRLGVEKLST 242 (412)
T ss_dssp HHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEecccccccCCcccchhHHHHHHHhcCCC
Confidence 9999998643 3444 4599999999999999999999999999 99999999999988764 12223333322124
Q ss_pred --ceEEEeccCcccccccceeeEEE--c-----CHH----HHHHHHHHhhhccCCCChHHHHHHHHHHhcCCC---ChHH
Q 012124 292 --RTLTVNGFSKAFAMTGWRLGYIA--G-----PKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYA---GGEV 355 (470)
Q Consensus 292 --~~i~i~S~sK~~~~~G~r~G~~~--~-----~~~----~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~---~~~~ 355 (470)
++++++||||.+|++|+|+||++ + +++ +++.+.........+++.+.|.++.++|+.+.+ .+++
T Consensus 243 ~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 322 (412)
T 1yaa_A 243 VSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKD 322 (412)
T ss_dssp TCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHH
Confidence 89999999999997799999998 7 566 777777755555556789999999999986320 0357
Q ss_pred HHHHHHHHHHHHHHHHHHhccCC---CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC
Q 012124 356 VSKMVKAFRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 432 (470)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~ 432 (470)
++++++.++++++.+.+.|++++ ++++..+.+|+|+|+.+ +...+ ..+++++||.+.|
T Consensus 323 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~-~~~l~~~gi~v~~--- 383 (412)
T 1yaa_A 323 MVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL---------------TPQMV-KRLEETHAVYLVA--- 383 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC---------------CHHHH-HHHHHHHCEECCT---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCC---------------CHHHH-HHHHHhCCEEecc---
Confidence 89999999999999999998874 48888889999999765 33445 5566666999987
Q ss_pred CCCCCcEEEEeec-CHHHHHHHHHHHHHHHHhh
Q 012124 433 FGDDTCIRISYAA-SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 433 f~~~~~iRls~~~-~~~~i~~~l~~l~~~l~~~ 464 (470)
++||+++. +++++++++++|+++++.+
T Consensus 384 -----~~Ris~~~~~~~~i~~~~~~l~~~~~~~ 411 (412)
T 1yaa_A 384 -----SGRASIAGLNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp -----TSEEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred -----CcEEEEccCCHhHHHHHHHHHHHHHHhh
Confidence 57999997 8899999999999988753
No 67
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=100.00 E-value=2.2e-46 Score=374.34 Aligned_cols=368 Identities=13% Similarity=0.084 Sum_probs=282.5
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCC-CCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP-DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 145 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~ 145 (470)
+..++...++++.....+.... ...+++|+|+.|+| ++..++.+.+++.++.......|++..|.++||+++++++.
T Consensus 16 ~~~~~~~~~~~~i~~~~~~~~~--~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a~~~~~~~y~~~~g~~~lr~~ia~~~~ 93 (409)
T 4eu1_A 16 TQGPGSMGKPDPILGLGQDFRM--DPAKRKVNLSIGVYRDDADQPFVLECVKQATLGTNMDYAPVTGIASFVEEAQKLCF 93 (409)
T ss_dssp -----------CHHHHHHHHHH--CCCSSCEECCCSSCCCTTSCCCCCHHHHTCCCCSCCCCCCTTCCHHHHHHHHHHHH
T ss_pred HhhcCCCCCCChHHHHHHHHhh--CCCcCceeeeeeEEECCCCCEeecHHHHhcCccccccCCCCCCcHHHHHHHHHHHc
Confidence 4455666666655444333322 23457899999998 87777777777777744456889999999999999999984
Q ss_pred HHcCCCCCCCcE--EEecChHHHHHHHH---HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhH
Q 012124 146 EENGLSYTPDQI--LVSNGAKQSILQAV---LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVL 220 (470)
Q Consensus 146 ~~~g~~~~~~~i--~it~g~~~al~~~~---~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l 220 (470)
...+.++++++| ..|.|+++++.++. ..++++||+|++++|+|+++...++..|++++.+|++.++++.+|++.|
T Consensus 94 ~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l 173 (409)
T 4eu1_A 94 GPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGM 173 (409)
T ss_dssp CSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHH
T ss_pred CCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHH
Confidence 211111226788 45899999988754 4456899999999999999999999999999999996666788999999
Q ss_pred hhhcc---CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCC--CcccccccCCCCCceEE
Q 012124 221 ESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA--THTSFASLPGMWERTLT 295 (470)
Q Consensus 221 ~~~l~---~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~--~~~~~~~~~~~~~~~i~ 295 (470)
++.++ ++++++++++||||||.+++.+++++|+++|++| |++||+||+|+++.+++. ...++..+....+++|+
T Consensus 174 ~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (409)
T 4eu1_A 174 LECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRR-NHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIV 252 (409)
T ss_dssp HHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEE
T ss_pred HHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEeccccccccCCcccchHHHHHHHhhCCcEEE
Confidence 99985 3456666799999999999999999999999999 999999999999888652 12333333223578999
Q ss_pred EeccCcccccccceeeEE---EcCHH----HHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCC---hHHHHHHHHHHHH
Q 012124 296 VNGFSKAFAMTGWRLGYI---AGPKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYAG---GEVVSKMVKAFRE 365 (470)
Q Consensus 296 i~S~sK~~~~~G~r~G~~---~~~~~----~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~---~~~~~~~~~~~~~ 365 (470)
++||||.+|++|+|+||+ +++++ +++.+.........+++.+.|.++..+|+++.+. .++++++++.+++
T Consensus 253 ~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (409)
T 4eu1_A 253 AQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAE 332 (409)
T ss_dssp EEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999996 56677 6777777666667778899999999999863210 3457889999999
Q ss_pred HHHHHHHHhccCC--C-CeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEE
Q 012124 366 RRDFLVKSFGELE--G-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 442 (470)
Q Consensus 366 ~~~~l~~~L~~~~--g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls 442 (470)
+++.+.+.|++++ + +.+..|.+|+|+|+.++ .+++..|++++||.+.|| .|++
T Consensus 333 ~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~ll~~~gv~v~p~--------~Ri~ 388 (409)
T 4eu1_A 333 VRKRLVSELKACGSVHDWSHIERQVGMMAYTGLT----------------REQVELLRSEYHIYMTLN--------GRAA 388 (409)
T ss_dssp HHHHHHHHHHHTTCCSCCHHHHHSCSSEEECCCC----------------HHHHHHHHHHHCEECCTT--------CEEE
T ss_pred HHHHHHHHHHhcCCCCCcceecCCceEEEEeCCC----------------HHHHHHHHHcCCEEEcCC--------CEEE
Confidence 9999999998872 1 77778899999996653 245667777779999986 3999
Q ss_pred eec-CHHHHHHHHHHHHHHH
Q 012124 443 YAA-SLTTLQAAVERIKKGL 461 (470)
Q Consensus 443 ~~~-~~~~i~~~l~~l~~~l 461 (470)
++. +++++++++++|++++
T Consensus 389 ~~~~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 389 VSGLNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp GGGCCTTTHHHHHHHHHHHH
T ss_pred EEecCHhhHHHHHHHHHHHh
Confidence 987 7788999999998876
No 68
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=100.00 E-value=3.6e-46 Score=376.73 Aligned_cols=368 Identities=17% Similarity=0.152 Sum_probs=291.9
Q ss_pred cccccccCCchHHHHHHHHHHHHhcCC-CeEEccCCCC-CCCCh----HHHHHHHHHHHH---cCCCCCCCCcCcHHHHH
Q 012124 68 SPRVNAVKPSKTVAITDQATALAQAGV-SVIRLAAGEP-DFDTP----VLIAEAGINAIR---EGFTRYTPNAGTLELRS 138 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~l~~g~~-~~~~~----~~~~~a~~~~~~---~~~~~y~~~~g~~~lr~ 138 (470)
...+...++.++..+ .....+++. .+|+|+.|.| +...+ +.+.+++.+... .....|.+..|.+++|+
T Consensus 25 ~~~~~~~~~~~i~~~---~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~ 101 (448)
T 3meb_A 25 FSGFPASPPDAILNL---TVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLE 101 (448)
T ss_dssp TTTCCCCCCCTTHHH---HHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHH
T ss_pred HhcCCCCCCChHHHH---HHHHHhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHH
Confidence 334445555554444 344445554 4799999998 65443 566666555441 35678989999999999
Q ss_pred HHHHHHHHHcCCCC---CCCcEEE--ecChHHHHHH--HHHHhcCCCCeEEEcCCCCCChHHHHH----HcCCEEEEecC
Q 012124 139 AICHKLKEENGLSY---TPDQILV--SNGAKQSILQ--AVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVILPT 207 (470)
Q Consensus 139 ~ia~~l~~~~g~~~---~~~~i~i--t~g~~~al~~--~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~ 207 (470)
++++++ +|... ++++|++ |+|+++++.+ .+..++.+||+|++++|+|+++...++ ..|++++.+|+
T Consensus 102 ~ia~~l---~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~ 178 (448)
T 3meb_A 102 AAQFLM---FGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTY 178 (448)
T ss_dssp HHHHHH---HCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECC
T ss_pred HHHHHh---cCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEec
Confidence 999998 35432 2689999 9999999987 455677899999999999999999999 99999999999
Q ss_pred cCCC-CCccCHHhHhhhcc---CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCC--Ccc
Q 012124 208 RISE-NFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA--THT 281 (470)
Q Consensus 208 ~~~~-~~~~d~~~l~~~l~---~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~--~~~ 281 (470)
..++ ++.+|+|.|+++++ ++++++++++||||||.+++.+++++|+++|++| |+++|+||+|+++.+++. ...
T Consensus 179 ~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~-~~~li~Deay~~~~~~~~~~~~~ 257 (448)
T 3meb_A 179 LRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEK-KHIAFFDSAYQGFATGSFEADAF 257 (448)
T ss_dssp BCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTTSSSCHHHHTH
T ss_pred cccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHC-CCEEEEecccccccCCCcccCch
Confidence 4444 68899999999996 3577778899999999999999999999999999 999999999999887641 122
Q ss_pred cccccCCCCCceEEEeccCcccccccceeeEE--Ec--------C-H----HHHHHHHHHhhhccCCCChHHHHHHHHHH
Q 012124 282 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYI--AG--------P-K----HFVAACNKIQSQFTSGASSISQKAGVAAL 346 (470)
Q Consensus 282 ~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~--~~--------~-~----~~~~~l~~~~~~~~~~~~~~~q~a~~~~l 346 (470)
++..+....+++++++||||.+|++|+|+||+ ++ + + ++++.+....+....+++.+.|.++..+|
T Consensus 258 ~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l 337 (448)
T 3meb_A 258 AVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIV 337 (448)
T ss_dssp HHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred hHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHh
Confidence 33333223578999999999999999999998 66 4 4 67777777677777788999999999999
Q ss_pred hcCCCC---hHHHHHHHHHHHHHHHHHHHHhccC--CC------CeecCCCceEEEeeeccCccCCcccCCCCCCCHHHH
Q 012124 347 GLGYAG---GEVVSKMVKAFRERRDFLVKSFGEL--EG------VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESL 415 (470)
Q Consensus 347 ~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~--~g------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l 415 (470)
.++.+. .+++++++++++++++.+.+.|+++ ++ +.+..|.+|+|+|+.++ .++
T Consensus 338 ~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----------------~~~ 401 (448)
T 3meb_A 338 HDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLT----------------PEH 401 (448)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCC----------------HHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCC----------------HHH
Confidence 863211 2458889999999999999999886 56 77778899999997763 255
Q ss_pred HHHHHHcCCEEEECCCCCCCCCcEEEEeec-CHHHHHHHHHHHHHHHHhhC
Q 012124 416 CRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 416 ~~~L~~~~gI~v~pg~~f~~~~~iRls~~~-~~~~i~~~l~~l~~~l~~~~ 465 (470)
+..|++++||.+.||+ .|||++. +++++++++++|+++++++.
T Consensus 402 ~~~ll~~~gV~v~~G~-------gRis~a~~~~~~i~~~~~~l~~~l~~~~ 445 (448)
T 3meb_A 402 VDYLKEKWSIYLVKAG-------GRMSMCGLTESNCDYVAEAIHDAVTKLP 445 (448)
T ss_dssp HHHHHHHHCEEECSGG-------GEEEGGGCCTTTHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhCCEEEeCCC-------cEEEEecCCHHHHHHHHHHHHHHHHhcc
Confidence 6677777799999986 2999998 88889999999999998543
No 69
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=100.00 E-value=2.6e-44 Score=353.59 Aligned_cols=337 Identities=19% Similarity=0.268 Sum_probs=279.1
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 171 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~ 171 (470)
+++++|||+.|.+++.+++.+.+++.+.+.. ...|+ ..|..++|+++++++ | +++++|++|+|+++++.+++
T Consensus 22 ~~~~~idl~~~~~~~~~~~~v~~a~~~~~~~-~~~y~-~~~~~~l~~~la~~~----~--~~~~~v~~~~g~~~al~~~~ 93 (364)
T 1lc5_A 22 SPDQLLDFSANINPLGMPVSVKRALIDNLDC-IERYP-DADYFHLHQALARHH----Q--VPASWILAGNGETESIFTVA 93 (364)
T ss_dssp CGGGSEECSSCCCTTCCCHHHHHHHHHTGGG-GGSCC-CTTCHHHHHHHHHHH----T--SCGGGEEEESSHHHHHHHHH
T ss_pred CccceEEeccccCCCCCCHHHHHHHHHHHHH-hhcCC-CCCHHHHHHHHHHHH----C--cCHHHEEECCCHHHHHHHHH
Confidence 4557899999998887889999999888754 56784 468999999999997 3 46789999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHH
Q 012124 172 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
+++ +||+|++++|+|+++...++..|++++.+|.+.++++.+ ++.+.+.++++++++++++||||||.++|.+++++
T Consensus 94 ~~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~ 170 (364)
T 1lc5_A 94 SGL--KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQA 170 (364)
T ss_dssp HHH--CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHH
T ss_pred HHc--CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhccCCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence 998 789999999999999999999999999999875444443 57666667778899999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEE-cCHHHHHHHHHHhhhc
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHFVAACNKIQSQF 330 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~-~~~~~~~~l~~~~~~~ 330 (470)
|+++|++| |++||+||+|.++.+++. ++..+.+..+++++++||||.+|++|+|+||++ +++++++.+.....
T Consensus 171 i~~~~~~~-~~~li~De~~~~~~~~~~---~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~-- 244 (364)
T 1lc5_A 171 IADRCKSL-NINLILDEAFIDFIPHET---GFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQM-- 244 (364)
T ss_dssp HHHHHHHH-TCEEEEECTTGGGSTTCC---CSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSC--
T ss_pred HHHHhhhc-CcEEEEECcChhhccCcc---chhhHhccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHhCC--
Confidence 99999999 999999999999877532 222222235789999999999998999999999 99999998887654
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 410 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (470)
.++++++.|.++.++|+. .+++++.++.++++++.+.+.|++++|+.+.++. |.|+|+++++
T Consensus 245 ~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-g~~~~~~~~~------------- 306 (364)
T 1lc5_A 245 PWSVNALAALAGEVALQD----SAWQQATWHWLREEGARFYQALCQLPLLTVYPGR-ANYLLLRCER------------- 306 (364)
T ss_dssp TTCSCHHHHHHHHHGGGC----HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCS-SSEEEEEESC-------------
T ss_pred CCCCCHHHHHHHHHHHhC----cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCC-CeEEEEECCC-------------
Confidence 456899999999999985 5789999999999999999999988888876544 5567888863
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 411 NSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 411 ~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
+..++++.|.++ ||.+.||..|+. ++++|++++. .++++++++.|+++++++.
T Consensus 307 ~~~~l~~~l~~~-gi~v~~g~~~~~~~~~~iRis~~~-~~~~~~l~~~l~~~~~~~~ 361 (364)
T 1lc5_A 307 EDIDLQRRLLTQ-RILIRSCANYPGLDSRYYRVAIRS-AAQNERLLAALRNVLTGIA 361 (364)
T ss_dssp TTCCHHHHHHTT-TEECEECTTSTTCCTTEEEEECCC-HHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHC-CcEEeeCcccCCCCCCEEEEEeCC-HHHHHHHHHHHHHHhhccc
Confidence 234677777765 999999998853 5799999874 6778888888888877654
No 70
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=100.00 E-value=3.9e-44 Score=351.78 Aligned_cols=332 Identities=17% Similarity=0.252 Sum_probs=281.8
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 171 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~ 171 (470)
+++++|||+.|.+++++|+.+.+++.+.+.. ...| +..+..++|+++++++ | +++++|++|+|+++++.+++
T Consensus 24 ~~~~~idl~~~~~~~~~~~~v~~a~~~~~~~-~~~y-~~~~~~~l~~~la~~~----~--~~~~~i~~~~g~t~al~~~~ 95 (361)
T 3ftb_A 24 KGRELLDYSSNINPLGIPKSFLNNIDEGIKN-LGVY-PDVNYRRLNKSIENYL----K--LKDIGIVLGNGASEIIELSI 95 (361)
T ss_dssp ----CEETTCCCCTTCSCHHHHTTHHHHHHG-GGSC-CCTTCHHHHHHHHHHH----T--CCSCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCCCCHHHHHHHHHHHHH-hcCC-CCccHHHHHHHHHHHh----C--CCcceEEEcCCHHHHHHHHH
Confidence 5668899999999988899999999998876 5667 6678999999999997 3 57889999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHH
Q 012124 172 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
+.+ |+|++++|+|+++...++..|++++.++++.+++ ++++.+++++++ ++++++++||||||.+++.+++++
T Consensus 96 ~~~----d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~ 168 (361)
T 3ftb_A 96 SLF----EKILIIVPSYAEYEINAKKHGVSVVFSYLDENMC--IDYEDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIH 168 (361)
T ss_dssp TTC----SEEEEEESCCTHHHHHHHHTTCEEEEEECCTTSC--CCHHHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHH
T ss_pred HHc----CcEEEecCChHHHHHHHHHcCCeEEEeecCcccC--CCHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHH
Confidence 887 8999999999999999999999999999976544 788999999988 999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEE-cCHHHHHHHHHHhhhc
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHFVAACNKIQSQF 330 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~-~~~~~~~~l~~~~~~~ 330 (470)
|+++|++| |+++|+||+|.++.++ . ..+........+++++++||||.+|++|+|+||++ +++++++.+.....
T Consensus 169 i~~~~~~~-~~~li~De~~~~~~~~-~-~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~-- 243 (361)
T 3ftb_A 169 VLKLAEEK-KKTIIIDEAFIEFTGD-P-SSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQN-- 243 (361)
T ss_dssp HHHHHHHH-TCEEEEECSSGGGTCC-T-TSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSC--
T ss_pred HHHHhhhc-CCEEEEECcchhhcCC-c-ccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCC--
Confidence 99999999 9999999999998876 2 23333333346889999999999999999999999 99999998887654
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCe-ecCCCceEEEeeeccCccCCcccCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYYGSEAEGFGKI 409 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 409 (470)
.++++++.|.++.++|+. .+++++.++.++++++.+.+.|++++++. +.++.++ |+|+++++.
T Consensus 244 ~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~----------- 307 (361)
T 3ftb_A 244 PWNINCFAEMAAINCLKD----TNYIEESLLWIKKERKRFIEELNKIGFIKRVFSPHAN-FVLCRLENI----------- 307 (361)
T ss_dssp TTCSCHHHHHHHHHTSSC----HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCSSS-EEEEEESSS-----------
T ss_pred CCCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCCCCe-EEEEEcCCC-----------
Confidence 346899999999999984 68899999999999999999999998888 6666555 578888763
Q ss_pred CCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 410 ENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 410 ~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
+..++.+.|.++ ||.+.||..|+. ++++|++++ +++++++.++.|+++.+
T Consensus 308 -~~~~l~~~l~~~-gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 308 -SGEKLYDSLLKE-DIVIRRCCNFIGLDDSFVRFAIK-DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp -CHHHHHHHHHTT-TEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHC-CeEEeeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHh
Confidence 788899988876 999999998864 579999998 55566666666665554
No 71
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=100.00 E-value=2.4e-45 Score=365.10 Aligned_cols=342 Identities=15% Similarity=0.126 Sum_probs=274.4
Q ss_pred CCCeEEccCCC---CCC--CChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEE--ecChH
Q 012124 93 GVSVIRLAAGE---PDF--DTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILV--SNGAK 164 (470)
Q Consensus 93 ~~~~i~l~~g~---~~~--~~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~i--t~g~~ 164 (470)
++++|||+.|. ++. .+++.+.+++.+.+.+ ....|++..|..+||+++++++....+.++++++|++ |+|++
T Consensus 25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~ 104 (396)
T 2q7w_A 25 RPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGT 104 (396)
T ss_dssp ---CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHH
T ss_pred CCCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccch
Confidence 45789999998 333 3468899999888765 4568988999999999999999654333346789998 99999
Q ss_pred HHHHHHHHHh--cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC---CceEEEEcCCCCC
Q 012124 165 QSILQAVLAV--CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNP 239 (470)
Q Consensus 165 ~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~i~l~~p~nP 239 (470)
++++++++.+ +.+||+|++++|+|+++...++..|++++.++++.++++.+|++.|++++++ +++++++++||||
T Consensus 105 ~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~np 184 (396)
T 2q7w_A 105 GALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNP 184 (396)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTT
T ss_pred hhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 9999998766 4699999999999999999999999999999986545678999999999864 3667788999999
Q ss_pred cccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCC-CCcccccccCCCCCceEEEeccCcccccccceeeEEEc---
Q 012124 240 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG--- 315 (470)
Q Consensus 240 tG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~-~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~--- 315 (470)
||.++|.+++++|+++|++| |++||+||+|.++.+++ ....++..++...+++++++||||.+|++|+|+||+++
T Consensus 185 tG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~ 263 (396)
T 2q7w_A 185 TGIDPTLEQWQTLAQLSVEK-GWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTLVAA 263 (396)
T ss_dssp TCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECS
T ss_pred CCCCCCHHHHHHHHHHHHHC-CCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccccccceEEEEcC
Confidence 99999999999999999999 99999999999987753 12233443432246899999999999989999999996
Q ss_pred CH----HHHHHHHHHhhhccCCCChHHHHHHHHHHhcC----CCChHHHHHHHHHHHHHHHHHHHHhccCC---CCeecC
Q 012124 316 PK----HFVAACNKIQSQFTSGASSISQKAGVAALGLG----YAGGEVVSKMVKAFRERRDFLVKSFGELE---GVKMSE 384 (470)
Q Consensus 316 ~~----~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~----~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~ 384 (470)
++ ++++.+.........+++.+.|.++.++|+.+ .+ .++++++++.++++++.+.+.|+++. ++++..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 342 (396)
T 2q7w_A 264 DSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIW-EQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFII 342 (396)
T ss_dssp SHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHH-HHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHH
T ss_pred CHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceec
Confidence 55 45555555444444456999999999999863 11 36788899999999999999999873 378778
Q ss_pred CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec-CHHHHHHHHHHHHHH
Q 012124 385 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKG 460 (470)
Q Consensus 385 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~-~~~~i~~~l~~l~~~ 460 (470)
|.+|+|+|+.++ ... +..+++++||.+.|| +||+++. +++++++++++|+++
T Consensus 343 ~~~~~~~~~~~~---------------~~~-~~~~l~~~gv~v~~~--------~Ris~~~~~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 343 KQNGMFSFSGLT---------------KEQ-VLRLREEFGVYAVAS--------GRVNVAGMTPDNMAPLCEAIVAV 395 (396)
T ss_dssp HCCSSEEECCCC---------------HHH-HHHHHHHHCEECCTT--------CEEEGGGCCTTTHHHHHHHHHHH
T ss_pred CCCceEEEecCC---------------HHH-HHHHHHhcCeeecCC--------ceEEEeecCHHHHHHHHHHHHhc
Confidence 899999998763 333 444555569999884 6999997 889999999999875
No 72
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=100.00 E-value=6.4e-46 Score=368.31 Aligned_cols=332 Identities=18% Similarity=0.191 Sum_probs=265.6
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHH--Hc--CCCCCCCCcCc-----HHHHHHHHHHHHHHcCCCCCC-CcEEEec
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAI--RE--GFTRYTPNAGT-----LELRSAICHKLKEENGLSYTP-DQILVSN 161 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~--~~--~~~~y~~~~g~-----~~lr~~ia~~l~~~~g~~~~~-~~i~it~ 161 (470)
.++++|+|+.|.|++++|+.+.+++.+.. .. ....|++..|. ++||++|++++. .+|+.+.+ ++|++|+
T Consensus 20 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~i~~t~ 98 (391)
T 3bwn_A 20 MSDFVVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDRYIVVGT 98 (391)
T ss_dssp TTTSCEECSSCCCGGGHHHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSEEEEEE
T ss_pred CCCCeeEcCCCCCCCCCCHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCCeEEEeC
Confidence 45678999999999766666666653322 11 45779999998 999999999998 57888877 5999999
Q ss_pred ChHHHHHHHHHHhcCCCC----eEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCC
Q 012124 162 GAKQSILQAVLAVCSPGD----EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 237 (470)
Q Consensus 162 g~~~al~~~~~~l~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~ 237 (470)
|+++++.+++++++++|| +|++++|+|+.+...++..|++++.++++.++ ++ .+++++|++++||
T Consensus 99 G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~---l~--------~~~~k~v~l~~p~ 167 (391)
T 3bwn_A 99 GSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDAWG---FD--------KKGPYIELVTSPN 167 (391)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEESTT---CC--------CCSCEEEEEESSC
T ss_pred ChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecCCHHH---cC--------CCCCEEEEECCCC
Confidence 999999999999999999 99999999999999999999999988875432 22 2578999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEc-C
Q 012124 238 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-P 316 (470)
Q Consensus 238 nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~-~ 316 (470)
||||.+++ +|++.++.+ +++||+||+|.+ + ...++.. ..+++|+++||||.+|++|+|+||+++ +
T Consensus 168 NPtG~~~~-----~l~~~~~~~-~~~ii~De~y~~----~-~~~~l~~---~~~~~i~~~S~SK~~g~~GlRiG~~~~~~ 233 (391)
T 3bwn_A 168 NPDGTIRE-----TVVNRPDDD-EAKVIHDFAYYW----P-HYTPITR---RQDHDIMLFTFSKITGHAGSRIGWALVKD 233 (391)
T ss_dssp TTTCCCCC-----CCC-----C-CCEEEEECTTCS----T-TTSCCCC---CBCCSEEEEEHHHHHSCGGGCEEEEEECC
T ss_pred CCCchhHH-----HHHHHhhcC-CCEEEEeCCCCC----C-CCCcccc---CCCCeEEEEechhhcCCCccceEEEEecC
Confidence 99999997 355532333 399999999973 1 1223322 357899999999999999999999997 9
Q ss_pred HHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCC-------ChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC----
Q 012124 317 KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA-------GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP---- 385 (470)
Q Consensus 317 ~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~---- 385 (470)
+++++.+...+.....+++.+.|.++..+|+++.. .+++++++++.|+++++.+.+.|++++++.+..|
T Consensus 234 ~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~ 313 (391)
T 3bwn_A 234 KEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAF 313 (391)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEE
T ss_pred HHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccc
Confidence 99999999888766778999999999999986420 1568999999999999999999998877766543
Q ss_pred ---------CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-CCcEEEEeecCHHHHHHHHH
Q 012124 386 ---------QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-DTCIRISYAASLTTLQAAVE 455 (470)
Q Consensus 386 ---------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-~~~iRls~~~~~~~i~~~l~ 455 (470)
.+|+|+|+++++. ..+. .+++++||.+.||..|+. ++++|||++.++++++++++
T Consensus 314 ~~f~~~~~~~~g~~~~~~~~~~--------------~~~~-~~l~~~gV~v~pg~~fg~~~~~iRis~~~~~e~i~~~~~ 378 (391)
T 3bwn_A 314 CNYFGKSLESYPAFAWLGTKEE--------------TDLV-SELRRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLE 378 (391)
T ss_dssp ETTTTEEECCCCSEEEEEESSS--------------CCHH-HHHHHTTEECEEGGGGTCCTTEEEEESCSCHHHHHHHHH
T ss_pred cccccccCCCcceEEEecCCcH--------------HHHH-HHHHHCCEEEccCCCCCCCCCEEEEEecCCHHHHHHHHH
Confidence 4456899998731 1233 345566999999999986 68999999999999999999
Q ss_pred HHHHHHHhh
Q 012124 456 RIKKGLLTL 464 (470)
Q Consensus 456 ~l~~~l~~~ 464 (470)
+|++++++.
T Consensus 379 ~L~~~~~~~ 387 (391)
T 3bwn_A 379 RLANMKLIK 387 (391)
T ss_dssp HHHSCC---
T ss_pred HHHHHHHhh
Confidence 999887643
No 73
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=100.00 E-value=6.4e-44 Score=351.17 Aligned_cols=332 Identities=23% Similarity=0.380 Sum_probs=285.9
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 172 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~ 172 (470)
+++|+|+.|.+++++|+.+++++.+.+.. ....|++ .+..+||+++++++ |.+ ++++|++|+|+++++.++++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~ 103 (367)
T 3euc_A 30 HGLVKLDAMENPYRLPPALRSELAARLGEVALNRYPV-PSSEALRAKLKEVM----QVP-AGMEVLLGNGSDEIISMLAL 103 (367)
T ss_dssp TTCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC-CCHHHHHHHHHHHH----TCC-TTCEEEEEEHHHHHHHHHHH
T ss_pred CCeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-CcHHHHHHHHHHHh----CCC-CcceEEEcCCHHHHHHHHHH
Confidence 46899999999998999999999998875 4677844 68999999999997 432 67899999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHHHHH
Q 012124 173 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 173 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
+++++||+|++++|+|+++...++..|++++.++++. ++.+|++.|++++++ ++++|++++||||||.+++.+++++
T Consensus 104 ~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~ 181 (367)
T 3euc_A 104 AAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRA--DFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEA 181 (367)
T ss_dssp HTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCT--TSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHH
T ss_pred HHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCC--CCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHH
Confidence 9999999999999999999999999999999999974 566999999999987 8999999999999999999999999
Q ss_pred HHHHHHhCC-CEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhc
Q 012124 252 IARIVAKHP-RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 330 (470)
Q Consensus 252 l~~~~~~~~-~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~ 330 (470)
|+++|++|+ |+++|+||+|.++.+.+ ..+ .+.. .++++++.||||. +++|+|+||+++++++++.+.....
T Consensus 182 i~~~~~~~~~~~~li~De~~~~~~~~~--~~~--~~~~-~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~~~~~-- 253 (367)
T 3euc_A 182 IVRAAQGSVCRSLVVVDEAYQPFAQES--WMS--RLTD-FGNLLVMRTVSKL-GLAGIRLGYVAGDPQWLEQLDKVRP-- 253 (367)
T ss_dssp HHHHTBTTSCBCEEEEECTTCCSSSCC--SGG--GGGT-CTTEEEEEECCCT-TSCSCCEEEEEECHHHHHHHGGGCC--
T ss_pred HHHhhhhcCCCcEEEEeCcchhhcccc--hHH--HHhh-CCCEEEEecchhh-cccccCceeeeeCHHHHHHHHHhCC--
Confidence 999999873 59999999999866332 111 2222 5789999999999 7899999999999999988876554
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 410 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (470)
.++.+.+.|.++..+|+. .+++++.+++++++++.+.+.|+++||+.+. +..|+|+|++++
T Consensus 254 ~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~-------------- 314 (367)
T 3euc_A 254 PYNVNVLTEATALFALEH----VAVLDEQAAQLRAERSRVAEGMAAHGGVTVF-PSAANFLLARVP-------------- 314 (367)
T ss_dssp SSCCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHHHTSTTCEEC-CCSSSEEEEECS--------------
T ss_pred CCCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC--------------
Confidence 456899999999999985 6788999999999999999999999899865 455667898886
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 411 NSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 411 ~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
+..++.+.|. ++||.+.||..|+. ++++|++++ ++++++++++.|+++++
T Consensus 315 ~~~~l~~~l~-~~gi~v~~~~~~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 315 DAAQTFDRLL-ARKVLIKNVSKMHPLLANCLRVTVS-TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp CHHHHHHHHH-TTTEECEECGGGCGGGTTEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHH-HCCeEEEECCccCCCCCCEEEEecC-CHHHHHHHHHHHHHHhc
Confidence 4567888775 45999999988753 589999988 88899999999998764
No 74
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=100.00 E-value=1.1e-44 Score=359.27 Aligned_cols=371 Identities=13% Similarity=0.129 Sum_probs=279.9
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCC---CCCC--ChHHHHHHHHHHHHcCC-CCCCCCcCcHHHHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGE---PDFD--TPVLIAEAGINAIREGF-TRYTPNAGTLELRSAI 140 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~---~~~~--~~~~~~~a~~~~~~~~~-~~y~~~~g~~~lr~~i 140 (470)
.+.+..+++..+...+........+++.+.|||+.|. ++-. ..+.+++|..+.+..+. ..|.|..|.++||+++
T Consensus 17 ~~~~~~~v~~~p~d~i~~l~~~~~~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~ai 96 (420)
T 4h51_A 17 TAERWQKIQAQAPDVIFDLAKRAAAAKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEA 96 (420)
T ss_dssp HHHHHHTCCCCCCCHHHHHHHHHHHCCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHH
T ss_pred hhHHHhCCCCCCCChHHHHHHHHhcCCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHH
Confidence 4445555655544455555555666666789999994 3322 25788888888776654 4699999999999999
Q ss_pred HHHHHHHcCCCCCCCc--EEEecChHHHHHHHHHH----hcCCCCeEEEcCCCCCChHHHHHHcCCE-EEEecCcCCCCC
Q 012124 141 CHKLKEENGLSYTPDQ--ILVSNGAKQSILQAVLA----VCSPGDEVIIPAPFWVSYPEMARIADAT-PVILPTRISENF 213 (470)
Q Consensus 141 a~~l~~~~g~~~~~~~--i~it~g~~~al~~~~~~----l~~~gd~Vlv~~p~y~~~~~~~~~~g~~-~~~v~~~~~~~~ 213 (470)
++++. |-....+. .+.|.|++.|+...+.. +.+|||+|++++|+|++|..+++..|++ +..++...++++
T Consensus 97 a~~~~---g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~ 173 (420)
T 4h51_A 97 VKIIY---GNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTV 173 (420)
T ss_dssp HHHHH---C---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGT
T ss_pred HHHhc---CCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeecccccccc
Confidence 99984 33233333 34578888877665554 4579999999999999999999999997 445565555667
Q ss_pred ccCHHhHhhhc---cCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccc--ccccCC
Q 012124 214 LLDPKVLESKL---TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS--FASLPG 288 (470)
Q Consensus 214 ~~d~~~l~~~l---~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~--~~~~~~ 288 (470)
.+|.+.+.+.+ .++++++++++||||||.+++.+++++|+++|+++ ++++|+||+|.+|.|++..... +.....
T Consensus 174 ~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~-~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~ 252 (420)
T 4h51_A 174 SLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAK-HHQVFFDSAYQGYASGSLDTDAYAARLFAR 252 (420)
T ss_dssp EECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTTTTSCHHHHTHHHHHHHH
T ss_pred CCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc-CceEeeehhhhhhccCCcccchHHHHhHHh
Confidence 78999888776 35677778899999999999999999999999999 9999999999999887532222 222222
Q ss_pred CCCceEEEeccCcccccccceeeEEEcCHHHH-------HHHHHHhhhccCCCChHHHHHHHHHHhcCCC---ChHHHHH
Q 012124 289 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV-------AACNKIQSQFTSGASSISQKAGVAALGLGYA---GGEVVSK 358 (470)
Q Consensus 289 ~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~-------~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~---~~~~~~~ 358 (470)
..++++++.||||.|+++|+|+||++++.+.. ..+....+....+++...|.++...+.+..+ +...++.
T Consensus 253 ~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~ 332 (420)
T 4h51_A 253 RGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSA 332 (420)
T ss_dssp TTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred hCceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35789999999999999999999999765433 3344455667778999999999999886322 1345778
Q ss_pred HHHHHHHHHHHHHHHhccC--CC-CeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC
Q 012124 359 MVKAFRERRDFLVKSFGEL--EG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD 435 (470)
Q Consensus 359 ~~~~~~~~~~~l~~~L~~~--~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~ 435 (470)
++++|+++|+.+.+.|+++ ++ |.+..+++|||.|+.++ . +.++.| +++||++.|+.
T Consensus 333 m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~~gls---------------~-e~v~~L-~e~~Vy~~~~g---- 391 (420)
T 4h51_A 333 MAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSFLGLS---------------K-AQCEYC-QNHNIFITVSG---- 391 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEECCCC---------------H-HHHHHH-HHTTEECCTTC----
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEecCcC---------------H-HHHHHH-HhCCEEEcCCC----
Confidence 8999999999999999886 22 55567888999997653 3 334555 56699998864
Q ss_pred CCcEEEEeec-CHHHHHHHHHHHHHHHHhhCC
Q 012124 436 DTCIRISYAA-SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 436 ~~~iRls~~~-~~~~i~~~l~~l~~~l~~~~~ 466 (470)
|||++. ++++|+.++++|.++++++.+
T Consensus 392 ----Ris~Agl~~~ni~~~a~aI~~vvr~i~r 419 (420)
T 4h51_A 392 ----RANMAGLTHETALMLAQTINDAVRNVNR 419 (420)
T ss_dssp ----EEEGGGCCHHHHHHHHHHHHHHHC----
T ss_pred ----EEEeccCCHHHHHHHHHHHHHHHHHhhc
Confidence 999998 999999999999999987754
No 75
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=100.00 E-value=2.9e-43 Score=346.76 Aligned_cols=329 Identities=20% Similarity=0.298 Sum_probs=279.2
Q ss_pred EEccCCCCCCCChHHHHHHHHHHHHcC---CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 97 IRLAAGEPDFDTPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 97 i~l~~g~~~~~~~~~~~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
|||+.|.+++++++.+.+++.+.+.+. ...|++..+ .++|+++++++.+.+|+.+++++|++|+|+++++..++++
T Consensus 33 idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~ 111 (369)
T 3cq5_A 33 IRLNTNENPYPPSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQA 111 (369)
T ss_dssp EECSSCCCCSCCCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHH
T ss_pred eeccCCCCCCCCCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHH
Confidence 899999998888999999999988652 677866656 7999999999999888888889999999999999999999
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHHHHHH
Q 012124 174 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEI 252 (470)
Q Consensus 174 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~~l 252 (470)
++++||+|++++|+|+++...++..|++++.+|.+ +++.+|++.+++++++ ++++|++++||||||.++|.+++++
T Consensus 112 l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~~l~~- 188 (369)
T 3cq5_A 112 FGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRG--ADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVER- 188 (369)
T ss_dssp HCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEECC--TTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHH-
T ss_pred hcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecCC--cCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHH-
Confidence 99999999999999999999999999999999975 4467999999999977 8999999999999999999655554
Q ss_pred HHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCC-ceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhcc
Q 012124 253 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE-RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 331 (470)
Q Consensus 253 ~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~ 331 (470)
+|+.+ +++||+||+|+++.++ .+...+.+..+ ++++++||||.+|++|+|+||+++++++++.+......
T Consensus 189 --l~~~~-~~~li~De~~~~~~~~----~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~-- 259 (369)
T 3cq5_A 189 --IINVA-PGIVIVDEAYAEFSPS----PSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDAVMLVRLP-- 259 (369)
T ss_dssp --HHHHC-SSEEEEECTTGGGCCS----CCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTHHHHHHHTTSCT--
T ss_pred --HHHhC-CCEEEEECCchhhcCC----cchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHHHHHHHHHcCCC--
Confidence 55567 7999999999987653 23333322245 89999999999988999999999999998888765543
Q ss_pred CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCC
Q 012124 332 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 411 (470)
Q Consensus 332 ~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 411 (470)
++++.+.|.++.++++. .+++++.++.++++++.+.+.|++. |+.+.++ .|.|+|++++ . +
T Consensus 260 ~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~-~------------~ 320 (369)
T 3cq5_A 260 YHLSALSQAAAIVALRH----SADTLGTVEKLSVERVRVAARLEEL-GYAVVPS-ESNFVFFGDF-S------------D 320 (369)
T ss_dssp TCSCHHHHHHHHHHHHT----HHHHHTHHHHHHHHHHHHHHHHHHH-TCEEECC-SSSEEEEECC-S------------S
T ss_pred CCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHhC-CCEECCC-CCeEEEEECC-C------------C
Confidence 46899999999999985 5688899999999999999999885 8887754 4566888886 2 6
Q ss_pred HHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 412 SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 412 ~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
..++.+.|.+ +||.+.|| +.++++|++++ +++++++++++|+++++
T Consensus 321 ~~~l~~~l~~-~gi~v~~~---~~~~~iRis~~-~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 321 QHAAWQAFLD-RGVLIRDV---GIAGHLRTTIG-VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp HHHHHHHHHH-TTEECBCC---SCTTEEEEECC-CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-CCEEEEEC---CCCCeEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 7788888865 59999998 34689999999 78899999999998875
No 76
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=100.00 E-value=7.3e-45 Score=364.36 Aligned_cols=329 Identities=15% Similarity=0.185 Sum_probs=276.3
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHH-cCCC--CCCCCc-C---cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIR-EGFT--RYTPNA-G---TLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~-~~~~--~y~~~~-g---~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
..+|+|+.|+|++.+|+.+.+++.+.+. .+.. .|++.. | .++||++|++++.+..+..+++++|++|+|++++
T Consensus 56 ~~~i~l~~g~~~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~a 135 (427)
T 2hox_A 56 GCSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQL 135 (427)
T ss_dssp TCCEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHH
T ss_pred CceEEecCcCCCCCCCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHH
Confidence 3679999999998777788888887763 3333 498888 9 9999999999999877766789999999999999
Q ss_pred HHHHHHHh--------cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCC
Q 012124 167 ILQAVLAV--------CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSN 238 (470)
Q Consensus 167 l~~~~~~l--------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~n 238 (470)
+.+++.+| ++|||+|++++|+|+.+...++..|++++. +.+|++.|++++++++++|++++|||
T Consensus 136 l~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~--------~~~d~~~l~~~~~~~~k~v~l~~p~N 207 (427)
T 2hox_A 136 IHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYV--------WAGNAANYVNVSNPEQYIEMVTSPNN 207 (427)
T ss_dssp HHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEE--------EEEEGGGGTTCSCGGGEEEEEESSCT
T ss_pred HHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeee--------ecCCHHHHHHhhcCCceEEEEcCCCC
Confidence 99999999 899999999999999999999999988763 33788999999988899999999999
Q ss_pred CcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEc-CH
Q 012124 239 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PK 317 (470)
Q Consensus 239 PtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~-~~ 317 (470)
|||.+++ +. + + ++.+|.|+.|. + ...++..++ .+++|+++||||.+|++|+|+||+++ ++
T Consensus 208 PtG~~~~-~~-------l--~-~~~~i~d~~~~----~--~~~s~~~~~--~~~~i~~~S~SK~~g~~G~RiG~~~~~~~ 268 (427)
T 2hox_A 208 PEGLLRH-AV-------I--K-GCKSIYDMVYY----W--PHYTPIKYK--ADEDILLFTMSKFTGHSGSRFGWALIKDE 268 (427)
T ss_dssp TTCCCCC-CS-------S--T-TCEEEEECTTC----S--TTTSCCCSC--BCCSEEEEEHHHHTSCGGGCCEEEEECCH
T ss_pred CcccccH-HH-------H--c-CCCEEEeeccc----C--CCCCccccC--CCceEEEEeChhcCCCCCceEEEEEECCH
Confidence 9999999 41 2 2 45677787763 2 233444444 57899999999999999999999999 58
Q ss_pred HHHHHHHHHhhhccCCCChHHHHHHHHHHhcC---------CCChHHHHHHHHHHHHHHHHHHHHhccCCCCee------
Q 012124 318 HFVAACNKIQSQFTSGASSISQKAGVAALGLG---------YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM------ 382 (470)
Q Consensus 318 ~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~------ 382 (470)
++++.+.+.......+++.+.|.++..+|+++ .+ ++++++.++.++++++.+.+.|++++|+.+
T Consensus 269 ~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~ 347 (427)
T 2hox_A 269 SVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTM-RDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQS 347 (427)
T ss_dssp HHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTST-TSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchh-HHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccc
Confidence 99999999888777889999999999999864 12 567888999999999999999998766554
Q ss_pred --------cCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-CCcEEEEeecCHHHHHHH
Q 012124 383 --------SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-DTCIRISYAASLTTLQAA 453 (470)
Q Consensus 383 --------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-~~~iRls~~~~~~~i~~~ 453 (470)
..|.+|+|+|+++++ +..++++.|++++||.+.||..|+. ++++|||++.++++|+++
T Consensus 348 ~~~~~~~~~~p~~g~f~~~~~~~-------------~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~~~~e~l~~~ 414 (427)
T 2hox_A 348 EYCNYFRRMRPPSPSYAWVKCEW-------------EEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQL 414 (427)
T ss_dssp EEETTTTEEECCCCSEEEEEECS-------------GGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSSCHHHHHHH
T ss_pred cccccccccCCCCceEEEEECCC-------------cHHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEecCCHHHHHHH
Confidence 346679999999974 2445777777667999999999986 789999999999999999
Q ss_pred HHHHHHHHHh
Q 012124 454 VERIKKGLLT 463 (470)
Q Consensus 454 l~~l~~~l~~ 463 (470)
+++|++++++
T Consensus 415 l~~l~~~~~~ 424 (427)
T 2hox_A 415 MYYLKDMVKA 424 (427)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999998864
No 77
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=100.00 E-value=1.8e-42 Score=336.67 Aligned_cols=323 Identities=20% Similarity=0.274 Sum_probs=265.1
Q ss_pred hcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHH
Q 012124 91 QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 170 (470)
Q Consensus 91 ~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~ 170 (470)
...+++|+|+.+.+++++++.+.+++.+.+.. ...| +..|..+||+++++++. +++++|++|+|+++++.++
T Consensus 13 ~~~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~-~~~y-~~~~~~~lr~~la~~~~------~~~~~i~~t~G~~~~l~~~ 84 (337)
T 3p1t_A 13 RAAAQAVCLAFNENPEAVEPRVQAAIAAAAAR-INRY-PFDAEPRVMRKLAEHFS------CPEDNLMLVRGIDECFDRI 84 (337)
T ss_dssp -CCCCCEECSSCCCCSCCCHHHHHHHHHHGGG-TTSC-CTTHHHHHHHHHHHHHT------SCGGGEEEESHHHHHHHHH
T ss_pred cCCCCceEeeCCCCCCCCCHHHHHHHHHhhhh-hccC-CCCchHHHHHHHHHHhC------cCHHHEEEeCCHHHHHHHH
Confidence 35567899999999888999999999987754 6678 56799999999999973 5778999999999999999
Q ss_pred HHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHH
Q 012124 171 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 250 (470)
Q Consensus 171 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~ 250 (470)
+..+ +||+|++++|+|+++...++..|++++.++++. ++.+|++.++++ .+++++++++||||||.++|.++
T Consensus 85 ~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~~~~~~-- 156 (337)
T 3p1t_A 85 SAEF--SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTD--DLLLDPNDLAQV--SRDDCVVLANPSNPTGQALSAGE-- 156 (337)
T ss_dssp HHHS--TTSEEEEESSSCSHHHHHHTTSCCEEEEECBCT--TSSBCHHHHTTC--CTTEEEEEESSCTTTCCCCCHHH--
T ss_pred HHhc--CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCCC--CCCCCHHHHHhh--cCCCEEEEeCCCCCCCCCCCHHH--
Confidence 9987 999999999999999999999999999999863 467999999987 46789999999999999999555
Q ss_pred HHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhc
Q 012124 251 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 330 (470)
Q Consensus 251 ~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~ 330 (470)
+.++|+++ +++ |+||+|.++.+.+. .. .. ..+++++++||||.+|++|+|+||+++++++++.+.....
T Consensus 157 -l~~l~~~~-~~~-ivDea~~~~~~~~~--~~---~~-~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~-- 225 (337)
T 3p1t_A 157 -LDQLRQRA-GKL-LIDETYVDYSSFRA--RG---LA-YGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQW-- 225 (337)
T ss_dssp -HHHHHHHC-SEE-EEECTTGGGSSCSS--SC---CC-CBTTEEEEEESSSTTCCTTTCCEEEECCHHHHHHHHTTSC--
T ss_pred -HHHHHHhC-CcE-EEECCChhhccccc--cc---cc-cCCCEEEEeeCchhccCcchheEEEEeCHHHHHHHHhhcC--
Confidence 55556788 874 55999998654332 11 11 2478899999999999999999999999999998877543
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 410 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (470)
.++++.+.|.++..+++. ..+..+.++++.++++.+.+.|+++ |+.+.++.++| +|+..+
T Consensus 226 ~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~~~~~~-------------- 285 (337)
T 3p1t_A 226 FCNVGTLDLHALEAALDN----DRAREAHIAKTLAQRRRVADALRGL-GYRVASSEANF-VLVENA-------------- 285 (337)
T ss_dssp TTCSCHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSE-EEEECT--------------
T ss_pred CCCCCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHC-cCEECCCCCeE-EEEEcC--------------
Confidence 456889999999999985 4455666667777889999999988 88887777665 566665
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 411 NSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 411 ~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
+..++.+.|. ++||.+.||..|+.++++|++++ ++++++++++.|+++++
T Consensus 286 ~~~~~~~~l~-~~gi~v~~g~~~~~~~~iRis~~-~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 286 AGERTLRFLR-ERGIQVKDAGQFGLHHHIRISIG-REEDNDRLLAALAEYSD 335 (337)
T ss_dssp TTHHHHHHHH-HTTEECEEGGGGTCCSEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHH-HCCeEEEECccCCCCCeEEEecC-CHHHHHHHHHHHHHHhh
Confidence 3345666655 45999999999988899999998 67888888888887653
No 78
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=100.00 E-value=2e-42 Score=339.69 Aligned_cols=327 Identities=19% Similarity=0.305 Sum_probs=274.4
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcC---CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
.++++|+|+.|+|++++++.+.+++.+.+.+. ...|+ ..+..+||+++++++ | +++++|++|+|+++++.
T Consensus 24 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~-~~~~~~lr~~la~~~----g--~~~~~i~~t~g~~~al~ 96 (360)
T 3hdo_A 24 DIASWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYP-SASSQKLREVAGELY----G--FDPSWIIMANGSDEVLN 96 (360)
T ss_dssp CCTTSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCC-CSSCHHHHHHHHHHH----T--CCGGGEEEESSHHHHHH
T ss_pred cccceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCC-CCchHHHHHHHHHHh----C--cCcceEEEcCCHHHHHH
Confidence 45678999999999999999999999998775 67784 457799999999997 3 57889999999999999
Q ss_pred HHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHH
Q 012124 169 QAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNL 248 (470)
Q Consensus 169 ~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~ 248 (470)
+++++++++||+|++++|+|+++...++..|++++.++++. ++.+ +.+++.+ +++++++++|+||||.+++.+
T Consensus 97 ~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~--~~~~--~~l~~~~--~~~~v~i~~p~nptG~~~~~~- 169 (360)
T 3hdo_A 97 NLIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTG--DFRI--AGFPERY--EGKVFFLTTPNAPLGPSFPLE- 169 (360)
T ss_dssp HHHHHHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCT--TSSB--TTCCSSB--CSSEEEEESSCTTTCCCCCHH-
T ss_pred HHHHHHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCC--CCCH--HHHHhhc--CCCEEEEeCCCCCCCCCcCHH-
Confidence 99999999999999999999999999999999999999863 3334 5555544 467888999999999999954
Q ss_pred HHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhh
Q 012124 249 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS 328 (470)
Q Consensus 249 ~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~ 328 (470)
+|.++|+++ |++||+||+|.++. +.....+ .+ ..+++++++||||.+|++|+|+||+++++++++.+.....
T Consensus 170 --~l~~l~~~~-~~~li~De~~~~~~--~~~~~~~--~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~ 241 (360)
T 3hdo_A 170 --YIDELARRC-AGMLVLDETYAEFA--ESNALEL--VR-RHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRD 241 (360)
T ss_dssp --HHHHHHHHB-SSEEEEECTTGGGS--SCCCTHH--HH-HCSSEEEEEESTTTTSCTTSCCEEEECCHHHHHHHHHHSC
T ss_pred --HHHHHHHHC-CCEEEEECChHhhC--CcchhHH--hc-cCCCEEEEecchHhhcCCccceeeEeeCHHHHHHHHHhCC
Confidence 566677899 99999999999863 2222222 12 2578999999999999899999999999999999988764
Q ss_pred hccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCC
Q 012124 329 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK 408 (470)
Q Consensus 329 ~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 408 (470)
. ++.+++.|.++.++|+. .+++++.++.++++++.+.+.|+++ |+.+.++. +.|+|+.++..
T Consensus 242 ~--~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~-~~~~~~~~~~~---------- 303 (360)
T 3hdo_A 242 H--YNLDRLAQAACVAALRD----QAYLSECCRRIRETREWFTTELRSI-GYDVIPSQ-GNYLFATPPDR---------- 303 (360)
T ss_dssp S--CCSCHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHHHHHHHT-TCEECCCS-SSEEEEECTTC----------
T ss_pred C--CCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEcCCC-ccEEEEECCCC----------
Confidence 3 56899999999999985 6788999999999999999999988 88876554 55588888743
Q ss_pred CCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 409 IENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 409 ~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
+..++.+.|.++ ||.+.|+..++.++++|++++ ++++++++++.|+++.+
T Consensus 304 --~~~~l~~~l~~~-gi~v~~~~~~~~~~~iRis~~-~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 304 --DGKRVYDGLYAR-KVLVRHFSDPLLAHGMRISIG-TREEMEQTLAALKEIGE 353 (360)
T ss_dssp --CHHHHHHHHHHT-TEECBCCCSTTTTTSEEEECC-CHHHHHHHHHHHHHHHC
T ss_pred --CHHHHHHHHHHC-CEEEEECCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHhc
Confidence 778898888755 999999877656789999998 77899999999988764
No 79
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=100.00 E-value=4e-43 Score=343.21 Aligned_cols=327 Identities=16% Similarity=0.268 Sum_probs=267.0
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 171 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~ 171 (470)
.|+++|||+.|.+++++++.+.+++.+.+ .....|+++.+ .+||+++++++ | +++++|++|+|+++++.+++
T Consensus 13 ~g~~~id~~~~~~~~~~~~~v~~a~~~~~-~~~~~y~~~~~-~~lr~~la~~~----~--~~~~~i~~t~g~~~al~~~~ 84 (350)
T 3fkd_A 13 LSSEIVNFSTTVWTDGDKDHLEKHLVENL-NCIRHYPEPDA-GTLRQMLAKRN----S--VDNNAILVTNGPTAAFYQIA 84 (350)
T ss_dssp ---CCEECSCCSCCCSCCHHHHHHHHHTG-GGGGSCCCTTC-HHHHHHHHHHT----T--CCGGGEEEESHHHHHHHHHH
T ss_pred ccccEEEccCCCCCCCCCHHHHHHHHHhH-hHHhcCCCCcH-HHHHHHHHHHh----C--cCHHHEEEcCCHHHHHHHHH
Confidence 45688999999999999999999998887 44677877666 89999999986 3 57889999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecC-cCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHH
Q 012124 172 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT-RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 250 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~ 250 (470)
+++. ||+|++++|+|+++...++..|++++.+++ +.+++ +++ +++++|++++||||||.+++.++++
T Consensus 85 ~~l~--gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~--~~~--------~~~~~v~i~~p~nptG~~~~~~~l~ 152 (350)
T 3fkd_A 85 QAFR--GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGE--ADF--------SNMDFCWLCNPNNPDGRLLQRTEIL 152 (350)
T ss_dssp HHTT--TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCGGG--SCC--------TTCSEEEEESSCTTTCCCCCHHHHH
T ss_pred HHHC--CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCcccc--Ccc--------CCCCEEEEeCCCCCcCCCCCHHHHH
Confidence 9987 999999999999999999999999999998 54333 333 5789999999999999999998888
Q ss_pred HHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhc
Q 012124 251 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 330 (470)
Q Consensus 251 ~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~ 330 (470)
+|+++|+++ +||+||+|.++.+.+... ...++. .+++++++||||.++++|+|+||+++++++++.+.....
T Consensus 153 ~l~~~~~~~---~li~Dea~~~~~~~~~~~--~~~~~~-~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~-- 224 (350)
T 3fkd_A 153 RLLNDHPDT---TFVLDQSYVSFTTEEVIR--PADIKG-RKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFST-- 224 (350)
T ss_dssp HHHHHCTTS---EEEEECTTTTSCSSCCCC--GGGGTT-CSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTTCC--
T ss_pred HHHHhCCCC---EEEEECchhhhccCcchh--hHHhhc-CCCEEEEecCchhccCcchheEeEEeCHHHHHHHHHhCC--
Confidence 888877643 999999999987765322 233333 688999999999999999999999999999999887664
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 410 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (470)
.++++.+.|.++..+|+.+. .+.+++++.+ ++++.+.+.|++++|+.+.++. +.|+|++++..
T Consensus 225 ~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~-~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~------------ 287 (350)
T 3fkd_A 225 PWAVNALAIEAAKFILIHPA---QFTLPIRKWQ-RNTVDFITALNRLDGVEVHPSG-TTFFLLRLKKG------------ 287 (350)
T ss_dssp TTCSCHHHHHHHHHHHHCTT---TTCCCHHHHH-HHHHHHHHHHHHSTTEEECCCS-SSEEEEEESSS------------
T ss_pred CCCCCHHHHHHHHHHHhCHH---HHHHHHHHHH-HHHHHHHHHHhcCCCcEECCCC-CcEEEEECCCC------------
Confidence 35689999999999998743 2344444444 7888899999888899886555 55578888753
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012124 411 NSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 411 ~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~~~ 464 (470)
+..++.+.|.+++||.+.||..|+. ++++|++++ ++++++++++.|++++++.
T Consensus 288 ~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~~~~~ 342 (350)
T 3fkd_A 288 TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ-RPAQNQLFIKALETFLEKY 342 (350)
T ss_dssp CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHHHh
Confidence 6788999988756999999999875 679999998 5667788888888777654
No 80
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=100.00 E-value=1.3e-43 Score=352.34 Aligned_cols=360 Identities=16% Similarity=0.126 Sum_probs=282.2
Q ss_pred ccccCCchHHHHHHHHHHHHhcCCCeEEccCCCC---CC--CChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHH
Q 012124 71 VNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---DF--DTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKL 144 (470)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~---~~--~~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l 144 (470)
+...++.....+...... ..++++|+|+.|.+ +. .+++.+.+++.+.+.. ....|++..|..+||+++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~ 82 (394)
T 2ay1_A 5 LKPQAPDKILALMGEFRA--DPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELI 82 (394)
T ss_dssp CCCCCCCSHHHHHHHHHH--CCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHH
T ss_pred CccCCCccHHHHHHHHHh--CCCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHH
Confidence 445556666555443332 24567899999985 32 4468899999888764 4668988899999999999998
Q ss_pred HHHcCCCCCCCcEEE--ecChHHHHHHHHHHhcC--CCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhH
Q 012124 145 KEENGLSYTPDQILV--SNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVL 220 (470)
Q Consensus 145 ~~~~g~~~~~~~i~i--t~g~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l 220 (470)
.. .+ +++++|++ |+|++++++++++.+.. +||+|++++|+|+++...++..|++++.++++.++++.+|++.+
T Consensus 83 ~~-~~--~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l 159 (394)
T 2ay1_A 83 LG-DG--LKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGM 159 (394)
T ss_dssp HG-GG--CCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHH
T ss_pred hC-CC--CCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHH
Confidence 53 22 36789999 99999999999988754 99999999999999999999999999999986545678999999
Q ss_pred hhhccC---CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCC-CcccccccCCCCCceEEE
Q 012124 221 ESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA-THTSFASLPGMWERTLTV 296 (470)
Q Consensus 221 ~~~l~~---~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~-~~~~~~~~~~~~~~~i~i 296 (470)
++++++ +++++++++||||||.++|.+++++|+++|++| |++||+||+|.++.+++. ...++..+....++++++
T Consensus 160 ~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 238 (394)
T 2ay1_A 160 KADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKT-GALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIA 238 (394)
T ss_dssp HHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEE
T ss_pred HHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEecCccccccCcccchHHHHHHhhcCCCEEEE
Confidence 999864 356677799999999999999999999999999 999999999999877531 122333332224678999
Q ss_pred eccCcccccccceeeEEEc---CHHHHHH----HHHHhhhccCCCChHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHH
Q 012124 297 NGFSKAFAMTGWRLGYIAG---PKHFVAA----CNKIQSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMVKAFRER 366 (470)
Q Consensus 297 ~S~sK~~~~~G~r~G~~~~---~~~~~~~----l~~~~~~~~~~~~~~~q~a~~~~l~~~~~---~~~~~~~~~~~~~~~ 366 (470)
+||||.+|++|+|+||+++ ++++++. +.........+++++.|.++.++|+.+.+ ..+++++++++++++
T Consensus 239 ~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 318 (394)
T 2ay1_A 239 ASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRL 318 (394)
T ss_dssp EECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999989999999998 5665444 33333334445689999999999986310 036788999999999
Q ss_pred HHHHHHHhccCC---CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe
Q 012124 367 RDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY 443 (470)
Q Consensus 367 ~~~l~~~L~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~ 443 (470)
++.+.+.|+++. ++.+..+.+|+|+|++++ ...+. .+++++||.+.|| +|+++
T Consensus 319 ~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~---------------~~~~~-~~l~~~gi~v~~~--------~Ris~ 374 (394)
T 2ay1_A 319 REQLAGELRDLSGSDRFGFVAEHRGMFSRLGAT---------------PEQVK-RIKEEFGIYMVGD--------SRINI 374 (394)
T ss_dssp HHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCC---------------HHHHH-HHHHHHCEECCTT--------CEEEG
T ss_pred HHHHHHHHHhcCCCCCeeEEcCCceEEEeeCCC---------------HHHHH-HHHHhCCEEecCC--------CeEEe
Confidence 999999998863 477777888999998763 33444 4455569999885 59999
Q ss_pred ec-CHHHHHHHHHHHHHH
Q 012124 444 AA-SLTTLQAAVERIKKG 460 (470)
Q Consensus 444 ~~-~~~~i~~~l~~l~~~ 460 (470)
+. +++++++++++|+++
T Consensus 375 ~~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 375 AGLNDNTIPILARAIIEV 392 (394)
T ss_dssp GGCCTTTHHHHHHHHHHH
T ss_pred ecCCHhhHHHHHHHHHHc
Confidence 87 889999999999875
No 81
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=100.00 E-value=2.6e-41 Score=328.36 Aligned_cols=314 Identities=21% Similarity=0.333 Sum_probs=259.2
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHH-cCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIR-EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~-~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
++|+|+.|.+++++|+.+++++.+.+. .....|+ ..+..++|+++++++.+. .+++++|++|+|+++++.+++++
T Consensus 20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~-~~~~~~lr~~la~~~~~~---~~~~~~v~~~~G~~~al~~~~~~ 95 (335)
T 1uu1_A 20 DKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYY-DSPDEELIEKILSYLDTD---FLSKNNVSVGNGADEIIYVMMLM 95 (335)
T ss_dssp CSEEESSCCCSSCCCHHHHHHHHHTCCGGGGGSCC-CSSCHHHHHHHHHHHTCS---SCCGGGEEEESSHHHHHHHHHHH
T ss_pred cceECCCCCCCCCCCHHHHHHHHHHhhhhhhhcCC-CCchHHHHHHHHHHcCCC---CCCHHHEEEcCChHHHHHHHHHH
Confidence 569999999988888999999998873 3456784 457999999999998642 35778999999999999999998
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHH
Q 012124 174 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 253 (470)
Q Consensus 174 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~ 253 (470)
+ ||+|+++ |+|+++...++..|++++.+|++ +++.+|++.| +++++|++++||||||.++|.+++++|+
T Consensus 96 ~---gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l-----~~~~~v~l~~p~nptG~~~~~~~l~~l~ 164 (335)
T 1uu1_A 96 F---DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLT--KDLRIPEVNV-----GEGDVVFIPNPNNPTGHVFEREEIERIL 164 (335)
T ss_dssp S---SEEEECS-SSCHHHHHHHHHHTCEEEECCCC--TTSCCCCCCC-----CTTEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred h---CCcEEEC-CCcHHHHHHHHHcCCeEEEeccC--CCCCCCHHHc-----CCCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 8 8999999 99999999999999999999985 3456888877 4789999999999999999977776666
Q ss_pred HHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCC
Q 012124 254 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 333 (470)
Q Consensus 254 ~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~ 333 (470)
++ . | ++|+||+|.++.+. ++..+.+..+++++++||||.+|++|+|+||+++++++++.+...... ++
T Consensus 165 ~~---~-~-~li~De~~~~~~~~-----~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~--~~ 232 (335)
T 1uu1_A 165 KT---G-A-FVALDEAYYEFHGE-----SYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRLP--FN 232 (335)
T ss_dssp HT---T-C-EEEEECTTHHHHCC-----CCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHSCT--TC
T ss_pred Hh---C-C-EEEEECcchhhcch-----hHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCHHHHHHHHHhcCC--CC
Confidence 64 4 7 89999999986542 112211225789999999999998999999999999999988876543 57
Q ss_pred CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHH
Q 012124 334 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 413 (470)
Q Consensus 334 ~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (470)
++.+.|.++.++|+. .+++++.+++++++++.+.+.|+++ |+.+. +.+++|+|++++.. +..
T Consensus 233 ~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~------------~~~ 294 (335)
T 1uu1_A 233 VSYVSQMFAKVALDH----REIFEERTKFIVEERERMKSALREM-GYRIT-DSRGNFVFVFMEKE------------EKE 294 (335)
T ss_dssp SCHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCCSSEEEEECCTH------------HHH
T ss_pred cCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHC-CcEEc-CCCCeEEEEECCCC------------CHH
Confidence 899999999999985 5678889999999999999999887 77665 45567799998752 567
Q ss_pred HHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 012124 414 SLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKG 460 (470)
Q Consensus 414 ~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~ 460 (470)
++.+.|.++ ||.+.|+ ++++|++++. ++++++++++|+++
T Consensus 295 ~~~~~l~~~-gi~v~~~-----~~~iRis~~~-~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 295 RLLEHLRTK-NVAVRSF-----REGVRITIGK-REENDMILRELEVF 334 (335)
T ss_dssp HHHHHHHHH-TEEEEEE-----TTEEEEECCC-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHC-CEEEEEC-----CCeEEEEeCC-HHHHHHHHHHHHhh
Confidence 888888765 9999982 5789999975 56799999988754
No 82
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=100.00 E-value=1.6e-40 Score=330.58 Aligned_cols=337 Identities=18% Similarity=0.193 Sum_probs=277.1
Q ss_pred cCCCeEEccCCCC-CCCChHHHHHHHHHHHHcC---CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 92 AGVSVIRLAAGEP-DFDTPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 92 ~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
+|+++|||+.|.| ++.+++.+.+++.+.+... ...|.+..|..++++++++++.+.+|. +++++|+|+++++
T Consensus 41 ~g~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~----~~v~~~~ggt~a~ 116 (398)
T 3a2b_A 41 DGRRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGK----EAAILFSTGFQSN 116 (398)
T ss_dssp TTEEEEECSCSCTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC----SEEEEESSHHHHH
T ss_pred CCceEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC----CcEEEECCHHHHH
Confidence 3456799999998 6657889999999888652 234556778899999999999988774 5899999999999
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC----CceEEEEcCCCCCcccC
Q 012124 168 LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE----KSRLLILCSPSNPTGSV 243 (470)
Q Consensus 168 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----~~~~i~l~~p~nPtG~~ 243 (470)
..++++++++||.|++++|+|+.+...++..|++++.+|. +|++.|++++++ ++++|++++|+||||.+
T Consensus 117 ~~~~~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~ 189 (398)
T 3a2b_A 117 LGPLSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGH-------NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDI 189 (398)
T ss_dssp HHHHHHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCB
T ss_pred HHHHHHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCC-------CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCc
Confidence 9999999999999999999999999999999999999986 588999999866 78999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCc-eEEEeccCcccccccceeeEEEcCHHHHHH
Q 012124 244 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER-TLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 322 (470)
Q Consensus 244 ~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~-~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~ 322 (470)
++ +++|+++|++| |++||+||+|+.+.++.. ..++....+..++ +++++||||.++++| ||+++++++++.
T Consensus 190 ~~---~~~l~~~~~~~-~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~~~~~~~ 261 (398)
T 3a2b_A 190 VN---LPELTSIANEF-DAAVMVDDAHSLGVIGHK-GAGTASHFGLNDDVDLIMGTFSKSLASLG---GFVAGDADVIDF 261 (398)
T ss_dssp CC---HHHHHHHHHHH-TCEEEEECTTTTTTSSGG-GCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEECHHHHHH
T ss_pred cC---HHHHHHHHHHc-CcEEEEECCCcccccCCC-CCchHhhcCCCcCCeEEEecccccccCCC---cEEEeCHHHHHH
Confidence 98 89999999999 999999999998776422 1223222111345 699999999998667 999999999998
Q ss_pred HHHH-hhhccCCCChHHHH-HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccC
Q 012124 323 CNKI-QSQFTSGASSISQK-AGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 400 (470)
Q Consensus 323 l~~~-~~~~~~~~~~~~q~-a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~ 400 (470)
+... ......+++.+.|. ++..+|+. .++.+++++.++++++.+.+.|+++ |+++..+. |+++|+.++...
T Consensus 262 l~~~~~~~~~~~~~~~~~~a~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-g~~~~~~~~~~~- 334 (398)
T 3a2b_A 262 LKHNARSVMFSASMTPASVASTLKALEI----IQNEPEHIEKLWKNTDYAKAQLLDH-GFDLGATE-SPILPIFIRSNE- 334 (398)
T ss_dssp HHHHCHHHHSSBCCCHHHHHHHHHHHHH----HHHCTHHHHHHHHHHHHHHHHHHHT-TCCBCSCC-SSEEEEECCCHH-
T ss_pred HHHhcccceecCCCCHHHHHHHHHHHHH----HhhCHHHHHHHHHHHHHHHHHHHhc-CCCcCCCC-CCEEEEEcCCHH-
Confidence 8775 33344445666666 45577764 3456788899999999999999988 88877665 577899987532
Q ss_pred CcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 401 SEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
+..++++.|+++ ||.+.||..|.. ++++|++++. +++++++++++|+++++++.
T Consensus 335 ----------~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~~ 393 (398)
T 3a2b_A 335 ----------KTFWVTKMLQDD-GVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQAE 393 (398)
T ss_dssp ----------HHHHHHHHHHHT-TEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred ----------HHHHHHHHHHHC-CcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHhC
Confidence 567888988877 999999988863 4789999996 99999999999999998764
No 83
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=1.4e-38 Score=316.42 Aligned_cols=358 Identities=16% Similarity=0.128 Sum_probs=275.5
Q ss_pred ccccccccchhhh----hhcCCCcccccccCccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCC-CCChHHHHH
Q 012124 40 NFNLNNDRRVLRV----MACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPD-FDTPVLIAE 114 (470)
Q Consensus 40 Ay~~L~~~G~i~s----~~g~sG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~-~~~~~~~~~ 114 (470)
+|+++..+|++.. ..+ +|+||.. +|+++|||+.|+|. +.+++.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~-~g~~v~~----------------------------~g~~~id~~~~~~~g~~~~~~v~~ 64 (399)
T 3tqx_A 14 EIEGLKKAGLYKSERIITSP-QNAEIKV----------------------------GEKEVLNFCANNYLGLADHPALIK 64 (399)
T ss_dssp HHHHHHTTTCCCCCCCBCSC-SSSEEEE----------------------------TTEEEEECSSCCTTSCTTCHHHHH
T ss_pred HHHHHHHcCCccccccccCC-CCceEee----------------------------CCeeEEEeeccCcccccCCHHHHH
Confidence 8999999999866 446 7888732 24467999999763 345788999
Q ss_pred HHHHHHHcCCC-----C--CCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCC
Q 012124 115 AGINAIREGFT-----R--YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPF 187 (470)
Q Consensus 115 a~~~~~~~~~~-----~--y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~ 187 (470)
++.+.+.+... . |+...+..++++.+++++ |. +++|++++| ++++..++.+++++||.|++++|+
T Consensus 65 a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----~~---~~~i~~~sG-t~a~~~~l~~~~~~gd~v~~~~~~ 136 (399)
T 3tqx_A 65 TAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFL----GT---DDTILYSSC-FDANGGLFETLLGPEDAIISDELN 136 (399)
T ss_dssp HHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHH----TC---SEEEEESCH-HHHHHTTHHHHCCTTCEEEEETTC
T ss_pred HHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHH----CC---CcEEEECch-HHHHHHHHHHhcCCCCEEEECCcc
Confidence 99888865211 1 223334577777777775 42 246666665 679999999999999999999999
Q ss_pred CCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC
Q 012124 188 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 261 (470)
Q Consensus 188 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~ 261 (470)
|+.+...++..|++++.++. +|++.|++.+++ ++++|++++|+||||.+++ +++|+++|++| |
T Consensus 137 ~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~ 205 (399)
T 3tqx_A 137 HASIIDGIRLCKAQRYRYKN-------NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD---LKSICDLADKY-N 205 (399)
T ss_dssp CHHHHHHHHSCCSEEEEECT-------TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC---HHHHHHHHHHT-T
T ss_pred cHHHHHHHHHcCCceeEeCC-------CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHc-C
Confidence 99999999999999999986 477888888864 7899999999999999999 88999999999 9
Q ss_pred EEEEEeccccccccCCCCccccccc-CCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhh--ccCCCChHH
Q 012124 262 LLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ--FTSGASSIS 338 (470)
Q Consensus 262 ~~iI~Dd~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~--~~~~~~~~~ 338 (470)
++||+||+|+...++... .++... .-..+.+++++||||.++ |++.||+++++++++.+...... ...+.+++.
T Consensus 206 ~~li~De~~~~~~~~~~~-~~~~~~~~~~~~~di~~~s~sK~~~--g~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (399)
T 3tqx_A 206 ALVMVDDSHAVGFIGENG-RGTPEYCGVADRVDILTGTLGKALG--GASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVI 282 (399)
T ss_dssp CEEEEECTTTTTTSSTTS-CCHHHHHTCTTCCSEEEEESSSSSC--SSCCEEEEECHHHHHHHHHHCHHHHSSCCCCHHH
T ss_pred CEEEEECCccccccCCCC-CchHHhhCCCCCCcEEEecchHhcc--cCceEEEEcCHHHHHHHHHhCcceeccCCCcHHH
Confidence 999999999743333222 222222 111356799999999997 44559999999999998875332 234577777
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHH
Q 012124 339 QKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRY 418 (470)
Q Consensus 339 q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 418 (470)
+.++...++. ..++.+++++.++++++++.+.|+++ |+.+..+.+++ +|+.++... +..++++.
T Consensus 283 ~~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~~~~~~~~~-----------~~~~~~~~ 346 (399)
T 3tqx_A 283 VATSLKVLEL---LKTEGPQLRKQLQENSRYFRAGMEKL-GFQLVPGNHPI-IPVMLGDAQ-----------LATNMADH 346 (399)
T ss_dssp HHHHHHHHHH---HHHTHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSSSE-EEEEEECHH-----------HHHHHHHH
T ss_pred HHHHHHHHHH---HhhccHHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCE-EEEEeCCHH-----------HHHHHHHH
Confidence 7788888775 12668899999999999999999988 88777555554 788887542 56788998
Q ss_pred HHHcCCEEEECCCCCC---CCCcEEEEee--cCHHHHHHHHHHHHHHHHhhC
Q 012124 419 LLDKAQVALVPGDAFG---DDTCIRISYA--ASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 419 L~~~~gI~v~pg~~f~---~~~~iRls~~--~~~~~i~~~l~~l~~~l~~~~ 465 (470)
|.++ ||.+.|+..+. .++++|++++ .+++++++++++|+++++++.
T Consensus 347 l~~~-gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 397 (399)
T 3tqx_A 347 LLQE-GIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKLG 397 (399)
T ss_dssp HHHT-TEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHC-CCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHhc
Confidence 8875 99999875543 2358999998 399999999999999998764
No 84
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=100.00 E-value=3.8e-37 Score=308.10 Aligned_cols=335 Identities=16% Similarity=0.222 Sum_probs=262.9
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcC-------CCCCCC--CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREG-------FTRYTP--NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-------~~~y~~--~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~ 164 (470)
+++++|+.|.++ ..|+.+++++.+.+... ...|++ ..+..++|+.+++++ |.. ++++|++|+|++
T Consensus 27 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~----~~~-~~~~v~~~~g~t 100 (420)
T 1t3i_A 27 HPLVYLDNAATS-QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFI----NAR-SPREIVYTRNAT 100 (420)
T ss_dssp EECEECBTTTCC-CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHT----TCS-CGGGEEEESSHH
T ss_pred CceEEecCCccC-CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHc----CCC-CCCeEEEcCChH
Confidence 347999999998 67889999999988752 233433 366788888888886 321 568999999999
Q ss_pred HHHHHHHHHh----cCCCCeEEEcCCCCCC----hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCC
Q 012124 165 QSILQAVLAV----CSPGDEVIIPAPFWVS----YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSP 236 (470)
Q Consensus 165 ~al~~~~~~l----~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p 236 (470)
+++.+++.++ +++||+|++++|+|++ +...++..|++++.++++ .++.+|++.|++++++++++|++++|
T Consensus 101 ~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~~~~v~~~~~ 178 (420)
T 1t3i_A 101 EAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLD--EQESFDLEHFKTLLSEKTKLVTVVHI 178 (420)
T ss_dssp HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBC--TTSSBCHHHHHHHCCTTEEEEEEESB
T ss_pred HHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccC--CCCCcCHHHHHHhhCCCceEEEEeCC
Confidence 9999999999 8999999999999998 456677889999999986 34568999999999989999999999
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC
Q 012124 237 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 316 (470)
Q Consensus 237 ~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~ 316 (470)
+||||.+++ +++|.++|++| |++||+|++|+.+.. ...+.. .+.++++.|+||.+|.+| +||++++
T Consensus 179 ~nptG~~~~---l~~i~~l~~~~-~~~li~D~a~~~~~~----~~~~~~----~~~di~~~s~sK~~~~~g--~G~~~~~ 244 (420)
T 1t3i_A 179 SNTLGCVNP---AEEIAQLAHQA-GAKVLVDACQSAPHY----PLDVQL----IDCDWLVASGHKMCAPTG--IGFLYGK 244 (420)
T ss_dssp CTTTCBBCC---HHHHHHHHHHT-TCEEEEECTTTTTTS----CCCHHH----HTCSEEEEEGGGTTSCTT--CEEEEEC
T ss_pred cccccCcCC---HHHHHHHHHHc-CCEEEEEhhhccCCc----cCchhh----cCCCEEEEehhhhcCCCc--eEEEEEc
Confidence 999999999 88999999999 999999999986322 112222 245689999999888666 8999999
Q ss_pred HHHHHHHHHHhhh--------------------ccCCCChHHHHHHHH-HHhcCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012124 317 KHFVAACNKIQSQ--------------------FTSGASSISQKAGVA-ALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 375 (470)
Q Consensus 317 ~~~~~~l~~~~~~--------------------~~~~~~~~~q~a~~~-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 375 (470)
+++++.+...... +..+++.+.|.++.. +++.- .+.++++++++++++++++.+.|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~ 322 (420)
T 1t3i_A 245 EEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYL--TDLGMENIHNYEVELTHYLWQGLG 322 (420)
T ss_dssp HHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9988877544321 123466777776554 44420 023467888999999999999999
Q ss_pred cCCCCeecCCC------ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--------CCCCcEEE
Q 012124 376 ELEGVKMSEPQ------GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--------GDDTCIRI 441 (470)
Q Consensus 376 ~~~g~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f--------~~~~~iRl 441 (470)
+++|+++..+. ++++ ++.++.. +..++.+.|. +.||.+.||..| +.++++|+
T Consensus 323 ~~~g~~~~~~~~~~~~~~~~~-~~~~~~~------------~~~~~~~~l~-~~gi~v~~~~~~~~~~~~~~g~~~~iRi 388 (420)
T 1t3i_A 323 QIPQLRLYGPNPKHGDRAALA-SFNVAGL------------HASDVATMVD-QDGIAIRSGHHCTQPLHRLFDASGSARA 388 (420)
T ss_dssp TCTTEEEESCCGGGSCBCSEE-EEEETTB------------CHHHHHHHHH-TTTEECBCSCTTCHHHHHHTTCCCCEEE
T ss_pred hCCCeEEeCCCccccccCCEE-EEEECCC------------CHHHHHHHHH-HCCeEEeeccccchHHHHhcCCCCeEEE
Confidence 98888887664 5554 5567642 6778887665 559999999644 33689999
Q ss_pred Eeec--CHHHHHHHHHHHHHHHHhhCC
Q 012124 442 SYAA--SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 442 s~~~--~~~~i~~~l~~l~~~l~~~~~ 466 (470)
+++. +++++++++++|+++++.++.
T Consensus 389 s~~~~~~~~~i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 389 SLYFYNTKEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9996 899999999999999987754
No 85
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=100.00 E-value=1.1e-36 Score=301.27 Aligned_cols=327 Identities=12% Similarity=0.098 Sum_probs=255.9
Q ss_pred CCCeEEccCCCC-CCCChHHHHHHHHHHHHc-CC----CCC--CCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChH
Q 012124 93 GVSVIRLAAGEP-DFDTPVLIAEAGINAIRE-GF----TRY--TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164 (470)
Q Consensus 93 ~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~-~~----~~y--~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~ 164 (470)
|+.++||+.|.+ ++.+++.+.+++.+.+.. +. ..| +...+..++|+++++++ |. ++.|++++| +
T Consensus 38 g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~---~~~i~~~sG-t 109 (384)
T 1bs0_A 38 DRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL----GY---SRALLFISG-F 109 (384)
T ss_dssp TEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH----TC---SEEEEESCH-H
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHh----CC---CcEEEeCCc-H
Confidence 446799999985 555678899999988865 21 223 44567888999998886 43 245555555 8
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC---CceEEEEcCCCCCcc
Q 012124 165 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTG 241 (470)
Q Consensus 165 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~i~l~~p~nPtG 241 (470)
+++..++++++++||.|++++|+|+.+...++..|++++.+|. +|++.|++.+++ +++++++++||||||
T Consensus 110 ~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~v~~~~~~nptG 182 (384)
T 1bs0_A 110 AANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVTEGVFSMDG 182 (384)
T ss_dssp HHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEEESBCTTTC
T ss_pred HHHHHHHHHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCC-------CCHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 9999999999999999999999999999999999999999884 488999998864 367888899999999
Q ss_pred cCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHH
Q 012124 242 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 321 (470)
Q Consensus 242 ~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~ 321 (470)
.+++ +++|+++|++| |++||+||+|+.+.++.........+. .+..++++||||.++++| ||+++++++++
T Consensus 183 ~~~~---l~~i~~l~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~--~~~di~~~s~sK~~~~~G---G~~~~~~~~~~ 253 (384)
T 1bs0_A 183 DSAP---LAEIQQVTQQH-NGWLMVDDAHGTGVIGEQGRGSCWLQK--VKPELLVVTFGKGFGVSG---AAVLCSSTVAD 253 (384)
T ss_dssp CBCC---HHHHHHHHHHT-TCEEEEECTTTTTTSSGGGCCHHHHTT--CCCSEEEEESSSTTSSCC---EEEEECHHHHH
T ss_pred CccC---HHHHHHHHHHc-CcEEEEECCcccceecCCCCchHHhcC--CCCcEEEeeccchhhccC---cEEEeCHHHHH
Confidence 9999 88999999999 999999999987655311111112222 134499999999998666 99999999999
Q ss_pred HHHHHhhh--ccCCCChHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCc
Q 012124 322 ACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTY 398 (470)
Q Consensus 322 ~l~~~~~~--~~~~~~~~~q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~ 398 (470)
.+...... .+.+.+++.+.++.++++. ..+ +.++.+++++++++++.+.|+++ |+++.+ ..+.++|++++..
T Consensus 254 ~l~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~ 328 (384)
T 1bs0_A 254 YLLQFARHLIYSTSMPPAQAQALRASLAV---IRSDEGDARREKLAALITRFRAGVQDL-PFTLAD-SCSAIQPLIVGDN 328 (384)
T ss_dssp HHHHHCHHHHSSBCCCHHHHHHHHHHHHH---HHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEECS-CCSSBCCEEEESH
T ss_pred HHHHhchhhhcCCCCCHHHHHHHHHHHHH---HhccccHHHHHHHHHHHHHHHHHHHhc-CCcccC-CCCCEEEEEeCCH
Confidence 88765322 2335788888888888874 122 67788999999999999999988 787764 4455678888743
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHH
Q 012124 399 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKG 460 (470)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~--~~~~i~~~l~~l~~~ 460 (470)
. +..++.+.|.++ ||.+.||..|+. .+++|++++. +++++++++++|+++
T Consensus 329 ~-----------~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 329 S-----------RALQLAEKLRQQ-GCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp H-----------HHHHHHHHHHHT-TEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred H-----------HHHHHHHHHHHC-CcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 2 567888888876 999999987753 3689999986 899999999999864
No 86
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.2e-36 Score=299.18 Aligned_cols=321 Identities=14% Similarity=0.159 Sum_probs=261.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCC
Q 012124 107 DTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p 186 (470)
..++.+.+++.+.+. ..|++ ...++++.+++++.+.+|.+ ++++|++|+|+++++..++.+++++||+|++++|
T Consensus 30 ~~~~~v~~a~~~~~~---~~~~~--~~~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~ 103 (386)
T 2dr1_A 30 ACFPEVLEIMKVQMF---SHRSK--EYRKVHMDTVERLREFLEVE-KGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTII 103 (386)
T ss_dssp CCCHHHHHHTTSCCC---CTTSH--HHHHHHHHHHHHHHHHHTCS-SSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEES
T ss_pred CCcHHHHHHHhcccc---cccCH--HHHHHHHHHHHHHHHHhCCC-CCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEcC
Confidence 346777777665432 25533 24789999999999988975 4678999999999999999999999999999999
Q ss_pred CCCC--hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhc--cCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCE
Q 012124 187 FWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKL--TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 262 (470)
Q Consensus 187 ~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l--~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~ 262 (470)
+|++ +...++..|++++.++++. ++.+|++.|++++ .+++++|++++|+||||.+++ +++|+++|++| |+
T Consensus 104 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~ 177 (386)
T 2dr1_A 104 GAFGKRYKEVVESNGRKAVVLEYEP--GKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNP---LPELAKVAKEH-DK 177 (386)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC---HHHHHHHHHHT-TC
T ss_pred CchhHHHHHHHHHhCCceEEEecCC--CCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCC---HHHHHHHHHHc-CC
Confidence 9998 8888899999999999864 4568999999999 568999999999999999998 89999999999 99
Q ss_pred EEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHH----------------HH
Q 012124 263 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN----------------KI 326 (470)
Q Consensus 263 ~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~----------------~~ 326 (470)
+||+|++|+.+.+. .+ +.. .+.++++.||||.++.+ .++||+++++++++.+. ..
T Consensus 178 ~li~D~a~~~~~~~----~~---~~~-~~~di~~~s~sK~~~~~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (386)
T 2dr1_A 178 LVFVDAVSAMGGAD----IK---FDK-WGLDVVFSSSQKAFGVP-PGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYL 248 (386)
T ss_dssp EEEEECTTTBTTBC----CC---TTT-TTCSEEEEETTSTTCCC-SSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHH
T ss_pred eEEEEccccccCcc----cc---ccc-cCCcEEEEeccccccCC-CceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhh
Confidence 99999999875431 12 222 35679999999999744 34999999999888762 22
Q ss_pred --hhhccCCCChHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHHHHHHhccCCCCeecCCC---ceEEEeeeccCcc
Q 012124 327 --QSQFTSGASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---GAFYLFIDFSTYY 399 (470)
Q Consensus 327 --~~~~~~~~~~~~q~a~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---~g~~~~~~~~~~~ 399 (470)
.....++++.+.|.++..+|+. ..+ .+++++++++++++++.+.|+++ |+++..+. .+.++|+.++...
T Consensus 249 ~~~~~~~~~~~~~~~~a~~~~l~~---~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 324 (386)
T 2dr1_A 249 KEKESTPSTPPMPQVFGINVALRI---IEKMGGKEKWLEMYEKRAKMVREGVREI-GLDILAEPGHESPTITAVLTPPGI 324 (386)
T ss_dssp HHHSSCSSCCCHHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCTTCBCSSEEEEECCTTC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCeeCcCccccCCceEEEEcCCCC
Confidence 1244556888899998888875 233 37788999999999999999988 88877664 3667888887432
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 400 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
+..+++++|.++ ||.+.||..+..++++|++++. +++++++++++|+++++++
T Consensus 325 -----------~~~~~~~~l~~~-gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 379 (386)
T 2dr1_A 325 -----------KGDEVYEAMRKR-GFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINEL 379 (386)
T ss_dssp -----------CHHHHHHHHHHT-TEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHC-CeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 678899998877 9999999876667899999994 9999999999999998865
No 87
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=100.00 E-value=4.8e-36 Score=298.65 Aligned_cols=333 Identities=16% Similarity=0.210 Sum_probs=260.9
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCC---CCC------CCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGF---TRY------TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~---~~y------~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~ 164 (470)
++++.|..+.++ +.|+.+.+++.+.+.... ..| .+..+..++|+++++++ |.. ++++|++|+|++
T Consensus 22 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~~-~~~~v~~~~g~t 95 (406)
T 1kmj_A 22 LPLAYLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFI----NAR-SAEELVFVRGTT 95 (406)
T ss_dssp EECEECCTTTCC-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHT----TCS-CGGGEEEESSHH
T ss_pred CceEEecCCccC-CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHc----CCC-CCCeEEEeCChh
Confidence 457999999987 567889999999887532 111 23456778888888875 321 568999999999
Q ss_pred HHHHHHHHHh----cCCCCeEEEcCCCCCChH----HHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCC
Q 012124 165 QSILQAVLAV----CSPGDEVIIPAPFWVSYP----EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSP 236 (470)
Q Consensus 165 ~al~~~~~~l----~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p 236 (470)
+++.++++++ +++||+|++++|+|++.. ..++..|++++.++++. ++.+|++.|++++++++++|++++|
T Consensus 96 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~l~~~~~~v~~~~~ 173 (406)
T 1kmj_A 96 EGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNP--DGTLQLETLPTLFDEKTRLLAITHV 173 (406)
T ss_dssp HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCT--TSCBCGGGHHHHCCTTEEEEEEESB
T ss_pred HHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCC--CCCcCHHHHHHHhccCCeEEEEeCC
Confidence 9999999999 899999999999998754 34677899999999864 4568999999999989999999999
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC
Q 012124 237 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 316 (470)
Q Consensus 237 ~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~ 316 (470)
+||||.+++ +++|.++|++| |++||+|++|+.... ...+.. .+.++++.||||.+|.+| +||++++
T Consensus 174 ~nptG~~~~---l~~i~~l~~~~-~~~li~D~~~~~g~~----~~~~~~----~~~d~~~~s~~K~~g~~G--~G~~~~~ 239 (406)
T 1kmj_A 174 SNVLGTENP---LAEMITLAHQH-GAKVLVDGAQAVMHH----PVDVQA----LDCDFYVFSGHKLYGPTG--IGILYVK 239 (406)
T ss_dssp CTTTCCBCC---HHHHHHHHHHT-TCEEEEECTTTTTTS----CCCHHH----HTCSEEEEEGGGTTSCTT--CEEEEEC
T ss_pred CccccCcCC---HHHHHHHHHHc-CCEEEEEchhhcCCC----CCcccc----cCCCEEEEEchhccCCCC--cEEEEEe
Confidence 999999999 89999999999 999999999986321 112211 246799999999998777 8999999
Q ss_pred HHHHHHHHHHhh---------------------hccCCCChHHHHHHH-HHHhcCCCChHHHHHHHHHHHHHHHHHHHHh
Q 012124 317 KHFVAACNKIQS---------------------QFTSGASSISQKAGV-AALGLGYAGGEVVSKMVKAFRERRDFLVKSF 374 (470)
Q Consensus 317 ~~~~~~l~~~~~---------------------~~~~~~~~~~q~a~~-~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L 374 (470)
+++++.+..... .+..+++.+.|.++. ++++.- .+.++++++++++++++++.+.|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L 317 (406)
T 1kmj_A 240 EALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYV--SALGLNNIAEYEQNLMHYALSQL 317 (406)
T ss_dssp HHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHH--HHcCHHHHHHHHHHHHHHHHHHH
Confidence 998887754331 122345667776655 455431 02356788889999999999999
Q ss_pred ccCCCCeecCC--CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--------CCCCcEEEEee
Q 012124 375 GELEGVKMSEP--QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--------GDDTCIRISYA 444 (470)
Q Consensus 375 ~~~~g~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f--------~~~~~iRls~~ 444 (470)
++++|+++..+ .++++.| .+++. +..++.+.|.++ ||.+.||..| +.++++|++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~-~~~~~------------~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~g~~~~iRis~~ 383 (406)
T 1kmj_A 318 ESVPDLTLYGPQNRLGVIAF-NLGKH------------HAYDVGSFLDNY-GIAVRTGHHCAMPLMAYYNVPAMCRASLA 383 (406)
T ss_dssp TTSTTEEEESCTTCCSEEEE-EETTC------------CHHHHHHHHHHT-TEECEEECTTCHHHHHHTTCSCEEEEECC
T ss_pred hcCCCeEEecCCCcCCEEEE-EECCC------------CHHHHHHHHhhC-CcEEEeccccchHHHHhcCCCCeEEEEee
Confidence 99888988877 6777655 66532 677888777554 9999998753 34689999999
Q ss_pred c--CHHHHHHHHHHHHHHHHhh
Q 012124 445 A--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 445 ~--~~~~i~~~l~~l~~~l~~~ 464 (470)
. ++++++++++.|+++++.+
T Consensus 384 ~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 384 MYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhh
Confidence 7 8999999999999998765
No 88
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=100.00 E-value=5.7e-36 Score=300.47 Aligned_cols=334 Identities=16% Similarity=0.166 Sum_probs=258.2
Q ss_pred CCCeEEccCCCC-CCCChHHHHHHHHHHHHc-C--CCCCCCCcCc----HHHHHHHHHHHHHHcCCCCCCCcEEEecChH
Q 012124 93 GVSVIRLAAGEP-DFDTPVLIAEAGINAIRE-G--FTRYTPNAGT----LELRSAICHKLKEENGLSYTPDQILVSNGAK 164 (470)
Q Consensus 93 ~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~-~--~~~y~~~~g~----~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~ 164 (470)
|+++|||+.|++ ++.+++.+.+++.+++.. + ...|....|. .+|++.+++++ |. ++.+++++++
T Consensus 63 g~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~----g~----~~~i~~~sGs 134 (427)
T 2w8t_A 63 GKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFY----GT----TGAIVFSTGY 134 (427)
T ss_dssp TEEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHH----TC----SEEEEESCHH
T ss_pred CceEEEEECcccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHh----CC----CceEEecCcH
Confidence 557899999985 445678899999988865 3 2233334454 55666666654 53 2455555666
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC----CceEEEEcCCCCCc
Q 012124 165 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE----KSRLLILCSPSNPT 240 (470)
Q Consensus 165 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----~~~~i~l~~p~nPt 240 (470)
+++..++.+++++||.|+++.|+|.++...++..|++++.++. +|++.|++++++ ++++|++++++|||
T Consensus 135 ~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~~~~~~n~t 207 (427)
T 2w8t_A 135 MANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRH-------NSVEDLDKRLGRLPKEPAKLVVLEGVYSML 207 (427)
T ss_dssp HHHHHHHHHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEESEETTT
T ss_pred HHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeCC-------CCHHHHHHHHHhccCCCCeEEEEcCCCCCC
Confidence 7898899999999999999999999999999999999998874 589999998865 78899999999999
Q ss_pred ccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccc-cCCCCCceEEEeccCcccccccceeeEEEcCHHH
Q 012124 241 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS-LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 319 (470)
Q Consensus 241 G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~-~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~ 319 (470)
|.+++ +++|.++|++| |++||+||+|+.+.++.... .+.. ++-..+.+++++||||.+|++| ||+++++++
T Consensus 208 G~~~~---l~~l~~l~~~~-g~~li~Dea~~~~~~~~~g~-~~~~~~~~~~~~di~~~s~sK~~g~~g---G~v~~~~~l 279 (427)
T 2w8t_A 208 GDIAP---LKEMVAVAKKH-GAMVLVDEAHSMGFFGPNGR-GVYEAQGLEGQIDFVVGTFSKSVGTVG---GFVVSNHPK 279 (427)
T ss_dssp TEECC---HHHHHHHHHHT-TCEEEEECTTTTTTSSTTSC-CHHHHTTCTTCCSEEEEESSSTTCSCC---EEEEECCTT
T ss_pred CCccC---HHHHHHHHHHc-CCEEEEECCccccccCCCCC-chHhhcCCCcCCcEEEecchhhhccCC---CEEEeCHHH
Confidence 99999 88999999999 99999999999987753222 2222 2212356899999999998666 999999988
Q ss_pred HHHHHHHh--hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec-CCCceEEEeeecc
Q 012124 320 VAACNKIQ--SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFS 396 (470)
Q Consensus 320 ~~~l~~~~--~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~g~~~~~~~~ 396 (470)
++.+.... ...+.+.+++.+.++.++|+. .+..+++++.++++++++.+.|+++ |+.+. .+..+.++|+.++
T Consensus 280 ~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~ 354 (427)
T 2w8t_A 280 FEAVRLACRPYIFTASLPPSVVATATTSIRK----LMTAHEKRERLWSNARALHGGLKAM-GFRLGTETCDSAIVAVMLE 354 (427)
T ss_dssp GGGGGGTCHHHHSSCCCCHHHHHHHHHHHHH----HTSCHHHHHHHHHHHHHHHHHHHHH-TCEESCSSCCSSEEEEEES
T ss_pred HHHHHHhcccccccCCCCHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHc-CCcccCCCCCCCEEEEEEC
Confidence 88776542 123445677777666677764 2225678888999999999999888 88876 4414556888887
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC---CcEEEEeec--CHHHHHHHHHHHHHHHHhhCC
Q 012124 397 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD---TCIRISYAA--SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~---~~iRls~~~--~~~~i~~~l~~l~~~l~~~~~ 466 (470)
+.. +..++++.|.++ ||.+.|+..|+.+ +++|++++. +++++++++++|+++++++..
T Consensus 355 ~~~-----------~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~~~ 417 (427)
T 2w8t_A 355 DQE-----------QAAMMWQALLDG-GLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGV 417 (427)
T ss_dssp SHH-----------HHHHHHHHHHHT-TEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CHH-----------HHHHHHHHHHHC-CeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 532 467888888877 9999999877643 589999996 999999999999999987653
No 89
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=100.00 E-value=9.5e-36 Score=296.37 Aligned_cols=332 Identities=17% Similarity=0.158 Sum_probs=260.5
Q ss_pred cCCCeEEccCCCCCC-CChHHHHHHHHHHHHc-CCC----CCC--CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecCh
Q 012124 92 AGVSVIRLAAGEPDF-DTPVLIAEAGINAIRE-GFT----RYT--PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 163 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~-~~~~~~~~a~~~~~~~-~~~----~y~--~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~ 163 (470)
+|+.+|||+.|.|.- .+++.+.+++.+.+.. +.. .|. ...+..+||+++++++ |. + ++|++++|
T Consensus 43 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~--~-~~i~~~sG- 114 (401)
T 1fc4_A 43 DGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL----GM--E-DAILYSSC- 114 (401)
T ss_dssp TSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH----TC--S-EEEEESCH-
T ss_pred CCccEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHh----CC--C-cEEEeCCh-
Confidence 456789999997632 1478899999988865 221 121 2456788999999886 43 3 56666665
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------CceEEEEcCCC
Q 012124 164 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPS 237 (470)
Q Consensus 164 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~~p~ 237 (470)
++++..++++++++||.|++++|+|+.+...++..|++++.++. +|++.|++.+++ ++++|++++||
T Consensus 115 s~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~ 187 (401)
T 1fc4_A 115 FDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHVLIATDGVF 187 (401)
T ss_dssp HHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSEEEEEESEE
T ss_pred HHHHHHHHHHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECC-------CCHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 66888899999999999999999999888889999999998873 488999988864 78999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCEEEEEecccc-cccc-CCCCcccccccCCCCCceEEEeccCccc-ccccceeeEEE
Q 012124 238 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIY-APATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIA 314 (470)
Q Consensus 238 nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~-~~~~-~~~~~~~~~~~~~~~~~~i~i~S~sK~~-~~~G~r~G~~~ 314 (470)
||||.+++ +++|.++|+++ |++||+||+|+ ++.+ .+....+...+. .+.+++++||||.+ +.+| ||++
T Consensus 188 nptG~~~~---~~~i~~l~~~~-~~~li~De~~~~g~~~~~g~~~~~~~~~~--~~~di~~~s~sK~~~~~~g---G~~~ 258 (401)
T 1fc4_A 188 SMDGVIAN---LKGVCDLADKY-DALVMVDDSHAVGFVGENGRGSHEYCDVM--GRVDIITGTLGKALGGASG---GYTA 258 (401)
T ss_dssp TTTTEECC---HHHHHHHHHHT-TEEEEEECTTTTTTSSTTSCCHHHHTTCT--TCCSEEEEESSSTTCSSSC---EEEE
T ss_pred CCCCCCCC---HHHHHHHHHHc-CCEEEEECcccccccCCCCCccHHHcCCC--cCCcEEEecchhhccCCCC---EEEE
Confidence 99999999 89999999999 99999999996 7653 333222223333 25679999999999 5443 9999
Q ss_pred cCHHHHHHHHHHhhh--ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEe
Q 012124 315 GPKHFVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 392 (470)
Q Consensus 315 ~~~~~~~~l~~~~~~--~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~ 392 (470)
+++++++.+...... .+.+.+++.|.++.++++. ....++.+++++++++++.+.|+++ |+++. +..+.++|
T Consensus 259 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~ 332 (401)
T 1fc4_A 259 ARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEM----VEAGSELRDRLWANARQFREQMSAA-GFTLA-GADHAIIP 332 (401)
T ss_dssp ECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHHHHT-TCCBC-CSSSSEEE
T ss_pred cCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHc-CCccc-CCCCCEEE
Confidence 999999988775422 3557899999999888874 1224677888899999999999988 78776 45666689
Q ss_pred eeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 393 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
+++++.. +..++.+.|.++ ||.+.||..|+. .+++|++++. +++++++++++|++++++++
T Consensus 333 ~~~~~~~-----------~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 398 (401)
T 1fc4_A 333 VMLGDAV-----------VAQKFARELQKE-GIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLG 398 (401)
T ss_dssp EEEECHH-----------HHHHHHHHHHHT-TEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred EEcCChH-----------HHHHHHHHHHHC-CcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 9987532 567888888776 999999987764 3589999984 89999999999999998765
No 90
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=100.00 E-value=1.5e-36 Score=301.18 Aligned_cols=320 Identities=14% Similarity=0.154 Sum_probs=258.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCeEEEcC
Q 012124 107 DTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPA 185 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~-~i~it~g~~~al~~~~~~l~~~gd~Vlv~~ 185 (470)
..++.+.+++.+.+.. .|++ ...++++++++++.+.+|. +++ +|++|+|+++++..++.+++++||+|++++
T Consensus 44 ~~~~~v~~a~~~~~~~---~~~~--~~~~~~~~~~~~la~~~g~--~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~ 116 (393)
T 1vjo_A 44 NAHPSVLQAMNVSPVG---HLDP--AFLALMDEIQSLLRYVWQT--ENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGV 116 (393)
T ss_dssp CCCHHHHHHHSSCCCC---TTSH--HHHHHHHHHHHHHHHHHTC--CCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCHHHHHHHhccccc---ccCH--HHHHHHHHHHHHHHHHhCC--CCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEc
Confidence 4577788777665432 4633 2568999999999988885 567 899999999999999999999999999999
Q ss_pred CCCCC--hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCE
Q 012124 186 PFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 262 (470)
Q Consensus 186 p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~ 262 (470)
|+|++ +...++..|++++.++++. ++.+|++.|++++++ ++++|++++|+||||.+++ +++|+++|+++ |+
T Consensus 117 ~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~ 190 (393)
T 1vjo_A 117 AGYFGNRLVDMAGRYGADVRTISKPW--GEVFSLEELRTALETHRPAILALVHAETSTGARQP---LEGVGELCREF-GT 190 (393)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHH-TC
T ss_pred CChhHHHHHHHHHHcCCceEEEecCC--CCCCCHHHHHHHHhhCCceEEEEeccCCCcceecc---HHHHHHHHHHc-CC
Confidence 99999 8888999999999999864 355899999999987 8999999999999999998 78999999999 99
Q ss_pred EEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHH----h-----------
Q 012124 263 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI----Q----------- 327 (470)
Q Consensus 263 ~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~----~----------- 327 (470)
+||+||+|.. + ..... +.. .+.++++.|+||.++.++ |+||+++++++++.+... .
T Consensus 191 ~li~Dea~~~---g-~~~~~---~~~-~~~di~~~s~sK~l~~~~-~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (393)
T 1vjo_A 191 LLLVDTVTSL---G-GVPIF---LDA-WGVDLAYSCSQKGLGCSP-GASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGK 261 (393)
T ss_dssp EEEEECTTTT---T-TSCCC---TTT-TTCSEEECCSSSTTCSCS-SCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHH
T ss_pred EEEEECCccc---c-CcCCc---ccc-cCccEEEEcCcccccCCC-ceEEEEECHHHHHHHhccCCCCCceecCcHhhhh
Confidence 9999999982 2 11112 222 356799999999997666 999999999988877432 0
Q ss_pred ----hhccC-CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc---eEEEeeeccCcc
Q 012124 328 ----SQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG---AFYLFIDFSTYY 399 (470)
Q Consensus 328 ----~~~~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~---g~~~~~~~~~~~ 399 (470)
..... +++.+.|.++..+++.. .+.++++++++++++++++.+.|+++ |+++..+.+ +.++++.+|...
T Consensus 262 ~~~~~~~~~g~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 338 (393)
T 1vjo_A 262 YWGSERVYHHTAPINLYYALREALRLI--AQEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTLTTVCIPDGV 338 (393)
T ss_dssp HHSTTCCCCSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCTTC
T ss_pred hhccCCCCCCCCCHHHHHHHHHHHHHH--HHccHHHHHHHHHHHHHHHHHHHHHc-CCcccCCccccCCcEEEEEcCCCC
Confidence 01223 67888999988888751 13457889999999999999999988 888876654 345777776432
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe-e--cCHHHHHHHHHHHHHHHH
Q 012124 400 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY-A--ASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~-~--~~~~~i~~~l~~l~~~l~ 462 (470)
+..++++.|.+++||.+.||..|..++++|+++ + .+++++++++++|+++++
T Consensus 339 -----------~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l~ 393 (393)
T 1vjo_A 339 -----------DGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 393 (393)
T ss_dssp -----------CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred -----------CHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHhC
Confidence 678899988876699999999887789999995 3 377789999999998763
No 91
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=100.00 E-value=3.5e-36 Score=297.34 Aligned_cols=330 Identities=18% Similarity=0.173 Sum_probs=252.5
Q ss_pred EEccCCCCCCCChHHHHHHHHHHHHcCCC--------CCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 97 IRLAAGEPDFDTPVLIAEAGINAIREGFT--------RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 97 i~l~~g~~~~~~~~~~~~a~~~~~~~~~~--------~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+.|..+... .+|+.+++++.+.+.+... .|....+..++++++++++ | +++++|++|+|+++++.
T Consensus 3 ~yld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~a~~ 75 (384)
T 1eg5_A 3 VYFDNNATT-RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVL----G--VSPSEIFFTSCATESIN 75 (384)
T ss_dssp EECBTTTCC-CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHH----T--SCGGGEEEESCHHHHHH
T ss_pred EEEecCccC-CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHc----C--CCCCeEEEECCHHHHHH
Confidence 456666555 5688999999998875210 0222345678888888886 4 46789999999999999
Q ss_pred HHHHHhc----CCCCeEEEcCCCCCChHHHH---HHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcc
Q 012124 169 QAVLAVC----SPGDEVIIPAPFWVSYPEMA---RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG 241 (470)
Q Consensus 169 ~~~~~l~----~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG 241 (470)
++++++. ++||+|++++|+|+++...+ +..|++++.++++. ++.+|++.|++++++++++|++++|+||||
T Consensus 76 ~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~nptG 153 (384)
T 1eg5_A 76 WILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS--RGVVKLEELEKLVDEDTFLVSIMAANNEVG 153 (384)
T ss_dssp HHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT--TSCBCHHHHHHHCCTTEEEEEEESBCTTTC
T ss_pred HHHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCC--CCccCHHHHHHHhCCCCeEEEEECCCCCcc
Confidence 9999997 79999999999999887655 77899999999864 456899999999988999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhCCC--EEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHH
Q 012124 242 SVYPKNLLDEIARIVAKHPR--LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 319 (470)
Q Consensus 242 ~~~s~~~~~~l~~~~~~~~~--~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~ 319 (470)
.+++ +++|.++|+++ | ++||+||+|+. +. ...+ +.. .+.++++.|+||.+|++| +||+++++++
T Consensus 154 ~~~~---~~~i~~l~~~~-~~~~~li~Dea~~~---~~-~~~~---~~~-~~~di~~~s~sK~~g~~G--~G~~~~~~~~ 219 (384)
T 1eg5_A 154 TIQP---VEDVTRIVKKK-NKETLVHVDAVQTI---GK-IPFS---LEK-LEVDYASFSAHKFHGPKG--VGITYIRKGV 219 (384)
T ss_dssp BBCC---HHHHHHHHHHH-CTTCEEEEECTTTT---TT-SCCC---CTT-TCCSEEEEEGGGGTSCTT--CEEEEECTTS
T ss_pred cccC---HHHHHHHHHhc-CCceEEEEEhhhhc---CC-cccC---chh-cCCCEEEecHHHhcCCCc--eEEEEEcCCC
Confidence 9999 78899999999 9 99999999972 22 1112 222 256799999999998778 7999998875
Q ss_pred --HHHHHHH---hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc---eEEE
Q 012124 320 --VAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG---AFYL 391 (470)
Q Consensus 320 --~~~l~~~---~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~---g~~~ 391 (470)
...+... .....++.+.+.|.++..+|+. ..++++++++.++++++.+.+.|++ +|+++..+.. +.++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~ 295 (384)
T 1eg5_A 220 PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEI---AVEELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEISLPNTL 295 (384)
T ss_dssp CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHH---HHHTHHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTSBCTTEE
T ss_pred ccccccccCcccccccCCCCChHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCcccCCCCEE
Confidence 2222110 1123456889999998888875 2467888999999999999999988 5888765531 2346
Q ss_pred eeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEeec--CHHHH
Q 012124 392 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISYAA--SLTTL 450 (470)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-------------------~~~iRls~~~--~~~~i 450 (470)
++.+++. +..++.+.|.+ +||.+.+|..|+. ++++||+++. +++++
T Consensus 296 ~~~~~~~------------~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i 362 (384)
T 1eg5_A 296 SVSFPNI------------RGSTLQNLLSG-YGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEV 362 (384)
T ss_dssp EEECTTC------------CHHHHHHHHHH-TTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHH
T ss_pred EEEeCCC------------CHHHHHHHHhh-CCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHH
Confidence 6666642 67788888765 5999999987743 3689999994 89999
Q ss_pred HHHHHHHHHHHHhhCC
Q 012124 451 QAAVERIKKGLLTLRP 466 (470)
Q Consensus 451 ~~~l~~l~~~l~~~~~ 466 (470)
++++++|++++++++.
T Consensus 363 ~~~~~~l~~~~~~~~~ 378 (384)
T 1eg5_A 363 DYFLKKIEEILSFLDL 378 (384)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988765
No 92
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=100.00 E-value=8.7e-36 Score=296.55 Aligned_cols=316 Identities=16% Similarity=0.172 Sum_probs=239.9
Q ss_pred EEccCCCCCCCChHHHHHHHHHHHH-----cCCCCCCCCcCcH---HHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 97 IRLAAGEPDFDTPVLIAEAGINAIR-----EGFTRYTPNAGTL---ELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 97 i~l~~g~~~~~~~~~~~~a~~~~~~-----~~~~~y~~~~g~~---~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
..++.++|++.+++.+.+++.+.+. .....|+. .|.+ +|++++++++ |. +++++++|+++++.
T Consensus 21 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~l~~~ia~~~----g~----~~~i~~~~g~~ai~ 91 (404)
T 1e5e_A 21 QFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTR-LGNPTVSNLEGKIAFLE----KT----EACVATSSGMGAIA 91 (404)
T ss_dssp TTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTT-TCCHHHHHHHHHHHHHH----TC----SEEEEESSHHHHHH
T ss_pred CCCCcCCCCcCCCccccCCHHHHHHhhcCCcCCccccC-CcChHHHHHHHHHHHHh----CC----CcEEEeCChHHHHH
Confidence 4688999999887666665555543 23466855 6666 8899999886 32 37888888899999
Q ss_pred HHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCC
Q 012124 169 QAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 244 (470)
Q Consensus 169 ~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~ 244 (470)
.++.+++++||+|++++|+|+++.. .++..|++++.++.+ |++.|++++++++++|++++|+||||.++
T Consensus 92 ~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~~t~~v~l~~p~NptG~v~ 164 (404)
T 1e5e_A 92 ATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-------IPGEVKKHMKPNTKIVYFETPANPTLKII 164 (404)
T ss_dssp HHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-------STTHHHHHCCTTEEEEEEESSCTTTCCCC
T ss_pred HHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-------CHHHHHHhcCCCCcEEEEECCCCCCCccc
Confidence 9999999999999999999999888 788899999999873 78899999998999999999999999999
Q ss_pred CHHHHHHHHHHHHh-CCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccccee-eEEEcCHHHHH-
Q 012124 245 PKNLLDEIARIVAK-HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVA- 321 (470)
Q Consensus 245 s~~~~~~l~~~~~~-~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~-G~~~~~~~~~~- 321 (470)
+ +++|+++|++ + |++||+|++|..+.+.. ++ . .++++++.|+||.++++|+|+ ||+++++++++
T Consensus 165 ~---l~~i~~la~~~~-~~~li~De~~~~~~~~~----~~-~----~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~ 231 (404)
T 1e5e_A 165 D---MERVCKDAHSQE-GVLVIADNTFCSPMITN----PV-D----FGVDVVVHSATKYINGHTDVVAGLICGKADLLQQ 231 (404)
T ss_dssp C---HHHHHHHHHTST-TCEEEEECTTTCTTTCC----GG-G----GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHH
T ss_pred C---HHHHHHHHHhhc-CCEEEEECCCchhhhCC----cc-c----cCCEEEEEcCccccCCCCCCeEEEEEECHHHHHH
Confidence 8 8999999999 9 99999999999876531 22 1 357799999999998899998 99999999888
Q ss_pred HHHHHhhhc-cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc--------------CCCCeecCCC
Q 012124 322 ACNKIQSQF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE--------------LEGVKMSEPQ 386 (470)
Q Consensus 322 ~l~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--------------~~g~~~~~~~ 386 (470)
.+......+ ..+.+++.|.++...++. ....+++. .++.+.+.+.|++ +||+++..++
T Consensus 232 ~l~~~~~~~~g~~~~~~~~~~~~~~l~~---~~~~~~~~----~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~ 304 (404)
T 1e5e_A 232 IRMVGIKDITGSVISPHDAWLITRGLST---LNIRMKAE----SENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQ 304 (404)
T ss_dssp HHHTCCCCCCCCCCCHHHHHHHHHHHTT---HHHHHHHH----HHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhHhH---HHHHHHHH----HHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhh
Confidence 777766555 566889999988888874 12223222 2333333333332 3445444443
Q ss_pred ----ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---------------------------
Q 012124 387 ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--------------------------- 435 (470)
Q Consensus 387 ----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--------------------------- 435 (470)
++|+.| ++++ ..+.+.+++++.|| +.+|..|+.
T Consensus 305 ~~~~g~~~~~-~~~~--------------~~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~ 368 (404)
T 1e5e_A 305 MRMYGSMITF-ILKS--------------GFEGAKKLLDNLKL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGIT 368 (404)
T ss_dssp CSSCCSEEEE-EETT--------------HHHHHHHHHHTCSS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCC
T ss_pred CCCCceEEEE-EeCC--------------CHHHHHHHHHhCCC-ceeccCCCCcceeeecccccccccCCHHHHHhcCCC
Confidence 778777 7753 22334456677788 666655542
Q ss_pred CCcEEEEeecCHHHHHHHHHHHHHHHHhhCC
Q 012124 436 DTCIRISYAASLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 436 ~~~iRls~~~~~~~i~~~l~~l~~~l~~~~~ 466 (470)
++++|+|++. +++++++++|+++++.+.+
T Consensus 369 ~~~iRis~g~--e~~~~li~~l~~al~~~~~ 397 (404)
T 1e5e_A 369 DGMIRLSVGI--EDADELIADFKQGLDALLR 397 (404)
T ss_dssp TTEEEEECCS--SCHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEeCC--CCHHHHHHHHHHHHHHHHH
Confidence 5789999998 7788888888888876543
No 93
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=100.00 E-value=3.6e-36 Score=299.42 Aligned_cols=335 Identities=15% Similarity=0.130 Sum_probs=255.4
Q ss_pred CCCeEEccCCCC-CCCChHHHHHHHHHHHHc-C------CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChH
Q 012124 93 GVSVIRLAAGEP-DFDTPVLIAEAGINAIRE-G------FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164 (470)
Q Consensus 93 ~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~-~------~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~ 164 (470)
|++++++..++. .+++++.+.+++.+.+.+ . ...|+...+..++|+++++++ | .+++|++|+|++
T Consensus 45 g~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~---~~~~i~~~sG~~ 117 (401)
T 2bwn_A 45 KQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH----Q---KEAALVFSSAYN 117 (401)
T ss_dssp EEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT----T---CSEEEEESCHHH
T ss_pred CCcEEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHh----C---CCcEEEECCcHH
Confidence 456788988765 454566899999988865 2 123555567889999999986 3 257888888877
Q ss_pred HHHHHHHHHhc--CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc----CCceEEEEcCCCC
Q 012124 165 QSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSN 238 (470)
Q Consensus 165 ~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~i~l~~p~n 238 (470)
++..++..+. .+||+|+++.|+|+++...++..|++++.++.+ |++.+++.++ +++++|++++|+|
T Consensus 118 -a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~le~~l~~~~~~~~~~v~~~~~~n 189 (401)
T 2bwn_A 118 -ANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDPAAPKLIAFESVYS 189 (401)
T ss_dssp -HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCTTSCEEEEEESBCT
T ss_pred -HHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCC-------CHHHHHHHHHhhccCCceEEEEecCcC
Confidence 6666666553 599999999999999999999999999999863 6788887775 5789999999999
Q ss_pred CcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHH
Q 012124 239 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 318 (470)
Q Consensus 239 PtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~ 318 (470)
|||.+++ +++|+++|++| |++||+||+|+...|+......+....-..+.+++++||||.++++| ||++++++
T Consensus 190 ptG~~~~---l~~i~~l~~~~-~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G---G~~~~~~~ 262 (401)
T 2bwn_A 190 MDGDFGP---IKEICDIAEEF-GALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAASAR 262 (401)
T ss_dssp TTCCBCC---HHHHHHHHHHH-TCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEECHH
T ss_pred CCCCcCC---HHHHHHHHHHc-CCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC---CEEecCHH
Confidence 9999999 88999999999 99999999999655543221111111111234799999999998788 99999999
Q ss_pred HHHHHHHHhhh--ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeecc
Q 012124 319 FVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 396 (470)
Q Consensus 319 ~~~~l~~~~~~--~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~ 396 (470)
+++.+...... +..+++++.+.++.++++... ...+++++++++++++++.+.|+++ |+++..+.++ ++|+.++
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-~~~~~~~ 338 (401)
T 2bwn_A 263 MVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLK--TAEGQKLRDAQQMHAKVLKMRLKAL-GMPIIDHGSH-IVPVVIG 338 (401)
T ss_dssp HHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSSS-CEEEECC
T ss_pred HHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHHHHHC-CCcccCCCCC-eEEEEeC
Confidence 98887754332 233456678877777776421 2235788889999999999999888 8887777776 5888887
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC---CcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 397 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD---TCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~---~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
+.. +..++.+.|++++||.+.|+..|+.+ +++|++++. +++++++++++|+++++++
T Consensus 339 ~~~-----------~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 339 DPV-----------HTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp CHH-----------HHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred ChH-----------HHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 532 56788888875559999998877643 589999995 8999999999999887653
No 94
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=100.00 E-value=4.8e-36 Score=300.95 Aligned_cols=348 Identities=11% Similarity=0.083 Sum_probs=248.3
Q ss_pred cCCCeEEccCCCC--CCC-ChHHHHHHHHHHHHcCC---CCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 92 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGF---TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~---~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
+|+.++||+.|.+ ++. +++.+.+++.+++.... ..|.+..+..+|+++|++++. | . .+++|++|+|+++
T Consensus 39 ~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~---~-~-~~~~v~~~~g~~~ 113 (426)
T 1sff_A 39 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVP---G-D-FAKKTLLVTTGSE 113 (426)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSS---C-S-SCEEEEEESSHHH
T ss_pred CCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCC---c-c-cccEEEEeCchHH
Confidence 4566899988874 333 57889999999886532 246677889999999999862 3 2 3489999999999
Q ss_pred HHHHHHH---HhcCCCCeEEEcCCCCCChHH-HHHHcCCE-------------EEEecCcC---CCCCccCHHhHhhhcc
Q 012124 166 SILQAVL---AVCSPGDEVIIPAPFWVSYPE-MARIADAT-------------PVILPTRI---SENFLLDPKVLESKLT 225 (470)
Q Consensus 166 al~~~~~---~l~~~gd~Vlv~~p~y~~~~~-~~~~~g~~-------------~~~v~~~~---~~~~~~d~~~l~~~l~ 225 (470)
++.++++ .+.++| .|++.+|+|+++.. .+...|.+ ++.++++. ..++.+|++.|+++++
T Consensus 114 a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~ 192 (426)
T 1sff_A 114 AVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFK 192 (426)
T ss_dssp HHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHH
Confidence 9999988 677776 89999999988654 56666653 66777643 1134578999999886
Q ss_pred -----CCceEEEE-cCCCCCcc-cCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEec
Q 012124 226 -----EKSRLLIL-CSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 298 (470)
Q Consensus 226 -----~~~~~i~l-~~p~nPtG-~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S 298 (470)
+++++|++ ++++| || ..+|.+++++|.++|++| |++||+||+|.++.+.+.. ..+.. .+..+.+.|
T Consensus 193 ~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~-~~~li~De~~~~~~~~g~~-~~~~~----~~~~~di~s 265 (426)
T 1sff_A 193 NDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEH-GIMLIADEVQSGAGRTGTL-FAMEQ----MGVAPDLTT 265 (426)
T ss_dssp HTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGG----TTSCCSEEE
T ss_pred hccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHc-CCEEEEechhhccCcccch-hhhhh----cCCCCCEEE
Confidence 46677766 55678 99 789999999999999999 9999999999987654421 11111 122233559
Q ss_pred cCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc--
Q 012124 299 FSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-- 376 (470)
Q Consensus 299 ~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-- 376 (470)
|||.++ +|+|+||+++++++++.+.......+++.+++.|.++.++|+.. .+ ....++++++++.+.+.|++
T Consensus 266 ~sK~~~-~GlriG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~---~~--~~~~~~~~~~~~~l~~~l~~~~ 339 (426)
T 1sff_A 266 FAKSIA-GGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVF---EQ--ENLLQKANDLGQKLKDGLLAIA 339 (426)
T ss_dssp ECGGGG-TSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHHHHH
T ss_pred Eccccc-CCCceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHH---Hh--cCHHHHHHHHHHHHHHHHHHHH
Confidence 999998 59999999999998887764434456678999999998777631 11 12333444444555544443
Q ss_pred --CCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHH
Q 012124 377 --LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQA 452 (470)
Q Consensus 377 --~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~~ 452 (470)
++.+....+. |+++|+++++..... .....+..++++.|.++ ||.+.||..| ++++|++++ .+++++++
T Consensus 340 ~~~~~~~~~~~~-g~~~~~~~~~~~~~~---~~~~~~~~~l~~~l~~~-gi~v~~~~~~--~~~iRi~~~~~~~~~~i~~ 412 (426)
T 1sff_A 340 EKHPEIGDVRGL-GAMIAIELFEDGDHN---KPDAKLTAEIVARARDK-GLILLSCGPY--YNVLRILVPLTIEDAQIRQ 412 (426)
T ss_dssp HTCTTEEEEEEE-TTEEEEEEBGGGCTT---SBCHHHHHHHHHHHHHT-TEECEEESTT--SCEEEECCCTTCCHHHHHH
T ss_pred HhCCCeEEEEEE-EEEEEEEEecCcccc---CCChHHHHHHHHHHHHC-CcEEecCCCC--CCEEEEECCccCCHHHHHH
Confidence 3333333444 667899985310000 00001456788888765 9999998764 689999987 39999999
Q ss_pred HHHHHHHHHHhhC
Q 012124 453 AVERIKKGLLTLR 465 (470)
Q Consensus 453 ~l~~l~~~l~~~~ 465 (470)
++++|++++++++
T Consensus 413 ~~~~l~~~l~~~~ 425 (426)
T 1sff_A 413 GLEIISQCFDEAK 425 (426)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998765
No 95
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=100.00 E-value=6.8e-36 Score=296.00 Aligned_cols=328 Identities=18% Similarity=0.154 Sum_probs=252.3
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCC----C---CCCC-CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGF----T---RYTP-NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~----~---~y~~-~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
+.+.|+.+.+. +.|+.+.+++.+.+.... . .|.. ..+..++|+.+++++ | +++++|++|+|++++
T Consensus 16 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~a 88 (390)
T 1elu_A 16 NKTYFNFGGQG-ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF----N--VDPNTITITDNVTTG 88 (390)
T ss_dssp TSEECCTTTCC-CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT----T--SCGGGEEEESSHHHH
T ss_pred CeEEecCCccC-CCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHc----C--CCHHHEEEeCChHHH
Confidence 45888888754 456788888888776421 1 3422 367788888888885 4 467799999999999
Q ss_pred HHHHHHHh-cCCCCeEEEcCCCCCChHHH----HHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcc
Q 012124 167 ILQAVLAV-CSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG 241 (470)
Q Consensus 167 l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG 241 (470)
+.++++++ +++||+|++++|+|+++... ++..|++++.++++.++++.+|++.|++.+++++++|++++|+||||
T Consensus 89 ~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG 168 (390)
T 1elu_A 89 CDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTG 168 (390)
T ss_dssp HHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTC
T ss_pred HHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEeccccCCc
Confidence 99999999 89999999999999997654 46689999999986434567999999999998999999999999999
Q ss_pred cCCCHHHHHHHHHHHH----hCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH
Q 012124 242 SVYPKNLLDEIARIVA----KHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 317 (470)
Q Consensus 242 ~~~s~~~~~~l~~~~~----~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~ 317 (470)
.+++ +++|.++|+ ++ |++||+|++|+... .... +.. .+.++++.|+||.+. +|.++||+++++
T Consensus 169 ~~~~---~~~i~~l~~~~~~~~-~~~li~Dea~~~g~----~~~~---~~~-~~~d~~~~s~~K~~~-~~~g~G~~~~~~ 235 (390)
T 1elu_A 169 QVLP---LAEIMAVCRRHQGNY-PVRVLVDGAQSAGS----LPLD---FSR-LEVDYYAFTGHKWFA-GPAGVGGLYIHG 235 (390)
T ss_dssp CBCC---HHHHHHHHHHCCSSS-CCEEEEECTTTBTT----BCCC---TTT-SCCSEEEEESSSTTC-CCTTCEEEEECT
T ss_pred eecC---HHHHHHHHhhhhhhc-CcEEEEEcccccCC----cCCC---hhh-cCCCEEEcccccccc-CCCceEEEEECH
Confidence 9999 889999999 99 99999999998421 1111 222 356799999999553 667799999998
Q ss_pred HHHHHHHHH----------------------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012124 318 HFVAACNKI----------------------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 375 (470)
Q Consensus 318 ~~~~~l~~~----------------------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 375 (470)
++++.+... ......+++.+.+.++..+++.-. ...++++++++++++++.+.+.|+
T Consensus 236 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~-~~~~~~~~~~~~~~~~~~l~~~L~ 314 (390)
T 1elu_A 236 DCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQ-RQGTAEERYQAICQRSEFLWRGLN 314 (390)
T ss_dssp TTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHH
Confidence 887766432 122233456677776666665310 023478889999999999999999
Q ss_pred cCCCCeecC---CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHH
Q 012124 376 ELEGVKMSE---PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTL 450 (470)
Q Consensus 376 ~~~g~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i 450 (470)
+++|+++.. +.++++.| +++... +..++.+.|.++ ||.+.+|. .++++|++++ .+++++
T Consensus 315 ~~~g~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~~l~~~-gi~v~~~~---~~~~iRis~~~~~~~~~i 378 (390)
T 1elu_A 315 QLPHVHCLATSAPQAGLVSF-TVDSPL-----------GHRAIVQKLEEQ-RIYLRTIA---DPDCIRACCHYITDEEEI 378 (390)
T ss_dssp HSTTEEESCSSCCSSSEEEE-EECSSS-----------CHHHHHHHHHHT-TEECEEET---TTTEEEEECCTTCCHHHH
T ss_pred hcCCcEEecCccccccEEEE-EcCCCC-----------CHHHHHHHHHHC-CEEEEecC---CCCeEEEecccCCCHHHH
Confidence 888888774 35666555 876432 678899888655 99999986 3579999986 389999
Q ss_pred HHHHHHHHH
Q 012124 451 QAAVERIKK 459 (470)
Q Consensus 451 ~~~l~~l~~ 459 (470)
++++++|++
T Consensus 379 ~~~~~~l~~ 387 (390)
T 1elu_A 379 NHLLARLAD 387 (390)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999998864
No 96
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=100.00 E-value=1.9e-36 Score=298.05 Aligned_cols=325 Identities=12% Similarity=0.092 Sum_probs=249.2
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcC---------CCCCCCCcCcHHHHHH-HHHHHHHHcCCCCCCCcEEEecCh
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREG---------FTRYTPNAGTLELRSA-ICHKLKEENGLSYTPDQILVSNGA 163 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~---------~~~y~~~~g~~~lr~~-ia~~l~~~~g~~~~~~~i~it~g~ 163 (470)
++++.|..|.+..++++.+.+++.+.+... ...|.+..+..++++. +++++ |. + +|++|+|+
T Consensus 7 ~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~----~~--~--~v~~~~g~ 78 (371)
T 2e7j_A 7 KDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFL----GC--D--VARVTNGA 78 (371)
T ss_dssp -CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHT----TS--S--EEEEESSH
T ss_pred CCcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHc----CC--C--EEEEeCCh
Confidence 357888887766677889999998877542 1234567889999999 99986 32 2 99999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEec--CcCCCCCccCHHhHhhhcc-----CCceEEEEcCC
Q 012124 164 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP--TRISENFLLDPKVLESKLT-----EKSRLLILCSP 236 (470)
Q Consensus 164 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~--~~~~~~~~~d~~~l~~~l~-----~~~~~i~l~~p 236 (470)
++++.+++++++++||+|++++|+|+++...++..|++++.++ .+. ++.+|++.|+++++ +++++|++++|
T Consensus 79 t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~ 156 (371)
T 2e7j_A 79 REAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYP--DYAITPENFAQTIEETKKRGEVVLALITYP 156 (371)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTT--TCCCCHHHHHHHHHHHTTTSCEEEEEEESS
T ss_pred HHHHHHHHHHHhCCCCEEEEccCcchHHHHHHHHcCCeEEEeecccCC--CCCcCHHHHHHHHHhhcccCCeEEEEEECC
Confidence 9999999999999999999999999999999999999999999 653 46699999999997 78999999999
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC
Q 012124 237 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 316 (470)
Q Consensus 237 ~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~ 316 (470)
+||||.+++ +++|.++|++| |++||+|++|+.+... .++..+ +..++++||||.++ ++.|+||++++
T Consensus 157 ~nptG~~~~---~~~i~~~~~~~-~~~li~D~a~~~~~~~----~~~~~~----~~di~~~s~sK~~~-~~~~~G~~~~~ 223 (371)
T 2e7j_A 157 DGNYGNLPD---VKKIAKVCSEY-DVPLLVNGAYAIGRMP----VSLKEI----GADFIVGSGHKSMA-ASGPIGVMGMK 223 (371)
T ss_dssp CTTTCCCCC---HHHHHHHHHTT-TCCEEEECTTTBTTBC----CCHHHH----TCSEEEEEHHHHSS-CCSSCEEEEEC
T ss_pred CCCCcccCC---HHHHHHHHHHc-CCeEEEECccccCCCC----CChhhc----CCCEEEecCCcCCC-CCCCcEEEEEe
Confidence 999999999 68999999999 9999999999975432 222222 34499999999997 55699999999
Q ss_pred HHHHHH-HHHHhh--hc-----cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH--HHHHHHHHHHhccCCCCeecCCC
Q 012124 317 KHFVAA-CNKIQS--QF-----TSGASSISQKAGVAALGLGYAGGEVVSKMVKAF--RERRDFLVKSFGELEGVKMSEPQ 386 (470)
Q Consensus 317 ~~~~~~-l~~~~~--~~-----~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~~g~~~~~~~ 386 (470)
+++++. +..... .. ...++...+.++..+++. ... +..+++ +++++++.+.|+++ |+++..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~---~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~ 296 (371)
T 2e7j_A 224 EEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPH---VRE---RIKRWDEEVEKARRFAAEMEKL-GIKQLGDN 296 (371)
T ss_dssp TTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHH---HHH---HGGGHHHHHHHHHHHHHHHHHT-TCEEESSS
T ss_pred chhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHHHHHc-CcEEecCC
Confidence 988776 654332 11 334455555555555553 111 566667 88888999999888 88887663
Q ss_pred --ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC------CCcEE-EEee---cCHHHHHHHH
Q 012124 387 --GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD------DTCIR-ISYA---ASLTTLQAAV 454 (470)
Q Consensus 387 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~------~~~iR-ls~~---~~~~~i~~~l 454 (470)
.+.++|++++ +..++.+.|. ++||.+.| ..|.. ++++| ++++ .+++++++++
T Consensus 297 ~~~~~~~~~~~~--------------~~~~~~~~l~-~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~ 360 (371)
T 2e7j_A 297 PHNHDLMFFHAE--------------VLYEISKKAK-GGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVL 360 (371)
T ss_dssp SCCSSEEEEECH--------------HHHHHHHHSS-SGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHH
T ss_pred CccCceEEEECC--------------CHHHHHHHHH-HCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHHHHHHH
Confidence 3446888885 2567888776 55999988 43322 67999 9999 5899999999
Q ss_pred HHHHHHHHhh
Q 012124 455 ERIKKGLLTL 464 (470)
Q Consensus 455 ~~l~~~l~~~ 464 (470)
++|+++++++
T Consensus 361 ~~l~~~~~~~ 370 (371)
T 2e7j_A 361 NAFKEIIEKY 370 (371)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9999998765
No 97
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=100.00 E-value=6e-35 Score=289.55 Aligned_cols=333 Identities=12% Similarity=0.064 Sum_probs=248.7
Q ss_pred EEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcC
Q 012124 97 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS 176 (470)
Q Consensus 97 i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~ 176 (470)
+.|..+.+. .+|+.+++++.+.+.. ...|....+..++|+.+++++ |. ++++|++|+|+++++.++++++++
T Consensus 10 ~yl~~~~~~-~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----g~--~~~~v~~t~g~t~a~~~~~~~~~~ 81 (392)
T 2z9v_A 10 VITLTAGPV-NAYPEVLRGLGRTVLY-DYDPAFQLLYEKVVDKAQKAM----RL--SNKPVILHGEPVLGLEAAAASLIS 81 (392)
T ss_dssp SEECSSSCC-CCCHHHHHHTTSCCCC-TTSHHHHHHHHHHHHHHHHHT----TC--SSCCEEESSCTHHHHHHHHHHHCC
T ss_pred ceeecCCCc-CCCHHHHHHHhccccc-cccHHHHHHHHHHHHHHHHHh----CC--CCCEEEEeCCchHHHHHHHHHhcC
Confidence 344444443 4577888887765432 111112234566777777764 53 568999999999999999999999
Q ss_pred CCCeEEEcCCCCCCh--HHHHHHcCCEEEEecCcCCCCCccCHHhHhhhc--cCCceEEEEcCCCCCcccCCCHHHHHHH
Q 012124 177 PGDEVIIPAPFWVSY--PEMARIADATPVILPTRISENFLLDPKVLESKL--TEKSRLLILCSPSNPTGSVYPKNLLDEI 252 (470)
Q Consensus 177 ~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l--~~~~~~i~l~~p~nPtG~~~s~~~~~~l 252 (470)
+||+|++++|+|+++ ...++..|++++.++++.+ +.+|++.|++++ .+++++|++++|+||||.+++ +++|
T Consensus 82 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~---l~~i 156 (392)
T 2z9v_A 82 PDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYN--EAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINP---IDAI 156 (392)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTT--SCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECC---HHHH
T ss_pred CCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCC--CCCCHHHHHHHHhcCCCCcEEEEeccCCCCceecc---HHHH
Confidence 999999999999875 3445668999999998643 358999999999 458899999999999999999 7899
Q ss_pred HHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh-----
Q 012124 253 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ----- 327 (470)
Q Consensus 253 ~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~----- 327 (470)
.++|++| |++||+|++|+.. .....+.. .+..+++.|+||.++ ++.++||+++++++++.+....
T Consensus 157 ~~l~~~~-~~~li~D~a~~~g----~~~~~~~~----~~~d~~~~s~sK~~~-~~~g~G~l~~~~~~~~~l~~~~~g~~~ 226 (392)
T 2z9v_A 157 GALVSAH-GAYLIVDAVSSFG----GMKTHPED----CKADIYVTGPNKCLG-APPGLTMMGVSERAWAKMKANPLAPRA 226 (392)
T ss_dssp HHHHHHT-TCEEEEECTTTBT----TBSCCGGG----GTCSEEEECSSSTTC-CCSCCEEEEECHHHHHHHHTCTTSCCS
T ss_pred HHHHHHc-CCeEEEEcccccC----Cccccccc----ccceEEEecCccccc-CCCceeEEEECHHHHHHhhhccCCCCc
Confidence 9999999 9999999999742 11112222 245689999999663 3334699999999988776421
Q ss_pred ---------------hhccCCCChHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHHHHHhccCCCCeecCCC----c
Q 012124 328 ---------------SQFTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----G 387 (470)
Q Consensus 328 ---------------~~~~~~~~~~~q~a~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~ 387 (470)
.....+++...+.++..+++. ..++ +++++++++++++++.+.|+++ |+++..|. .
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~ 302 (392)
T 2z9v_A 227 SMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDL---YLNEGPEAVWARHALTAKAMRAGVTAM-GLSVWAASDSIAS 302 (392)
T ss_dssp STTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBC
T ss_pred eeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHHHHHc-CCeeccCCccccC
Confidence 112234556666666666654 2344 7788899999999999999888 88776533 3
Q ss_pred eEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe-e--cCHHHHHHHHHHHHHHHHhh
Q 012124 388 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY-A--ASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 388 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~-~--~~~~~i~~~l~~l~~~l~~~ 464 (470)
+.++|+.+|+.. +..++.+.|.+++||.+.+|..+..++++|+++ + .+++++++++++|+++++++
T Consensus 303 ~~~~~~~~~~~~-----------~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~ 371 (392)
T 2z9v_A 303 PTTTAVRTPDGV-----------DEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAA 371 (392)
T ss_dssp TTEEEEECCTTC-----------CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred CceEEEECCCCC-----------CHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHc
Confidence 566888887432 678899988876699999998766678999995 5 39999999999999999887
Q ss_pred CCC
Q 012124 465 RPG 467 (470)
Q Consensus 465 ~~~ 467 (470)
+..
T Consensus 372 ~~~ 374 (392)
T 2z9v_A 372 GRK 374 (392)
T ss_dssp TCC
T ss_pred CCC
Confidence 643
No 98
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=100.00 E-value=1.2e-34 Score=289.30 Aligned_cols=332 Identities=17% Similarity=0.121 Sum_probs=251.4
Q ss_pred cCCCeEEccCCCC-CCCChHHHHHHHHHHHHcC---CCCCCCC----cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecCh
Q 012124 92 AGVSVIRLAAGEP-DFDTPVLIAEAGINAIREG---FTRYTPN----AGTLELRSAICHKLKEENGLSYTPDQILVSNGA 163 (470)
Q Consensus 92 ~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~---~~~y~~~----~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~ 163 (470)
+|+.++||+.+++ ++..++.+.+++.+++.+. ...|... ....++++.+++++ |. +..++++++
T Consensus 57 ~g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~----~~~i~~~sG 128 (409)
T 3kki_A 57 ASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFT----GF----DECLLSQSG 128 (409)
T ss_dssp CCTTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHH----TC----SEEEEESCH
T ss_pred CCCceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHh----CC----CeEEEecch
Confidence 3567899988763 3556899999999998762 2222222 33456666666664 43 234455555
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCccc
Q 012124 164 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGS 242 (470)
Q Consensus 164 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~ 242 (470)
++++..++++++++||.|++++|+|+.+...++..|++++.++. +|++.|++++++ ++++|++++|+||||.
T Consensus 129 t~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~~~vi~~~~~nptG~ 201 (409)
T 3kki_A 129 WNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMH-------NNCDHLRMLIQRHGPGIIVVDSIYSTLGT 201 (409)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECT-------TCHHHHHHHHHHHCSCEEEEESBCTTTCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecC-------CCHHHHHHHHHhcCCeEEEECCCCCCCCC
Confidence 79999999999999999999999999999999999999998875 589999999965 5899999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHH
Q 012124 243 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 322 (470)
Q Consensus 243 ~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~ 322 (470)
+++ +++|.++|++| |++||+||+|+.+.++..........+...+.+|++.||||.++++ .||+++++++++.
T Consensus 202 ~~~---l~~l~~la~~~-~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~---gg~v~~~~~~~~~ 274 (409)
T 3kki_A 202 IAP---LAELVNISKEF-GCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR---AGAIWCNNEVNRC 274 (409)
T ss_dssp BCC---HHHHHHHHHHH-TCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS---CEEEEESSSGGGT
T ss_pred cCC---HHHHHHHHHHc-CCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC---ceEEEECHHHHHH
Confidence 999 88999999999 9999999999986554222222211221134569999999999844 4999999998887
Q ss_pred HHHHhhh--ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccC
Q 012124 323 CNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 400 (470)
Q Consensus 323 l~~~~~~--~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~ 400 (470)
+...... +....+++.+.++.+.++. .+..+++++.++++++++.+.|+++ |+.+. ..+.++|+.++...
T Consensus 275 ~~~~~~~~~~~~~~~~~~~aa~~aal~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~~- 346 (409)
T 3kki_A 275 VPFISYPAIFSSTLLPYEAAGLETTLEI----IESADNRRQHLDRMARKLRIGLSQL-GLTIR--SESQIIGLETGDER- 346 (409)
T ss_dssp HHHHCHHHHHSBCCCHHHHHHHHHHHHH----HHHCHHHHHHHHHHHHHHHHHHHTT-TCCCC--CSSSEEEEEEESHH-
T ss_pred HHHhCcCccccCCCcHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHc-CCccC--CCCCEEEEEeCCHH-
Confidence 7764332 2334566666677777764 2233678889999999999999988 77665 35666888887542
Q ss_pred CcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 401 SEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
+..++++.|+++ ||.+.|+..+.. .+++|++++. +++++++++++|+++++..
T Consensus 347 ----------~~~~~~~~L~~~-Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 404 (409)
T 3kki_A 347 ----------NTEKVRDYLESN-GVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYG 404 (409)
T ss_dssp ----------HHHHHHHHHHHT-TEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred ----------HHHHHHHHHHHC-CceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhcC
Confidence 466788888877 999988654322 4689999985 8999999999999999864
No 99
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=100.00 E-value=9.8e-35 Score=283.61 Aligned_cols=321 Identities=13% Similarity=0.057 Sum_probs=243.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcC
Q 012124 106 FDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 185 (470)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~ 185 (470)
.++|+.+++++.+.+.. ...|....+..++|+++++++ | +++++|++|+|+++++.+++++++++||+|++++
T Consensus 10 ~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----g--~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~ 82 (352)
T 1iug_A 10 VRLHPKALEALARPQLH-HRTEAAREVFLKARGLLREAF----R--TEGEVLILTGSGTLAMEALVKNLFAPGERVLVPV 82 (352)
T ss_dssp CCCCHHHHHHHHSCCCC-TTSHHHHHHHHHHHHHHHHHH----T--CSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCCHHHHHHhccCCCC-ccCHHHHHHHHHHHHHHHHHh----C--CCCceEEEcCchHHHHHHHHHhccCCCCeEEEEe
Confidence 34578888888776532 111111234567788887775 4 3568999999999999999999999999999999
Q ss_pred CCCCChH--HHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC-CE
Q 012124 186 PFWVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP-RL 262 (470)
Q Consensus 186 p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~-~~ 262 (470)
|+|+++. ..++..|++++.++++. ++.+|++.+++ +++++|++++|+||||.+++ +++|.++|++|+ |+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~~ 154 (352)
T 1iug_A 83 YGKFSERFYEIALEAGLVVERLDYPY--GDTPRPEDVAK---EGYAGLLLVHSETSTGALAD---LPALARAFKEKNPEG 154 (352)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCTTTSCC---SSCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTC
T ss_pred CCchhHHHHHHHHHcCCceEEEeCCC--CCCCCHHHHhc---cCCcEEEEEEecCCcceecC---HHHHHHHHHhhCCCC
Confidence 9999865 45566899999999864 34589999887 67899999999999999999 778899998873 69
Q ss_pred EEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHH---------HHH----H-hh
Q 012124 263 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA---------CNK----I-QS 328 (470)
Q Consensus 263 ~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~---------l~~----~-~~ 328 (470)
+||+|++|+.. .....+.. .+..+++.|+||.++ .+.++||+++++++++. +.. . ..
T Consensus 155 ~li~D~a~~~~----~~~~~~~~----~~~d~~~~s~~K~~~-~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (352)
T 1iug_A 155 LVGADMVTSLL----VGEVALEA----MGVDAAASGSQKGLM-CPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEG 225 (352)
T ss_dssp EEEEECTTTBT----TBCCCSGG----GTCSEEEEESSSTTC-CCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTT
T ss_pred EEEEECCcccc----Ccceeccc----cCeeEEEecCccccc-CCCceeEEEECHHHHHHhhCCCceeeHHHHHhhcccC
Confidence 99999999731 11112221 245688999999553 22348999999987754 221 1 12
Q ss_pred hccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC-ceEEEeeeccCccCCcccCCC
Q 012124 329 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-GAFYLFIDFSTYYGSEAEGFG 407 (470)
Q Consensus 329 ~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~ 407 (470)
....+.+...+.++.++++. ..+++++++++++++++++.+.|+++ |+++..+. .+.++|+++++..
T Consensus 226 ~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-------- 293 (352)
T 1iug_A 226 ESAWTPAINLVLAVAAVLEE---VLPRLEEHLALKAWQNALLYGVGEEG-GLRPVPKRFSPAVAAFYLPEGV-------- 293 (352)
T ss_dssp CCSSCCCHHHHHHHHHHHHH---HGGGHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSBCTTCEEEECCTTC--------
T ss_pred CCCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccccccCCeEEEEEcCCCC--------
Confidence 23445677777777777764 13347888999999999999999988 88887764 5666888887432
Q ss_pred CCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhCC
Q 012124 408 KIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 408 ~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~~ 466 (470)
+..++.+.|.++ ||.+.+|..+..++++|++++. +++++++++++|+++++++.+
T Consensus 294 ---~~~~~~~~l~~~-gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 350 (352)
T 1iug_A 294 ---PYARVKEAFAQR-GAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEILP 350 (352)
T ss_dssp ---CHHHHHHHHHTT-TEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHHC-
T ss_pred ---CHHHHHHHHHHC-CEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHhcC
Confidence 678899988766 9999998754456899999996 789999999999999988754
No 100
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=100.00 E-value=3.2e-35 Score=291.94 Aligned_cols=329 Identities=14% Similarity=0.140 Sum_probs=253.3
Q ss_pred CCCCCCCChHHHHHHHHHHHHcCCCCCCCC--cCcHHHHHHHHHHHHHHcCCCCCCC-cEEEecChHHHHHHHHHHhcCC
Q 012124 101 AGEPDFDTPVLIAEAGINAIREGFTRYTPN--AGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSP 177 (470)
Q Consensus 101 ~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~--~g~~~lr~~ia~~l~~~~g~~~~~~-~i~it~g~~~al~~~~~~l~~~ 177 (470)
.+.++..+++.+.+++.+.+. ..|.+. ....++|+++++++. ++++ +|++|+|+++++..++.+++++
T Consensus 22 ~~~~p~~~~~~v~~a~~~~~~---~~~~~~~~~~~~~l~~~la~~~~------~~~~~~v~~~~g~t~al~~~~~~~~~~ 92 (396)
T 2ch1_A 22 MGPGPSNCSKRVLTAMTNTVL---SNFHAELFRTMDEVKDGLRYIFQ------TENRATMCVSGSAHAGMEAMLSNLLEE 92 (396)
T ss_dssp CSSSSCCCCHHHHHHTTSCCC---CTTCHHHHHHHHHHHHHHHHHHT------CCCSCEEEESSCHHHHHHHHHHHHCCT
T ss_pred ecCCCCCCCHHHHHHhccccc---cCCChhHHHHHHHHHHHHHHHhC------CCCCcEEEECCcHHHHHHHHHHHhcCC
Confidence 344444567777777665432 235332 236788888888863 3566 8999999999999999999999
Q ss_pred CCeEEEcCCCCCChH--HHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHHHHHHHH
Q 012124 178 GDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIAR 254 (470)
Q Consensus 178 gd~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~~l~~ 254 (470)
||+|++++|+|+++. ..++..|++++.++++. ++.+|++.|++++++ ++++|++++|+||||.+++ +++|.+
T Consensus 93 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---~~~i~~ 167 (396)
T 2ch1_A 93 GDRVLIAVNGIWAERAVEMSERYGADVRTIEGPP--DRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQP---LEGVGQ 167 (396)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT--TSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHH
T ss_pred CCeEEEEcCCcccHHHHHHHHHcCCceEEecCCC--CCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecC---HHHHHH
Confidence 999999999999985 47788999999999864 456899999999987 8999999999999999999 889999
Q ss_pred HHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh-------
Q 012124 255 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ------- 327 (470)
Q Consensus 255 ~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~------- 327 (470)
+|+++ |++||+|++|.. + ..... +.. .+..+++.|++|.++ ++.++||+++++++++.+...+
T Consensus 168 l~~~~-~~~li~Dea~~~---g-~~~~~---~~~-~~~d~~~~s~~K~~~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 237 (396)
T 2ch1_A 168 ICHQH-DCLLIVDAVASL---C-GVPFY---MDK-WEIDAVYTGAQKVLG-APPGITPISISPKALDVIRNRRTKSKVFY 237 (396)
T ss_dssp HHHHT-TCEEEEECTTTB---T-TBCCC---TTT-TTCCEEECCCC-CCC-CCSSCEEEEECHHHHHHHHTCSSCCSCGG
T ss_pred HHHHc-CCEEEEEccccc---c-CCccc---hhh-cCcCEEEEcCCcccc-CCCCeEEEEECHHHHHhhhhccCcccceE
Confidence 99999 999999999983 2 11112 222 233477789999875 4456799999998887764310
Q ss_pred ----------------hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCce---
Q 012124 328 ----------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA--- 388 (470)
Q Consensus 328 ----------------~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g--- 388 (470)
.....+.+...|.++.++++.. .++++++++++++++++++.+.|+++ |+++..+.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~ 314 (396)
T 2ch1_A 238 WDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQI--AEEGLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRHRL 314 (396)
T ss_dssp GCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBC
T ss_pred echHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHC-CCeeccCCccccC
Confidence 1122446777888888888741 13457888999999999999999988 8887766653
Q ss_pred -EEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe-ec--CHHHHHHHHHHHHHHHHhh
Q 012124 389 -FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY-AA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 389 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~-~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
.++|+++|... +..++.++|++++||.+.+|..+..++++|+++ .. +++++++++++|+++++++
T Consensus 315 ~~~~~~~~~~~~-----------~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~ 383 (396)
T 2ch1_A 315 PTVTGIMIPKGV-----------DWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKAT 383 (396)
T ss_dssp TTEEEEECCTTC-----------CHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEcCCCC-----------CHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHh
Confidence 36788886432 678899988876699999987666678999999 32 8899999999999999887
Q ss_pred CCC
Q 012124 465 RPG 467 (470)
Q Consensus 465 ~~~ 467 (470)
++.
T Consensus 384 ~~~ 386 (396)
T 2ch1_A 384 HPD 386 (396)
T ss_dssp CTT
T ss_pred Ccc
Confidence 653
No 101
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=100.00 E-value=2e-34 Score=284.56 Aligned_cols=320 Identities=14% Similarity=0.132 Sum_probs=241.1
Q ss_pred CChHHHHHHHHHHHHcCCC----CCCCC----cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc---
Q 012124 107 DTPVLIAEAGINAIREGFT----RYTPN----AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC--- 175 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~----~y~~~----~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~--- 175 (470)
++|+.+++++.+.+.+... .|... .+..+++++++++ +| +++++|++|+|+++++.+++.++.
T Consensus 11 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~----~g--~~~~~v~~~~g~t~a~~~~~~~l~~~~ 84 (382)
T 4eb5_A 11 PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKL----VN--GGGGTVVFTSGATEANNLAIIGYAMRN 84 (382)
T ss_dssp CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHH----HT--CTTEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHH----hC--CCCCeEEEcCchHHHHHHHHHHHHhhc
Confidence 4688999999998875211 13221 2345556666655 45 356899999999999999999987
Q ss_pred -CCCCeEEEcCCCCCChHHHHHH---cCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHH
Q 012124 176 -SPGDEVIIPAPFWVSYPEMARI---ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 176 -~~gd~Vlv~~p~y~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
++||+|++++|+|+++...+.. .|++++.++++. ++.+|++.|++++++++++|++++|+||||.+++ +++
T Consensus 85 ~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~ 159 (382)
T 4eb5_A 85 ARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK--YGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQP---VEE 159 (382)
T ss_dssp GGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCT--TSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCC---HHH
T ss_pred cCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCC--CCccCHHHHHHHhcCCCeEEEEeccCCCccccCC---HHH
Confidence 8999999999999988776653 799999999864 3568999999999888999999999999999999 789
Q ss_pred HHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHH-HHHHHH----H
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF-VAACNK----I 326 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~-~~~l~~----~ 326 (470)
|+++|++| |++ |+|++|+. + .....+.. .+.++++.||||.+|.+| +||++++++. +..+.. .
T Consensus 160 i~~l~~~~-~~~-i~D~a~~~---g-~~~~~~~~----~~~di~~~s~sK~~g~~g--~G~~~~~~~~~l~~~~~~~~~~ 227 (382)
T 4eb5_A 160 ISEVLAGK-AAL-HIDATASV---G-QIEVDVEK----IGADMLTISSNDIYGPKG--VGALWIRKEAKLQPVILGGGQE 227 (382)
T ss_dssp HHHHHTTS-SEE-EEECTTTB---T-TBCCCHHH----HTCSEEEEETGGGTCCSS--CEEEEEETTCCCCCSSCSSCTG
T ss_pred HHHHHHHC-CCE-EEEcchhc---C-CcccCccc----cCCCEEEeehHHhcCCCc--eEEEEEccccccCceecCCCcc
Confidence 99999999 999 99999983 1 11112222 245689999999987556 7999987763 111100 0
Q ss_pred hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc---eEEEeeeccCccCCcc
Q 012124 327 QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG---AFYLFIDFSTYYGSEA 403 (470)
Q Consensus 327 ~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~---g~~~~~~~~~~~~~~~ 403 (470)
......+++...+.++..+++. ..+++++++++++++++++.+.|++++|+++..+.+ +.++++.+++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 299 (382)
T 4eb5_A 228 NGLRSGSENVPSIVGFGKAAEI---TAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI----- 299 (382)
T ss_dssp GGTSCSCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTS-----
T ss_pred ccccCCCccHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCCc-----
Confidence 1122334566666666666664 245678889999999999999999988888776542 33477777642
Q ss_pred cCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012124 404 EGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISYAA--SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 404 ~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-------------------~~~iRls~~~--~~~~i~~~l~~l~~~l~ 462 (470)
+..++.+.|.++ ||.+.+|..|.. ++++|++++. +++++++++++|+++++
T Consensus 300 -------~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 371 (382)
T 4eb5_A 300 -------EGESIVLSLDMA-GIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIE 371 (382)
T ss_dssp -------CHHHHHHHHHHH-TCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHC-CEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 678898888754 999999876432 4789999994 89999999999999988
Q ss_pred hhC
Q 012124 463 TLR 465 (470)
Q Consensus 463 ~~~ 465 (470)
+++
T Consensus 372 ~~~ 374 (382)
T 4eb5_A 372 RLR 374 (382)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 102
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=100.00 E-value=9e-35 Score=288.41 Aligned_cols=331 Identities=13% Similarity=0.155 Sum_probs=251.0
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCC--CcCcHHHHHHHHHHHHHHcCCCCCCC-cEEEecChHHHHHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP--NAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAV 171 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~--~~g~~~lr~~ia~~l~~~~g~~~~~~-~i~it~g~~~al~~~~ 171 (470)
..+.++.|. .++|+.+.+++.+.+.. .|.+ ..+..++++.+++++ |. +++ +|++|+|+++++.+++
T Consensus 19 ~~~~~~~g~--~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~----g~--~~~~~i~~~~g~t~a~~~~~ 87 (393)
T 2huf_A 19 NKLLMGPGP--SNAPQRVLDAMSRPILG---HLHPETLKIMDDIKEGVRYLF----QT--NNIATFCLSASGHGGMEATL 87 (393)
T ss_dssp CCEECSSSC--CCCCHHHHHHTTSCCCC---TTSHHHHHHHHHHHHHHHHHH----TC--CCSEEEEESSCHHHHHHHHH
T ss_pred CeEEecCCC--CCCCHHHHHHHHhhhcc---CCCHHHHHHHHHHHHHHHHHh----CC--CCCcEEEEcCcHHHHHHHHH
Confidence 346666663 45678888887765432 2322 235566777777665 53 454 8999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChH--HHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHH
Q 012124 172 LAVCSPGDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNL 248 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~ 248 (470)
.+++++||+|++++|+|+++. ..++..|++++.++++.+ +.+|++.|++++++ ++++|++++|+||||..++
T Consensus 88 ~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~--- 162 (393)
T 2huf_A 88 CNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKVG--QSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQG--- 162 (393)
T ss_dssp HHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---
T ss_pred HHHhCCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCCC--CCCCHHHHHHHHhccCCcEEEEEccCCCccccCC---
Confidence 999999999999999998843 345678999999998643 45899999999987 8999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccc-ccccceeeEEEcCHHHHHHHHHHh
Q 012124 249 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACNKIQ 327 (470)
Q Consensus 249 ~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~-~~~G~r~G~~~~~~~~~~~l~~~~ 327 (470)
+++|.++|++| |++||+|+++... ..... +.. .+.++++.|+||.+ |++|+ ||+++++++++.+....
T Consensus 163 l~~i~~~~~~~-~~~li~D~a~~~~----~~~~~---~~~-~~~d~~~~s~sK~l~g~~G~--G~~~~~~~~~~~~~~~~ 231 (393)
T 2huf_A 163 LEGVGALCHQH-NCLLIVDTVASLG----GAPMF---MDR-WEIDAMYTGSQKVLGAPPGI--TPVSFSHRAVERYKRRN 231 (393)
T ss_dssp CTTHHHHHHHT-TCEEEEECTTTBT----TBCCC---TTT-TTCSEEECCSSSTTCCCSSC--EEEEECHHHHHHHHTCS
T ss_pred HHHHHHHHHHc-CCEEEEEcccccC----CCCcc---hhh-cCccEEEECCCcccccCCCe--EEEEECHHHHHHHhhcC
Confidence 88999999999 9999999998631 11111 222 35679999999975 55675 99999999998876541
Q ss_pred ---hh--------------------ccCCCChHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCCeec
Q 012124 328 ---SQ--------------------FTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMS 383 (470)
Q Consensus 328 ---~~--------------------~~~~~~~~~q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 383 (470)
.. ...+++...+.++.++++. ..+ .+++++++++++++++.+.|+++ |+.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 307 (393)
T 2huf_A 232 TKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAM---ACEEGLPALIARHEDCAKRLYRGLQDA-GFELY 307 (393)
T ss_dssp SCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBS
T ss_pred CCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHH---HHHhCHHHHHHHHHHHHHHHHHHHHHc-CCeec
Confidence 00 1123556666666666664 122 37788889999999999999988 88776
Q ss_pred CCC---ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe-ec--CHHHHHHHHHHH
Q 012124 384 EPQ---GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY-AA--SLTTLQAAVERI 457 (470)
Q Consensus 384 ~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~-~~--~~~~i~~~l~~l 457 (470)
.+. +++++|++++... +..++.+.|++++||.+.+|..|..++++|+++ +. +++++++++++|
T Consensus 308 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l 376 (393)
T 2huf_A 308 ADPKDRLSTVTTIKVPQGV-----------DWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVF 376 (393)
T ss_dssp SCGGGBCTTEEEEECCTTC-----------CHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHH
T ss_pred cCccccCCcEEEEEcCCCC-----------CHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHH
Confidence 653 3556788886432 678899888876699999998776678999999 52 688999999999
Q ss_pred HHHHHhhCCC
Q 012124 458 KKGLLTLRPG 467 (470)
Q Consensus 458 ~~~l~~~~~~ 467 (470)
++++++++..
T Consensus 377 ~~~~~~~~~~ 386 (393)
T 2huf_A 377 QEAVAAVKPD 386 (393)
T ss_dssp HHHHHHHCC-
T ss_pred HHHHHHcCCC
Confidence 9999987754
No 103
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=100.00 E-value=6.4e-34 Score=281.13 Aligned_cols=323 Identities=13% Similarity=0.120 Sum_probs=245.1
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcC
Q 012124 106 FDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 185 (470)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~ 185 (470)
.++++.+++++.+.+.. .+ .....++.+.+.+.+.+.+|.+.++++|++|+|+++++. ++..++++||+|++++
T Consensus 11 ~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi~~~ 84 (384)
T 3zrp_A 11 TTIKEDVLVAGLENNVG---FT--SKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLKPNDKILVVS 84 (384)
T ss_dssp SCCCHHHHHHTTCCSCC---TT--SHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEEEEC
T ss_pred CCCCHHHHHHhhccccc---cc--cHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEEEec
Confidence 34577777776654321 12 122234444444444444565433389999999999999 9999999999999999
Q ss_pred CCCCC--hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCE
Q 012124 186 PFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 262 (470)
Q Consensus 186 p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~ 262 (470)
|+|++ +...++..|++++.++++. ++.+|++.|++++++ ++++|++++|+||||.+++ +++|.++|++| |+
T Consensus 85 ~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~ 158 (384)
T 3zrp_A 85 NGVFGDRWEQIFKRYPVNVKVLRPSP--GDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREP---VKDVINKIRKY-VE 158 (384)
T ss_dssp SSHHHHHHHHHHTTSSCEEEEECCST--TCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECC---HHHHHHHHGGG-EE
T ss_pred CCcchHHHHHHHHHcCCcEEEecCCC--CCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECc---HHHHHHHHHhc-CC
Confidence 99965 5566678999999999875 345899999999976 8999999999999999999 88899999999 99
Q ss_pred EEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHH-------------HHHhh-
Q 012124 263 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC-------------NKIQS- 328 (470)
Q Consensus 263 ~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l-------------~~~~~- 328 (470)
+||+|++|+.... ... +.. .+..+++.|+||.++ ++.++||+++++++++.+ .....
T Consensus 159 ~li~D~a~~~~~~----~~~---~~~-~~~d~~~~s~~K~~~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (384)
T 3zrp_A 159 LIVVDGVSSVGAE----EVK---AEE-WNVDVYLTASQKALG-SAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPV 229 (384)
T ss_dssp EEEEECTTTTTTS----CCC---TTT-TTCSEEEEETTSTTC-CCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHH
T ss_pred EEEEECcccccCc----ccc---ccc-cCCCEEEecCccccc-CCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHH
Confidence 9999999875221 111 121 356699999999885 445599999999998877 32221
Q ss_pred --------hcc-CCCChHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC----ceEEEeee
Q 012124 329 --------QFT-SGASSISQKAGVAALGLGYAGG-EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFYLFID 394 (470)
Q Consensus 329 --------~~~-~~~~~~~q~a~~~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~g~~~~~~ 394 (470)
... .+++...+.++..+++. .. ..+++++++++++++++.+.|+++ |+++..+. .++++|+.
T Consensus 230 ~~~~~~~~~~~~g~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 305 (384)
T 3zrp_A 230 MRGAEEGKAAYFATPPVHVILQLAEAFRL---IEKEGIENRIKRHTMVASAIRAGLEAL-GLEIVARRPESYSNTVTGVI 305 (384)
T ss_dssp HHHHHTTCCCCSSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSCSSGGGBCSSEEEEE
T ss_pred HHhhcccCCCcCCCCCHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHHHHHHHHHC-CCeEccCcccccCccEEEEE
Confidence 111 24566666666666653 12 337889999999999999999988 88877666 46678888
Q ss_pred ccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhCCC
Q 012124 395 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRPG 467 (470)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~~~ 467 (470)
++.. +..++.+.|.++ ||.+.+|..+.. +++|+++.. +++++++++++|++++++++..
T Consensus 306 ~~~~------------~~~~~~~~l~~~-gi~v~~g~~~~~-~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~~ 366 (384)
T 3zrp_A 306 LKVA------------DPQKVLAGTVNE-GVEFAPGVHPAF-KYFRIGHMGWVTPNDAIIAISVIERTLRKLGEP 366 (384)
T ss_dssp CSSS------------CHHHHHHHHHTT-TCCCEECCCTTC-CEEEEECCSSCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCC------------CHHHHHHHHHHC-CEEEecCCCCCc-CEEEEeccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 8763 788999988766 999999875433 899999885 8999999999999999987654
No 104
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=6e-34 Score=283.79 Aligned_cols=328 Identities=13% Similarity=0.053 Sum_probs=248.3
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCC----CCCC----CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGF----TRYT----PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~----~~y~----~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
+.+.|..+.+. ++|+.+.+++.+.+.... ..|. ...+..++++++++++ | +++++|++|+|++++
T Consensus 26 ~~~~ld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~a 98 (406)
T 3cai_A 26 GWVHFDAPAGM-LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLV----N--ADPGGVVLGADRAVL 98 (406)
T ss_dssp SCEECBGGGCC-CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHH----T--CCGGGEEEESCHHHH
T ss_pred CeEEEeCCCcC-CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHh----C--CCCCeEEEeCChHHH
Confidence 35788887776 568889999998886532 1232 1245567777777775 4 366899999999999
Q ss_pred HHHHHHHh---cCCCCeEEEcCCCCCChHHHHHH----cCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCC
Q 012124 167 ILQAVLAV---CSPGDEVIIPAPFWVSYPEMARI----ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP 239 (470)
Q Consensus 167 l~~~~~~l---~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nP 239 (470)
+.+++.++ +++||+|++++|+|+++...+.. .|++++.++++++ ++.+|++.|++++++++++|++++|+||
T Consensus 99 l~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~np 177 (406)
T 3cai_A 99 LSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIE-TGELPTWQWESLISKSTRLVAVNSASGT 177 (406)
T ss_dssp HHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTT-TCCCCGGGHHHHCCTTEEEEEEESBCTT
T ss_pred HHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcc-cCCcCHHHHHHHhCCCceEEEEeCCcCC
Confidence 99999887 78999999999999987665544 7999999998733 3468999999999989999999999999
Q ss_pred cccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceee-EEEcCHH
Q 012124 240 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG-YIAGPKH 318 (470)
Q Consensus 240 tG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G-~~~~~~~ 318 (470)
||.+++ +++|.++|+++ |++||+|++|+.. .....+.. .+..+++.|+||.+| ++ +| |++++++
T Consensus 178 tG~~~~---l~~i~~l~~~~-~~~li~D~a~~~g----~~~~~~~~----~~~d~~~~s~~K~~g-~~--~G~~~~~~~~ 242 (406)
T 3cai_A 178 LGGVTD---LRAMTKLVHDV-GALVVVDHSAAAP----YRLLDIRE----TDADVVTVNAHAWGG-PP--IGAMVFRDPS 242 (406)
T ss_dssp TCBBCC---CHHHHHHHHHT-TCEEEEECTTTTT----TCCCCHHH----HCCSEEEEEGGGGTS-CS--CEEEEESCHH
T ss_pred ccccCC---HHHHHHHHHHc-CCEEEEEcccccC----CCCCCchh----cCCCEEEeehhhhcC-CC--cCeEEEEehH
Confidence 999999 78899999999 9999999999742 11112222 245689999999887 65 89 9999998
Q ss_pred HHHHHHHHhh---------hccCCCChHHHHHHHHHHhcCCC-C-----------hHHHHHHHHHHHHHHHHHHHHhccC
Q 012124 319 FVAACNKIQS---------QFTSGASSISQKAGVAALGLGYA-G-----------GEVVSKMVKAFRERRDFLVKSFGEL 377 (470)
Q Consensus 319 ~~~~l~~~~~---------~~~~~~~~~~q~a~~~~l~~~~~-~-----------~~~~~~~~~~~~~~~~~l~~~L~~~ 377 (470)
+++.+..... ....+.+...+.++..+++.... + ++++++++++++++++++.+.|+++
T Consensus 243 ~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 322 (406)
T 3cai_A 243 VMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSL 322 (406)
T ss_dssp HHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 8876654321 11233555555555555543100 0 1167889999999999999999998
Q ss_pred CCCeecCCC---ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC------CCCC---CCcEEEEeec
Q 012124 378 EGVKMSEPQ---GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD------AFGD---DTCIRISYAA 445 (470)
Q Consensus 378 ~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~------~f~~---~~~iRls~~~ 445 (470)
+|+++..+. ++ ++++.++.. +..++.+.|.+ .||.+.+|. .|+. .+++|++++.
T Consensus 323 ~~~~~~~~~~~~~~-~~~~~~~~~------------~~~~~~~~L~~-~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~ 388 (406)
T 3cai_A 323 PLVMLIGRPEAQIP-VVSFAVHKV------------PADRVVQRLAD-NGILAIANTGSRVLDVLGVNDVGGAVTVGLAH 388 (406)
T ss_dssp TTEEECCCCSSBCS-EEEEEETTB------------CHHHHHHHHHH-TTEECEECCSCHHHHHHTTTTTTCCEEEECCT
T ss_pred CCeEEcCCccccCC-EEEEEECCc------------CHHHHHHHHHH-CCcEEecCChHHHHHHcCCCCCCCeEEEEeec
Confidence 888877653 45 578888743 67888888865 599999987 3332 4789999997
Q ss_pred --CHHHHHHHHHHHHH
Q 012124 446 --SLTTLQAAVERIKK 459 (470)
Q Consensus 446 --~~~~i~~~l~~l~~ 459 (470)
+++++++++++|++
T Consensus 389 ~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 389 YSTMAEVDQLVRALAS 404 (406)
T ss_dssp TCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH
Confidence 78999999998864
No 105
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=100.00 E-value=2.3e-34 Score=283.73 Aligned_cols=319 Identities=13% Similarity=0.122 Sum_probs=243.4
Q ss_pred CCCeEEccCCCC--CCC-ChHHHHHHHHHHHHcC---CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHH
Q 012124 93 GVSVIRLAAGEP--DFD-TPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 93 ~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
|+.++||+.|.| .+. +++.+.+++.+.+.+. ...| +..+..+|++++++++ |. +++|++|+|++++
T Consensus 27 g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y-~~~~~~~l~~~la~~~----g~---~~~v~~~~g~t~a 98 (375)
T 2eh6_A 27 GKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLY-ENPWQEELAHKLVKHF----WT---EGKVFFANSGTES 98 (375)
T ss_dssp CCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTB-CCHHHHHHHHHHHHTS----SS---CEEEEEESSHHHH
T ss_pred CCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCccc-CCHHHHHHHHHHHhhc----CC---CCeEEEeCchHHH
Confidence 456799999875 455 6789999999988653 2356 5567788888888874 53 3899999999999
Q ss_pred HHHHHHH---hc---CCC-CeEEEcCCCCCChHHHHHHcCCE-------------EEEecCcCCCCCccCHHhHhhhccC
Q 012124 167 ILQAVLA---VC---SPG-DEVIIPAPFWVSYPEMARIADAT-------------PVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 167 l~~~~~~---l~---~~g-d~Vlv~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
+.++++. +. +|| |+|++++|+|+++...+...+.. +..++. +|++.|++++++
T Consensus 99 ~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~ 171 (375)
T 2eh6_A 99 VEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-------NDIDSVYKLLDE 171 (375)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-------TCHHHHHTTCCT
T ss_pred HHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-------chHHHHHHHhcC
Confidence 9999875 35 788 99999999999987765544322 233332 489999999988
Q ss_pred CceEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccc
Q 012124 227 KSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 305 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~~-~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~ 305 (470)
++++|++++++||||.+ .+.+++++|+++|++| |++||+||+|.++.+.+.. .++..+.. ...+ .||||.++
T Consensus 172 ~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~-~~~~~~~~-~~d~---~s~SK~~~- 244 (375)
T 2eh6_A 172 ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEK-DVLLIIDEVQTGIGRTGEF-YAYQHFNL-KPDV---IALAKGLG- 244 (375)
T ss_dssp TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGGTC-CCSE---EEECGGGG-
T ss_pred CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHh-CCEEEEeccccCCCCCCcc-hhhhhcCC-CCCE---EEEccccc-
Confidence 99999998899999998 4688999999999999 9999999999976543321 12232321 1222 28999998
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC
Q 012124 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 385 (470)
Q Consensus 306 ~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 385 (470)
+|+|+||+++++++++.+.......+++++++.|.++.++|+. .. +..++++++++++.+.|++++. ... +
T Consensus 245 ~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~---~~~~~~~~~~~~l~~~L~~~~~-~~~-~ 315 (375)
T 2eh6_A 245 GGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDE----VE---KLLPHVREVGNYFKEKLKELGK-GKV-K 315 (375)
T ss_dssp TTSCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHTTS-SEE-E
T ss_pred CCCCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHhc-CCc-e
Confidence 8999999999998877765533344567789999888888764 12 6777888889999999988743 222 3
Q ss_pred CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHH
Q 012124 386 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKG 460 (470)
Q Consensus 386 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~ 460 (470)
..|+++|++++. +..++++.|.+ +||.+.|+. ++++|++++. +++++++++++|+++
T Consensus 316 ~~g~~~~~~~~~-------------~~~~~~~~l~~-~gi~~~~~~----~~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 316 GRGLMLGLELER-------------ECKDYVLKALE-KGLLINCTA----GKVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp EETTEEEEECSS-------------CCHHHHHHHHH-TTEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEcC-------------cHHHHHHHHHH-CCCEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456778988864 45678888876 599999863 5789999873 899999999999875
No 106
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=100.00 E-value=2.1e-34 Score=282.60 Aligned_cols=328 Identities=15% Similarity=0.162 Sum_probs=252.1
Q ss_pred eEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCC-C-cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 96 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP-N-AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 96 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~-~-~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
+++|+.| |. .+++.+.+++.+.+. +.|+. . .+..++|+++++++ |.+.+++++++|+|+++++.+++++
T Consensus 5 ~~~~~~g-p~-~~~~~v~~a~~~~~~---~~~~~~~~~~~~~l~~~la~~~----g~~~~~~~v~~~~g~t~a~~~~~~~ 75 (366)
T 1m32_A 5 YLLLTPG-PL-TTSRTVKEAMLFDSC---TWDDDYNIGVVEQIRQQLTALA----TASEGYTSVLLQGSGSYAVEAVLGS 75 (366)
T ss_dssp CEECSSS-SC-CCCHHHHHTTCCCCC---TTSHHHHTTTHHHHHHHHHHHH----CSSSSEEEEEEESCHHHHHHHHHHH
T ss_pred cccccCC-Cc-CCCHHHHHHHhhhhc---CCCHHHHHHHHHHHHHHHHHHh----CCCCcCcEEEEecChHHHHHHHHHH
Confidence 5889999 53 477888888776421 22211 1 67889999999987 3222346899999999999999999
Q ss_pred hcCCCCeEEEcC-CCCCC-hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC--CceEEEEcCCCCCcccCCCHHHH
Q 012124 174 VCSPGDEVIIPA-PFWVS-YPEMARIADATPVILPTRISENFLLDPKVLESKLTE--KSRLLILCSPSNPTGSVYPKNLL 249 (470)
Q Consensus 174 l~~~gd~Vlv~~-p~y~~-~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~--~~~~i~l~~p~nPtG~~~s~~~~ 249 (470)
++++||+|++.+ ++|+. +...++..|++++.++++. ++.+|++.|++++++ ++++|++++++||||.+++ +
T Consensus 76 ~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~---l 150 (366)
T 1m32_A 76 ALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGE--VARPDVQAIDAILNADPTISHIAMVHSETTTGMLNP---I 150 (366)
T ss_dssp SCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCT--TSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC---H
T ss_pred hcCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecC---H
Confidence 999999988776 55544 5567788899999999864 345899999999964 5789999999999999999 7
Q ss_pred HHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh--
Q 012124 250 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-- 327 (470)
Q Consensus 250 ~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~-- 327 (470)
++|.++|++| |++||+|++|+.... ... +.. .+.++++.|+||.++ .+.++||+++++++++.+....
T Consensus 151 ~~i~~l~~~~-~~~li~Dea~~~~~~----~~~---~~~-~~~di~~~s~~K~~~-~~~g~G~~~~~~~~~~~~~~~~~~ 220 (366)
T 1m32_A 151 DEVGALAHRY-GKTYIVDAMSSFGGI----PMD---IAA-LHIDYLISSANKCIQ-GVPGFAFVIAREQKLAACKGHSRS 220 (366)
T ss_dssp HHHHHHHHHH-TCEEEEECTTTTTTS----CCC---TTT-TTCSEEEEESSSTTC-CCSSEEEEEEEHHHHTTCTTCCSC
T ss_pred HHHHHHHHHc-CCEEEEECCccccCc----Ccc---ccc-cCccEEEecCccccc-CCCceEEEEECHHHHHhhcCCCCC
Confidence 8999999999 999999999985322 112 221 246699999999874 3345799999998876653310
Q ss_pred ----------------hhccCCCChHHHHHHHHHHhcCCCChHH--HHHHHHHHHHHHHHHHHHhccCCCCeecCC---C
Q 012124 328 ----------------SQFTSGASSISQKAGVAALGLGYAGGEV--VSKMVKAFRERRDFLVKSFGELEGVKMSEP---Q 386 (470)
Q Consensus 328 ----------------~~~~~~~~~~~q~a~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~---~ 386 (470)
....++++...+.++.++++. ..++ +++++++++++++++.+.|+++ |+.+..+ .
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~ 296 (366)
T 1m32_A 221 LSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKE---LAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDELH 296 (366)
T ss_dssp STTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH---HHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGB
T ss_pred ccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHH---HHHccCHhHHHHHHHHHHHHHHHHHHHC-CCeeccCchhc
Confidence 011246777877777777764 2344 6788899999999999999988 8876654 3
Q ss_pred ceEEEeeeccC--ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012124 387 GAFYLFIDFST--YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 387 ~g~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~ 462 (470)
+++++|+++++ .. +..++.+.|.++ ||.+.||..| .++++|++++. +++++++++++|+++++
T Consensus 297 ~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~-gi~v~~~~~~-~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 363 (366)
T 1m32_A 297 SPIITAFYSPEDPQY-----------RFSEFYRRLKEQ-GFVIYPGKVS-QSDCFRIGNIGEVYAADITALLTAIRTAMY 363 (366)
T ss_dssp CSSEEEEECCCCTTC-----------CHHHHHHHHHHT-TEECEECCCS-SSCEEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred CceEEEEEcCccCCC-----------CHHHHHHHHHHC-CEEEECCcCC-CCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 67779999874 22 678899988876 9999999876 46899999996 78999999999999876
Q ss_pred hh
Q 012124 463 TL 464 (470)
Q Consensus 463 ~~ 464 (470)
++
T Consensus 364 ~~ 365 (366)
T 1m32_A 364 WT 365 (366)
T ss_dssp TC
T ss_pred hc
Confidence 54
No 107
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=100.00 E-value=1.7e-34 Score=289.28 Aligned_cols=337 Identities=17% Similarity=0.145 Sum_probs=250.3
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCC--------cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecCh
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN--------AGTLELRSAICHKLKEENGLSYTPDQILVSNGA 163 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~--------~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~ 163 (470)
.+++.+.|..+.+. ++|+.+.+++.+.+.. ...|+.+ .+..+..+.+.+.+.+.+| +++++|++|+|+
T Consensus 19 ~~~~~iyld~~~~~-~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~gg 94 (423)
T 3lvm_A 19 AMKLPIYLDYSATT-PVDPRVAEKMMQFMTM-DGTFGNPASRSHRFGWQAEEAVDIARNQIADLVG--ADPREIVFTSGA 94 (423)
T ss_dssp -CCSSEECBTTTCC-CCCHHHHHHHTTSSST-TSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHT--CCGGGEEEESSH
T ss_pred ccCCCEeecCCCcC-CCCHHHHHHHHHHHhh-cccccCCCccccchhHHHHHHHHHHHHHHHHHcC--CCCCeEEEeCCh
Confidence 45677888887776 5688888888887651 0112111 1122333444444444445 467899999999
Q ss_pred HHHHHHHHHHhcC----CCCeEEEcCCCCCChHHHH---HHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCC
Q 012124 164 KQSILQAVLAVCS----PGDEVIIPAPFWVSYPEMA---RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSP 236 (470)
Q Consensus 164 ~~al~~~~~~l~~----~gd~Vlv~~p~y~~~~~~~---~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p 236 (470)
++++.++++++.+ +||+|++++|+|+++...+ ...|++++.++++. ++.+|++.|++++++++++|++++|
T Consensus 95 t~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~ 172 (423)
T 3lvm_A 95 TESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR--NGIIDLKELEAAMRDDTILVSIMHV 172 (423)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT--TSCCCHHHHHHHCCTTEEEEECCSB
T ss_pred HHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCC--CCccCHHHHHHhcCCCcEEEEEeCC
Confidence 9999999998874 8999999999999988776 44599999999875 4568999999999999999999999
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC
Q 012124 237 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 316 (470)
Q Consensus 237 ~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~ 316 (470)
+||||.+++ +++|+++|++| |++||+||+|+.... ... ... .+..+++.||||.+|.+| +||++++
T Consensus 173 ~nptG~~~~---l~~i~~l~~~~-~~~li~Dea~~~~~~----~~~---~~~-~~~di~~~s~sK~~g~~g--~G~~~~~ 238 (423)
T 3lvm_A 173 NNEIGVVQD---IAAIGEMCRAR-GIIYHVDATQSVGKL----PID---LSQ-LKVDLMSFSGHKIYGPKG--IGALYVR 238 (423)
T ss_dssp CTTTCBBCC---HHHHHHHHHHH-TCEEEEECTTTTTTS----CCC---TTT-SCCSEEEEESTTTTSCSS--CEEEEEC
T ss_pred CCCCccccC---HHHHHHHHHHc-CCEEEEEhhhhcCCC----CcC---hhh-cCCCEEEechHHhcCCCC--eEEEEEe
Confidence 999999999 78899999999 999999999875211 111 222 345699999999887555 8999998
Q ss_pred HHHHHHHHHHhh-------hccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc--
Q 012124 317 KHFVAACNKIQS-------QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG-- 387 (470)
Q Consensus 317 ~~~~~~l~~~~~-------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~-- 387 (470)
++.++.+..... ....+.+...+.++..++.. ..+++++++++++++++.+.+.|++++|+.+..+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 315 (423)
T 3lvm_A 239 RKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRI---AKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHG 315 (423)
T ss_dssp BTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTB
T ss_pred ccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCcccc
Confidence 776655443321 22345567777777677664 245588899999999999999999998988876553
Q ss_pred -eEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEeec--
Q 012124 388 -AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISYAA-- 445 (470)
Q Consensus 388 -g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-------------------~~~iRls~~~-- 445 (470)
+.++++.++.. +..++.+.|.+ |.+.+|..|.. ++++|++++.
T Consensus 316 ~~~~~~~~~~~~------------~~~~l~~~l~~---i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~ 380 (423)
T 3lvm_A 316 APNILNVSFNYV------------EGESLIMALKD---LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFT 380 (423)
T ss_dssp CTTEEEEEETTS------------CHHHHHHHTTT---EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTC
T ss_pred CCCeEEEEeCCC------------CHHHHHHHHhh---heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCC
Confidence 22345555432 67788877643 89999877644 3789999995
Q ss_pred CHHHHHHHHHHHHHHHHhhCC
Q 012124 446 SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 446 ~~~~i~~~l~~l~~~l~~~~~ 466 (470)
+++++++++++|++++++++.
T Consensus 381 t~e~i~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 381 TEEEIDYTIELVRKSIGRLRD 401 (423)
T ss_dssp CHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhhc
Confidence 889999999999999987654
No 108
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=5.7e-34 Score=282.53 Aligned_cols=323 Identities=13% Similarity=0.091 Sum_probs=247.1
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCC-------
Q 012124 105 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSP------- 177 (470)
Q Consensus 105 ~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~------- 177 (470)
..++++.+.+++.+.+......+....+..++++.+++++.+.+|. ++++|++|+|+++++..++.++..+
T Consensus 39 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~ 116 (397)
T 3f9t_A 39 CSNVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNN--KDAYGHIVSGGTEANLMALRCIKNIWREKRRK 116 (397)
T ss_dssp CCCCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTC--TTCEEEEESCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCC--CCCCEEEecCcHHHHHHHHHHHHHHHHhhhhh
Confidence 3345678888988887654444433336678888888888887774 6789999999999999999998776
Q ss_pred ------CCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHHHH
Q 012124 178 ------GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLD 250 (470)
Q Consensus 178 ------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~ 250 (470)
||+|++++|+|+++...++..|++++.+|++. ++.+|++.|++++++ +++++++++|+||||.+.+ ++
T Consensus 117 ~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~ 191 (397)
T 3f9t_A 117 GLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKE--DYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDN---IE 191 (397)
T ss_dssp TCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCT--TSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCC---HH
T ss_pred cccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCC--CCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCC---HH
Confidence 99999999999999999999999999999864 456899999999987 8999999999999999998 88
Q ss_pred HHHHHHHhCCCEEEEEeccccccccCCCCc-cc------ccccCCCCCceEEEeccCcccccccceeeEEEcCHH-HHHH
Q 012124 251 EIARIVAKHPRLLVLSDEIYEHIIYAPATH-TS------FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAA 322 (470)
Q Consensus 251 ~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~------~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~-~~~~ 322 (470)
+|.++|++| |++||+||+|+.+.++.... .. ...+. . +..+++.|++|.++ +|.|+||++++++ +.+.
T Consensus 192 ~i~~l~~~~-~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~s~~K~~~-~~~~~g~~~~~~~~~~~~ 267 (397)
T 3f9t_A 192 ELSKIAKEN-NIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFS-L-GVDSITIDPHKMGH-CPIPSGGILFKDIGYKRY 267 (397)
T ss_dssp HHHHHHHHH-TCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGG-G-TCSEEECCTTTTTC-CCSSCEEEEESSGGGGGG
T ss_pred HHHHHHHHh-CCeEEEEccccchhhhhccccccccccccccccc-c-cCCeEEEccccccC-CCCCceEEEEeCHHHHHh
Confidence 899999999 99999999998765432111 00 11111 1 45688999999885 7889999987654 4433
Q ss_pred HHHHhhhcc-----------CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEE
Q 012124 323 CNKIQSQFT-----------SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYL 391 (470)
Q Consensus 323 l~~~~~~~~-----------~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~ 391 (470)
+........ .+.+.+.+.++...+. ...+++..++++++++++.+.|+++ |+.+..+..+.++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~ 341 (397)
T 3f9t_A 268 LDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLG-----REGQRKIVNECMENTLYLYKKLKEN-NFKPVIEPILNIV 341 (397)
T ss_dssp TCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEE
T ss_pred hccCCccccCCCccccccccccchHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEcCCCccEE
Confidence 322111111 1124456666666554 4567778888889999999999988 8875544445556
Q ss_pred eeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012124 392 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~ 462 (470)
|+.++ +..++.+.|.++ ||.+.+|.. ++++|++++. +++++++++++|+++++
T Consensus 342 ~~~~~--------------~~~~~~~~l~~~-gi~v~~~~~---~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 342 AIEDE--------------DYKEVCKKLRDR-GIYVSVCNC---VKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp EEECT--------------THHHHHHHHHHT-TCBCEECSS---SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred EEEeC--------------CHHHHHHHHHhC-CeEEeccCC---CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 77765 456788888776 999999763 5899999995 89999999999998764
No 109
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=100.00 E-value=9.7e-34 Score=279.37 Aligned_cols=323 Identities=14% Similarity=0.116 Sum_probs=240.3
Q ss_pred CChHHHHHHHHHHHHcCCC----CCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc----CCC
Q 012124 107 DTPVLIAEAGINAIREGFT----RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC----SPG 178 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~----~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~----~~g 178 (470)
++|+.+.+++.+.+.+... .|....+..++.+.+.+++.+.+|. ++++|++|+|+++++.++++++. ++|
T Consensus 11 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~i~~~~g~~~a~~~~~~~~~~~~~~~g 88 (382)
T 4hvk_A 11 PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNG--GGGTVVFTSGATEANNLAIIGYAMRNARKG 88 (382)
T ss_dssp CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTC--TTEEEEEESSHHHHHHHHHHHHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCC--CcCeEEEECCchHHHHHHHHHhhhhhcCCC
Confidence 4578899999998865211 1211123345555666666665664 67899999999999999999987 999
Q ss_pred CeEEEcCCCCCChHHHHHH---cCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHH
Q 012124 179 DEVIIPAPFWVSYPEMARI---ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARI 255 (470)
Q Consensus 179 d~Vlv~~p~y~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~ 255 (470)
|+|++++|+|+++...+.. .|++++.++++. ++.+|++.|++++++++++|++++|+||||.+++ +++|.++
T Consensus 89 d~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~l 163 (382)
T 4hvk_A 89 KHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK--YGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQP---VEEISEV 163 (382)
T ss_dssp CEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCT--TSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCC---HHHHHHH
T ss_pred CEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCC--CCCcCHHHHHHHhccCceEEEEECCCCCceeeCC---HHHHHHH
Confidence 9999999999998776544 699999999874 3468999999999999999999999999999999 7789999
Q ss_pred HHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHH-------hh
Q 012124 256 VAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-------QS 328 (470)
Q Consensus 256 ~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~-------~~ 328 (470)
|++| |+ ||+|++|+... ....+.. .+..+++.|+||.+|.+| +|+++++++. .+... ..
T Consensus 164 ~~~~-~~-li~D~a~~~~~----~~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~--~~~~~~~~~~~~~~ 229 (382)
T 4hvk_A 164 LAGK-AA-LHIDATASVGQ----IEVDVEK----IGADMLTISSNDIYGPKG--VGALWIRKEA--KLQPVILGGGQENG 229 (382)
T ss_dssp HSSS-SE-EEEECTTTBTT----BCCCHHH----HTCSEEEEESGGGTSCTT--CEEEEEETTC--CCCCSSCSSCTGGG
T ss_pred HHHc-CE-EEEEhHHhcCC----CCCCchh----cCCCEEEEeHHHhcCCCc--eEEEEEcCcc--CcCcccccCCCcCc
Confidence 9999 99 99999987421 1111111 245699999999887555 6777765543 11111 11
Q ss_pred hccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc---eEEEeeeccCccCCcccC
Q 012124 329 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG---AFYLFIDFSTYYGSEAEG 405 (470)
Q Consensus 329 ~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~ 405 (470)
......+...+.++..++.. ..++++++++.++++++++.+.|++++|+.+..+.+ +.++++.++..
T Consensus 230 ~~~~~~~~~~~~~~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 299 (382)
T 4hvk_A 230 LRSGSENVPSIVGFGKAAEI---TAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI------- 299 (382)
T ss_dssp TSCSCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTC-------
T ss_pred cccCCcCHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECCC-------
Confidence 12334566777777777664 256788999999999999999999988888776543 23466666643
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 406 FGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 406 ~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-------------------~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
+..++.+.|.++ ||.+.+|..|.. ++++|++++. +++++++++++|+++++++
T Consensus 300 -----~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~ 373 (382)
T 4hvk_A 300 -----EGESIVLSLDMA-GIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERL 373 (382)
T ss_dssp -----CHHHHHHHHHHT-TCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHC-CEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 678888888665 999999987653 4789999995 8899999999999999876
Q ss_pred CC
Q 012124 465 RP 466 (470)
Q Consensus 465 ~~ 466 (470)
+.
T Consensus 374 ~~ 375 (382)
T 4hvk_A 374 RS 375 (382)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 110
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=100.00 E-value=3.1e-33 Score=275.40 Aligned_cols=333 Identities=16% Similarity=0.090 Sum_probs=241.8
Q ss_pred HhcCC-CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 90 AQAGV-SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 90 ~~~~~-~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
...|. ++||++.+.++.++++.+++++. .|. +...+.+.+++++.+.+|.+ +++++++++|+++++.
T Consensus 23 ~~~g~~~v~~~~~~~~~~~~~~~v~~a~~--------~~~---~~~~~~~~~~~~~a~~~g~~-~~~~~~~~~ggt~a~~ 90 (374)
T 2aeu_A 23 NEKGRDALYDLSGLSGGFLIDEKDKALLN--------TYI---GSSYFAEKVNEYGLKHLGGD-ENDKCVGFNRTSSAIL 90 (374)
T ss_dssp HHTCGGGCEECSSCCCCCCCCHHHHHHHT--------STT---HHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHHH
T ss_pred hccCccceeeecccCCCCCCCHHHHHHHH--------Hhc---CchHHHHHHHHHHHHHhCCC-CcceEEEEcChHHHHH
Confidence 45677 78999999988888999988875 222 12456677887777777753 4578999999999999
Q ss_pred HHHHHhcCCCCeEEEcCCCCCChHH---HHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceE-EEEcCCCCCcccCC
Q 012124 169 QAVLAVCSPGDEVIIPAPFWVSYPE---MARIADATPVILPTRISENFLLDPKVLESKLTEKSRL-LILCSPSNPTGSVY 244 (470)
Q Consensus 169 ~~~~~l~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~-i~l~~p~nPtG~~~ 244 (470)
.++.++ +||+|++++|+|+++.. .++..|++++.+ .|++.++++ ++++++ |++++||||||.
T Consensus 91 ~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v---------~d~~~l~~~-~~~~~~~v~~~~p~nptG~-- 156 (374)
T 2aeu_A 91 ATILAL--KPKKVIHYLPELPGHPSIERSCKIVNAKYFES---------DKVGEILNK-IDKDTLVIITGSTMDLKVI-- 156 (374)
T ss_dssp HHHHHH--CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE---------SCHHHHHTT-CCTTEEEEEECBCTTSCBC--
T ss_pred HHHHhC--CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe---------CCHHHHHhc-CCCccEEEEEccCCCCCCC--
Confidence 999988 99999999999987654 677889999887 278999988 778999 889999999997
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHH
Q 012124 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 324 (470)
Q Consensus 245 s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~ 324 (470)
+..++++|.++|++| |++||+||+|+.+..+.....+...+ +.+++++||||.+ +|+|+||+++++++++.+.
T Consensus 157 ~~~~l~~i~~l~~~~-~~~li~De~~~~~~~~~~~~~~~~~~----~~di~~~S~sK~l--~g~~~G~~~~~~~~~~~l~ 229 (374)
T 2aeu_A 157 ELENFKKVINTAKNK-EAIVFVDDASGARVRLLFNQPPALKL----GADLVVTSTDKLM--EGPRGGLLAGKKELVDKIY 229 (374)
T ss_dssp CHHHHHHHHHHHHHH-TCCEEEECTTHHHHHHHTTCCCHHHH----TCSEEEEETTSSS--SSCSCEEEEEEHHHHHHHH
T ss_pred CcccHHHHHHHHHHc-CCEEEEECCcccccccccccCCcccc----CCcEEEecCcccc--cCcceEEEEECHHHHHHHH
Confidence 778899999999999 99999999998764100001111112 3458999999986 5689999999999999998
Q ss_pred HHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHH----HHHHHHHhccC---CCCeec-CCCceEEEeeecc
Q 012124 325 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER----RDFLVKSFGEL---EGVKMS-EPQGAFYLFIDFS 396 (470)
Q Consensus 325 ~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~----~~~l~~~L~~~---~g~~~~-~~~~g~~~~~~~~ 396 (470)
.....+..+++++.|.++..+++... .+.+++..+..+.. ++.+.+.|..+ +|+.+. .+.+.++.|.+++
T Consensus 230 ~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~~ 307 (374)
T 2aeu_A 230 IEGTKFGLEAQPPLLAGIYRALKNFN--LERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKD 307 (374)
T ss_dssp HHHHTTTCBCCHHHHHHHHHHHHHCC--HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESS
T ss_pred HhhccccCCCCHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEEEeeccc
Confidence 87766666788999999988887621 21222222222222 46666666654 356654 4555555565443
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-CCCcEEEEeec-C--HHHHHHHHHHHHHHHHhhC
Q 012124 397 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-DDTCIRISYAA-S--LTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~-~~~~iRls~~~-~--~~~i~~~l~~l~~~l~~~~ 465 (470)
.... ..+..+++..+++++||.+.||..|. .++++||+++. + +.+++..++.|+++++++.
T Consensus 308 ~~~~--------~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~ 372 (374)
T 2aeu_A 308 DTIN--------IKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAF 372 (374)
T ss_dssp HHHH--------HHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHT
T ss_pred cccc--------ccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 2100 00123366667766799999998774 35699999985 2 2347888888888887764
No 111
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=100.00 E-value=5.8e-34 Score=278.78 Aligned_cols=332 Identities=14% Similarity=0.067 Sum_probs=250.4
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 174 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l 174 (470)
.+++|+.+.+. .+++.+.+++.+.+. .|.+..|..++++.+++++.+.+| +++++|++|+|+++++..+++.+
T Consensus 14 ~~i~l~~~~~~-~~~~~v~~a~~~~~~----~~~~~~g~~~~~~~~~~~l~~~~g--~~~~~v~~~~g~t~a~~~~~~~~ 86 (359)
T 1svv_A 14 KPYSFVNDYSV-GMHPKILDLMARDNM----TQHAGYGQDSHCAKAARLIGELLE--RPDADVHFISGGTQTNLIACSLA 86 (359)
T ss_dssp -CEECSCSCSS-CCCHHHHHHHHHHTT----CCCCSTTCSHHHHHHHHHHHHHHT--CTTSEEEEESCHHHHHHHHHHHH
T ss_pred eeEEecCCCcC-CCCHHHHHHHHHHHh----hccccccccHHHHHHHHHHHHHhC--CCCccEEEeCCchHHHHHHHHHH
Confidence 46999997766 678889999988764 476777889999999999999888 46789999999999999999999
Q ss_pred cCCCCeEEEcCCCCCChHH--HHHHcCCEEEEecCcCCCCCccCHHhHhhhccCC-------ceEEEEcCCCCCcccCCC
Q 012124 175 CSPGDEVIIPAPFWVSYPE--MARIADATPVILPTRISENFLLDPKVLESKLTEK-------SRLLILCSPSNPTGSVYP 245 (470)
Q Consensus 175 ~~~gd~Vlv~~p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~-------~~~i~l~~p~nPtG~~~s 245 (470)
.++||+|++++|+|+++.. .++..|++++.+|.+ ++.+|++.|++.++++ +++|++++| ||||.+++
T Consensus 87 ~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~ 162 (359)
T 1svv_A 87 LRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYT 162 (359)
T ss_dssp CCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCC
T ss_pred hCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC---CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecC
Confidence 9999999999999998887 478899999999974 4669999999999655 889999988 79999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHH
Q 012124 246 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 325 (470)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~ 325 (470)
.+++++|+++|++| |++||+||+|..+.++..+ .....+.-.....+++.|++|..+ + ..+|++++++++++.+..
T Consensus 163 ~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~-~~~~~~~~~~~~d~~~~s~~K~g~-~-~~~g~l~~~~~~~~~~~~ 238 (359)
T 1svv_A 163 KQELEDISASCKEH-GLYLFLDGARLASALSSPV-NDLTLADIARLTDMFYIGATKAGG-M-FGEALIILNDALKPNARH 238 (359)
T ss_dssp HHHHHHHHHHHHHH-TCEEEEECTTHHHHHTSTT-CCCCHHHHHHHCSEEEEECTTTTC-S-SCEEEEECSGGGCTTHHH
T ss_pred HHHHHHHHHHHHHh-CCEEEEEccchhhhhcCCC-cchhhhhhhhcCCEEEEecccCCC-C-CceEEEEEcccHHHHHHH
Confidence 99999999999999 9999999999654332111 111100000123378889999743 3 568999999988877765
Q ss_pred Hhhhcc--CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcc
Q 012124 326 IQSQFT--SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEA 403 (470)
Q Consensus 326 ~~~~~~--~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 403 (470)
...... ...+.....++..++. +...++++++++++++++.+.| +.+|+++..+.+++++|++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~------- 305 (359)
T 1svv_A 239 LIKQRGALMAKGWLLGIQFEVLMK-----DNLFFELGAHSNKMAAILKAGL-EACGIRLAWPSASNQLFPILE------- 305 (359)
T ss_dssp HHHHTTCCCTTTHHHHHHHHHHTS-----TTHHHHHHHHHHHHHHHHHHHH-HHTTCCBSSCCSSSEECBEEE-------
T ss_pred HHhcCCcccccchhhHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHh-ccCCeEEccCCccceEEEEcC-------
Confidence 432111 1222222233334444 2345778889999999999999 566888887888888998764
Q ss_pred cCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 404 EGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 404 ~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
.+++++|++++||.+.+. ....++++|++++. +++++++++++|+++++++
T Consensus 306 ---------~~~~~~l~~~~gi~v~~~-~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 306 ---------NTMIAELNNDFDMYTVEP-LKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp ---------HHHHHHHTTTEECEEEEE-ETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred ---------HHHHHHHHHhcCEEEEec-ccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 367788876658988321 11234689998774 8999999999999887653
No 112
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=100.00 E-value=1.8e-34 Score=281.62 Aligned_cols=318 Identities=15% Similarity=0.144 Sum_probs=242.1
Q ss_pred CCChHHHHHHHHHHHHcCCCCCC-CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEc
Q 012124 106 FDTPVLIAEAGINAIREGFTRYT-PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIP 184 (470)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~~~~y~-~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~ 184 (470)
.++|+.+++++.+.+.. +.|. ...+..++|+++++++ |.+.++++|++|+|+++++.++++++++ |+|+++
T Consensus 9 ~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~----g~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~~ 80 (353)
T 2yrr_A 9 TPIPERVQKALLRPMRG--HLDPEVLRVNRAIQERLAALF----DPGEGALVAALAGSGSLGMEAGLANLDR--GPVLVL 80 (353)
T ss_dssp CCCCHHHHGGGGSCCCC--TTCHHHHHHHHHHHHHHHHHH----CCCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEEE
T ss_pred CCCCHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHh----CCCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEEE
Confidence 34578888887766532 2221 1234566677666664 6544578999999999999999998876 899999
Q ss_pred CCCCCCh--HHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC
Q 012124 185 APFWVSY--PEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 261 (470)
Q Consensus 185 ~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~ 261 (470)
+|+|+++ ...++..|++++.++++. ++.+|++.|++.+++ ++++|++++|+||||.+++ +++|.++|++| |
T Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~-~ 154 (353)
T 2yrr_A 81 VNGAFSQRVAEMAALHGLDPEVLDFPP--GEPVDPEAVARALKRRRYRMVALVHGETSTGVLNP---AEAIGALAKEA-G 154 (353)
T ss_dssp ECSHHHHHHHHHHHHTTCCEEEEECCT--TSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC---HHHHHHHHHHH-T
T ss_pred cCCCchHHHHHHHHHcCCceEEEeCCC--CCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecC---HHHHHHHHHHc-C
Confidence 9999875 455678999999999864 345899999999987 8999999999999999999 77899999999 9
Q ss_pred EEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccc-ccccceeeEEEcCHHHHHHHH-------------HH-
Q 012124 262 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACN-------------KI- 326 (470)
Q Consensus 262 ~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~-~~~G~r~G~~~~~~~~~~~l~-------------~~- 326 (470)
++||+|++|+... ...++..+ +..+++.|++|.+ +.+| +||+++++++++.+. ..
T Consensus 155 ~~li~D~a~~~~~----~~~~~~~~----~~d~~~~s~~K~~~~~~g--~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 224 (353)
T 2yrr_A 155 ALFFLDAVTTLGM----LPFSMRAM----GVDYAFTGSQKCLSAPPG--LAPIAASLEARKAFTGKRGWYLDLARVAEHW 224 (353)
T ss_dssp CEEEEECTTTTTT----SCCCHHHH----TCSEEECCTTSTTCCCSS--CEEEEECHHHHHHCCCCSCSTTCHHHHHHHH
T ss_pred CeEEEEcCccccc----cccccccc----CceEEEecCcccccCCCc--eEEEEECHHHHHHhccCCCccccHHHHhhhh
Confidence 9999999996321 11222222 3358899999966 4345 799999999887654 10
Q ss_pred -hhhccCCCChHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHHHHHhccCCCCeecCCC--ceEEEeeeccCccCCc
Q 012124 327 -QSQFTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGELEGVKMSEPQ--GAFYLFIDFSTYYGSE 402 (470)
Q Consensus 327 -~~~~~~~~~~~~q~a~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~g~~~~~~~~~~~~~~ 402 (470)
......+.+...+.++.++++. ..+. +++++++++++++++.+.|+++ |+++..+. +++++|+++|...
T Consensus 225 ~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~--- 297 (353)
T 2yrr_A 225 ERGGYHHTTPVLLHYALLEALDL---VLEEGVAARERRAREVYAWVLEELKAR-GFRPYPKASPLPTVLVVRPPEGV--- 297 (353)
T ss_dssp TTCCCSSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCTTEEEEECCTTC---
T ss_pred hcCCCCCCCCHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHC-CCccccCccCCCeEEEEECCCCC---
Confidence 1223345677777777777764 1333 7788999999999999999988 88877654 5666788887432
Q ss_pred ccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHH-HHHHHHHHHHHh
Q 012124 403 AEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQ-AAVERIKKGLLT 463 (470)
Q Consensus 403 ~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~-~~l~~l~~~l~~ 463 (470)
+..++.+.|.++ ||.+.+|..|..++++|++++. ++++++ +++++|+++++.
T Consensus 298 --------~~~~~~~~l~~~-gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 298 --------DADRLVRALYAE-GVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp --------CHHHHHHHHHHT-TEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred --------CHHHHHHHHHHC-CEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 678899988776 9999999877778899999953 778888 999999998764
No 113
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=1.1e-33 Score=280.51 Aligned_cols=326 Identities=17% Similarity=0.166 Sum_probs=243.7
Q ss_pred cCCCeEEccCCCCCCC---ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPDFD---TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~---~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|++.+.+... .++.+.+++.+.+.+....+ ..+..+.++.+++++.+..| ++++++|+|+++++.
T Consensus 34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~la~~~g----~~~v~~~~~gt~a~~ 107 (392)
T 3ruy_A 34 EGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTS--RAFHSDQLGPWYEKVAKLTN----KEMVLPMNTGAEAVE 107 (392)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCC--TTSEETTHHHHHHHHHHHHT----CSEEEEESSHHHHHH
T ss_pred CCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccc--cccCCHHHHHHHHHHHHhcC----CCEEEEeCcHHHHHH
Confidence 4567899998865544 47899999999886532221 11223344444444444444 579999999999999
Q ss_pred HHHHHhcCC----------CCeEEEcCCCCCChHHHHHHcCCE-------------EEEecCcCCCCCccCHHhHhhhcc
Q 012124 169 QAVLAVCSP----------GDEVIIPAPFWVSYPEMARIADAT-------------PVILPTRISENFLLDPKVLESKLT 225 (470)
Q Consensus 169 ~~~~~l~~~----------gd~Vlv~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~~~l~~~l~ 225 (470)
.+++.+..+ +|.|+++.|+|+++...+...+.. +..++. .|++.|+++++
T Consensus 108 ~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~ 180 (392)
T 3ruy_A 108 TAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY-------GDLEALKAAIT 180 (392)
T ss_dssp HHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT-------TCHHHHHHHCC
T ss_pred HHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc-------ccHHHHHHHhc
Confidence 999987644 689999999999887666554332 444443 28999999999
Q ss_pred CCceEEEEcCCCCCcccCCCHHH-HHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccc
Q 012124 226 EKSRLLILCSPSNPTGSVYPKNL-LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 304 (470)
Q Consensus 226 ~~~~~i~l~~p~nPtG~~~s~~~-~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~ 304 (470)
+++++|++++|+||||.+++.++ +++|+++|++| |++||+||+|.++.+.+... ...... .... +.||||.++
T Consensus 181 ~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~-~~~li~De~~~~~~~~g~~~-~~~~~~-~~~d---~~~~SK~l~ 254 (392)
T 3ruy_A 181 PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKE-NVLFVADEIQTGLGRTGKVF-ACDWDN-VTPD---MYILGKALG 254 (392)
T ss_dssp TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTT-TCEEEEECTTTTTTTTSSSS-GGGGGT-CCCS---EEEECGGGG
T ss_pred cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeechhCCCccccch-hhhccC-CCCC---EEEEchhhh
Confidence 89999999999999999996555 99999999999 99999999998876554321 111111 1122 347899986
Q ss_pred ccc-ceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC--CCCe
Q 012124 305 MTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL--EGVK 381 (470)
Q Consensus 305 ~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g~~ 381 (470)
+| +|+||+++++++++.+.......+++.+++.+.++.++++. .+. ++.++.++++++++.+.|+++ +.+.
T Consensus 255 -gG~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~ 328 (392)
T 3ruy_A 255 -GGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEV----LEE-EKLTERSLQLGEKLVGQLKEIDNPMIT 328 (392)
T ss_dssp -TTTSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHH----HHH-TTHHHHHHHHHHHHHHHHTTCCCTTEE
T ss_pred -CChhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHH----HHh-hhHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 67 99999999999988877666666788999999999999875 222 677888899999999999886 3345
Q ss_pred ecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 012124 382 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKK 459 (470)
Q Consensus 382 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~ 459 (470)
...+.+++ +++.++. +..++.+.|.+ +||.+.||. ++++|++++. +++++++++++|++
T Consensus 329 ~~~~~g~~-~~~~~~~-------------~~~~l~~~l~~-~gi~v~~~~----~~~iRi~~~~~~~~~~i~~~~~~l~~ 389 (392)
T 3ruy_A 329 EVRGKGLF-IGIELNE-------------PARPYCEQLKA-AGLLCKETH----ENVIRIAPPLVISEEDLEWAFQKIKA 389 (392)
T ss_dssp EEEEETTE-EEEEESS-------------CSHHHHHHHHT-TTEECCCBT----TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEeeeeE-EEEEEcc-------------hHHHHHHHHHH-CCcEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 55555555 5556753 45688888875 599999875 5799999654 89999999999998
Q ss_pred HH
Q 012124 460 GL 461 (470)
Q Consensus 460 ~l 461 (470)
++
T Consensus 390 ~l 391 (392)
T 3ruy_A 390 VL 391 (392)
T ss_dssp HH
T ss_pred Hh
Confidence 76
No 114
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=100.00 E-value=5.9e-34 Score=283.08 Aligned_cols=329 Identities=14% Similarity=0.125 Sum_probs=244.7
Q ss_pred cCCCeEEccCC---CCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAG---EPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g---~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||+.+ .+.-..++.+.+++.+++..... +. .....++++.+++.+.+.+| .++|++|+|+++++.
T Consensus 38 ~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~-~~-~~~~~~~~~~l~~~la~~~g----~~~v~~~~gg~~a~~ 111 (397)
T 2ord_A 38 KGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIH-CS-NLFWNRPQMELAELLSKNTF----GGKVFFANTGTEANE 111 (397)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSC-CC-TTSEEHHHHHHHHHHHHTTT----SCEEEEESSHHHHHH
T ss_pred CCCEEEECCccccccccCCCCHHHHHHHHHHHHhccc-Cc-cccCCHHHHHHHHHHHHhcC----CCeEEEeCCHHHHHH
Confidence 35567999887 33222578899999998876322 11 11223566666666666555 479999999999999
Q ss_pred HHHHHhcC------C-CCeEEEcCCCCCChHH-HHHHcCCE------------EEEecCcCCCCCccCHHhHhhhccCCc
Q 012124 169 QAVLAVCS------P-GDEVIIPAPFWVSYPE-MARIADAT------------PVILPTRISENFLLDPKVLESKLTEKS 228 (470)
Q Consensus 169 ~~~~~l~~------~-gd~Vlv~~p~y~~~~~-~~~~~g~~------------~~~v~~~~~~~~~~d~~~l~~~l~~~~ 228 (470)
.+++++.. + ++.|++.+|+|++... .++..|.+ ++.++. .|++.|++++++++
T Consensus 112 ~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~l~~~~ 184 (397)
T 2ord_A 112 AAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-------NNVEDLRRKMSEDV 184 (397)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------TCHHHHHHHCCTTE
T ss_pred HHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------CCHHHHHHHhhcCe
Confidence 99998763 5 4789999999977554 77778876 667765 28999999998899
Q ss_pred eEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccc
Q 012124 229 RLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 307 (470)
Q Consensus 229 ~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G 307 (470)
++|++++|+||||. +++.+++++|+++|++| |++||+||+|.++.+.+. ..++..+... .. +.||||.++ +|
T Consensus 185 ~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~-~~~li~De~~~~~~~~g~-~~~~~~~~~~-~d---~~s~sK~~~-~G 257 (397)
T 2ord_A 185 CAVFLEPIQGESGIVPATKEFLEEARKLCDEY-DALLVFDEVQCGMGRTGK-LFAYQKYGVV-PD---VLTTAKGLG-GG 257 (397)
T ss_dssp EEEEECSEECTTTCEECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSS-SSHHHHHTCC-CS---EEEECGGGG-TT
T ss_pred EEEEEecccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEecccCCccCcc-chhhhhhCCC-CC---eeeeccccC-CC
Confidence 99999999999999 99999999999999999 999999999998765543 2222223211 12 238899998 99
Q ss_pred ceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC----CCCeec
Q 012124 308 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EGVKMS 383 (470)
Q Consensus 308 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~ 383 (470)
+|+||++++++++ .+.......+++.+++.|.++.++|+.. .+ +++++.++++++++.+.|+++ +.+...
T Consensus 258 ~r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 331 (397)
T 2ord_A 258 VPIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKEL---TK--EGFLEEVEEKGNYLMKKLQEMKEEYDVVADV 331 (397)
T ss_dssp SCCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHH---TS--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred cCeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 9999999998876 5543333456678999999999888752 11 356677788888888887664 222222
Q ss_pred CCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHHHH
Q 012124 384 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKKGL 461 (470)
Q Consensus 384 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~~~l~~l~~~l 461 (470)
.+ .|.++|+++++.. +..++++.|.+ +||.+.||. ++++|++++ .+++++++++++|++++
T Consensus 332 ~~-~g~~~~~~~~~~~-----------~~~~l~~~l~~-~gi~v~~~~----~~~iRis~~~~~~~e~i~~~~~~l~~~l 394 (397)
T 2ord_A 332 RG-MGLMIGIQFREEV-----------SNREVATKCFE-NKLLVVPAG----NNTIRFLPPLTVEYGEIDLAVETLKKVL 394 (397)
T ss_dssp EE-ETTEEEEEECTTS-----------CHHHHHHHHHH-TTEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EE-EeEEEEEEECChH-----------HHHHHHHHHHH-CCCEEccCC----CCEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence 23 3556788887532 57889998887 599999973 578999966 49999999999999988
Q ss_pred Hh
Q 012124 462 LT 463 (470)
Q Consensus 462 ~~ 463 (470)
++
T Consensus 395 ~~ 396 (397)
T 2ord_A 395 QG 396 (397)
T ss_dssp HT
T ss_pred hh
Confidence 64
No 115
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=100.00 E-value=2e-33 Score=274.00 Aligned_cols=324 Identities=19% Similarity=0.233 Sum_probs=235.9
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 174 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l 174 (470)
.+|+|+.+.+.+ +++.+++++.+... ....|++..+..+||+++++++. . +++++++|+++++.+++.++
T Consensus 4 ~~i~~~~~~~~~-p~~~~~~a~~~~~~-~~~~y~~~~~~~~l~~~la~~~g----~----~~~~~~~~gt~a~~~~~~~~ 73 (347)
T 1jg8_A 4 MMIDLRSDTVTK-PTEEMRKAMAQAEV-GDDVYGEDPTINELERLAAETFG----K----EAALFVPSGTMGNQVSIMAH 73 (347)
T ss_dssp -CEECSCGGGCC-CCHHHHHHHHTCCC-CCGGGTCCHHHHHHHHHHHHHHT----C----SEEEEESCHHHHHHHHHHHH
T ss_pred eEEEeccccCCC-CCHHHHHHHhcCCC-CCcccCCChHHHHHHHHHHHHhC----C----ceEEEecCcHHHHHHHHHHh
Confidence 569999999876 55778877765432 23457778889999999999873 2 46788888889999999999
Q ss_pred cCCCCeEEEcCCCCCChH---HHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------CceEEEEcCCCCCc-ccCC
Q 012124 175 CSPGDEVIIPAPFWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPT-GSVY 244 (470)
Q Consensus 175 ~~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~~p~nPt-G~~~ 244 (470)
++|||+|++++|+|.... ..++..|++++.+ .+ .++.+|++.|++++++ ++++|++++||||| |.++
T Consensus 74 ~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~--~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~ 150 (347)
T 1jg8_A 74 TQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PG--KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVV 150 (347)
T ss_dssp CCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CE--ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCC
T ss_pred cCCCCEEEEcCcchhhhccccchhhccCeEEEEe-cC--CCCccCHHHHHHHhccccccccCceEEEEeccccccCCccC
Confidence 999999999999986533 3577789999988 43 2345899999999975 68999999999999 9999
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEecccccc--ccCCCCcccccccCCCCCceEEEeccCcccccccceee-EEEcCHHHHH
Q 012124 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHI--IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG-YIAGPKHFVA 321 (470)
Q Consensus 245 s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~--~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G-~~~~~~~~~~ 321 (470)
+.+++++|+++|++| |++||+|++|... .+.+.. ...+....+ .++.||||.++.+ +| |+++++++++
T Consensus 151 ~~~~l~~i~~~a~~~-~~~li~D~a~~~~~~~~~~~~---~~~~~~~~d--~~~~s~sK~l~~~---~G~~~~~~~~~~~ 221 (347)
T 1jg8_A 151 PLENIKEICTIAKEH-GINVHIDGARIFNASIASGVP---VKEYAGYAD--SVMFCLSKGLCAP---VGSVVVGDRDFIE 221 (347)
T ss_dssp CHHHHHHHHHHHHHH-TCEEEEEETTHHHHHHHHCCC---HHHHHHTCS--EEEEESSSTTCCS---SCEEEEECHHHHH
T ss_pred cHHHHHHHHHHHHHC-CCEEEeehhhhhcchhhcCCC---hHHhccccc--EEEEecccccCCC---ceEEEEcCHHHHH
Confidence 999999999999999 9999999987531 122211 111111123 3345899999732 67 5678998998
Q ss_pred HHHHHhhhccCCC--ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec-CCCceEEEeeeccC-
Q 012124 322 ACNKIQSQFTSGA--SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFST- 397 (470)
Q Consensus 322 ~l~~~~~~~~~~~--~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~g~~~~~~~~~- 397 (470)
.+...+.....+. +.+.+.++...++.. .+.++ +. .++++.+.+.|+++ |+.+. .+..+.++|++++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~---~~-~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~ 293 (347)
T 1jg8_A 222 RARKARKMLGGGMRQAGVLAAAGIIALTKM---VDRLK---ED-HENARFLALKLKEI-GYSVNPEDVKTNMVILRTDNL 293 (347)
T ss_dssp HHHHHHHHHTCCCSSTHHHHHHHHHHHHHS---STTHH---HH-HHHHHHHHHHHHHH-TCBCCGGGCCSSEEEEECTTS
T ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHHHHH---HHHHH---HH-HHHHHHHHHHHHhc-CceeccCCCcceEEEEEcccc
Confidence 8877655444333 445555555566541 12222 22 24567778888777 66642 23344558999874
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 398 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
.. +..+++++|.++ ||.+.++. .+++|+++.. +++++++++++|+++++++
T Consensus 294 ~~-----------~~~~~~~~l~~~-gi~v~~~~----~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~~ 346 (347)
T 1jg8_A 294 KV-----------NAHGFIEALRNS-GVLANAVS----DTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 346 (347)
T ss_dssp SS-----------CHHHHHHHHHHH-TEECEEEE----TTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cC-----------CHHHHHHHHHHC-CCEEecCC----CCeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 21 678899988765 99998853 4689999864 8999999999999998764
No 116
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=100.00 E-value=3.3e-33 Score=278.76 Aligned_cols=325 Identities=14% Similarity=0.117 Sum_probs=249.4
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcC
Q 012124 106 FDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 185 (470)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~ 185 (470)
..+++.+.+++.+.+ ...| .....++.+.+.+++.+.+|.+ ..+.+++|+|+++++..++.+++++||+|++++
T Consensus 22 ~~~~~~v~~a~~~~~---~~~~--~~~~~~~~~~~~~~la~~~~~~-~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~ 95 (411)
T 3nnk_A 22 INADPRVLRAMSSQL---IGQY--DPAMTHYMNEVMALYRGVFRTE-NRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPV 95 (411)
T ss_dssp CCCCHHHHHHHTSCC---CCTT--CHHHHHHHHHHHHHHHHHHTCC-CSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCCHHHHHHhhccc---cccc--cHHHHHHHHHHHHHHHHHhCCC-CCcEEEECCCcHHHHHHHHHHhcCCCCEEEEec
Confidence 345777777766432 1222 2233455566666666666753 223488899999999999999999999999999
Q ss_pred CCCCC--hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCE
Q 012124 186 PFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 262 (470)
Q Consensus 186 p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~ 262 (470)
|+|++ +...++..|++++.++++. ++.+|++.|++++++ ++++|++++|+||||.+++ +++|.++|++| |+
T Consensus 96 ~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~ 169 (411)
T 3nnk_A 96 FGRFGHLLCEIARRCRAEVHTIEVPW--GEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQP---LAELGEICRRY-DA 169 (411)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHH-TC
T ss_pred CCchHHHHHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceecc---HHHHHHHHHHc-CC
Confidence 99987 8888999999999999853 456899999999976 8999999999999999999 78899999999 99
Q ss_pred EEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh---------------
Q 012124 263 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ--------------- 327 (470)
Q Consensus 263 ~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~--------------- 327 (470)
+||+|++++... .... +.. .+..+++.|++|.++ .+.++||+++++++++.+....
T Consensus 170 ~li~Dea~~~~~----~~~~---~~~-~~~d~~~~s~~K~l~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~ 240 (411)
T 3nnk_A 170 LFYTDATASLGG----NPLE---TDV-WGLDAVSAGMQKCLG-GPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGD 240 (411)
T ss_dssp EEEEECTTTBTT----BCCC---TTT-TTCSEEECCSTTTTC-CCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCS
T ss_pred EEEEECCcccCC----cccc---hhc-cCCcEEEecCccccC-CCCceEEEEECHHHHHHHhhccccccccccccccccc
Confidence 999999986421 1111 221 346699999999864 4456999999999998887543
Q ss_pred ---------------------hhccCCCChHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHHHHHhccCCCCeecCC
Q 012124 328 ---------------------SQFTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGELEGVKMSEP 385 (470)
Q Consensus 328 ---------------------~~~~~~~~~~~q~a~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 385 (470)
.....+.+...+.++..+++. ..++ +++++++++++++++.+.|+++ |+++..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 316 (411)
T 3nnk_A 241 EEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARL---ILQEGLDYGIARHKLHGDALVKGIQAM-GLETFGD 316 (411)
T ss_dssp SCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSC
T ss_pred CCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeCCC
Confidence 112234577777777777764 2344 7889999999999999999987 8877655
Q ss_pred Cc---eEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe-ec--CHHHHHHHHHHHHH
Q 012124 386 QG---AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY-AA--SLTTLQAAVERIKK 459 (470)
Q Consensus 386 ~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~-~~--~~~~i~~~l~~l~~ 459 (470)
.+ +.++|+.+|+.. +..++.+.|++++||.+.+|.....++++|+++ +. +++++++++++|++
T Consensus 317 ~~~~~~~~~~~~~~~~~-----------~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~ 385 (411)
T 3nnk_A 317 LKHKMNNVLGVVIPQGI-----------NGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEA 385 (411)
T ss_dssp GGGBCSSEEEEECCTTC-----------CHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred cccccccEEEEECCCCC-----------CHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHH
Confidence 43 567888887543 788899988877799999986544568999998 43 78999999999999
Q ss_pred HHHhhCC
Q 012124 460 GLLTLRP 466 (470)
Q Consensus 460 ~l~~~~~ 466 (470)
+++++..
T Consensus 386 ~l~~~~~ 392 (411)
T 3nnk_A 386 VLNYLKF 392 (411)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 9987754
No 117
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=100.00 E-value=1.1e-32 Score=275.36 Aligned_cols=323 Identities=13% Similarity=0.134 Sum_probs=246.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEE-EecChHHHHHHHHHHhcCCCCeEEEcC
Q 012124 107 DTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL-VSNGAKQSILQAVLAVCSPGDEVIIPA 185 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~-it~g~~~al~~~~~~l~~~gd~Vlv~~ 185 (470)
..++.+.+++.+. ....|. ....++.+.+.+++.+.+|. ++++++ +++|+++++..++.+++++||+|++++
T Consensus 21 ~~~~~v~~a~~~~---~~~~~~--~~~~~~~~~l~~~la~~~g~--~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~ 93 (416)
T 3isl_A 21 EVDPRVLRVMSTP---VVGQFD--PAFTGIMNETMEMLRELFQT--KNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPI 93 (416)
T ss_dssp CCCHHHHHHTTSC---CCCTTS--HHHHHHHHHHHHHHHHHTTC--CCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CcCHHHHHHhccc---CCCCcc--HHHHHHHHHHHHHHHHHhCC--CCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEec
Confidence 4466666655441 122232 23345566666666666674 456665 889999999999999999999999999
Q ss_pred CCCCC--hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc-CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCE
Q 012124 186 PFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 262 (470)
Q Consensus 186 p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~ 262 (470)
|+|++ +...++..|++++.++++.+ +.+|++.|+++++ +++++|++++|+||||..++ +++|.++|++| |+
T Consensus 94 ~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~ 167 (416)
T 3isl_A 94 YGRFGYLLTEIAERYGANVHMLECEWG--TVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHP---LKAIGEACRTE-DA 167 (416)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CHHHHHHHHHT-TC
T ss_pred CCcccHHHHHHHHhcCCeeEEEecCCC--CCCCHHHHHHHHhhCCCcEEEEEccCCCCceecC---HHHHHHHHHHc-CC
Confidence 99987 66788899999999998754 3589999999997 58999999999999999999 88899999999 99
Q ss_pred EEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh---------------
Q 012124 263 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ--------------- 327 (470)
Q Consensus 263 ~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~--------------- 327 (470)
+||+|++|+.... ... +.. .+..+++.|++|.++ .+.++||+++++++++.+...+
T Consensus 168 ~li~D~a~~~~~~----~~~---~~~-~~~d~~~~s~~K~l~-g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~ 238 (416)
T 3isl_A 168 LFIVDAVATIGGC----EVK---VDE-WKIDAAIGGTQKCLS-VPSGMAPITYNERVADVIAARKKVERGIATQADRAAL 238 (416)
T ss_dssp EEEEECTTTTTTS----CCC---TTT-TTCSEEECCSSSTTC-CCSSEEEEEECHHHHHHHHTC----------------
T ss_pred EEEEECCccccCC----Ccc---hhh-cCCCEEEecCccccC-CCCCeEEEEECHHHHHHhhccccccccccccccchhc
Confidence 9999999874211 111 111 345699999999763 4556899999999988876321
Q ss_pred -----------------------hhccCCCChHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHHHHHhccCCCCeec
Q 012124 328 -----------------------SQFTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGELEGVKMS 383 (470)
Q Consensus 328 -----------------------~~~~~~~~~~~q~a~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 383 (470)
.....+.+...+.++.++++. ..++ +++++++++++++++.+.|+++ |+++.
T Consensus 239 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 314 (416)
T 3isl_A 239 SGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRL---VLEEGLETRFERHRHHEAALAAGIKAM-GLRLF 314 (416)
T ss_dssp --CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBC
T ss_pred cCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEec
Confidence 112334577777777777764 2445 7889999999999999999986 88877
Q ss_pred CCCc---eEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CH-HHHHHHHHHH
Q 012124 384 EPQG---AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SL-TTLQAAVERI 457 (470)
Q Consensus 384 ~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~-~~i~~~l~~l 457 (470)
.+.+ +.++++.+|+.. +..++.+.|.+++||.+.+|.....++++|++++. ++ +++++++++|
T Consensus 315 ~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l 383 (416)
T 3isl_A 315 GDDSCKMPVVTCVEIPGGI-----------DGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGL 383 (416)
T ss_dssp SCGGGBCTTEEEEECCTTC-----------CHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHH
T ss_pred cCccccCCcEEEEeCCCCC-----------CHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHH
Confidence 6654 566888887542 78899999887779999998765567899999943 44 4499999999
Q ss_pred HHHHHhhCC
Q 012124 458 KKGLLTLRP 466 (470)
Q Consensus 458 ~~~l~~~~~ 466 (470)
+++++++..
T Consensus 384 ~~~~~~~~~ 392 (416)
T 3isl_A 384 EAVLLRHNA 392 (416)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 999987653
No 118
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=100.00 E-value=2.3e-33 Score=281.85 Aligned_cols=359 Identities=12% Similarity=0.080 Sum_probs=237.8
Q ss_pred cCCCeEEccCC--CCCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAG--EPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g--~~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|++.| ...+.. ++.+++++.+++.+. ..|.+..+..++++++++++.+..+ .+.++|++|+|+++++.
T Consensus 27 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~gg~ea~~ 103 (430)
T 3i4j_A 27 AGRRYLDGSSGALVANIGHGRAEVGERMAAQAARL-PFVHGSQFSSDVLEEYAGRLARFVG--LPTFRFWAVSGGSEATE 103 (430)
T ss_dssp TSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHC-CCCCTTTCEEHHHHHHHHHHHHHTT--CTTCEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhc-ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCcHHHHHH
Confidence 35668999987 334444 889999999988763 3454556777889999999988776 46679999999999999
Q ss_pred HHHHHhc--------CCCCeEEEcCCCCCChHHHHHHcCCE---------------EEEecCcCC-CCCccCHHhHhhhc
Q 012124 169 QAVLAVC--------SPGDEVIIPAPFWVSYPEMARIADAT---------------PVILPTRIS-ENFLLDPKVLESKL 224 (470)
Q Consensus 169 ~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~---------------~~~v~~~~~-~~~~~d~~~l~~~l 224 (470)
.+++.+. .++|.|++.+|+|+++...+...+.. +..++.+.. .....|++.|++++
T Consensus 104 ~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l 183 (430)
T 3i4j_A 104 SAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALL 183 (430)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHH
Confidence 9999876 34789999999999987655444332 222332110 00123568888888
Q ss_pred c----CCceEEEEcCCCC-Cccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEec
Q 012124 225 T----EKSRLLILCSPSN-PTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 298 (470)
Q Consensus 225 ~----~~~~~i~l~~p~n-PtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S 298 (470)
+ +++++|+++.++| ++|. .++.+++++|.++|++| |++||+||+|.+|.+.+. ...+..+++.... +.+
T Consensus 184 ~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DEv~~~~~~~g~-~~~~~~~~~~~~d---i~t 258 (430)
T 3i4j_A 184 EREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEA-GIIFIADEVMSGMGRCGS-PLALSRWSGVTPD---IAV 258 (430)
T ss_dssp HHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSS-SSGGGGTTTCCCS---EEE
T ss_pred HhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcccc-hhhhhhhcCCCCc---EEE
Confidence 6 3445555555577 8887 77888999999999999 999999999998765543 1222222011112 447
Q ss_pred cCccccccc-ceeeEEEcCHHHHHHHHHH----hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 012124 299 FSKAFAMTG-WRLGYIAGPKHFVAACNKI----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 373 (470)
Q Consensus 299 ~sK~~~~~G-~r~G~~~~~~~~~~~l~~~----~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (470)
|||.++ +| +|+||+++++++++.+... ....+++.+++.|.++.++|+.... +++.++.++..+..++.+.+.
T Consensus 259 ~sK~l~-~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~ 336 (430)
T 3i4j_A 259 LGKGLA-AGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVER-EDLTGAAKERGAQLLAGLQAL 336 (430)
T ss_dssp ECGGGT-TTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHH
T ss_pred Eccccc-CCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHH
Confidence 999998 79 9999999999999998874 3445678899999999998874221 345566666666666666666
Q ss_pred hccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC---CCCcEEEEee--cCHH
Q 012124 374 FGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG---DDTCIRISYA--ASLT 448 (470)
Q Consensus 374 L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~---~~~~iRls~~--~~~~ 448 (470)
+.+++++....+.+. |+|+.+++...... ........++++.|+++ ||.+.|+..+. .++++|++++ .+++
T Consensus 337 ~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~-Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e 412 (430)
T 3i4j_A 337 QARFPQMMQVRGTGL-LLGVVLGDLATGQA--FETPGIASRIGAAALKR-GLITYPGSGAEPNGRGDHLLLGPPLSITAA 412 (430)
T ss_dssp HHHCTTEEEEEEETT-EEEEEEC--------------CHHHHHHHHHHT-TEECC-----------CEEEECCCTTCCHH
T ss_pred HHhCCCeEEEEEEEE-EEEEEeccccccCC--CccHHHHHHHHHHHHhC-CCEEEecccccCCCCCCEEEEECCCCCCHH
Confidence 656666666555544 57777753200000 00001246788888765 99999984322 2568999988 3999
Q ss_pred HHHHHHHHHHHHHHhh
Q 012124 449 TLQAAVERIKKGLLTL 464 (470)
Q Consensus 449 ~i~~~l~~l~~~l~~~ 464 (470)
++++++++|+++++++
T Consensus 413 ~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 413 EVDGLLALLAGALEDV 428 (430)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999865
No 119
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=100.00 E-value=1.7e-33 Score=284.86 Aligned_cols=359 Identities=12% Similarity=0.136 Sum_probs=247.4
Q ss_pred cccccCCchHHHHHHHHHHHHhcCCCeEEccCCCC--CC-------CChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHH
Q 012124 70 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP--DF-------DTPVLIAEAGINAIREGFTRYTPNAGTLELRSAI 140 (470)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~--~~-------~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~i 140 (470)
++..+.++...........+...|.++++++.|.+ |+ ..++.+++++. .....|.+..+..+||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~ylD~~~~~~~~~~~~~~~~a~~----~~~~~y~~~~~~~~l~~~l 84 (456)
T 2ez2_A 9 RIKSVETVSMIPRDERLKKMQEAGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMM----MGDEAYAGSENFYHLERTV 84 (456)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHTTTCGGGSCGGGCSEECSCSSSCCCCCHHHHHHHT----TCCCCSSSCHHHHHHHHHH
T ss_pred eeeeecccCCCCHHHHHHHHHHCCCCcccCCcccceeeeccccCCccCCHHHHHHhh----cchhhcccChhHHHHHHHH
Confidence 34455555443344444455556666666666654 33 23455555544 4455788888999999999
Q ss_pred HHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCC-CChHHHHHHcCCEEEEecCcCC----C----
Q 012124 141 CHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFW-VSYPEMARIADATPVILPTRIS----E---- 211 (470)
Q Consensus 141 a~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y-~~~~~~~~~~g~~~~~v~~~~~----~---- 211 (470)
++++. .+++++|+|+++++.+++++++++|| ++++|+| ..+...++..|++++.++++.+ +
T Consensus 85 a~~~~--------~~~~~~~~~gt~a~~~al~~l~~~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~ 154 (456)
T 2ez2_A 85 QELFG--------FKHIVPTHQGRGAENLLSQLAIKPGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAF 154 (456)
T ss_dssp HHHHC--------CSEEEEESSHHHHHHHHHHHHCCTTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSC
T ss_pred HHHhC--------CCcEEEeCCcHHHHHHHHHHhCCCCC--EeccccccchhHHHHHHcCCEEEEecccccccccccccc
Confidence 99973 24899999999999999999999999 7889999 6668889999999999998732 2
Q ss_pred CCccCHHhHhhhccCCc----eEEEEcCCCC-CcccCCCHHHHHHHHHHHHhCCCEEEEEeccccc----------cccC
Q 012124 212 NFLLDPKVLESKLTEKS----RLLILCSPSN-PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH----------IIYA 276 (470)
Q Consensus 212 ~~~~d~~~l~~~l~~~~----~~i~l~~p~n-PtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~----------~~~~ 276 (470)
++.+|++.|++++++++ ++|++++|+| |||.+++.+++++|+++|++| |++||+||+|.. +.+.
T Consensus 155 ~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~-~i~li~De~~~~g~~~~~~~~~~~~~ 233 (456)
T 2ez2_A 155 KGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAH-GIKVFYDATRCVENAYFIKEQEQGFE 233 (456)
T ss_dssp TTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHT-TCCEEEECTTHHHHHHHHHHHSTTCT
T ss_pred cCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHc-CCeEEEEccccccccccccccccccC
Confidence 36789999999997554 8888999998 999999999999999999999 999999999986 3454
Q ss_pred CCCccccc-ccCCCCCceEEEeccCcccccccceeeEEEc-CHHHHHHHHHHhhhc-----cCCCChHHHHH-HHHHHhc
Q 012124 277 PATHTSFA-SLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQF-----TSGASSISQKA-GVAALGL 348 (470)
Q Consensus 277 ~~~~~~~~-~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~-----~~~~~~~~q~a-~~~~l~~ 348 (470)
+....++. .+.. ...++++ |++|..+ +| +.||+++ ++++++.+....... ..+.+.....+ +...++.
T Consensus 234 g~~~~~~~~~~~~-~~d~~~~-S~kk~~~-~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~ 309 (456)
T 2ez2_A 234 NKSIAEIVHEMFS-YADGCTM-SGKKDCL-VN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREA 309 (456)
T ss_dssp TSCHHHHHHHHHT-TCSEEEE-ETTTTTC-CS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHH
T ss_pred Ccchhhhhhhhcc-cCCEEEE-eCcccCC-CC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHH
Confidence 32111110 1111 1234444 7888765 67 7899998 788988887655431 11223333222 3333321
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccC---ccCCcccCCCCCCCHHHH-----HHHHH
Q 012124 349 GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST---YYGSEAEGFGKIENSESL-----CRYLL 420 (470)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~l-----~~~L~ 420 (470)
.+ +...++.++..+.+.+.|++. |+.+..|.+++++|++++. .. +..++ ++.|+
T Consensus 310 ---~~---~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~L~ 371 (456)
T 2ez2_A 310 ---MQ---YEYIEHRVKQVRYLGDKLKAA-GVPIVEPVGGHAVFLDARRFCEHL-----------TQDEFPAQSLAASIY 371 (456)
T ss_dssp ---TC---HHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEEHHHHTTTS-----------CGGGCHHHHHHHHHH
T ss_pred ---hH---HHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEhHHhcCCC-----------ChhhccHHHHHHHHH
Confidence 11 233333445556777777775 7877778888989988742 11 23333 77775
Q ss_pred HcCCEEEEC-CCCC------------CCCCcEEEEee---cCHHHHHHHHHHHHHHHHhhC
Q 012124 421 DKAQVALVP-GDAF------------GDDTCIRISYA---ASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 421 ~~~gI~v~p-g~~f------------~~~~~iRls~~---~~~~~i~~~l~~l~~~l~~~~ 465 (470)
+++||.+.+ |..| ...+++||+++ .+++++++++++|++++++..
T Consensus 372 ~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 372 VETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp HHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred HhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 556998766 4322 11378999998 589999999999999987653
No 120
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=100.00 E-value=4.8e-33 Score=275.72 Aligned_cols=327 Identities=16% Similarity=0.147 Sum_probs=247.5
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEc
Q 012124 105 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIP 184 (470)
Q Consensus 105 ~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~ 184 (470)
+..+++.+.+++.+.. ...|. .+..++.+.+.+++.+.+|.+ .+++|++|+|+++++..++++++++||+|+++
T Consensus 31 p~~~~~~v~~a~~~~~---~~~~~--~~~~~~~~~l~~~la~~~~~~-~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~ 104 (393)
T 3kgw_A 31 PSNLAPRVLAAGSLRM---IGHMQ--KEMLQIMEEIKQGIQYVFQTR-NPLTLVVSGSGHCAMETALFNLLEPGDSFLTG 104 (393)
T ss_dssp CCCCCHHHHHHTTCCC---CCTTS--HHHHHHHHHHHHHHHHHHTCC-CSEEEEESCCTTTHHHHHHHHHCCTTCEEEEE
T ss_pred CCCCCHHHHHHhcccc---cCccc--HHHHHHHHHHHHHHHHHhCCC-CCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEE
Confidence 3445777777776532 11221 222344555555555555643 33469999999999999999999999999999
Q ss_pred CCCCCCh--HHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC
Q 012124 185 APFWVSY--PEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 261 (470)
Q Consensus 185 ~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~ 261 (470)
.++|++. ...++..|++++.++++.+ +.+|++.|++++++ ++++|++++||||||.+++ +++|.++|++| |
T Consensus 105 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~ 178 (393)
T 3kgw_A 105 TNGIWGMRAAEIADRIGARVHQMIKKPG--EHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQP---LDGFGELCHRY-Q 178 (393)
T ss_dssp ESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHT-T
T ss_pred eCCchhHHHHHHHHHcCCceEEEeCCCC--CCCCHHHHHHHHhhCCCcEEEEeccCCcchhhcc---HHHHHHHHHHc-C
Confidence 9887533 5678889999999998644 35899999999987 8999999999999999999 88899999999 9
Q ss_pred EEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhh-------------
Q 012124 262 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS------------- 328 (470)
Q Consensus 262 ~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~------------- 328 (470)
++||+|++|+... .... ... .+..+++.|+||.++ ++.++||+++++++++.+.....
T Consensus 179 ~~li~De~~~~g~----~~~~---~~~-~~~d~~~~s~sK~~~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (393)
T 3kgw_A 179 CLLLVDSVASLGG----VPIY---MDQ-QGIDIMYSSSQKVLN-APPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLA 249 (393)
T ss_dssp CEEEEECTTTTTT----SCCC---TTT-TTCCEEEEESSSTTC-CCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHH
T ss_pred CEEEEECCccccC----cccc---hhh-cCCCEEEecCccccc-CCCceeEEEECHHHHHHHhccCCCCCceeecHHHHH
Confidence 9999999987421 1111 121 345688999999874 44559999999999988765321
Q ss_pred ----------hccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC----ceEEEeee
Q 012124 329 ----------QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFYLFID 394 (470)
Q Consensus 329 ----------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~g~~~~~~ 394 (470)
....+.+...+.++..+++.. .+.++++++++++++++.+.+.|+++ |+++..+. .++++|+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 326 (393)
T 3kgw_A 250 KLWGCEGETRVIHHTTPVTSLYCLRESLALI--AEQGLENCWRRHREATAHLHKHLQEM-GLKFFVKDPEIRLPTITTVT 326 (393)
T ss_dssp HHTTCSSSCCCCCCCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCSSEEEEE
T ss_pred HhhhhccccCCCCCCCCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcCCeEEEEe
Confidence 112345777777776776631 13347888999999999999999988 88776433 35667888
Q ss_pred ccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe-ec--CHHHHHHHHHHHHHHHHhhCC
Q 012124 395 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY-AA--SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~-~~--~~~~i~~~l~~l~~~l~~~~~ 466 (470)
+++.. +..++.+.|++++||.+.+|..+..++++|+++ +. +++++++++++|++++++++.
T Consensus 327 ~~~~~-----------~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~ 390 (393)
T 3kgw_A 327 VPAGY-----------NWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHCPK 390 (393)
T ss_dssp CCTTB-----------CHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCB
T ss_pred CCCCC-----------CHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhh
Confidence 87543 788999998877799999998766778999998 53 899999999999999988764
No 121
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=100.00 E-value=9.3e-33 Score=275.16 Aligned_cols=335 Identities=13% Similarity=0.131 Sum_probs=247.3
Q ss_pred cCCCeEEccCCC---CCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE---PDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~---~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|++.|. +--..++.+.+++.+++.+....+ .....+.++.+++++.+.+| .++|++|+|+++++.
T Consensus 37 ~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~----~~~v~~~~gg~~a~~ 110 (406)
T 4adb_A 37 QGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTG--NGYTNEPVLRLAKKLIDATF----ADRVFFCNSGAEANE 110 (406)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCC--TTSCCHHHHHHHHHHHHHSS----CSEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccccc--CCcCCHHHHHHHHHHHhhCC----CCeEEEeCcHHHHHH
Confidence 456789999883 322247889999999886532211 11112445555555555554 359999999999999
Q ss_pred HHHHHhcC-------CC-CeEEEcCCCCCChHHHHHHcCC-------------EEEEecCcCCCCCccCHHhHhhhccCC
Q 012124 169 QAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIADA-------------TPVILPTRISENFLLDPKVLESKLTEK 227 (470)
Q Consensus 169 ~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~d~~~l~~~l~~~ 227 (470)
.+++.+.. +| |.|++.+|+|+++...+...+. ++..+|. .|++.|+++++++
T Consensus 111 ~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~ 183 (406)
T 4adb_A 111 AALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-------NDINSASALIDDS 183 (406)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-------TCHHHHHTTCSTT
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-------CcHHHHHHHhcCC
Confidence 99998865 66 9999999999998765554443 4444443 3899999999989
Q ss_pred ceEEEEcCCCCCcccCC--CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccc
Q 012124 228 SRLLILCSPSNPTGSVY--PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 305 (470)
Q Consensus 228 ~~~i~l~~p~nPtG~~~--s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~ 305 (470)
+++|+++ |+||||.++ +.+++++|+++|++| |++||+||+|.++.+.+... .+..... ...++ ||||.++
T Consensus 184 ~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~-~~~li~De~~~~~~~~g~~~-~~~~~~~-~~d~~---t~sK~~~- 255 (406)
T 4adb_A 184 TCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRH-NALLIFDEVQTGVGRTGELY-AYMHYGV-TPDLL---TTAKALG- 255 (406)
T ss_dssp EEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSS-HHHHHTC-CCSEE---EECGGGG-
T ss_pred eEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCccchhH-HHHhcCC-CCCEE---Eechhhc-
Confidence 9998888 999999988 999999999999999 99999999999876654322 2112221 12333 7899998
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC---CCee
Q 012124 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE---GVKM 382 (470)
Q Consensus 306 ~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~ 382 (470)
+|+|+||+++++++++.+.......+++.+++.|.++.++++... . ++.++.++++++++.+.|+++. ....
T Consensus 256 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 330 (406)
T 4adb_A 256 GGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELIN---T--PEMLNGVKQRHDWFVERLNTINHRYGLFS 330 (406)
T ss_dssp TTSCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHS---S--HHHHHHHHHHHHHHHHHHHHHHHHHCCEE
T ss_pred CCCCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHH---h--cCHHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 999999999999999888776666778899999999999887522 1 4666777777777777776641 1111
Q ss_pred cCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHHH
Q 012124 383 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKKG 460 (470)
Q Consensus 383 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~~~l~~l~~~ 460 (470)
..+..|+++|+.+++.. ..+..++++.|.++ ||.+.|+. ++++|++++ .+++++++++++|+++
T Consensus 331 ~~~~~g~~~~~~~~~~~---------~~~~~~~~~~l~~~-gi~v~~~~----~~~iRi~~~~~~~~e~i~~~~~~l~~~ 396 (406)
T 4adb_A 331 EVRGLGLLIGCVLNADY---------AGQAKQISQEAAKA-GVMVLIAG----GNVVRFAPALNVSEEEVTTGLDRFAAA 396 (406)
T ss_dssp EEEEETTEEEEEECTTT---------TTCHHHHHHHHHHT-TEECEESS----TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEEEEeCCc---------HHHHHHHHHHHHHC-CcEEeecC----CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 12234667888887531 01478899988876 99999864 679999655 4999999999999999
Q ss_pred HHhhCC
Q 012124 461 LLTLRP 466 (470)
Q Consensus 461 l~~~~~ 466 (470)
+++++.
T Consensus 397 l~~~~~ 402 (406)
T 4adb_A 397 CEHFVS 402 (406)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 987754
No 122
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=100.00 E-value=4.3e-33 Score=272.38 Aligned_cols=329 Identities=11% Similarity=0.068 Sum_probs=237.6
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
+++|||+.+.+. .+++.+++++.+........|++ .++++.+++++.+.+| .+++|++|+|+++++.+++.+
T Consensus 7 ~~~id~~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~----~~~~~~l~~~la~~~g---~~~~v~~~~~gt~a~~~al~~ 78 (356)
T 1v72_A 7 PPALGFSSDNIA-GASPEVAQALVKHSSGQAGPYGT----DELTAQVKRKFCEIFE---RDVEVFLVPTGTAANALCLSA 78 (356)
T ss_dssp CCCCBCSCGGGC-CCCHHHHHHHHHTTSSCCCSTTC----SHHHHHHHHHHHHHHT---SCCEEEEESCHHHHHHHHHHT
T ss_pred CceEeeccCCcc-CCCHHHHHHHHhhccCccccccc----chHHHHHHHHHHHHhC---CCCcEEEeCCccHHHHHHHHH
Confidence 467899988654 46788888888875321334533 4555555555555566 245699999999999999999
Q ss_pred hcCCCCeEEEcCCCCCChHHH--HHHc--CCEEEEecCcCCCCCccCHHhHhh-hccC-------CceEEEEcCCCCCcc
Q 012124 174 VCSPGDEVIIPAPFWVSYPEM--ARIA--DATPVILPTRISENFLLDPKVLES-KLTE-------KSRLLILCSPSNPTG 241 (470)
Q Consensus 174 l~~~gd~Vlv~~p~y~~~~~~--~~~~--g~~~~~v~~~~~~~~~~d~~~l~~-~l~~-------~~~~i~l~~p~nPtG 241 (470)
+.++||+|++++|+|...... +... |++++.+|.+ ++.+|++.|++ ++++ ++++|++++||| ||
T Consensus 79 ~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG 154 (356)
T 1v72_A 79 MTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VG 154 (356)
T ss_dssp SCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TS
T ss_pred hcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC---CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CC
Confidence 999999999999998776555 6666 9999999874 25699999999 8875 688999988987 99
Q ss_pred cCCCHHHHHHHHHHHHhCCCEEEEEecccccccc--CCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHH
Q 012124 242 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY--APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 319 (470)
Q Consensus 242 ~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~--~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~ 319 (470)
.++|.+++++|+++|++| |++||+|++|..+.. .+.. +....+.. +..+++.|+||. +. ....||+++++++
T Consensus 155 ~~~~~~~l~~i~~~~~~~-~~~li~D~a~~~~~~~~~~~~-~~~~~~~~--~~d~~~~s~sK~-g~-~~G~g~~~~~~~~ 228 (356)
T 1v72_A 155 SIYTLDEIEAIGDVCKSS-SLGLHMDGSRFANALVSLGCS-PAEMTWKA--GVDALSFGATKN-GV-LAAEAIVLFNTSL 228 (356)
T ss_dssp CCCCHHHHHHHHHHHHHT-TCEEEEEETTHHHHHHHHTCC-TTTTTGGG--TCCEEEECCGGG-TC-SSCEEEEESSGGG
T ss_pred ccCCHHHHHHHHHHHHHc-CCeEEEEchhhHhHhccCCCC-HHHhhhhh--cCCEEEEecccC-CC-cCccEEEEECHHH
Confidence 999999999999999999 999999999976421 1211 11111111 112445689998 42 2223488889999
Q ss_pred HHHHHHHhhhccC-CC-ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccC
Q 012124 320 VAACNKIQSQFTS-GA-SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST 397 (470)
Q Consensus 320 ~~~l~~~~~~~~~-~~-~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~ 397 (470)
++.+......... .. +...+..+...++. ....+..++++++++++.+.|++++|+++..|.+++++|++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~- 302 (356)
T 1v72_A 229 ATEMSYRRKRAGHLSSKMRFLSAQIDAYLTD-----DLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD- 302 (356)
T ss_dssp HHHHHHHHHHTTCCCSSTHHHHHHHHHHTST-----THHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC-
T ss_pred HhhHHHHhhccCchhhhHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEEcC-
Confidence 8887765433221 12 22333333444432 2334456777888999999999888998877777888998874
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 398 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
.+++++|.++ ||.+.||. |+ ++++|++++. +++++++++++|++++++.
T Consensus 303 ---------------~~~~~~l~~~-gi~v~~g~-~~-~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 303 ---------------SAMIDALLKA-GFGFYHDR-WG-PNVVRFVTSFATTAEDVDHLLNQVRLAADRT 353 (356)
T ss_dssp ---------------HHHHHHHHHT-TCBCBCSS-SS-TTEEEEECCTTCCHHHHHHHHHHHHHTC---
T ss_pred ---------------HHHHHHHHhc-CeEEeccc-cC-CCeEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 2677777655 99999987 65 7899999874 8999999999999887654
No 123
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.6e-33 Score=277.97 Aligned_cols=334 Identities=13% Similarity=0.128 Sum_probs=238.6
Q ss_pred cCCCeEEccCCCCC--CCC--hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 92 AGVSVIRLAAGEPD--FDT--PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~--~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
+|+.++|++.|.+. +.. ++.+++++.+++.... .|++..+..+++..+++.+.+.+|.+. +++|++|+|+++++
T Consensus 40 ~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~v~~~~gg~ea~ 117 (419)
T 2eo5_A 40 DGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLA-HAAANDFYNIPQLELAKKLVTYSPGNF-QKKVFFSNSGTEAI 117 (419)
T ss_dssp TSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSC-CCSCSCSCCHHHHHHHHHHHHHSSCSS-CEEEEEESSHHHHH
T ss_pred CCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCc-cccccccCCHHHHHHHHHHHHhCCCCc-CCEEEEeCchHHHH
Confidence 45678999998843 333 7999999999986532 343334445677777777777777543 78999999999999
Q ss_pred HHHHHHhcC-CCCeEEEcCCCCCChHHHHH-HcC-------------CEEEEecCcCCC--CCc------------cCHH
Q 012124 168 LQAVLAVCS-PGDEVIIPAPFWVSYPEMAR-IAD-------------ATPVILPTRISE--NFL------------LDPK 218 (470)
Q Consensus 168 ~~~~~~l~~-~gd~Vlv~~p~y~~~~~~~~-~~g-------------~~~~~v~~~~~~--~~~------------~d~~ 218 (470)
..+++.+.. +||+|++.+|+|+++..... ..| .+++.+|.+.+. +|+ +|++
T Consensus 118 ~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~ 197 (419)
T 2eo5_A 118 EASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIE 197 (419)
T ss_dssp HHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHH
Confidence 999987654 49999999999987654332 221 356777764211 112 4688
Q ss_pred hHh-hhcc-----CCceEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCC
Q 012124 219 VLE-SKLT-----EKSRLLILCSP-SNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 290 (470)
Q Consensus 219 ~l~-~~l~-----~~~~~i~l~~p-~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~ 290 (470)
.|+ ++++ +++++ ++++| +||||. ..+.+++++|.++|++| |++||+||+|.+|.+.+.. ..+.... ..
T Consensus 198 ~l~~~~i~~~~~~~~~~~-vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~-~~~li~DE~~~~~g~~g~~-~~~~~~~-~~ 273 (419)
T 2eo5_A 198 FIEDYIFVNLVPPEEVAG-IFFEPIQGEGGYVIPPKNFFAELQKLAKKY-GILLVDDEVQMGLGRTGKL-FAIENFN-TV 273 (419)
T ss_dssp HHHHTHHHHTCCGGGEEE-EEECSSBTTTTSBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGGT-CC
T ss_pred HHHHHHHhhccCCCCEEE-EEEeCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCccCcch-hhHHhcC-CC
Confidence 999 8886 34444 44566 568996 67899999999999999 9999999999987654421 1111111 11
Q ss_pred CceEEEeccCccccccc-ceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 012124 291 ERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 369 (470)
Q Consensus 291 ~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 369 (470)
.+ +.||||.++ +| +|+||++++++++ .+ ......+++.+++.|.++.++|+. .+ +.++.+++++++
T Consensus 274 ~d---~~t~sK~~~-~G~~riG~~~~~~~~~-~~-~~~~~~t~~~n~~~~~aa~aal~~---~~----~~~~~~~~~~~~ 340 (419)
T 2eo5_A 274 PD---VITLAKALG-GGIMPIGATIFRKDLD-FK-PGMHSNTFGGNALACAIGSKVIDI---VK----DLLPHVNEIGKI 340 (419)
T ss_dssp CS---EEEECGGGG-TTTSCCEEEEEEGGGC-CC-------CCCCCHHHHHHHHHHHHH---HH----HHHHHHHHHHHH
T ss_pred CC---EEEeccccc-CCccceEEEEEchHhh-cC-CcccCCCCCCCHHHHHHHHHHHHH---HH----HHHHHHHHHHHH
Confidence 22 338999998 69 9999999999887 66 323345677899999999999874 12 277888999999
Q ss_pred HHHHhccCCCCeecCCCceEEEeeecc-CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cC
Q 012124 370 LVKSFGELEGVKMSEPQGAFYLFIDFS-TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--AS 446 (470)
Q Consensus 370 l~~~L~~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~ 446 (470)
+.+.|+++ +....+. |.++|++++ ... ... +++.|++ +||.+.|+. ++++|++++ .+
T Consensus 341 l~~~L~~~--~~~~~~~-g~~~~i~~~~~~~-----------~~~-~~~~l~~-~Gv~v~~~~----~~~lRis~~~~~t 400 (419)
T 2eo5_A 341 FAEELQGL--ADDVRGI-GLAWGLEYNEKKV-----------RDR-IIGESFK-RGLLLLPAG----RSAIRVIPPLVIS 400 (419)
T ss_dssp HHHHHTTS--SSEEEEE-TTEEEEECSCHHH-----------HHH-HHHHHHH-TTEECEEET----TTEEEECCCTTCC
T ss_pred HHHHHHHh--hhheEee-eEEEEEEEecCcc-----------HHH-HHHHHHH-CCCEEecCC----CCEEEEECCCCCC
Confidence 99999876 3333333 555778883 210 345 8888875 499999964 578999876 39
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 012124 447 LTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 447 ~~~i~~~l~~l~~~l~~~ 464 (470)
++++++++++|+++++++
T Consensus 401 ~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 401 EEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999998764
No 124
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=100.00 E-value=3e-33 Score=278.72 Aligned_cols=336 Identities=13% Similarity=0.096 Sum_probs=250.6
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCc---CcHH--HHHHHH-HHHHHHcCCCCCCCcEEEecChHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNA---GTLE--LRSAIC-HKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~-~~~~y~~~~---g~~~--lr~~ia-~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
.++|+|+.|.+.+ ++.+.+++.+.+.+ ....|+... |.+. +++.++ +++.+.+|. ++++|++++|+. +
T Consensus 23 ~~~i~~~~~~~~~--~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~--~~~~i~~~sGt~-a 97 (407)
T 2dkj_A 23 REGLELIASENFV--SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGA--AWANVQPHSGSQ-A 97 (407)
T ss_dssp HTSEECCTTCCCC--CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCCSSHHH-H
T ss_pred hcceeeccCCCCC--CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCC--CcceEEecchHH-H
Confidence 4679999999876 88899999888764 345564332 5554 455433 466666674 455677777765 9
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCChH---HHHHHcCC--EEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCc
Q 012124 167 ILQAVLAVCSPGDEVIIPAPFWVSYP---EMARIADA--TPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPT 240 (470)
Q Consensus 167 l~~~~~~l~~~gd~Vlv~~p~y~~~~---~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPt 240 (470)
+..++++++++||+|++++|+|+.+. ..++..|. ..+++++++ +++.+|++.|++++++ ++++|++++|+||
T Consensus 98 ~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~l~~~~~~~v~~~~p~~~- 175 (407)
T 2dkj_A 98 NMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRP-DTELIDLEEVRRLALEHRPKVIVAGASAYP- 175 (407)
T ss_dssp HHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCT-TTSSCCHHHHHHHHHHHCCSEEEECCSSCC-
T ss_pred HHHHHHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCc-ccCccCHHHHHHHHhhcCCeEEEEeccccC-
Confidence 99999999999999999999999883 44555565 455555442 3567999999999974 8999999999998
Q ss_pred ccCCCHHHHHHHHHHHHhCCCEEEEEeccccc-cccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC-HH
Q 012124 241 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KH 318 (470)
Q Consensus 241 G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~-~~ 318 (470)
...+ +++|.++|++| |++||+||+|+. +.+.+... .. +. ..+++++||||.+ +|.|+||++++ ++
T Consensus 176 -~~~~---l~~i~~l~~~~-~~~li~Dea~~~g~~~~~~~~-~~--~~---~~di~~~s~sK~l--~g~~~G~~~~~~~~ 242 (407)
T 2dkj_A 176 -RFWD---FKAFREIADEV-GAYLVVDMAHFAGLVAAGLHP-NP--LP---YAHVVTSTTHKTL--RGPRGGLILSNDPE 242 (407)
T ss_dssp -SCCC---HHHHHHHHHHH-TCEEEEECTTTHHHHHTTCSC-CC--TT---TCSEEEEESSGGG--CCCSCEEEEESCHH
T ss_pred -CCCC---HHHHHHHHHHc-CCEEEEEccccccccccCccC-Cc--cc---cccEEEEeccccC--CCCCceEEEECCHH
Confidence 5566 88999999999 999999999997 55443211 11 11 2568999999965 68899999999 89
Q ss_pred HHHHHHHHhhhccCCCChHHHH-HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC-CCceEEEeeecc
Q 012124 319 FVAACNKIQSQFTSGASSISQK-AGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFS 396 (470)
Q Consensus 319 ~~~~l~~~~~~~~~~~~~~~q~-a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g~~~~~~~~ 396 (470)
+++.+......+..+++...+. ++.++++.. ...++++++++++++++++.+.|+++ |+++.. +..++++|++++
T Consensus 243 ~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~ 319 (407)
T 2dkj_A 243 LGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEA--LQPEFKEYSRLVVENAKRLAEELARR-GYRIVTGGTDNHLFLVDLR 319 (407)
T ss_dssp HHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECG
T ss_pred HHHHHHhhhcccccCCCcHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHhC-CceeecCCCCceEEEEECc
Confidence 9998887765554444444444 555666531 13678889999999999999999988 888765 356777899987
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC------CCCCcEEEEee------cCHHHHHHHHHHHHHHHHh
Q 012124 397 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF------GDDTCIRISYA------ASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f------~~~~~iRls~~------~~~~~i~~~l~~l~~~l~~ 463 (470)
..- .+..++.+.|.+ +||.+.+|..| +.++++|++++ .+++++++++++|++++++
T Consensus 320 ~~~----------~~~~~~~~~l~~-~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 320 PKG----------LTGKEAEERLDA-VGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp GGT----------CCHHHHHHHHHH-TTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred ccC----------CCHHHHHHHHHH-cCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 420 156788887754 59999998754 23578999996 5889999999999999876
No 125
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=100.00 E-value=1.1e-31 Score=269.01 Aligned_cols=324 Identities=13% Similarity=0.122 Sum_probs=244.2
Q ss_pred EccCCCCCCCChHHHHHHHHHHHHcCCCCCCC-CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcC
Q 012124 98 RLAAGEPDFDTPVLIAEAGINAIREGFTRYTP-NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS 176 (470)
Q Consensus 98 ~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~-~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~ 176 (470)
+|+.|.|++++|+.+++++.+.+..+ .|++ ..+..+||+++++++. .++|++|+|+++++.+++.++.
T Consensus 20 ~l~~~~p~~~~p~~~~~a~~~~~~~~--~y~~~~~~~~~l~~~la~~~~--------~~~v~~~~ggt~al~~~l~~l~- 88 (424)
T 2po3_A 20 PLLVGRPNRIDRARLYERLDRALDSQ--WLSNGGPLVREFEERVAGLAG--------VRHAVATCNATAGLQLLAHAAG- 88 (424)
T ss_dssp CEETTCCCCCCHHHHHHHHHHHHHHT--CCSSSCHHHHHHHHHHHHHHT--------SSEEEEESCHHHHHHHHHHHHT-
T ss_pred cccccCCCCCChHHHHHHHHHHHhcC--CcccCCHHHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHcC-
Confidence 68999999999999999999988764 4866 6889999999999973 2589999999999999999985
Q ss_pred CCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHH
Q 012124 177 PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV 256 (470)
Q Consensus 177 ~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~ 256 (470)
+||+|++++|+|+++...++..|++++.+++++ +++.+|++.|++++++++++|+++ ||||...+ +++|+++|
T Consensus 89 ~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~~~---~~tG~~~~---l~~i~~la 161 (424)
T 2po3_A 89 LTGEVIMPSMTFAATPHALRWIGLTPVFADIDP-DTGNLDPDQVAAAVTPRTSAVVGV---HLWGRPCA---ADQLRKVA 161 (424)
T ss_dssp CCSEEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTSSBCHHHHGGGCCTTEEEEEEE---CGGGCCCC---HHHHHHHH
T ss_pred CCCEEEECCCccHHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHhhCcCCcEEEEE---CCCCCcCC---HHHHHHHH
Confidence 899999999999999999999999999999975 356799999999998889988875 48999876 88999999
Q ss_pred HhCCCEEEEEecccc-ccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC-HHHHHHHHHHhhhccCC-
Q 012124 257 AKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFTSG- 333 (470)
Q Consensus 257 ~~~~~~~iI~Dd~~~-~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~- 333 (470)
+++ |++||+|++|+ ++.+++. ++..+. + +++.||||..+++|.|+||++++ +++++.+.........+
T Consensus 162 ~~~-~~~li~Dea~~~g~~~~~~---~~~~~~---d--i~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~~ 232 (424)
T 2po3_A 162 DEH-GLRLYFDAAHALGCAVDGR---PAGSLG---D--AEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFDLP 232 (424)
T ss_dssp HHT-TCEEEEECTTCTTCEETTE---ETTSSS---S--EEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTTTCT
T ss_pred HHc-CCEEEEECccccCCeECCe---eccccc---C--EEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhcCcccc
Confidence 999 99999999999 4655432 222221 2 89999995555566899999999 88998887765432111
Q ss_pred --------CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC-CCce---EEE-eeeccC---
Q 012124 334 --------ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGA---FYL-FIDFST--- 397 (470)
Q Consensus 334 --------~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g---~~~-~~~~~~--- 397 (470)
...+.+.++...+.. .+.+++..++.++.++++.+.|++++|+.+.. +.++ +++ ++.+++
T Consensus 233 ~~~~~~g~~~~~~~~~aa~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~ 308 (424)
T 2po3_A 233 GGSPAGGTNAKMSEAAAAMGLTS----LDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATT 308 (424)
T ss_dssp TCCTTCCCBCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHH
T ss_pred ccccccCcCCCcCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCccc
Confidence 001123333333332 34566677777888888999999888888765 4433 233 366663
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC--------------CCCc-------EEEEeec--CHHHHHHHH
Q 012124 398 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--------------DDTC-------IRISYAA--SLTTLQAAV 454 (470)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~--------------~~~~-------iRls~~~--~~~~i~~~l 454 (470)
.. +..++.+.|.+ .||.+.+...-. .++. ||+++.. +++++++++
T Consensus 309 ~~-----------~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~ 376 (424)
T 2po3_A 309 GI-----------HRDLVMEVLKA-EGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVA 376 (424)
T ss_dssp SS-----------CHHHHHHHHHH-TTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHH
T ss_pred hh-----------hHHHHHHHHHH-CCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHH
Confidence 21 67788887765 599998732100 0122 6666444 899999999
Q ss_pred HHHHHHHHhh
Q 012124 455 ERIKKGLLTL 464 (470)
Q Consensus 455 ~~l~~~l~~~ 464 (470)
+.|++++++.
T Consensus 377 ~~L~~~~~~~ 386 (424)
T 2po3_A 377 DLLRLCATRG 386 (424)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 9999887653
No 126
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=100.00 E-value=1.6e-32 Score=272.49 Aligned_cols=334 Identities=13% Similarity=0.088 Sum_probs=245.4
Q ss_pred cCCCeEEccCCC--CCCC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||+.|. ..+. .++.+.+++.+++.+..+.| ..+..++++.+++++.+..| +++|++|+|+++++.
T Consensus 34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~----~~~v~~~~gg~ea~~ 107 (395)
T 3nx3_A 34 KAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTS--NLYYNENIAAAAKNLAKASA----LERVFFTNSGTESIE 107 (395)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCC--TTSBCHHHHHHHHHHHHHHT----CSEEEEESSHHHHHH
T ss_pred CCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccc--cccCCHHHHHHHHHHHHhcC----CCeEEEeCCHHHHHH
Confidence 456789999984 3344 37899999999887643333 23445777777777777665 579999999999999
Q ss_pred HHHHHhc-------CCCCeEEEcCCCCCChHHHHHHcC-------------CEEEEecCcCCCCCccCHHhHhhhccCCc
Q 012124 169 QAVLAVC-------SPGDEVIIPAPFWVSYPEMARIAD-------------ATPVILPTRISENFLLDPKVLESKLTEKS 228 (470)
Q Consensus 169 ~~~~~l~-------~~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 228 (470)
.+++.+. .++|.|++.+|+|+++.......+ .++..++. .|++.|++++++++
T Consensus 108 ~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~~ 180 (395)
T 3nx3_A 108 GAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY-------NDISSVEKLVNEKT 180 (395)
T ss_dssp HHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-------TCHHHHHTTCCTTE
T ss_pred HHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-------CCHHHHHHhccCCe
Confidence 9998775 457999999999998765444332 34555553 28999999999888
Q ss_pred eEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccc
Q 012124 229 RLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 307 (470)
Q Consensus 229 ~~i~l~~p~nPtG~~-~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G 307 (470)
++|++..++|++|.. ++.+++++|.++|++| |+++|+||+|.+|...+.. ...... +....+.||||.++ .|
T Consensus 181 ~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~Dev~~~~g~~g~~-~~~~~~----~~~~d~~t~sK~~~-~G 253 (395)
T 3nx3_A 181 CAIILESVQGEGGINPANKDFYKALRKLCDEK-DILLIADEIQCGMGRSGKF-FAYEHA----QILPDIMTSAKALG-CG 253 (395)
T ss_dssp EEEEEESEECTTSCEECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGG----TCCCSEEEECGGGT-TT
T ss_pred EEEEEeCccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEecccCCCcCCcc-hhHHhc----CCCCCEEEeccccc-CC
Confidence 888887777777765 7899999999999999 9999999999986544321 111111 22223568999998 69
Q ss_pred ceeeEEEcCHHH-HHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC
Q 012124 308 WRLGYIAGPKHF-VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 386 (470)
Q Consensus 308 ~r~G~~~~~~~~-~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 386 (470)
+|+||+++++++ ++.+.......+++.+++.+.++.++++.... +++.++.++..+..++.+.+.+.+++.+....+
T Consensus 254 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~- 331 (395)
T 3nx3_A 254 LSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKE-EKILENVNKLTPYLEQSLDELINEFDFCKKRKG- 331 (395)
T ss_dssp SCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE-
T ss_pred CceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe-
Confidence 999999999998 77776554456778899999999988874211 344555555555556666665555554444333
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~ 463 (470)
.|.++|+.+++.. +..++++.|+++ ||.+.|+. ++++|++++. +++++++++++|++++++
T Consensus 332 ~g~~~~~~~~~~~-----------~~~~~~~~l~~~-Gi~v~~~~----~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 332 LGFMQGLSLDKSV-----------KVAKVIQKCQEN-ALLLISCG----ENDLRFLPPLILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp ETTEEEEEECTTS-----------CHHHHHHHHHHT-TEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEeCCcc-----------hHHHHHHHHHHC-CCEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 3556888887531 577888888766 99999874 6799998665 999999999999999874
No 127
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=100.00 E-value=2.3e-32 Score=273.51 Aligned_cols=333 Identities=12% Similarity=0.129 Sum_probs=243.8
Q ss_pred cCCCeEEccCCC--CCCC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||+.|. ..+. .++.+.+++.+++.+.. .+ ...+..++++.+++.+.+..| .++|++|+|++++++
T Consensus 55 ~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~-~~-~~~~~~~~~~~l~~~la~~~g----~~~v~~~~ggteA~~ 128 (420)
T 2pb2_A 55 QGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLW-HT-SNVFTNEPALRLGRKLIDATF----AERVLFMNSGTEANE 128 (420)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCC-CC-CTTSCCHHHHHHHHHHHHHSS----CSEEEEESSHHHHHH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhcc-cc-cCccCCHHHHHHHHHHHhhCC----CCeEEEeCCHHHHHH
Confidence 466789998883 2222 47889999999986532 22 112345677778888777665 479999999999999
Q ss_pred HHHHHhcC-------CC-CeEEEcCCCCCChHH-HHHHcCCE------------EEEecCcCCCCCccCHHhHhhhccCC
Q 012124 169 QAVLAVCS-------PG-DEVIIPAPFWVSYPE-MARIADAT------------PVILPTRISENFLLDPKVLESKLTEK 227 (470)
Q Consensus 169 ~~~~~l~~-------~g-d~Vlv~~p~y~~~~~-~~~~~g~~------------~~~v~~~~~~~~~~d~~~l~~~l~~~ 227 (470)
.+++.+.. +| ++|++.+|+|+++.. .+...|.+ +..+|. .|++.|+++++++
T Consensus 129 ~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~le~~i~~~ 201 (420)
T 2pb2_A 129 TAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF-------NDLHAVKAVMDDH 201 (420)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-------TCHHHHHHHCCTT
T ss_pred HHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-------CCHHHHHHHhccC
Confidence 99998865 77 599999999988754 44455553 455553 3899999999889
Q ss_pred ceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccc
Q 012124 228 SRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306 (470)
Q Consensus 228 ~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~ 306 (470)
+++|++++++|++|. +++.+++++|.++|++| |++||+||+|.++.+.+... .+..+.- ...++ ||||.++ +
T Consensus 202 ~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~-gi~lI~Dev~~g~~~~g~~~-~~~~~~~-~~dii---t~sK~l~-~ 274 (420)
T 2pb2_A 202 TCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEH-QALLVFDEVQCGMGRTGDLF-AYMHYGV-TPDIL---TSAKALG-G 274 (420)
T ss_dssp EEEEEECSEETTTTSEECCHHHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSS-HHHHHTC-CCSEE---EECGGGG-T
T ss_pred ceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHc-CCEEEEEcCCcCcccCCcHH-HHHhcCC-CCCeE---Eeccccc-C
Confidence 999998888898884 69999999999999999 99999999998876544321 1111111 12232 7899998 9
Q ss_pred cceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC----CCCee
Q 012124 307 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EGVKM 382 (470)
Q Consensus 307 G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~ 382 (470)
|+|+||+++++++++.+.......+++.+++.|.++.++|+... + ++..+.++++++++.+.|+++ +.+..
T Consensus 275 G~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~---~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 349 (420)
T 2pb2_A 275 GFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIIN---T--PEVLQGIHTKRQQFVQHLQAIDEQFDIFSD 349 (420)
T ss_dssp TSCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHS---S--HHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred CCceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHH---h--ccHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 99999999999888776554444567789999999988887521 1 355666777777777777654 33333
Q ss_pred cCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHHH
Q 012124 383 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKKG 460 (470)
Q Consensus 383 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~~~l~~l~~~ 460 (470)
..+. |.++|++++.... .+..++.+.|+++ ||.+.|+. ++++|+++. .+++++++++++|+++
T Consensus 350 ~~~~-g~~~~v~~~~~~~---------~~~~~l~~~l~~~-Gi~v~~~~----~~~iRl~~~~~~t~eei~~~~~~l~~~ 414 (420)
T 2pb2_A 350 IRGM-GLLIGAELKPKYK---------GRARDFLYAGAEA-GVMVLNAG----ADVMRFAPSLVVEEADIHEGMQRFAQA 414 (420)
T ss_dssp EEEE-TTEEEEEECGGGT---------TCHHHHHHHHHHT-TEECEESS----TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEec-ceEEEEEECCCch---------HHHHHHHHHHHHC-CCEEEeCC----CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3333 5557888864310 1467888888875 99999974 578999975 4999999999999999
Q ss_pred HHhh
Q 012124 461 LLTL 464 (470)
Q Consensus 461 l~~~ 464 (470)
++++
T Consensus 415 l~~~ 418 (420)
T 2pb2_A 415 VGKV 418 (420)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 128
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=100.00 E-value=1e-32 Score=277.78 Aligned_cols=354 Identities=14% Similarity=0.063 Sum_probs=243.5
Q ss_pred cCCCeEEccCCCCC--CC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCC-CcEEEecChHHHH
Q 012124 92 AGVSVIRLAAGEPD--FD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSI 167 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~-~~i~it~g~~~al 167 (470)
+|+.++||+.|.+. +. .++.+.+++.+++.+. ..|....|..++++++++++.+.++. .. ++|++|+|+++++
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~v~~~~ggsea~ 117 (439)
T 3dxv_A 41 NGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANP-AGATILSASNAPAVTLAERLLASFPG--EGTHKIWFGHSGSDAN 117 (439)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSC-SCSCSSSSEEHHHHHHHHHHHHTTTC--TTTEEEEEESSHHHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhc-cCccccccCCHHHHHHHHHHHHhCCC--CCCCEEEEeCCHHHHH
Confidence 46678999999873 33 4889999999998764 45655677889999999999887653 34 7999999999999
Q ss_pred HHHHHHh--cCCCCeEEEcCCCCCChHHHHHHcCCE-E--------------EEecCcCCCCCcc----CHHhHhhhc--
Q 012124 168 LQAVLAV--CSPGDEVIIPAPFWVSYPEMARIADAT-P--------------VILPTRISENFLL----DPKVLESKL-- 224 (470)
Q Consensus 168 ~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~-~--------------~~v~~~~~~~~~~----d~~~l~~~l-- 224 (470)
..+++.+ ..+++.|++.+|+|++........+.. . ..+|.+.. .... |++.|++++
T Consensus 118 ~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~ 196 (439)
T 3dxv_A 118 EAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPY-RNDPTGDAILTLLTEKLAA 196 (439)
T ss_dssp HHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCB-TTBTTSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcc-cccccHHHHHHHHHHHHHh
Confidence 9999885 346678999999998776655444322 1 23333211 1111 689999998
Q ss_pred --cCCceEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCc
Q 012124 225 --TEKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 301 (470)
Q Consensus 225 --~~~~~~i~l~~p~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK 301 (470)
.+++++|+++.++|++|... +.+++++|.++|++| |++||+||+|.+|.+.+.. ..+....- ... +.||||
T Consensus 197 ~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DE~~~g~g~~g~~-~~~~~~~~-~~d---i~s~sK 270 (439)
T 3dxv_A 197 VPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAH-GILVVCDEVKVGLARSGRL-HCFEHEGF-VPD---ILVLGK 270 (439)
T ss_dssp SCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTCTTTTSSS-SGGGGTTC-CCS---EEEECG
T ss_pred cCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCchh-hHHHhcCC-CCC---EEEEcc
Confidence 45677787877788888755 566699999999999 9999999999986544321 11111111 122 239999
Q ss_pred ccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCe
Q 012124 302 AFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 381 (470)
Q Consensus 302 ~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~ 381 (470)
.++ +|+|+||+++++++++.+.......++ .+++.+.++.++++.... +++.++.++..+..++.+.+.+.+++.+.
T Consensus 271 ~~~-~G~riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 347 (439)
T 3dxv_A 271 GLG-GGLPLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLAVLETIDR-DDLPAMAERKGRLLRDGLSELAKRHPLIG 347 (439)
T ss_dssp GGG-TTSCCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEE
T ss_pred hhc-CCcceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 998 799999999999998877665445566 899999999888874211 23344444444444444444444455444
Q ss_pred ecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 012124 382 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKK 459 (470)
Q Consensus 382 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~ 459 (470)
...+. |.++|+.+.+....... ...+..++++.|+++ ||.+.|+..+ ++++|++++. +++++++++++|++
T Consensus 348 ~~~~~-g~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~-Gv~v~~~~~~--~~~iRi~~~~~~t~e~i~~~l~~l~~ 420 (439)
T 3dxv_A 348 DIRGR-GLACGMELVCDRQSREP---ARAETAKLIYRAYQL-GLVVYYVGMN--GNVLEFTPPLTITETDIHKALDLLDR 420 (439)
T ss_dssp EEEEE-TTEEEEEEEEETTTTEE---CHHHHHHHHHHHHHH-TEECEEESTT--SCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEE-EEEEEEEEecCccccCC---CHHHHHHHHHHHHHC-CcEEeecCCC--CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44444 55577776211000000 001356788888876 9999998543 4799998764 89999999999999
Q ss_pred HHHhhC
Q 012124 460 GLLTLR 465 (470)
Q Consensus 460 ~l~~~~ 465 (470)
+++++.
T Consensus 421 ~l~~~~ 426 (439)
T 3dxv_A 421 AFSELS 426 (439)
T ss_dssp HHHTGG
T ss_pred HHHHHh
Confidence 998764
No 129
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=100.00 E-value=1.4e-32 Score=276.30 Aligned_cols=352 Identities=12% Similarity=0.066 Sum_probs=238.8
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|++.+.+ ++.. ++.+.+++.+++.+... + ...+..+++..+++.+.+.++. ++++|++|+|++++++
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~-~~~~~~~~~~~l~~~la~~~~~--~~~~v~~~~gg~ea~~ 116 (433)
T 1zod_A 41 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH-L-FSEMLSRPVVDLATRLANITPP--GLDRALLLSTGAESNE 116 (433)
T ss_dssp TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCC-C-CTTCCCHHHHHHHHHHHHHSCT--TCCEEEEESCHHHHHH
T ss_pred CCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCcc-c-ccccCCHHHHHHHHHHHHhCCC--CcCEEEEeCchHHHHH
Confidence 4566789987764 3333 78999999998876422 2 2233446777777777776664 5789999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHHHHHc--------------CCEEEEecCcCCCCC--------ccCHHhHhhhc
Q 012124 169 QAVLAVC--SPGDEVIIPAPFWVSYPEMARIA--------------DATPVILPTRISENF--------LLDPKVLESKL 224 (470)
Q Consensus 169 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~--------------g~~~~~v~~~~~~~~--------~~d~~~l~~~l 224 (470)
.+++.+. ..+|.|++.+|+|+++....... |...++++......+ .+|++.|++++
T Consensus 117 ~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l 196 (433)
T 1zod_A 117 AAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLI 196 (433)
T ss_dssp HHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHH
Confidence 9998653 23589999999999876543322 344443332111112 24689999988
Q ss_pred c----CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEecc
Q 012124 225 T----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF 299 (470)
Q Consensus 225 ~----~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~ 299 (470)
+ +++++|+++..+||||. ..+.+++++|.++|++| |++||+||+|.+|.+.+.. ..+.... ....+.||
T Consensus 197 ~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DEv~~~~g~~g~~-~~~~~~~----~~~di~s~ 270 (433)
T 1zod_A 197 DRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEAR-GMLLILDEAQTGVGRTGTM-FACQRDG----VTPDILTL 270 (433)
T ss_dssp HHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-STHHHHT----CCCSEEEE
T ss_pred HhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHh-CCEEEEeccccCCCcCchH-hHHhhcC----CCCCEEEe
Confidence 6 45555554333689996 67899999999999999 9999999999987544321 1111111 11124589
Q ss_pred CcccccccceeeEEEcCHHHHHHHHHHhhh--ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-
Q 012124 300 SKAFAMTGWRLGYIAGPKHFVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE- 376 (470)
Q Consensus 300 sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~--~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~- 376 (470)
||.++ +|+|+||+++++++++.+...... .+++.+++.|.++.++++.. .+ +...++++++++.+.+.|++
T Consensus 271 sK~~~-~G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~---~~--~~~~~~~~~~~~~l~~~l~~l 344 (433)
T 1zod_A 271 SKTLG-AGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVV---QR--DGLVARANVMGDRLRRGLLDL 344 (433)
T ss_dssp CHHHH-TTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccc-CCCCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHH
Confidence 99998 699999999999999888763322 56678999999888888631 11 12344455555555555544
Q ss_pred ---CCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHH
Q 012124 377 ---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQ 451 (470)
Q Consensus 377 ---~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~ 451 (470)
++.+....+. |.|+|+++++....... ...+..++++.|+++ ||.+.||..|+.++++||+++ .++++++
T Consensus 345 ~~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~---~~~~~~~~~~~l~~~-Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~ 419 (433)
T 1zod_A 345 MERFDCIGDVRGR-GLLLGVEIVKDRRTKEP---ADGLGAKITRECMNL-GLSMNIVQLPGMGGVFRIAPPLTVSEDEID 419 (433)
T ss_dssp HHHCTTEEEEEEE-TTEEEEEEEEETTTTEE---CTTHHHHHHHHHHHT-TEECCEECCTTSCCEEEECCCTTCCHHHHH
T ss_pred HHhCCCeEEEEEE-EEEEEEEEecCccccCC---ChHHHHHHHHHHHHC-CCeEeccCCCCCCCEEEEECCcCCCHHHHH
Confidence 3434333343 55578888642000000 001367788888765 999999987765689999776 3999999
Q ss_pred HHHHHHHHHHHhh
Q 012124 452 AAVERIKKGLLTL 464 (470)
Q Consensus 452 ~~l~~l~~~l~~~ 464 (470)
+++++|+++++++
T Consensus 420 ~~l~~l~~~l~~~ 432 (433)
T 1zod_A 420 LGLSLLGQAIERA 432 (433)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 130
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=100.00 E-value=5.4e-32 Score=274.05 Aligned_cols=358 Identities=12% Similarity=0.032 Sum_probs=254.8
Q ss_pred cCCCeEEccCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+|||+.|. ..+.. ++.+++++.+++.+....|....+..+++.++++++.+..+ .+.++|++|+|++++++
T Consensus 49 ~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~gGseA~~ 126 (460)
T 3gju_A 49 NGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAP--KGMSRVYFGLSGSDANE 126 (460)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSC--TTEEEEEEESSHHHHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhCC--CCcCEEEEeCchHHHHH
Confidence 467789999883 33333 78999999998876555565556667889999999887654 46689999999999999
Q ss_pred HHHHHhcC--------CCCeEEEcCCCCCChHHHHHHcCC-------------EEEEecCcC--C-CCCccC--------
Q 012124 169 QAVLAVCS--------PGDEVIIPAPFWVSYPEMARIADA-------------TPVILPTRI--S-ENFLLD-------- 216 (470)
Q Consensus 169 ~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~--~-~~~~~d-------- 216 (470)
.+++.+.. +++.|++.+|+|+++.......+. .+..++... . ++++.+
T Consensus 127 ~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~ 206 (460)
T 3gju_A 127 TNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHC 206 (460)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHH
Confidence 99998864 469999999999988765544322 234444321 1 112233
Q ss_pred HHhHhhhcc----CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCC
Q 012124 217 PKVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 291 (470)
Q Consensus 217 ~~~l~~~l~----~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~ 291 (470)
++.|+++++ +++++|++..++|++|. +++.+.+++|.++|++| |+++|+||+|.+|.+.+.. .......
T Consensus 207 ~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~gr~g~~-~~~~~~~---- 280 (460)
T 3gju_A 207 ADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKY-DVLLVADEVVTGFGRLGTM-FGSDHYG---- 280 (460)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-CHHHHHT----
T ss_pred HHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCccccc-chHhhcC----
Confidence 588888885 45666666666788887 77899999999999999 9999999999987554421 1111111
Q ss_pred ceEEEeccCccccccc-ceeeEEEcCHHHHHHHHHH-------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012124 292 RTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363 (470)
Q Consensus 292 ~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~ 363 (470)
....+.+|||.++ .| +|+||+++++++++.+... ....+++.+++.|.++.++|+.... +++++++++..
T Consensus 281 ~~pdi~t~sK~l~-gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~ 358 (460)
T 3gju_A 281 IKPDLITIAKGLT-SAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDE-MDLVTNAGETG 358 (460)
T ss_dssp CCCSEEEECGGGT-TTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHH
T ss_pred CCCCeeeeehhhc-CCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence 1112457999997 67 8999999999999988642 3345778899999999999874221 45677777777
Q ss_pred HHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCC-CCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEE
Q 012124 364 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG-KIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 442 (470)
Q Consensus 364 ~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls 442 (470)
+..++.+.+.+.+++.+....+.+ .++++.+.+..... .... ......++++.|+++ ||.+.|+. .++++||+
T Consensus 359 ~~~~~~l~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~---~~~~iRi~ 432 (460)
T 3gju_A 359 AYFRAELAKAVGGHKNVGEVRGDG-MLAAVEFVADKDDR-VFFDASQKIGPQVATALAAS-GVIGRAMP---QGDILGFA 432 (460)
T ss_dssp HHHHHHHHHHHTTSTTEEEEEEET-TEEEEEECSBTTTT-BCCCGGGCHHHHHHHHHHHT-TEECEECS---SSCEEEEC
T ss_pred HHHHHHHHHHHhcCCCeEEEeeee-EEEEEEEccCcccc-ccccchHHHHHHHHHHHHHC-CeEEecCC---CCCEEEEE
Confidence 777888888887776555554444 45677775421000 0000 000145778888766 99999975 35799999
Q ss_pred ee--cCHHHHHHHHHHHHHHHHhhC
Q 012124 443 YA--ASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 443 ~~--~~~~~i~~~l~~l~~~l~~~~ 465 (470)
+. .+++++++++++|+++++++.
T Consensus 433 ~~~~~t~e~i~~~l~~l~~~l~~~~ 457 (460)
T 3gju_A 433 PPLCLTREQADIVVSKTADAVKSVF 457 (460)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 55 499999999999999998764
No 131
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=100.00 E-value=4.1e-32 Score=268.89 Aligned_cols=322 Identities=17% Similarity=0.232 Sum_probs=242.1
Q ss_pred CCCCCCCC-h---HHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh-c
Q 012124 101 AGEPDFDT-P---VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-C 175 (470)
Q Consensus 101 ~g~~~~~~-~---~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l-~ 175 (470)
.++|++++ | +.+++++.+.+..+...|.+..+..++|+++++++. . +++|++++| ++++.+++.++ +
T Consensus 4 ~~~p~f~~~p~~~~~~~~a~~~~l~~~~~~~~~~~~~~~l~~~la~~~~----~---~~~i~~~sG-t~al~~~l~~l~~ 75 (388)
T 1b9h_A 4 RKAPEFPAWPQYDDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHG----A---AHALAVTNG-THALELALQVMGV 75 (388)
T ss_dssp -CCCCCCCSSCCCHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTT----C---SEEEEESCH-HHHHHHHHHHTTC
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHhC----C---CeEEEeCCH-HHHHHHHHHHcCC
Confidence 35677776 6 899999999998755567677889999999999973 2 256777776 89999999999 8
Q ss_pred CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHH
Q 012124 176 SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARI 255 (470)
Q Consensus 176 ~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~ 255 (470)
++||+|++++|+|+++...++..|++++.++++++ ++.+|++.|++++++++++|+ |+||||.+.+ +++|.++
T Consensus 76 ~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~---l~~i~~l 148 (388)
T 1b9h_A 76 GPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAA-TYNLDPEAVAAAVTPRTKVIM---PVHMAGLMAD---MDALAKI 148 (388)
T ss_dssp CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTT-TCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCC---HHHHHHH
T ss_pred CCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCC-cCCCCHHHHHHhcCcCceEEE---EeCCccCcCC---HHHHHHH
Confidence 99999999999999999999999999999999753 467999999999988888776 9999999988 8899999
Q ss_pred HHhCCCEEEEEeccccc-cccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHH-H--HHHHHHHhhhc-
Q 012124 256 VAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-F--VAACNKIQSQF- 330 (470)
Q Consensus 256 ~~~~~~~~iI~Dd~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~-~--~~~l~~~~~~~- 330 (470)
|++| |++||+|++|+. ..+.+. .+..+ .++.+.||||..+++|.|+||++++++ + ++.+.......
T Consensus 149 a~~~-~~~li~D~a~~~g~~~~~~---~~~~~-----~~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~ 219 (388)
T 1b9h_A 149 SADT-GVPLLQDAAHAHGARWQGK---RVGEL-----DSIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGR 219 (388)
T ss_dssp HHHH-TCCBCEECTTCTTCEETTE---EGGGS-----SSCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTC
T ss_pred HHHc-CCEEEEecchhcCCccCCe---ecccc-----cceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCC
Confidence 9999 999999999986 333221 22222 158899999666566779999999876 5 55554433210
Q ss_pred --------------cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC------CCceEE
Q 012124 331 --------------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE------PQGAFY 390 (470)
Q Consensus 331 --------------~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~------~~~g~~ 390 (470)
+...+.+...+ ++.. .+++++..+.++++++++.+.|++++|+.+.. +.++++
T Consensus 220 ~~~~~~~~~~~~g~~~~~~~~~~a~---~~~~----~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 292 (388)
T 1b9h_A 220 PRDDRRYFHKIAGSNMRLNEFSASV---LRAQ----LARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYM 292 (388)
T ss_dssp CTTCSSCCCCSCCCBCBCBHHHHHH---HHHH----HTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSE
T ss_pred CccCccceeecccccCCcCHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEE
Confidence 01123332222 2221 34466777888889999999999888887764 355788
Q ss_pred EeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC----------------------C-------CCcEEE
Q 012124 391 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG----------------------D-------DTCIRI 441 (470)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~----------------------~-------~~~iRl 441 (470)
+|+.++...+ .+..++.+.|.++ ||.+.++..-. . .+.+||
T Consensus 293 ~~~~~~~~~~---------~~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 362 (388)
T 1b9h_A 293 AMFRIPGLTE---------ERRNALVDRLVEA-GLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWL 362 (388)
T ss_dssp EEEECTTCCH---------HHHHHHHHHHHHT-TCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEE
T ss_pred EEEEeCCcCc---------ccHHHHHHHHHHC-CCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEe
Confidence 9999975200 0356788888765 99998864310 0 125899
Q ss_pred Eeec---CHHHHHHHHHHHHHHHHh
Q 012124 442 SYAA---SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 442 s~~~---~~~~i~~~l~~l~~~l~~ 463 (470)
++.. ++++++.+++.|++++++
T Consensus 363 ~~~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 363 HHRVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp EGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 9875 789999999999998864
No 132
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=100.00 E-value=3.7e-32 Score=267.93 Aligned_cols=331 Identities=12% Similarity=0.025 Sum_probs=241.2
Q ss_pred EEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcC
Q 012124 97 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS 176 (470)
Q Consensus 97 i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~ 176 (470)
++|+.| +.++|+.+++++.+.+. ..| ..+..++.+.+.+++.+.+|.+.+.+.+++|+|+++++.++++++++
T Consensus 21 ~~~~pg--p~~~~~~v~~a~~~~~~---~~~--~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~ 93 (376)
T 3f0h_A 21 LNFTVG--PVMSSEEVRAIGAEQVP---YFR--TTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFT 93 (376)
T ss_dssp EECSSS--SCCCCHHHHHHHTSCCC---CCS--SHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCC
T ss_pred eeecCC--CCCCcHHHHHHhcCCCC---CCC--CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccC
Confidence 444443 23457888877766431 122 23455777888888888788653334556699999999999999999
Q ss_pred CCCeEEEcCCCCCChH--HHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHH
Q 012124 177 PGDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 254 (470)
Q Consensus 177 ~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~ 254 (470)
+||+|++++|+|++.. ..+...|++++.++.+ .++.+|++.|+++++++++++++++|+||||.+++ +++|.+
T Consensus 94 ~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~ 168 (376)
T 3f0h_A 94 KKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKLE--HGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYD---TMMIGE 168 (376)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTCCEEEEECC--TTCCCCHHHHHTTTTSCCCEEEEESEETTTTEECC---HHHHHH
T ss_pred CCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCC--CCCCCCHHHHHHhhccCceEEEEecccCCcceecC---HHHHHH
Confidence 9999999999777654 3467789999999986 34669999999999889999999999999999999 889999
Q ss_pred HHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhh------
Q 012124 255 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS------ 328 (470)
Q Consensus 255 ~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~------ 328 (470)
+|++| |++||+|++++.+... ..+.. .+..+++.|+||.++ .+..+|++++++++++.+.....
T Consensus 169 l~~~~-~~~li~D~~~~~~~~~----~~~~~----~~~d~~~~s~~K~l~-~~~G~g~~~~~~~~~~~~~~~~~~~~~~~ 238 (376)
T 3f0h_A 169 FCKKN-NMFFVCDCVSAFLADP----FNMNE----CGADVMITGSQKVLA-CPPGISVIVLAPRGVERVEKSKVRTMYFD 238 (376)
T ss_dssp HHHHT-TCEEEEECTTTTTTSC----CCHHH----HTCSEEEEETTTTTC-CCSSCEEEEECHHHHHHHHTCCCCCSTTC
T ss_pred HHHHc-CCEEEEEcCccccCcc----ccccc----cCccEEEecCccccc-CCCceEEEEECHHHHHHhhcCCCCceeec
Confidence 99999 9999999998863221 11111 234589999999997 33347889999999887764211
Q ss_pred -----------hccCCCChHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeecc
Q 012124 329 -----------QFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 396 (470)
Q Consensus 329 -----------~~~~~~~~~~q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~ 396 (470)
.....++...+.++.++++.- .+. .++++++.++++++++.+.|+++ |+.+..+.....++...+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~ 315 (376)
T 3f0h_A 239 LKDALKNQERGQTPFTPAVGILLQINERLKEI--KKHGGADAEVARIASQAADFRAKIKDL-PFELVSESPANGVTSVHP 315 (376)
T ss_dssp HHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTTTS-SEEECCSSBBTTEEEEEE
T ss_pred HHHHHhhcccCCCCCCCcHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHHHHHHHHHHHc-CCccCccccCceEEEEeC
Confidence 112234444445555555431 022 57888999999999999999987 676654433222222123
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012124 397 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~ 463 (470)
... +..++.+.|.+++||.+.||.....++++|+++.. +++++++++++|++++++
T Consensus 316 ~~~-----------~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 316 TTA-----------NAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp SSS-----------CHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred CCC-----------CHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 221 67889999988779999998543456899999974 899999999999999864
No 133
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=100.00 E-value=1.8e-33 Score=279.66 Aligned_cols=332 Identities=15% Similarity=0.098 Sum_probs=227.2
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCC----CCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGF----TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQ 169 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~----~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~ 169 (470)
++.|.|..+.+. ++|+.+.+++.+.+.+.. ..|....+..++.+.+.+++.+.+| +++++|++|+|+++++.+
T Consensus 19 ~~~iyld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~g~t~al~~ 95 (400)
T 3vax_A 19 SHMTYLDAAATT-RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVS--AEPDELIFTSGATESNNI 95 (400)
T ss_dssp ---CCCCCCCCS-SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTT--CCGGGEEEESCHHHHHHH
T ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcC--CCCCcEEEeCCHHHHHHH
Confidence 345666666655 467888888888875411 1121122334455555566655566 467899999999999999
Q ss_pred HHHHhc----CCCC-eEEEcCCCCCChHHHHHH---cCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcc
Q 012124 170 AVLAVC----SPGD-EVIIPAPFWVSYPEMARI---ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG 241 (470)
Q Consensus 170 ~~~~l~----~~gd-~Vlv~~p~y~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG 241 (470)
++++++ ++|| +|++++++|+++...+.. .|++++.++++. ++.+|++.|++++++++++|++++|+||||
T Consensus 96 ~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~nptG 173 (400)
T 3vax_A 96 ALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP--SGRISVEGVMERLRPDTLLVSLMHVNNETG 173 (400)
T ss_dssp HHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT--TCCCCHHHHHTTCCTTEEEEECCSBCTTTC
T ss_pred HHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCC--CCCcCHHHHHHhcCCCceEEEEECCCCCce
Confidence 999987 8999 999999999988765554 699999999864 456899999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEE-cCHH-H
Q 012124 242 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKH-F 319 (470)
Q Consensus 242 ~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~-~~~~-~ 319 (470)
.+++ +++|.++|+++ |++||+|++|+... ....+.. . ..+++.|+||.+|.+| +|+++ ++++ +
T Consensus 174 ~~~~---l~~i~~la~~~-~~~li~D~a~~~~~----~~~~~~~----~-~d~~~~s~~K~~g~~g--~g~~~~~~~~~~ 238 (400)
T 3vax_A 174 VIQP---VAELAQQLRAT-PTYLHVDAAQGYGK----VPGDLTT----P-IDMISISGHKIGAPKG--VGALVTRRREEM 238 (400)
T ss_dssp BBCC---HHHHHHHHTTS-SCEEEEECTTTTTT----SGGGGGS----C-CSEEEEETGGGTSCSS--CEEEEECBCSSS
T ss_pred eeCc---HHHHHHHHHhc-CCEEEEEhhhhcCC----CCcChhh----c-CcEEEEeHHHhCCCCc--eEEEEEecchhc
Confidence 9999 78999999999 99999999998421 1112221 1 4589999999777445 67777 6551 1
Q ss_pred H---HHHHHH-------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc--
Q 012124 320 V---AACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG-- 387 (470)
Q Consensus 320 ~---~~l~~~-------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~-- 387 (470)
. ..+... ......+.+...+.++..+++. ..++++++++.++++++++.+.|+ .+|+.+..+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~ 314 (400)
T 3vax_A 239 DDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKI---FEAEHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDHV 314 (400)
T ss_dssp TTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH---HHHSHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTSB
T ss_pred cccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCcccC
Confidence 1 111111 1122344567777767677764 245678899999999999999999 88998876654
Q ss_pred -eEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEe-ec-
Q 012124 388 -AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISY-AA- 445 (470)
Q Consensus 388 -g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-------------------~~~iRls~-~~- 445 (470)
+.++++.++.. +..++.+.|. + ||.+.+|..|.. ++++||++ +.
T Consensus 315 ~~~~~~~~~~~~------------~~~~l~~~L~-~-gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~ 380 (400)
T 3vax_A 315 VPHILNLSFEDV------------DAEAFLVTLK-D-LVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQ 380 (400)
T ss_dssp CTTEEEEECTTC------------CHHHHHHHHH-H-HHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC-
T ss_pred CCCEEEEEeCCC------------CHHHHHHHHh-c-CcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCC
Confidence 33466677643 7788988887 4 999999865532 38999999 64
Q ss_pred -CHHHHHHHHHHHHHHHHh
Q 012124 446 -SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 446 -~~~~i~~~l~~l~~~l~~ 463 (470)
+++++++++++|++++++
T Consensus 381 ~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 381 ATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp -------------------
T ss_pred CCHHHHHHHHHHHHHHhcc
Confidence 789999999999988764
No 134
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=1.1e-32 Score=278.34 Aligned_cols=356 Identities=15% Similarity=0.098 Sum_probs=249.4
Q ss_pred cCCCeEEccCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+|||+.|. ..+.. ++.+.+++.+++.+. ..|....+..+++.++++++.+..+.. ..++|++|+|++++++
T Consensus 62 ~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~~~sGseA~~ 139 (453)
T 4ffc_A 62 DGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHF-THTCFMVTPYEQYVQVAELLNALTPGD-HDKRTALFNSGAEAVE 139 (453)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHC-SCCTTTTSCCHHHHHHHHHHHHHSSCS-SCEEEEEESSHHHHHH
T ss_pred CCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhc-cccccCcCCCHHHHHHHHHHHHhCCCC-CCcEEEEeCcHHHHHH
Confidence 466789999884 44444 899999999998764 346555677788888888888776632 3579999999999999
Q ss_pred HHHHHhcC--CCCeEEEcCCCCCChHHHHHHcCC--------------EEEEecCcC--CCCCccC--------HHhHhh
Q 012124 169 QAVLAVCS--PGDEVIIPAPFWVSYPEMARIADA--------------TPVILPTRI--SENFLLD--------PKVLES 222 (470)
Q Consensus 169 ~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~--------------~~~~v~~~~--~~~~~~d--------~~~l~~ 222 (470)
.+++.+.. .++.|++.+++|+++.......+. .+..+|... .+.++.+ ++.|++
T Consensus 140 ~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~ 219 (453)
T 4ffc_A 140 NAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIET 219 (453)
T ss_dssp HHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHH
Confidence 99987643 458999999999988766554322 344455431 1222233 466777
Q ss_pred hccCCceEEEEcCCCCCcc--cCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccC
Q 012124 223 KLTEKSRLLILCSPSNPTG--SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 300 (470)
Q Consensus 223 ~l~~~~~~i~l~~p~nPtG--~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~s 300 (470)
.+.++..+++++.|.|++| ...+.+.+++|.++|++| |++||+||+|.+|.+.+.. ...... +....+.|||
T Consensus 220 ~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~g~~g~~-~a~~~~----~~~pdi~t~s 293 (453)
T 4ffc_A 220 QIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASEN-GVVFIADEVQTGFARTGAW-FASEHE----GIVPDIVTMA 293 (453)
T ss_dssp HTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-STHHHH----TCCCSEEEEC
T ss_pred hcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHc-CCEEEEecCccCCCccccc-chhhhc----CCCcchHhhh
Confidence 7765666777778877666 456888999999999999 9999999999987554421 111111 2222356899
Q ss_pred cccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 012124 301 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 380 (470)
Q Consensus 301 K~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 380 (470)
|.++ .|+|+||+++++++++.+.......+++.+++.|.++.++|+.... +++.++.++..+..++.+.+.+.+++.+
T Consensus 294 K~~~-~G~~~G~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 371 (453)
T 4ffc_A 294 KGIA-GGMPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRE-LDLPARARAIEASVTSRLSALAEEVDII 371 (453)
T ss_dssp GGGG-TTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCSSE
T ss_pred hhhc-CCcCeEEEEECHHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 9998 6999999999999998887666667888999999999998874211 2344555555455555555555556554
Q ss_pred eecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHH
Q 012124 381 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIK 458 (470)
Q Consensus 381 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~ 458 (470)
....+ .|.++|+.+.+...... ......++++.|+++ ||.+.|+..| .+++|++++. +++++++++++|+
T Consensus 372 ~~~~~-~g~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~-Gv~v~~~~~~--~~~iRi~~~~~~t~e~i~~~l~~l~ 443 (453)
T 4ffc_A 372 GEVRG-RGAMLAIEIVKPGTLEP----DAALTKSIAAEALSQ-GVLILTCGTF--GNVIRLLPPLVIGDDLLDEGITALS 443 (453)
T ss_dssp EEEEE-ETTEEEEEEBCTTSCCB----CHHHHHHHHHHHHHT-TEECCEECTT--SCEEEECCCTTCCHHHHHHHHHHHH
T ss_pred EEEEe-eceEEEEEEecCcccCC----CHHHHHHHHHHHHhC-CCEEecCCCC--CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 44333 35567877743100000 001356778887766 9999997655 3689998764 8999999999999
Q ss_pred HHHHhhC
Q 012124 459 KGLLTLR 465 (470)
Q Consensus 459 ~~l~~~~ 465 (470)
++++++.
T Consensus 444 ~~l~~~~ 450 (453)
T 4ffc_A 444 DIIRAKA 450 (453)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9998765
No 135
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=100.00 E-value=1.1e-31 Score=262.97 Aligned_cols=327 Identities=13% Similarity=0.093 Sum_probs=247.8
Q ss_pred eEEccCCCCCCCChHHHHHHHHHHHHcCCCCCC-CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh
Q 012124 96 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYT-PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 174 (470)
Q Consensus 96 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~-~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l 174 (470)
.+.|..| +..+|+.+++++.+.+.+....|. ...+..++.+.+.+++.+.+|.. ++++|++|+|+++++.+++.++
T Consensus 5 ~~~~~p~--p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~al~~~~~~l 81 (362)
T 3ffr_A 5 KIYFTPG--PSELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELP-SNYEVLFLASATEIWERIIQNC 81 (362)
T ss_dssp CEEECSS--SCCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCC-TTEEEEEESCHHHHHHHHHHHH
T ss_pred ceeccCC--CcCCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEEeCCchHHHHHHHHhc
Confidence 3555554 223477788888888776553322 23344577778888888777864 5689999999999999999999
Q ss_pred cCCCCeEEEcCCCCCC-hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHH
Q 012124 175 CSPGDEVIIPAPFWVS-YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 253 (470)
Q Consensus 175 ~~~gd~Vlv~~p~y~~-~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~ 253 (470)
.++ +.+++..+.|.. +...++..|++++.++.+ .++.+|+|.|+ +++++++|++++|+||||.+++ +++|.
T Consensus 82 ~~~-~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~---l~~i~ 153 (362)
T 3ffr_A 82 VEK-KSFHCVNGSFSKRFYEFAGELGREAYKEEAA--FGKGFYPADIT--VPADAEIICLTHNETSSGVSMP---VEDIN 153 (362)
T ss_dssp CSS-EEEEEECSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCGGGCC--CCTTCCEEEEESEETTTTEECC---HHHHT
T ss_pred cCC-cEEEEcCcHHHHHHHHHHHHhCCCeEEEecC--CCCCCCHHHHh--ccCCccEEEEEcCCCCcceeCC---HHHHH
Confidence 988 556666666652 334677889999999985 34569999999 7789999999999999999999 78889
Q ss_pred HHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccc-cccceeeEEEcCHHHHHHHHHHhh----
Q 012124 254 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKIQS---- 328 (470)
Q Consensus 254 ~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~---- 328 (470)
++|++|||++||+|++|+.+... ..+. +..+++.|+||.++ .+| +|++++++++++.+.....
T Consensus 154 ~la~~~p~~~li~D~a~~~~~~~----~~~~------~~d~~~~s~~K~~~~~~G--~g~~~~~~~~~~~~~~~~~gg~~ 221 (362)
T 3ffr_A 154 TFRDKNKDALIFVDAVSSLPYPK----FDWT------KIDSVFFSVQKCFGLPAG--LGVWILNDRVIEKSKALLAKRKS 221 (362)
T ss_dssp TSGGGSTTSEEEEECTTTTTSSC----CCTT------SCSEEEEETTSTTCCCSC--CEEEEEEHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCCCEEEEecccccCCcc----cChh------HCcEEEEecccccCCCCc--eEEEEECHHHHHHhhhccccCCC
Confidence 99999867999999998753211 1111 24588999999997 666 6889999999888876543
Q ss_pred -----------------hccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC----Cc
Q 012124 329 -----------------QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP----QG 387 (470)
Q Consensus 329 -----------------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~----~~ 387 (470)
....+++...+.++..+++.- ....+++++++++++++++.+.|+++||+++..+ ..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~ 299 (362)
T 3ffr_A 222 IGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDM--LQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRS 299 (362)
T ss_dssp CCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBC
T ss_pred CcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHH--HHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcC
Confidence 113456777777776666531 0223678888999999999999999989887653 23
Q ss_pred eEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012124 388 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGL 461 (470)
Q Consensus 388 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l 461 (470)
++++|+.+++ +..++.+.|.++ ||.+.+|..+..++++|++++. ++++++++++.|++++
T Consensus 300 ~~~~~~~~~~-------------~~~~~~~~l~~~-gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 300 MTTIVANTTM-------------LPGEINKILEPF-DMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp SSEEEEEESS-------------CHHHHHHHHGGG-TEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CceEEEecCC-------------CHHHHHHHHHHC-CeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 5667888864 477899988877 9999998766667899999986 8899999999998764
No 136
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=100.00 E-value=1.3e-32 Score=273.23 Aligned_cols=329 Identities=14% Similarity=0.117 Sum_probs=237.8
Q ss_pred cCCCeEEccCCC--CCCC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
.|+.++||+.|. .++. +|+.+.+++.+++..... +.. ....++++.+++.+.+.+| +++++|++|+|+++++.
T Consensus 43 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~-~~~-~~~~~~~~~l~~~la~~~~--~~~~~v~~~~gg~~a~~ 118 (395)
T 1vef_A 43 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMA-MPQ-TLPTPMRGEFYRTLTAILP--PELNRVFPVNSGTEANE 118 (395)
T ss_dssp TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCC-CCT-TSCCHHHHHHHHHHHHTSC--TTEEEEEEESSHHHHHH
T ss_pred CCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCC-Ccc-ccCCHHHHHHHHHHHHhcC--CCcCEEEEcCcHHHHHH
Confidence 355689999885 3444 688999999998875321 111 1123455555555555555 36789999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChH-HHHHHcCCE------------EEEecCcCCCCCccCHHhHhhhccCCceEEEE
Q 012124 169 QAVLAVC--SPGDEVIIPAPFWVSYP-EMARIADAT------------PVILPTRISENFLLDPKVLESKLTEKSRLLIL 233 (470)
Q Consensus 169 ~~~~~l~--~~gd~Vlv~~p~y~~~~-~~~~~~g~~------------~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l 233 (470)
++++++. .+||.|++.+|+|++.. ..+...|.+ +..++. .|++.|++++++++++|++
T Consensus 119 ~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~i~~~~~~v~~ 191 (395)
T 1vef_A 119 AALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-------NDVEALKRAVDEETAAVIL 191 (395)
T ss_dssp HHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-------TCHHHHHHHCCTTEEEEEE
T ss_pred HHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCC-------CcHHHHHHHhccCEEEEEE
Confidence 9998764 67899999999997654 466667775 223332 4899999999888888877
Q ss_pred cCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcc-cccccCCCCCceEEEeccCcccccccceee
Q 012124 234 CSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLPGMWERTLTVNGFSKAFAMTGWRLG 311 (470)
Q Consensus 234 ~~p~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G 311 (470)
+.++||||..+ +.+++++|.++|++| |++||+||+|.++.+.+.... ...... .. +.||||.++ +|+|+|
T Consensus 192 ~~~~~~tG~~~~~~~~l~~i~~l~~~~-~~~li~Dea~~~~~~~g~~~~~~~~~~~---~d---~~s~sK~~~-~g~~~G 263 (395)
T 1vef_A 192 EPVQGEGGVRPATPEFLRAAREITQEK-GALLILDEIQTGMGRTGKRFAFEHFGIV---PD---ILTLAKALG-GGVPLG 263 (395)
T ss_dssp CSEETTTTSEECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSTHHHHTCC---CS---EEEECGGGG-TTSSCE
T ss_pred eCccCCCCccCCCHHHHHHHHHHHHHc-CCEEEEEecccCCccCCchhHhhhcCCC---CC---EEEEccccc-CCCceE
Confidence 66689999865 688999999999999 999999999997544332111 111221 12 228999998 699999
Q ss_pred EEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC-CeecCCCceEE
Q 012124 312 YIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG-VKMSEPQGAFY 390 (470)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~g~~ 390 (470)
|+++++++++.+.......+++++++.|.++.++++. ..+ .+..++++++++++.+.|++++. +....+..|++
T Consensus 264 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~---~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~~ 338 (395)
T 1vef_A 264 VAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRY---LER--TRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLM 338 (395)
T ss_dssp EEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHH---HHH--HTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETTE
T ss_pred EEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHH---HHh--CCHHHHHHHHHHHHHHHHHHhhcCceEEEEEEEEE
Confidence 9999998877665432344566889999888888874 122 45677788888899999987632 11112334567
Q ss_pred EeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012124 391 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGL 461 (470)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l 461 (470)
+|++++. +..++++.|.+++||.+.|+. ++++|++++. +++++++++++|++++
T Consensus 339 ~~~~~~~-------------~~~~l~~~l~~~~gi~v~~~~----~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 339 VGLELKE-------------KAAPYIARLEKEHRVLALQAG----PTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp EEEEESS-------------CSHHHHHHHHHHHCEECEESS----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEcC-------------hHHHHHHHHHHHCCeEEecCC----CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 8888864 356788888834499999862 5799998864 8999999999999876
No 137
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=100.00 E-value=6.7e-32 Score=273.28 Aligned_cols=355 Identities=14% Similarity=0.039 Sum_probs=246.4
Q ss_pred cCCCeEEccCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||+.|. ..+.. ++.+++++.+++.+....|....+..++++++++++.+..+ .+.++|++|+|++++++
T Consensus 48 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~ggseA~~ 125 (459)
T 4a6r_A 48 EGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTP--AGFDRVFYTNSGSESVD 125 (459)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSC--TTCCEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCchHHHHH
Confidence 466789999883 44443 78999999999987555565556677889999999988765 46679999999999999
Q ss_pred HHHHHhcC--------CCCeEEEcCCCCCChHHHHHHcCC-------------EEEEecCcC--C-CCCccC--------
Q 012124 169 QAVLAVCS--------PGDEVIIPAPFWVSYPEMARIADA-------------TPVILPTRI--S-ENFLLD-------- 216 (470)
Q Consensus 169 ~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~--~-~~~~~d-------- 216 (470)
.+++.+.+ +++.|++.+|+|+++.......+. .+..++... . +.+ +|
T Consensus 126 ~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~ 204 (459)
T 4a6r_A 126 TMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVA 204 (459)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHH
Confidence 99999875 579999999999998765554422 223333211 0 111 34
Q ss_pred HHhHhhhcc----CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCC
Q 012124 217 PKVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 291 (470)
Q Consensus 217 ~~~l~~~l~----~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~ 291 (470)
++.|++.++ +++++|++..++|++|. .++.+++++|.++|++| |+++|+||+|.+|.+.+... ......- ..
T Consensus 205 ~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~gr~G~~~-~~~~~~~-~p 281 (459)
T 4a6r_A 205 ARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKY-DVLLVADEVICGFGRTGEWF-GHQHFGF-QP 281 (459)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSS-HHHHHTC-CC
T ss_pred HHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcccccc-hHhhcCC-CC
Confidence 788888885 34455555444666666 55999999999999999 99999999999875554311 1111111 11
Q ss_pred ceEEEeccCcccccccceeeEEEcCHHHHHHHH---HHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHH-HHHHHHH
Q 012124 292 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN---KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV-KAFRERR 367 (470)
Q Consensus 292 ~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~---~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~-~~~~~~~ 367 (470)
. +.+|||.++.+|+|+||+++++++++.+. ......+++.++++|.++.++|+.... ++++++.+ +.....+
T Consensus 282 d---i~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~~~ 357 (459)
T 4a6r_A 282 D---LFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRD-EGIVQRVKDDIGPYMQ 357 (459)
T ss_dssp S---EEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHH-TCHHHHHHHTHHHHHH
T ss_pred C---eeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHH
Confidence 1 44789999733399999999999999887 334445678899999999999874221 34455555 5555556
Q ss_pred HHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCC-CCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--
Q 012124 368 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK-IENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA-- 444 (470)
Q Consensus 368 ~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~-- 444 (470)
+.+.+.|.+++.+....+.+. ++++++....... ..... .....++++.|+++ ||.+.|+. +++||++.
T Consensus 358 ~~l~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~-Gv~v~~~g-----~~iRi~~~~~ 429 (459)
T 4a6r_A 358 KRWRETFSRFEHVDDVRGVGM-VQAFTLVKNKAKR-ELFPDFGEIGTLCRDIFFRN-NLIMRACG-----DHIVSAPPLV 429 (459)
T ss_dssp HHHHHHHTTCTTEEEEEEETT-EEEEEECSBTTTT-BCCSSTTHHHHHHHHHHHHT-TEECEEET-----TEEEECCCTT
T ss_pred HHHHHHHhcCCCeEEEEEEEE-EEEEEEecCcccc-ccccchHHHHHHHHHHHHHC-CeEEecCC-----CEEEEECCCC
Confidence 666566666655655554444 4666765321000 00000 00156788888776 99999963 79999955
Q ss_pred cCHHHHHHHHHHHHHHHHhh
Q 012124 445 ASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 445 ~~~~~i~~~l~~l~~~l~~~ 464 (470)
.+++++++++++|+++++++
T Consensus 430 ~t~e~i~~~l~~l~~~l~~~ 449 (459)
T 4a6r_A 430 MTRAEVDEMLAVAERCLEEF 449 (459)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 49999999999999998765
No 138
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=100.00 E-value=6.6e-32 Score=268.38 Aligned_cols=319 Identities=15% Similarity=0.195 Sum_probs=220.8
Q ss_pred EccCCCCCCCChHHHHHHHHHHHH---c--CCCCCC--CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHH
Q 012124 98 RLAAGEPDFDTPVLIAEAGINAIR---E--GFTRYT--PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 170 (470)
Q Consensus 98 ~l~~g~~~~~~~~~~~~a~~~~~~---~--~~~~y~--~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~ 170 (470)
.++.+.|++..++.+.+++.+++. . ....|+ +.....++++.++++ +|. + +.++++++++++..+
T Consensus 24 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~----~g~--~--~~i~~~sG~~a~~~~ 95 (398)
T 2rfv_A 24 TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVL----ERG--E--AGLATASGISAITTT 95 (398)
T ss_dssp TCCSSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHH----HTC--S--EEEEESSHHHHHHHH
T ss_pred CCCcCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHH----hCC--C--cEEEECCHHHHHHHH
Confidence 578899998876555444444443 2 223332 233445555555555 453 2 555555666999999
Q ss_pred HHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCH
Q 012124 171 VLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246 (470)
Q Consensus 171 ~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~ 246 (470)
+++++++||+|++++|+|+++...+ +..|.+++.++.+ |++.+++++++++++|++++|+||||.+++
T Consensus 96 l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~- 167 (398)
T 2rfv_A 96 LLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-------KPEEIRAAMRPETKVVYIETPANPTLSLVD- 167 (398)
T ss_dssp HHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-------SHHHHHHHCCTTEEEEEEESSBTTTTBCCC-
T ss_pred HHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-------CHHHHHHhcCCCCeEEEEECCCCCCCcccC-
Confidence 9999999999999999999988776 7889999999863 899999999989999999999999999998
Q ss_pred HHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccccee-eEEEcCHHHHH-HHH
Q 012124 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVA-ACN 324 (470)
Q Consensus 247 ~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~-G~~~~~~~~~~-~l~ 324 (470)
+++|+++|++| |+++|+|++|..+.+.. ++ . .+.++++.|+||.++.+|+|+ ||+++++++++ .+.
T Consensus 168 --l~~i~~l~~~~-~~~li~De~~~~~~~~~----~~-~----~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~ 235 (398)
T 2rfv_A 168 --IETVAGIAHQQ-GALLVVDNTFMSPYCQQ----PL-Q----LGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARF 235 (398)
T ss_dssp --HHHHHHHHHHT-TCEEEEECTTTCTTTCC----GG-G----GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHH
T ss_pred --HHHHHHHHHHc-CCEEEEECCCcccccCC----ch-h----hCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHH
Confidence 89999999999 99999999999765531 11 1 246799999999998799998 99999999887 666
Q ss_pred HHhhhc-cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH----------HhccCCCCeecCC----CceE
Q 012124 325 KIQSQF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK----------SFGELEGVKMSEP----QGAF 389 (470)
Q Consensus 325 ~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~----------~L~~~~g~~~~~~----~~g~ 389 (470)
...... +.+.+++.|.++...++. ...++++..+..+...+++.+ .|.++|++.+..+ .+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~ 312 (398)
T 2rfv_A 236 VGLKDITGGCMSPFNAWLTLRGVKT---LGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGI 312 (398)
T ss_dssp THHHHTTCCCCCHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSE
T ss_pred HHHHhCCCCCCCHHHHHHHHhhhhh---HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceE
Confidence 555555 567889999998888875 244444433333333333322 1222344444433 3555
Q ss_pred EEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-----------------------CCCcEEEEeec-
Q 012124 390 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-----------------------DDTCIRISYAA- 445 (470)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~-----------------------~~~~iRls~~~- 445 (470)
+++++++.. .+...+.+.+. ..||.+.+|..|. .++++|||++.
T Consensus 313 -~~~~~~~~~----------~~~~~l~~~~~-~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~ 380 (398)
T 2rfv_A 313 -ISFEIAGGL----------EAGRRMINSVE-LCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLE 380 (398)
T ss_dssp -EEEEETTHH----------HHHHHHHTTCS-SSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSS
T ss_pred -EEEEEcCCH----------HHHHHHHHhCC-cceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCC
Confidence 555886310 02233333332 2378888886542 15799999997
Q ss_pred -CHHHHHHHHHHHHH
Q 012124 446 -SLTTLQAAVERIKK 459 (470)
Q Consensus 446 -~~~~i~~~l~~l~~ 459 (470)
++++++.+++.|++
T Consensus 381 ~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 381 DPEDIINDLEHAIRK 395 (398)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 55666665555543
No 139
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=100.00 E-value=2.1e-31 Score=267.49 Aligned_cols=341 Identities=11% Similarity=0.040 Sum_probs=237.7
Q ss_pred cCCCeEEccCCCC--CCC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|++.+.+ ++. .++.+.+++.+++.+... +....+..+.+..+++.+.+..+ +++++|++|+|++++++
T Consensus 41 ~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~ggtea~~ 117 (429)
T 1s0a_A 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSH-VMFGGITHAPAIELCRKLVAMTP--QPLECVFLADSGSVAVE 117 (429)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSC-CCCSSEECHHHHHHHHHHHHHSC--TTCCEEEEESSHHHHHH
T ss_pred CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccc-ccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHHH
Confidence 4556899998874 343 478999999999876322 21111122445555555555555 46789999999999999
Q ss_pred HHHHHhc---C----CCCeEEEcCCCCCChHHHHHH-c---------------CCEEEEecCcC-CCCC-ccCHHhHhhh
Q 012124 169 QAVLAVC---S----PGDEVIIPAPFWVSYPEMARI-A---------------DATPVILPTRI-SENF-LLDPKVLESK 223 (470)
Q Consensus 169 ~~~~~l~---~----~gd~Vlv~~p~y~~~~~~~~~-~---------------g~~~~~v~~~~-~~~~-~~d~~~l~~~ 223 (470)
.+++.+. + |||+|++.+|+|+++...... . +...++++... ++.+ .+|++.|+++
T Consensus 118 ~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 197 (429)
T 1s0a_A 118 VAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARL 197 (429)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHH
T ss_pred HHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHH
Confidence 9988653 2 699999999999987653322 1 23444333211 1123 4799999999
Q ss_pred cc---CCceEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEec
Q 012124 224 LT---EKSRLLILCSP-SNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 298 (470)
Q Consensus 224 l~---~~~~~i~l~~p-~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S 298 (470)
++ +++++|+++.. |||||. ..+.+++++|.++|++| |+++|+||+|.+|.+.+.. ..+....- ... +.|
T Consensus 198 l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~-~~~li~De~~~~~g~~g~~-~~~~~~~~-~~d---~~t 271 (429)
T 1s0a_A 198 MAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDRE-GILLIADEIATGFGRTGKL-FACEHAEI-APD---ILC 271 (429)
T ss_dssp HHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGGTC-CCS---EEE
T ss_pred HHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeehhhCCcccchH-HHhhhcCC-CCC---EEE
Confidence 86 45555555444 799995 66788999999999999 9999999999986543321 11111111 122 347
Q ss_pred cCccccccc-ceeeEEEcCHHHHHHHHHHh-----hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q 012124 299 FSKAFAMTG-WRLGYIAGPKHFVAACNKIQ-----SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 372 (470)
Q Consensus 299 ~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~-----~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 372 (470)
|||.++ +| +|+||+++++++++.+.... ...+++.+++.|.++.++++.. .+ ....++++++++++.+
T Consensus 272 ~sK~l~-~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~---~~--~~~~~~~~~~~~~l~~ 345 (429)
T 1s0a_A 272 LGKALT-GGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAIL---ES--GDWQQQVADIEVQLRE 345 (429)
T ss_dssp ECGGGG-TSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHH---HT--CHHHHHHHHHHHHHHH
T ss_pred eccccc-CCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHH
Confidence 999998 78 99999999999988876531 2245677999999988888641 11 2345666777888888
Q ss_pred HhccC---CCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCH
Q 012124 373 SFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASL 447 (470)
Q Consensus 373 ~L~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~ 447 (470)
.|+++ +++....+. |.++|+++++.. +..++.+.|+++ ||.+.|+ .+++|++++ .++
T Consensus 346 ~L~~l~~~~~~~~~~~~-g~~~~~~~~~~~-----------~~~~l~~~l~~~-Gi~v~~~-----~~~iRis~~~~~t~ 407 (429)
T 1s0a_A 346 QLAPARDAEMVADVRVL-GAIGVVETTHPV-----------NMAALQKFFVEQ-GVWIRPF-----GKLIYLMPPYIILP 407 (429)
T ss_dssp HHGGGGGCTTEEEEEEE-TTEEEEEESSCB-----------CHHHHHHHHHHT-TEECCCB-----TTEEEECCCTTCCH
T ss_pred HHHHHhcCCCEEEEEEe-eEEEEEEECCcc-----------cHHHHHHHHHHC-CCEEecc-----CCEEEEECCCCCCH
Confidence 88764 455444444 456888887532 677888888765 9999883 378999966 499
Q ss_pred HHHHHHHHHHHHHHHhhC
Q 012124 448 TTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 448 ~~i~~~l~~l~~~l~~~~ 465 (470)
+++++++++|++++++++
T Consensus 408 e~i~~~~~~l~~~~~~~~ 425 (429)
T 1s0a_A 408 QQLQRLTAAVNRAVQDET 425 (429)
T ss_dssp HHHHHHHHHHHHHTSSGG
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999999999887654
No 140
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=100.00 E-value=6.1e-33 Score=271.87 Aligned_cols=326 Identities=12% Similarity=0.073 Sum_probs=238.2
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcC----CCCCCC---CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecCh-HHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREG----FTRYTP---NAGTLELRSAICHKLKEENGLSYTPDQILVSNGA-KQS 166 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~----~~~y~~---~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~-~~a 166 (470)
.+++++.|.+ ++|+.+++++.+.+... ...|.. ..+..++.+.+.+++.+.+|.+ ++++|++|+|+ +++
T Consensus 3 ~~~~~~~g~~--~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~~v~~~~g~gt~a 79 (360)
T 1w23_A 3 QVFNFNAGPS--ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIP-NDYQILFLQGGASLQ 79 (360)
T ss_dssp CCEECCSSSC--CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHH
T ss_pred ceEeecCCCc--CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCceEEEECCcchHH
Confidence 3577877755 56888999998877531 111211 3455556677777777777864 46799999999 999
Q ss_pred HHHHHHHhcCC---CCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhh-hccCCceEEEEcCCCCCccc
Q 012124 167 ILQAVLAVCSP---GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLES-KLTEKSRLLILCSPSNPTGS 242 (470)
Q Consensus 167 l~~~~~~l~~~---gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~-~l~~~~~~i~l~~p~nPtG~ 242 (470)
+.+++..++.+ ||.|+++.++|.. ...++..| +++.+++++++++ +|++++++ ++++++++|++++|+||||.
T Consensus 80 l~~~~~~l~~~~~~g~~vi~~~~~~~~-~~~~~~~g-~~~~v~~~~~~~~-~d~~~l~~~~i~~~~k~v~~~~~~nptG~ 156 (360)
T 1w23_A 80 FTMLPMNLLTKGTIGNYVLTGSWSEKA-LKEAKLLG-ETHIAASTKANSY-QSIPDFSEFQLNENDAYLHITSNNTIYGT 156 (360)
T ss_dssp HHHHHHHHCCTTCEEEEEECSHHHHHH-HHHHHTTS-EEEEEEECGGGTS-CSCCCGGGCCCCTTEEEEEEESEETTTTE
T ss_pred HHHHHHHhcCCCCcccEEEecchhHHH-HHHHHHhC-CeEEeecccccCc-CCccchHhhccCCCCCEEEEeCCCCCcce
Confidence 99999998865 5677777776654 33467789 9999998753333 79999999 88889999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHH
Q 012124 243 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 322 (470)
Q Consensus 243 ~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~ 322 (470)
+++ ++ . ++| |++||+|++|+.+.. ..++..+ .++++|+||.+|++| +||+++++++++.
T Consensus 157 ~~~--~i---~---~~~-~~~li~D~a~~~~~~----~~~~~~~------di~~~s~sK~~~~~G--~G~~~~~~~~~~~ 215 (360)
T 1w23_A 157 QYQ--NF---P---EIN-HAPLIADMSSDILSR----PLKVNQF------GMIYAGAQKNLGPSG--VTVVIVKKDLLNT 215 (360)
T ss_dssp ECS--SC---C---CCC-SSCEEEECTTTTTSS----CCCGGGC------SEEEEETTTTTSCTT--CEEEEEEHHHHCS
T ss_pred ecc--cc---c---ccC-CceEEEechhhcCCC----CcCcccC------CEEEEEcccccCCCC--cEEEEEcHHHHhh
Confidence 987 22 2 378 999999999987432 1122222 388999999998556 8999999988765
Q ss_pred HHHHh------------hhccCCCChHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCC-eec-CC--
Q 012124 323 CNKIQ------------SQFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGV-KMS-EP-- 385 (470)
Q Consensus 323 l~~~~------------~~~~~~~~~~~q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~-~~-- 385 (470)
+.... .....+++...+.++..+++.. .+. ++++++++++++++++.+.|++++++ ... .+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 293 (360)
T 1w23_A 216 KVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWI--KDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGS 293 (360)
T ss_dssp CCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGG
T ss_pred cccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchh
Confidence 54321 0112345666666666666531 012 67889999999999999999988655 543 23
Q ss_pred CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012124 386 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 386 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~ 463 (470)
.+++++|+++++.. +..++.++|.+ .||.+.||..+ ++++|++++. +++++++++++|++++++
T Consensus 294 ~~~~~~~~~~~~~~-----------~~~~~~~~l~~-~gi~~~~~~~~--~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 294 RSLMNVTFNLRNEE-----------LNQQFLAKAKE-QGFVGLNGHRS--VGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp BCSSEEEEECSSHH-----------HHHHHHHHHHH-TTEESCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ccCcEEEEEcCCCc-----------cHHHHHHHHHH-CCeeeecCCCC--CCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 34667899987531 45678887765 49999998754 6899999995 889999999999998865
No 141
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=100.00 E-value=1.7e-31 Score=265.54 Aligned_cols=326 Identities=15% Similarity=0.190 Sum_probs=247.5
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
++++||+.|.|++ ++.+++++.+.+... .|.+..+..++++++++++ |. +++++++|+++++..++.+
T Consensus 30 ~~~id~~~~~~~~--~~~v~~a~~~~~~~~--~y~~~~~~~~l~~~la~~~----~~----~~~v~~~~Gt~a~~~~l~~ 97 (399)
T 2oga_A 30 VPFLDLKAAYEEL--RAETDAAIARVLDSG--RYLLGPELEGFEAEFAAYC----ET----DHAVGVNSGMDALQLALRG 97 (399)
T ss_dssp BCSCCHHHHHHHT--HHHHHHHHHHHHHHT--CCSSSHHHHHHHHHHHHHT----TS----SEEEEESCHHHHHHHHHHH
T ss_pred CcccccCcCCCCC--CHHHHHHHHHHHhcC--CCCCchhHHHHHHHHHHHH----CC----CeEEEecCHHHHHHHHHHH
Confidence 3678999988875 388889998888653 5766778899999999986 32 2677788889999999999
Q ss_pred h-cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHH
Q 012124 174 V-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 252 (470)
Q Consensus 174 l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l 252 (470)
+ +++||+|++++|+|+++...++..|++++.++++++ ++.+|++.|++++++++++|+ ++||||...+ +++|
T Consensus 98 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~---l~~i 170 (399)
T 2oga_A 98 LGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHED-HPTLDPLLVEKAITPRTRALL---PVHLYGHPAD---MDAL 170 (399)
T ss_dssp TTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCSS-SSSBCHHHHHHHCCTTEEEEC---CBCGGGCCCC---HHHH
T ss_pred hCCCCcCEEEECCCccHHHHHHHHHCCCEEEEEecCCC-CCCcCHHHHHHhcCCCCeEEE---EeCCcCCccC---HHHH
Confidence 9 899999999999999999999999999999998743 467999999999988888776 5789999988 8899
Q ss_pred HHHHHhCCCEEEEEeccccccc-cCCCCcccccccCCCCCceEEEecc--CcccccccceeeEEEcC-HHHHHHHHHHhh
Q 012124 253 ARIVAKHPRLLVLSDEIYEHII-YAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAGP-KHFVAACNKIQS 328 (470)
Q Consensus 253 ~~~~~~~~~~~iI~Dd~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~S~--sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~ 328 (470)
.++|+++ |++||+|++|+.+. +++. .+..+ ..+++.|| ||.++.+| |+||++++ +++++.+.....
T Consensus 171 ~~l~~~~-~~~li~Dea~~~g~~~~~~---~~~~~-----~di~~~S~~~sK~~~~~G-~~g~~~~~~~~~~~~l~~~~~ 240 (399)
T 2oga_A 171 RELADRH-GLHIVEDAAQAHGARYRGR---RIGAG-----SSVAAFSFYPGKNLGCFG-DGGAVVTGDPELAERLRMLRN 240 (399)
T ss_dssp HHHHHHH-TCEECEECTTCTTCEETTE---ETTCT-----TCEEEEECCTTSSSCCSS-CCEEEEESCHHHHHHHHHHHB
T ss_pred HHHHHHc-CCEEEEECcccccCccCCe---ecccc-----cCEEEEeCCCCccCCcCC-ceEEEEeCCHHHHHHHHHHHh
Confidence 9999999 99999999998653 3221 11111 24888898 79998668 99999986 888888876654
Q ss_pred hc------------cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec-CCCceEEEeeec
Q 012124 329 QF------------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDF 395 (470)
Q Consensus 329 ~~------------~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~g~~~~~~~ 395 (470)
.. .+..+.+.+.++...++. +++..+..++.++.+.+.|++++|+.+. .+..+.++|+.+
T Consensus 241 ~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~-------~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~ 313 (399)
T 2oga_A 241 YGSRQKYSHETKGTNSRLDEMQAAVLRIRLAH-------LDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLF 313 (399)
T ss_dssp TTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSE
T ss_pred cCccccccccccccCCCcCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEE
Confidence 31 124566766666666653 2334455566678888999888887764 344566566444
Q ss_pred cCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC-----------CC------------CCcEEEEeec--CHHHH
Q 012124 396 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF-----------GD------------DTCIRISYAA--SLTTL 450 (470)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f-----------~~------------~~~iRls~~~--~~~~i 450 (470)
+-.. .+..++.+.|.++ ||.+.++... +. .+++||++.. +++++
T Consensus 314 ~~~~----------~~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi 382 (399)
T 2oga_A 314 TVRT----------ERRDELRSHLDAR-GIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQA 382 (399)
T ss_dssp EEEC----------SSHHHHHHHHHHT-TBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHH
T ss_pred EEEC----------CCHHHHHHHHHHC-CCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHH
Confidence 3210 1677888888765 9999875421 00 1579999885 89999
Q ss_pred HHHHHHHHHHHHhhCC
Q 012124 451 QAAVERIKKGLLTLRP 466 (470)
Q Consensus 451 ~~~l~~l~~~l~~~~~ 466 (470)
+++++.|++++++++.
T Consensus 383 ~~~~~~l~~~~~~l~~ 398 (399)
T 2oga_A 383 LRVIDAVREWAERVDQ 398 (399)
T ss_dssp HHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999987654
No 142
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=100.00 E-value=5.4e-32 Score=271.98 Aligned_cols=333 Identities=14% Similarity=0.096 Sum_probs=230.7
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCc---------CcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNA---------GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~---------g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
+.+.|..+.+. ++|+.+++++.+.+.. ...|+... ...++|+++++++ | +++++|++|+|+++
T Consensus 18 ~~~~Ld~~~~~-~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~ 89 (432)
T 3a9z_A 18 RKVYMDYNATT-PLEPEVIQAVTEAMKE-AWGNPSSSYVAGRKAKDIINTARASLAKMI----G--GKPQDIIFTSGGTE 89 (432)
T ss_dssp CCEECBTTTCC-CCCHHHHHHHHHHHHH-CCSCTTCSSHHHHHHHHHHHHHHHHHHHHH----T--CCGGGEEEESCHHH
T ss_pred CcEEeeCCccC-CCCHHHHHHHHHHHHH-hcCCCccCcHHHHHHHHHHHHHHHHHHHHc----C--CCcCeEEEeCChHH
Confidence 56888888876 5688899999998865 33342211 1247777777775 4 46789999999999
Q ss_pred HHHHHHHHhc--------CCCCeEEEcCCCCCCh-----------------HHHHHHcCCEEEEecCcCCCCCccCHHhH
Q 012124 166 SILQAVLAVC--------SPGDEVIIPAPFWVSY-----------------PEMARIADATPVILPTRISENFLLDPKVL 220 (470)
Q Consensus 166 al~~~~~~l~--------~~gd~Vlv~~p~y~~~-----------------~~~~~~~g~~~~~v~~~~~~~~~~d~~~l 220 (470)
++.+++.++. ++||+|++++|+|+.+ ....+..|++++.+|++.+ ++.+|++.|
T Consensus 90 a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~l 168 (432)
T 3a9z_A 90 SNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKV-NGQVEVEDI 168 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTT-TSSCCHHHH
T ss_pred HHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcc-cCCcCHHHH
Confidence 9999999886 5899999999999876 3344557999999998742 346899999
Q ss_pred hhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC----------EEEEEeccccccccCCCCcccccccCCCC
Q 012124 221 ESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR----------LLVLSDEIYEHIIYAPATHTSFASLPGMW 290 (470)
Q Consensus 221 ~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~----------~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~ 290 (470)
++++++++++|++++|+||||.+++ +++|.++|+++ + ++||+|++|+... ....+..+.
T Consensus 169 ~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~-~~~~~~~~~~~~~livDea~~~~~----~~~~~~~~~--- 237 (432)
T 3a9z_A 169 LAAVRPTTCLVTIMLANNETGVIMP---ISEISRRIKAL-NQIRAASGLPRVLVHTDAAQALGK----RRVDVEDLG--- 237 (432)
T ss_dssp HHTCCTTEEEEECCSBCTTTCBBCC---HHHHHHHHHHH-HHHHHHHTCCCCEEEEECTTTTTT----SCCCHHHHC---
T ss_pred HHhccCCceEEEEECcccCcccccC---HHHHHHHHHhc-CcccccccCCceEEEEEchhhhCC----cccChhhcC---
Confidence 9999989999999999999999999 66788999999 8 9999999997632 122222222
Q ss_pred CceEEEeccCcccccccceeeEEEcCHHH-HHHHHHH-------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012124 291 ERTLTVNGFSKAFAMTGWRLGYIAGPKHF-VAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 362 (470)
Q Consensus 291 ~~~i~i~S~sK~~~~~G~r~G~~~~~~~~-~~~l~~~-------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 362 (470)
..+++.|+||.+| .|+||++++++. ...+... .....++.+...+.++.++++. ..+++++++++
T Consensus 238 -~d~~~~s~~K~~g---~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~---~~~~~~~~~~~ 310 (432)
T 3a9z_A 238 -VDFLTIVGHKFYG---PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADL---VSENCETYEAH 310 (432)
T ss_dssp -CSEEEEEGGGTTC---CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred -CCEEEEehhHhcC---CcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHH---HHhhHHHHHHH
Confidence 2367899999875 469999998765 2222211 1222345677788777777764 24578889999
Q ss_pred HHHHHHHHHHHhccCCCCeec--CC-----CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--
Q 012124 363 FRERRDFLVKSFGELEGVKMS--EP-----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF-- 433 (470)
Q Consensus 363 ~~~~~~~l~~~L~~~~g~~~~--~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f-- 433 (470)
++++++++.+.|++++|+.+. .+ ..+..+++.+++.- .+..++.+.+ + +|.+.+|..+
T Consensus 311 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l--~-~i~~~~G~~~~~ 377 (432)
T 3a9z_A 311 MRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQ----------LRGYMVLAQC--Q-TLLASVGASCHS 377 (432)
T ss_dssp HHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTT----------CCHHHHHHHC--S-SEECBSSCGGGG
T ss_pred HHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCC----------CcHHHHHHHh--c-CeEEeccccccC
Confidence 999999999999886565432 32 12323555565410 0455665544 2 7887777544
Q ss_pred -------------CC-----CCcEEEEeec--CHHHHHHHHHHHHHHHHhhCCC
Q 012124 434 -------------GD-----DTCIRISYAA--SLTTLQAAVERIKKGLLTLRPG 467 (470)
Q Consensus 434 -------------~~-----~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~~~ 467 (470)
+. .+++|++++. +++++++++++|++++++++.+
T Consensus 378 ~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~~~ 431 (432)
T 3a9z_A 378 DHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLEGP 431 (432)
T ss_dssp GGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 21 2789999997 8999999999999999887654
No 143
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=100.00 E-value=2.1e-31 Score=269.31 Aligned_cols=354 Identities=13% Similarity=0.083 Sum_probs=244.3
Q ss_pred cCCCeEEccCCC--CCCC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||+.|. ..+. .++.+.+++.+++.+..+ ....+..+++.++++++.+..+. ..+ |++|+|++++++
T Consensus 47 ~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~--~~~~~~~~~~~~la~~l~~~~~~--~~~-v~~~~ggseA~~ 121 (452)
T 3n5m_A 47 QGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSY--FPMSQSHEPAIKLAEKLNEWLGG--EYV-IFFSNSGSEANE 121 (452)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCC--CCTTSEEHHHHHHHHHHHHHHTS--CEE-EEEESSHHHHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCC--cccccCCHHHHHHHHHHHHhCCC--Cce-EEEeCchHHHHH
Confidence 466789999883 2333 378999999999876433 23456678888888888877664 334 999999999999
Q ss_pred HHHHHhc-----C---CCCeEEEcCCCCCChHHHHHHcCCE-------------EEEecCcCCCCCcc-C---------H
Q 012124 169 QAVLAVC-----S---PGDEVIIPAPFWVSYPEMARIADAT-------------PVILPTRISENFLL-D---------P 217 (470)
Q Consensus 169 ~~~~~l~-----~---~gd~Vlv~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~-d---------~ 217 (470)
.+++.+. . ++|.|++.+|+|+++.......+.. +..++....-.+.. | +
T Consensus 122 ~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (452)
T 3n5m_A 122 TAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECV 201 (452)
T ss_dssp HHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHH
Confidence 9999887 5 7899999999999987665554332 33333211000000 1 8
Q ss_pred HhHhhhcc----CCceEEEEcCC-CCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCC
Q 012124 218 KVLESKLT----EKSRLLILCSP-SNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 291 (470)
Q Consensus 218 ~~l~~~l~----~~~~~i~l~~p-~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~ 291 (470)
+.|+++++ +++++|+++.+ || ||..+ +.+++++|.++|++| |+++|+||+|.+|.+.+.. ...... +
T Consensus 202 ~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~g~~g~~-~~~~~~----~ 274 (452)
T 3n5m_A 202 KEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKH-GALLISDEVICGFGRTGKA-FGFMNY----D 274 (452)
T ss_dssp HHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGT----T
T ss_pred HHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHc-CCEEEEecchhCCCccccc-chhhhc----C
Confidence 89999886 56777778777 89 99766 888899999999999 9999999999987554431 111111 1
Q ss_pred ceEEEeccCccccccc-ceeeEEEcCHHHHHHHHH------HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 012124 292 RTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 364 (470)
Q Consensus 292 ~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~ 364 (470)
....+.||||.++ .| +|+||+++++++++.+.. .....+++.+++++.++.++|+.... ++.+++.++..+
T Consensus 275 ~~~di~t~sK~l~-~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~ 352 (452)
T 3n5m_A 275 VKPDIITMAKGIT-SAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIEN-ENLIERSAQMGS 352 (452)
T ss_dssp CCCSEEEECGGGG-TTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHH
T ss_pred CCCCEEeeccccc-CCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence 1122457999998 69 999999999999887743 11335677899999999998874211 344555555555
Q ss_pred HHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEE
Q 012124 365 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRIS 442 (470)
Q Consensus 365 ~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls 442 (470)
..++.+.+.+.+++.+....+.+. ++++.+.+..... ... ......++++.|+++ ||.+.|+..|.. ++++||+
T Consensus 353 ~l~~~L~~~~~~~~~~~~~~~~g~-~~~i~~~~~~~~~-~~~-~~~~~~~~~~~l~~~-Gv~~~~~~~~~~~~~~~iRi~ 428 (452)
T 3n5m_A 353 LLLEQLKEEIGEHPLVGDIRGKGL-LVGIELVNDKETK-EPI-DNDKIASVVNACKEK-GLIIGRNGMTTAGYNNILTLA 428 (452)
T ss_dssp HHHHHHHHHHTTCTTEEEEEESSS-CEEEEEEEETTTT-EEC-CHHHHHHHHHHHHHT-TEECEECTTSSTTCCCEEEEC
T ss_pred HHHHHHHHHHhcCCCeEEEEEEEE-EEEEEEecCCccc-CCC-CHHHHHHHHHHHHHC-CcEEeecCcccCCCCCEEEEE
Confidence 556666665566655555444444 4666664321000 000 000124677777765 999999886642 5799998
Q ss_pred eec--CHHHHHHHHHHHHHHHHh
Q 012124 443 YAA--SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 443 ~~~--~~~~i~~~l~~l~~~l~~ 463 (470)
++. +++++++++++|++++++
T Consensus 429 ~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 429 PPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHh
Confidence 554 999999999999999865
No 144
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=100.00 E-value=6.3e-32 Score=274.26 Aligned_cols=371 Identities=16% Similarity=0.163 Sum_probs=250.4
Q ss_pred cccccCCchHHHHHHHHHHHHhcCCCeEEccCCCC------CCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHH
Q 012124 70 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP------DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHK 143 (470)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~------~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~ 143 (470)
++..+.++.......+...+...|.++++++.|.+ +..+ +.+.+++.+.+..+...|++..+..+|+++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~ylD~~~~~~~-~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~ 88 (467)
T 1ax4_A 10 RIKMVEKIRVPSREEREAALKEAGYNPFLLPSSAVYIDLLTDSGT-NAMSDHQWAAMITGDEAYAGSRNYYDLKDKAKEL 88 (467)
T ss_dssp EEEEEEECCCCCHHHHHHHHHHTTSCGGGSCGGGCSEECSCSSSC-CCEEHHHHHHHHTCCCCSSSCHHHHHHHHHHHHH
T ss_pred hhceeecccccchhHHHHHHHhcCcCcccCCCCceeeecccCcCC-HHHHHHHHHHHhhcccccccCccHHHHHHHHHHH
Confidence 34444444444444445555555655566665553 2222 5566667777666666788888999999999998
Q ss_pred HHHHcCCCCCCCcEEEecChHHHHHHHHHHhcC----CCCe---EEEcCCCCCChHHHHHHcCCEEEEecCcC----C--
Q 012124 144 LKEENGLSYTPDQILVSNGAKQSILQAVLAVCS----PGDE---VIIPAPFWVSYPEMARIADATPVILPTRI----S-- 210 (470)
Q Consensus 144 l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~----~gd~---Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~----~-- 210 (470)
+. .++|++|+|+++++.++++++++ +||+ |+++.+.|..+...+...|++++.++... +
T Consensus 89 ~~--------~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 160 (467)
T 1ax4_A 89 FN--------YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETY 160 (467)
T ss_dssp HC--------CCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSC
T ss_pred cC--------CCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHHhccCCceeccccccccccccc
Confidence 73 26999999999999999999988 9998 99987666777778888999998876532 1
Q ss_pred --CCCccCHHhHhhhccC----CceEEEEcCCCCCc-ccCCCHHHHHHHHHHHHhCCCEEEEEeccccc--c--------
Q 012124 211 --ENFLLDPKVLESKLTE----KSRLLILCSPSNPT-GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH--I-------- 273 (470)
Q Consensus 211 --~~~~~d~~~l~~~l~~----~~~~i~l~~p~nPt-G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~--~-------- 273 (470)
.++.+|++.|++++++ ++++|++++||||| |.+++.+++++|+++|++| |++||+|+++.. .
T Consensus 161 ~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~-gi~li~De~~~~~~~~~~~~~~~ 239 (467)
T 1ax4_A 161 DDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQH-GIFVVMDSARFCENAYFIKARDP 239 (467)
T ss_dssp CTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHH-TCCEEEECTTHHHHHHHHHHHCG
T ss_pred CCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHc-CCEEEEEchhhhhcchhcccccc
Confidence 1345899999999963 68999999999999 8999999999999999999 999999998543 1
Q ss_pred ccCCCCcccccccCCC--CCceEEEeccCcccccc-cceeeEEEcC-H-HHHHHHHHHhhhc----cCC-CChHHHHHHH
Q 012124 274 IYAPATHTSFASLPGM--WERTLTVNGFSKAFAMT-GWRLGYIAGP-K-HFVAACNKIQSQF----TSG-ASSISQKAGV 343 (470)
Q Consensus 274 ~~~~~~~~~~~~~~~~--~~~~i~i~S~sK~~~~~-G~r~G~~~~~-~-~~~~~l~~~~~~~----~~~-~~~~~q~a~~ 343 (470)
.+.+. ++..+.+. ....+++.|+||.++++ | ||++++ + ++++.+....... ..+ .+...+.++.
T Consensus 240 ~~~~~---~~~~~~~~~~~~~d~~~~s~sK~~g~~~G---g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 313 (467)
T 1ax4_A 240 KYKNA---TIKEVIFDMYKYADALTMSAKKDPLLNIG---GLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMV 313 (467)
T ss_dssp GGTTC---CHHHHHHHHGGGCSEEEEETTSTTCCSSC---EEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHH
T ss_pred ccCCC---chhhhhhhhccccceEEEeccccCCCCcc---eEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHH
Confidence 12221 12111100 00115668999999855 3 677777 6 7888776554321 122 2333333333
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcC
Q 012124 344 AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 423 (470)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 423 (470)
..++.... ++.+++ ..++++.+.+.|++ +|+.+..|.+++++|+++...... .. ....+..++++.|+++.
T Consensus 314 ~~l~~~~~-~~~~~~----~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~~L~~~~ 384 (467)
T 1ax4_A 314 QGLEEGTE-EEYLHY----RIGQVKYLGDRLRE-AGIPIQYPTGGHAVFVDCKKLVPQ-IP--GDQFPAQAVINALYLES 384 (467)
T ss_dssp HHHHHTTC-HHHHHH----HHHHHHHHHHHHHH-TTCCBCSSCCSSEEEEESTTTCTT-SC--GGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhh-hhHHHH----HHHHHHHHHHHHHh-CCCCcccCCCceEEEEehhhhccc-cc--cCCCCHHHHHHHHHHhc
Confidence 34543211 123322 23566778888877 478877788899999983211000 00 00014678888884556
Q ss_pred CEEEEC-CCCC-------C-----CCCcEEEEee---cCHHHHHHHHHHHHHHHHhhC
Q 012124 424 QVALVP-GDAF-------G-----DDTCIRISYA---ASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 424 gI~v~p-g~~f-------~-----~~~~iRls~~---~~~~~i~~~l~~l~~~l~~~~ 465 (470)
||.+.| |..| + ..+++||++. .+++++++++++|++++++.+
T Consensus 385 gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~~ 442 (467)
T 1ax4_A 385 GVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA 442 (467)
T ss_dssp CEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred CceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhhh
Confidence 999999 5432 1 1378999998 389999999999999887653
No 145
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=5.3e-32 Score=272.20 Aligned_cols=351 Identities=14% Similarity=0.129 Sum_probs=228.2
Q ss_pred cCCCeEEccCCCC--CCC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|++.|.. .+. .++.+.+++.+++.+....+.+.....+|++.++++ .+ .+++|++|+|++++++
T Consensus 53 ~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~----~~---~~~~v~~~~sGsea~~ 125 (434)
T 3l44_A 53 DGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYGTPTALEVKFAKMLKEA----MP---ALDKVRFVNSGTEAVM 125 (434)
T ss_dssp TCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSCCSSCCHHHHHHHHHHHHH----CT---TCSEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHh----CC---CCCEEEEeCchHHHHH
Confidence 4678899998864 343 378999999998876432222544555666666655 33 5689999999999999
Q ss_pred HHHHHhcC--CCCeEEEcCCCCCChHHHHHHcCCE-EEEecCcCCCCCc------------cCHHhHhhhcc---CCceE
Q 012124 169 QAVLAVCS--PGDEVIIPAPFWVSYPEMARIADAT-PVILPTRISENFL------------LDPKVLESKLT---EKSRL 230 (470)
Q Consensus 169 ~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~-~~~v~~~~~~~~~------------~d~~~l~~~l~---~~~~~ 230 (470)
.+++.+.. +++.|++.+|+|+++...+...+.. ...+......+.. -|++.|+++++ +++++
T Consensus 126 ~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~ 205 (434)
T 3l44_A 126 TTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAA 205 (434)
T ss_dssp HHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEE
T ss_pred HHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEE
Confidence 99988754 7799999999999876544332221 1111111001000 18899999886 34555
Q ss_pred EEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc-ccccccCCCCCceEEEeccCcccccccc
Q 012124 231 LILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVNGFSKAFAMTGW 308 (470)
Q Consensus 231 i~l~~p~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~~~~~~~~~~~~i~i~S~sK~~~~~G~ 308 (470)
|+++.++|++|... +++++++|.++|++| |++||+||+|.+| ..+... .......+ .+.||||.++ +|+
T Consensus 206 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-~illI~DEv~~g~-~~g~~~~~~~~~~~~------di~t~sK~~~-~G~ 276 (434)
T 3l44_A 206 ILVEPIVGNFGIVEPKPGFLEKVNELVHEA-GALVIYDEVITAF-RFMYGGAQDLLGVTP------DLTALGKVIG-GGL 276 (434)
T ss_dssp EEECSSBCTTSCBCCCTTHHHHHHHHHHTT-TCEEEEECTTTTT-TSSSSCHHHHHTCCC------SEEEEEGGGG-TTS
T ss_pred EEEcCCCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccce-eccccHHHHHcCCCC------Ceeehhhhhc-CCc
Confidence 55555566777655 899999999999999 9999999999987 433211 11112222 1568999998 999
Q ss_pred eeeEEEcCHHHHHHHHHH---hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC
Q 012124 309 RLGYIAGPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 385 (470)
Q Consensus 309 r~G~~~~~~~~~~~l~~~---~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 385 (470)
|+||+++++++++.+... ....+++.+++.|.++.++|+.... ++.+++.++..+..++.+.+.+.+++......
T Consensus 277 ~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~- 354 (434)
T 3l44_A 277 PIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ-EGLYEKLDELGATLEKGILEQAAKHNIDITLN- 354 (434)
T ss_dssp SCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEE-
T ss_pred CeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEE-
Confidence 999999999998877652 2334677899999999988874321 34444444444444444444443343223333
Q ss_pred CceEEEeeeccCccCCcccC--CCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 386 QGAFYLFIDFSTYYGSEAEG--FGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 386 ~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
..|.++++.+.+........ ........++++.|+++ ||.+.|+. .+++|+++..+++++++++++|++++++
T Consensus 355 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~rl~~~~t~e~i~~~l~~l~~~l~~ 429 (434)
T 3l44_A 355 RLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQE-GVNLAPSK----YEAWFLTTEHTKEDIEYTIEAVGRAFAA 429 (434)
T ss_dssp EETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHT-TEECCSST----TCCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHC-CeEEeecC----CCcEEEecccCHHHHHHHHHHHHHHHHH
Confidence 33445666663210000000 00000235677887766 99999874 3578998777999999999999999987
Q ss_pred hC
Q 012124 464 LR 465 (470)
Q Consensus 464 ~~ 465 (470)
++
T Consensus 430 ~~ 431 (434)
T 3l44_A 430 LA 431 (434)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 146
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=100.00 E-value=5.5e-32 Score=272.69 Aligned_cols=325 Identities=14% Similarity=0.148 Sum_probs=237.5
Q ss_pred CeEEccCC-CCCCCChHHHHHHHHHH----HHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHH
Q 012124 95 SVIRLAAG-EPDFDTPVLIAEAGINA----IREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQ 169 (470)
Q Consensus 95 ~~i~l~~g-~~~~~~~~~~~~a~~~~----~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~ 169 (470)
++|.++.| +|+.++|+.+.++.... ...+...|+ ..|.+ +++++++++.+.+|. +++++++|+++++..
T Consensus 90 ~~i~l~~g~~~~~~~~~~i~~a~~~~~~~~~~~~~~~Y~-~~g~~-~~~~l~~~la~~~g~----~~~i~~~sGt~al~~ 163 (464)
T 1ibj_A 90 LLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYT-RSGNP-TRDALESLLAKLDKA----DRAFCFTSGMAALSA 163 (464)
T ss_dssp HHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSCCCSCSBT-TTCCH-HHHHHHHHHHHHHTC----SEEEEESSHHHHHHH
T ss_pred eEEECCCCCCCCCCCCccHHhhhhhhhhcccccCCcccc-CCCCH-HHHHHHHHHHHHhCC----CeEEEECCHHHHHHH
Confidence 35788887 78877777666665432 222456675 55666 899999999988774 377778888899998
Q ss_pred HHHHhcCCCCeEEEcCCCCCChHHH----HHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCC
Q 012124 170 AVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 245 (470)
Q Consensus 170 ~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s 245 (470)
++. ++++||+|++++|+|+++... ++..|++++.++.+ |++.|++++++++++|++++|+||||.+++
T Consensus 164 ~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-------d~~~l~~~i~~~tk~v~l~~p~NptG~v~~ 235 (464)
T 1ibj_A 164 VTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT-------KLDEVAAAIGPQTKLVWLESPTNPRQQISD 235 (464)
T ss_dssp HHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT-------SHHHHHHHCCSSEEEEEECSSCTTTCCCCC
T ss_pred HHH-HhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC-------CHHHHHHHhccCceEEEEeCCCCCCCEeec
Confidence 875 789999999999999998764 46689999999862 899999999989999999999999999998
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccc-ccceeeEEEcC-HHHHHHH
Q 012124 246 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM-TGWRLGYIAGP-KHFVAAC 323 (470)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~-~G~r~G~~~~~-~~~~~~l 323 (470)
+++|+++|++| |++||+|++|.... ...++ . .+.++++.|+||.++. .|+|+||++++ +++++.+
T Consensus 236 ---l~~i~~la~~~-gi~livDea~~~g~----~~~~~-~----~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l 302 (464)
T 1ibj_A 236 ---IRKISEMAHAQ-GALVLVDNSIMSPV----LSRPL-E----LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEV 302 (464)
T ss_dssp ---HHHHHHHHHTT-TCEEEEECTTTCTT----TCCGG-G----TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHH
T ss_pred ---HHHHHHHHHHc-CCEEEEECCCcccc----cCChh-h----cCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHH
Confidence 88999999999 99999999997521 11121 1 3578999999999863 38999999998 5888888
Q ss_pred HHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH----------HHHhccCCCCeecCCC---ceEE
Q 012124 324 NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL----------VKSFGELEGVKMSEPQ---GAFY 390 (470)
Q Consensus 324 ~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l----------~~~L~~~~g~~~~~~~---~g~~ 390 (470)
.........+.+++.|.++...++. ....+++..+......+++ .+.|+++|++++..+. .|.+
T Consensus 303 ~~~~~~~g~~~~~~~~~a~~~al~~---~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~ 379 (464)
T 1ibj_A 303 YFLQNSEGSGLAPFDCWLCLRGIKT---MALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSV 379 (464)
T ss_dssp HHHHHHTTCBCCHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSE
T ss_pred HHHHHhcCCCCCHHHHHHHHhchhh---HHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceE
Confidence 8777656667789999888888764 1222332222222222333 2344455666665553 2335
Q ss_pred EeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC------------CC----------CC-CCcEEEEeecCH
Q 012124 391 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD------------AF----------GD-DTCIRISYAASL 447 (470)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~------------~f----------~~-~~~iRls~~~~~ 447 (470)
+++++++. .....+++.|. ..||.+.+|. .+ +. ++++|++++.
T Consensus 380 ~~~~l~~~-----------~~~~~~~~~L~-~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~-- 445 (464)
T 1ibj_A 380 FSFITGSV-----------ALSKHLVETTK-YFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI-- 445 (464)
T ss_dssp EEEECSCH-----------HHHHHHHHHCS-SSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS--
T ss_pred EEEEECCH-----------HHHHHHHHhcC-cceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--
Confidence 77777431 02345766664 3588888885 12 22 4689999998
Q ss_pred HHHHHHHHHHHHHHHh
Q 012124 448 TTLQAAVERIKKGLLT 463 (470)
Q Consensus 448 ~~i~~~l~~l~~~l~~ 463 (470)
+++++++++|++++++
T Consensus 446 edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 446 EDVDDLISDLDIAFKT 461 (464)
T ss_dssp SCHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhh
Confidence 7899999999999875
No 147
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.98 E-value=1.3e-30 Score=262.10 Aligned_cols=329 Identities=14% Similarity=0.096 Sum_probs=238.4
Q ss_pred cCCCeEEccCCCCC--CC-ChHHHHHHHHHHHHcCCC---CCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 92 AGVSVIRLAAGEPD--FD-TPVLIAEAGINAIREGFT---RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~-~~~~~~~a~~~~~~~~~~---~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
+|+.++||..|.+. +. .++.+.+++.+++.+... .| +.....++++.++++ +| .++|++++|+++
T Consensus 74 ~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~----~g----~~~v~~~~sGse 144 (439)
T 2oat_A 74 EGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAF-YNNVLGEYEEYITKL----FN----YHKVLPMNTGVE 144 (439)
T ss_dssp TCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCTTS-EESSHHHHHHHHHHH----HT----CSEEEEESSHHH
T ss_pred CCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcccCcc-CCHHHHHHHHHHHHh----cC----CCEEEEeCCHHH
Confidence 46788999998653 44 689999999999865321 12 223344555555554 34 479999999999
Q ss_pred HHHHHHHHhc---------CCC-CeEEEcCCCCCChHH-HHHHcC------------CEEEEecCcCCCCCccCHHhHhh
Q 012124 166 SILQAVLAVC---------SPG-DEVIIPAPFWVSYPE-MARIAD------------ATPVILPTRISENFLLDPKVLES 222 (470)
Q Consensus 166 al~~~~~~l~---------~~g-d~Vlv~~p~y~~~~~-~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~ 222 (470)
++..+++.+. .+| |.|++.+|+|++... .+...| .+++.+|. .|++.|++
T Consensus 145 A~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~le~ 217 (439)
T 2oat_A 145 AGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPALER 217 (439)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS-------SCHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC-------CCHHHHHH
Confidence 9999998864 367 899999999988654 444444 45666664 28999999
Q ss_pred hcc-CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccC
Q 012124 223 KLT-EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 300 (470)
Q Consensus 223 ~l~-~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~s 300 (470)
+++ +++++|++...+|+||. .++.+.+++|.++|++| |+++|+||+|.++.+.+.. ..+....- ... +.|||
T Consensus 218 ~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-gillI~DEv~~g~g~~g~~-~~~~~~~~-~~D---i~t~s 291 (439)
T 2oat_A 218 ALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRH-QVLFIADEIQTGLARTGRW-LAVDYENV-RPD---IVLLG 291 (439)
T ss_dssp HTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-SGGGGGTC-CCS---EEEEC
T ss_pred HhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCccCCcc-hhHHHhCC-CCc---EEEec
Confidence 994 66776666555678996 56999999999999999 9999999999876544421 11111111 112 23899
Q ss_pred ccccccc-ceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC
Q 012124 301 KAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 379 (470)
Q Consensus 301 K~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 379 (470)
|.++ +| +|+||+++++++++.+.......+++.+++.+.++.++|+.. ++ ++..++++++++++.+.|+++ +
T Consensus 292 K~l~-~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~l-~ 364 (439)
T 2oat_A 292 KALS-GGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVL---EE--ENLAENADKLGIILRNELMKL-P 364 (439)
T ss_dssp GGGG-TTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHTTS-C
T ss_pred cccc-CCCCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHHHHHHHH---hh--hhHHHHHHHHHHHHHHHHHHh-c
Confidence 9998 79 999999999998877765444566778999999888888741 11 245677788888999999876 4
Q ss_pred Cee--cCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHH
Q 012124 380 VKM--SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVE 455 (470)
Q Consensus 380 ~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~ 455 (470)
+.+ ..+..|.++|+++++.. ..+..++++.|+++ ||.+.|+. ++++|++++. ++++++++++
T Consensus 365 ~~~~~~~~~~g~~~~v~l~~~~---------~~~~~~l~~~l~~~-Gv~v~~~~----~~~iRi~~~~~~t~e~i~~~l~ 430 (439)
T 2oat_A 365 SDVVTAVRGKGLLNAIVIKETK---------DWDAWKVCLRLRDN-GLLAKPTH----GDIIRFAPPLVIKEDELRESIE 430 (439)
T ss_dssp TTTEEEEEEETTEEEEEECCCS---------SCCHHHHHHHHHHT-TEECCBSS----SSEEEECCCTTCCHHHHHHHHH
T ss_pred CCCcEEEEeeeeEEEEEEecCc---------cHHHHHHHHHHHHC-CeEEecCC----CCEEEEECccCCCHHHHHHHHH
Confidence 332 12234566888887520 01577899988875 99998842 5789998764 9999999999
Q ss_pred HHHHHHHh
Q 012124 456 RIKKGLLT 463 (470)
Q Consensus 456 ~l~~~l~~ 463 (470)
+|++++++
T Consensus 431 ~l~~~l~~ 438 (439)
T 2oat_A 431 IINKTILS 438 (439)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999875
No 148
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.98 E-value=1.3e-31 Score=264.64 Aligned_cols=329 Identities=13% Similarity=0.092 Sum_probs=239.4
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCC--cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN--AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 172 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~--~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~ 172 (470)
+.+.|..|. ..+++.+.+++.+... ..|.+. ....++++.+++++....| +++++|++|+|+++++.+++.
T Consensus 5 ~~~~~~p~p--~~~~~~v~~a~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~v~~~~g~t~al~~~~~ 77 (385)
T 2bkw_A 5 VDTLLIPGP--IILSGAVQKALDVPSL---GHTSPEFVSIFQRVLKNTRAVFKSAAA--SKSQPFVLAGSGTLGWDIFAS 77 (385)
T ss_dssp CCEECSSSS--CCCCHHHHHTTSCCCC---CTTSHHHHHHHHHHHHHHHHHTTCCGG--GTCEEEEEESCTTHHHHHHHH
T ss_pred cceeecCCC--cCchHHHHHHHhcccc---ccCCHHHHHHHHHHHHHHHHHhCCCCC--CCCceEEEcCchHHHHHHHHH
Confidence 335666652 3346777777654322 122221 1355677888887764333 457899999999999999999
Q ss_pred Hhc---CCCCeEEEc-CCCCCChH-HHHHHcCCEEEEecC-cCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCC
Q 012124 173 AVC---SPGDEVIIP-APFWVSYP-EMARIADATPVILPT-RISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYP 245 (470)
Q Consensus 173 ~l~---~~gd~Vlv~-~p~y~~~~-~~~~~~g~~~~~v~~-~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s 245 (470)
++. ++||+|++. .|.|+.+. ..++..|++++.+++ + .++.+|++.|++++++ ++++|++++++||||.+++
T Consensus 78 ~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 155 (385)
T 2bkw_A 78 NFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLK--IGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSD 155 (385)
T ss_dssp HHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSS--TTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC
T ss_pred HHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCC--CCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcC
Confidence 997 899999877 55665553 677889999999998 5 3456899999999976 8999999999999999999
Q ss_pred HHHHHHHHHHHHhCC-CEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccc-cccceeeEEEcCHHHHH-H
Q 012124 246 KNLLDEIARIVAKHP-RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVA-A 322 (470)
Q Consensus 246 ~~~~~~l~~~~~~~~-~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~-~~G~r~G~~~~~~~~~~-~ 322 (470)
+++|+++|++|+ |++||+|++|+... ...+ +.. .+.++++.|+||.++ .+| +||+++++++++ .
T Consensus 156 ---l~~i~~~~~~~~~~~~li~D~a~~~~~----~~~~---~~~-~~~d~~~~s~~K~~~~~~G--~G~~~~~~~~~~~~ 222 (385)
T 2bkw_A 156 ---LKAISQAIKQTSPETFFVVDAVCSIGC----EEFE---FDE-WGVDFALTASQKAIGAPAG--LSISLCSSRFMDYA 222 (385)
T ss_dssp ---HHHHHHHHHHHCTTSEEEEECTTTTTT----SCCC---TTT-TTCSEEEEESSSTTCCCSC--EEEEEECHHHHHHH
T ss_pred ---HHHHHHHHHhhCCCCEEEEECccccCC----cccc---ccc-cCceEEEecCccccccCCc--ceEEEEcHHHHHHH
Confidence 778999999973 69999999997421 1112 222 245689999999764 456 599999998876 4
Q ss_pred HH------------------HH-hhhc------cCCCChHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHHHHHh-c
Q 012124 323 CN------------------KI-QSQF------TSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSF-G 375 (470)
Q Consensus 323 l~------------------~~-~~~~------~~~~~~~~q~a~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~L-~ 375 (470)
+. .. .... ..+.+...+.++..+++. ..+. +++++++++++++++.+.| +
T Consensus 223 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~ 299 (385)
T 2bkw_A 223 LNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKE---ILEEGLHKRWDLHREMSDWFKDSLVN 299 (385)
T ss_dssp TCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHH---HHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 42 11 0111 134667777777777764 1333 6788899999999999999 8
Q ss_pred cCCCCeecCCC-----ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-CCCcEEEE-ee----
Q 012124 376 ELEGVKMSEPQ-----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-DDTCIRIS-YA---- 444 (470)
Q Consensus 376 ~~~g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~-~~~~iRls-~~---- 444 (470)
++ |+++..+. .+.++|+.++ +..++.+.|.+ +||.+.+|..+. .++++|++ ++
T Consensus 300 ~~-g~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~-~gi~v~~g~~~~~~~~~iRis~~~~~~~ 363 (385)
T 2bkw_A 300 GL-QLTSVSRYPSNMSAHGLTAVYVA--------------DPPDVIAFLKS-HGVVIAGGIHKDIGPKYIRIGHMGVTAC 363 (385)
T ss_dssp TT-CCEESSCSSSTTBCSSCEEEECS--------------CHHHHHHHHHH-TTEECBCCCCTTTGGGEEEECCCGGGTS
T ss_pred hc-CceecccCcccccCCceEEEecC--------------CHHHHHHHHHH-CCeEEeCCCCcccCCCEEEEEccccccc
Confidence 88 88876532 4666888875 35678888865 599999987653 35789999 66
Q ss_pred -cCHHHHHHHHHHHHHHHHhh
Q 012124 445 -ASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 445 -~~~~~i~~~l~~l~~~l~~~ 464 (470)
.+++++++++++|+++++++
T Consensus 364 ~~~~e~i~~~~~~l~~~~~~~ 384 (385)
T 2bkw_A 364 NKNLPYMKNCFDLIKLALQRK 384 (385)
T ss_dssp STTCTHHHHHHHHHHHHTTC-
T ss_pred cCCHHHHHHHHHHHHHHHHhc
Confidence 38899999999999987654
No 149
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.98 E-value=1.6e-31 Score=269.71 Aligned_cols=354 Identities=14% Similarity=0.112 Sum_probs=240.5
Q ss_pred cCCCeEEccCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||+.|. ..+.. ++.+.+++.+++.+. ..|....+..+++.++++++.+..+.. ..++|++|+|++++++
T Consensus 59 ~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~~~sGseA~~ 136 (451)
T 3oks_A 59 DGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDF-THTCFMVTPYEGYVAVCEQLNRLTPVR-GDKRSALFNSGSEAVE 136 (451)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTC-SCCTTTTSCCHHHHHHHHHHHHHSSCC-SSEEEEEESSHHHHHH
T ss_pred CCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhc-ccccCCccCCHHHHHHHHHHHHhCCcC-CCCEEEEeCcHHHHHH
Confidence 466789999884 44444 889999999998653 446555677788899999998876532 3579999999999999
Q ss_pred HHHHHhcC--CCCeEEEcCCCCCChHHHHHHcCC--------------EEEEecCcCC--CC-Ccc--------CHHhHh
Q 012124 169 QAVLAVCS--PGDEVIIPAPFWVSYPEMARIADA--------------TPVILPTRIS--EN-FLL--------DPKVLE 221 (470)
Q Consensus 169 ~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~--------------~~~~v~~~~~--~~-~~~--------d~~~l~ 221 (470)
.+++.+.. .++.|++.+++|+++.......+. .+..+|.... +. +++ +++.++
T Consensus 137 ~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 216 (451)
T 3oks_A 137 NAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAI 216 (451)
T ss_dssp HHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHH
Confidence 99987654 448999999999988766554322 3455554310 00 001 244444
Q ss_pred hhc----cCCceEEEEcCCCCCcc--cCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEE
Q 012124 222 SKL----TEKSRLLILCSPSNPTG--SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLT 295 (470)
Q Consensus 222 ~~l----~~~~~~i~l~~p~nPtG--~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~ 295 (470)
+.+ .++..+++++.|.|++| ...+.+.+++|.++|++| |++||+||+|.+|.+.+.. ..+..+. ....
T Consensus 217 ~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~g~~g~~-~~~~~~~----~~pd 290 (451)
T 3oks_A 217 TVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKN-DVVFIADEVQTGFARTGAM-FACEHEG----IDPD 290 (451)
T ss_dssp HHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-SGGGGGT----CCCS
T ss_pred HHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHc-CCEEEEEecccCCCccccc-hhhhhcC----CCCC
Confidence 433 33445566666655544 455788899999999999 9999999999987554431 1122111 1122
Q ss_pred EeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012124 296 VNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 375 (470)
Q Consensus 296 i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 375 (470)
+.||||.++ +|+|+||+++++++++.+.......+++.+++.|.++.++|+.... +++.++.++..+..++.+.+.+.
T Consensus 291 i~t~sK~l~-~G~~iG~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~ 368 (451)
T 3oks_A 291 LIVTAKGIA-GGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIES-EGLVARAQQIEKIMKDRLGRLQA 368 (451)
T ss_dssp EEEECGGGG-TTSSCEEEEEEHHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeehhhhh-CCcceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHh
Confidence 448999998 6999999999999998887666667888999999999998874211 23344444444445555555555
Q ss_pred cCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHH
Q 012124 376 ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAA 453 (470)
Q Consensus 376 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~ 453 (470)
+++.+....+. |.++|+.+.+...... ...+..++++.|+++ ||.+.|+..| .+++|++++. ++++++++
T Consensus 369 ~~~~~~~~~~~-G~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~-Gv~v~~~~~~--~~~iRi~~~~~~t~e~i~~~ 440 (451)
T 3oks_A 369 EDDRIGDVRGR-GAMIAMELVKAGTTEP----DADLTKALCAGAHAA-GVIVLSCGTY--GNVVRFLPPLSIGDDLLNEG 440 (451)
T ss_dssp HCTTEEEEEEE-TTEEEEEEBSTTSCCB----CHHHHHHHHHHHHHT-TEECEEECTT--SCEEEECCCTTCCHHHHHHH
T ss_pred hCCCeEEEEEe-eEEEEEEEecCccCCC----CHHHHHHHHHHHHhC-CcEEecCCCC--CCEEEEECCCCCCHHHHHHH
Confidence 55544443333 5567777732100000 001356788888766 9999997655 3689998764 89999999
Q ss_pred HHHHHHHHHh
Q 012124 454 VERIKKGLLT 463 (470)
Q Consensus 454 l~~l~~~l~~ 463 (470)
+++|++++++
T Consensus 441 l~~l~~~l~~ 450 (451)
T 3oks_A 441 LDVLEEVLRG 450 (451)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999999874
No 150
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.98 E-value=4.2e-31 Score=271.27 Aligned_cols=325 Identities=13% Similarity=0.104 Sum_probs=247.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcE--EEecChHHHHHHHHHHhcCCC--------C
Q 012124 110 VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQI--LVSNGAKQSILQAVLAVCSPG--------D 179 (470)
Q Consensus 110 ~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i--~it~g~~~al~~~~~~l~~~g--------d 179 (470)
+.+.+++.+........|....+..++++.+++++.+.+|.+.+++++ ++|+|+++++..+++++.++| |
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d 193 (514)
T 3mad_A 114 AFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAP 193 (514)
T ss_dssp HHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSC
T ss_pred HHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCC
Confidence 344444444444445566666778899999999999988976656788 999999999999999998776 9
Q ss_pred eEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhC
Q 012124 180 EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 259 (470)
Q Consensus 180 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~ 259 (470)
+|+++.|+|+++...++..|++++.+|++. ++.+|++.|++++++++++|++++|+||||.+.+ +++|.++|++|
T Consensus 194 ~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~ 268 (514)
T 3mad_A 194 EAVVPVSAHAAFDKAAQYFGIKLVRTPLDA--DYRADVAAMREAITPNTVVVAGSAPGYPHGVVDP---IPEIAALAAEH 268 (514)
T ss_dssp EEEEETTSCTHHHHHHHHHTCEEEEECBCT--TSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCC---HHHHHHHHHHH
T ss_pred eEEEeCccchHHHHHHHHcCCeeEEeeeCC--CCCCCHHHHHHHhccCCEEEEEeCCCCCCccccC---HHHHHHHHHHh
Confidence 999999999999999999999999999974 5669999999999999999999999999999999 78999999999
Q ss_pred CCEEEEEeccccccccC-----CCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhh------
Q 012124 260 PRLLVLSDEIYEHIIYA-----PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS------ 328 (470)
Q Consensus 260 ~~~~iI~Dd~~~~~~~~-----~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~------ 328 (470)
|++||+|++|+++.+. +...+.+. ... .+..+++.|++|.+. +|.++||++++++..........
T Consensus 269 -~i~livDea~~~~~~~~~~~~g~~~~~~~-~~~-~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 344 (514)
T 3mad_A 269 -GIGCHVDACLGGFILPWAERLGYPVPPFD-FRL-EGVTSVSADTHKYGY-GAKGTSVILYRRPDLLHYQYFIAADWPGG 344 (514)
T ss_dssp -TCEEEEECTTTTTTHHHHHHTTCCCCCCS-TTS-TTCCEEEECTTTTTC-CCSSCEEEEESSHHHHTTTCEEESSCTTC
T ss_pred -CCeEEEecccccccchhHHhcCCCCCccc-ccC-CCCcEEEECchhccC-CCCCeEEEEEeCHHHhccccccccccCCC
Confidence 9999999999986541 11111222 111 355788999999974 78899999987765543211000
Q ss_pred -----hccCCCChH---HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccC
Q 012124 329 -----QFTSGASSI---SQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 400 (470)
Q Consensus 329 -----~~~~~~~~~---~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~ 400 (470)
......+.. .+.++...+. ..+++++.++..++++++.+.|++++|+++..+..+ ++|+..+..
T Consensus 345 ~~~~~~~~gs~~~~~~~a~~aal~~l~-----~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~~~~~~~-- 416 (514)
T 3mad_A 345 LYFSPTFAGSRPGALSATAWAAMLSLG-----EEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVASDEL-- 416 (514)
T ss_dssp SEEESSSCSSCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCSS-EEEEECSSS--
T ss_pred cccCCccCCCCchHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCeE-EEEEeCCCC--
Confidence 001122222 2333333332 456788888889999999999999889988766656 466666432
Q ss_pred CcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHHHHHHHHHHHHHHHhhC
Q 012124 401 SEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~---~~~~i~~~l~~l~~~l~~~~ 465 (470)
+..++.+.|.++ ||.+ +|..| ++++|++++. +++++++++++|++++++++
T Consensus 417 ----------~~~~l~~~L~~~-Gi~v-~g~~~--~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~ 470 (514)
T 3mad_A 417 ----------NIYQVMEEMAGR-GWRL-NGLHR--PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVR 470 (514)
T ss_dssp ----------CHHHHHHHHHTT-TCBC-EEETT--TTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHhc-CCEe-ccCCC--CCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 678899988766 8887 55433 5789999983 56899999999999998764
No 151
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.1e-30 Score=265.12 Aligned_cols=330 Identities=12% Similarity=0.070 Sum_probs=251.5
Q ss_pred ChHHHHHHHHHHHHc----CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcC-----CC
Q 012124 108 TPVLIAEAGINAIRE----GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS-----PG 178 (470)
Q Consensus 108 ~~~~~~~a~~~~~~~----~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~-----~g 178 (470)
.++.+.+++.+++.. ....|...+|..++++.+++++.+.+|.+.+++++++|+|+++++.++++++.+ +|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g 155 (497)
T 3mc6_A 76 GGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRG 155 (497)
T ss_dssp CCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSC
T ss_pred CchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 356777777777765 345566677888999999999999999866688999999999999999998865 56
Q ss_pred ---CeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHH
Q 012124 179 ---DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARI 255 (470)
Q Consensus 179 ---d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~ 255 (470)
|+|+++.|+|+.+...++..|++++.+|++. +++.+|++.|++++++++++|++++|+||||.+.+ +++|.++
T Consensus 156 ~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~---l~~i~~l 231 (497)
T 3mc6_A 156 ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDP-TTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADD---IEGLGKI 231 (497)
T ss_dssp CSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCT-TTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCS---CTTTTTH
T ss_pred CCCceEEEeCCccHHHHHHHHHcCCeEEEEecCc-ccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCC---HHHHHHH
Confidence 8999999999999999999999999999874 35679999999999999999999999999999998 7789999
Q ss_pred HHhCCCEEEEEeccccccccC-----CCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhc
Q 012124 256 VAKHPRLLVLSDEIYEHIIYA-----PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 330 (470)
Q Consensus 256 ~~~~~~~~iI~Dd~~~~~~~~-----~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~ 330 (470)
|++| |+++|+|++|+.+... +....+...... .+..+++.|++|.++ ++.++||++++++.+..........
T Consensus 232 a~~~-g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~-~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~ 308 (497)
T 3mc6_A 232 AQKY-KLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRV-PGVTSISCDTHKYGF-APKGSSVIMYRNSDLRMHQYYVNPA 308 (497)
T ss_dssp HHHT-TCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTS-TTCCEEEEETTTTTC-CCSSCEEEECSSHHHHTTTSCCBTT
T ss_pred HHHh-CCEEEEECcchhhhhhhhhhhcccCCccccccC-CCCcEEEECchhhcC-CCCCceeEEecCHHHHhhhhccccc
Confidence 9999 9999999999864321 111110111111 345688899999874 7889999998876654332111100
Q ss_pred -cC----CC------C---hHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCCeecC-CCceEEEeee
Q 012124 331 -TS----GA------S---SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSE-PQGAFYLFID 394 (470)
Q Consensus 331 -~~----~~------~---~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~-~~~g~~~~~~ 394 (470)
.. .. + ..++.++...+. ...+++..++..++++++.+.|++ ++|+++.. +..++ +++.
T Consensus 309 ~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~-----~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~-v~~~ 382 (497)
T 3mc6_A 309 WTGGLYGSPTLAGSRPGAIVVGCWATMVNMG-----ENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSV-ISFS 382 (497)
T ss_dssp CTTSCBCCSSSCSSCBHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSE-EEEE
T ss_pred ccCCCcCCcCcccCCcchhHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeE-EEEe
Confidence 00 00 0 333555555553 455677888888899999999999 68998764 44555 4445
Q ss_pred ccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec-CHHHHHHHHHHHHHHHHhhCC
Q 012124 395 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~-~~~~i~~~l~~l~~~l~~~~~ 466 (470)
.+.. +..++.+.|.++ ||.+.++. .+..+|++++. +++++++++++|++++++++.
T Consensus 383 ~~~~------------~~~~l~~~L~~~-Gi~v~~~~---~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~~~ 439 (497)
T 3mc6_A 383 SKTL------------NIHELSDRLSKK-GWHFNALQ---KPVALHMAFTRLSAHVVDEICDILRTTVQELKS 439 (497)
T ss_dssp CTTT------------THHHHHHHHHTT-TCBCEECC---SSCCEEEECCTTTTCTHHHHHHHHHHHHHHHTC
T ss_pred CCCC------------CHHHHHHHHHhC-CEEEecCC---CCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHh
Confidence 5432 678899988766 89887654 24578999987 889999999999999987754
No 152
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.98 E-value=1.1e-30 Score=262.11 Aligned_cols=333 Identities=14% Similarity=0.091 Sum_probs=229.5
Q ss_pred cCCCeEEccCCCC--CCC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||..|.+ ++. .++.+.+++.+++.+.. .|. .....+++..+++.+.+..| .++|++++|+++++.
T Consensus 63 ~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~-~~~-~~~~~~~~~~l~~~la~~~g----~~~v~~~~sGseA~~ 136 (433)
T 1z7d_A 63 NDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLT-ICS-RAFFSVPLGICERYLTNLLG----YDKVLMMNTGAEANE 136 (433)
T ss_dssp TCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCS-CCC-TTSEEHHHHHHHHHHHHHHT----CSEEEEESSHHHHHH
T ss_pred CCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCC-Ccc-CCcCCHHHHHHHHHHHhhcC----CCeEEEeCCHHHHHH
Confidence 4667899998753 555 68999999999986532 221 11234555666666655554 479999999999999
Q ss_pred HHHHHhc---------CCC-CeEEEcCCCCCChHH-HHHHcC------------CEEEEecCcCCCCCccCHHhHhhhc-
Q 012124 169 QAVLAVC---------SPG-DEVIIPAPFWVSYPE-MARIAD------------ATPVILPTRISENFLLDPKVLESKL- 224 (470)
Q Consensus 169 ~~~~~l~---------~~g-d~Vlv~~p~y~~~~~-~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l- 224 (470)
.+++.+. .+| |.|++.+|+|+++.. .+...| ..++.+|. .|++.|++++
T Consensus 137 ~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~le~~l~ 209 (433)
T 1z7d_A 137 TAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-------DDLEALEEELK 209 (433)
T ss_dssp HHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT-------TCHHHHHHHHT
T ss_pred HHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-------CCHHHHHHHhC
Confidence 9998753 478 999999999988654 333333 24445553 2899999999
Q ss_pred cCCceEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccc
Q 012124 225 TEKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 303 (470)
Q Consensus 225 ~~~~~~i~l~~p~nPtG~~-~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~ 303 (470)
++++++|+++..+|+||.. ++.+.+++|.++|++| |++||+||+|.++.+.+.. ..+....- ... +.||||.+
T Consensus 210 ~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~~g~g~~g~~-~~~~~~~~-~~d---i~t~sK~l 283 (433)
T 1z7d_A 210 DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKY-NVLFVADEVQTGLGRTGKL-LCVHHYNV-KPD---VILLGKAL 283 (433)
T ss_dssp STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-SGGGGGTC-CCS---EEEECGGG
T ss_pred CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHc-CCEEEEecCccCCCcCCcc-hhhHhcCC-CCC---EEEECccc
Confidence 5677776665557789974 7888999999999999 9999999999876544321 11111111 111 33899999
Q ss_pred cccc-ceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC----C
Q 012124 304 AMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----E 378 (470)
Q Consensus 304 ~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~ 378 (470)
+ +| +|+||+++++++++.+.......+++.+++.+.++.++|+.. ++ ++..++++++++++.+.|+++ +
T Consensus 284 ~-~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~l~~~~~ 357 (433)
T 1z7d_A 284 S-GGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVL---IN--EKLCENAEKLGGPFLENLKRELKDSK 357 (433)
T ss_dssp G-TTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred c-CCCCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8 89 999999999998877655444566778999998888888641 11 234555566666666666543 3
Q ss_pred CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHH
Q 012124 379 GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVER 456 (470)
Q Consensus 379 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~ 456 (470)
.+.... ..|.++|+.+++.. .+..++++.|+++ ||.+.|+ ..+++|++++. +++++++++++
T Consensus 358 ~~~~~~-~~g~~~~i~~~~~~----------~~~~~~~~~l~~~-Gv~v~~~----~~~~iRi~~~~~~t~e~i~~~l~~ 421 (433)
T 1z7d_A 358 IVRDVR-GKGLLCAIEFKNEL----------VNVLDICLKLKEN-GLITRDV----HDKTIRLTPPLCITKEQLDECTEI 421 (433)
T ss_dssp TEEEEE-EETTEEEEEECTTT----------CCHHHHHHHHHHT-TEECCEE----TTTEEEECCCTTCCHHHHHHHHHH
T ss_pred CeEEEE-eeeeEEEEEEccCh----------hHHHHHHHHHHHC-CeEEecC----CCCEEEEECCcCCCHHHHHHHHHH
Confidence 222222 34556888886420 1577899988875 9999885 25789998764 99999999999
Q ss_pred HHHHHHhhC
Q 012124 457 IKKGLLTLR 465 (470)
Q Consensus 457 l~~~l~~~~ 465 (470)
|+++++++.
T Consensus 422 l~~~l~~~~ 430 (433)
T 1z7d_A 422 IVKTVKFFD 430 (433)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998764
No 153
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.98 E-value=6.4e-31 Score=265.31 Aligned_cols=353 Identities=11% Similarity=0.037 Sum_probs=236.5
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|.+ .+.. ++.+.+++.+++.+. ..|....+..+.+.++++++.+..+ ...++|++|+|+++++.
T Consensus 42 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~ 118 (448)
T 3dod_A 42 NGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKI-AHSTLLGMTNVPATQLAETLIDISP--KKLTRVFYSDSGAEAME 118 (448)
T ss_dssp TSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTC-SCCCCSSSEEHHHHHHHHHHHHHSC--TTEEEEEEESSHHHHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhc-cCccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCchHHHHH
Confidence 4667899998743 3333 789999999998764 3344556777889999999988765 34589999999999999
Q ss_pred HHHHHhcC----CC----CeEEEcCCCCCChHHHHHHcCC-------------EEEEecCcCCCCCc-----------cC
Q 012124 169 QAVLAVCS----PG----DEVIIPAPFWVSYPEMARIADA-------------TPVILPTRISENFL-----------LD 216 (470)
Q Consensus 169 ~~~~~l~~----~g----d~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~-----------~d 216 (470)
.+++.+.. +| |+|++.+|+|+++.......+. .+..++.. +.+. .|
T Consensus 119 ~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d 196 (448)
T 3dod_A 119 IALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIP--YVYRSESGDPDECRDQC 196 (448)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCC--CCTTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCC--ccccCCccchhhhhHHH
Confidence 99998865 44 9999999999987654433322 22334432 2111 14
Q ss_pred HHhHhhhcc---CCceEEEEcCCC-CCcc-cCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCC
Q 012124 217 PKVLESKLT---EKSRLLILCSPS-NPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 291 (470)
Q Consensus 217 ~~~l~~~l~---~~~~~i~l~~p~-nPtG-~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~ 291 (470)
++.|+++++ +++++|++..++ |++| .+++.+++++|.++|++| |++||+||+|.+|.+.+... ......
T Consensus 197 ~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~-~~~lI~DEv~~g~g~~g~~~-a~~~~~---- 270 (448)
T 3dod_A 197 LRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTY-DVLMIVDEVATGFGRTGKMF-ACEHEN---- 270 (448)
T ss_dssp HHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSS-GGGGGT----
T ss_pred HHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHh-CCEEEEeccccCCCcccchh-hhhhcC----
Confidence 788998886 456666666666 8888 566888899999999999 99999999999875544321 111111
Q ss_pred ceEEEeccCccccccc-ceeeEEEcCHHHHHHHHH-------HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012124 292 RTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363 (470)
Q Consensus 292 ~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~-------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~ 363 (470)
....+.+|||.++ +| +|+||+++++++++.+.. .....+++.+++.|.++.++|+.... ++++++.++..
T Consensus 271 ~~~di~t~sK~l~-~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~ 348 (448)
T 3dod_A 271 VQPDLMAAGKGIT-GGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFES-ENIVEQVAEKS 348 (448)
T ss_dssp CCCSEEEECGGGG-TTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHH
T ss_pred CCCCEEEeccccc-CCcCceEEEEECHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 1122457999998 79 599999999999988765 44446778899999999998874211 34455666666
Q ss_pred HHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCC-CHHHHHHHHHHcCCEEEECCCCCCCCCcEEEE
Q 012124 364 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE-NSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 442 (470)
Q Consensus 364 ~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls 442 (470)
+..++.+.+ +.+++.+.... ..|.++|+.+++...... ...... ...++++.|+++ ||.+.|+ .+++|++
T Consensus 349 ~~~~~~l~~-l~~~~~~~~~~-~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~-Gv~~~~~-----~~~iRi~ 419 (448)
T 3dod_A 349 KKLHFLLQD-LHALPHVGDIR-QLGFMCGAELVRSKETKE-PYPADRRIGYKVSLKMREL-GMLTRPL-----GDVIAFL 419 (448)
T ss_dssp HHHHHHHHH-HTTSTTEEEEE-EETTEEEEEECSBTTTTB-CCCGGGCHHHHHHHHHHHT-TEECCEE-----TTEEEEC
T ss_pred HHHHHHHHH-HhcCCCeEEEE-eeeEEEEEEEccCccccc-ccchhhHHHHHHHHHHHHC-CcEEecc-----CCEEEEE
Confidence 666666666 65564443333 335567888865311000 000000 036788888876 9999886 2789996
Q ss_pred ee--cCHHHHHHHHHHHHHHHHhhCC
Q 012124 443 YA--ASLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 443 ~~--~~~~~i~~~l~~l~~~l~~~~~ 466 (470)
++ .+++++++++++|+++++++..
T Consensus 420 ~~~~~t~e~i~~~l~~l~~~l~~~~~ 445 (448)
T 3dod_A 420 PPLASTAEELSEMVAIMKQAIHEVTS 445 (448)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 55 4999999999999999987653
No 154
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.98 E-value=2.4e-31 Score=260.53 Aligned_cols=327 Identities=13% Similarity=0.070 Sum_probs=230.4
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 174 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l 174 (470)
....+..|.+++++++.+.+++.+.+ ....|++..+..+|++.+++++. . +..++++|+++++.++++++
T Consensus 14 ~~~~~~~~~~~~g~~p~v~~ai~~~~--~~~~~~~~~~~~~l~~~la~~~~----~----~~~i~~~~g~~a~~~a~~~~ 83 (359)
T 3pj0_A 14 PYKLGGNGPRNVGVLTEALQNIDDNL--ESDIYGNGAVIEDFETKIAKILG----K----QSAVFFPSGTMAQQIALRIW 83 (359)
T ss_dssp SEESSSSSCCBHHHHHHHTTTSCTTC--BCCBTTBSHHHHHHHHHHHHHHT----C----SEEEEESCHHHHHHHHHHHH
T ss_pred chhhcCCCccccCCCHHHHHHHHhhc--ccCcccCCHHHHHHHHHHHHHhC----C----CcEEEeCCHHHHHHHHHHHH
Confidence 34455556566556788888887743 24567777788899999998863 2 23355578889999999999
Q ss_pred cCCCCe--EEEcCCCCCChH---HHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCc-ccCCCHHH
Q 012124 175 CSPGDE--VIIPAPFWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT-GSVYPKNL 248 (470)
Q Consensus 175 ~~~gd~--Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPt-G~~~s~~~ 248 (470)
+.+||. |+++.++|.... ......|++++.++.+ ++.+|++.|+++ .+++++|++++||||| |.+++.++
T Consensus 84 ~~~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~ 159 (359)
T 3pj0_A 84 ADRKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGTA---NQLLTIDDIKSL-REPVSSVLIELPQREIGGQLPAFEE 159 (359)
T ss_dssp HHHHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSCT---TSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHH
T ss_pred HhcCCCcEEEEeccceeeehhcchHHHhcCceEEecCCc---CCCcCHHHHHhc-cCCceEEEEEecccCCCcccCCHHH
Confidence 889987 555555543222 2235679999999873 356999999998 7789999999999998 79999999
Q ss_pred HHHHHHHHHhCCCEEEEEecccccccc--CCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHH
Q 012124 249 LDEIARIVAKHPRLLVLSDEIYEHIIY--APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI 326 (470)
Q Consensus 249 ~~~l~~~~~~~~~~~iI~Dd~~~~~~~--~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~ 326 (470)
+++|+++|++| |++||+|++|..+.. .+. +...+.. ...+++.||||.++.+ .. ||+++++++++.+...
T Consensus 160 l~~l~~~~~~~-~~~li~D~a~~~~~~~~~~~---~~~~~~~--~~d~~~~s~sK~~~~~-~g-g~~~~~~~l~~~~~~~ 231 (359)
T 3pj0_A 160 LEKISEYCHEQ-GISLHLDGARLWEITPFYQK---SAEEICA--LFDSVYVSFYKGIGGI-AG-AILAGNDDFVQEAKIW 231 (359)
T ss_dssp HHHHHHHHHHH-TCEEEEEETTCGGGHHHHTC---CHHHHHT--TCSEEEEESSSTTCCS-SC-EEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCEEEEECcchhcchhhhCC---CHHHhhc--cCCEEEEeccccCCCc-ce-EEEECCHHHHHHHHHH
Confidence 99999999999 999999999865331 111 1112211 2225566899998744 33 8889999999999876
Q ss_pred hhhccCCCC--hHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec-CCCceEEEeeeccCccCCcc
Q 012124 327 QSQFTSGAS--SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFSTYYGSEA 403 (470)
Q Consensus 327 ~~~~~~~~~--~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~g~~~~~~~~~~~~~~~ 403 (470)
+.....+.. ...+.++...++ .+.+ ..+.+.++++.+.+.|++++|+++. .+..+.++|++++....
T Consensus 232 ~~~~~~~~~~~~~~~~a~~~~l~------~~~~-~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~--- 301 (359)
T 3pj0_A 232 KRRYGGDLISLYPYILSADYYFE------KRIG-KMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSAD--- 301 (359)
T ss_dssp HHHTTCCCSCCHHHHHHHHHHHH------HHGG-GHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSCHH---
T ss_pred HHHhCCCcchhHHHHHHHHHHHH------HHHH-HhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCccc---
Confidence 554443332 233333333343 2233 3345677888999999998899884 45566667877764200
Q ss_pred cCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC--CcEEEEee-----cCHHHHHHHHHHHHHH
Q 012124 404 EGFGKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYA-----ASLTTLQAAVERIKKG 460 (470)
Q Consensus 404 ~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~--~~iRls~~-----~~~~~i~~~l~~l~~~ 460 (470)
.+..++.+.|.++ ||.+.||..|+.+ +++|+++. .+.+++++++++|++.
T Consensus 302 ------~~~~~l~~~l~~~-GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 302 ------EIGAILTKIQDET-GVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp ------HHHHHHHHHHHHH-CEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred ------hhHHHHHHHHHhc-CcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 0356777777655 9999999877643 58999886 2789999999999875
No 155
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.98 E-value=1.7e-29 Score=252.70 Aligned_cols=327 Identities=18% Similarity=0.252 Sum_probs=240.7
Q ss_pred cCCCCCCCC-hHHHHHHHHHHHHcCCCC-CCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh-cC
Q 012124 100 AAGEPDFDT-PVLIAEAGINAIREGFTR-YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CS 176 (470)
Q Consensus 100 ~~g~~~~~~-~~~~~~a~~~~~~~~~~~-y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l-~~ 176 (470)
+.|.|+.++ ++.+++++.+.+...... |++..|..++++.+++.+.+.+|.+ ++++++++++++.+++.++ ++
T Consensus 5 ~~g~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~----~~i~~~~gt~al~~~~~~~~~~ 80 (418)
T 2c81_A 5 FDHWPEWPQHSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVP----YCVPTTSGSTALMLALEALGIG 80 (418)
T ss_dssp ---CCCSSCCCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTCC
T ss_pred cCCCCCCCCCCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCCC
Confidence 456777666 789999999998775444 8777887777777777777767753 4666777789999999999 89
Q ss_pred CCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHH
Q 012124 177 PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV 256 (470)
Q Consensus 177 ~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~ 256 (470)
+||+|+++.|+|+++...++..|++++.+++++ +++.+|++.|++++++++++|+++ ||||...+ +++|.++|
T Consensus 81 ~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~---~~~i~~~~ 153 (418)
T 2c81_A 81 EGDEVIVPSLTWIATATAVLNVNALPVFVDVEA-DTYCIDPQLIKSAITDKTKAIIPV---HLFGSMAN---MDEINEIA 153 (418)
T ss_dssp TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTCSBCHHHHGGGCCTTEEEECCB---CCTTCCCC---HHHHHHHH
T ss_pred CcCEEEECCCccHhHHHHHHHcCCEEEEEecCC-CCCCcCHHHHHHhhCCCCeEEEEe---CCcCCccc---HHHHHHHH
Confidence 999999999999999999999999999999864 356799999999998889988754 58998877 88999999
Q ss_pred HhCCCEEEEEeccccccc-cCCCCcccccccCCCCCceEEEecc--CcccccccceeeEEEcC-HHHHHHHHHHhhhcc-
Q 012124 257 AKHPRLLVLSDEIYEHII-YAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFT- 331 (470)
Q Consensus 257 ~~~~~~~iI~Dd~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~S~--sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~- 331 (470)
+++ |++||+|++|+.+. +++. .+..+. .+.+.|| ||.++ +| |+||++++ +++++.+........
T Consensus 154 ~~~-~~~li~D~a~~~~~~~~~~---~~~~~~-----~~~~~s~s~~K~~~-~g-~~g~~~~~~~~l~~~~~~~~~~~~~ 222 (418)
T 2c81_A 154 QEH-NLFVIEDCAQSHGSVWNNQ---RAGTIG-----DIGAFSCQQGKVLT-AG-EGGIIVTKNPRLFELIQQLRADSRV 222 (418)
T ss_dssp HHT-TCEEEEECTTCTTCEETTE---ETTSSS-----SEEEEECCTTSSSC-SS-SCEEEEESCHHHHHHHHHHHBTTEE
T ss_pred HHC-CCEEEEECcccccCccCCE---eccccc-----ceEEEeccCCcccC-CC-CeEEEEECCHHHHHHHHHHHHhCcc
Confidence 999 99999999999875 4432 121221 2777888 99998 58 99999995 788888876543311
Q ss_pred -----------CC--C---C--------hHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec-CCC
Q 012124 332 -----------SG--A---S--------SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQ 386 (470)
Q Consensus 332 -----------~~--~---~--------~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~ 386 (470)
+. . . ...+.+.. +.. .+++++..++.++.++++.+.|.+++|+++. .+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~--~~~----l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 296 (418)
T 2c81_A 223 YCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAIL--LDQ----LQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPP 296 (418)
T ss_dssp ECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHH--HHH----HTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCT
T ss_pred ccccccccccchhhccccccccCcCCCcCHHHHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCC
Confidence 10 0 0 11122111 111 1234566666777788899999888888876 455
Q ss_pred c-eEEEe----eeccC----ccCCcccCCCCCCCHHHHHHHHHHcCCEE---EECCCCC---------------------
Q 012124 387 G-AFYLF----IDFST----YYGSEAEGFGKIENSESLCRYLLDKAQVA---LVPGDAF--------------------- 433 (470)
Q Consensus 387 ~-g~~~~----~~~~~----~~~~~~~~~~~~~~~~~l~~~L~~~~gI~---v~pg~~f--------------------- 433 (470)
+ +.+.| +.+++ .. +..++.+.|.+++||. +.+|...
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~ 365 (418)
T 2c81_A 297 QVSRQTYYGYVFRFDPVKFGGL-----------NADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRK 365 (418)
T ss_dssp TEEECCCSEEEEEECGGGTTTC-----------CHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHC
T ss_pred CCcccccEEEEEEEcccccccc-----------CHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccc
Confidence 5 33333 66663 21 6788999887765899 8887511
Q ss_pred -------C-C-------CCcEEEEee--c-CHHHHHHHHHHHHHHHHhhC
Q 012124 434 -------G-D-------DTCIRISYA--A-SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 434 -------~-~-------~~~iRls~~--~-~~~~i~~~l~~l~~~l~~~~ 465 (470)
+ . .+.|||++. . ++++++.+++.|++++++++
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~~ 415 (418)
T 2c81_A 366 TEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKFC 415 (418)
T ss_dssp CHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTTC
T ss_pred cccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhhc
Confidence 0 0 147999997 3 78999999999999988654
No 156
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.97 E-value=1.4e-31 Score=262.64 Aligned_cols=322 Identities=11% Similarity=0.084 Sum_probs=236.6
Q ss_pred eEEccCCCCCCCChHHHHHHHHHHHHcC---------CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCC-c-EEEecChH
Q 012124 96 VIRLAAGEPDFDTPVLIAEAGINAIREG---------FTRYTPNAGTLELRSAICHKLKEENGLSYTPD-Q-ILVSNGAK 164 (470)
Q Consensus 96 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~---------~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~-~-i~it~g~~ 164 (470)
++.++.|. .++|+.+++++.+.+.+. ..+| ..+..++++.+.+.+.+.+|. .++ + +++|+|++
T Consensus 5 ~~l~~~~~--~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~g~--~~~~~~i~~t~g~t 78 (362)
T 2c0r_A 5 AYNFNAGP--AALPLEVLERAQAEFVDYQHTGMSIMEMSHR--GAVYEAVHNEAQARLLALLGN--PTGYKVLFIQGGAS 78 (362)
T ss_dssp CEECCSSS--CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTT--SHHHHHHHHHHHHHHHHHTTC--CSSEEEEEESSHHH
T ss_pred eeeccCCC--CCCCHHHHHHHHHHHhhhhhcCccccccCCC--cHHHHHHHHHHHHHHHHHhCC--CCCcEEEEECCCch
Confidence 46666663 467889999998876431 1112 234566888899999888885 443 5 56789999
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCCCCh--HHHHHHcCCEEEEecCcCC--CCCccCHHhHhhhccCCceEEEEcCCCCCc
Q 012124 165 QSILQAVLAVCSPGDEVIIPAPFWVSY--PEMARIADATPVILPTRIS--ENFLLDPKVLESKLTEKSRLLILCSPSNPT 240 (470)
Q Consensus 165 ~al~~~~~~l~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~--~~~~~d~~~l~~~l~~~~~~i~l~~p~nPt 240 (470)
+++..++.++++|||+|++.++.+... ...++..| +++.++++.+ .+..+|.+.++ +++++++|++++|+|||
T Consensus 79 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~t~~v~~~~~~n~t 155 (362)
T 2c0r_A 79 TQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQDNAAYLHLTSNETIE 155 (362)
T ss_dssp HHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCTTEEEEEEESEETTT
T ss_pred HHHHHHHHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCCCcCEEEEeCCcCcc
Confidence 999999999999999999887765443 35677789 9999988632 22234665554 67789999999999999
Q ss_pred ccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHH
Q 012124 241 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 320 (470)
Q Consensus 241 G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~ 320 (470)
|..++ ++++| + |+++|+|++|+.+.. ...+. +..+++.|+||.+|++| +||++++++++
T Consensus 156 G~~~~--~l~~i------~-~~~vivD~a~~~~~~----~~~~~------~~d~~~~s~~K~~g~~G--~G~l~~~~~~~ 214 (362)
T 2c0r_A 156 GAQFK--AFPDT------G-SVPLIGDMSSDILSR----PFDLN------QFGLVYAGAQKNLGPSG--VTVVIVREDLV 214 (362)
T ss_dssp TEECS--SCCCC------T-TSCEEEECTTTTTSS----CCCGG------GCSEEEEETTTTTCCSS--CEEEEEEGGGS
T ss_pred ceecc--ccccc------C-CCEEEEEChhhccCC----ccchh------HCcEEEEeccccccCcC--cEEEEEcHHHH
Confidence 99754 24444 7 899999999986421 11222 12488889999999778 99999998877
Q ss_pred HHHHHH------------hhhccCCCChHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHHHHHHhccCCCC-eecCC
Q 012124 321 AACNKI------------QSQFTSGASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGELEGV-KMSEP 385 (470)
Q Consensus 321 ~~l~~~------------~~~~~~~~~~~~q~a~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~~ 385 (470)
+.+... .....++++.+.|.++..+|+. ..+ .+++++++++++++++.+.|++++++ .+..+
T Consensus 215 ~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 291 (362)
T 2c0r_A 215 AESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKW---IEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVD 291 (362)
T ss_dssp SSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHH---HHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSC
T ss_pred hhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCC
Confidence 655321 1123456788888988888874 123 67889999999999999999988436 65321
Q ss_pred ---CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHH
Q 012124 386 ---QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKG 460 (470)
Q Consensus 386 ---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~ 460 (470)
.++.++|+.+++.. +..++++.|.++ ||.+.||..| .+++|+|++. ++++++.+++.|+++
T Consensus 292 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~L~~~-gi~~~~g~~~--~~~iRis~~~~~~~e~i~~l~~~l~~~ 357 (362)
T 2c0r_A 292 VDSRSDMNITFRLASEE-----------LEKEFVKASEQE-GFVGLKGHRS--VGGLRASIYNAVPYESCEALVQFMEHF 357 (362)
T ss_dssp GGGBCSSEEEEECSCHH-----------HHHHHHHHHHHT-TEESCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hHHcCCcEEEEEcCCcc-----------hHHHHHHHHHHC-CCeeccCCCC--CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 23455788887432 567888887655 9999988766 4689999986 889999999999998
Q ss_pred HHhh
Q 012124 461 LLTL 464 (470)
Q Consensus 461 l~~~ 464 (470)
+++.
T Consensus 358 ~~~~ 361 (362)
T 2c0r_A 358 KRSR 361 (362)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
No 157
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.97 E-value=2.7e-31 Score=260.01 Aligned_cols=299 Identities=15% Similarity=0.156 Sum_probs=215.0
Q ss_pred CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCC--eEEEcCCCCCChHH---HHHHc
Q 012124 124 FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGD--EVIIPAPFWVSYPE---MARIA 198 (470)
Q Consensus 124 ~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd--~Vlv~~p~y~~~~~---~~~~~ 198 (470)
...|++..+..+|++++++++. . +..++++|+++++.++++++.++|| .|+++.+.|+.... .....
T Consensus 40 ~~~y~~~~~~~~l~~~la~~~~----~----~~~i~~~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~~~~~~ 111 (357)
T 3lws_A 40 SDQYGTGAIIEPFEQKFADVLG----M----DDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELH 111 (357)
T ss_dssp CEETTEETTHHHHHHHHHHHHT----C----SEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHS
T ss_pred cccccCChHHHHHHHHHHHHhC----C----CcEEEecCcHHHHHHHHHHHhhcCCCcEEEecccceeeeeccchhhhcc
Confidence 3558777889999999999863 2 3345557778899999999988998 67777665443322 45667
Q ss_pred CCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCc-ccCCCHHHHHHHHHHHHhCCCEEEEEeccccc--ccc
Q 012124 199 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT-GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH--IIY 275 (470)
Q Consensus 199 g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPt-G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~--~~~ 275 (470)
|++++.++.+ ++.+|++.|+++. +++++++++||||| |.+++.+++++|+++|++| |++||+|++|.. ..+
T Consensus 112 g~~~~~v~~~---~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~-~~~li~D~a~~~~~~~~ 185 (357)
T 3lws_A 112 PIETILVGAA---DRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRER-GIRLHLDGARLFEMLPY 185 (357)
T ss_dssp SCEEEECSCT---TSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHT-TCEEEEEETTHHHHHHH
T ss_pred CcEEEEecCC---CCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHc-CCEEEEECchhhhhhhh
Confidence 9999998852 3459999999984 38999999999998 9999999999999999999 999999999862 111
Q ss_pred CCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCC--ChHHHHHHHHHHhcCCCCh
Q 012124 276 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA--SSISQKAGVAALGLGYAGG 353 (470)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~--~~~~q~a~~~~l~~~~~~~ 353 (470)
.+.. ...+....+ +++.||||.++.++ .||+++++++++.+.+.+.....+. ....+.++...++.
T Consensus 186 ~~~~---~~~~~~~~d--~~~~s~sK~~~~~~--gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----- 253 (357)
T 3lws_A 186 YEKT---AAEIAGLFD--SIYISFYKGLGGIA--GAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYEL----- 253 (357)
T ss_dssp HTCC---HHHHHTTSS--EEEEESSSTTCCSS--CEEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHH-----
T ss_pred cCCC---hHHHHhcCC--EEEEeccccCCCCc--eEEEEcCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHH-----
Confidence 1221 222211122 44789999993233 2999999999999887665444333 33344444444442
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCee-cCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC
Q 012124 354 EVVSKMVKAFRERRDFLVKSFGELEGVKM-SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 432 (470)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~ 432 (470)
+.+++ +.+.++++.+.+.|++++|+++ ..+..++|+|++++.... .+..++.+.|.++ ||.+.||..
T Consensus 254 -~~~~~-~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~-Gi~v~~g~~ 321 (357)
T 3lws_A 254 -RKDRM-GQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAA---------DISPKLEQVQEET-GLGFVGYLV 321 (357)
T ss_dssp -HTTCH-HHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHH---------HHHHHHHHHHHHH-CEESCSCCE
T ss_pred -HHHHH-HHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChH---------HHHHHHHHHHHhc-CeEEecccc
Confidence 33333 3457788899999999989988 356677779999875200 0256777777655 999999976
Q ss_pred CCCCC--cEEEEeec-----CHHHHHHHHHHHHHHH
Q 012124 433 FGDDT--CIRISYAA-----SLTTLQAAVERIKKGL 461 (470)
Q Consensus 433 f~~~~--~iRls~~~-----~~~~i~~~l~~l~~~l 461 (470)
|. ++ ++|++++. +.+++++++++|++++
T Consensus 322 ~~-~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 322 DK-DGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp EC-SSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred cC-CCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 65 44 89999872 7899999999998764
No 158
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.97 E-value=4.8e-30 Score=254.42 Aligned_cols=317 Identities=15% Similarity=0.193 Sum_probs=238.0
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 174 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l 174 (470)
++|+|+. |++ |+.+++++.+.+.... |.+..+..++++.+++++. .+++++|+|+++++.+++.++
T Consensus 9 ~~i~~~~--p~~--~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~al~~~~~~~ 74 (393)
T 1mdo_A 9 DFLPFSR--PAM--GAEELAAVKTVLDSGW--ITTGPKNQELEAAFCRLTG--------NQYAVAVSSATAGMHIALMAL 74 (393)
T ss_dssp CCBCSCC--CCC--CHHHHHHHHHHHHHTC--CSSSHHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHT
T ss_pred cccccCC--CCC--CHHHHHHHHHHHhcCC--cCCChHHHHHHHHHHHHhC--------CCcEEEecChHHHHHHHHHHc
Confidence 3577775 553 4677888888887643 4456788999999999973 248999999999999999999
Q ss_pred -cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHH
Q 012124 175 -CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 253 (470)
Q Consensus 175 -~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~ 253 (470)
+++||+|++++|+|+++...++..|++++.+++++ +++.+|++.|++++++++++|+++ ||||.+.+ +++|.
T Consensus 75 ~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~~~---~~~G~~~~---~~~i~ 147 (393)
T 1mdo_A 75 GIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDR-DTLMVTPEHIEAAITPQTKAIIPV---HYAGAPAD---LDAIY 147 (393)
T ss_dssp TCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCT-TTCCBCHHHHHHHCCTTEEEECCB---CGGGCCCC---HHHHH
T ss_pred CCCCCCEEEeCCCccHhHHHHHHHCCCEEEEEeccC-CcCCCCHHHHHHhcCCCceEEEEe---CCCCCcCC---HHHHH
Confidence 89999999999999999999999999999999875 346799999999998888888765 48999987 88999
Q ss_pred HHHHhCCCEEEEEeccccc-cccCCCCcccccccCCCCCceEEEeccC--cccccccceeeEEEcC-HHHHHHHHHHhhh
Q 012124 254 RIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAGP-KHFVAACNKIQSQ 329 (470)
Q Consensus 254 ~~~~~~~~~~iI~Dd~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~S~s--K~~~~~G~r~G~~~~~-~~~~~~l~~~~~~ 329 (470)
++|+++ |++||+|++|+. +.+.+. + +. . .++++.||| |.+ +|.|+||++++ +++++.+......
T Consensus 148 ~l~~~~-~~~li~D~a~~~g~~~~~~---~---~~--~-~d~~~~S~~k~K~l--~~~~~g~~~~~~~~~~~~l~~~~~~ 215 (393)
T 1mdo_A 148 ALGERY-GIPVIEDAAHATGTSYKGR---H---IG--A-RGTAIFSFHAIKNI--TCAEGGIVVTDNPQFADKLRSLKFH 215 (393)
T ss_dssp HHHHHH-TCCBCEECTTCTTCEETTE---E---TT--S-SSEEEEECCTTSSS--CSSSCEEEEESCHHHHHHHHHHTBT
T ss_pred HHHHHc-CCeEEEECccccCCeECCe---e---cC--C-CCeEEEeCCCCCcc--ccccceEEEeCCHHHHHHHHHHHhc
Confidence 999999 999999999996 333321 1 11 1 568999999 666 44589999997 7888888765432
Q ss_pred cc------------------------CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC-
Q 012124 330 FT------------------------SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE- 384 (470)
Q Consensus 330 ~~------------------------~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~- 384 (470)
.. ...+.+...++...++ .+++..++.++.++.+.+.|.+++ +++..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~-------~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~ 287 (393)
T 1mdo_A 216 GLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQ-------KLDALNARRAAIAAQYHQAMADLP-FQPLSL 287 (393)
T ss_dssp TEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHH-------THHHHHHHHHHHHHHHHHHHHTSS-CEECCC
T ss_pred CCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcCC-cccccC
Confidence 11 1124443333333333 234555555667788888888874 66542
Q ss_pred C-----CceEEEeeeccC---ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--------------CC-------
Q 012124 385 P-----QGAFYLFIDFST---YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--------------GD------- 435 (470)
Q Consensus 385 ~-----~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f--------------~~------- 435 (470)
+ .+++++|+.++. .. +..++.+.|.++ ||.+.+|..+ ..
T Consensus 288 ~~~~~~~~~~~~~v~~~~~~~~~-----------~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (393)
T 1mdo_A 288 PSWEHIHAWHLFIIRVDEARCGI-----------TRDALMASLKTK-GIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNS 355 (393)
T ss_dssp CSSCEECCCSCEEEECCHHHHSS-----------CHHHHHHHHHHT-TBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHH
T ss_pred CCCCCCceeEEEEEEeccccccc-----------CHHHHHHHHHhC-CCCcccccCccccChhhhccCCccCChhHHHHH
Confidence 2 345668888873 21 678898888765 9999987643 11
Q ss_pred CCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 436 DTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 436 ~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
..++|+++.. ++++++.+++.|+++++.+
T Consensus 356 ~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 386 (393)
T 1mdo_A 356 ERICSLPLFPDMTESDFDRVITALHQIAGQG 386 (393)
T ss_dssp TTEEEECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred hCEEEecCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 2379999985 9999999999999988754
No 159
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.97 E-value=7.9e-31 Score=264.80 Aligned_cols=343 Identities=15% Similarity=0.116 Sum_probs=236.7
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCC-cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPN-AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~-~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
+|+.++|++.|.+ ++.. ++.+.+++.+++.+.. +... .+..++++.+++.+.+.++ .++++|++|+|+++++
T Consensus 48 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~ggsea~ 123 (449)
T 3a8u_X 48 KGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD--YSPGFQYGHPLSFQLAEKITDLTP--GNLNHVFFTDSGSECA 123 (449)
T ss_dssp TCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS--CCCSSSCCCHHHHHHHHHHHTTSS--TTEEEEEEESSHHHHH
T ss_pred CCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCC--CccccccCCHHHHHHHHHHHHhCC--CCCCEEEEcCcHHHHH
Confidence 3556789987763 3433 7899999999886532 2222 4556777888888876655 4678999999999999
Q ss_pred HHHHHHhcC--------CCCeEEEcCCCCCChHH-HHHHcCC------------EEEEecCcC--CCC-CccC-------
Q 012124 168 LQAVLAVCS--------PGDEVIIPAPFWVSYPE-MARIADA------------TPVILPTRI--SEN-FLLD------- 216 (470)
Q Consensus 168 ~~~~~~l~~--------~gd~Vlv~~p~y~~~~~-~~~~~g~------------~~~~v~~~~--~~~-~~~d------- 216 (470)
+.+++.+.. +||+|++.+|+|+++.. .+...|. .+..++.+. ..+ .++|
T Consensus 124 ~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~ 203 (449)
T 3a8u_X 124 LTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIA 203 (449)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHH
Confidence 999988764 67999999999998754 4444431 233444321 111 1246
Q ss_pred -HHhHhhhcc----CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCC
Q 012124 217 -PKVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 290 (470)
Q Consensus 217 -~~~l~~~l~----~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~ 290 (470)
++.|+++++ +++++|+++..+||||. ..+.+++++|.++|++| |++||+||+|.+|.+.+.. ..+..+.- .
T Consensus 204 ~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~-~~~li~Dev~~~~g~~g~~-~~~~~~~~-~ 280 (449)
T 3a8u_X 204 LADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQH-NILLVFDEVITGFGRTGSM-FGADSFGV-T 280 (449)
T ss_dssp HHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SHHHHHTC-C
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHh-CCEEEEeccccCccccCcc-hhhhhcCC-C
Confidence 999999886 34555554434678996 56799999999999999 9999999999876543321 11111111 1
Q ss_pred CceEEEeccCccccccc-ceeeEEEcCHHHHHHHHHH---------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHH
Q 012124 291 ERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI---------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 360 (470)
Q Consensus 291 ~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~~---------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~ 360 (470)
.. +.||||.++ +| +|+||+++++++++.+... ....+++.+++.+.++.++|+.. ++ +...
T Consensus 281 ~d---i~s~sK~l~-~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~---~~--~~~~ 351 (449)
T 3a8u_X 281 PD---LMCIAKQVT-NGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLL---QK--ENLV 351 (449)
T ss_dssp CS---EEEECGGGG-TTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHH---HH--TTHH
T ss_pred CC---EEEEccccc-CCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHH---Hh--cCHH
Confidence 12 238999998 68 9999999999998888753 12345677899998888888641 11 2355
Q ss_pred HHHHHHHHHHHHHhccCCCCee--cCCCceEEEeeeccCccCCcccCCCCCC--CHHHHHHHHHHcCCEEEECCCCCCCC
Q 012124 361 KAFRERRDFLVKSFGELEGVKM--SEPQGAFYLFIDFSTYYGSEAEGFGKIE--NSESLCRYLLDKAQVALVPGDAFGDD 436 (470)
Q Consensus 361 ~~~~~~~~~l~~~L~~~~g~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~L~~~~gI~v~pg~~f~~~ 436 (470)
++++++++++.+.|++++++.. ..+..|+++|++++.... .. +..++.+.|.++ ||.+.|+.
T Consensus 352 ~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~--------~~~~~~~~~~~~l~~~-Gv~v~~~g----- 417 (449)
T 3a8u_X 352 QSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDG--------DAIVRPFEAGMALWKA-GFYVRFGG----- 417 (449)
T ss_dssp HHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTT--------BSSHHHHHHHHHHHHH-TEECEEET-----
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcc--------cccccHHHHHHHHHHC-CcEEecCC-----
Confidence 6667777777777766422221 112345678999875310 00 123688888766 99999962
Q ss_pred CcEEEEee--cCHHHHHHHHHHHHHHHHhh
Q 012124 437 TCIRISYA--ASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 437 ~~iRls~~--~~~~~i~~~l~~l~~~l~~~ 464 (470)
+++||++. .+++++++++++|+++++++
T Consensus 418 ~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 418 DTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 78999965 49999999999999998765
No 160
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.97 E-value=5.2e-30 Score=256.10 Aligned_cols=325 Identities=13% Similarity=0.137 Sum_probs=235.4
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCC----CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP----NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 170 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~----~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~ 170 (470)
+.+.|..+.+. +.|+.+.+++.+++......+.. ..|..+..+.+.+.+.+.+|. ++++|++|+|+++++..+
T Consensus 28 ~~~yld~~~~~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~~~~v~~~~g~t~al~~a 104 (416)
T 1qz9_A 28 GVIYLDGNSLG-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGA--RDGEVVVTDTTSINLFKV 104 (416)
T ss_dssp TCEECCTTTSC-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTC--CTTSEEECSCHHHHHHHH
T ss_pred CeEeecCCCcC-CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCC--CcccEEEeCChhHHHHHH
Confidence 45778877766 55778899999988753222211 112233444444444444564 578999999999999988
Q ss_pred HHHhc------CCCCeE-EEcCCCCCChHHHH----HHc--CCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCC
Q 012124 171 VLAVC------SPGDEV-IIPAPFWVSYPEMA----RIA--DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 237 (470)
Q Consensus 171 ~~~l~------~~gd~V-lv~~p~y~~~~~~~----~~~--g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~ 237 (470)
+.+++ ++||+| +++.++|+.+...+ +.. |++++.++. ++.|++++++++++|++++|+
T Consensus 105 l~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~~~l~~~i~~~~~~v~~~~~~ 175 (416)
T 1qz9_A 105 LSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS---------PEELPQAIDQDTAVVMLTHVN 175 (416)
T ss_dssp HHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS---------GGGHHHHCSTTEEEEEEESBC
T ss_pred HHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc---------HHHHHHHhCCCceEEEEeccc
Confidence 88876 899975 45556776555433 223 999998885 788999998899999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccccee-eEEEcC
Q 012124 238 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGP 316 (470)
Q Consensus 238 nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~-G~~~~~ 316 (470)
||||.+++ +++|.++|++| |++||+|++|+. +.....+..+ +..+++.|++|.++ +|.++ ||++++
T Consensus 176 nptG~~~~---l~~i~~l~~~~-~~~li~D~a~~~----g~~~~~~~~~----~~d~~~~s~~K~l~-~g~~~~g~l~~~ 242 (416)
T 1qz9_A 176 YKTGYMHD---MQALTALSHEC-GALAIWDLAHSA----GAVPVDLHQA----GADYAIGCTYKYLN-GGPGSQAFVWVS 242 (416)
T ss_dssp TTTCBBCC---HHHHHHHHHHH-TCEEEEECTTTT----TTSCCCHHHH----TCSEEEECSSSTTC-CCTTCCCEEEEC
T ss_pred cCcccccC---HHHHHHHHHHc-CCEEEEEccccc----cCcCCChhhc----CCCEEEecCcccCC-CCCCCeEEEEEC
Confidence 99999999 88999999999 999999999974 1111122222 34588999999985 78888 999999
Q ss_pred HHHHHHHHHHh-----------------------hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 012124 317 KHFVAACNKIQ-----------------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 373 (470)
Q Consensus 317 ~~~~~~l~~~~-----------------------~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (470)
+++++.+.... .....+.+...+.++.++++.. ..+++++++++++++++++.+.
T Consensus 243 ~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~ 320 (416)
T 1qz9_A 243 PQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVF--AQTDMASLRRKSLALTDLFIEL 320 (416)
T ss_dssp TTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHH
Confidence 88876554321 1122345666777666677642 1245778889999999999999
Q ss_pred hccC-C--CCeecCCC----ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec-
Q 012124 374 FGEL-E--GVKMSEPQ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA- 445 (470)
Q Consensus 374 L~~~-~--g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~- 445 (470)
|+++ + |+.+..+. .+.++|++++ +..++.+.|.++ ||.+.. ..++++|++++.
T Consensus 321 L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~l~~~-gi~~~~----~~~~~lRis~~~~ 381 (416)
T 1qz9_A 321 VEQRCAAHELTLVTPREHAKRGSHVSFEHP--------------EGYAVIQALIDR-GVIGDY----REPRIMRFGFTPL 381 (416)
T ss_dssp HHHHHTTSCCEECSCSSGGGBCSEEEEECT--------------THHHHHHHHHTT-TEECEE----ETTTEEEEECCTT
T ss_pred HHhhccCCCeEEeCCCCHHHcCCEEEEecC--------------CHHHHHHHHHhC-CcEecc----CCCCeEEEeCccc
Confidence 9885 6 88877663 2445888876 456788888755 998753 236799999973
Q ss_pred --CHHHHHHHHHHHHHHHHhhC
Q 012124 446 --SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 446 --~~~~i~~~l~~l~~~l~~~~ 465 (470)
+++++++++++|++++++..
T Consensus 382 ~~t~~~i~~~~~~l~~~~~~~~ 403 (416)
T 1qz9_A 382 YTTFTEVWDAVQILGEILDRKT 403 (416)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHhccc
Confidence 99999999999999998654
No 161
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.97 E-value=4.1e-30 Score=259.50 Aligned_cols=342 Identities=13% Similarity=0.031 Sum_probs=239.9
Q ss_pred cCC--CeEEccCCC--CCCC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHH
Q 012124 92 AGV--SVIRLAAGE--PDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 92 ~~~--~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
+|+ .+|||..|. ..+. .++.+.+++.+++.+.. .+....+..+....+++.+.+..+ ...++|++++|++++
T Consensus 71 dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~L~e~la~~~~--~~~~~v~~~~sGseA 147 (457)
T 3tfu_A 71 DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMN-HVMFGGLTHEPAARLAKLLVDITP--AGLDTVFFSDSGSVS 147 (457)
T ss_dssp TTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCS-CCCSSSEECHHHHHHHHHHHHHSS--TTEEEEEEESSHHHH
T ss_pred CCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhcc-CccccccCCHHHHHHHHHHHHhCC--CCcCEEEEeCcHHHH
Confidence 567 789999883 3444 38899999999987632 221122334566666666666555 355799999999999
Q ss_pred HHHHHHHhcC-------CC-CeEEEcCCCCCChHHHHHHcC--------------CEEEEecCcCCCCCccCHHhHhhhc
Q 012124 167 ILQAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIAD--------------ATPVILPTRISENFLLDPKVLESKL 224 (470)
Q Consensus 167 l~~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~g--------------~~~~~v~~~~~~~~~~d~~~l~~~l 224 (470)
++.+++.+.. +| +.|++.+++|+++.......+ ..+..++...++....|++.|++++
T Consensus 148 ~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l 227 (457)
T 3tfu_A 148 VEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQL 227 (457)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHH
Confidence 9999998765 66 589999999998765554442 1233334322222224889999998
Q ss_pred c---CCceEEEEcC-CCCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEecc
Q 012124 225 T---EKSRLLILCS-PSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF 299 (470)
Q Consensus 225 ~---~~~~~i~l~~-p~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~ 299 (470)
+ +++++|++.. ++||+|..+ +.+.+++|.++|++| |+++|+||+|.+|.+.+.. ..+..+.- ... +.||
T Consensus 228 ~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~-gillI~DEv~~g~gr~G~~-~a~~~~~~-~pd---iit~ 301 (457)
T 3tfu_A 228 AQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRY-EVLLIFDEIATGFGRTGAL-FAADHAGV-SPD---IMCV 301 (457)
T ss_dssp HHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-STHHHHTC-CCS---EEEE
T ss_pred HhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEcCccCCccccch-hHhHhcCC-Cce---EEEE
Confidence 7 5778888877 899999866 788899999999999 9999999999987554431 11111111 122 2389
Q ss_pred Cccccccc-ceeeEEEcCHHHHHHHHHH-----hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 012124 300 SKAFAMTG-WRLGYIAGPKHFVAACNKI-----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 373 (470)
Q Consensus 300 sK~~~~~G-~r~G~~~~~~~~~~~l~~~-----~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (470)
||.++ .| +|+||+++++++++.+... ....+++.+++.+.++.++|+.... + ...+.++++.+++.+.
T Consensus 302 sK~l~-gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~-~----~~~~~~~~~~~~l~~~ 375 (457)
T 3tfu_A 302 GKALT-GGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLG-Q----DWRTRITELAAGLTAG 375 (457)
T ss_dssp CGGGG-TTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHT-S----CHHHHHHHHHHHHHHH
T ss_pred Chhhh-CCCcceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhh-h----HHHHHHHHHHHHHHHH
Confidence 99987 66 6999999999999988632 2335678899999999888873111 2 2344445555555565
Q ss_pred hcc---CCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHH
Q 012124 374 FGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLT 448 (470)
Q Consensus 374 L~~---~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~ 448 (470)
|++ ++++....+. |+++++++++.. +..++.+.|+++ ||.+.|. .+++|+++.. +++
T Consensus 376 L~~l~~~~~v~~vr~~-G~~~~i~l~~~~-----------~~~~~~~~l~~~-Gv~v~~~-----~~~lRi~p~~~~t~e 437 (457)
T 3tfu_A 376 LDTARALPAVTDVRVC-GAIGVIECDRPV-----------DLAVATPAALDR-GVWLRPF-----RNLVYAMPPYICTPA 437 (457)
T ss_dssp HGGGGGSTTEEEEEEC-SSCEEEEESSCC-----------CHHHHHHHHHHT-TEECCCB-----TTEEEECCCTTCCHH
T ss_pred HHHHhcCCCeeeeecC-CeEEEEEECCcc-----------cHHHHHHHHHHC-CeEEEec-----CCEEEEECCCCCCHH
Confidence 554 3455444444 455788887542 578899998877 9999874 2689998654 999
Q ss_pred HHHHHHHHHHHHHHhhCC
Q 012124 449 TLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 449 ~i~~~l~~l~~~l~~~~~ 466 (470)
++++++++|+++++++..
T Consensus 438 ei~~~l~~L~~~l~~~~~ 455 (457)
T 3tfu_A 438 EITQITSAMVEVARLVGS 455 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999987753
No 162
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.97 E-value=6.6e-31 Score=266.58 Aligned_cols=379 Identities=10% Similarity=0.027 Sum_probs=253.9
Q ss_pred CCCCccccCCcccc---ccccccccchhhhhhcCCCcccccccCccccccccCCchHHHHHHHHHHHHhcCCCeEEccCC
Q 012124 26 QIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAG 102 (470)
Q Consensus 26 ~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g 102 (470)
.|+||++++||++| |+.+...+.+-.-| ..|.-+.. ..++..... ....+++.+.|..+
T Consensus 13 ~r~~a~~~~~~~~~~~~a~~l~~~d~l~~~r----~~f~~~~~------~~~~~~~~~--------~~~~~~~~iyld~~ 74 (465)
T 3e9k_A 13 VQRIAAELKCHPTDERVALHLDEEDKLRHFR----ECFYIPKI------QDLPPVDLS--------LVNKDENAIYFLGN 74 (465)
T ss_dssp HHHHHHHHTSCTTSHHHHHHHHHTCTTGGGG----GGEECCBG------GGSTTCCGG--------GSCTTCBCEECBTT
T ss_pred HHHHHHHcCCCCccHHHHHHhcccCcHHHHH----HhcCCCCc------ccccccccc--------cccCCCCeEEecCC
Confidence 79999999999999 76655555553322 22332210 000000000 00123456778776
Q ss_pred CCCCCChHHHHHHHHHHHH----cCCCCCC-CCcCc----HHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 103 EPDFDTPVLIAEAGINAIR----EGFTRYT-PNAGT----LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 103 ~~~~~~~~~~~~a~~~~~~----~~~~~y~-~~~g~----~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
.... .|+.+.+++.+.+. .+...|. ...+. .++++.++++ .| +++++|++|+|+++++++++.+
T Consensus 75 ~~g~-~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~----~g--~~~~~v~~t~g~t~al~~~~~~ 147 (465)
T 3e9k_A 75 SLGL-QPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDI----VG--ANEKEIALMNALTVNLHLLMLS 147 (465)
T ss_dssp TSCC-EETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHH----HT--CCGGGEEECSCHHHHHHHHHHH
T ss_pred ccCC-ChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHH----cC--CCcCCEEEECCHHHHHHHHHHH
Confidence 6542 24444444444332 2211111 11122 4456666655 45 4678999999999999999999
Q ss_pred hcCCCCe---EEEcCCCCCChHH----HHHHcCCEEE-----EecCcCCCCCccCHHhHhhhcc---CCceEEEEcCCCC
Q 012124 174 VCSPGDE---VIIPAPFWVSYPE----MARIADATPV-----ILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSN 238 (470)
Q Consensus 174 l~~~gd~---Vlv~~p~y~~~~~----~~~~~g~~~~-----~v~~~~~~~~~~d~~~l~~~l~---~~~~~i~l~~p~n 238 (470)
+++|||. |++++|+|++... .++..|++++ .+|.+ +++.+|++.|+++++ +++++|+++++||
T Consensus 148 ~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~--~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n 225 (465)
T 3e9k_A 148 FFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPRE--GEETLRIEDILEVIEKEGDSIAVILFSGVHF 225 (465)
T ss_dssp HCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCT--TCSSCCHHHHHHHHHHHGGGEEEEEEESBCT
T ss_pred hccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCC--CCCccCHHHHHHHHHhcCCCeEEEEEeCccc
Confidence 9877655 9999999998544 5667898752 23433 456689999999996 6789999999999
Q ss_pred CcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHH
Q 012124 239 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 318 (470)
Q Consensus 239 PtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~ 318 (470)
|||.+++ +++|.++|++| |++||+|++|+.. .....+.. .+..++++|++|.++....++|+++++++
T Consensus 226 ~tG~~~~---l~~i~~la~~~-g~~vi~D~a~~~g----~~~~~~~~----~~~D~~~~s~~K~l~~gp~~~g~l~~~~~ 293 (465)
T 3e9k_A 226 YTGQHFN---IPAITKAGQAK-GCYVGFDLAHAVG----NVELYLHD----WGVDFACWCSYKYLNAGAGGIAGAFIHEK 293 (465)
T ss_dssp TTCBBCC---HHHHHHHHHHT-TCEEEEECTTTTT----TSCCCHHH----HTCCEEEECSSSTTCCCTTCCCEEEECGG
T ss_pred Ccceeec---HHHHHHHHHHc-CCEEEEEhhhhcC----CcCCchhh----cCCCEEEECcccccccCCCceEEEEEcHH
Confidence 9999999 78899999999 9999999998752 21222222 24458999999999312236899999888
Q ss_pred HHHHHHHHh-------------------------hhccCCCChHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHHHH
Q 012124 319 FVAACNKIQ-------------------------SQFTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVK 372 (470)
Q Consensus 319 ~~~~l~~~~-------------------------~~~~~~~~~~~q~a~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~ 372 (470)
+++.+.... .....+++.+...++.++++. ..++ +++++++++++++++.+
T Consensus 294 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~---~~~~~~~~~~~~~~~~~~~l~~ 370 (465)
T 3e9k_A 294 HAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEI---FKQATMKALRKKSVLLTGYLEY 370 (465)
T ss_dssp GTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHH---HHHcCHHHHHHHHHHHHHHHHH
Confidence 765443110 001124566666666666654 1333 78889999999999999
Q ss_pred HhccC----------CCCeecCCC----ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCc
Q 012124 373 SFGEL----------EGVKMSEPQ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC 438 (470)
Q Consensus 373 ~L~~~----------~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~ 438 (470)
.|+++ +|+++..|. .|.++|+.++. +..++.+.|.++ ||.+. +..+++
T Consensus 371 ~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~-------------~~~~l~~~L~~~-Gi~v~----~~~~~~ 432 (465)
T 3e9k_A 371 LIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV-------------PNKDVFQELEKR-GVVCD----KRNPNG 432 (465)
T ss_dssp HHHHHCC---------CEEECSCSSGGGBCSCEEEEECC-------------TTCCHHHHHHTT-TEECE----EETTTE
T ss_pred HHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC-------------CHHHHHHHHHHC-CEEEe----cCCCCE
Confidence 99874 688887765 25567878862 455788888765 99886 334689
Q ss_pred EEEEee-c--CHHHHHHHHHHHHHHHHhh
Q 012124 439 IRISYA-A--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 439 iRls~~-~--~~~~i~~~l~~l~~~l~~~ 464 (470)
+|+++. . ++++++++++.|++++++.
T Consensus 433 iRis~~~~~~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 433 IRVAPVPLYNSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp EEEBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred EEEeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence 999983 3 8999999999999998754
No 163
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.97 E-value=1.2e-29 Score=257.31 Aligned_cols=346 Identities=14% Similarity=0.103 Sum_probs=240.8
Q ss_pred cCCCeEEccCC--CCCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAG--EPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g--~~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+|||.+| ...+.. ++.+.+++.+++.+....+ ...+..+++.++++++.+..+ ...++|++++|++++++
T Consensus 52 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~-~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~ 128 (476)
T 3i5t_A 52 DGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYAS-PWYMATSPAARLAEKIATLTP--GDLNRIFFTTGGSTAVD 128 (476)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCC-TTTCBCHHHHHHHHHHHTTSS--TTCCEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcc-cCccCCHHHHHHHHHHHhcCC--CCcCEEEEeCchHHHHH
Confidence 56778999988 344443 8899999999987643333 225778899999999988665 35579999999999999
Q ss_pred HHHHHhcC--------CCCeEEEcCCCCCChHHHHHHcCCE---------------EEEecCcCCCCCccC--------H
Q 012124 169 QAVLAVCS--------PGDEVIIPAPFWVSYPEMARIADAT---------------PVILPTRISENFLLD--------P 217 (470)
Q Consensus 169 ~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g~~---------------~~~v~~~~~~~~~~d--------~ 217 (470)
.+++.+.. .++.|++.+|+|+++.......+.. .+..|....+ +..| +
T Consensus 129 ~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~ 207 (476)
T 3i5t_A 129 SALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHA-GNRSQEAFLDDLV 207 (476)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGC-TTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCccccc-CCCchHHHHHHHH
Confidence 99998763 3579999999999988665543322 2222221111 1122 7
Q ss_pred HhHhhhcc----CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccc-ccCCCCC
Q 012124 218 KVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA-SLPGMWE 291 (470)
Q Consensus 218 ~~l~~~l~----~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~-~~~~~~~ 291 (470)
+.|++.++ +++++|++..++|++|. +++.+.+++|.++|++| |+++|.||+|.+|.+.+.. .... .+.- ..
T Consensus 208 ~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~-gillI~DEv~~g~gr~G~~-~~~~~~~~v-~p 284 (476)
T 3i5t_A 208 QEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKH-DILYISDEVVTGFGRCGEW-FASEKVFGV-VP 284 (476)
T ss_dssp HHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-CHHHHTTCC-CC
T ss_pred HHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEecccCCccccCc-eeeecccCC-Cc
Confidence 88888885 45677777777888885 88999999999999999 9999999999987555432 1122 1111 11
Q ss_pred ceEEEeccCccccccc-ceeeEEEcCHHHHHHHHHH-------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012124 292 RTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363 (470)
Q Consensus 292 ~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~ 363 (470)
. +.+|||.++ .| +|+|++++++++++.+... ....+++.+++++.++.++|+.. ++ +.+.+.+
T Consensus 285 d---i~t~sK~l~-~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~---~~--~~~~~~~ 355 (476)
T 3i5t_A 285 D---IITFAKGVT-SGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELM---ER--EGIVDQA 355 (476)
T ss_dssp S---EEEECGGGG-TTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHH---HH--TTHHHHH
T ss_pred c---hhhhhhhhc-CCCcCeEEEEECHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHH---Hh--HHHHHHH
Confidence 2 336899998 79 9999999999999888653 33356788999999999998742 11 2344445
Q ss_pred HHHHHHHHHHhcc---CCCCeecCCCceEEEeeeccCccCCcccCCCCCC----CHHHHHHHHHHcCCEEEECCCCCCCC
Q 012124 364 RERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE----NSESLCRYLLDKAQVALVPGDAFGDD 436 (470)
Q Consensus 364 ~~~~~~l~~~L~~---~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~~gI~v~pg~~f~~~ 436 (470)
+++.+++.+.|+. ++.+....+.+ .++++++.+.... ..... ....+++.|+++ ||.+.|. +
T Consensus 356 ~~~~~~l~~~L~~l~~~~~v~~v~~~G-~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~---g-- 424 (476)
T 3i5t_A 356 REMADYFAAALASLRDLPGVAETRSVG-LVGCVQCLLDPTR----ADGTAEDKAFTLKIDERCFEL-GLIVRPL---G-- 424 (476)
T ss_dssp HHHHHHHHHHHHTTTTSTTEEEEEEET-TEEEEEECCC---------CCHHHHHHHHHHHHHHHHT-TEECEEE---T--
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEecC-ceeEEEEecCccc----cccccchhHHHHHHHHHHHHC-CCEEEec---C--
Confidence 5555555555544 44444444444 4467777542100 00000 145677888766 9999984 2
Q ss_pred CcEEEEe--ecCHHHHHHHHHHHHHHHHhh
Q 012124 437 TCIRISY--AASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 437 ~~iRls~--~~~~~~i~~~l~~l~~~l~~~ 464 (470)
+++||+. ..+++++++++++|+++++++
T Consensus 425 ~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~ 454 (476)
T 3i5t_A 425 DLCVISPPLIISRAQIDEMVAIMRQAITEV 454 (476)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 7999994 459999999999999998765
No 164
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.97 E-value=1.3e-29 Score=257.30 Aligned_cols=349 Identities=17% Similarity=0.141 Sum_probs=255.5
Q ss_pred HHHHHHHHHHHhcCC----CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCC---CcCcHHHHHHHHHHHHHHcCCCC
Q 012124 80 VAITDQATALAQAGV----SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP---NAGTLELRSAICHKLKEENGLSY 152 (470)
Q Consensus 80 ~~~~~~~~~~~~~~~----~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~---~~g~~~lr~~ia~~l~~~~g~~~ 152 (470)
.++......+...+. .++.|+ +.... ..+.+.+++.+.+. ..+.|.+ .+|..++++.+++++.+.+|.+.
T Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~~lg-~~~~~-~~p~v~~~~~~~~~-~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~ 124 (474)
T 1wyu_B 48 LTLVRHYTGLSRRQVGVDTTFYPLG-SCTMK-YNPKLHEEAARLFA-DLHPYQDPRTAQGALRLMWELGEYLKALTGMDA 124 (474)
T ss_dssp HHHHHHHHHHHTTCCCTTTSCCCBT-TTCCC-CCCHHHHHHHHTTS-SCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHhCCCCcccCccccc-ccccc-CCHHHHHHHHHHHH-hcCCCCchhhChHHHHHHHHHHHHHHHHHCCCc
Confidence 355555666665554 356676 44332 23445555554421 2333433 57788999999999999888642
Q ss_pred CCCcEEEecChHHHHHHHHHHh----cCCCC-----eEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhh
Q 012124 153 TPDQILVSNGAKQSILQAVLAV----CSPGD-----EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESK 223 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l----~~~gd-----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 223 (470)
.+++|+|+++++..++.++ .++|| +|++++|+|+.+...++..|++++.++++. ++.+|++.|+++
T Consensus 125 ---~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~--~~~~d~~~L~~~ 199 (474)
T 1wyu_B 125 ---ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGP--EGEVDLEALKRE 199 (474)
T ss_dssp ---EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCT--TSSBCHHHHHHH
T ss_pred ---eeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCCC--CCCcCHHHHHHh
Confidence 4678899999998755554 35888 999999999999999999999999999863 456999999999
Q ss_pred ccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccc
Q 012124 224 LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 303 (470)
Q Consensus 224 l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~ 303 (470)
+++++++|++++| ||||.+. +.+++|+++|++| |+++|+|++|..+.++. ..... .+..+++.|++|.+
T Consensus 200 i~~~t~~v~~~~p-n~~G~~~--~~l~~i~~l~~~~-g~~li~Dea~~~~~~g~---~~~~~----~g~di~~~s~~K~~ 268 (474)
T 1wyu_B 200 LGPHVAALMLTNP-NTLGLFE--RRILEISRLCKEA-GVQLYYDGANLNAIMGW---ARPGD----MGFDVVHLNLHKTF 268 (474)
T ss_dssp CSTTEEEEEECSS-CTTSCCC--TTHHHHHHHHHHH-TCEEEEEGGGGGGTTTT---CCHHH----HTCSEEECCTTTTT
T ss_pred hCCCceEEEEECC-CCCcccC--CCHHHHHHHHHHc-CCEEEEeCchhhhhccC---CCccc----CCCcEEEEeCcccc
Confidence 9989999999987 6899883 2489999999999 99999999998765421 11111 24568899999999
Q ss_pred ccc-c---ceeeEEEcCHHHHHHHHH-H------------------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHH
Q 012124 304 AMT-G---WRLGYIAGPKHFVAACNK-I------------------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 360 (470)
Q Consensus 304 ~~~-G---~r~G~~~~~~~~~~~l~~-~------------------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~ 360 (470)
+.| | .|+||+++++++++.+.. . .....++.+.+.+.++..++... +.++++++.
T Consensus 269 ~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~--g~~~l~~~~ 346 (474)
T 1wyu_B 269 TVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTL--GLEGLKKAA 346 (474)
T ss_dssp CCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred ccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 766 4 599999999988766541 0 01112346777888888877631 256788889
Q ss_pred HHHHHHHHHHHHHhccCCCCeecCCCceEE-EeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC--CCC
Q 012124 361 KAFRERRDFLVKSFGELEGVKMSEPQGAFY-LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--DDT 437 (470)
Q Consensus 361 ~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~--~~~ 437 (470)
+.+.++++++.+.|+++ |+++..+...+. +|+.++... +..+++++|.++ ||.+ |+..|. ..+
T Consensus 347 ~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~L~~~-Gi~~-~~~~~~~~~~~ 412 (474)
T 1wyu_B 347 ALAVLNARYLKELLKEK-GYRVPYDGPSMHEFVAQPPEGF-----------RALDLAKGLLEL-GFHP-PTVYFPLIVKE 412 (474)
T ss_dssp HHHHHHHHHHHHHHHHT-TCBCSSCSSCCSCEEEBCSTTC-----------CHHHHHHHHHHT-TCCC-CEESCSTTSTT
T ss_pred HHHHHHHHHHHHHHhhc-CcEecCCCCcceEEEEEcCCCC-----------CHHHHHHHHHHC-Cccc-cccccccccCC
Confidence 99999999999999987 877643332221 455664321 678899998876 8874 666564 367
Q ss_pred cEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012124 438 CIRISYAA--SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 438 ~iRls~~~--~~~~i~~~l~~l~~~l~~ 463 (470)
++|++++. +++++++++++|++++++
T Consensus 413 ~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 413 ALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp CEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred EEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 99999997 899999999999998764
No 165
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.97 E-value=8.3e-30 Score=258.16 Aligned_cols=351 Identities=14% Similarity=0.090 Sum_probs=238.1
Q ss_pred cCCCeEEccCC--CCCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAG--EPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g--~~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+|||+.| ...+.. ++.+.+++.+++.+....|....+..+.+..+++.+.+..+ ...++|++++|++++++
T Consensus 53 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~lae~l~~~~~--~~~~~v~~~~sGseA~~ 130 (472)
T 3hmu_A 53 EGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAP--GDLNHVFFAGGGSEAND 130 (472)
T ss_dssp TCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSSSEECHHHHHHHHHHHHHSC--TTEEEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHHH
Confidence 57788999988 344443 79999999999987554554445667888888888887665 35679999999999999
Q ss_pred HHHHHhcC--------CCCeEEEcCCCCCChHHHHHHcCC------------EEEEecCcC--C-CCCccC--------H
Q 012124 169 QAVLAVCS--------PGDEVIIPAPFWVSYPEMARIADA------------TPVILPTRI--S-ENFLLD--------P 217 (470)
Q Consensus 169 ~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g~------------~~~~v~~~~--~-~~~~~d--------~ 217 (470)
.+++.+.. +++.|++.+|+|+++.......+. .+..++... . +++ .| +
T Consensus 131 ~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~ 209 (472)
T 3hmu_A 131 TNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARA 209 (472)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHH
Confidence 99998864 468999999999998766554433 234444321 0 111 23 7
Q ss_pred HhHhhhcc----CCceEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCc
Q 012124 218 KVLESKLT----EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 292 (470)
Q Consensus 218 ~~l~~~l~----~~~~~i~l~~p~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (470)
+.|++.++ +++++|++..++|++|... +++.+++|.++|++| |+++|.||+|.+|...+.. .....+.- ...
T Consensus 210 ~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~-gillI~DEv~~gfgr~G~~-~a~~~~~v-~pd 286 (472)
T 3hmu_A 210 RELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKY-DILLIADEVICGFGRTGNW-FGTQTMGI-RPH 286 (472)
T ss_dssp HHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-CHHHHHTC-CCS
T ss_pred HHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEccccCCcccCcc-chhHHhCC-CCc
Confidence 88888885 3556666666688888755 899999999999999 9999999999987554421 11111111 112
Q ss_pred eEEEeccCcccccccceeeEEEcCHHHHHHHHH--HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHH-HHHHH
Q 012124 293 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK--IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR-ERRDF 369 (470)
Q Consensus 293 ~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~--~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ 369 (470)
+.+|||.++..|+|+||+++++++++.+.. .....+++.++++|.++.++|+.... ++ +.+.++ ++.++
T Consensus 287 ---i~t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~-~~----~~~~~~~~~~~~ 358 (472)
T 3hmu_A 287 ---IMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEE-EN----ILDHVRNVAAPY 358 (472)
T ss_dssp ---EEEECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHH-TT----HHHHHHHTHHHH
T ss_pred ---eeeechhhhcCCcceEEEEECHHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHH-hH----HHHHHHHHHHHH
Confidence 336899997344999999999999998832 12334677899999999998874110 22 333334 44444
Q ss_pred HHHHh---ccCCCCeecCCCceEEEeeeccCccCCcccCCCC--CCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee
Q 012124 370 LVKSF---GELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK--IENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 444 (470)
Q Consensus 370 l~~~L---~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~ 444 (470)
+.+.| .+++.+....+.+.| +++++....... ..... ......+++.|+++ ||.+.|+. +++|++..
T Consensus 359 l~~~L~~l~~~~~v~~vr~~G~~-~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~g-----~~iRi~p~ 430 (472)
T 3hmu_A 359 LKEKWEALTDHPLVGEAKIVGMM-ASIALTPNKASR-AKFASEPGTIGYICRERCFAN-NLIMRHVG-----DRMIISPP 430 (472)
T ss_dssp HHHHHHGGGGSTTEEEEEEETTE-EEEEECSCGGGT-CCBSSCTTHHHHHHHHHHHHT-TBCCEEET-----TEEEECCC
T ss_pred HHHHHHHHhcCCCeEEEEecCce-EEEEEecCcccc-ccccchhHHHHHHHHHHHHHC-CcEEEecC-----CEEEEECC
Confidence 44444 344545444444444 666664320000 00000 00156778888766 99999863 79999954
Q ss_pred --cCHHHHHHHHHHHHHHHHhh
Q 012124 445 --ASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 445 --~~~~~i~~~l~~l~~~l~~~ 464 (470)
.+++++++++++|+++++++
T Consensus 431 ~~~t~e~i~~~l~~l~~~l~~~ 452 (472)
T 3hmu_A 431 LVITPAEIDEMFVRIRKSLDEA 452 (472)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 49999999999999998764
No 166
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.97 E-value=4.5e-30 Score=257.69 Aligned_cols=347 Identities=12% Similarity=0.087 Sum_probs=231.5
Q ss_pred cCCCeEEccCCCC--CCC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|++.|.. .+. .++.+.+++.+++.+....+.+.....+|++.+++++ + .+++|++|+|++++++
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~---~~~~v~~~~~Gsea~~ 123 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIERV----P---SIEIVRMVNSGTEATM 123 (429)
T ss_dssp TCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCCSSCCHHHHHHHHHHHHHS----T---TCSEEEEESSHHHHHH
T ss_pred CCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCcCCCCHHHHHHHHHHHHhC----C---CCCEEEEeCChHHHHH
Confidence 5778999999864 344 3899999999998775433436666667777777664 3 4689999999999999
Q ss_pred HHHHHhcC--CCCeEEEcCCCCCChHHHHHH-cCCEEEEecCcCCCCCc------------cCHHhHhhhcc---CCceE
Q 012124 169 QAVLAVCS--PGDEVIIPAPFWVSYPEMARI-ADATPVILPTRISENFL------------LDPKVLESKLT---EKSRL 230 (470)
Q Consensus 169 ~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~------------~d~~~l~~~l~---~~~~~ 230 (470)
.+++.+.. +++.|++.+|+|+++...+.. .|.....++.....+.. -|++.|+++++ +++++
T Consensus 124 ~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~ 203 (429)
T 3k28_A 124 SALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIAC 203 (429)
T ss_dssp HHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEE
T ss_pred HHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEE
Confidence 99988754 668999999999876543322 22211111111111110 18899999886 34555
Q ss_pred EEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccce
Q 012124 231 LILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 309 (470)
Q Consensus 231 i~l~~p~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r 309 (470)
|++..++|++|... +.+++++|.++|++| |+++|+||+|.+| ..+.. .....+. ....+.||||.++ .|+|
T Consensus 204 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DEv~~g~-~~g~~-~~~~~~~----~~~di~t~sK~~~-~G~~ 275 (429)
T 3k28_A 204 VIVEPVAGNMGVVPPQPGFLEGLREVTEQN-GALLIFDEVMTGF-RVAYN-CGQGYYG----VTPDLTCLGKVIG-GGLP 275 (429)
T ss_dssp EEECSSBCTTSCBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTT-TSSTT-HHHHHHT----CCCSEEEECGGGG-TTSC
T ss_pred EEEcCCCCCCCcccCCHHHHHHHHHHHHHc-CCEEEEecccccc-ccCcc-hHHHHhC----CCCceehhhhhhc-CCCC
Confidence 55555566666554 688899999999999 9999999999987 44321 1111111 1112457999998 7999
Q ss_pred eeEEEcCHHHHHHHHHHh---hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC----CCCee
Q 012124 310 LGYIAGPKHFVAACNKIQ---SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EGVKM 382 (470)
Q Consensus 310 ~G~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~ 382 (470)
+||+++++++++.+.... ...+++.+++.|.++.++|+.. + ++..+.++++++++.+.|+++ +.+..
T Consensus 276 iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~---~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 349 (429)
T 3k28_A 276 VGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQL---T---PESYVEFERKAEMLEAGLRKAAEKHGIPHH 349 (429)
T ss_dssp CEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTC---C---HHHHHHHHHHHHHHHHHHHHHHHHTTCCCE
T ss_pred eEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHhhCCCCEE
Confidence 999999999988775432 2345678999999999999863 2 455666666666666666543 33333
Q ss_pred cCCCceEEEeeeccCccCCccc--CCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 012124 383 SEPQGAFYLFIDFSTYYGSEAE--GFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKG 460 (470)
Q Consensus 383 ~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~ 460 (470)
..+. |.++++.+.+....... .........++++.|+++ ||.+.|+. .+.+|+++..+++++++++++|+++
T Consensus 350 ~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~r~~~~~t~e~i~~~l~~l~~~ 423 (429)
T 3k28_A 350 INRA-GSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQ-GVFLPPSQ----FEGLFLSTVHSDADIEATIAAAEIA 423 (429)
T ss_dssp EEEE-TTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSST----TSCBCCCTTCCHHHHHHHHHHHHHH
T ss_pred EEee-ccEEEEEEecCCcccccccccccHHHHHHHHHHHHHC-CeEEecCC----CCCEEEECCCCHHHHHHHHHHHHHH
Confidence 3333 44466665421000000 000000236778888765 99999863 3578998877999999999999999
Q ss_pred HHhhC
Q 012124 461 LLTLR 465 (470)
Q Consensus 461 l~~~~ 465 (470)
+++++
T Consensus 424 l~~~~ 428 (429)
T 3k28_A 424 MSKLK 428 (429)
T ss_dssp HHTCC
T ss_pred HHHHh
Confidence 98764
No 167
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.97 E-value=6.5e-30 Score=258.38 Aligned_cols=337 Identities=13% Similarity=0.110 Sum_probs=218.2
Q ss_pred cCCCeEEccCCCCC--CC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||+.|.+. +. .++.+.+++.+++.... .| .+..++++++++++.+.++ .+++|++++|+++++.
T Consensus 55 ~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~-~~---~~~~~~~~~la~~l~~~~~---~~~~v~~~~gg~eA~~ 127 (453)
T 2cy8_A 55 DGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGV-QY---AASHPLEVRWAERIVAAFP---SIRKLRFTGSGTETTL 127 (453)
T ss_dssp TCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTC-SS---CSSCHHHHHHHHHHHHHCT---TCSEEEEESCHHHHHH
T ss_pred CCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhCC-CC---CCCCHHHHHHHHHHHhhCC---CCCEEEEeCCHHHHHH
Confidence 35578999998643 22 57899999999986632 33 2467899999999988764 5689999999999999
Q ss_pred HHHHH---hcCCCCeEEEcCCCCCChHHHHHH-c----------CCE------EEEecCcCCCCCccCHHhHhhhcc---
Q 012124 169 QAVLA---VCSPGDEVIIPAPFWVSYPEMARI-A----------DAT------PVILPTRISENFLLDPKVLESKLT--- 225 (470)
Q Consensus 169 ~~~~~---l~~~gd~Vlv~~p~y~~~~~~~~~-~----------g~~------~~~v~~~~~~~~~~d~~~l~~~l~--- 225 (470)
.+++. +.+ ++.|++.+|+|+++...+.. . |.. ++.++. .|++.|+++++
T Consensus 128 ~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~~~ 199 (453)
T 2cy8_A 128 LALRVARAFTG-RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-------DDIEGMREVFANHG 199 (453)
T ss_dssp HHHHHHHHHHC-CCEEEEECC----------------------------CGGGEEEECT-------TCHHHHHHHHHHHG
T ss_pred HHHHHHHHhhC-CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-------CCHHHHHHHHHhcC
Confidence 99987 655 46788888999977653322 1 221 233332 38999999886
Q ss_pred CCceEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccc
Q 012124 226 EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 304 (470)
Q Consensus 226 ~~~~~i~l~~p~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~ 304 (470)
+++++|+++..+||||..+ +.+++++|.++|++| |++||+||+|.++ +.+. ...+..+.- ... +.||||.++
T Consensus 200 ~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~-~~g~-~~~~~~~~~-~~d---i~s~sK~l~ 272 (453)
T 2cy8_A 200 SDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQY-GALFILDEVISGF-RVGN-HGMQALLDV-QPD---LTCLAKASA 272 (453)
T ss_dssp GGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHT-TCEEEEECTTTTT-TTCT-THHHHHHTC-CCS---EEEEEGGGG
T ss_pred CCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEecCcccc-ccCc-hhhhHHhCC-CCc---EEEEChhhh
Confidence 3556655544467899765 799999999999999 9999999999987 4332 111111111 111 448999998
Q ss_pred cccceeeEEEcCHHHHHHHHH-----HhhhccCCCChHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHHHHHhccC-
Q 012124 305 MTGWRLGYIAGPKHFVAACNK-----IQSQFTSGASSISQKAGVAALGL-GYAGGEVVSKMVKAFRERRDFLVKSFGEL- 377 (470)
Q Consensus 305 ~~G~r~G~~~~~~~~~~~l~~-----~~~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 377 (470)
+|+|+||+++++++++.+.. .....+++.+++.+.++.++|+. . .++..++++++++++.+.|+++
T Consensus 273 -~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~------~~~~~~~~~~~~~~l~~~L~~~~ 345 (453)
T 2cy8_A 273 -GGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL------EDDVCAKINDLGQFAREAMNHLF 345 (453)
T ss_dssp -TTSSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH------HTTHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999998887654 12234567889999988888863 2 1223444455555555555442
Q ss_pred --CCCeecCCCceEEEeeeccC-----c--cCCcccCCC--CCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecC
Q 012124 378 --EGVKMSEPQGAFYLFIDFST-----Y--YGSEAEGFG--KIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAAS 446 (470)
Q Consensus 378 --~g~~~~~~~~g~~~~~~~~~-----~--~~~~~~~~~--~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~ 446 (470)
.++....+..|.++|+++++ . .. ...... ...+..++++.|+++ ||.+.|+ +.+|+++..+
T Consensus 346 ~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~-Gv~v~~~------~~~~l~~~~t 417 (453)
T 2cy8_A 346 ARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSI-TRAEVARPDVKMIAAMRMALILE-GVDIGGR------GSVFLSAQHE 417 (453)
T ss_dssp HHTTCCEEEECCTTEEEEEETSCTTCCCCHHH-HTTCSCCCCHHHHHHHHHHHHHT-TEECBTT------TEEECCTTCC
T ss_pred hhCCCcEEEEEeeeEEEEEEeccccccccccc-cccccccccHHHHHHHHHHHHHC-CeEEeCC------CCEEeeccCC
Confidence 13322123345568888874 1 00 000000 000246788888765 9999653 2478876669
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q 012124 447 LTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 447 ~~~i~~~l~~l~~~l~~~~ 465 (470)
++++++++++|++++++++
T Consensus 418 ~~~i~~~l~~l~~~l~~~~ 436 (453)
T 2cy8_A 418 REHVEHLVTTFDRVLDRLA 436 (453)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988654
No 168
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.97 E-value=3.6e-29 Score=246.43 Aligned_cols=323 Identities=15% Similarity=0.215 Sum_probs=235.8
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
.++++|+.+.|+.. + +.+++.+.+... .|.+..+..++++.+++++. .+++++++|+++++..++.+
T Consensus 6 ~~~~~l~~~~~~~~--~-~~~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~a~~~~~~~ 72 (374)
T 3uwc_A 6 VPYSYLERQFADIE--P-YLNDLREFIKTA--DFTLGAELEKFEKRFAALHN--------APHAIGVGTGTDALAMSFKM 72 (374)
T ss_dssp BCSCCHHHHTSSCH--H-HHHHHHHHHHHT--CCSSCHHHHHHHHHHHHHTT--------CSEEEEESCHHHHHHHHHHH
T ss_pred ceeeccccCCCCch--H-HHHHHHHHHHcC--CcccChhHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHH
Confidence 35678888888763 3 888888887654 46688899999999999863 23889999999999999999
Q ss_pred h-cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHH
Q 012124 174 V-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 252 (470)
Q Consensus 174 l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l 252 (470)
+ +++||+|++++|+|+++...++..|++++.++++ +++.+|++.+++++++++++|+ |+||||...+ +++|
T Consensus 73 ~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~---~~~i 144 (374)
T 3uwc_A 73 LNIGAGDEVITCANTFIASVGAIVQAGATPVLVDSE--NGYVIDPEKIEAAITDKTKAIM---PVHYTGNIAD---MPAL 144 (374)
T ss_dssp TTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC--TTSSBCGGGTGGGCCTTEEEEC---CBCGGGCCCC---HHHH
T ss_pred cCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecC--CCCCcCHHHHHHhCCCCceEEE---EeCCcCCcCC---HHHH
Confidence 9 9999999999999999999999999999999987 4567999999999988888777 8999999988 8889
Q ss_pred HHHHHhCCCEEEEEeccccccc-cCCCCcccccccCCCCCceEEEeccC--cccccccceeeEEEcC-HHHHHHHHHHhh
Q 012124 253 ARIVAKHPRLLVLSDEIYEHII-YAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAGP-KHFVAACNKIQS 328 (470)
Q Consensus 253 ~~~~~~~~~~~iI~Dd~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~S~s--K~~~~~G~r~G~~~~~-~~~~~~l~~~~~ 328 (470)
.++|+++ |+++|+|++|+.+. +++. .+..+ ..+++.||| |.++.+|. .|+++++ +++.+.+.....
T Consensus 145 ~~~~~~~-~~~li~D~~~~~g~~~~~~---~~~~~-----~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~~~~~~~~~~ 214 (374)
T 3uwc_A 145 AKIAKKH-NLHIVEDACQTILGRINDK---FVGSW-----GQFACFSLHPLKNLNVWSD-AGVIITHSDEYAEKLRLYRN 214 (374)
T ss_dssp HHHHHHT-TCEEEEECTTCTTCEETTE---ETTSS-----SSEEEEECSSSSSSCCSSC-CEEEEESCHHHHHHHHHHTB
T ss_pred HHHHHHc-CCEEEEeCCCccCceeCCe---ecccc-----ccEEEEeCCCCCcCCccce-eEEEEeCCHHHHHHHHHHHh
Confidence 9999999 99999999998643 2211 11111 247778866 99973365 8888865 567777766543
Q ss_pred h------------ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC-CeecC-CCceEEEeee
Q 012124 329 Q------------FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG-VKMSE-PQGAFYLFID 394 (470)
Q Consensus 329 ~------------~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~-~~~g~~~~~~ 394 (470)
. .+...+.+.+.+.... .+.+++..++.++..+.+.+.|.++++ +.+.. +.++...|..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~aa~~~~~-------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (374)
T 3uwc_A 215 HGLINRDVCVEYGINCRMDTIQAVIANRL-------MNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHI 287 (374)
T ss_dssp TTEEETTEESSCCCBCBCCHHHHHHHHHH-------GGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSS
T ss_pred cCccccCccccccccCCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEE
Confidence 1 1111233332222222 223456667777888888899988866 66532 2333333322
Q ss_pred ccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC----------------C-------CCcEEEEeec--CHHH
Q 012124 395 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG----------------D-------DTCIRISYAA--SLTT 449 (470)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~----------------~-------~~~iRls~~~--~~~~ 449 (470)
++-.. .+..++.+.|.++ ||.+.++.... . .+.+|+++.. ++++
T Consensus 288 ~~~~~----------~~~~~l~~~L~~~-gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~ed 356 (374)
T 3uwc_A 288 YVLRV----------KYRDQLFQYLKDN-GIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEE 356 (374)
T ss_dssp EEEEE----------TTHHHHHHHHHHT-TBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHH
T ss_pred EEEEc----------CCHHHHHHHHHHC-CCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHH
Confidence 21110 1567888888766 99999875210 0 1579999886 8999
Q ss_pred HHHHHHHHHHHHHhhC
Q 012124 450 LQAAVERIKKGLLTLR 465 (470)
Q Consensus 450 i~~~l~~l~~~l~~~~ 465 (470)
++++++.|++++++.+
T Consensus 357 i~~~~~~l~~~l~~~~ 372 (374)
T 3uwc_A 357 INYIIKKVREFYLEKH 372 (374)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999998654
No 169
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.97 E-value=2.9e-29 Score=250.67 Aligned_cols=335 Identities=13% Similarity=0.067 Sum_probs=231.7
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCC-CC------CCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGF-TR------YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~-~~------y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
+.++|..+... .++.+++++.+.+.+.. .. |.......++++.+.+.+.+.+|. ++++|++++| ++++
T Consensus 26 ~~i~l~~~~~~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~--~~~~i~~~sG-t~a~ 100 (417)
T 3n0l_A 26 EGLEMIASENF--TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNC--KFANVQPNSG-SQAN 100 (417)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCCSSH-HHHH
T ss_pred cCeeeecccCC--CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCC--CCcceEeccH-HHHH
Confidence 34778666544 37889999888774321 22 323334456777666677776774 5667888888 7999
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHH---HHHH--cCCEEEEecCcCCCCCccCHHhHhhhcc-CCceEEEEcCCCCCcc
Q 012124 168 LQAVLAVCSPGDEVIIPAPFWVSYPE---MARI--ADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTG 241 (470)
Q Consensus 168 ~~~~~~l~~~gd~Vlv~~p~y~~~~~---~~~~--~g~~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG 241 (470)
.+++.+++++||+|++++|+|+++.. .+.. .+..+++++++ +++.+|++.|+++++ +++++|++++++| |
T Consensus 101 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--G 176 (417)
T 3n0l_A 101 QGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE--LDGRIDYEKVREIAKKEKPKLIVCGASAY--A 176 (417)
T ss_dssp HHHHHHHSCTTCEEEEECC----------------CCSEEEEECCC--TTSSCCHHHHHHHHHHHCCSEEEECCSSC--C
T ss_pred HHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCC--CCCCcCHHHHHHHHHhcCCeEEEECCccc--C
Confidence 99999999999999999999987654 3333 44556667665 456699999999997 6899998887776 7
Q ss_pred cCCCHHHHHHHHHHHHhCCCEEEEEecccc-ccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC-HHH
Q 012124 242 SVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHF 319 (470)
Q Consensus 242 ~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~-~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~-~~~ 319 (470)
..++ +++|.++|++| |++||+|++|. ++.+.+.....+. ...+++.||||.+ +|+|.||++++ +++
T Consensus 177 ~~~~---l~~i~~l~~~~-~~~li~Dea~~~g~~~~~~~~~~~~------~~di~~~s~sK~l--~g~~~G~~~~~~~~~ 244 (417)
T 3n0l_A 177 RVID---FAKFREIADEI-GAYLFADIAHIAGLVVAGEHPSPFP------YAHVVSSTTHKTL--RGPRGGIIMTNDEEL 244 (417)
T ss_dssp SCCC---HHHHHHHHHHH-TCEEEEECTTTHHHHHTTSSCCCTT------TCSEEEEESSTTT--CSCSCEEEEESCHHH
T ss_pred ccCC---HHHHHHHHHHc-CCEEEEECccchhhhhcccCCCccc------cceEEEeeCcccc--CCCCeeEEEECCHHH
Confidence 8888 88999999999 99999999964 4444332111111 3458999999987 67889999998 789
Q ss_pred HHHHHHHhhhccCC-CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC-CCceEEEeeeccC
Q 012124 320 VAACNKIQSQFTSG-ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFST 397 (470)
Q Consensus 320 ~~~l~~~~~~~~~~-~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g~~~~~~~~~ 397 (470)
++.+.........+ ++...+.++..++... ..+++++.+++++++++.+.+.|.+. |+.+.. +..+.++|+.++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 321 (417)
T 3n0l_A 245 AKKINSAIFPGIQGGPLMHVIAAKAVGFKFN--LSDEWKVYAKQVRTNAQVLANVLMDR-KFKLVSDGTDNHLVLMSFLD 321 (417)
T ss_dssp HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTT
T ss_pred HHHHhhhhCCcccCCcHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHhC-CceeccCCCCceEEEEEccc
Confidence 88888765544333 3444444444444421 13566788888899999999999884 887754 2345567888753
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC------CCcEEEEeec------CHHHHHHHHHHHHHHHHhh
Q 012124 398 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD------DTCIRISYAA------SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~------~~~iRls~~~------~~~~i~~~l~~l~~~l~~~ 464 (470)
.- .+...+.+.|. ++||.+.++..+.. .+.+|+++.. +++++++++++|++++++.
T Consensus 322 ~~----------~~~~~~~~~l~-~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 389 (417)
T 3n0l_A 322 RE----------FSGKDADLALG-NAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDV 389 (417)
T ss_dssp SS----------SCHHHHHHHHH-HTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CC----------CCHHHHHHHHH-HcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 20 15666666554 56999987653321 3569999863 5799999999999998753
No 170
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.97 E-value=1.1e-29 Score=254.73 Aligned_cols=343 Identities=14% Similarity=0.131 Sum_probs=228.3
Q ss_pred cCCCeEEccCCCCC--CC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||+.|.+. +. .++.+.+++.+++.+.. .|+. ..+++.++++++.+.++ .+++|++++|++++++
T Consensus 50 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~---~~~~~~~la~~l~~~~~---~~~~v~~~~ggsea~~ 122 (427)
T 3fq8_A 50 DGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGT-SFGA---PCALENVLAEMVNDAVP---SIEMVRFVNSGTEACM 122 (427)
T ss_dssp TSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCS-CCSS---CCHHHHHHHHHHHHHST---TCSEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhhhccCCCCHHHHHHHHHHHHhCC-CcCC---CCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHH
Confidence 46678999998743 33 38999999999987643 2322 35778888888877665 5789999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHHHHHc-CC-------------------EEEEecCcCCCCCccCHHhHhhhccC
Q 012124 169 QAVLAVC--SPGDEVIIPAPFWVSYPEMARIA-DA-------------------TPVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 169 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-g~-------------------~~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
.+++... ..++.|++.+|+|+++...+... |. .++.++. -|++.|++++++
T Consensus 123 ~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~ 195 (427)
T 3fq8_A 123 AVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-------NDLEAVKALFAE 195 (427)
T ss_dssp HHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEET-------TCHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCC-------CCHHHHHHHHHh
Confidence 9985432 24578999999998755432221 11 1222332 188999998864
Q ss_pred ---CceEEEEcCCCCCcccCCC-HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcc
Q 012124 227 ---KSRLLILCSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 302 (470)
Q Consensus 227 ---~~~~i~l~~p~nPtG~~~s-~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~ 302 (470)
++++|+++.++|++|...+ .+++++|.++|++| |++||+||+|.+| +.+.. ....... ....+.||||.
T Consensus 196 ~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DEv~~g~-~~g~~-~~~~~~~----~~~di~t~sK~ 268 (427)
T 3fq8_A 196 NPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEH-DALLVFDEVITGF-RIAYG-GVQEKFG----VTPDLTTLGKI 268 (427)
T ss_dssp STTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHT-TCEEEEECTTTBT-TTBTT-HHHHHTT----CCCSEEEECGG
T ss_pred CCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEecccccc-ccCcc-hhhHhcC----CCCChhhhhhh
Confidence 5667777666778887655 66799999999999 9999999999987 43321 1111111 11125689999
Q ss_pred cccccceeeEEEcCHHHHHHHHHHh---hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC
Q 012124 303 FAMTGWRLGYIAGPKHFVAACNKIQ---SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 379 (470)
Q Consensus 303 ~~~~G~r~G~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 379 (470)
++ +|+|+||+++++++++.+.... ...+++.+++.+.++.++++.... ++..++.++..+..++.+.+.+.++ +
T Consensus 269 ~~-~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-~ 345 (427)
T 3fq8_A 269 IG-GGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ-PGTYEYLDQITKRLSDGLLAIAQET-G 345 (427)
T ss_dssp GG-TTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred hh-CCcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhC-C
Confidence 98 8999999999999988776432 234556799999999988874322 3344444444444444444444333 3
Q ss_pred CeecCCCceEEEeeeccCccCCccc--CCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHH
Q 012124 380 VKMSEPQGAFYLFIDFSTYYGSEAE--GFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERI 457 (470)
Q Consensus 380 ~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l 457 (470)
+....+..|+++|+.+++.....+. .........++++.|+++ ||.+.|+.. .++|+++..+++++++++++|
T Consensus 346 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gi~v~~~~~----~r~~~~~~~t~e~i~~~l~~l 420 (427)
T 3fq8_A 346 HAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQ-GIYLAPSQF----EAGFTSLAHTEEDIDATLAAA 420 (427)
T ss_dssp CCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSSTT----SCEECCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHC-CcEEecCCC----CCEEeeCcCCHHHHHHHHHHH
Confidence 3222334567788887642100000 000000135788888765 999998753 356666666999999999999
Q ss_pred HHHHHh
Q 012124 458 KKGLLT 463 (470)
Q Consensus 458 ~~~l~~ 463 (470)
++++++
T Consensus 421 ~~~l~~ 426 (427)
T 3fq8_A 421 RTVMSA 426 (427)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
No 171
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.97 E-value=2.6e-29 Score=250.03 Aligned_cols=337 Identities=13% Similarity=0.098 Sum_probs=237.4
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcC-CCCCC------CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYT------PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-~~~y~------~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
..+++++.+.|. |+.+++++.+.+.+. ...|+ ......++++.+.+.+.+.+|. +++.|++++| +++
T Consensus 24 ~~~~~~~~~~~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~--~~~~i~~~sG-t~a 97 (405)
T 2vi8_A 24 AKIELIASENFV---SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGA--EHANVQPHSG-AQA 97 (405)
T ss_dssp HSEECCTTCCCC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCCSSH-HHH
T ss_pred cceeeccCcccC---CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCC--CceEEEecCc-HHH
Confidence 356666555443 888999998887532 22221 1122445665455566555664 3444555666 999
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCChHH-H--HHHcC--CEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCc
Q 012124 167 ILQAVLAVCSPGDEVIIPAPFWVSYPE-M--ARIAD--ATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPT 240 (470)
Q Consensus 167 l~~~~~~l~~~gd~Vlv~~p~y~~~~~-~--~~~~g--~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPt 240 (470)
+.+++.+++++||+|++++|+|+.+.. . +...| .+++.+++++ +++.+|++.|++++++ ++++|++ +++|+
T Consensus 98 ~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~v~~-~~~~~- 174 (405)
T 2vi8_A 98 NMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDP-ETHVIDYDDVREKARLHRPKLIVA-AAAAY- 174 (405)
T ss_dssp HHHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCT-TTCSBCHHHHHHHHHHHCCSEEEE-CCSSC-
T ss_pred HHHHHHHhcCCCCEEEEecccccchhcccchhhhccceeEEEeccccc-ccCCcCHHHHHHHHHhcCCeEEEE-eCCCC-
Confidence 999999999999999999999988753 1 12333 4888888753 3467999999999975 7888776 45553
Q ss_pred ccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccc-cccceeeEEEcCHHH
Q 012124 241 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHF 319 (470)
Q Consensus 241 G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~-~~G~r~G~~~~~~~~ 319 (470)
|...+ +++|.++|++| |++||+|++|....+.... .. ..+. ...++++||||.++ .+| ||+++++++
T Consensus 175 ~~~~~---l~~i~~l~~~~-~~~li~Dea~~~g~~~~~~-~~-~~~~---~~di~~~s~sK~~~g~~g---G~~~~~~~~ 242 (405)
T 2vi8_A 175 PRIID---FAKFREIADEV-GAYLMVDMAHIAGLVAAGL-HP-NPVP---YAHFVTTTTHKTLRGPRG---GMILCQEQF 242 (405)
T ss_dssp CSCCC---HHHHHHHHHHH-TCEEEEECTTTHHHHHTTS-SC-CSTT---TCSEEEEESSSTTCCCSC---EEEEECHHH
T ss_pred CccCC---HHHHHHHHHHc-CCEEEEEccccccccccCc-CC-Cccc---cCCEEEEeccccCCCCCC---eEEEEcHHH
Confidence 45555 88999999999 9999999999853332211 11 1121 22388999999996 455 999999999
Q ss_pred HHHHHHHhhhccCCCChHHHHHH-HHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC-CceEEEeeeccC
Q 012124 320 VAACNKIQSQFTSGASSISQKAG-VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFST 397 (470)
Q Consensus 320 ~~~l~~~~~~~~~~~~~~~q~a~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~g~~~~~~~~~ 397 (470)
++.+......+..+++.+.+.++ .++++.. ...++++++++++++++++.+.|+++ |+.+..+ ..++++|+.++.
T Consensus 243 ~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 319 (405)
T 2vi8_A 243 AKQIDKAIFPGIQGGPLMHVIAAKAVAFGEA--LQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDLRP 319 (405)
T ss_dssp HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGG
T ss_pred HHHHHhhhcccccCCCCHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHhC-CCeEecCCCCceEEEEEccC
Confidence 99888766555545534444444 4566531 13578889999999999999999988 8888765 457788999874
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC----CC--CCCcEEEEeec------CHHHHHHHHHHHHHHHHhhC
Q 012124 398 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA----FG--DDTCIRISYAA------SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~----f~--~~~~iRls~~~------~~~~i~~~l~~l~~~l~~~~ 465 (470)
.- .+..++.+.|.+ +||.+.||.. ++ .++++|++++. +++++++++++|++++++.+
T Consensus 320 ~~----------~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 388 (405)
T 2vi8_A 320 QQ----------LTGKTAEKVLDE-VGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG 388 (405)
T ss_dssp GT----------CCHHHHHHHHHH-HTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred CC----------CCHHHHHHHHHH-cCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence 20 156778887755 5999999862 22 35689999984 79999999999999987664
No 172
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.97 E-value=1.7e-30 Score=263.81 Aligned_cols=367 Identities=15% Similarity=0.138 Sum_probs=238.3
Q ss_pred cccccCCchHHHHHHHHHHHHhcCCCeEEccCCCC------CCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHH
Q 012124 70 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP------DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHK 143 (470)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~------~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~ 143 (470)
++..+.++...........+...|.+.+++..|.+ +..+ +.+.+++.+++..+...|++..+..+|+++++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ylD~~~~~~~-~~v~~a~~~~l~~~~~~y~~~~~~~~l~~~la~~ 86 (467)
T 2oqx_A 8 RIRVIEPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGT-GAVTQSMQAAMMRGDEAYSGSRSYYALAESVKNI 86 (467)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHTTSCGGGSCGGGCSEECSCCSSC-SCCCHHHHHHTTSCCCCSSSCHHHHHHHHHHHHH
T ss_pred heeeecccccccHHHHHHHHHHcCCCceeccCCCeeEecccCCCc-HHHHHHHHHHhccCcceeccCchhHHHHHHHHHH
Confidence 34444444443344444455555555555555543 2222 6667777777665556788888899999999998
Q ss_pred HHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCC-----C----CeEEEcCCCCCChHHHHHHcCCEEEEecC----cCC
Q 012124 144 LKEENGLSYTPDQILVSNGAKQSILQAVLAVCSP-----G----DEVIIPAPFWVSYPEMARIADATPVILPT----RIS 210 (470)
Q Consensus 144 l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~-----g----d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~----~~~ 210 (470)
+. .+++++|+|+++|+.++++++.++ | |+|++..+.|..+.......|+.++.... +.+
T Consensus 87 ~~--------~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~ 158 (467)
T 2oqx_A 87 FG--------YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTG 158 (467)
T ss_dssp HC--------CSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTT
T ss_pred hC--------cCcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEecccccccchhhhhccCcceeeccccccccCC
Confidence 72 268999999999999999999888 8 99888744444445566677887765421 111
Q ss_pred ----CCCccCHHhHhhhcc----CCceEEEEcCCCCCc-ccCCCHHHHHHHHHHHHhCCCEEEEEeccccc---------
Q 012124 211 ----ENFLLDPKVLESKLT----EKSRLLILCSPSNPT-GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH--------- 272 (470)
Q Consensus 211 ----~~~~~d~~~l~~~l~----~~~~~i~l~~p~nPt-G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~--------- 272 (470)
.++.+|++.|+++++ +++++|++++||||| |.+++.+++++|+++|++| |++||+|+++..
T Consensus 159 ~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~-gi~li~D~a~~~e~~~~~~~~ 237 (467)
T 2oqx_A 159 VRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKY-DIPVVMDSARFAENAYFIKQR 237 (467)
T ss_dssp SCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHT-TCCEEEECTTHHHHHHHHHHH
T ss_pred CCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHc-CCEEEEEchhhhhhhhhcccc
Confidence 234589999999997 378999999999998 8999999999999999999 999999965432
Q ss_pred -cccCCCCcccccc-cCCCCCceEEEeccCcccccc-cceeeEEEcCHH-HHHHHHHHhhh---c----cCCC-ChHHHH
Q 012124 273 -IIYAPATHTSFAS-LPGMWERTLTVNGFSKAFAMT-GWRLGYIAGPKH-FVAACNKIQSQ---F----TSGA-SSISQK 340 (470)
Q Consensus 273 -~~~~~~~~~~~~~-~~~~~~~~i~i~S~sK~~~~~-G~r~G~~~~~~~-~~~~l~~~~~~---~----~~~~-~~~~q~ 340 (470)
..+.+.....+.. .....+ +++.|+||.++++ | ||++++++ +++.+.+.+.. . ..+. +.....
T Consensus 238 ~~~~~g~~~~~~~~~~~~~~d--~~~~s~sK~~g~~~G---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (467)
T 2oqx_A 238 EAEYKDWTIEQITRETYKYAD--MLAMSAKKDAMVPMG---GLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAME 312 (467)
T ss_dssp CGGGTTSCHHHHHHHHGGGCS--EEEEESSSTTCCSSC---EEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHH
T ss_pred cccccCccHHHHhhhhhccCC--eEEEecccccCCCCc---eEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHH
Confidence 1232221111110 001112 4578999999866 4 78888776 55544443322 1 1111 222222
Q ss_pred HHHHHHhcCCCChHHH-HHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccC---ccCCcccCCCCCCCHHHHH
Q 012124 341 AGVAALGLGYAGGEVV-SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST---YYGSEAEGFGKIENSESLC 416 (470)
Q Consensus 341 a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~l~ 416 (470)
++...+.. ++ ++..+.+.++++.+.+.|+++ |+.+. +.+++++|++++. .... .. .+...++
T Consensus 313 al~~~l~~------~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~--~~----~~~~~l~ 378 (467)
T 2oqx_A 313 RLAVGLYD------GMNLDWLAYRIAQVQYLVDGLEEI-GVVCQ-QAGGHAAFVDAGKLLPHIPA--DQ----FPAQALA 378 (467)
T ss_dssp HHHHHHHH------TTCHHHHHHHHHHHHHHHHHHHHT-TCCEE-EECSSCEEEEHHHHSTTSCG--GG----CHHHHHH
T ss_pred HHHHhhHh------hhhHHHHHHHHHHHHHHHHHHHHC-CCeee-cCCceEEEEechhhcccCCc--cc----ccHHHHH
Confidence 22222221 11 123344567788888999887 88777 7778889998853 1100 00 0145568
Q ss_pred HHHHHcCCEEEECCCCC--C-----------CCCcEEEEee---cCHHHHHHHHHHHHHHHHhhC
Q 012124 417 RYLLDKAQVALVPGDAF--G-----------DDTCIRISYA---ASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 417 ~~L~~~~gI~v~pg~~f--~-----------~~~~iRls~~---~~~~~i~~~l~~l~~~l~~~~ 465 (470)
+.|+++.||.+.|+..| + ..+++|++++ .+++++++++++|++++++.+
T Consensus 379 ~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~~ 443 (467)
T 2oqx_A 379 CELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAA 443 (467)
T ss_dssp HHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 88744559999985432 1 1379999998 689999999999999998654
No 173
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.97 E-value=1.4e-28 Score=242.18 Aligned_cols=312 Identities=16% Similarity=0.154 Sum_probs=231.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh---cCCCCeEEE
Q 012124 107 DTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV---CSPGDEVII 183 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l---~~~gd~Vlv 183 (470)
++|+.+++++.+.+... .|.+.....++++.+++++ |. +++++|+|+++++.+++.++ +++||+|++
T Consensus 10 ~~~~~v~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~----~~----~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~ 79 (375)
T 2fnu_A 10 CLDKEDKKAVLEVLNSK--QLTQGKRSLLFEEALCEFL----GV----KHALVFNSATSALLTLYRNFSEFSADRNEIIT 79 (375)
T ss_dssp CCCHHHHHHHHHHHTSS--CCSSSHHHHHHHHHHHHHH----TC----SEEEEESCHHHHHHHHHHHSSCCCTTSCEEEE
T ss_pred CCCHHHHHHHHHHHHcC--cccCChHHHHHHHHHHHHh----CC----CeEEEeCCHHHHHHHHHHHhcccCCCCCEEEE
Confidence 35788999999988653 2445567788999999987 32 28999999999999999999 899999999
Q ss_pred cCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEE
Q 012124 184 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLL 263 (470)
Q Consensus 184 ~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~ 263 (470)
++|+|+++...++..|++++.++++.++ .+|++.|++++++++++|+++++ ||...+ +++|.++|++| |++
T Consensus 80 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~---l~~i~~l~~~~-~~~ 150 (375)
T 2fnu_A 80 TPISFVATANMLLESGYTPVFAGIKNDG--NIDELALEKLINERTKAIVSVDY---AGKSVE---VESVQKLCKKH-SLS 150 (375)
T ss_dssp CSSSCTHHHHHHHHTTCEEEECCBCTTS--SBCGGGSGGGCCTTEEEEEEECG---GGCCCC---HHHHHHHHHHH-TCE
T ss_pred CCCccHhHHHHHHHCCCEEEEeccCCCC--CCCHHHHHhhcCcCceEEEEeCC---cCCccC---HHHHHHHHHHc-CCE
Confidence 9999999999999999999999997543 58999999999888998887765 999998 78999999999 999
Q ss_pred EEEeccccccccCCCCcccccccCCCCCceEEEeccC--cccccccceeeEEEc-C-HHHHHHHHHHhhhcc--------
Q 012124 264 VLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAG-P-KHFVAACNKIQSQFT-------- 331 (470)
Q Consensus 264 iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~s--K~~~~~G~r~G~~~~-~-~~~~~~l~~~~~~~~-------- 331 (470)
||+|++|+.+.... ...+.. .+ .+++.||| |.++ +| +|++++ + +++++.+........
T Consensus 151 li~D~a~~~~~~~~-----~~~~~~-~~-~i~~~s~s~~K~~~-~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (375)
T 2fnu_A 151 FLSDSSHALGSEYQ-----NKKVGG-FA-LASVFSFHAIKPIT-TA--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEG 220 (375)
T ss_dssp EEEECTTCTTCEET-----TEETTS-SS-SEEEEECCTTSSSC-CS--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCE
T ss_pred EEEECccccCCeEC-----Ceeccc-cC-CeEEEeCCCCCCcc-cc--CceEEEeCCHHHHHHHHHHHhcCCcccccccc
Confidence 99999998643221 011221 12 48888998 9997 46 788877 4 778888876543211
Q ss_pred --------CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC----Cc-eEEEeeeccCc
Q 012124 332 --------SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP----QG-AFYLFIDFSTY 398 (470)
Q Consensus 332 --------~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~----~~-g~~~~~~~~~~ 398 (470)
+..+.+...++... .+++++..++++++++++.+.|++++|+.+..+ .. ++++|+.++..
T Consensus 221 ~~~~~~~~~~~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (375)
T 2fnu_A 221 EVKSIGHNFRLNEIQSALGLSQ-------LKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQK 293 (375)
T ss_dssp EESSCCCBCCCCHHHHHHHHHH-------HTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGG
T ss_pred ccccccccCCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCcc
Confidence 12333332222221 234567778888899999999999888877654 12 34457777632
Q ss_pred cCCcccCCCCCC-CHHHHHHHHHHcCCEEEECCCC-------CC-------C-------CCcEEEEeec--CHHHHHHHH
Q 012124 399 YGSEAEGFGKIE-NSESLCRYLLDKAQVALVPGDA-------FG-------D-------DTCIRISYAA--SLTTLQAAV 454 (470)
Q Consensus 399 ~~~~~~~~~~~~-~~~~l~~~L~~~~gI~v~pg~~-------f~-------~-------~~~iRls~~~--~~~~i~~~l 454 (470)
. . +..++.+.|.++ ||.+..+.. |+ . .+++||+++. +++++++++
T Consensus 294 ~----------~~~~~~l~~~L~~~-gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~ 362 (375)
T 2fnu_A 294 F----------FTCKKLILESLHKR-GILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIA 362 (375)
T ss_dssp G----------GGGHHHHHHHHHHT-TEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHH
T ss_pred c----------cchHHHHHHHHHHC-CCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHH
Confidence 0 0 356788888655 999883211 11 1 1579999986 899999999
Q ss_pred HHHHHHHHhhC
Q 012124 455 ERIKKGLLTLR 465 (470)
Q Consensus 455 ~~l~~~l~~~~ 465 (470)
++|++++++++
T Consensus 363 ~~l~~~~~~~~ 373 (375)
T 2fnu_A 363 HSVLKTFESFK 373 (375)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 99999988764
No 174
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.97 E-value=3.6e-29 Score=248.69 Aligned_cols=323 Identities=12% Similarity=0.042 Sum_probs=224.9
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHc--CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEE-ecChHHHHHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIRE--GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILV-SNGAKQSILQAV 171 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~--~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~i-t~g~~~al~~~~ 171 (470)
..++++.|.. ++|+.+++++.+.... +...+.+ ...++.+.+.+.+.+.+|.+ ++++|++ |+|+++++.+++
T Consensus 40 ~~~~~~~~~~--~~~~~v~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~g~~-~~~~i~~~t~g~t~al~~~~ 114 (398)
T 2fyf_A 40 RDGRFGSGPS--KVRLEQLQTLTTTAAALFGTSHRQA--PVKNLVGRVRSGLAELFSLP-DGYEVILGNGGATAFWDAAA 114 (398)
T ss_dssp SSCBCCSSSC--CCCHHHHHGGGTTTTTTTTSCTTSH--HHHHHHHHHHHHHHHHTTCC-TTCEEEEEETCHHHHHHHHH
T ss_pred CCccccCCCC--CCCHHHHHHHhhcCCCccCcCcCCH--HHHHHHHHHHHHHHHHhCCC-CCceEEEeCCchhHHHHHHH
Confidence 3466665432 4577888887663111 1112212 23345666667776667864 4579998 999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCC-hHHHHHHc--CCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHH
Q 012124 172 LAVCSPGDEVIIPAPFWVS-YPEMARIA--DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNL 248 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~-~~~~~~~~--g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~ 248 (470)
.+++++| .+.+..+.|.. ....+... |++++.++++ +++.++. .+++++++|++++|+||||.+++.++
T Consensus 115 ~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~g~~~~~-----~i~~~~~~v~~~~~~nptG~~~~~~~ 186 (398)
T 2fyf_A 115 FGLIDKR-SLHLTYGEFSAKFASAVSKNPFVGEPIIITSD--PGSAPEP-----QTDPSVDVIAWAHNETSTGVAVAVRR 186 (398)
T ss_dssp HHTCSSC-EEEEECSHHHHHHHHHHHHCTTSCCCEEEECC--TTCCCCC-----CCCTTCSEEEEESEETTTTEECCCCC
T ss_pred HHhcCCC-eEEEeCCHHHHHHHHHHHHhCCCCceEEEecC--CCCCCCc-----cccCCCCEEEEeCcCCCcceecchHH
Confidence 9999887 22232222211 12234555 8888888886 2333332 25678999999999999999999665
Q ss_pred HHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh-
Q 012124 249 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ- 327 (470)
Q Consensus 249 ~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~- 327 (470)
+.++ + |++||+|++|+.+... ..+. +..+++.|+||.++.+| ++||+++++++++.+.+..
T Consensus 187 i~~~------~-~~~vivD~a~~~~~~~----~~~~------~~di~~~s~sK~~~~~g-g~g~l~~~~~~~~~l~~~~~ 248 (398)
T 2fyf_A 187 PEGS------D-DALVVIDATSGAGGLP----VDIA------ETDAYYFAPQKNFASDG-GLWLAIMSPAALSRIEAIAA 248 (398)
T ss_dssp CTTC------C--CEEEEECTTTTTTSC----CCGG------GCSEEEECTTSTTCSCS-SEEEEEECHHHHHHHHHHHH
T ss_pred hhhh------c-CCeEEEEeccccCCcc----cCcc------cCcEEEEecCcccCCCC-ceEEEEECHHHHHHhhcccc
Confidence 5543 8 9999999999864321 1111 24488999999998664 6999999999988775431
Q ss_pred --------------------hhccCCCChHHHHHHHHHHhcCCCChHH--HHHHHHHHHHHHHHHHHHhccCCCCeecC-
Q 012124 328 --------------------SQFTSGASSISQKAGVAALGLGYAGGEV--VSKMVKAFRERRDFLVKSFGELEGVKMSE- 384 (470)
Q Consensus 328 --------------------~~~~~~~~~~~q~a~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~g~~~~~- 384 (470)
.....+++...+.++..+++. ..+. +++++++++++++++.+.|++++|+++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 325 (398)
T 2fyf_A 249 TGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDW---LVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVT 325 (398)
T ss_dssp TTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH---HHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCC
T ss_pred cCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHH---HHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccC
Confidence 112234566667777777764 1333 78889999999999999999888888763
Q ss_pred -C--CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 012124 385 -P--QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKK 459 (470)
Q Consensus 385 -~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~ 459 (470)
| .+++++|+++|+.. +..++.+.|.++ ||.+.+|.....++++|++++. +++++++++++|++
T Consensus 326 ~~~~~~~~~~~~~~~~~~-----------~~~~l~~~L~~~-gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 393 (398)
T 2fyf_A 326 DPGLRSQVVGTIDFVDDV-----------DAGTVAKILRAN-GIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDW 393 (398)
T ss_dssp SGGGBCSSEEEEEECTTS-----------CHHHHHHHHHHT-TCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ChhhcCCcEEEEECCCCC-----------CHHHHHHHHHHC-CcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4 35657899987542 678899988877 9999987432235789999995 89999999999999
Q ss_pred HHHh
Q 012124 460 GLLT 463 (470)
Q Consensus 460 ~l~~ 463 (470)
++++
T Consensus 394 ~l~~ 397 (398)
T 2fyf_A 394 VVER 397 (398)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8875
No 175
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.97 E-value=1.1e-29 Score=255.23 Aligned_cols=340 Identities=16% Similarity=0.160 Sum_probs=228.3
Q ss_pred cCCCeEEccCCCCC--CC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||+.|.+. +. .++.+.+++.+++.+.. .| .+..++++.+++.+.+..+ ..++|++++|+++++.
T Consensus 54 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~-~~---~~~~~~~~~l~~~la~~~~---~~~~v~~~~sgseA~~ 126 (434)
T 2epj_A 54 DGARIVDLVLAYGPLILGHKHPRVLEAVEEALARGW-LY---GAPGEAEVLLAEKILGYVK---RGGMIRFVNSGTEATM 126 (434)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCS-CC---SSCCHHHHHHHHHHHHHHC---TTCEEEEESSHHHHHH
T ss_pred CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhCC-CC---CCCCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHH
Confidence 45678999988642 33 47899999999987642 22 1234566667777766553 4689999999999999
Q ss_pred HHHHH---hcCCCCeEEEcCCCCCChHHHHH-H-------------cCC------EEEEecCcCCCCCccCHHhHhhhcc
Q 012124 169 QAVLA---VCSPGDEVIIPAPFWVSYPEMAR-I-------------ADA------TPVILPTRISENFLLDPKVLESKLT 225 (470)
Q Consensus 169 ~~~~~---l~~~gd~Vlv~~p~y~~~~~~~~-~-------------~g~------~~~~v~~~~~~~~~~d~~~l~~~l~ 225 (470)
.+++. +. +++.|++.+|+|+++...+. . .|. +++.++. .|++.|+++++
T Consensus 127 ~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~ 198 (434)
T 2epj_A 127 TAIRLARGYT-GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVEALERVFA 198 (434)
T ss_dssp HHHHHHHHHH-CCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-------TCHHHHHHHHH
T ss_pred HHHHHHHHhh-CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-------CCHHHHHHHHH
Confidence 99987 44 56788888899998654221 1 232 2445553 38899999886
Q ss_pred C---CceEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCc
Q 012124 226 E---KSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 301 (470)
Q Consensus 226 ~---~~~~i~l~~p~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK 301 (470)
+ ++++|+++..+||||.++ +.+++++|.++|++| |++||+||+|.++.+ +. ...+..+.- ...+.||||
T Consensus 199 ~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~~~-g~-~~~~~~~~~----~~di~s~sK 271 (434)
T 2epj_A 199 EYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRES-GALLILDEVVTGFRL-GL-EGAQGYFNI----EGDIIVLGK 271 (434)
T ss_dssp HHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHH-TCEEEEEETTTTTTS-ST-THHHHHHTC----CCSEEEEEG
T ss_pred hCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHc-CCEEEEEcchhceeC-Cc-chhhHHhCC----CCCeeeecc
Confidence 3 556655554567899866 799999999999999 999999999998733 22 111111111 111458999
Q ss_pred ccccccceeeEEEcCHHHHHHHHHHh---hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC-
Q 012124 302 AFAMTGWRLGYIAGPKHFVAACNKIQ---SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL- 377 (470)
Q Consensus 302 ~~~~~G~r~G~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 377 (470)
.++ +|+|+||+++++++++.+.... ...+++.+++.+.++.++|+.. ++ +++.++++++++++.+.|+++
T Consensus 272 ~l~-~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~---~~--~~~~~~~~~~~~~l~~~L~~~~ 345 (434)
T 2epj_A 272 IIG-GGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKAL---EE--EPVYSVSREAAKALEEAASEVL 345 (434)
T ss_dssp GGG-TTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHH---HH--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhc-CCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHH---Hh--cCHHHHHHHHHHHHHHHHHHHH
Confidence 998 6999999999999887765421 2245578899998888887641 11 334555666666666666553
Q ss_pred --CCCeecCCCceEEEeeeccCc-cCC-cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHH
Q 012124 378 --EGVKMSEPQGAFYLFIDFSTY-YGS-EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAA 453 (470)
Q Consensus 378 --~g~~~~~~~~g~~~~~~~~~~-~~~-~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~ 453 (470)
.++....+..|.++|+.+++. ... .........+..++++.|+++ ||.+.||.. .++|+++..++++++++
T Consensus 346 ~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~----~~~~~~~~~t~e~i~~~ 420 (434)
T 2epj_A 346 DRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRR-GVFIAPSNL----EAVFTGLPHQGEALEIA 420 (434)
T ss_dssp HHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHT-TEECCSSTT----SCEECCTTCSHHHHHHH
T ss_pred hhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHC-CeEEeccCC----CcEEEeccCCHHHHHHH
Confidence 133222223455688888641 000 000000000246788888765 999999752 35788876799999999
Q ss_pred HHHHHHHHHhh
Q 012124 454 VERIKKGLLTL 464 (470)
Q Consensus 454 l~~l~~~l~~~ 464 (470)
+++|+++++++
T Consensus 421 l~~l~~~l~~~ 431 (434)
T 2epj_A 421 VEGLRSSLKTV 431 (434)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998865
No 176
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.97 E-value=4.5e-29 Score=249.53 Aligned_cols=333 Identities=15% Similarity=0.071 Sum_probs=221.3
Q ss_pred EEccCCCCCCCChHHHHHHHHHHHHcCC-------CCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHH
Q 012124 97 IRLAAGEPDFDTPVLIAEAGINAIREGF-------TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQ 169 (470)
Q Consensus 97 i~l~~g~~~~~~~~~~~~a~~~~~~~~~-------~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~ 169 (470)
+.+..+... +++.+.+++.+++.+.. ..|........+.+...+++.+.+|. ++++|++++| ++++..
T Consensus 33 ~~~~~~~n~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~v~~~sG-s~a~~~ 107 (420)
T 3gbx_A 33 IELIASENY--TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGA--DYANVQPHSG-SQANFA 107 (420)
T ss_dssp EECCTTCCC--CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTC--SEEECCCSSH-HHHHHH
T ss_pred eeeeccCCC--CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCC--CCceeEecCc-HHHHHH
Confidence 555544332 58889999988874422 12222233345555555667666674 5667767776 779999
Q ss_pred HHHHhcCCCCeEEEcCCCCCChH---HHHHH--cCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccC
Q 012124 170 AVLAVCSPGDEVIIPAPFWVSYP---EMARI--ADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSV 243 (470)
Q Consensus 170 ~~~~l~~~gd~Vlv~~p~y~~~~---~~~~~--~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~ 243 (470)
++.+++++||+|++++|+|+.+. ..... .+...++++.+ .++.+|++.|++++++ ++++|++++|+||+ .
T Consensus 108 a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~--~ 183 (420)
T 3gbx_A 108 VYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGID--ESGKIDYDEMAKLAKEHKPKMIIGGFSAYSG--V 183 (420)
T ss_dssp HHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEEC--TTCSCCHHHHHHHHHHHCCSEEEECCTTCCS--C
T ss_pred HHHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCC--ccCCcCHHHHHHHHHhcCCeEEEEecCccCC--c
Confidence 99999999999999999998743 22222 34555666665 4556899999999976 68999998899874 5
Q ss_pred CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH---HHH
Q 012124 244 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK---HFV 320 (470)
Q Consensus 244 ~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~---~~~ 320 (470)
.+ +++|.++|++| |++||+||+|....+.....+.. + ....+++.|+||.++ |.+.||+++++ ++.
T Consensus 184 ~~---l~~l~~l~~~~-~~~li~De~~~~~~~~~~~~~~~--~---~~~di~~~s~sK~~~--g~~gg~~~~~~~~~~~~ 252 (420)
T 3gbx_A 184 VD---WAKMREIADSI-GAYLFVDMAHVAGLIAAGVYPNP--V---PHAHVVTTTTHKTLA--GPRGGLILAKGGDEELY 252 (420)
T ss_dssp CC---HHHHHHHHHHT-TCEEEEECTTTHHHHHTTSSCCS--T---TTSSEEEEESSGGGC--SCSCEEEEESSCCHHHH
T ss_pred cC---HHHHHHHHHHc-CCEEEEECCcchhceecccCCcc--c---ccCCEEEeecccCCC--CCCceEEEEcCCcHHHH
Confidence 56 88999999999 99999999976433222111111 1 124589999999984 55569999987 777
Q ss_pred HHHHHHhhhccC-CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC-CceEEEeeeccCc
Q 012124 321 AACNKIQSQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFSTY 398 (470)
Q Consensus 321 ~~l~~~~~~~~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~g~~~~~~~~~~ 398 (470)
+.+......... +++...+.++..++... ..+++++++++++++++.+.+.|.+. |+.+..+ ..+.++|+.++..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~ 329 (420)
T 3gbx_A 253 KKLNSAVFPSAQGGPLMHVIAGKAVALKEA--MEPEFKVYQQQVAKNAKAMVEVFLNR-GYKVVSGGTENHLFLLDLVDK 329 (420)
T ss_dssp HHHHHHHC----CCCCHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGG
T ss_pred HHhhhhcCCCCCCCcchhHHHHHHHHHHHH--HhHhHHHHHHHHHHHHHHHHHHHHhc-CCeeccCCCCCeEEEEEcCCC
Confidence 777665433322 33444444444444331 25677888999999999999999885 8887653 4566688887642
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEEC-------CCCCCCCCcEEEEeec------CHHHHHHHHHHHHHHHHhh
Q 012124 399 YGSEAEGFGKIENSESLCRYLLDKAQVALVP-------GDAFGDDTCIRISYAA------SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~p-------g~~f~~~~~iRls~~~------~~~~i~~~l~~l~~~l~~~ 464 (470)
. .+...+.+.| +++||.+.| |..|+ ++.+|+++.. ++++++++++.|++++++.
T Consensus 330 ~----------~~~~~~~~~l-~~~gi~v~~~~~~~~~~~~~~-~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 396 (420)
T 3gbx_A 330 N----------LTGKEADAAL-GRANITVNKNSVPNDPKSPFV-TSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNI 396 (420)
T ss_dssp T----------CCHHHHHHHH-HHTTEECEEECCTTCSSCTTT-CSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred C----------CCHHHHHHHH-HHCCcEeccccCCCCccccCC-CcceEEecchhcccCCCHHHHHHHHHHHHHHHhCc
Confidence 1 1456666665 456999998 44443 3459999873 4789999999999988754
No 177
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.97 E-value=6.3e-29 Score=252.53 Aligned_cols=338 Identities=15% Similarity=0.131 Sum_probs=243.6
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCC-C------CCCCcCcHHHHHHHHHHHHHHcCCCCCC--CcEEEecChH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFT-R------YTPNAGTLELRSAICHKLKEENGLSYTP--DQILVSNGAK 164 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~-~------y~~~~g~~~lr~~ia~~l~~~~g~~~~~--~~i~it~g~~ 164 (470)
++.|+|..+.+ .+++.+++++.+.+.+... + |+...+..++++.+.+++.+.+|.+.+. .+|++++|+
T Consensus 44 ~~~i~L~a~e~--~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs- 120 (483)
T 1rv3_A 44 RVGLELIASEN--FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS- 120 (483)
T ss_dssp HSSEECCTTCC--CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-
T ss_pred hcCeEEEcCCC--CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-
Confidence 35689987765 3588899999888765321 2 3333455788889999999989965322 348888888
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCCCChHHH--------HHHcC--CEEEEecCcCCCCCccCHHhHhhhcc-CCceEEEE
Q 012124 165 QSILQAVLAVCSPGDEVIIPAPFWVSYPEM--------ARIAD--ATPVILPTRISENFLLDPKVLESKLT-EKSRLLIL 233 (470)
Q Consensus 165 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~--------~~~~g--~~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l 233 (470)
+++..++.++++|||+|++.+|.|.++... +...| .+.+++++++ +++.+|+|.|+++++ +++|+|++
T Consensus 121 ~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~-~~~~iD~d~le~~i~~~~tklIi~ 199 (483)
T 1rv3_A 121 PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNP-DTGYIDYDRLEENARLFHPKLIIA 199 (483)
T ss_dssp HHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCT-TTCSBCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECcccc-CCCcCCHHHHHHHHhhcCCcEEEE
Confidence 888888899999999999999998877532 23344 5666666654 346799999999997 78999998
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEecccc-ccccCCCCcccccccCCCCCceEEEeccCcccccccceeeE
Q 012124 234 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 312 (470)
Q Consensus 234 ~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~-~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~ 312 (470)
+++||+ .+++ +++|.++|+++ |++||+|++|. ++.+.+....++. ...+++.|++|++ .|+|.||
T Consensus 200 -~~sn~~-~~~d---l~~i~~ia~~~-g~~livD~ah~~g~~~~~~~~~p~~------~~div~~s~~K~l--~GprgG~ 265 (483)
T 1rv3_A 200 -GTSCYS-RNLD---YGRLRKIADEN-GAYLMADMAHISGLVVAGVVPSPFE------HCHVVTTTTHKTL--RGCRAGM 265 (483)
T ss_dssp -CCSSCC-SCCC---HHHHHHHHHHT-TCEEEEECTTTHHHHHHTSSCCGGG------TCSEEEEESSGGG--CCCSCEE
T ss_pred -eCCcCC-CcCC---HHHHHHHHHHc-CCEEEEEccchhcccccCCCCCCCC------CCcEEEecCcccC--CCCCceE
Confidence 889988 8888 88999999999 99999999976 3333322112221 2348899999987 6788999
Q ss_pred EEcCHH---------------HHHHHHHHhhhc-cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 012124 313 IAGPKH---------------FVAACNKIQSQF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 376 (470)
Q Consensus 313 ~~~~~~---------------~~~~l~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 376 (470)
++++++ +.+.+....... ..+++...+.++..++... ...++++..+++.++++++.+.|.+
T Consensus 266 i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~ 343 (483)
T 1rv3_A 266 IFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQA--MTPEFKEYQRQVVANCRALSAALVE 343 (483)
T ss_dssp EEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHH--hChhHHHHHHHHHHHHHHHHHHHHh
Confidence 998874 344444332222 2234444445555556532 1346788889999999999999998
Q ss_pred CCCCeecCCC-ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEE----CCCCCC-CCCcEEEEeec--C--
Q 012124 377 LEGVKMSEPQ-GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV----PGDAFG-DDTCIRISYAA--S-- 446 (470)
Q Consensus 377 ~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~----pg~~f~-~~~~iRls~~~--~-- 446 (470)
+ |+++..+. .++++|++++.. + .+..++.+.| ++.||.+. ||..+. .++++||+++. +
T Consensus 344 ~-g~~~~~~~~~~~~~~v~~~~~-g---------~~~~~~~~~L-~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g 411 (483)
T 1rv3_A 344 L-GYKIVTGGSDNHLILVDLRSK-G---------TDGGRAEKVL-EACSIACNKNTCPGDKSALRPSGLRLGTPALTSRG 411 (483)
T ss_dssp T-TCEEGGGSCSSSEEEEEGGGG-T---------CCHHHHHHHH-HHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTT
T ss_pred c-CCEeccCCCCCceEEEeccCC-C---------CCHHHHHHHH-HhCCcEEecCCCCCCCcCCCCceEEeecCCcccCC
Confidence 8 88887653 346678888532 0 1566776655 55699999 886321 35799999986 5
Q ss_pred --HHHHHHHHHHHHHHHHh
Q 012124 447 --LTTLQAAVERIKKGLLT 463 (470)
Q Consensus 447 --~~~i~~~l~~l~~~l~~ 463 (470)
+++++++++.|+++++.
T Consensus 412 ~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 412 LLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 89999999999998875
No 178
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.97 E-value=1.8e-29 Score=254.66 Aligned_cols=337 Identities=10% Similarity=0.096 Sum_probs=233.7
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHH-H-HHHH---HHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecCh
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIA-E-AGIN---AIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 163 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~-~-a~~~---~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~ 163 (470)
+|+.++||+.|.+ ++.. ++.+. + ++.+ ++.... .|+ ..+..+.+..+++.+.+..+ ...+++|++|+|+
T Consensus 52 ~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~-~~~-~~~~~~~~~~la~~la~~~~-~~~~~~v~~~~~g 128 (449)
T 2cjg_A 52 TGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNK-PSN-SDVYSVAMARFVETFARVLG-DPALPHLFFVEGG 128 (449)
T ss_dssp TCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCC-CCT-TTCCCHHHHHHHHHHHHHHC-CTTCCEEEEESSH
T ss_pred CCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcC-CCC-cccCCHHHHHHHHHHHHhcC-CCCCCEEEEeCch
Confidence 4567899977763 3443 78899 8 9999 776542 343 23444566666666666665 2467899999999
Q ss_pred HHHHHHHHHHhc---C----------C-CCeEEEcCCCCCChHHHHHH-cC--------C-----EEEEecCcCCCCC--
Q 012124 164 KQSILQAVLAVC---S----------P-GDEVIIPAPFWVSYPEMARI-AD--------A-----TPVILPTRISENF-- 213 (470)
Q Consensus 164 ~~al~~~~~~l~---~----------~-gd~Vlv~~p~y~~~~~~~~~-~g--------~-----~~~~v~~~~~~~~-- 213 (470)
+++++.+++.+. . + ||+|++.+|+|+++...... .| . +++.+|.+..+..
T Consensus 129 seA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 208 (449)
T 2cjg_A 129 ALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEP 208 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHH
T ss_pred HHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhcc
Confidence 999999987543 2 2 89999999999986543221 22 2 5566665421011
Q ss_pred ------ccCHHhHhhhcc---CCceEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccc
Q 012124 214 ------LLDPKVLESKLT---EKSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 283 (470)
Q Consensus 214 ------~~d~~~l~~~l~---~~~~~i~l~~p~nPtG-~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~ 283 (470)
..+++.|+++++ +++++|+++..+|||| ..++.+++++|.++|++| |+++|+||+|.++.+.+.. ..+
T Consensus 209 ~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-g~lli~DEv~~g~g~~g~~-~~~ 286 (449)
T 2cjg_A 209 AMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEF-DALLIFDEVQTGCGLTGTA-WAY 286 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-STH
T ss_pred ccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHC-CcEEEEeccccCCCccCcc-eee
Confidence 245667888884 5677766665589999 599999999999999999 9999999999987655431 111
Q ss_pred cccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHH-----HHhhhccCCCChHHHHHHHHHHhcCCCChHHHHH
Q 012124 284 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN-----KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 358 (470)
Q Consensus 284 ~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~-----~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~ 358 (470)
..+.- ... +.||||.+ |+||+++++++++.+. ......+++.+++.|.++.++|+.. .+ +.
T Consensus 287 ~~~~~-~~d---i~t~sK~l-----~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~---~~--~~ 352 (449)
T 2cjg_A 287 QQLDV-APD---IVAFGKKT-----QVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVI---EA--EG 352 (449)
T ss_dssp HHHTC-CCS---EEEECGGG-----SSEEEEECGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHH---HH--HT
T ss_pred cccCC-Cce---EEEecCcc-----cEEEEEECHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHH---Hh--cc
Confidence 11111 112 34799987 7999999998887522 2233356778999999999888741 11 34
Q ss_pred HHHHHHHHHHHHHHHhcc----CCC-CeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC
Q 012124 359 MVKAFRERRDFLVKSFGE----LEG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 433 (470)
Q Consensus 359 ~~~~~~~~~~~l~~~L~~----~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f 433 (470)
+.++++++++++.+.|++ ++. +....+.+.| ++++++... +..++++.|+++ ||.+.|+.
T Consensus 353 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~-~~~~~~~~~-----------~~~~~~~~l~~~-Gv~v~~~g-- 417 (449)
T 2cjg_A 353 LFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLM-CAFSLPTTA-----------DRDELIRQLWQR-AVIVLPAG-- 417 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTE-EEEECSSHH-----------HHHHHHHHHHHT-TEECEEET--
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEE-EEEEECChH-----------HHHHHHHHHHHC-CeEEecCC--
Confidence 556667777777777764 344 5444455444 667886421 456788888865 99999963
Q ss_pred CCCCcEEEEee--cCHHHHHHHHHHHHHHHHhh
Q 012124 434 GDDTCIRISYA--ASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 434 ~~~~~iRls~~--~~~~~i~~~l~~l~~~l~~~ 464 (470)
.+++|++++ .+++++++++++|+++++++
T Consensus 418 --~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 418 --ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp --TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 579999765 49999999999999998764
No 179
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.96 E-value=2.4e-28 Score=242.12 Aligned_cols=319 Identities=16% Similarity=0.221 Sum_probs=228.6
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCC-CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYT-PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~-~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
+++++..+.|.+ ++.+.+++.+.+..+ .|. +..+..+||+++++++. .+++++++|+++++.+++.+
T Consensus 23 ~~~~l~~~~p~~--~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~la~~~~--------~~~~i~~~~gt~al~~~l~~ 90 (391)
T 3dr4_A 23 DLPRISVAAPRL--DGNERDYVLECMDTT--WISSVGRFIVEFEKAFADYCG--------VKHAIACNNGTTALHLALVA 90 (391)
T ss_dssp -----CCCCCCC--CSSHHHHHHHHHHHT--CCSSCSHHHHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHH
T ss_pred CCceeccCCCCC--CHHHHHHHHHHHHcC--CccCCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHH
Confidence 568888888865 467778888877654 354 67889999999999973 23788899999999999999
Q ss_pred h-cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHH
Q 012124 174 V-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 252 (470)
Q Consensus 174 l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l 252 (470)
+ +++||+|++++|+|+++...++..|++++.++++++ ++.+|++.|++++++++++|+ ++||||...+ +++|
T Consensus 91 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~~~~~~~~v~---~~n~tG~~~~---~~~i 163 (391)
T 3dr4_A 91 MGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPR-TFNLDAAKLEALITPRTKAIM---PVHLYGQICD---MDPI 163 (391)
T ss_dssp HTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTT-TCSBCGGGSGGGCCTTEEEEC---CBCGGGCCCC---HHHH
T ss_pred cCCCCcCEEEECCCchHHHHHHHHHCCCEEEEEecCcc-ccCcCHHHHHHhcCCCceEEE---EECCCCChhh---HHHH
Confidence 9 899999999999999999999999999999999753 467999999999998888877 5689999988 8889
Q ss_pred HHHHHhCCCEEEEEeccccccc-cCCCCcccccccCCCCCceEEEeccC--cccccccceeeEEEcC-HHHHHHHHHHhh
Q 012124 253 ARIVAKHPRLLVLSDEIYEHII-YAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAGP-KHFVAACNKIQS 328 (470)
Q Consensus 253 ~~~~~~~~~~~iI~Dd~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~S~s--K~~~~~G~r~G~~~~~-~~~~~~l~~~~~ 328 (470)
.++|+++ |++||+|++|+... +.+. ....+. .+.+.||| |.++ |.+.||++++ +++.+.+.....
T Consensus 164 ~~l~~~~-~~~li~D~a~~~g~~~~~~---~~~~~~-----di~~~S~s~~K~l~--~g~gg~~~~~~~~~~~~~~~~~~ 232 (391)
T 3dr4_A 164 LEVARRH-NLLVIEDAAEAVGATYRGK---KSGSLG-----DCATFSFFGNAIIT--TGEGGMITTNDDDLAAKMRLLRG 232 (391)
T ss_dssp HHHHHHT-TCEEEEECTTCTTCEETTE---ETTSSS-----SEEEEECBTTSSSC--CBSCEEEEESCHHHHHHHHHHHB
T ss_pred HHHHHHc-CCEEEEECcccccceECCe---eecccC-----CEEEEECCCCCcCC--cCCeEEEEECCHHHHHHHHHHHh
Confidence 9999999 99999999998532 2221 111111 26777776 7764 4578998876 557777766543
Q ss_pred hcc--------------CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC------Cce
Q 012124 329 QFT--------------SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP------QGA 388 (470)
Q Consensus 329 ~~~--------------~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~------~~g 388 (470)
... +..+.+.. +..... .+.+++..++.++..+.+.+.|.++ |+.+..+ ..+
T Consensus 233 ~g~~~~~~~~~~~~g~~~~~~~l~a--a~~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~ 304 (391)
T 3dr4_A 233 QGMDPNRRYWFPIVGFNYRMTNIQA--AIGLAQ-----LERVDEHLAARERVVGWYEQKLARL-GNRVTKPHVALTGRHV 304 (391)
T ss_dssp TTCCTTSTTCCSSCCCBCBCCHHHH--HHHHHH-----HHTHHHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTTSCCC
T ss_pred cCCCCCCcccccccccccCCCHHHH--HHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCCCcce
Confidence 221 22233322 222222 2334556666777788888888888 7766544 123
Q ss_pred -EEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC---C-----------------CCCcEEEEeec--
Q 012124 389 -FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF---G-----------------DDTCIRISYAA-- 445 (470)
Q Consensus 389 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f---~-----------------~~~~iRls~~~-- 445 (470)
+.+++.+++.. ..+..++.+.|.++ ||.+.+|... . ....+||++..
T Consensus 305 ~~~~~i~~~~~~---------~~~~~~l~~~L~~~-GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~ 374 (391)
T 3dr4_A 305 FWMYTVRLGEGL---------STTRDQVIKDLDAL-GIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGL 374 (391)
T ss_dssp CSSEEEEECSSC---------SSCHHHHHHHHHHT-TCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTC
T ss_pred eEEEEEEECCcc---------chhHHHHHHHHHHC-CCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCC
Confidence 22466666410 01678899988766 9999987511 0 02469999886
Q ss_pred CHHHHHHHHHHHHHHH
Q 012124 446 SLTTLQAAVERIKKGL 461 (470)
Q Consensus 446 ~~~~i~~~l~~l~~~l 461 (470)
++++++.+++.|++++
T Consensus 375 t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 375 TEADIDRVIAALDQVL 390 (391)
T ss_dssp CHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988654
No 180
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.96 E-value=3.8e-29 Score=250.63 Aligned_cols=335 Identities=14% Similarity=0.128 Sum_probs=225.5
Q ss_pred cCCCeEEccCCCC--CCC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||+.|.+ .+. .++.+.+++.+++.+.. .|+ +..++++.+++++.+.++ .+++|++++|+++++.
T Consensus 50 ~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~ea~~ 122 (424)
T 2e7u_A 50 DGNRYLDYVMSWGPLILGHAHPKVLARVRETLERGL-TFG---APSPLEVALAKKVKRAYP---FVDLVRFVNSGTEATM 122 (424)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCS-CCS---SCCHHHHHHHHHHHHHCT---TCCEEEEESSHHHHHH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhCC-CCC---CCCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHH
Confidence 4667899998863 233 47899999999987642 232 345778888888877654 5689999999999999
Q ss_pred HHHHH---hcCCCCeEEEcCCCCCChHHHHH-H-------------cCC------EEEEecCcCCCCCccCHHhHhhhcc
Q 012124 169 QAVLA---VCSPGDEVIIPAPFWVSYPEMAR-I-------------ADA------TPVILPTRISENFLLDPKVLESKLT 225 (470)
Q Consensus 169 ~~~~~---l~~~gd~Vlv~~p~y~~~~~~~~-~-------------~g~------~~~~v~~~~~~~~~~d~~~l~~~l~ 225 (470)
.+++. +. +++.|++.+|+|+++...+. . .|. +++.+|. .|++.|+++++
T Consensus 123 ~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~ 194 (424)
T 2e7u_A 123 SALRLARGYT-GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPEGLREVLK 194 (424)
T ss_dssp HHHHHHHHHH-CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHHHHHHHHH
T ss_pred HHHHHHHHhh-CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-------CCHHHHHHHHH
Confidence 99886 44 45788899999998654322 1 122 3444543 38899999886
Q ss_pred ---CCceEEEEcCCCC-CcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccC
Q 012124 226 ---EKSRLLILCSPSN-PTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 300 (470)
Q Consensus 226 ---~~~~~i~l~~p~n-PtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~s 300 (470)
++++ +++++|+| +||..+ +.+++++|.++ ++| |++||+||+|.++.+ +. ...+..+.- ... +.|||
T Consensus 195 ~~~~~~~-~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~-g~~lI~DEv~~g~~~-g~-~~~~~~~~~-~~d---i~s~s 265 (424)
T 2e7u_A 195 RRGEEIA-AIIFEPVVGNAGVLVPTEDFLKALHEA-KAY-GVLLIADEVMTGFRL-AF-GGATELLGL-KPD---LVTLG 265 (424)
T ss_dssp HHGGGEE-EEEECSSBCTTSCBCCCHHHHHHHHHG-GGG-TCEEEEECTTTTTTS-ST-THHHHHHTC-CCS---EEEEC
T ss_pred hCCCCEE-EEEEeCCCCCCCCcCCCHHHHHHHHHH-HHc-CCEEEEecCcccccc-ch-hHHHHHhCC-Ccc---hhhhh
Confidence 3444 44556654 599765 79999999999 999 999999999998733 32 111111111 111 34999
Q ss_pred cccccccceeeEEEcCHHHHHHHHHHh---hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC
Q 012124 301 KAFAMTGWRLGYIAGPKHFVAACNKIQ---SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL 377 (470)
Q Consensus 301 K~~~~~G~r~G~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 377 (470)
|.++ +|+|+||+++++++++.+.... ...+++.+++.+.++.++|+.. ++ .+++.++++++++++.+.|+++
T Consensus 266 K~l~-~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~---~~-~~~~~~~~~~~~~~l~~~L~~~ 340 (424)
T 2e7u_A 266 KILG-GGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELL---EE-NPGYYAYLEDLGARLEAGLKEV 340 (424)
T ss_dssp GGGG-TTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHH---HH-CTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhh-CCcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHH---Hh-ccHHHHHHHHHHHHHHHHHHHH
Confidence 9998 7999999999999888765421 2235578899999888888641 11 1345566666677777666653
Q ss_pred ---CCCeecCCCceEEEeeeccCccCCccc--CCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHH
Q 012124 378 ---EGVKMSEPQGAFYLFIDFSTYYGSEAE--GFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQA 452 (470)
Q Consensus 378 ---~g~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~ 452 (470)
.++....+..|.++|+++++....... ......+..++++.|++ +||.+.||.. .++|+++..+++++++
T Consensus 341 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~----~~~~~~~~~t~~~i~~ 415 (424)
T 2e7u_A 341 LKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLD-RGIYWPPSNF----EAAFLSVAHREEDVEK 415 (424)
T ss_dssp HHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHT-TTEECCSSSS----SCEECCTTCCHHHHHH
T ss_pred HHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHH-CCeEEeccCC----CceEeeccCCHHHHHH
Confidence 133221123455688888641000000 00000024578888875 5999999752 3578887679999999
Q ss_pred HHHHHHHH
Q 012124 453 AVERIKKG 460 (470)
Q Consensus 453 ~l~~l~~~ 460 (470)
++++|+++
T Consensus 416 ~l~~l~~~ 423 (424)
T 2e7u_A 416 TLEALRKA 423 (424)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999875
No 181
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.96 E-value=6.8e-29 Score=249.15 Aligned_cols=347 Identities=14% Similarity=0.117 Sum_probs=218.7
Q ss_pred cCCCeEEccCCCCC--CC-ChHHHHHHHHHHHHcCCC-CCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 92 AGVSVIRLAAGEPD--FD-TPVLIAEAGINAIREGFT-RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~-~~~~~~~a~~~~~~~~~~-~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
+|+.++|++.|... +. .++.+.+++.+++.+... .| +. +....+++.+.+..+ .+++|++++|+++++
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~-~~----~~~~~la~~l~~~~~---~~~~v~~~~sGsea~ 122 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGA-PT----EMEVKMAQLVTDLVP---TMDMVRMVNSGTEAT 122 (429)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSS-CC----HHHHHHHHHHHHHST---TCSEEEEESSHHHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcccCC-CC----HHHHHHHHHHHhhCC---CCCEEEEeCcHHHHH
Confidence 57789999988743 33 378999999999876432 23 33 455555555555444 468999999999999
Q ss_pred HHHHHHhc--CCCCeEEEcCCCCCChHHHHH-HcC--CEEEEecCcCCCCC------------ccCHHhHhhhccC--Cc
Q 012124 168 LQAVLAVC--SPGDEVIIPAPFWVSYPEMAR-IAD--ATPVILPTRISENF------------LLDPKVLESKLTE--KS 228 (470)
Q Consensus 168 ~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~-~~g--~~~~~v~~~~~~~~------------~~d~~~l~~~l~~--~~ 228 (470)
+.+++... ..++.|++.+++|++....+. ..| ......+.. .+. ..|++.|++++++ +.
T Consensus 123 ~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 200 (429)
T 4e77_A 123 MSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNS--PGVPTDFAKHTLTCTYNDLASVRQAFEQYPQE 200 (429)
T ss_dssp HHHHHHHHHHHCCCEEEEETTCCCC------------------CCC--TTSCGGGGTTEEEECTTCHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCc--CCCCCccCCceeecCCCCHHHHHHHHHhcCCC
Confidence 99998543 356889999999998765221 111 111111110 000 0188999998863 23
Q ss_pred eEEEEcCCCCCc-cc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccc
Q 012124 229 RLLILCSPSNPT-GS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306 (470)
Q Consensus 229 ~~i~l~~p~nPt-G~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~ 306 (470)
.++++++|+|++ |. ..+++.+++|.++|++| |+++|+||+|.+| ..+. ......+.- ... +.||||.++ +
T Consensus 201 ~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~-~~lli~DEv~~g~-r~g~-~~~~~~~~~-~pd---i~t~sK~~~-~ 272 (429)
T 4e77_A 201 VACIIVEPVAGNMNCIPPLPEFLPGLRALCDEF-GALLIIDEVMTGF-RVAL-AGAQDYYHV-IPD---LTCLGKIIG-G 272 (429)
T ss_dssp EEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHH-TCEEEEEETTTBT-TTBT-TCHHHHTTC-CCS---EEEEEGGGG-T
T ss_pred EEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCc-ccCc-chHHHhcCC-CCC---eeeeccccc-C
Confidence 344556665544 44 44567799999999999 9999999999987 3332 111111111 111 458999998 8
Q ss_pred cceeeEEEcCHHHHHHHHHH---hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec
Q 012124 307 GWRLGYIAGPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 383 (470)
Q Consensus 307 G~r~G~~~~~~~~~~~l~~~---~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 383 (470)
|+|+||+++++++++.+... ....+++.+++.+.++.++|+.... +++.++.++..+..++.+.+.+.++ ++...
T Consensus 273 G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~ 350 (429)
T 4e77_A 273 GMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ-VGVYETLTELTDSLATGLRHAAKEE-NIPLV 350 (429)
T ss_dssp TSCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHHHHHHHT-TCCCE
T ss_pred CCCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhC-CCceE
Confidence 99999999999998877642 1334567899999999988874322 3444444444444445555444444 33333
Q ss_pred CCCceEEEeeeccCccCC-ccc--CCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 012124 384 EPQGAFYLFIDFSTYYGS-EAE--GFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKG 460 (470)
Q Consensus 384 ~~~~g~~~~~~~~~~~~~-~~~--~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~ 460 (470)
.+..|+++|+.+++.... ... .........++++.|+++ ||.+.|+.. ..+|+++..+++++++++++|+++
T Consensus 351 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~----~~~~~~~~~t~e~i~~~l~~l~~~ 425 (429)
T 4e77_A 351 VNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEE-GVYLAPSAF----EAGFMSLAHSNEDIQKTVNAARRC 425 (429)
T ss_dssp EEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHT-TEECCSSTT----SCEECCTTCCHHHHHHHHHHHHHH
T ss_pred EEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHC-CeEEeecCC----CCEEEeccCCHHHHHHHHHHHHHH
Confidence 344567788888653000 000 000000126788888776 999998742 467777667999999999999998
Q ss_pred HHh
Q 012124 461 LLT 463 (470)
Q Consensus 461 l~~ 463 (470)
+++
T Consensus 426 l~~ 428 (429)
T 4e77_A 426 FAK 428 (429)
T ss_dssp HTT
T ss_pred HHh
Confidence 864
No 182
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.96 E-value=7e-28 Score=239.66 Aligned_cols=288 Identities=14% Similarity=0.173 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHH----cCCEEEEecCcC
Q 012124 134 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI----ADATPVILPTRI 209 (470)
Q Consensus 134 ~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~~~ 209 (470)
.+.++.+++.+.+..|. +++++++|+++++..++.+++++||+|++++|+|+++...++. .|++++.++.+
T Consensus 80 ~p~~~~l~~~la~~~g~----~~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~- 154 (414)
T 3ndn_A 80 NPTVSVFEERLRLIEGA----PAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD- 154 (414)
T ss_dssp CHHHHHHHHHHHHHHTC----SEEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-
T ss_pred ChHHHHHHHHHHHHHCC----CcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC-
Confidence 45666666666665553 5789999999999999999999999999999999998877644 99999999873
Q ss_pred CCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC
Q 012124 210 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 289 (470)
Q Consensus 210 ~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~ 289 (470)
|++.|++++++++++|++++|+||||.+.+ +++|+++|+++ |++||+|++|....+. .++ .
T Consensus 155 ------d~~~l~~ai~~~t~~v~le~p~NptG~~~~---l~~i~~la~~~-g~~livDe~~~~~~~~----~~~-~---- 215 (414)
T 3ndn_A 155 ------DLSQWERALSVPTQAVFFETPSNPMQSLVD---IAAVTELAHAA-GAKVVLDNVFATPLLQ----QGF-P---- 215 (414)
T ss_dssp ------CHHHHHHHTSSCCSEEEEESSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTHHHHC----CCG-G----
T ss_pred ------CHHHHHHhcCCCCeEEEEECCCCCCCcccc---HHHHHHHHHHc-CCEEEEECCCcccccC----Cch-h----
Confidence 899999999999999999999999999988 88999999999 9999999999853221 111 1
Q ss_pred CCceEEEeccCccccccc-ceeeEEEcCHHHHH-HHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 012124 290 WERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVA-ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 367 (470)
Q Consensus 290 ~~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~-~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 367 (470)
.+..+++.|+||.++.+| +++||++++++.+. .+...........+++...++...++ .+....++..+++
T Consensus 216 ~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~-------~l~~r~~~~~~~a 288 (414)
T 3ndn_A 216 LGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLE-------TLAIRVQHSNASA 288 (414)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGG-------GHHHHHHHHHHHH
T ss_pred cCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 245689999999998668 89999999998876 66655555555566665444444333 3444555667777
Q ss_pred HHHHHHhccCCCCee-cCCC----------------ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECC
Q 012124 368 DFLVKSFGELEGVKM-SEPQ----------------GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 430 (470)
Q Consensus 368 ~~l~~~L~~~~g~~~-~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg 430 (470)
+.+.+.|++.|++.. ..|. .|..+|+.+++..... .++...+.+.|. ..++.+.+|
T Consensus 289 ~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~------~~~~~~~~~~l~-~~~~~~s~G 361 (414)
T 3ndn_A 289 QRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVA------KQRAFEVLDKMR-LIDISNNLG 361 (414)
T ss_dssp HHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGH------HHHHHHHHHHCS-SSEECSCCS
T ss_pred HHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcccc------HHHHHHHHHhCc-cceEcCCCC
Confidence 888888888776532 2221 3556899986420000 003556666653 447777777
Q ss_pred CCCC-----------------------CCCcEEEEeecCHHHHHHHHHHHHHHH
Q 012124 431 DAFG-----------------------DDTCIRISYAASLTTLQAAVERIKKGL 461 (470)
Q Consensus 431 ~~f~-----------------------~~~~iRls~~~~~~~i~~~l~~l~~~l 461 (470)
..+. .++.||||++. |+.++.++.|++++
T Consensus 362 ~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~--e~~~dli~dl~~al 413 (414)
T 3ndn_A 362 DAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL--EDTDDLIADIDRAL 413 (414)
T ss_dssp CSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred CCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHHhh
Confidence 6542 14689999997 22334445555544
No 183
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.96 E-value=9.8e-28 Score=242.27 Aligned_cols=361 Identities=12% Similarity=-0.001 Sum_probs=251.8
Q ss_pred HHHHHHHHHHHH-hcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCC---
Q 012124 79 TVAITDQATALA-QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP--- 154 (470)
Q Consensus 79 ~~~~~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~--- 154 (470)
..++.+...... .++....++....+ ...++.+.+++.+++.....+|...++..++++.+++++.+.+|.+.+.
T Consensus 25 ~~~v~~~~~~~~~~~~~~~~~~~~f~~-~~~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~ 103 (452)
T 2dgk_A 25 DDVAFQIINDELYLDGNARQNLATFCQ-TWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQ 103 (452)
T ss_dssp HHHHHHHHHHHGGGSCCCTTBCSCCSC-CCCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSC
T ss_pred HHHHHHHHHHHhcCCCCCccCCCCeeC-CCchHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccC
Confidence 345555555544 33332233333333 2345778888888876655667777788999999999999999964332
Q ss_pred CcEEEecChHHHHHHHHHHhcC--------CC-----CeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHh
Q 012124 155 DQILVSNGAKQSILQAVLAVCS--------PG-----DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLE 221 (470)
Q Consensus 155 ~~i~it~g~~~al~~~~~~l~~--------~g-----d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~ 221 (470)
..+++|+|+++++.+++.++.+ +| ++|++++ +|..+...++..|++++.+|+++ +++.+|++.|+
T Consensus 104 ~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~ 181 (452)
T 2dgk_A 104 AVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRP-GQLFMDPKRMI 181 (452)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBT-TBCSCCHHHHH
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCC-CCCeECHHHHH
Confidence 2499999999999999888754 55 5999999 99999999999999999999974 35779999999
Q ss_pred hhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHh------CCCEEEEEecccccccc---CCCCcccccccCCCCCc
Q 012124 222 SKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK------HPRLLVLSDEIYEHIIY---APATHTSFASLPGMWER 292 (470)
Q Consensus 222 ~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~------~~~~~iI~Dd~~~~~~~---~~~~~~~~~~~~~~~~~ 292 (470)
+++++++++|++++|+||||.+.+ +++|.++|++ + ++++++|++|+.+.. .+. .. ..+. ..+-
T Consensus 182 ~~i~~~t~~v~~~~~~n~tG~~~~---l~~I~~ia~~~~~~~~~-~~~l~vD~a~~~~~~~~~~~~-~~--~~~~-~~~~ 253 (452)
T 2dgk_A 182 EACDENTIGVVPTFGVTYTGNYEF---PQPLHDALDKFQADTGI-DIDMHIDAASGGFLAPFVAPD-IV--WDFR-LPRV 253 (452)
T ss_dssp HHCCTTEEEEECBBSCTTTCBBCC---HHHHHHHHHHHHHHHCC-CCCEEEECTTGGGTHHHHCTT-CC--CSTT-STTE
T ss_pred HHHhhCCEEEEEEcCCcCCcccCC---HHHHHHHHHHHhhccCC-CCcEEEEcccHHHHHHhhCcc-ch--hhcC-CCCC
Confidence 999989999999999999999988 7888888888 6 899999999998643 221 11 1111 1234
Q ss_pred eEEEeccCcccccccceeeEEEcCHH-HH-HHHHHHhhhc---------cCCC---ChHHHHHHHHHHhcCCCChHHHHH
Q 012124 293 TLTVNGFSKAFAMTGWRLGYIAGPKH-FV-AACNKIQSQF---------TSGA---SSISQKAGVAALGLGYAGGEVVSK 358 (470)
Q Consensus 293 ~i~i~S~sK~~~~~G~r~G~~~~~~~-~~-~~l~~~~~~~---------~~~~---~~~~q~a~~~~l~~~~~~~~~~~~ 358 (470)
.++..|++|.+ +.|.++||++++++ ++ +.+....... .... ..+.|.++...+. .+.+++
T Consensus 254 d~~~~~~hK~~-~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg-----~~g~~~ 327 (452)
T 2dgk_A 254 KSISASGHKFG-LAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG-----REGYTK 327 (452)
T ss_dssp EEEEEETTTTT-CCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH-----HHHHHH
T ss_pred cEEEECccccc-CCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh-----HHHHHH
Confidence 56778889955 58899999998643 33 3321101110 0111 2334444444442 456788
Q ss_pred HHHHHHHHHHHHHHHhccCCCCeecCC-----CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC--
Q 012124 359 MVKAFRERRDFLVKSFGELEGVKMSEP-----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD-- 431 (470)
Q Consensus 359 ~~~~~~~~~~~l~~~L~~~~g~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~-- 431 (470)
+.+++.++++++.+.|++++++++..| ..++ +.+++++... ...+..++.++|.++ ||.+....
T Consensus 328 ~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~-v~f~~~~~~~-------~~~~~~~l~~~L~~~-Gi~v~~~~~~ 398 (452)
T 2dgk_A 328 VQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPA-VCFKLKDGED-------PGYTLYDLSERLRLR-GWQVPAFTLG 398 (452)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSE-EEEEECTTCC-------CSCCHHHHHHHHHHT-TCBCCEEECS
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEE-EEEEecCccc-------ccCCHHHHHHHHHhc-CCeeeeeeCC
Confidence 888999999999999999877887643 3344 5556653200 001457888888766 88543211
Q ss_pred -CCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 432 -AFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 432 -~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
.....+++|++++. ++++++.+++.|++++++++
T Consensus 399 ~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~~ 435 (452)
T 2dgk_A 399 GEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLS 435 (452)
T ss_dssp TTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11124589999986 78999999999999887654
No 184
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.96 E-value=5.9e-28 Score=241.77 Aligned_cols=336 Identities=14% Similarity=0.110 Sum_probs=218.5
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCC-CCCC-----CCcCcHHHHHHHH-HHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGF-TRYT-----PNAGTLELRSAIC-HKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~-~~y~-----~~~g~~~lr~~ia-~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
+.++|..+.+.. ++.+++++.+++.+.. ..|. ......++.+.++ +++.+..|. +. ..++++|+++++
T Consensus 33 ~~i~l~~~~~~~--~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~-~~v~~~~Gs~a~ 107 (425)
T 3ecd_A 33 SQVELIASENIV--SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNA--GH-ANVQPHSGAQAN 107 (425)
T ss_dssp HSEECCTTCCCC--CHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTC--SE-EECCCSSHHHHH
T ss_pred cceeeecccCCC--CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCC--CC-ceeecCchHHHH
Confidence 357887666543 8889999988875321 1221 1111112334443 666655563 22 234588888999
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCC---hHHHHHHcCC--EEEEecCcCCCCCccCHHhHhhhcc-CCceEEEEcCCCCCcc
Q 012124 168 LQAVLAVCSPGDEVIIPAPFWVS---YPEMARIADA--TPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTG 241 (470)
Q Consensus 168 ~~~~~~l~~~gd~Vlv~~p~y~~---~~~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG 241 (470)
..++.+++++||+|++++|+|++ +.......|. +++.++.++ +++.+|++.|+++++ +++++|++++|+||+
T Consensus 108 ~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~- 185 (425)
T 3ecd_A 108 GAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSR-DTMLIDYDQVEALAQQHKPSLIIAGFSAYPR- 185 (425)
T ss_dssp HHHHHHHCCTTCEEEEECC------------------CEEEEECCCT-TTSSCCHHHHHHHHHHHCCSEEEEECSCCCS-
T ss_pred HHHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCc-ccCccCHHHHHHHHhhcCCcEEEEccccCCC-
Confidence 99999999999999999999988 2222223444 566676653 346799999999996 589999999899974
Q ss_pred cCCCHHHHHHHHHHHHhCCCEEEEEecccc-ccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC-HHH
Q 012124 242 SVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHF 319 (470)
Q Consensus 242 ~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~-~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~-~~~ 319 (470)
..+ +++|.++|++| |++||+||+|. ++.+.+.....+. ...+++.||||.+ +|.|+||++++ +++
T Consensus 186 -~~~---l~~i~~l~~~~-~~~li~De~~~~g~~~~~~~~~~~~------~~di~~~s~sK~l--~g~~~g~~~~~~~~~ 252 (425)
T 3ecd_A 186 -KLD---FARFRAIADSV-GAKLMVDMAHIAGVIAAGRHANPVE------HAHVVTSTTHKTL--RGPRGGFVLTNDEEI 252 (425)
T ss_dssp -CCC---HHHHHHHHHHH-TCEEEEECGGGHHHHHTTSSCCGGG------TCSEEEEESSGGG--CCCSCEEEEESCHHH
T ss_pred -cCC---HHHHHHHHHHc-CCEEEEECcChHhhhhcccccCchh------cCcEEEecCCccc--CCCCcEEEEeCCHHH
Confidence 444 78999999999 99999999954 3334332211211 1238899999987 67789999998 567
Q ss_pred HHHHHHHhhhccC-CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC-CceEEEeeeccC
Q 012124 320 VAACNKIQSQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFST 397 (470)
Q Consensus 320 ~~~l~~~~~~~~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~g~~~~~~~~~ 397 (470)
.+.+......... +++...+.++..++... ..+++++.+++++++++++.+.|.+. |+.+..+ ..++++|+.++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 329 (425)
T 3ecd_A 253 AKKINSAVFPGLQGGPLMHVIAGKAVAFGEA--LTDDFKTYIDRVLANAQALGDVLKAG-GVDLVTGGTDNHLLLVDLRP 329 (425)
T ss_dssp HHHHHHHHC-----CCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGG
T ss_pred HHHHHhhhCccccCCccHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHhC-CCeeccCCCCceEEEEEeCC
Confidence 7777665433322 33444444444444321 24677888899999999999999886 8887654 456778888764
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEE----CCCCCC--CCCcEEEEeec------CHHHHHHHHHHHHHHHHhh
Q 012124 398 YYGSEAEGFGKIENSESLCRYLLDKAQVALV----PGDAFG--DDTCIRISYAA------SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~----pg~~f~--~~~~iRls~~~------~~~~i~~~l~~l~~~l~~~ 464 (470)
.. .+...+.+.| +++||.+. ||..+. .++++|+++.. ++++++++++.|++++++.
T Consensus 330 ~~----------~~~~~~~~~l-~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 330 KG----------LKGAQVEQAL-ERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp GT----------CCHHHHHHHH-HHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CC----------CCHHHHHHHH-HHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 21 1556666666 45599999 543222 24589999653 4799999999999988764
No 185
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.96 E-value=9.2e-28 Score=237.50 Aligned_cols=284 Identities=16% Similarity=0.203 Sum_probs=207.9
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCCEEEE
Q 012124 129 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVI 204 (470)
Q Consensus 129 ~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~ 204 (470)
+..+..++++.+++++. . . +.|++++| ++++..+++.++++||+|++++|+|++.... ++..|++++.
T Consensus 50 ~~~~~~~l~~~la~~~~----~--~-~~i~~~sG-t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 121 (386)
T 1cs1_A 50 GNPTRDVVQRALAELEG----G--A-GAVLTNTG-MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLF 121 (386)
T ss_dssp CCHHHHHHHHHHHHHHT----C--S-EEEEESSH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEE
T ss_pred CCccHHHHHHHHHHHhC----C--C-cEEEeCCH-HHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEE
Confidence 45667889999999873 2 2 66777666 8999999999999999999999999975543 3668999999
Q ss_pred ecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccc
Q 012124 205 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 284 (470)
Q Consensus 205 v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~ 284 (470)
++.+ |++.+++++++++++|++++|+||||.+++ +++|.++|+++ |+++|+||+|..+.+.. ++
T Consensus 122 ~~~~-------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~De~~~~~~~~~----~~- 185 (386)
T 1cs1_A 122 VDQG-------DEQALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREV-GAVSVVDNTFLSPALQN----PL- 185 (386)
T ss_dssp ECTT-------CHHHHHHHHHTCCSEEEEECSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTCTTTCC----GG-
T ss_pred eCCC-------CHHHHHHhhccCCcEEEEeCCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCCcccccCC----cc-
Confidence 8862 889999999889999999999999999998 88999999999 99999999999865431 11
Q ss_pred ccCCCCCceEEEeccCccccccccee-eEEEcCH-HHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012124 285 SLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPK-HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 362 (470)
Q Consensus 285 ~~~~~~~~~i~i~S~sK~~~~~G~r~-G~~~~~~-~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 362 (470)
. .+.++++.|+||.++.+|.|+ ||+++++ ++++.+......++.+.+++.+.++...++. +....+.
T Consensus 186 ~----~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~ 254 (386)
T 1cs1_A 186 A----LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT-------LVPRMEL 254 (386)
T ss_dssp G----GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTT-------HHHHHHH
T ss_pred c----cCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccH-------HHHHHHH
Confidence 1 356799999999998789887 9999985 8888888777666666788888777666652 3344455
Q ss_pred HHHHHHHHHHHhccCCCCeec--------------C----CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCC
Q 012124 363 FRERRDFLVKSFGELEGVKMS--------------E----PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 424 (470)
Q Consensus 363 ~~~~~~~l~~~L~~~~g~~~~--------------~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 424 (470)
..++++.+.+.|++++.+... . ..+++ +.+.+++ ....+.+.| ++.|
T Consensus 255 ~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~~l-~~~g 319 (386)
T 1cs1_A 255 AQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAM-LSFELDG-------------DEQTLRRFL-GGLS 319 (386)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSE-EEEEESS-------------CHHHHHHHH-HTCS
T ss_pred HHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceE-EEEEECC-------------CHHHHHHHH-HhCC
Confidence 566677777777665443211 1 12445 5556653 334555555 4569
Q ss_pred EEEECCCCCC---------------------------CCCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 425 VALVPGDAFG---------------------------DDTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 425 I~v~pg~~f~---------------------------~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
|.+.+.+ |+ .++++|++++. ++.++.+++|.++++++.
T Consensus 320 i~~~~~~-~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~--~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 320 LFTLAES-LGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI--EDGEDLIADLENGFRAAN 384 (386)
T ss_dssp SSEEBSC-CCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHHHHHT
T ss_pred cceEccc-CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEcc--CCHHHHHHHHHHHHHHhh
Confidence 9886421 11 14799999998 334455555555555543
No 186
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.96 E-value=4.1e-28 Score=240.95 Aligned_cols=191 Identities=15% Similarity=0.176 Sum_probs=157.1
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEE
Q 012124 129 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVI 204 (470)
Q Consensus 129 ~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~ 204 (470)
+..+..+|++.+++++. . .+.|++++| ++++..++. ++++||+|++++|+|++....+ +..|++++.
T Consensus 65 ~~p~~~~l~~~la~~~g----~---~~~i~~~sG-~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~ 135 (403)
T 3cog_A 65 GNPTRNCLEKAVAALDG----A---KYCLAFASG-LAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISF 135 (403)
T ss_dssp -CHHHHHHHHHHHHHHT----C---SEEEEESCH-HHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEE
T ss_pred CCchHHHHHHHHHHHhC----C---CcEEEECCH-HHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEE
Confidence 44567899999999873 2 256777766 589999998 8999999999999999865543 568999999
Q ss_pred ecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC-EEEEEeccccccccCCCCcccc
Q 012124 205 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR-LLVLSDEIYEHIIYAPATHTSF 283 (470)
Q Consensus 205 v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~-~~iI~Dd~~~~~~~~~~~~~~~ 283 (470)
++.+ |++.+++++++++++|++++|+||||.+++ +++|+++|+++ | +++|+|++|..+.+.. ++
T Consensus 136 v~~~-------d~~~l~~~i~~~t~~v~~~~p~nptG~~~~---l~~i~~la~~~-g~~~livD~~~~~~~~~~----~~ 200 (403)
T 3cog_A 136 VDCS-------KIKLLEAAITPETKLVWIETPTNPTQKVID---IEGCAHIVHKH-GDIILVVDNTFMSPYFQR----PL 200 (403)
T ss_dssp ECTT-------SHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTSS-SCCEEEEECTTTCTTTCC----TT
T ss_pred ECCC-------CHHHHHHhcCcCCeEEEEECCCCCCCeeeC---HHHHHHHHHHc-CCCEEEEECCCcccccCC----cc
Confidence 9863 889999999999999999999999999998 89999999999 9 9999999999865421 11
Q ss_pred cccCCCCCceEEEeccCccccccc-ceeeEEEcC-HHHHHHHHHHhhhccCCCChHHHHHHHHHHhc
Q 012124 284 ASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGL 348 (470)
Q Consensus 284 ~~~~~~~~~~i~i~S~sK~~~~~G-~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~ 348 (470)
+ .+.++++.|+||.++.+| .|+||++++ +++++.+......++.+.+++.+.++...++.
T Consensus 201 ---~--~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~ 262 (403)
T 3cog_A 201 ---A--LGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKT 262 (403)
T ss_dssp ---T--TTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT
T ss_pred ---c--cCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH
Confidence 1 256799999999997666 479999984 78989888877767777889988888877764
No 187
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.96 E-value=1.1e-27 Score=237.80 Aligned_cols=281 Identities=17% Similarity=0.186 Sum_probs=198.6
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEE
Q 012124 129 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVI 204 (470)
Q Consensus 129 ~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~ 204 (470)
+.....++++.+++++ |. ++.++++++++++..++.+++++||+|++++|+|+++...+ +..|.+++.
T Consensus 63 ~~~~~~~l~~~la~~~----g~----~~~i~~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 134 (398)
T 1gc0_A 63 SNPTLNLLEARMASLE----GG----EAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRH 134 (398)
T ss_dssp CCHHHHHHHHHHHHHH----TC----SEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEE
T ss_pred CChHHHHHHHHHHHHh----CC----CcEEEECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEE
Confidence 3445566677777665 42 24555555579999999999999999999999999988766 678999999
Q ss_pred ecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccc
Q 012124 205 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 284 (470)
Q Consensus 205 v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~ 284 (470)
++. .|++.+++++++++++|++++|+||||.+++ +++|+++|+++ |+++|+|++|..+.+.. ++
T Consensus 135 ~~~-------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~D~~~~~~~~~~----~~- 198 (398)
T 1gc0_A 135 VDM-------ADLQALEAAMTPATRVIYFESPANPNMHMAD---IAGVAKIARKH-GATVVVDNTYCTPYLQR----PL- 198 (398)
T ss_dssp ECT-------TCHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHGGG-TCEEEEECTTTHHHHCC----GG-
T ss_pred ECC-------CCHHHHHHhcCCCCeEEEEECCCCCCccccc---HHHHHHHHHHc-CCEEEEECCCcccccCC----ch-
Confidence 886 2899999999989999999999999999998 89999999999 99999999998765431 11
Q ss_pred ccCCCCCceEEEeccCccccccccee-eEEEcCHHHHH-HHHHHhhh-ccCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Q 012124 285 SLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVA-ACNKIQSQ-FTSGASSISQKAGVAALGLGYAGGEVVSKMVK 361 (470)
Q Consensus 285 ~~~~~~~~~i~i~S~sK~~~~~G~r~-G~~~~~~~~~~-~l~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~ 361 (470)
. .+.++++.|+||.++.+|.|+ ||++++++.++ .+...... .+.+.+++.+.++...++. +....+
T Consensus 199 ~----~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~ 267 (398)
T 1gc0_A 199 E----LGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT-------LNLRMD 267 (398)
T ss_dssp G----GTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT-------HHHHHH
T ss_pred h----hCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccch-------HHHHHH
Confidence 1 246699999999998899998 99999988766 55555544 4556788888877777753 233334
Q ss_pred HHHHHHHHHHHHhccCCCC--------------eecCC----CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcC
Q 012124 362 AFRERRDFLVKSFGELEGV--------------KMSEP----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 423 (470)
Q Consensus 362 ~~~~~~~~l~~~L~~~~g~--------------~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 423 (470)
...++.+.+.+.|++++++ .+..+ .+++ +.++++. ..+....++++.
T Consensus 268 ~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~-~~~~l~~--------------~~~~~~~~l~~~ 332 (398)
T 1gc0_A 268 RHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGM-IAFELKG--------------GIGAGRRFMNAL 332 (398)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTE-EEEEETT--------------HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceE-EEEEECC--------------CHHHHHHHHHhC
Confidence 4455555555666554332 22222 3455 4446652 222334455555
Q ss_pred CEEEEC---CCCC----------------------C-CCCcEEEEeec--CHHHHHHHHHHHHH
Q 012124 424 QVALVP---GDAF----------------------G-DDTCIRISYAA--SLTTLQAAVERIKK 459 (470)
Q Consensus 424 gI~v~p---g~~f----------------------~-~~~~iRls~~~--~~~~i~~~l~~l~~ 459 (470)
++.+.. |+.+ + .++.+|+|++. ++++++.+.+.|++
T Consensus 333 ~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~ 396 (398)
T 1gc0_A 333 QLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKA 396 (398)
T ss_dssp SSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred CCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHh
Confidence 776655 3210 1 14789999997 55667776666654
No 188
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.96 E-value=4.9e-28 Score=234.28 Aligned_cols=278 Identities=15% Similarity=0.161 Sum_probs=198.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecCcCC
Q 012124 135 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRIS 210 (470)
Q Consensus 135 ~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~ 210 (470)
+|++.+++++ |. + +.+++++| ++++..++.+++++||+|++++|+|+++...+ +..|++++.++.
T Consensus 2 ~l~~~la~~~----g~--~-~~i~~~sG-~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--- 70 (331)
T 1pff_A 2 ALEGKIAKLE----HA--E-ACAATASG-MGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM--- 70 (331)
T ss_dssp HHHHHHHHHH----TC--S-EEEEESSH-HHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT---
T ss_pred hHHHHHHHHh----CC--C-eEEEeCCh-HHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC---
Confidence 5888888886 32 2 45555555 89999999999999999999999999987665 458999999886
Q ss_pred CCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHh-CCCEEEEEeccccccccCCCCcccccccCCC
Q 012124 211 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK-HPRLLVLSDEIYEHIIYAPATHTSFASLPGM 289 (470)
Q Consensus 211 ~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~-~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~ 289 (470)
.|++.+++++++++++|++++|+||||.+++ +++|.++|++ + |+++|+|++|..+.+.. ++ .
T Consensus 71 ----~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~-~~~li~D~a~~~~~~~~----~~-~---- 133 (331)
T 1pff_A 71 ----AVPGNIEKHLKPNTRIVYFETPANPTLKVID---IEDAVKQARKQK-DILVIVDNTFASPILTN----PL-D---- 133 (331)
T ss_dssp ----TSTTHHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSS-SCEEEEECTTTHHHHCC----GG-G----
T ss_pred ----CCHHHHHHhhcCCCeEEEEECCCCCcCcccC---HHHHHHHHhhhc-CCEEEEECCCcccccCC----hh-h----
Confidence 4889999999989999999999999999998 8999999999 9 99999999998754421 12 1
Q ss_pred CCceEEEeccCcccccccce-eeEEEcCH-HHHHHHHHHhhh-ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 012124 290 WERTLTVNGFSKAFAMTGWR-LGYIAGPK-HFVAACNKIQSQ-FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 366 (470)
Q Consensus 290 ~~~~i~i~S~sK~~~~~G~r-~G~~~~~~-~~~~~l~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~ 366 (470)
.+.++++.|+||.++.+|.| +||+++++ ++++.+...... .+.+.+++.+.++...++. .....+...+.....
T Consensus 134 ~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~ 210 (331)
T 1pff_A 134 LGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLT---LDMRVKRAAENAQKV 210 (331)
T ss_dssp GTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcch---HHHHHHHHHHHHHHH
Confidence 35779999999999889999 79999998 899888876655 5566788888776666653 122222222222222
Q ss_pred HHHHHH----------HhccCCCCeecCC----CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC
Q 012124 367 RDFLVK----------SFGELEGVKMSEP----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 432 (470)
Q Consensus 367 ~~~l~~----------~L~~~~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~ 432 (470)
.+++.+ .|.+++++++..+ .+++ +.+.++ +..++.+.| ++.||.+.+.+.
T Consensus 211 ~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~~~~~~l-~~~gI~~~~~s~ 274 (331)
T 1pff_A 211 AEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSM-IAFDVD--------------GLEKAKKVL-DNCHVVSLAVSL 274 (331)
T ss_dssp HHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSE-EEEECS--------------SHHHHHHHH-HTCSSSEECSSC
T ss_pred HHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceE-EEEEEC--------------CHHHHHHHH-HhCCCceeccCC
Confidence 222222 1222334443321 2344 566664 344555554 556997765421
Q ss_pred -------------------------CCC-CCcEEEEeec--CHHHHHHHHHHHHH
Q 012124 433 -------------------------FGD-DTCIRISYAA--SLTTLQAAVERIKK 459 (470)
Q Consensus 433 -------------------------f~~-~~~iRls~~~--~~~~i~~~l~~l~~ 459 (470)
++. ++++|++++. ++++++.+++.|++
T Consensus 275 g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~ 329 (331)
T 1pff_A 275 GGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDL 329 (331)
T ss_dssp CSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred CCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Confidence 111 5799999997 66777777776654
No 189
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.96 E-value=4.6e-27 Score=232.68 Aligned_cols=282 Identities=14% Similarity=0.128 Sum_probs=208.7
Q ss_pred cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEec
Q 012124 131 AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILP 206 (470)
Q Consensus 131 ~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~ 206 (470)
....+|++.+++++ |. +++++++|+++++..++..++++||+|++++|+|+++...+ +..|.+++.++
T Consensus 66 ~~~~~l~~~la~~~----g~----~~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 137 (392)
T 3qhx_A 66 PTRTALEAALAAVE----DA----AFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVA 137 (392)
T ss_dssp HHHHHHHHHHHHHT----TC----SEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEEC
T ss_pred hHHHHHHHHHHHHh----CC----CcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeC
Confidence 34556777777764 32 47899999999999999999999999999999999887766 67899999998
Q ss_pred CcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccccc
Q 012124 207 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL 286 (470)
Q Consensus 207 ~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~ 286 (470)
.+ |++.+++++++++++|++++|+||||.+.+ +++|+++|++| |+++|+|++|...... .++ .
T Consensus 138 ~~-------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~-g~~li~D~~~~~~~~~----~~~-~- 200 (392)
T 3qhx_A 138 LA-------DLDAVRAAIRPTTRLIWVETPTNPLLSIAD---IAGIAQLGADS-SAKVLVDNTFASPALQ----QPL-S- 200 (392)
T ss_dssp TT-------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHH-TCEEEEECTTTCTTTC----CGG-G-
T ss_pred CC-------CHHHHHHhhCCCCeEEEEECCCCCCcEEec---HHHHHHHHHHc-CCEEEEECCCcccccC----ChH-H-
Confidence 63 899999999999999999999999999998 89999999999 9999999999854221 111 1
Q ss_pred CCCCCceEEEeccCccccccc-ceeeEEEcC-HHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 012124 287 PGMWERTLTVNGFSKAFAMTG-WRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 364 (470)
Q Consensus 287 ~~~~~~~i~i~S~sK~~~~~G-~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~ 364 (470)
.+..+++.|+||.++.+| +|+||++++ +++.+.+.........+.+++.+.++...++. +....++..
T Consensus 201 ---~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~-------l~~~~~~~~ 270 (392)
T 3qhx_A 201 ---LGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKT-------LVLRMQRHS 270 (392)
T ss_dssp ---GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-------HHHHHHHHH
T ss_pred ---hCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH-------HHHHHHHHH
Confidence 245699999999998666 799999997 68888888887777788888888887777764 223344556
Q ss_pred HHHHHHHHHhccCCCCe-ecCC----------------CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEE
Q 012124 365 ERRDFLVKSFGELEGVK-MSEP----------------QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 427 (470)
Q Consensus 365 ~~~~~l~~~L~~~~g~~-~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v 427 (470)
++.+.+.+.|++.+++. +..| ..|..+++.++... .....+...| +..++.+
T Consensus 271 ~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~----------~~~~~~~~~l-~~~~~~~ 339 (392)
T 3qhx_A 271 ENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGR----------TAAEQLCAKT-NIFILAE 339 (392)
T ss_dssp HHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCH----------HHHHHHHHHC-SSSEECS
T ss_pred HHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcH----------HHHHHHHHhC-CCceECC
Confidence 66667777777766553 2211 11445788887520 0355666655 3447777
Q ss_pred ECCCCCC--------------------CCCcEEEEeecCHHHHHHHHHHHHHH
Q 012124 428 VPGDAFG--------------------DDTCIRISYAASLTTLQAAVERIKKG 460 (470)
Q Consensus 428 ~pg~~f~--------------------~~~~iRls~~~~~~~i~~~l~~l~~~ 460 (470)
..|+.+. .++.||||++.. +.++.++.|.++
T Consensus 340 s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e--~~~~~i~~l~~a 390 (392)
T 3qhx_A 340 SLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIE--DVADLLDDLKQA 390 (392)
T ss_dssp CCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSS--CHHHHHHHHHHH
T ss_pred CCCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccC--CHHHHHHHHHHH
Confidence 7776532 145799999972 233344444444
No 190
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.96 E-value=9.6e-27 Score=230.27 Aligned_cols=281 Identities=15% Similarity=0.177 Sum_probs=201.5
Q ss_pred CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCCEEEEe
Q 012124 130 NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVIL 205 (470)
Q Consensus 130 ~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v 205 (470)
.....+|++.+++++ |. +++++++++++++..++.+++++||+|++++|+|+++... ++..|.+++.+
T Consensus 58 ~~~~~~l~~~la~~~----g~----~~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v 129 (389)
T 3acz_A 58 NPTVEQFEEMVCSIE----GA----AGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLI 129 (389)
T ss_dssp CHHHHHHHHHHHHHH----TC----SEEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred ChHHHHHHHHHHHHh----CC----CeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEE
Confidence 345567888888875 32 2566677778999999999999999999999999987665 57799999999
Q ss_pred cCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccc
Q 012124 206 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS 285 (470)
Q Consensus 206 ~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~ 285 (470)
+. .|++.+++++++++++|++++|+||||.+++ +++|.++|+++ |+++|+|++|..+.+. .++
T Consensus 130 ~~-------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~-~~~livD~~~~~~~~~----~~~-- 192 (389)
T 3acz_A 130 DT-------SDVEKVKAAWKPNTKMVYLESPANPTCKVSD---IKGIAVVCHER-GARLVVDATFTSPCFL----KPL-- 192 (389)
T ss_dssp CT-------TCHHHHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHH-TCEEEEECTTTCTTTC----CGG--
T ss_pred CC-------CCHHHHHHhcCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCcccccc----Ccc--
Confidence 86 3899999999999999999999999999998 88999999999 9999999999875432 122
Q ss_pred cCCCCCceEEEeccCccccccccee-eEEEcCH-HHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012124 286 LPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPK-HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363 (470)
Q Consensus 286 ~~~~~~~~i~i~S~sK~~~~~G~r~-G~~~~~~-~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~ 363 (470)
+ .+.++++.|+||.++.+|.|+ ||+++++ ++++.+......+..+.+++.+.++...++. ....+++.
T Consensus 193 -~--~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~---l~~r~~~~---- 262 (389)
T 3acz_A 193 -E--LGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKT---LPIRMQIH---- 262 (389)
T ss_dssp -G--TTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT---HHHHHHHH----
T ss_pred -c--cCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCccH---HHHHHHHH----
Confidence 1 256699999999998899998 9999998 9999888777656666788877777777753 12223333
Q ss_pred HHHHHHHHHHhccC--------------CCCeecCC----CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCE
Q 012124 364 RERRDFLVKSFGEL--------------EGVKMSEP----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 425 (470)
Q Consensus 364 ~~~~~~l~~~L~~~--------------~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI 425 (470)
.++.+.+.+.|++. |++.+..+ .+++ +.+.++ ...++ .+++++.||
T Consensus 263 ~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~-~~~~l~--------------~~~~~-~~~l~~~~i 326 (389)
T 3acz_A 263 MENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGST-FLFEMK--------------SFEAA-KKLMEHLKV 326 (389)
T ss_dssp HHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSE-EEEEES--------------SHHHH-HHHHTTCSS
T ss_pred HHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeE-EEEEEC--------------CHHHH-HHHHHhCCC
Confidence 33333344444332 23222211 2444 556664 22233 344555688
Q ss_pred EEEC---C------CCC----------------CC-CCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 426 ALVP---G------DAF----------------GD-DTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 426 ~v~p---g------~~f----------------~~-~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
.+.+ | ..+ +. ++.+|+|++.. +.++.++.|.+++++
T Consensus 327 ~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~--~~~~li~~l~~al~~ 388 (389)
T 3acz_A 327 CTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIE--NVDDIIADLKQALEL 388 (389)
T ss_dssp SEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSS--CHHHHHHHHHHHHTC
T ss_pred cEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccC--CHHHHHHHHHHHHhh
Confidence 7766 4 211 11 47899999974 455666777776653
No 191
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.96 E-value=6.7e-27 Score=231.95 Aligned_cols=316 Identities=17% Similarity=0.159 Sum_probs=218.8
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcC--cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCeEEEcC
Q 012124 109 PVLIAEAGINAIREGFTRYTPNAG--TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPA 185 (470)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~y~~~~g--~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l-~~~gd~Vlv~~ 185 (470)
++++++++.+.+.. .|.++.| ..++|+++++++. .++|++|+|+++++.+++.++ +++||+|++++
T Consensus 11 ~~~v~~a~~~~~~~---~~~~~~g~~~~~l~~~la~~~~--------~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~ 79 (394)
T 1o69_A 11 GGNELKYIEEVFKS---NYIAPLGEFVNRFEQSVKDYSK--------SENALALNSATAALHLALRVAGVKQDDIVLASS 79 (394)
T ss_dssp -CCHHHHHHHHHHH---TTTSCTTHHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEES
T ss_pred CHHHHHHHHHHHHc---CCccCCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECC
Confidence 35677777777765 3656667 8999999999973 268999999999999999999 89999999999
Q ss_pred CCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC---CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCE
Q 012124 186 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 262 (470)
Q Consensus 186 p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~ 262 (470)
|+|+++...++..|++++.++++ .++.+|++.|++++++ ++++|++++ |||...+ +++|.++|+++ |+
T Consensus 80 ~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~---l~~i~~l~~~~-~~ 150 (394)
T 1o69_A 80 FTFIASVAPICYLKAKPVFIDCD--ETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAK---MDEIVEICKEN-DI 150 (394)
T ss_dssp SSCGGGTHHHHHTTCEEEEECBC--TTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCC---HHHHHHHHHHT-TC
T ss_pred CccHHHHHHHHHcCCEEEEEEeC--CCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhh---HHHHHHHHHHc-CC
Confidence 99999999999999999999986 4566999999999875 789988874 8997776 88999999999 99
Q ss_pred EEEEecccc-ccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC-HHHHHHHHHHhhhccCC-------
Q 012124 263 LVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFTSG------- 333 (470)
Q Consensus 263 ~iI~Dd~~~-~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~------- 333 (470)
+||+|++|+ ++.+.+.. +..+ .+ +.+.||||..+++|.|+||++++ +++++.+.........+
T Consensus 151 ~li~Dea~~~g~~~~~~~---~~~~---~~--~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 222 (394)
T 1o69_A 151 VLIEDAAEALGSFYKNKA---LGTF---GE--FGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHL 222 (394)
T ss_dssp EEEEECTTCTTCEETTEE---TTSS---SS--EEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCS
T ss_pred EEEEECcCcccceeCCcc---cccc---cC--cEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCcccccc
Confidence 999999998 45444321 1111 12 45556643333456799999995 88888887764432111
Q ss_pred -------CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC----ceE-EEeeeccCcc--
Q 012124 334 -------ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAF-YLFIDFSTYY-- 399 (470)
Q Consensus 334 -------~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~g~-~~~~~~~~~~-- 399 (470)
++.+...++...++ ++++..++++++++++.+.|.++ +++.++. +++ .+++.++...
T Consensus 223 ~~g~~~~~~~~~aa~~l~~l~-------~l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~ 293 (394)
T 1o69_A 223 DYGYNYRLSNVLGAIGVAQME-------VLEQRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALINFDKNE 293 (394)
T ss_dssp SCCCBCBCCHHHHHHHHHHHT-------THHHHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEESCCGGG
T ss_pred ccCcccCcCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEecchhhc
Confidence 22233322222222 34556777888888888888875 5544332 343 2566665310
Q ss_pred --------CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC------CC--------------CcEEEEeec--CHHH
Q 012124 400 --------GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG------DD--------------TCIRISYAA--SLTT 449 (470)
Q Consensus 400 --------~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~------~~--------------~~iRls~~~--~~~~ 449 (470)
.....+.....+..++.+.|.++ ||.+.+|.... .. ..+|+.... +++|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ed 372 (394)
T 1o69_A 294 LNACQKDINISQKNITLHPKISKLIEDLKNK-QIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDD 372 (394)
T ss_dssp SCCCCEEEECCCCCCCCCHHHHHHHHHHHHT-TCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHH
T ss_pred cccccccccccccccccccCHHHHHHHHHHc-CCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHH
Confidence 00000000000456788887664 99999984220 00 234444443 8999
Q ss_pred HHHHHHHHHHHHH
Q 012124 450 LQAAVERIKKGLL 462 (470)
Q Consensus 450 i~~~l~~l~~~l~ 462 (470)
++.+++.|+++++
T Consensus 373 i~~~~~~l~~~~~ 385 (394)
T 1o69_A 373 VYEISKLILKSIK 385 (394)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998865
No 192
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.95 E-value=4.5e-26 Score=227.25 Aligned_cols=300 Identities=18% Similarity=0.194 Sum_probs=208.8
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCCC--cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEE
Q 012124 105 DFDTPVLIAEAGINAIREGFTRYTPN--AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVI 182 (470)
Q Consensus 105 ~~~~~~~~~~a~~~~~~~~~~~y~~~--~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vl 182 (470)
+++.++.+.+++. ....+.|+.. ....++++.+++++ |. +++++|+|+++++..++.+++++||+|+
T Consensus 31 ~~~~~~~~~~~~~---~~~~~~y~~~~~~~~~~l~~~la~~~----g~----~~~~~~~~gt~a~~~al~~l~~~gd~vi 99 (412)
T 2cb1_A 31 GFKTLEEGQERFA---TGEGYVYARQKDPTAKALEERLKALE----GA----LEAVVLASGQAATFAALLALLRPGDEVV 99 (412)
T ss_dssp CCSSHHHHHHHHH---HCCSCSBTTTCCHHHHHHHHHHHHHH----TC----SEEEEESSHHHHHHHHHHTTCCTTCEEE
T ss_pred ecCChHHHHHHhc---cccCcCcCCCCChHHHHHHHHHHHHh----CC----CcEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 4455666666553 3344566543 44667777777775 32 4899999999999999999999999999
Q ss_pred EcCCCCCChHHHH----HHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHh
Q 012124 183 IPAPFWVSYPEMA----RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK 258 (470)
Q Consensus 183 v~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~ 258 (470)
+++|+|++....+ +..|++++.++. |++.|++++++++++|++++|+||||.+++ +++|+++|++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~l~~~i~~~~~~v~~~~~~n~~G~~~~---l~~i~~l~~~ 168 (412)
T 2cb1_A 100 AAKGLFGQTIGLFGQVLSLMGVTVRYVDP--------EPEAVREALSAKTRAVFVETVANPALLVPD---LEALATLAEE 168 (412)
T ss_dssp EETTCCHHHHHHHHHTTTTTTCEEEEECS--------SHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHH
T ss_pred EeCCCchhHHHHHHHHHHHcCCEEEEECC--------CHHHHHHHhccCCeEEEEeCCCCCCccccc---HHHHHHHHHH
Confidence 9999998766553 458999998875 489999999989999999999999999998 8999999999
Q ss_pred CCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH---------------------
Q 012124 259 HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK--------------------- 317 (470)
Q Consensus 259 ~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~--------------------- 317 (470)
| |+++|+|++|..+.+.. .++ . .+.++++.|+||.++.+|.|+|++++.+
T Consensus 169 ~-~~~li~D~~~~~~~~~~---~~~---~--~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~ 239 (412)
T 2cb1_A 169 A-GVALVVDNTFGAAGALC---RPL---A--WGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIP 239 (412)
T ss_dssp H-TCEEEEECGGGTTTTSC---CGG---G--GTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------
T ss_pred c-CCEEEEECCCccccccC---Ccc---c--cCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccch
Confidence 9 99999999998752211 111 1 3567999999999977999999988543
Q ss_pred -------HHHHHHHHHh-hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec-CC---
Q 012124 318 -------HFVAACNKIQ-SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EP--- 385 (470)
Q Consensus 318 -------~~~~~l~~~~-~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~--- 385 (470)
++.+.++... .......++....++...++. +....++..++.+.+.+.|.+.+++... .|
T Consensus 240 ~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~-------l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~ 312 (412)
T 2cb1_A 240 WEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLET-------VALRVARMSETARFLAERLQGHPKVKALRYPGLP 312 (412)
T ss_dssp HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGG-------HHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTST
T ss_pred hhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCch-------HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCC
Confidence 3444444432 222233445444443333332 2334444567778888888888787633 22
Q ss_pred -------------CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC---------CCC---------
Q 012124 386 -------------QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD---------AFG--------- 434 (470)
Q Consensus 386 -------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~---------~f~--------- 434 (470)
..+.++.+.+ + +...+.+. +++.||.+ .++ .+.
T Consensus 313 ~~p~~~~~~~~~~~~~~iv~~~~-~-------------~~~~~~~~-l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~ 376 (412)
T 2cb1_A 313 EDPAHRNARKYLASGGPILTLDL-G-------------DLERASRF-LGAIRLLK-AANLGDARTLLVHPWTTTHSRLKE 376 (412)
T ss_dssp TCTTHHHHHHHCSSSCSEEEEEC-S-------------SHHHHHHH-HHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCH
T ss_pred CCccHHHHHHhCCCCceEEEEEe-C-------------CHHHHHHH-HHhCCeee-ecccCCCcceeecCcccccccCCH
Confidence 1233355666 2 34455554 44568988 764 110
Q ss_pred --------CCCcEEEEeec--CHHHHHHHHHHHH
Q 012124 435 --------DDTCIRISYAA--SLTTLQAAVERIK 458 (470)
Q Consensus 435 --------~~~~iRls~~~--~~~~i~~~l~~l~ 458 (470)
.++.+|+|++. ++++++.+++.|+
T Consensus 377 ~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~ 410 (412)
T 2cb1_A 377 EARLQAGVTPGLVRVSVGLEDPLDLLALFEEALE 410 (412)
T ss_dssp HHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHh
Confidence 04789999997 5567777666664
No 193
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.95 E-value=9.1e-27 Score=234.74 Aligned_cols=337 Identities=14% Similarity=0.104 Sum_probs=231.2
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcC-CCCCCC---CcCcHHHH--HHHH-HHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTP---NAGTLELR--SAIC-HKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-~~~y~~---~~g~~~lr--~~ia-~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
+.|+|..+... .++.+++++.+.+.+. ..+|+. ..|...++ ++++ +++.+.+|.+ . ..++++|+++++
T Consensus 46 ~~i~l~~~~~~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~--~-~~v~~~sGs~a~ 120 (447)
T 3h7f_A 46 DTLEMIASENF--VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE--F-ANVQPHSGAQAN 120 (447)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS--E-EECCCSSHHHHH
T ss_pred CceeEecCCCC--CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCC--c-eEEEeCCHHHHH
Confidence 45888654433 3888999988877532 223322 13555555 6666 7777777743 2 233377788899
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChH-H----HHHHcCCEEEEecCcCCCCCccCHHhHhhhcc-CCceEEEEcCCCCCcc
Q 012124 168 LQAVLAVCSPGDEVIIPAPFWVSYP-E----MARIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTG 241 (470)
Q Consensus 168 ~~~~~~l~~~gd~Vlv~~p~y~~~~-~----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG 241 (470)
..++.++++|||+|++++|+|.++. . .+...+..+++++++++ ++.+|++.|+++++ .++++|++++|+||++
T Consensus 121 ~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~i~~~~~~~~~~ 199 (447)
T 3h7f_A 121 AAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPA-THLIDMDAVRATALEFRPKVIIAGWSAYPRV 199 (447)
T ss_dssp HHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTT-TCSCCHHHHHHHHHHHCCSEEEEECSSCCSC
T ss_pred HHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcc-cCCcCHHHHHHHHHhcCCeEEEEcCCCCCCc
Confidence 9999999999999999999998732 1 12224567778887643 35699999999985 4788888889999987
Q ss_pred cCCCHHHHHHHHHHHHhCCCEEEEEecccc-ccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHH
Q 012124 242 SVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 320 (470)
Q Consensus 242 ~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~-~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~ 320 (470)
. + +++|.++|++| |++||+|++|. ++.+.+.....+ . ...+++.|+||.+ +|+|.||++++++++
T Consensus 200 ~--~---l~~i~~l~~~~-g~lli~Dea~~~g~~~~g~~~~~~---~---~~di~~~s~sK~l--~G~~gG~i~~~~~~~ 265 (447)
T 3h7f_A 200 L--D---FAAFRSIADEV-GAKLLVDMAHFAGLVAAGLHPSPV---P---HADVVSTTVHKTL--GGGRSGLIVGKQQYA 265 (447)
T ss_dssp C--C---HHHHHHHHHHH-TCEEEEECTTTHHHHHTTSSCCST---T---TCSEEEEESSGGG--CCCSCEEEEECGGGH
T ss_pred c--C---HHHHHHHHHHc-CCEEEEECCchhhhhcCCCCCCCC---C---CCcEEEecCCcCC--CCCCeEEEEECHHHH
Confidence 6 3 88999999999 99999999974 344433211111 1 2237899999987 578999999999999
Q ss_pred HHHHHHhhhccCCC-ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC----CCCeecC-CCceEEEeee
Q 012124 321 AACNKIQSQFTSGA-SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EGVKMSE-PQGAFYLFID 394 (470)
Q Consensus 321 ~~l~~~~~~~~~~~-~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~-~~~g~~~~~~ 394 (470)
+.+.........+. +...+.++..++... ...++++.++.+.++++.+.+.|.+. +|+.+.. +..++++|++
T Consensus 266 ~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~ 343 (447)
T 3h7f_A 266 KAINSAVFPGQQGGPLMHVIAGKAVALKIA--ATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVD 343 (447)
T ss_dssp HHHHHHHTTTTCSSCCHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEE
T ss_pred HHHhhhcCCcccCCccHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEE
Confidence 98887655444333 333345555555431 24467888888999999999999875 5777754 3455667888
Q ss_pred ccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEE----CCC--CCCCCCcEEEEeec------CHHHHHHHHHHHHHHHH
Q 012124 395 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV----PGD--AFGDDTCIRISYAA------SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~----pg~--~f~~~~~iRls~~~------~~~~i~~~l~~l~~~l~ 462 (470)
+... + .+...+. .++++.||.+. |+. ....++++|+++.. ++++++++++.|+++++
T Consensus 344 ~~~~-~---------~~~~~~~-~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~ 412 (447)
T 3h7f_A 344 LRDS-P---------LDGQAAE-DLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALA 412 (447)
T ss_dssp CTTS-S---------CCHHHHH-HHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred cCCC-C---------CCHHHHH-HHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence 7532 0 1344444 45566699998 662 22346789998752 68999999999999886
Q ss_pred hh
Q 012124 463 TL 464 (470)
Q Consensus 463 ~~ 464 (470)
+.
T Consensus 413 ~~ 414 (447)
T 3h7f_A 413 TG 414 (447)
T ss_dssp SG
T ss_pred cc
Confidence 53
No 194
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.95 E-value=1.3e-26 Score=228.24 Aligned_cols=308 Identities=16% Similarity=0.189 Sum_probs=221.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCeEEEcCCC
Q 012124 109 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPF 187 (470)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l-~~~gd~Vlv~~p~ 187 (470)
++.+.+++.+.+... .|.+..+..++|+.+++++. .+++++++|+++++..++.++ +++||+|+++.|+
T Consensus 16 ~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~~--------~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~ 85 (373)
T 3frk_A 16 EYEIKFKFEEIYKRN--WFILGDEDKKFEQEFADYCN--------VNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNT 85 (373)
T ss_dssp HHHHHHHHHHHHHHT--CCSSSHHHHHHHHHHHHHHT--------SSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTS
T ss_pred CHHHHHHHHHHHHCC--CccCCchHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCC
Confidence 567788888877654 36677889999999999973 248999999999999999999 8999999999999
Q ss_pred CCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEe
Q 012124 188 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 267 (470)
Q Consensus 188 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~D 267 (470)
|+++...++..|++++.++++++ ++.+|++.|++++++++++|+ ++||||...+ +++|.++|+++ |+++|+|
T Consensus 86 ~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~---l~~i~~l~~~~-~~~li~D 157 (373)
T 3frk_A 86 FIATALAVSYTGAKPIFVEPDIR-TYNIDPSLIESAITEKTKAII---AVHLYGQPAD---MDEIKRIAKKY-NLKLIED 157 (373)
T ss_dssp CTHHHHHHHHHSCEEEEECEETT-TTEECGGGTGGGCCTTEEEEE---EECCTTCCCC---HHHHHHHHHHH-TCEEEEE
T ss_pred cHHHHHHHHHcCCEEEEEecccc-ccCcCHHHHHHhcCCCCeEEE---EECCCcCccc---HHHHHHHHHHc-CCEEEEE
Confidence 99999999999999999999753 467999999999998898887 7789999988 78899999999 9999999
Q ss_pred ccccccc-cCCCCcccccccCCCCCceEEEeccC--cccccc-cceeeEEEcC-HHHHHHHHHHhhhc------------
Q 012124 268 EIYEHII-YAPATHTSFASLPGMWERTLTVNGFS--KAFAMT-GWRLGYIAGP-KHFVAACNKIQSQF------------ 330 (470)
Q Consensus 268 d~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~S~s--K~~~~~-G~r~G~~~~~-~~~~~~l~~~~~~~------------ 330 (470)
++|+... +++. .+..+ ..+.+.||+ |.++ + | +.|+++++ +++++.+.......
T Consensus 158 ~a~~~g~~~~~~---~~~~~-----~d~~~~S~~~~K~l~-~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~ 227 (373)
T 3frk_A 158 AAQAHGSLYKGM---KVGSL-----GDAAGFSFYPAKNLG-SLG-DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGF 227 (373)
T ss_dssp CTTCTTCEETTE---ETTSS-----SSEEEEECCTTSSSC-CSS-SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCC
T ss_pred CCcccCCEECCE---ecccc-----ccEEEEeCcCCCccC-ccc-eeEEEEeCCHHHHHHHHHHHhcCcccCCccccccc
Confidence 9998632 2221 11111 237788877 9886 4 5 47888876 56777777655421
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC-CCceEEEeeeccCccCCcccCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKI 409 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~ 409 (470)
++..+.+...+....+ +.+++..++.++..+.+.+.|++++ +.+.. +.+....|..++-..
T Consensus 228 ~~~~~~~~aa~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~---------- 289 (373)
T 3frk_A 228 NSRLDELQAGFLRVKL-------KYLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRS---------- 289 (373)
T ss_dssp BCCCCHHHHHHHHHHH-------HTHHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEE----------
T ss_pred cCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEe----------
Confidence 1223444333332222 2345566666777888888888874 55432 222222222221110
Q ss_pred CCHHHHHHHHHHcCCEEEECCCCCC-----------C------------CCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012124 410 ENSESLCRYLLDKAQVALVPGDAFG-----------D------------DTCIRISYAA--SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 410 ~~~~~l~~~L~~~~gI~v~pg~~f~-----------~------------~~~iRls~~~--~~~~i~~~l~~l~~~l~~ 463 (470)
.+..++.+.|.++ ||.+.++.... . .+.+|+++.. +++|++..++.|+++..+
T Consensus 290 ~~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~ 367 (373)
T 3frk_A 290 EKRDELQKYLNNN-GIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLE 367 (373)
T ss_dssp SSHHHHHHHHHHT-TBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred CCHHHHHHHHHHC-CCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence 1577888888766 99998765210 0 1479999986 999999999998876543
No 195
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.95 E-value=2.9e-26 Score=229.18 Aligned_cols=283 Identities=14% Similarity=0.163 Sum_probs=204.9
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCCEEEEecCc
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTR 208 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~ 208 (470)
..++++.+++++ |. ++.|++++|+ +++..++.+++++||+|++++|+|+++... ++..|++++.++.+
T Consensus 116 ~~~l~~~lA~l~----g~---~~~v~~~sG~-~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~ 187 (445)
T 1qgn_A 116 TVVLEEKISALE----GA---ESTLLMASGM-CASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA 187 (445)
T ss_dssp HHHHHHHHHHHH----TC---SEEEEESCHH-HHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS
T ss_pred HHHHHHHHHHHh----CC---CcEEEeCCHH-HHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC
Confidence 346777777765 43 2456666665 999999999999999999999999987764 45689999999862
Q ss_pred CCCCCccCHHhHhhhccCCc-eEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccC
Q 012124 209 ISENFLLDPKVLESKLTEKS-RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 287 (470)
Q Consensus 209 ~~~~~~~d~~~l~~~l~~~~-~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~ 287 (470)
|++.|++++++++ ++|++++|+||||.+++ +++|+++|+++ |+++|+|++|....+. .++ .
T Consensus 188 -------d~~~l~~ai~~~tv~lV~le~p~NptG~v~d---l~~I~~la~~~-g~~livD~a~~~~~~~----~~~-~-- 249 (445)
T 1qgn_A 188 -------DVGALELALNQKKVNLFFTESPTNPFLRCVD---IELVSKLCHEK-GALVCIDGTFATPLNQ----KAL-A-- 249 (445)
T ss_dssp -------CHHHHHHHHHHSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTCTTTC----CTT-T--
T ss_pred -------CHHHHHHHhccCCCCEEEEeCCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCCcccccC----Ccc-c--
Confidence 8999999998888 99999999999999999 88999999999 9999999999864321 111 1
Q ss_pred CCCCceEEEeccCccccccc-ceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 012124 288 GMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 366 (470)
Q Consensus 288 ~~~~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~ 366 (470)
.+..+++.|+||.++..| .++||+++++++++.+...........+++...++...++. +....+.+.++
T Consensus 250 --~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~-------l~~r~~~~~~~ 320 (445)
T 1qgn_A 250 --LGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKT-------LHLRVQQQNST 320 (445)
T ss_dssp --TTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGG-------HHHHHHHHHHH
T ss_pred --cCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHHH-------HHHHHHHHHHH
Confidence 245689999999997333 47999999999999888766655555666665554444432 33344555666
Q ss_pred HHHHHHHhccCCCC-eecCC----------------CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC
Q 012124 367 RDFLVKSFGELEGV-KMSEP----------------QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 429 (470)
Q Consensus 367 ~~~l~~~L~~~~g~-~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~p 429 (470)
++.+.+.|++.|++ .+..| ..|.++++.+++.. .+...+.+.|. ..++.+..
T Consensus 321 a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~----------~~~~~~l~~l~-~~~i~~s~ 389 (445)
T 1qgn_A 321 ALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL----------LTTAKFVDALK-IPYIAPSF 389 (445)
T ss_dssp HHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH----------HHHHHHHHHCS-SSEECSCC
T ss_pred HHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCH----------HHHHHHHHhCC-CceEeccC
Confidence 78888888888776 44333 12444777886420 02345555432 23677777
Q ss_pred CCCCC----------------------C-CCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 430 GDAFG----------------------D-DTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 430 g~~f~----------------------~-~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
|..+. . ++.||||++. |+++++++.|++++++
T Consensus 390 G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG~--Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 390 GGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV--EDFDDLKADILQALDS 444 (445)
T ss_dssp CSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS--SCHHHHHHHHHHHHHH
T ss_pred CCCceeeecccccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHhh
Confidence 76431 1 3689999994 4688888888888764
No 196
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.95 E-value=4.4e-26 Score=223.86 Aligned_cols=302 Identities=18% Similarity=0.239 Sum_probs=221.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCeEEEcCCC
Q 012124 109 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPF 187 (470)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l-~~~gd~Vlv~~p~ 187 (470)
++++.+++.+.+... .|.+..+..++++.+++++. .+++++++|+++++..++.++ +++||+|+++.|+
T Consensus 15 ~~~v~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~~--------~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~ 84 (367)
T 3nyt_A 15 KDKIDAGIQRVLRHG--QYILGPEVTELEDRLADFVG--------AKYCISCANGTDALQIVQMALGVGPGDEVITPGFT 84 (367)
T ss_dssp HHHHHHHHHHHHHHC--CCSSCHHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSS
T ss_pred CHHHHHHHHHHHhcC--CccCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCc
Confidence 567788888877654 45577788999999999973 248999999999999999999 8999999999999
Q ss_pred CCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEe
Q 012124 188 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 267 (470)
Q Consensus 188 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~D 267 (470)
|+.+...++..|++++.++++++ .+.+|++.+++++++++++|+ |+||||...+ +++|.++|+++ |++||+|
T Consensus 85 ~~~~~~~~~~~G~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~---~~~i~~la~~~-~~~li~D 156 (367)
T 3nyt_A 85 YVATAETVALLGAKPVYVDIDPR-TYNLDPQLLEAAITPRTKAII---PVSLYGQCAD---FDAINAIASKY-GIPVIED 156 (367)
T ss_dssp CTHHHHHHHHTTCEEEEECBCTT-TCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCC---HHHHHHHHHHT-TCCBEEE
T ss_pred cHHHHHHHHHcCCEEEEEecCCc-cCCcCHHHHHHhcCcCCcEEE---eeCCccChhh---HHHHHHHHHHc-CCEEEEE
Confidence 99999999999999999999754 367999999999998898887 8889998888 88899999999 9999999
Q ss_pred cccccc-ccCCCCcccccccCCCCCceEEEecc--CcccccccceeeEEEc-CHHHHHHHHHHhhh------------cc
Q 012124 268 EIYEHI-IYAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAG-PKHFVAACNKIQSQ------------FT 331 (470)
Q Consensus 268 d~~~~~-~~~~~~~~~~~~~~~~~~~~i~i~S~--sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~------------~~ 331 (470)
++|+.. .+.+. .+..+ + .+++.|| +|.++.+|. .|+++. ++++.+.+...... .+
T Consensus 157 ~a~~~g~~~~~~---~~~~~----~-di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~ 227 (367)
T 3nyt_A 157 AAQSFGASYKGK---RSCNL----S-TVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVN 227 (367)
T ss_dssp CTTTTTCEETTE---ETTSS----S-SEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCB
T ss_pred CccccCCeECCe---eccCC----C-CEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcC
Confidence 999852 23221 11111 1 4888887 899984476 899888 47788887775542 23
Q ss_pred CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC-CCce---EE-EeeeccCccCCcccCC
Q 012124 332 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGA---FY-LFIDFSTYYGSEAEGF 406 (470)
Q Consensus 332 ~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g---~~-~~~~~~~~~~~~~~~~ 406 (470)
+..+.+.+.++...++. +++..++.++..+.+.+.|+++ ++.+.. +.+. ++ +++.++
T Consensus 228 ~~~~~~~aa~~~~~l~~-------~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~---------- 289 (367)
T 3nyt_A 228 SRLDTLQAAILLPKLEI-------FEEEIALRQKVAAEYDLSLKQV-GIGTPFIEVNNISVYAQYTVRMD---------- 289 (367)
T ss_dssp CCCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCTTEECCCSSEEEECS----------
T ss_pred CCccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhccC-CeeccCCCCCCceeeEEEEEEeC----------
Confidence 45666666655555543 2344455556666777777766 444322 1221 11 223332
Q ss_pred CCCCCHHHHHHHHHHcCCEEEECCCC--------CC-C-----------CCcEEEEeec--CHHHHHHHHHHHHHH
Q 012124 407 GKIENSESLCRYLLDKAQVALVPGDA--------FG-D-----------DTCIRISYAA--SLTTLQAAVERIKKG 460 (470)
Q Consensus 407 ~~~~~~~~l~~~L~~~~gI~v~pg~~--------f~-~-----------~~~iRls~~~--~~~~i~~~l~~l~~~ 460 (470)
+..++.+.|.++ ||.+.++.. |. . ...+||++.. ++++++..++.|++.
T Consensus 290 ----~~~~l~~~L~~~-GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 290 ----NRESVQASLKAA-GVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp ----SHHHHHHHHHHH-TCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred ----CHHHHHHHHHHC-CCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 567888888766 998887643 11 0 1368999886 899999999888654
No 197
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.95 E-value=8.1e-27 Score=237.73 Aligned_cols=331 Identities=12% Similarity=0.067 Sum_probs=237.3
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCC-------CCcEEEecChHHHHHHHHHHhcCC----
Q 012124 109 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYT-------PDQILVSNGAKQSILQAVLAVCSP---- 177 (470)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~-------~~~i~it~g~~~al~~~~~~l~~~---- 177 (470)
+..+.+.+...+......|....+..++++.+++++.+.+|.+.+ ..++++|+|+++++..++.++..+
T Consensus 87 ~~~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~ 166 (486)
T 1js3_A 87 PAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRR 166 (486)
T ss_dssp HHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhh
Confidence 455777888887666667777777899999999999999997532 357899999999999888765321
Q ss_pred -----CC--------e--EEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCce------EEEEcCC
Q 012124 178 -----GD--------E--VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSR------LLILCSP 236 (470)
Q Consensus 178 -----gd--------~--Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~------~i~l~~p 236 (470)
|| . |++++++|+++...++..|++++.+|++ +++.+|++.|+++++++++ +|++++|
T Consensus 167 ~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d--~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~ 244 (486)
T 1js3_A 167 LQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVATLG 244 (486)
T ss_dssp HHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBS
T ss_pred hhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecC--CCCCCCHHHHHHHHHHHHhCCCCceEEEEeCC
Confidence 43 3 7889999999999999999999999985 4567999999999976553 7788999
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccc-ccccCCCCCceEEEeccCcccccccceeeEEEc
Q 012124 237 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS-FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 315 (470)
Q Consensus 237 ~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~ 315 (470)
+||||.+-+ +++|+++|++| |+++++|++|+.+.+....... +..+. +-..++.+++|.++.| +++||+++
T Consensus 245 ~n~tG~~~~---l~~I~~la~~~-~~~lhvD~a~g~~~~~~~~~~~~~~g~~---~adsi~~~~hK~~~~p-~~~G~l~~ 316 (486)
T 1js3_A 245 TTSCCSFDN---LLEVGPICHEE-DIWLHVDAAYAGSAFICPEFRHLLNGVE---FADSFNFNPHKWLLVN-FDCSAMWV 316 (486)
T ss_dssp CTTTCCBCC---HHHHHHHHHHT-TCEEEEECTTGGGGGGSTTTGGGGTTGG---GCSEEEECHHHHSSCC-SSCEEEEE
T ss_pred CCCCCCCCC---HHHHHHHHHHc-CCEEEEehhhHHHHHHCHHHHHHhcCcc---ccCeeEEchhhhcCCC-cceEEEEE
Confidence 999999877 99999999999 9999999999976543211111 11221 2235567899999744 89999998
Q ss_pred CHH-H-HHHHHHHhhhc--------------------cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 012124 316 PKH-F-VAACNKIQSQF--------------------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 373 (470)
Q Consensus 316 ~~~-~-~~~l~~~~~~~--------------------~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (470)
+++ . .+.+....... +.....+.+.++...+. .++++++.+++.++++++.+.
T Consensus 317 ~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~ 391 (486)
T 1js3_A 317 KRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYG-----VKGLQAYIRKHVQLSHEFEAF 391 (486)
T ss_dssp SCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHH
Confidence 643 2 33321100000 00123445555554442 567888888899999999999
Q ss_pred hccCCCCeecC-CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHH
Q 012124 374 FGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTT 449 (470)
Q Consensus 374 L~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~---~~~~ 449 (470)
|++++|+++.. |..+++.| +++..- ....++.++|.+++.+.+.+ ..|...+++|++++. ++++
T Consensus 392 L~~~~~~~~~~~~~~~~v~f-~~~~~~----------~~~~~l~~~L~~~g~~~~~~-~~~~~~~~lRi~~~~~~~t~~d 459 (486)
T 1js3_A 392 VLQDPRFEVCAEVTLGLVCF-RLKGSD----------GLNEALLERINSARKIHLVP-CRLRGQFVLRFAICSRKVESGH 459 (486)
T ss_dssp HHHCTTEEECSCCCSSEEEE-EESSCH----------HHHHHHHHHHHHHTSCBCEE-EEETTEEEEEEECCCTTCCHHH
T ss_pred HhcCCCeEEeCCCceeEEEE-EecChH----------HHHHHHHHHHHhcCCEEEEE-EEECCEEEEEEEeCCCCCCHHH
Confidence 99988998864 56666444 554210 02467888887773343343 335446799999864 7899
Q ss_pred HHHHHHHHHHHHHhhCC
Q 012124 450 LQAAVERIKKGLLTLRP 466 (470)
Q Consensus 450 i~~~l~~l~~~l~~~~~ 466 (470)
+++++++|+++++++..
T Consensus 460 i~~~~~~l~~~~~~~~~ 476 (486)
T 1js3_A 460 VRLAWEHIRGLAAELLA 476 (486)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999877644
No 198
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.95 E-value=2.2e-26 Score=227.78 Aligned_cols=285 Identities=14% Similarity=0.114 Sum_probs=200.2
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEE
Q 012124 129 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVI 204 (470)
Q Consensus 129 ~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~ 204 (470)
+..+..++|+.+++++ |. ++++++++++++++++++ ++++||+|++++|+|++... .++..|++++.
T Consensus 53 ~~~~~~~lr~~la~~~----g~----~~~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~ 123 (393)
T 1n8p_A 53 QNPNRENLERAVAALE----NA----QYGLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSF 123 (393)
T ss_dssp CCHHHHHHHHHHHHHT----TC----SEEEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEE
T ss_pred CChhHHHHHHHHHHHh----CC----CcEEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEE
Confidence 3445678899998885 32 245555666899999999 88999999999999986554 34567999999
Q ss_pred ecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC---CEEEEEeccccccccCCCCcc
Q 012124 205 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP---RLLVLSDEIYEHIIYAPATHT 281 (470)
Q Consensus 205 v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~---~~~iI~Dd~~~~~~~~~~~~~ 281 (470)
++++ | +.+++++++++++|++++|+||||.+++ +++|.++|++++ |+++|+|++|..+.+.
T Consensus 124 v~~~-------d-~~l~~~i~~~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~~----- 187 (393)
T 1n8p_A 124 TNDL-------L-NDLPQLIKENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS----- 187 (393)
T ss_dssp ESSH-------H-HHHHHHSCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-----
T ss_pred eCCC-------h-HHHHHhcccCceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccccC-----
Confidence 9873 7 8899999889999999999999999998 888899998873 6999999999987653
Q ss_pred cccccCCCCCceEEEeccCccccccccee-eEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHH
Q 012124 282 SFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 359 (470)
Q Consensus 282 ~~~~~~~~~~~~i~i~S~sK~~~~~G~r~-G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~ 359 (470)
....+ +.++++.|+||.+|.+|+|+ ||+++ ++++++.+...........++..+.++...++. +...
T Consensus 188 ~~~~~----~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~-------~~~~ 256 (393)
T 1n8p_A 188 NPLNF----GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKT-------LHLR 256 (393)
T ss_dssp CGGGG----TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-------HHHH
T ss_pred CHHHc----CCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccch-------HHHH
Confidence 11222 46699999999999889999 99998 588999888776655556677766665555543 2333
Q ss_pred HHHHHHHHHHHHHHhccCCC-Ce-ecCC---------------C--c-eEEEeeeccCccCCcccCCCCCCCHHHHHHHH
Q 012124 360 VKAFRERRDFLVKSFGELEG-VK-MSEP---------------Q--G-AFYLFIDFSTYYGSEAEGFGKIENSESLCRYL 419 (470)
Q Consensus 360 ~~~~~~~~~~l~~~L~~~~g-~~-~~~~---------------~--~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 419 (470)
.+...++++.+.+.|.+.+. +. +..| . . +..+++.+++.. .+...+...|
T Consensus 257 ~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~----------~~~~~~l~~l 326 (393)
T 1n8p_A 257 VRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGA----------EAASKFASST 326 (393)
T ss_dssp HHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCH----------HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcH----------HHHHHHHhhC
Confidence 44445566666677766543 32 1111 1 1 445788886420 0344555544
Q ss_pred HHcCCEEEECCC----------CC------------C-CCCcEEEEeec--CHHHHHHHHHHHHHH
Q 012124 420 LDKAQVALVPGD----------AF------------G-DDTCIRISYAA--SLTTLQAAVERIKKG 460 (470)
Q Consensus 420 ~~~~gI~v~pg~----------~f------------~-~~~~iRls~~~--~~~~i~~~l~~l~~~ 460 (470)
+..++.+..|+ .+ + .++.||+|++. ++++++.+.+.|+++
T Consensus 327 -~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 327 -RLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp -SSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred -CcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 23345444332 22 1 13689999998 556677777766654
No 199
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.95 E-value=4.1e-25 Score=222.07 Aligned_cols=319 Identities=15% Similarity=0.141 Sum_probs=223.2
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
+++|.|+ .|++ ++++.+++.+++... .|.+..+..++|+++++++. . +++++++++++++.+++.+
T Consensus 31 ~~~i~~~--~~~~--~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~g----~----~~~i~~~sGt~a~~~al~~ 96 (437)
T 3bb8_A 31 KSVVPPS--GKVI--GTKELQLMVEASLDG--WLTTGRFNDAFEKKLGEYLG----V----PYVLTTTSGSSANLLALTA 96 (437)
T ss_dssp TSCBCSC--CCCC--CHHHHHHHHHHHHHC--CCBSCHHHHHHHHHHHHHHT----C----SEEEEESCHHHHHHHHHHH
T ss_pred CccccCC--CCCC--CHHHHHHHHHHHHcC--CcCCChHHHHHHHHHHHHHC----C----CcEEEeCCHHHHHHHHHHH
Confidence 3445553 3332 467788888877653 35567788999999999973 2 2677788888999999999
Q ss_pred h---------cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcC-CCCCcccC
Q 012124 174 V---------CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS-PSNPTGSV 243 (470)
Q Consensus 174 l---------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~-p~nPtG~~ 243 (470)
+ +++||+|+++.|+|+.+...++..|++++.++++++ ++.+|++.|++++++++++|++++ ++||
T Consensus 97 l~~~~~~~~~~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~g~~---- 171 (437)
T 3bb8_A 97 LTSPKLGVRALKPGDEVITVAAGFPTTVNPTIQNGLIPVFVDVDIP-TYNVNASLIEAAVSDKTKAIMIAHTLGNL---- 171 (437)
T ss_dssp TTCGGGGGGSCCTTCEEEECSSSCHHHHHHHHHTTCEEEECCEETT-TTEECGGGHHHHCCTTEEEEEEECGGGCC----
T ss_pred hhhcccccccCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEeccCc-cCCcCHHHHHHhcCCCCeEEEEeCCCCCh----
Confidence 8 789999999999999999999999999999998753 467999999999988999998864 4444
Q ss_pred CCHHHHHHHHHHHHhCCCEEEEEeccccccc-cCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHH
Q 012124 244 YPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 322 (470)
Q Consensus 244 ~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~ 322 (470)
.+ +++|.++|+++ |+++|+|++|+... +++ ..+.. . ..+++.||+|..+++|.+.||++++++.+..
T Consensus 172 ~~---~~~i~~l~~~~-~~~li~D~a~~~g~~~~~------~~~~~-~-~d~~~~s~~~~k~l~~g~gg~~~~~~~~~~~ 239 (437)
T 3bb8_A 172 FD---LAEVRRVADKY-NLWLIEDCCDALGSTYDG------KMAGT-F-GDIGTVSFYPAKHITMGEGGAVFTQSAELKS 239 (437)
T ss_dssp CC---HHHHHHHHHHH-TCEEEEECTTCTTCEETT------EETTS-S-SSEEEEECSTTSSSCCSSCEEEEESCHHHHH
T ss_pred hc---HHHHHHHHHHc-CCEEEEECccccCceECC------eeccc-c-cCEEEEECcCCcCCCCCCeEEEEeCCHHHHH
Confidence 55 88999999999 99999999998432 211 11211 1 1277789988888899999999998655443
Q ss_pred -HHHHhhhc---------------------------------------cCCCChHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012124 323 -CNKIQSQF---------------------------------------TSGASSISQKAGVAALGLGYAGGEVVSKMVKA 362 (470)
Q Consensus 323 -l~~~~~~~---------------------------------------~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 362 (470)
+....... +...+.+.+.++...|+. +.+..++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~-------~~~~~~~ 312 (437)
T 3bb8_A 240 IIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQLER-------IEEFVEK 312 (437)
T ss_dssp HHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHHHHHHHH-------HHHHHHH
Confidence 33221100 111235555445555542 1333344
Q ss_pred HHHHHHHHHHHhccCCCCeecCCC-----ce---EEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC
Q 012124 363 FRERRDFLVKSFGELEGVKMSEPQ-----GA---FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 434 (470)
Q Consensus 363 ~~~~~~~l~~~L~~~~g~~~~~~~-----~g---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~ 434 (470)
.+++.+++.+.|++++|+.+.+.. .+ +.+.++.+... +..++.+.|.++ ||.+.++....
T Consensus 313 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~L~~~-GI~v~~~~~~~ 380 (437)
T 3bb8_A 313 RKANFKYLKDALQSCADFIELPEATENSDPSWFGFPITLKEDSGV-----------SRIDLVKFLDEA-KVGTRLLFAGN 380 (437)
T ss_dssp HHHHHHHHHHHGGGGTTTEECCCCCTTEECCCSSEEEEECGGGSS-----------CHHHHHHHHHHT-TBCCBCCTTSS
T ss_pred HHHHHHHHHHHhhccCCccccCCCCCCCceeeEEEEEEECCcCcC-----------cHHHHHHHHHHC-CCceeccCCcc
Confidence 466778888999888776554311 12 33334544221 677888888765 99998875410
Q ss_pred ---C---------------------CCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012124 435 ---D---------------------DTCIRISYAA--SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 435 ---~---------------------~~~iRls~~~--~~~~i~~~l~~l~~~l~ 462 (470)
. .+.+||++.. ++++++.+++.|+++++
T Consensus 381 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 381 LTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp GGGSGGGSSCCCEECSCCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHTT
T ss_pred cccCchhhccCccccCCCcHHHHHhcCEEEecCCCCCCHHHHHHHHHHHHHHHc
Confidence 0 0149999887 89999999999988764
No 200
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.95 E-value=1.4e-25 Score=229.56 Aligned_cols=341 Identities=14% Similarity=0.121 Sum_probs=238.4
Q ss_pred hHHHH-HHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcC--------CC-
Q 012124 109 PVLIA-EAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS--------PG- 178 (470)
Q Consensus 109 ~~~~~-~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~--------~g- 178 (470)
|..+. +.+...+......|....+..++++.+.+++.+.+|.+.+++++++|+|+++++..++.++.. +|
T Consensus 105 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~ 184 (504)
T 2okj_A 105 IIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGM 184 (504)
T ss_dssp HHHHHHHHHHHHHCCBSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCG
T ss_pred HHHHHHHHHHHhhccCCCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCc
Confidence 44443 445544544455676667778889999999999889754478999999999999999888753 56
Q ss_pred ----C-eEEEcCCCCCChHHHHHHcCC---EEEEecCcCCCCCccCHHhHhhhccC------CceEEEEcCCCCCcccCC
Q 012124 179 ----D-EVIIPAPFWVSYPEMARIADA---TPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVY 244 (470)
Q Consensus 179 ----d-~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~~p~nPtG~~~ 244 (470)
+ .|++++++|+++...++..|. +++.+|.+ .++.+|++.|++++++ ++++|++++++||||.+.
T Consensus 185 ~~~~~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~ 262 (504)
T 2okj_A 185 AAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFD 262 (504)
T ss_dssp GGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBC
T ss_pred cccCCeEEEECCcchHHHHHHHHHcCCCcccEEEEecC--CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcC
Confidence 6 789999999999999998887 89999986 3567999999999965 588899999999999998
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH-HHHHHH
Q 012124 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAAC 323 (470)
Q Consensus 245 s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~-~~~~~l 323 (470)
+ +++|+++|++| |+|+++|++|+.+.+....... .+.+.....+++.|++|.++.| .++|++++++ ++++..
T Consensus 263 ~---l~~I~~la~~~-g~~lhvD~a~~~~~~~~~~~~~--~~~g~~~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~~~ 335 (504)
T 2okj_A 263 P---IQEIADICEKY-NLWLHVDAAWGGGLLMSRKHRH--KLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGC 335 (504)
T ss_dssp C---HHHHHHHHHHH-TCEEEEEETTGGGGGGCTTTGG--GGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHH
T ss_pred C---HHHHHHHHHHc-CCEEEEehhhhhHHHhCHhhHh--hcCCcccCCEEEECchhhcCCC-cceEEEEEECHHHHHHH
Confidence 8 88999999999 9999999999987653221111 1221113347788999999744 7899999876 455542
Q ss_pred HHHhhhccC---------------------CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCee
Q 012124 324 NKIQSQFTS---------------------GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 382 (470)
Q Consensus 324 ~~~~~~~~~---------------------~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 382 (470)
......+.. ....+.+.++..++. .+.++++.++..++++++.+.|++++|+++
T Consensus 336 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~ 410 (504)
T 2okj_A 336 NQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG-----TVGFENQINKCLELAEYLYAKIKNREEFEM 410 (504)
T ss_dssp HCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred hcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 211111110 013455555555553 456778888889999999999999889988
Q ss_pred cC---CCceEEEeeeccCccCCcccC----CCCCCCHHHHHHHHHHcCCEEEECCCCCCC-CCcEEEEee---cCHHHHH
Q 012124 383 SE---PQGAFYLFIDFSTYYGSEAEG----FGKIENSESLCRYLLDKAQVALVPGDAFGD-DTCIRISYA---ASLTTLQ 451 (470)
Q Consensus 383 ~~---~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-~~~iRls~~---~~~~~i~ 451 (470)
.. |..+++.|...|......... ........++.+.|.+++.+.+.++ .+.. .+++|++++ .++++++
T Consensus 411 ~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~-~~~~~~~~lRis~~~~~~t~edi~ 489 (504)
T 2okj_A 411 VFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQ-PQGDKANFFRMVISNPAATQSDID 489 (504)
T ss_dssp SSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEE-EETTEEEEEEECCCCTTCCHHHHH
T ss_pred EecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEee-EECCceEEEEEEeCCCCCCHHHHH
Confidence 74 666776654444310000000 0000013567788887732444433 2322 368999997 3889999
Q ss_pred HHHHHHHHHHHhh
Q 012124 452 AAVERIKKGLLTL 464 (470)
Q Consensus 452 ~~l~~l~~~l~~~ 464 (470)
.++++|+++++++
T Consensus 490 ~~~~~l~~~~~~~ 502 (504)
T 2okj_A 490 FLIEEIERLGQDL 502 (504)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988654
No 201
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.95 E-value=1.6e-25 Score=228.40 Aligned_cols=335 Identities=13% Similarity=0.060 Sum_probs=240.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEE---EecChHHHHHHHHHHhcCC------
Q 012124 107 DTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL---VSNGAKQSILQAVLAVCSP------ 177 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~---it~g~~~al~~~~~~l~~~------ 177 (470)
.+++.+.+++.+.+......|...++..++++.+.+++.+.+|.+.++++++ +|+|+++++.+++.++..+
T Consensus 67 ~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~ 146 (502)
T 3hbx_A 67 WMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK 146 (502)
T ss_dssp CCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHH
Confidence 3467888888888766555565666788999999999999999865466554 4899999999998887655
Q ss_pred --CC-----eEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHH
Q 012124 178 --GD-----EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 250 (470)
Q Consensus 178 --gd-----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~ 250 (470)
|| +|++++++|..+...++..|++++.+|++. +++.+|++.|++++++++++|++++|+||||.+.+ ++
T Consensus 147 ~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~---l~ 222 (502)
T 3hbx_A 147 AEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSE-GYYVMDPQQAVDMVDENTICVAAILGSTLNGEFED---VK 222 (502)
T ss_dssp HTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBT-TBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCC---HH
T ss_pred hcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecCC-CcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccC---HH
Confidence 77 999999999999999999999999999864 34679999999999999999999999999999999 77
Q ss_pred HHHHHHHhCC-----CEEEEEecccccccc---CCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC-HHHHH
Q 012124 251 EIARIVAKHP-----RLLVLSDEIYEHIIY---APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVA 321 (470)
Q Consensus 251 ~l~~~~~~~~-----~~~iI~Dd~~~~~~~---~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~-~~~~~ 321 (470)
+|.++|++++ |+++++|++|+.+.. .+.... .+. ..+-.++..|.+|.++ .+.++||++.. ++.+.
T Consensus 223 ~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~---~~~-~~~~D~v~~s~hK~l~-~p~g~G~~~~~~~~~l~ 297 (502)
T 3hbx_A 223 LLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEW---DFR-LPLVKSINVSGHKYGL-VYAGIGWVIWRNKEDLP 297 (502)
T ss_dssp HHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCC---STT-STTEEEEEEETTTTTC-CCSSCEEEEESSGGGSC
T ss_pred HHHHHHHHhhhccCCCCeEEEECCccchhhhhhCccccc---ccC-CCCceEEEECcccccC-CCCCeEEEEEeCHHHhh
Confidence 7777777651 799999999986541 111111 111 1244567788899874 77889988764 33332
Q ss_pred HHHHHhhhc----------cCCC---ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC--C
Q 012124 322 ACNKIQSQF----------TSGA---SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP--Q 386 (470)
Q Consensus 322 ~l~~~~~~~----------~~~~---~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~--~ 386 (470)
........+ .+.. ..+.+.++...+. .+.+.++.++..++++++.+.|++++++++..+ .
T Consensus 298 ~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~ 372 (502)
T 3hbx_A 298 EELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG-----HEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEG 372 (502)
T ss_dssp GGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSS
T ss_pred HHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 111110001 0111 2233444444332 345677778888888899999999977888755 4
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC---CCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF---GDDTCIRISYAA--SLTTLQAAVERIKKGL 461 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f---~~~~~iRls~~~--~~~~i~~~l~~l~~~l 461 (470)
.++ +++++++.. ..+..++.+.|.++ ||.+...... ....++|++++. +.++++.+++.|++++
T Consensus 373 ~~~-v~f~~~~~~---------~~~~~~l~~~L~~~-Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l 441 (502)
T 3hbx_A 373 VPL-VAFSLKDSS---------CHTEFEISDMLRRY-GWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVM 441 (502)
T ss_dssp SSE-EEEEESSCS---------SCCHHHHHHHHHTT-TCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred ceE-EEEEecCCC---------cCCHHHHHHHHHhC-CcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 444 666775420 01556888888765 8876432221 123589999986 8899999999999998
Q ss_pred HhhCC
Q 012124 462 LTLRP 466 (470)
Q Consensus 462 ~~~~~ 466 (470)
++++.
T Consensus 442 ~~l~~ 446 (502)
T 3hbx_A 442 RELDE 446 (502)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87643
No 202
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.94 E-value=2.3e-25 Score=222.09 Aligned_cols=282 Identities=16% Similarity=0.130 Sum_probs=195.3
Q ss_pred CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEEe
Q 012124 130 NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVIL 205 (470)
Q Consensus 130 ~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v 205 (470)
.+...+|++.+++++ |. +..++++++++++.+++.+++++||+|++++|+|.++.. .++..|++++.+
T Consensus 81 ~p~~~~le~~lA~l~----g~----~~~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v 152 (430)
T 3ri6_A 81 NPTVEDLEQRLKNLT----GA----LGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFV 152 (430)
T ss_dssp CHHHHHHHHHHHHHH----TC----SEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHHHHH----CC----CcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEe
Confidence 344566777777664 42 335666666799999999999999999999999998887 667899999999
Q ss_pred cCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccc
Q 012124 206 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS 285 (470)
Q Consensus 206 ~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~ 285 (470)
+.+ |++.+++++++++++|++++|+||||.+++ +++|+++|+++ |+++|+|++|....+. .+. .
T Consensus 153 ~~~-------d~~~l~~ai~~~t~~v~~e~p~NptG~~~d---l~~i~~la~~~-g~~livD~a~~~~~~~----~~~-~ 216 (430)
T 3ri6_A 153 DVM-------DSLAVEHACDETTKLLFLETISNPQLQVAD---LEALSKVVHAK-GIPLVVDTTMTPPYLL----EAK-R 216 (430)
T ss_dssp CTT-------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTT-TCCEEEECTTSCTTTC----CGG-G
T ss_pred CCC-------CHHHHHHhhCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCcccccC----ChH-H
Confidence 863 899999999999999999999999999998 78899999999 9999999999853321 111 1
Q ss_pred cCCCCCceEEEeccCcccccccceeeEEEc---CHHH------------------HHHHHH-HhhhccCCCChHHHHHHH
Q 012124 286 LPGMWERTLTVNGFSKAFAMTGWRLGYIAG---PKHF------------------VAACNK-IQSQFTSGASSISQKAGV 343 (470)
Q Consensus 286 ~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~---~~~~------------------~~~l~~-~~~~~~~~~~~~~q~a~~ 343 (470)
.+..+++.|+||.++.+|..+|.+++ +..+ +..+.. .........+++....+.
T Consensus 217 ----~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l 292 (430)
T 3ri6_A 217 ----LGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAYLQS 292 (430)
T ss_dssp ----GTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHH
T ss_pred ----cCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 24569999999999756655554443 2222 222221 222333344554433332
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCe-ecCCC----------------ceEEEeeeccCccCCcccCC
Q 012124 344 AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQ----------------GAFYLFIDFSTYYGSEAEGF 406 (470)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~----------------~g~~~~~~~~~~~~~~~~~~ 406 (470)
.. .+.+....++..++.+.+.+.|++.|+++ +..|. +|+.+|+++++..
T Consensus 293 ~~-------l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~------- 358 (430)
T 3ri6_A 293 LG-------LETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKE------- 358 (430)
T ss_dssp HH-------HHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHH-------
T ss_pred hh-------hhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHH-------
Confidence 22 23345555666778888999998888875 44343 6646899997431
Q ss_pred CCCCCHHHHHHHHHHcCCEEEECCCCCC-----------------------CCCcEEEEeec-CHHHHHHHHHHHHHHH
Q 012124 407 GKIENSESLCRYLLDKAQVALVPGDAFG-----------------------DDTCIRISYAA-SLTTLQAAVERIKKGL 461 (470)
Q Consensus 407 ~~~~~~~~l~~~L~~~~gI~v~pg~~f~-----------------------~~~~iRls~~~-~~~~i~~~l~~l~~~l 461 (470)
+...|.+.|. ..++.+.+|..+. .++.||||++. +.++ .++.|++++
T Consensus 359 ----~~~~~~~~l~-~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~E~~~d---l~~dl~~al 429 (430)
T 3ri6_A 359 ----ASYRFMDALK-LIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEEIED---LKEDILQAL 429 (430)
T ss_dssp ----HHHHHHHHCS-SSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCSSCHHH---HHHHHHHHH
T ss_pred ----HHHHHHHhCC-cceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHH---HHHHHHHhh
Confidence 4566666653 3467777777654 13689999997 4444 444444443
No 203
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.90 E-value=5.9e-29 Score=249.18 Aligned_cols=339 Identities=14% Similarity=0.100 Sum_probs=232.2
Q ss_pred hcCCCeEEccCCCCC--CC-ChHHHHHHHHHHHHcCC-CCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHH
Q 012124 91 QAGVSVIRLAAGEPD--FD-TPVLIAEAGINAIREGF-TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 91 ~~~~~~i~l~~g~~~--~~-~~~~~~~a~~~~~~~~~-~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
.+|+.+|||..|... +. .++.+.+++.+++.+.. ..| +.....+|.+.|++++ + ..+++++++++++|
T Consensus 97 ~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~~~~-~~~~~~~Lae~L~~~~----p---~~~~v~~~nSGseA 168 (465)
T 2yky_A 97 VDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLNLST-QTENEALFAEAVCDRF----P---SIDLVRFTNSGTEA 168 (465)
Confidence 478889999998753 32 27889999998887642 233 4444455666666554 2 34789999999999
Q ss_pred HHHHHHHhc--CCCCeEEEcCCCCCChHHHHH----HcCC--EEEEecCcCCCCCccCHHhHhhhcc---CCceEEEEcC
Q 012124 167 ILQAVLAVC--SPGDEVIIPAPFWVSYPEMAR----IADA--TPVILPTRISENFLLDPKVLESKLT---EKSRLLILCS 235 (470)
Q Consensus 167 l~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~----~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~i~l~~ 235 (470)
+..+++... ..+|.|++.+++|+++...+. ..|. .++.+|. .|++.|+++++ +++++|++..
T Consensus 169 ~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l~~~~~~~aavi~ep 241 (465)
T 2yky_A 169 NLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTADLLKRHGHDCAAILVEP 241 (465)
Confidence 999988753 345999999999988765433 1233 2233332 27899999997 5788887765
Q ss_pred CCCCcccC-CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEE
Q 012124 236 PSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 314 (470)
Q Consensus 236 p~nPtG~~-~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~ 314 (470)
.+++||.. .+.+.+++|.++|++| |+++|+||+|. +.++. ...++. .+....+.||||.+| .|+|+||++
T Consensus 242 v~~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~~-~r~g~-----~~a~~~-~gv~pDi~t~sK~lg-~G~piG~v~ 312 (465)
T 2yky_A 242 MLGAGGCVPAERAFLDLLRAEASRC-GALLIFDEVMT-SRLSG-----GGAQEM-LGISADLTTLGKYIG-GGMSFGAFG 312 (465)
Confidence 56669964 4688999999999999 99999999999 74421 111211 122344668999998 699999999
Q ss_pred cCHHHHHHHHH-----HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC---CCeecCCC
Q 012124 315 GPKHFVAACNK-----IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE---GVKMSEPQ 386 (470)
Q Consensus 315 ~~~~~~~~l~~-----~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~ 386 (470)
+++++++.+.. .....+++.+++.|.++.+.|+.- ++ ..+.++++++.+++.+.|+++. ++....+.
T Consensus 313 ~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l---~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g 387 (465)
T 2yky_A 313 GRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQI---YT--RQAASDLSASGDRFRANLNRIAVENQAPLQFTG 387 (465)
Confidence 99999998876 234467788999999998888642 11 2344555556666666665531 23233345
Q ss_pred ceEEEeeeccC-ccCCcccCC--CCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 387 GAFYLFIDFST-YYGSEAEGF--GKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 387 ~g~~~~~~~~~-~~~~~~~~~--~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
.|.++|+.+++ .+. ..... ........+++.|+++ ||.+.|+. |.. +++..+++++++++++|++++++
T Consensus 388 ~G~~~~i~~~~~~~~-~~~~~~~~d~~~~~~~~~~ll~~-GV~v~p~~-~~~-----~s~~~t~edid~~l~~l~~~l~~ 459 (465)
T 2yky_A 388 LGSLGTIHFSRAPIR-SAGDVRAADQQLKELFFFHMLRK-GIYLAPRG-MYA-----LSLEIADAGRDAFAEALADFIGE 459 (465)
Confidence 57778888764 100 00000 0001245788888865 99999976 321 77777999999999999999987
Q ss_pred hCC
Q 012124 464 LRP 466 (470)
Q Consensus 464 ~~~ 466 (470)
++.
T Consensus 460 ~~~ 462 (465)
T 2yky_A 460 QRA 462 (465)
Confidence 754
No 204
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.94 E-value=2.2e-25 Score=224.10 Aligned_cols=340 Identities=16% Similarity=0.177 Sum_probs=224.8
Q ss_pred HHHHHHHHHHhcCCC--eEEccCCCCCCCChHHHHHHHH--HHHHcCCCCCC--CCcCcHHHHHHHHHHHHHHcCCCCCC
Q 012124 81 AITDQATALAQAGVS--VIRLAAGEPDFDTPVLIAEAGI--NAIREGFTRYT--PNAGTLELRSAICHKLKEENGLSYTP 154 (470)
Q Consensus 81 ~~~~~~~~~~~~~~~--~i~l~~g~~~~~~~~~~~~a~~--~~~~~~~~~y~--~~~g~~~lr~~ia~~l~~~~g~~~~~ 154 (470)
++.+....+...+.. ...++.|.++...|+.+.+.+. +.... ...|. ..+|..++.+.+.+.+.+.+|. ++
T Consensus 49 ~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~p~~v~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~la~~~g~--~~ 125 (438)
T 1wyu_A 49 KVLEELRRLAAQNLPAHKAFLGGGVRSHHVPPVVQALAARGEFLTA-YTPYQPEVSQGVLQATFEYQTMIAELAGL--EI 125 (438)
T ss_dssp HHHHHHHHHHHTSCCCTTCCCCSSCCCCCCCHHHHHHHTSHHHHHC-CSCCSGGGCHHHHHHHHHHHHHHHHHHTS--SE
T ss_pred HHHHHHHHHHhcCcCccccccCCCccCCcCcHHHHHHHhcchhhhc-CCCCcchhhhhHHHHHHHHHHHHHHHhCC--Cc
Confidence 444444555444432 3467778887777777644442 22222 22231 1567777777777777777785 56
Q ss_pred CcEEEecChHHHHHHHHHH-hcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecCcCCCCCccCHHhHhhhccCCce
Q 012124 155 DQILVSNGAKQSILQAVLA-VCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRISENFLLDPKVLESKLTEKSR 229 (470)
Q Consensus 155 ~~i~it~g~~~al~~~~~~-l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 229 (470)
+++++++|++.+.+.+..+ ..++||+|++++++|+.+...+ +..|++++.++.. ++.+|++. ++++++
T Consensus 126 ~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~---~~~~d~~~----i~~~t~ 198 (438)
T 1wyu_A 126 ANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLE---GGRTPLPE----VGEEVG 198 (438)
T ss_dssp ECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCB---TTBCCCCC----CCTTEE
T ss_pred cceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCc---CCccCHHH----hCCCeE
Confidence 7899999999443433333 2479999999999999988655 4489999999972 23577766 667899
Q ss_pred EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEecc-ccccccCCCCcccccccCCCCCceEEEeccCccc----c
Q 012124 230 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI-YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF----A 304 (470)
Q Consensus 230 ~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~-~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~----~ 304 (470)
+|++++| ||||.+.+ +++|+++|+++ |+++|+|-. .+ ++....+ ..+ +..+++.| +|.| +
T Consensus 199 ~v~i~~p-n~tG~~~~---l~~i~~la~~~-g~~vivd~d~~a---~g~~~~~--~~~----g~D~~~~s-~kk~~~~~~ 263 (438)
T 1wyu_A 199 AVVVQNP-NFLGALED---LGPFAEAAHGA-GALFVAVADPLS---LGVLKPP--GAY----GADIAVGD-GQSLGLPMG 263 (438)
T ss_dssp EEEEESS-CTTSBCCC---HHHHHHHHHHT-TCEEEEECCTTG---GGTBCCH--HHH----TCSEEEEE-CTTTTCCCG
T ss_pred EEEEECC-CCCeEEec---HHHHHHHHHHc-CCEEEEEechhh---ccCcCCC--ccC----CCCEEEEC-CcccCCCcc
Confidence 9999999 99999998 88999999999 999996622 21 1110111 112 23366666 5654 3
Q ss_pred cccceeeEEEcCHHHHHHHHH----------------------------HhhhccCCC-ChHHHHHHHHHHhcCCCChHH
Q 012124 305 MTGWRLGYIAGPKHFVAACNK----------------------------IQSQFTSGA-SSISQKAGVAALGLGYAGGEV 355 (470)
Q Consensus 305 ~~G~r~G~~~~~~~~~~~l~~----------------------------~~~~~~~~~-~~~~q~a~~~~l~~~~~~~~~ 355 (470)
+.|.++||+++++++++.+.. .....+.++ +.+...++..++... ..+.
T Consensus 264 ~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~--~~~g 341 (438)
T 1wyu_A 264 FGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAAL--GPEG 341 (438)
T ss_dssp GGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHH--HHHH
T ss_pred CCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHh--CHHH
Confidence 567789999999887765411 011111111 222222222223210 1455
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEE--ECCCCC
Q 012124 356 VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL--VPGDAF 433 (470)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v--~pg~~f 433 (470)
++++.++++++++++.+.|++++|+++..+. .+|.++.+.... +..+++++|.++ ||.+ .++..|
T Consensus 342 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~L~~~-gi~v~~~~~~~~ 408 (438)
T 1wyu_A 342 LREVALKSVEMAHKLHALLLEVPGVRPFTPK-PFFNEFALALPK-----------DPEAVRRALAER-GFHGATPVPREY 408 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCEECSCS-SBCSEEEEECSS-----------CHHHHHHHHHHT-TCCCCEECCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEECCCC-CeEEEEEEeCCC-----------CHHHHHHHHHHC-Cceecccccccc
Confidence 7888899999999999999999899887653 333333332111 678899998876 9988 677655
Q ss_pred CCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012124 434 GDDTCIRISYAA--SLTTLQAAVERIKKGL 461 (470)
Q Consensus 434 ~~~~~iRls~~~--~~~~i~~~l~~l~~~l 461 (470)
. ++++|++++. +++++++++++|++++
T Consensus 409 ~-~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 409 G-ENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp C-SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred C-CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 4 7899999995 8899999999998764
No 205
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.94 E-value=2e-26 Score=231.84 Aligned_cols=288 Identities=14% Similarity=0.109 Sum_probs=197.7
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCc
Q 012124 129 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR 208 (470)
Q Consensus 129 ~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 208 (470)
+.....++++.+++ + |. + +++++|+|+++++.+++++++++||+|++++|+|.++...+...|++++.++..
T Consensus 55 ~~~~~~~~~~~la~-~----g~--~-~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~ 126 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-H----SD--Y-DGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQQEGHFIETH 126 (446)
T ss_dssp CSSHHHHHHHHHCS-C----TT--E-EEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHHHTCCEEECEEE
T ss_pred cchHHHHHHHHHHh-c----CC--C-ceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHcCCeEEEEeCe
Confidence 44455666666665 4 42 3 689999999999999999999999999999999999999999999999999883
Q ss_pred CCCC----CccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccc-cccCCCCcccc
Q 012124 209 ISEN----FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSF 283 (470)
Q Consensus 209 ~~~~----~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~-~~~~~~~~~~~ 283 (470)
.+++ +.+|++.| ++++++++++++ +|+||.+++ +++|+++|++| |++||+|++|+. +.|.+. ..+.
T Consensus 127 ~~~~~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~-~~~livDea~~~~~~f~~~-~~~~ 197 (446)
T 2x3l_A 127 QSPLTNHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFN---VEEVIKSLHQL-NIPVLIDEAHGAHFGLQGF-PDST 197 (446)
T ss_dssp ECTTTSSEEEEEC----------CCEEEEES-SCTTSCCCC---HHHHHHHHHHT-TCCEEEECTTCTTTTSTTS-CCCG
T ss_pred eccccCcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecC---HHHHHHHHHhc-CCeEEEcchhhhhhccCCC-CCCh
Confidence 2332 45788887 456789999988 566999999 88999999999 999999999986 445443 2233
Q ss_pred cccCCCCCceEEEeccCcccccccceeeEEEcCHHHHH--HHHHHhhhc-cCCCChHHHHHHHHHHhcCCCChHH-HHHH
Q 012124 284 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA--ACNKIQSQF-TSGASSISQKAGVAALGLGYAGGEV-VSKM 359 (470)
Q Consensus 284 ~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~--~l~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~-~~~~ 359 (470)
..+. ..+++.|+||.++ ++.++||+++++++++ .+......+ ..+++.....++..+++. .... .+++
T Consensus 198 ~~~g----~Di~~~S~~K~l~-~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~---l~~~g~~~~ 269 (446)
T 2x3l_A 198 LNYQ----ADYVVQSFHKTLP-ALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQF---YKTYDSTLF 269 (446)
T ss_dssp GGGT----CSEEEECHHHHSS-SCTTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH---HHHCCCHHH
T ss_pred HHcC----CCEEEECCccccc-cccccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHH---HHHhCHHHH
Confidence 3222 2499999999764 4456899999877654 333222222 333444333333222221 0110 1113
Q ss_pred HHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEE-CCCCCCCCCc
Q 012124 360 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV-PGDAFGDDTC 438 (470)
Q Consensus 360 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~-pg~~f~~~~~ 438 (470)
.++.++..+.+.+. |+.+..+..+.++|+.++.. +..++.+.|.++ ||.+. +|. ++
T Consensus 270 ~~~~~~l~~~l~~~-----g~~~~~~~~~~~l~i~~~~~------------~~~~l~~~L~~~-GI~v~~~g~-----~~ 326 (446)
T 2x3l_A 270 FAKRAQLIECLENK-----GFEMLQVDDPLKLLIKYEGF------------TGHDIQNWFMNA-HIYLELADD-----YQ 326 (446)
T ss_dssp HHHHHHHHHHHHHH-----TCEEEECSSTTEEEEECTTS------------CHHHHHHHHHHT-TEEESEECS-----SC
T ss_pred HHHHHHHHHHHHHc-----CCEECcCCCCeEEEEEeCCc------------CHHHHHHHHHHC-CCEEEecCC-----CE
Confidence 44444444444444 66666555555688888732 678898888877 99987 543 68
Q ss_pred EEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 439 IRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 439 iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
+|++++. +++++ +++++|+++++++.
T Consensus 327 iRi~~~~~~t~e~i-~l~~aL~~~~~~~~ 354 (446)
T 2x3l_A 327 ALAILPLWHHDDTY-LFDSLLRKIEDMIL 354 (446)
T ss_dssp EEEECCCCCTTCCC-CHHHHHHHHHTCCC
T ss_pred EEEEeecCCCHHHH-HHHHHHHHHHHhhc
Confidence 9999986 77889 99999999987663
No 206
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.94 E-value=1.3e-24 Score=222.15 Aligned_cols=342 Identities=13% Similarity=0.099 Sum_probs=238.2
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcC------------
Q 012124 109 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS------------ 176 (470)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~------------ 176 (470)
+..+.+.+..++......|....+..++++.+++++.+.+|.+..++.+++|+|+++++..++.++.+
T Consensus 109 ~~~~~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~ 188 (511)
T 3vp6_A 109 IGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMA 188 (511)
T ss_dssp HHHHHHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGG
T ss_pred HHHHHHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcc
Confidence 34456777778777778898888999999999999999999876678999999999999988877654
Q ss_pred --CCCeEEEcCCCCCChHHHHHHcCC---EEEEecCcCCCCCccCHHhHhhhccCC------ceEEEEcCCCCCcccCCC
Q 012124 177 --PGDEVIIPAPFWVSYPEMARIADA---TPVILPTRISENFLLDPKVLESKLTEK------SRLLILCSPSNPTGSVYP 245 (470)
Q Consensus 177 --~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~i~l~~p~nPtG~~~s 245 (470)
+++.|++++++|+++...++..|+ +++.++.+. ++.+|++.|+++++++ +++|+++.++||||.+-+
T Consensus 189 ~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~--~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~ 266 (511)
T 3vp6_A 189 AVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP 266 (511)
T ss_dssp GSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC
T ss_pred cCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecCC--CCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc
Confidence 578999999999999999999998 899999863 4679999999999654 788889999999999977
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH-HHHHHHH
Q 012124 246 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACN 324 (470)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~-~~~~~l~ 324 (470)
+++|+++|++| |+|+++|++|+........... .+.+...-.+++.+++|.++.| ..+|+++.+. ++++...
T Consensus 267 ---l~~I~~ia~~~-~~~lhvD~a~~~~~~~~~~~~~--~~~g~~~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~ 339 (511)
T 3vp6_A 267 ---IQEIADICEKY-NLWLHVDAAWGGGLLMSRKHRH--KLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCN 339 (511)
T ss_dssp ---HHHHHHHHHHH-TCEEEEEETTGGGGGGCTTTGG--GGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHH
T ss_pred ---HHHHHHHHHHc-CCEEEEEccchhhHhhChhhhh--hccCCccCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHh
Confidence 89999999999 9999999999875442211111 1111123346778999998744 6788887754 3444432
Q ss_pred HHhhhc-----------------cC-C---CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec
Q 012124 325 KIQSQF-----------------TS-G---ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 383 (470)
Q Consensus 325 ~~~~~~-----------------~~-~---~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 383 (470)
.....+ .. + ...+...++..++ +.++++++.++..++.+++.+.|++.||+++.
T Consensus 340 ~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~-----g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~ 414 (511)
T 3vp6_A 340 QMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAK-----GTVGFENQINKCLELAEYLYAKIKNREEFEMV 414 (511)
T ss_dssp CCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHSCTTEEES
T ss_pred ccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 111000 00 0 1233333333333 25778889999999999999999998899886
Q ss_pred C---CCceEEEeeeccCccCCcccCC----CCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHHHHHH
Q 012124 384 E---PQGAFYLFIDFSTYYGSEAEGF----GKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAA 453 (470)
Q Consensus 384 ~---~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~---~~~~i~~~ 453 (470)
. |..+++.|...|.......... +......++.++|.+++.+.+......+..+++|++++. +.++|+.+
T Consensus 415 ~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~l 494 (511)
T 3vp6_A 415 FNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFL 494 (511)
T ss_dssp SSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHH
T ss_pred ecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHH
Confidence 5 5566644433343210000000 000012367888888743444321111122479999953 88999999
Q ss_pred HHHHHHHHHhh
Q 012124 454 VERIKKGLLTL 464 (470)
Q Consensus 454 l~~l~~~l~~~ 464 (470)
++.|+++-+.+
T Consensus 495 l~~i~~~~~~~ 505 (511)
T 3vp6_A 495 IEEIERLGQDL 505 (511)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHhh
Confidence 99998876544
No 207
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.94 E-value=2.2e-26 Score=233.09 Aligned_cols=339 Identities=12% Similarity=0.036 Sum_probs=228.0
Q ss_pred cCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHc----CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChH
Q 012124 92 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIRE----GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~----~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~ 164 (470)
+|+.+|||..|... +.. ++.+.+++.+++.. ....|+. ....+|++.+++.+.+..+ ...++|++++|++
T Consensus 61 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~--~~~~~v~f~~sGs 137 (472)
T 1ohv_A 61 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAP--KGMSQLITMACGS 137 (472)
T ss_dssp TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCC--TTCCEEEEESSHH
T ss_pred CCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCC--CCcCEEEEeCCch
Confidence 57789999988754 333 78899999887532 1123432 3457899999998776544 3567999999999
Q ss_pred HHHHHHHHHhc--------C-----------------CC---CeEEEcCCCCCChHHHH-HHcCCE-------------E
Q 012124 165 QSILQAVLAVC--------S-----------------PG---DEVIIPAPFWVSYPEMA-RIADAT-------------P 202 (470)
Q Consensus 165 ~al~~~~~~l~--------~-----------------~g---d~Vlv~~p~y~~~~~~~-~~~g~~-------------~ 202 (470)
+|++.+++.+. . || +.|++.+++|+++.... ...|.. .
T Consensus 138 eA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~ 217 (472)
T 1ohv_A 138 CSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPI 217 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCE
T ss_pred hHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcc
Confidence 99999998773 1 46 89999999999977654 333321 1
Q ss_pred EEecCcC---CCC--C-----ccCHHhHhhhccC------CceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEE
Q 012124 203 VILPTRI---SEN--F-----LLDPKVLESKLTE------KSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVL 265 (470)
Q Consensus 203 ~~v~~~~---~~~--~-----~~d~~~l~~~l~~------~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI 265 (470)
+++|... ... + ..|++.|++++++ ++++|++...+|+||. ..+.+.+++|.++|++| |+++|
T Consensus 218 ~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~-g~lli 296 (472)
T 1ohv_A 218 APFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKH-GCAFL 296 (472)
T ss_dssp ECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHT-TCEEE
T ss_pred cCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHh-CCEEE
Confidence 1222110 000 0 1268899999865 7888888777888996 57899999999999999 99999
Q ss_pred EeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHH
Q 012124 266 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAA 345 (470)
Q Consensus 266 ~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~ 345 (470)
+||+|.++.+.+. ...+..+.- ...+.+.||||.+ +.| ||++ ++++. .+.......+++.+++.|.++.++
T Consensus 297 ~DEv~~g~g~~g~-~~~~~~~gv--~~~~Di~t~sK~~-l~G---G~~~-~~~~~-~~~~~~~~~T~~~~~~~~aaa~aa 367 (472)
T 1ohv_A 297 VDEVQTGGGSTGK-FWAHEHWGL--DDPADVMTFSKKM-MTG---GFFH-KEEFR-PNAPYRIFNTWLGDPSKNLLLAEV 367 (472)
T ss_dssp EECTTTTTTTTSS-SSGGGGGCC--SSCCSEEEECGGG-SSE---EEEE-CGGGS-CSSSSSSCCSSSSCHHHHHHHHHH
T ss_pred EeCcccCCCCCCC-chhccccCC--CCCCCEEEEcccc-ccC---CccC-chhhc-ccccccccCccCccHHHHHHHHHH
Confidence 9999987654432 112222210 0012255899995 345 7776 65542 122223345567799999998888
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHHHHHHhccC----CC-CeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHH
Q 012124 346 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 420 (470)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 420 (470)
|+.- .+ ..+.++++++++++.+.|+++ ++ +....+. |.++++++++.. +...+++.|+
T Consensus 368 l~~~---~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~-g~~~~~~~~~~~-----------~~~~~~~~l~ 430 (472)
T 1ohv_A 368 INII---KR--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGR-GTFCSFDTPDES-----------IRNKLISIAR 430 (472)
T ss_dssp HHHH---HH--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEE-TTEEEEECSSHH-----------HHHHHHHHHH
T ss_pred HHHH---Hh--CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCC-ceEEEEEeCChh-----------HHHHHHHHHH
Confidence 8631 11 234566666777776666553 43 4333444 444666775421 3567888888
Q ss_pred HcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 421 DKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 421 ~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
++ ||.+.|+. .++||++++. +++++++++++|++++++++
T Consensus 431 ~~-Gv~~~~~g----~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~~ 472 (472)
T 1ohv_A 431 NK-GVMLGGCG----DKSIRFRPTLVFRDHHAHLFLNIFSDILADFK 472 (472)
T ss_dssp HT-TEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHTC-
T ss_pred HC-CeEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 65 99999852 4789997764 99999999999999988653
No 208
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.94 E-value=1.8e-25 Score=220.42 Aligned_cols=300 Identities=12% Similarity=0.128 Sum_probs=219.0
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChH--HHHHHcC--CEEEEecCc
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP--EMARIAD--ATPVILPTR 208 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~--~~~~~~g--~~~~~v~~~ 208 (470)
..++.+.+++.+.+.+|.+ +.|++|+|++++++.++.. +.+||+|++.+++|+++. ..++..| .+++.++.+
T Consensus 33 ~~~~~~~~~~~l~~~~~~~---~~v~~~~sgt~a~~~~~~~-~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 108 (379)
T 3ke3_A 33 FQEVMNDLLSNLKTVYNAE---AAVIIPGSGTYGMEAVARQ-LTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAE 108 (379)
T ss_dssp HHHHHHHHHHHHHHHHTCS---EEEEEESCHHHHHHHHHHH-HCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECE
T ss_pred HHHHHHHHHHHHHHHhCCC---CEEEEcCChhHHHHHHHHh-CCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEecc
Confidence 3467777777777777753 6899999999999998765 479999999999987754 3455556 478888775
Q ss_pred CCC------C-CccCHHhHhhhcc-CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc
Q 012124 209 ISE------N-FLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 280 (470)
Q Consensus 209 ~~~------~-~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~ 280 (470)
..+ . ..+|++.++++++ +++++|++++++||||.+++.+++++|.++|++| |+++|+|++++ . + ..
T Consensus 109 ~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~-~~~li~D~~~~-g---~-~~ 182 (379)
T 3ke3_A 109 RTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSV-GGLLVIDCIAS-G---C-VW 182 (379)
T ss_dssp ESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHT-TCEEEEECTTC-T---T-CC
T ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHc-CCEEEEEeccc-C---C-cc
Confidence 311 1 1479999999995 4899999999999999999999999999999999 99999999975 2 1 11
Q ss_pred ccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh-------------------h---hccCCCChHH
Q 012124 281 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-------------------S---QFTSGASSIS 338 (470)
Q Consensus 281 ~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~-------------------~---~~~~~~~~~~ 338 (470)
..+.. .+..+++.|++|.++ .+.++|++++++++++.+.... . .+.++++...
T Consensus 183 ~~~~~----~~~d~~~~s~~K~l~-~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~ 257 (379)
T 3ke3_A 183 LDMKE----LGIDVLISAPQKGWS-STPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDS 257 (379)
T ss_dssp CCHHH----HTCSEEEECTTTTTC-SCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHH
T ss_pred ccccc----cCCCEEEecchhhcC-CCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHH
Confidence 12221 234588999999986 4456899999999888775311 0 0123567777
Q ss_pred HHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCCeecCCC---ceEEEeeeccCccCCcccCCCCCCCHHH
Q 012124 339 QKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---GAFYLFIDFSTYYGSEAEGFGKIENSES 414 (470)
Q Consensus 339 q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (470)
+.++.++|+. ..+ .+++++++++++++++.+.|+++ |+++..+. .+....+..++ ....
T Consensus 258 ~~a~~aal~~---~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~~~-------------~~~~ 320 (379)
T 3ke3_A 258 LRQFRDAILE---AKEIGFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYTER-------------DDMH 320 (379)
T ss_dssp HHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEECSC-------------HHHH
T ss_pred HHHHHHHHHH---HHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEccCC-------------cchH
Confidence 7777777764 122 26788888999999999999888 77765443 23223333321 1122
Q ss_pred HHHHHHHcCCEEEECCCCCCC-----CCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 415 LCRYLLDKAQVALVPGDAFGD-----DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 415 l~~~L~~~~gI~v~pg~~f~~-----~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
+.+.|.+ +||.+.+|..+.. .+.+|++++. ++++|++++++|+++++++.
T Consensus 321 ~~~~L~~-~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 321 KGSAFAE-AGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp SSHHHHH-TTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-CCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 2455554 5999999976542 5789999985 88999999999999998764
No 209
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.94 E-value=9.4e-25 Score=214.80 Aligned_cols=321 Identities=11% Similarity=0.086 Sum_probs=223.6
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHH-HHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh-cC
Q 012124 99 LAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAI-CHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CS 176 (470)
Q Consensus 99 l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~i-a~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l-~~ 176 (470)
+..+.|++++++.+.+++.+.+..+...+ ......+|++++ ++++ | ..+++++++|+++++.+++.++ ++
T Consensus 5 i~~~~p~~~~~~~i~~a~~~~~~~~~~~~-~~~~~~~l~~~~~a~~~----g---~~~~~v~~~sgt~al~~al~~l~~~ 76 (377)
T 3ju7_A 5 IPFLRASTVPVIEYLDELKEIDASHIYTN-YGPINQRFEQTIMSGFF----Q---NRGAVTTVANATLGLMAAIQLKKRK 76 (377)
T ss_dssp BCSCCCCCCCGGGGHHHHHHHHHHTCCSS-SCHHHHHHHHHHHHHTS----T---TCSEEEEESCHHHHHHHHHHHHSCT
T ss_pred eeccCCCCCCcHHHHHHHHHHHHcCCccc-CCHHHHHHHHHHHHHHh----C---CCCeEEEeCCHHHHHHHHHHHcCCC
Confidence 45668999999999999999988765331 134578899999 8875 3 1568999999999999999998 89
Q ss_pred CCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhc-cCC--ceEEEEcCCCCCcccCCCHHHHHHHH
Q 012124 177 PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL-TEK--SRLLILCSPSNPTGSVYPKNLLDEIA 253 (470)
Q Consensus 177 ~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~--~~~i~l~~p~nPtG~~~s~~~~~~l~ 253 (470)
|||+|++++|+|+.+...++..|++++.+++++ +++.+|++.+++++ +++ +++|+ |+||||...+ +++|.
T Consensus 77 ~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~---~~~i~ 149 (377)
T 3ju7_A 77 KGKYALMPSFTFPATPLAAIWCGLEPYFIDISI-DDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMN---LEEYE 149 (377)
T ss_dssp TCCEEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCC---CHHHH
T ss_pred CcCEEEECCCCcHHHHHHHHHcCCEEEEEecCC-ccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccC---HHHHH
Confidence 999999999999999999999999999999974 45779999999988 556 88776 7789999988 77888
Q ss_pred HHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEecc--CcccccccceeeEEEc-CHHHHHHHHHHhhhc
Q 012124 254 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAG-PKHFVAACNKIQSQF 330 (470)
Q Consensus 254 ~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~--sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~ 330 (470)
++|+ + |++||+|++|+...... ... +.. ....+.+.|| +|.++ +| +.|+++. +++++++++.++...
T Consensus 150 ~la~-~-~~~vi~D~a~a~g~~~~--~~~---~g~-~~~d~~~~S~~~~K~l~-~g-~gG~~~~~~~~l~~~~~~~~~~g 219 (377)
T 3ju7_A 150 ELEK-K-GVPVVVDAAPGFGLMNG--GMH---YGQ-DFSGMIIYSFHATKPFG-IG-EGGLIYSKNEEDIQRIKRMGNFG 219 (377)
T ss_dssp HHHH-T-TCCBEEECTTCTTCEET--TEE---TTT-TCSSEEEEECBTTSSSC-CB-SCEEEEESCHHHHHHHHHHTBTT
T ss_pred HHHh-c-CCEEEEECCCccCCeEC--CEe---ccC-CCCcEEEEECCCCCcCC-CC-CcEEEEECCHHHHHHHHHHHhcC
Confidence 9999 9 99999999998532211 011 100 0112445555 69997 45 5777775 577888887765522
Q ss_pred ------------cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCC--eecCCCc--eE--EEe
Q 012124 331 ------------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV--KMSEPQG--AF--YLF 392 (470)
Q Consensus 331 ------------~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~--~~~~~~~--g~--~~~ 392 (470)
.+..+.+.+.++...++. ++...++.+++++.+.+.|++++++ .+....+ .+ |+.
T Consensus 220 ~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~-------l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 292 (377)
T 3ju7_A 220 FDTNRECTMMGFNCKMSEYAAAIGIATMKK-------WDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMP 292 (377)
T ss_dssp BCTTSCBCSSCCBCCCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEE
T ss_pred CCCCCceeeccccCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEE
Confidence 344566655555454542 3444445555666666677666543 2222111 12 223
Q ss_pred eeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC--C------CC-------------CCcEEEEeec--CHHH
Q 012124 393 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA--F------GD-------------DTCIRISYAA--SLTT 449 (470)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~--f------~~-------------~~~iRls~~~--~~~~ 449 (470)
+.+++.. +.+++.+.|.++ ||.+..+.. . .. ...+||++.. ++++
T Consensus 293 ~~~~~~~-----------~~~~l~~~L~~~-gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~d 360 (377)
T 3ju7_A 293 ILCPEEV-----------RNKQVIEDLKKQ-KIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEI 360 (377)
T ss_dssp EECCTTS-----------CHHHHHHHHHTT-TBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHH
T ss_pred EEeCChh-----------hHHHHHHHHHHC-CCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHH
Confidence 4454321 477888888655 998887652 1 00 1369999886 8999
Q ss_pred HHHHHHHHHHHHHh
Q 012124 450 LQAAVERIKKGLLT 463 (470)
Q Consensus 450 i~~~l~~l~~~l~~ 463 (470)
++..++.|++++.+
T Consensus 361 i~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 361 VEQIVICLGQKVVS 374 (377)
T ss_dssp HHHHHHHHTC----
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887764
No 210
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.94 E-value=2.3e-24 Score=214.19 Aligned_cols=213 Identities=12% Similarity=0.127 Sum_probs=161.7
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecCc
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTR 208 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~ 208 (470)
..++++.+++++ |. +++++++|+++++.+++.+++++||+|++++|.|++....+ +..|+++..++.+
T Consensus 84 ~~~le~~lA~l~----g~----~~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~ 155 (415)
T 2fq6_A 84 HFSLQQAMCELE----GG----AGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL 155 (415)
T ss_dssp HHHHHHHHHHHH----TC----SEEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT
T ss_pred HHHHHHHHHHHh----CC----CeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCC
Confidence 455777777665 42 36778889999999999999999999999999999877654 4579999988752
Q ss_pred CCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHh--CCCEEEEEeccccccccCCCCccccccc
Q 012124 209 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK--HPRLLVLSDEIYEHIIYAPATHTSFASL 286 (470)
Q Consensus 209 ~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~--~~~~~iI~Dd~~~~~~~~~~~~~~~~~~ 286 (470)
|++.|++++++++++|++++|+||||.+++ +++|+++|++ + |+++|+|++|+...+. .++ .
T Consensus 156 -------d~~~le~ai~~~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~-g~~livD~a~a~~~~~----~p~-~- 218 (415)
T 2fq6_A 156 -------IGADIVKHLQPNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVP-DAIIMIDNTWAAGVLF----KAL-D- 218 (415)
T ss_dssp -------CGGGGGGGCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCT-TCEEEEECTTTTTTSS----CGG-G-
T ss_pred -------CHHHHHHhhccCCcEEEEECCCCCCCEeec---HHHHHHHHHhhcC-CCEEEEECCCcccccC----Ccc-c-
Confidence 889999999999999999999999999999 8899999999 9 9999999999864321 122 1
Q ss_pred CCCCCceEEEeccCcccccccce-eeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 012124 287 PGMWERTLTVNGFSKAFAMTGWR-LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365 (470)
Q Consensus 287 ~~~~~~~i~i~S~sK~~~~~G~r-~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~ 365 (470)
.+..+++.|++|.++.+|.+ .||+++++++++.+...........++..+.++...++ .+....+...+
T Consensus 219 ---~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l~-------~l~~r~~~~~~ 288 (415)
T 2fq6_A 219 ---FGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLR-------TLGVRLRQHHE 288 (415)
T ss_dssp ---GTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred ---cCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh-------HHHHHHHHHHH
Confidence 24569999999999867654 69999998888888776654454556654444333333 33444455566
Q ss_pred HHHHHHHHhccCCCC
Q 012124 366 RRDFLVKSFGELEGV 380 (470)
Q Consensus 366 ~~~~l~~~L~~~~g~ 380 (470)
+.+.+.+.|++.|.+
T Consensus 289 n~~~l~~~L~~~~~v 303 (415)
T 2fq6_A 289 SSLKVAEWLAEHPQV 303 (415)
T ss_dssp HHHHHHHHHHTCTTE
T ss_pred HHHHHHHHHHcCCCe
Confidence 677777777665443
No 211
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.93 E-value=8.2e-25 Score=223.46 Aligned_cols=329 Identities=12% Similarity=0.134 Sum_probs=229.7
Q ss_pred ChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh----c-------
Q 012124 108 TPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV----C------- 175 (470)
Q Consensus 108 ~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l----~------- 175 (470)
.++.+.+++.....+ ....|....+..++.+.+.+++.+.+|.+ ..+++++|+|+++++..++.++ +
T Consensus 112 ~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~-~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~ 190 (497)
T 2qma_A 112 LMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLS-EKADGIFTSGGTQSNQMGLMLARDWIADKLSGHS 190 (497)
T ss_dssp BHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCC-TTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCC-CCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccc
Confidence 367777776555443 34456555677889999999999888864 3379999999999999888873 2
Q ss_pred --CC------CC-eEEEcCCCCCChHHHHHHcCC---EEEEecCcCCCCCccCHHhHhhhccCC----ce--EEEEcCCC
Q 012124 176 --SP------GD-EVIIPAPFWVSYPEMARIADA---TPVILPTRISENFLLDPKVLESKLTEK----SR--LLILCSPS 237 (470)
Q Consensus 176 --~~------gd-~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~----~~--~i~l~~p~ 237 (470)
.+ || .|++++++|.++...++..|. +++.+|++ .++.+|++.|+++++++ ++ +|+++.++
T Consensus 191 ~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~ 268 (497)
T 2qma_A 191 IQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDAN--ADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGT 268 (497)
T ss_dssp HHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSC
T ss_pred hhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecC--CCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCC
Confidence 13 46 899999999999999988876 79999986 35679999999998643 34 77788899
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH
Q 012124 238 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 317 (470)
Q Consensus 238 nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~ 317 (470)
||||...+ +++|+++|++| |+++++|++|+.+.+... ... .+.+.....+++.|++|.++ .+.++|++++++
T Consensus 269 ~~tG~~~~---l~~I~~l~~~~-~~~l~vD~a~~~~~~~~~-~~~--~~~gi~~~D~i~~s~hK~l~-~p~~~G~l~~~~ 340 (497)
T 2qma_A 269 TDHGAIDD---LDFIADMAVKH-DMWMHVDGAYGGALILSS-HKS--RLKGVERAHSISVDFHKLFY-QTISCGALLVND 340 (497)
T ss_dssp TTTCCBCC---HHHHHHHHHHH-TCEEEEEETTGGGGGGST-TGG--GGTTGGGCSEEEEETTTTTC-CCSSCEEEEESC
T ss_pred CCCCCCCC---HHHHHHHHHHc-CCEEEEehhhhHHHHhCc-chH--hhcCcccCCEEEEcchhccC-CCcceEEEEEeC
Confidence 99999888 88999999999 999999999998665332 110 11211133477889999887 447999999764
Q ss_pred H-HHHHHHHHhhhccCC----C-------------ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC
Q 012124 318 H-FVAACNKIQSQFTSG----A-------------SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 379 (470)
Q Consensus 318 ~-~~~~l~~~~~~~~~~----~-------------~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 379 (470)
+ .++.+.....+.... + ..+.+.++...+ ..+.++++.++..++++++.+.|+++++
T Consensus 341 ~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~l-----g~~g~~~~~~~~~~~a~~l~~~L~~~~~ 415 (497)
T 2qma_A 341 KSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNV-----GPKALGDMYDHLLAQTLEVADMIRTNDQ 415 (497)
T ss_dssp GGGGGGGCC--------------------CCSCCCTHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHh-----CHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3 333221100000000 1 112222223332 2567788888889999999999999888
Q ss_pred Ceec-CCCceEEEeeeccCccCCcccCCCCCCC----HHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee---cCHHHHH
Q 012124 380 VKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIEN----SESLCRYLLDKAQVALVPGDAFGDDTCIRISYA---ASLTTLQ 451 (470)
Q Consensus 380 ~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~---~~~~~i~ 451 (470)
+++. .+..++ +++++.+.- .+ ..++.+.|.++ |+.+.++..+...+++|+++. .++++++
T Consensus 416 ~~~~~~~~~~~-v~f~~~~~~----------~~~~~l~~~l~~~l~~~-G~~~~~~~~~~g~~~lRis~~~~~~t~edi~ 483 (497)
T 2qma_A 416 FELLAEPSLST-VLFRATHET----------ADLDELNKALRLEALTR-GIAVLGETIVDGKTALKFTILNPCLTTSDFE 483 (497)
T ss_dssp EEECSCCSSSE-EEEEECCSS----------SCHHHHHHHHHHHHHHH-TSCBCEEEEETTEEEEEEECCCTTCCHHHHH
T ss_pred eEEEcCCCceE-EEEEEcCCc----------cCHHHHHHHHHHHHHhC-CCEEEEeeEECCEEEEEEEecCCCCCHHHHH
Confidence 8874 455565 555664320 01 23566667665 787766554544568999984 2899999
Q ss_pred HHHHHHHHHHHhh
Q 012124 452 AAVERIKKGLLTL 464 (470)
Q Consensus 452 ~~l~~l~~~l~~~ 464 (470)
+++++|+++++++
T Consensus 484 ~~~~~l~~~~~~~ 496 (497)
T 2qma_A 484 SLLSKINMLAVEL 496 (497)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988764
No 212
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.93 E-value=4.3e-25 Score=222.90 Aligned_cols=297 Identities=13% Similarity=0.123 Sum_probs=212.9
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChH-HHHHHHHHHhcC--CCCeEEEcCCCCCChHHHHHHcCCEEEEecCcC
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAK-QSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRI 209 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~-~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~ 209 (470)
..++.+.+.+++.+.+|.+ ++ +++|+|++ .++.+++.++.. +|+.|++.++.|+.+...++..|++++.++..+
T Consensus 131 ~~~~~~~~~~~la~~~g~~--~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~ 207 (456)
T 2z67_A 131 MYALTNKILESFFKQLGLN--VH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVL 207 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCC--CE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEE
T ss_pred HHHHHHHHHHHHHHHcCCC--CC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEec
Confidence 5667788888888888853 34 99999999 455545555433 678899999999999999999999999998743
Q ss_pred -CCCCccCHHhHhhhc-c----CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccc
Q 012124 210 -SENFLLDPKVLESKL-T----EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 283 (470)
Q Consensus 210 -~~~~~~d~~~l~~~l-~----~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~ 283 (470)
++++.+|++.|++++ + .++.+|++++|+||||.+.+ +++|.++|+++ |+++++|++|+.+.++. .....
T Consensus 208 ~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~-g~~v~vD~A~~~~~~g~-~~~~~ 282 (456)
T 2z67_A 208 DGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD---IVEIAKICENY-DIPHIINGAYAIQNNYY-LEKLK 282 (456)
T ss_dssp ETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHH-TCCEEEECTTTTTCHHH-HHHHH
T ss_pred cCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHc-CCcEEEECcchHHHHHh-hHHHH
Confidence 345679999999999 4 36777778999999999988 88899999999 99999999998754321 00111
Q ss_pred cccCCCCCceEEEeccCcccccccceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012124 284 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 362 (470)
Q Consensus 284 ~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 362 (470)
..+.. +..+++.|++|.++ .+.++||+++ ++++++.+...........+.+.+.++...+. .+.++++.++
T Consensus 283 ~~~~~--~~D~~~~s~hK~~~-~p~g~G~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l~-----~~~~~~~~~~ 354 (456)
T 2z67_A 283 KAFKY--RVDAVVSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMG-----SKNYLELVKN 354 (456)
T ss_dssp HHHTS--CCSEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred HhhCC--CCCEEEEcCCCCcC-CCCCeEEEEEcCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 11211 23367889999874 6789999999 57787776332211111122444444444442 4567888899
Q ss_pred HHHHHHHHHHHhccCC---CCeecCCCceEEEeeec--cCccCCcccCCCCCCCHHHHHHHHHHcCCE---EEE------
Q 012124 363 FRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDF--STYYGSEAEGFGKIENSESLCRYLLDKAQV---ALV------ 428 (470)
Q Consensus 363 ~~~~~~~l~~~L~~~~---g~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI---~v~------ 428 (470)
+.++++++.+.|++++ |+.+..+. ++ +++.+ ++ ...++.+.|.++ || .+.
T Consensus 355 ~~~~~~~l~~~L~~~~~~~g~~v~~~~-~~-v~~~~~~~~-------------~~~~l~~~L~~~-gi~~~rv~~~~g~f 418 (456)
T 2z67_A 355 QKNSKKLLDELLNDLSKKTGGKFLDVE-SP-IASCISVNS-------------DPVEIAAKLYNL-RVTGPRGIKKTDHF 418 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCBCCCC-CS-SEEEEECSS-------------CHHHHHHHHHHT-TEESCEEECTTCHH
T ss_pred HHHHHHHHHHHHHhcccccCCEecCCC-Ce-EEEEEeccc-------------HHHHHHHHHHHc-CCCcceEEeecCcc
Confidence 9999999999998875 77777666 44 55566 32 246788888766 54 443
Q ss_pred CCCCCC--CCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012124 429 PGDAFG--DDTCIRISYAA--SLTTLQAAVERIKKGL 461 (470)
Q Consensus 429 pg~~f~--~~~~iRls~~~--~~~~i~~~l~~l~~~l 461 (470)
+|..|. ..+++|++++. +++++++++++|++++
T Consensus 419 ~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 419 GNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp HHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred ccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 233332 24799999984 8999999999998754
No 213
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.93 E-value=2.5e-23 Score=205.94 Aligned_cols=306 Identities=13% Similarity=0.145 Sum_probs=214.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh-------cCCCCe
Q 012124 108 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-------CSPGDE 180 (470)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l-------~~~gd~ 180 (470)
.++.+++++.+.+... .|.+..+..++++.+++++. . +++++++++++++..++.++ +++||+
T Consensus 13 ~~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~~----~----~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~ 82 (390)
T 3b8x_A 13 WDDLEYKAIQSVLDSK--MFTMGEYVKQYETQFAKTFG----S----KYAVMVSSGSTANLLMIAALFFTKKPRLKKGDE 82 (390)
T ss_dssp CCHHHHHHHHHHHHHT--CCSSCHHHHHHHHHHHHHHT----C----SEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCE
T ss_pred CCHHHHHHHHHHHHcC--CCCCChHHHHHHHHHHHHHC----C----CcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCE
Confidence 3677888888888653 45577788999999999973 2 25677777778999999998 789999
Q ss_pred EEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC
Q 012124 181 VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 260 (470)
Q Consensus 181 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~ 260 (470)
|+++.|+|+++...++..|++++.++++++ ++.+|++.|++++++++++|++++ ++|...+ +++|.++|+++
T Consensus 83 Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~---~~~i~~l~~~~- 154 (390)
T 3b8x_A 83 IIVPAVSWSTTYYPLQQYGLRVKFVDIDIN-TLNIDIESLKEAVTDSTKAILTVN---LLGNPNN---FDEINKIIGGR- 154 (390)
T ss_dssp EEEESSSCHHHHHHHHHTTCEEEEECBCTT-TCSBCHHHHHHHCCTTEEEEEEEC---GGGCCCC---HHHHHHHHTTS-
T ss_pred EEECCCCcHHHHHHHHHcCCEEEEEecCcc-ccCcCHHHHHHHhCcCCeEEEEEC---CccChhh---HHHHHHHHHHc-
Confidence 999999999999999999999999999754 467999999999988999988863 5566666 88999999999
Q ss_pred CEEEEEeccccccccCCCCcccccccCCCCCceEEEec--cCcccccccceeeEEEcCH-HHHHHHHHHhhhc-------
Q 012124 261 RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG--FSKAFAMTGWRLGYIAGPK-HFVAACNKIQSQF------- 330 (470)
Q Consensus 261 ~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S--~sK~~~~~G~r~G~~~~~~-~~~~~l~~~~~~~------- 330 (470)
|+++|+|++|+...... ...+.. ..++...| .+|.++ +| +.|++++++ ++.+.+.......
T Consensus 155 ~~~li~D~a~~~g~~~~-----~~~~g~--~~~~~~~s~~~~k~~~-~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~ 225 (390)
T 3b8x_A 155 DIILLEDNCESMGATFN-----NKCAGT--FGLMGTFSSFYSNHIA-TM-EGGCIVTDDEEIYHILLCIRAHGWTRNLPK 225 (390)
T ss_dssp CCEEEEECTTCTTCEET-----TEETTS--SSSEEEEECCTTSSSC-SS-SCEEEEESCHHHHHHHHHHTBTTBSTTSCS
T ss_pred CCEEEEECcCcccCEEC-----Cccccc--ccceEEEEccCCCCCc-cC-CceEEEeCCHHHHHHHHHHHhcCCCccccc
Confidence 99999999998532111 111111 11222222 245553 33 349999875 6777666543211
Q ss_pred ------------------------cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC-
Q 012124 331 ------------------------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP- 385 (470)
Q Consensus 331 ------------------------~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~- 385 (470)
++.++.+...++...+ +++++..++.+++++++.+.|++++|+++..+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l-------~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 298 (390)
T 3b8x_A 226 KNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL-------KKLPRFISVRRKNAEYFLDKFKDHPYLDVQQET 298 (390)
T ss_dssp EETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCC
T ss_pred cccccccccccccccccceeccccccCcCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCC
Confidence 1114555544444433 34567777788889999999998888877543
Q ss_pred -CceE-EEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC---CCCCCC----------------------CCc
Q 012124 386 -QGAF-YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP---GDAFGD----------------------DTC 438 (470)
Q Consensus 386 -~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~p---g~~f~~----------------------~~~ 438 (470)
..++ .+++.++... ..+..++.+.|.++ ||.+.+ |..+.. .+.
T Consensus 299 ~~~~~~~~~i~~~~~~---------~~~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (390)
T 3b8x_A 299 GESSWFGFSFIIKKDS---------GVIRKQLVENLNSA-GIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNG 368 (390)
T ss_dssp SBCCCCEEEEEECTTS---------CCCHHHHHHHHHHT-TBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHE
T ss_pred CCcccEEEEEEecCcC---------cccHHHHHHHHHHC-CCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCE
Confidence 2333 3555665210 01677888888654 999887 321111 025
Q ss_pred EEEEeec--CHHHHHHHHHHH
Q 012124 439 IRISYAA--SLTTLQAAVERI 457 (470)
Q Consensus 439 iRls~~~--~~~~i~~~l~~l 457 (470)
+||++.. ++++++..++.|
T Consensus 369 l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 369 LFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp EEEECCSSCCHHHHHHHHHHT
T ss_pred EEeeCCCCCCHHHHHHHHHhh
Confidence 9999987 899999988765
No 214
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.93 E-value=2.3e-23 Score=213.53 Aligned_cols=334 Identities=14% Similarity=0.119 Sum_probs=228.4
Q ss_pred hHHHHH-HHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc-------C-CCC
Q 012124 109 PVLIAE-AGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-------S-PGD 179 (470)
Q Consensus 109 ~~~~~~-a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~-------~-~gd 179 (470)
|..+.. .+..........|...++..++.+.+.+++.+.+|.+ ++++++|+|+++++..++.++. + +||
T Consensus 121 ~~~~~~~~l~~~~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~--~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~ 198 (515)
T 2jis_A 121 PHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWS--SGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGL 198 (515)
T ss_dssp HHHHHHHHHHHHHCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCS--SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCG
T ss_pred HHHHHHHHHHHHhccCCCchhhchHHHHHHHHHHHHHHHHhCCC--CCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCc
Confidence 554443 3443333344567667777888888888888888864 6899999999999988887763 2 576
Q ss_pred ------eEEEcCCCCCChHHHHHHcCC---EEEEecCcCCCCCccCHHhHhhhccC------CceEEEEcCCCCCcccCC
Q 012124 180 ------EVIIPAPFWVSYPEMARIADA---TPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVY 244 (470)
Q Consensus 180 ------~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~~p~nPtG~~~ 244 (470)
+|++.+++|+++...++..|. +++.+|++. ++.+|++.|++++++ ++++|++++++||||.+.
T Consensus 199 ~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~ 276 (515)
T 2jis_A 199 RTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADE--RGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFD 276 (515)
T ss_dssp GGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC
T ss_pred cccCCeEEEECCCccHHHHHHHHHcCCCCCcEEEEecCC--CCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCcc
Confidence 899999999999999999888 899999863 466999999999964 488899999999999998
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHH--HHHH
Q 012124 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH--FVAA 322 (470)
Q Consensus 245 s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~--~~~~ 322 (470)
+ +++|+++|+++ |+|+++|++|+.+.+....... .+.+..+..+++.|++|.++ .+.++|+++++++ +++.
T Consensus 277 ~---l~~I~~la~~~-g~~l~vD~a~~~~~~~~~~~~~--~~~g~~~aD~v~~s~hK~l~-~p~g~G~l~~~~~~~~~~~ 349 (515)
T 2jis_A 277 P---LEAIADVCQRH-GLWLHVDAAWGGSVLLSQTHRH--LLDGIQRADSVAWNPHKLLA-AGLQCSALLLQDTSNLLKR 349 (515)
T ss_dssp C---HHHHHHHHHHH-TCEEEEEETTGGGGGGCTTTGG--GGTTGGGCSEEEECTTSTTC-CCSCCEEEEESCCSCHHHH
T ss_pred C---HHHHHHHHHHc-CCeEEEehhhhhHHHhChhhHh--hcCCCccCCEEEECcccccC-CCCCeeEEEEeChHHHHHH
Confidence 8 88999999999 9999999999987654321111 12221244588899999986 4467999998766 6554
Q ss_pred HH----HHh-hh-------ccC---------CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCe
Q 012124 323 CN----KIQ-SQ-------FTS---------GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 381 (470)
Q Consensus 323 l~----~~~-~~-------~~~---------~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~ 381 (470)
.. ... .. ... ....+.+.++..++. ...++++.++..++++++.+.|++++|++
T Consensus 350 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 424 (515)
T 2jis_A 350 CHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG-----DQGLERRIDQAFVLARYLVEEMKKREGFE 424 (515)
T ss_dssp HHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred HhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 21 110 00 000 011344444444443 45677888888999999999999988988
Q ss_pred ecC-CCceEEEeeeccCccCCcccCCCCCCC--------HHHHHHHHHHcCCEEE-ECCCCCCCCCcEEEEee---cCHH
Q 012124 382 MSE-PQGAFYLFIDFSTYYGSEAEGFGKIEN--------SESLCRYLLDKAQVAL-VPGDAFGDDTCIRISYA---ASLT 448 (470)
Q Consensus 382 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~L~~~~gI~v-~pg~~f~~~~~iRls~~---~~~~ 448 (470)
+.. +..+.+.|...|..... .....+ ...+.+.|.++ |+.. .+....+..+++|++++ .+++
T Consensus 425 ~~~~~~~~~v~f~~~p~~~~~----~~~~~~~~~~l~~~~~~l~~~l~~~-G~~~~~~~~~~~~~~~lRis~~~~~~t~e 499 (515)
T 2jis_A 425 LVMEPEFVNVCFWFVPPSLRG----KQESPDYHERLSKVAPVLKERMVKE-GSMMIGYQPHGTRGNFFRVVVANSALTCA 499 (515)
T ss_dssp ESSCCSSSEEEEEECCGGGTT----CTTSTTHHHHHHTHHHHHHHHHHHH-TSCEEEEEEETTEEEEEEEECCCTTCCHH
T ss_pred EeCCCCeeEEEEEEeCccccc----cccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEEEECCceEEEEEEeCCCCCCHH
Confidence 765 33455444333421100 000001 11255666666 6433 21111122468999995 3899
Q ss_pred HHHHHHHHHHHHHHh
Q 012124 449 TLQAAVERIKKGLLT 463 (470)
Q Consensus 449 ~i~~~l~~l~~~l~~ 463 (470)
+++.++++|++++++
T Consensus 500 did~~~~~l~~~~~~ 514 (515)
T 2jis_A 500 DMDFLLNELERLGQD 514 (515)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988764
No 215
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.92 E-value=3e-23 Score=205.33 Aligned_cols=279 Identities=14% Similarity=0.176 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH-----HcCCEEEEecCc
Q 012124 134 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-----IADATPVILPTR 208 (470)
Q Consensus 134 ~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~ 208 (470)
.+|++.++++ .|. +++++++++++|+.. +..++++||+|++++|+|.+....+. ..|.+++.++.+
T Consensus 70 ~~l~~~la~l----~g~----~~~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 140 (400)
T 3nmy_A 70 FAYERCVAAL----EGG----TRAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLT 140 (400)
T ss_dssp HHHHHHHHHH----HTC----SEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTT
T ss_pred HHHHHHHHHH----hCC----CCEEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCC
Confidence 4455555554 342 367777777999997 56788999999999999997665543 459999999863
Q ss_pred CCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCC
Q 012124 209 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 288 (470)
Q Consensus 209 ~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~ 288 (470)
|++.+++++++++++|++++|+||||.+++ +++|+++|++| |+++|+|++|....+.. ++ .
T Consensus 141 -------d~~~l~~~i~~~~~~v~~e~~~np~G~~~~---l~~i~~la~~~-g~~livDe~~~~~~~~~----~~-~--- 201 (400)
T 3nmy_A 141 -------DPAAFKAAIRADTKMVWIETPTNPMLKLVD---IAAIAVIARKH-GLLTVVDNTFASPMLQR----PL-S--- 201 (400)
T ss_dssp -------SHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTHHHHCC----GG-G---
T ss_pred -------CHHHHHHHhccCCCEEEEECCCCCCCeeec---HHHHHHHHHHc-CCEEEEECCCcccccCC----hh-h---
Confidence 899999999999999999999999999998 89999999999 99999999998543321 11 1
Q ss_pred CCCceEEEeccCcccccccceeeE--EE-cCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 012124 289 MWERTLTVNGFSKAFAMTGWRLGY--IA-GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365 (470)
Q Consensus 289 ~~~~~i~i~S~sK~~~~~G~r~G~--~~-~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~ 365 (470)
.+.++++.|+||.++.+|.++|. ++ .++++++.+.........+.+++.+.++...++. +....++..+
T Consensus 202 -~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~-------l~~r~~~~~~ 273 (400)
T 3nmy_A 202 -LGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKT-------LPLRMRAHCE 273 (400)
T ss_dssp -GTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTT-------HHHHHHHHHH
T ss_pred -cCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhH-------HHHHHHHHHH
Confidence 24569999999999767777755 33 5788999888877777777888777666666653 3344555677
Q ss_pred HHHHHHHHhccCCCCe-ecCC----------------CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEE
Q 012124 366 RRDFLVKSFGELEGVK-MSEP----------------QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV 428 (470)
Q Consensus 366 ~~~~l~~~L~~~~g~~-~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~ 428 (470)
+.+.+.+.|++.|.+. +..| ..|..++++++... +....+.+.|. -.++.+.
T Consensus 274 ~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~----------~~~~~~~~~l~-~~~~~~s 342 (400)
T 3nmy_A 274 NALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGF----------DAAKRFCEKTE-LFTLAES 342 (400)
T ss_dssp HHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH----------HHHHHHHHHCS-SSEECSC
T ss_pred HHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcH----------HHHHHHHHcCC-cceEecC
Confidence 7778888888776654 2222 23556888886421 02345555442 3344455
Q ss_pred CCCCCC-----------------------CCCcEEEEeec-CHHHHHHHHHHHHHHHH
Q 012124 429 PGDAFG-----------------------DDTCIRISYAA-SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 429 pg~~f~-----------------------~~~~iRls~~~-~~~~i~~~l~~l~~~l~ 462 (470)
.|..+. .++.+|||++. +.++ .++.|+++++
T Consensus 343 ~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~~d---li~dl~~al~ 397 (400)
T 3nmy_A 343 LGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGD---LRGDLERALV 397 (400)
T ss_dssp CCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHH---HHHHHHHHHC
T ss_pred CCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCCHHH---HHHHHHHHHh
Confidence 554331 13679999998 4433 3455555554
No 216
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.92 E-value=5.2e-24 Score=215.77 Aligned_cols=332 Identities=11% Similarity=0.047 Sum_probs=235.4
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCC-------CcEEEecChHHHHHHHHHHhc------
Q 012124 109 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-------DQILVSNGAKQSILQAVLAVC------ 175 (470)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~-------~~i~it~g~~~al~~~~~~l~------ 175 (470)
+..+.+.+...+......|...++..++++.+.+++.+.+|.+... ...++|+|+++++..++.+..
T Consensus 87 ~~~~~~~l~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~ 166 (475)
T 3k40_A 87 PAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKE 166 (475)
T ss_dssp HHHHHHHHHHHHCCCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHH
Confidence 4455666777776667778888899999999999999999975321 368999999999887776652
Q ss_pred -------------CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCC------ceEEEEcCC
Q 012124 176 -------------SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK------SRLLILCSP 236 (470)
Q Consensus 176 -------------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~i~l~~p 236 (470)
.+++.|++++++|.++...++..|++++.+|++ .++ +|++.|+++++++ +.+|+++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d--~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~ 243 (475)
T 3k40_A 167 VKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSE--NHR-MRGAALEKAIEQDVAEGLIPFYAVVTLG 243 (475)
T ss_dssp HHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECCB--TTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBS
T ss_pred hhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCceEEEECC--CCC-cCHHHHHHHHHHHHHCCCccEEEEEEec
Confidence 134689999999999999999999999999996 345 9999999999653 566778889
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC
Q 012124 237 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 316 (470)
Q Consensus 237 ~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~ 316 (470)
+|+||.+-+ +++|+++|++| |+++++|++|+...+........ +.+......+..+++|.++ ....+|+++..
T Consensus 244 ~t~~G~~~~---l~~I~~la~~~-~~~lhvD~A~~~~~~~~~~~~~~--~~gi~~~Ds~~~~~hK~l~-~p~g~g~l~~~ 316 (475)
T 3k40_A 244 TTNSCAFDY---LDECGPVGNKH-NLWIHVDAAYAGSAFICPEYRHL--MKGIESADSFNFNPHKWML-VNFDCSAMWLK 316 (475)
T ss_dssp CTTTCCBCC---HHHHHHHHHHT-TCEEEEECTTGGGGGGSGGGGGG--GTTGGGCSEEEECHHHHSS-CCSSCEEEEES
T ss_pred CCCCcCcCC---HHHHHHHHHHh-CCeEEEeHHhHHHHHhCHhhHHH--hcCcccCCEEEECchhccC-CCCceEEEEEe
Confidence 999999977 88999999999 99999999998743322111111 1111123467788999886 44567887765
Q ss_pred HH-HH-HHHHHHhhhc--------------cC-CC---ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 012124 317 KH-FV-AACNKIQSQF--------------TS-GA---SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 376 (470)
Q Consensus 317 ~~-~~-~~l~~~~~~~--------------~~-~~---~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 376 (470)
+. .+ +.+.....+. .. +. ..+.+.++...+. .+.++++.+++.++++++.+.|++
T Consensus 317 ~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~L~~ 391 (475)
T 3k40_A 317 DPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYG-----VENLQAHIRRHCNFAKQFGDLCVA 391 (475)
T ss_dssp SGGGC---------------------------CCCGGGTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 42 32 2221100000 00 01 1233344444442 466788888999999999999999
Q ss_pred CCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHHHHHH
Q 012124 377 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAA 453 (470)
Q Consensus 377 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~---~~~~i~~~ 453 (470)
++|+++..+.....++++++..- ....++.++|.+++++.+.|+..++ ..++|++++. ++++|+.+
T Consensus 392 ~~g~~l~~~~~~~iv~f~~~~~~----------~~~~~l~~~L~~~g~~~~~~~~~~g-~~~lR~~~~~~~tt~~di~~~ 460 (475)
T 3k40_A 392 DSRFELAAEINMGLVCFRLKGSN----------ERNEALLKRINGRGHIHLVPAKIKD-VYFLRMAICSRFTQSEDMEYS 460 (475)
T ss_dssp STTEEESSCCBTTEEEEEESSCH----------HHHHHHHHHHHHHTSCBCEEEEETT-EEEEEEECCCTTCCHHHHHHH
T ss_pred CCCEEEecCCceEEEEEEeCCch----------HHHHHHHHHHHhCCcEEEEeeEECC-EEEEEEEeCCCCCCHHHHHHH
Confidence 99998876554444666765310 0357888899888666666654433 5689999874 78999999
Q ss_pred HHHHHHHHHhhCC
Q 012124 454 VERIKKGLLTLRP 466 (470)
Q Consensus 454 l~~l~~~l~~~~~ 466 (470)
+++|+++++++..
T Consensus 461 ~~~i~~~~~~~~~ 473 (475)
T 3k40_A 461 WKEVSAAADEMEQ 473 (475)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887643
No 217
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.92 E-value=6.9e-24 Score=215.41 Aligned_cols=331 Identities=14% Similarity=0.103 Sum_probs=238.6
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCC--------CcEEEecChHHHHHHHHHHhcC----
Q 012124 109 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP--------DQILVSNGAKQSILQAVLAVCS---- 176 (470)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~--------~~i~it~g~~~al~~~~~~l~~---- 176 (470)
|..+.+.+..++......|...++..++++.+.+++.+.+|.+... ...++|+|+++++..++.+..+
T Consensus 92 ~~~~~~~~~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~ 171 (481)
T 4e1o_A 92 PSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKIL 171 (481)
T ss_dssp HHHHHHHHHHHHCCCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHH
Confidence 4556677777777777889888999999999999999999975332 3678999999998887776532
Q ss_pred ---------------CCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCC------ceEEEEcC
Q 012124 177 ---------------PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK------SRLLILCS 235 (470)
Q Consensus 177 ---------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~i~l~~ 235 (470)
+++.|++++++|.++...++..|++++.+|++ .++.+|++.|+++++++ +.+|+.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~--~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~ 249 (481)
T 4e1o_A 172 EMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVD--DNFSLRGEALQKAIEEDKQRGLVPVFVCATL 249 (481)
T ss_dssp HHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEB
T ss_pred HhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEcC--CCCcCCHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 57899999999999999999999999999985 45679999999999653 66677888
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEc
Q 012124 236 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 315 (470)
Q Consensus 236 p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~ 315 (470)
++|+||.+-+ +++|+++|++| |+|+++|++|+...+........ +.+...-..+..+++|.++.| ..+|+++.
T Consensus 250 ~~t~~G~id~---l~~I~~la~~~-~~~lhvDaA~g~~~~~~~~~~~~--~~gi~~aDsi~~~~hK~l~~p-~g~g~l~~ 322 (481)
T 4e1o_A 250 GTTGVCAFDC---LSELGPICARE-GLWLHIDAAYAGTAFLCPEFRGF--LKGIEYADSFTFNPSKWMMVH-FDCTGFWV 322 (481)
T ss_dssp SCTTTCCBCC---HHHHHHHHHHH-TCEEEEECTTGGGGGGSGGGGGG--GTTGGGCSEEEECHHHHSSCC-SSCEEEEE
T ss_pred CCCCCcCcCC---HHHHHHHHHHc-CCeEEeehhhHHHHHhChhhHHH--hcCcccCCEEEEChHHhcCCC-CceEEEEE
Confidence 9999999877 88999999999 99999999998754322111111 111112246677899998744 45677665
Q ss_pred C-HHHHHHHHHHh-hhc--------------c--C--CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012124 316 P-KHFVAACNKIQ-SQF--------------T--S--GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 375 (470)
Q Consensus 316 ~-~~~~~~l~~~~-~~~--------------~--~--~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 375 (470)
. +..+....... .+. . . ....+.+.++...+. .+.++++.++..++++++.+.|+
T Consensus 323 ~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~L~ 397 (481)
T 4e1o_A 323 KDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFG-----VKNLQAHVRHGTEMAKYFESLVR 397 (481)
T ss_dssp SBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 44332211000 000 0 0 012444455555442 56788888899999999999999
Q ss_pred cCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHHHHH
Q 012124 376 ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQA 452 (470)
Q Consensus 376 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~---~~~~i~~ 452 (470)
+++|+++..+....+++++++..- ....++.++|.+++.+.+.|+.. ....++|++++. ++++|++
T Consensus 398 ~~~g~~~~~~~~~~~v~f~~~~~~----------~~~~~l~~~L~~~g~~~~~~~~~-~g~~~lR~~~~~~~tt~~di~~ 466 (481)
T 4e1o_A 398 NDPSFEIPAKRHLGLVVFRLKGPN----------SLTENVLKEIAKAGRLFLIPATI-QDKLIIRFTVTSQFTTRDDILR 466 (481)
T ss_dssp TCTTEECCSCCCSSEEEEEESSCH----------HHHHHHHHHHHHHCSSBCEEEEE-TTEEEEEEECCCTTCCHHHHHH
T ss_pred cCCCeEEecCCceeEEEEEeCCch----------HHHHHHHHHHHhCCeEEEEeeEE-CCEEEEEEEeCCCCCCHHHHHH
Confidence 999998875554445677775320 03578888888875465555432 234689999875 7899999
Q ss_pred HHHHHHHHHHhh
Q 012124 453 AVERIKKGLLTL 464 (470)
Q Consensus 453 ~l~~l~~~l~~~ 464 (470)
++++|+++++++
T Consensus 467 ~~~~i~~~~~~l 478 (481)
T 4e1o_A 467 DWNLIRDAATLI 478 (481)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 218
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.92 E-value=2.5e-23 Score=209.60 Aligned_cols=335 Identities=15% Similarity=0.122 Sum_probs=212.5
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCC-CCCCCC---cC---cHHHHHHHHHHHHHHcCCCCCCCc---EEEecChH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGF-TRYTPN---AG---TLELRSAICHKLKEENGLSYTPDQ---ILVSNGAK 164 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~-~~y~~~---~g---~~~lr~~ia~~l~~~~g~~~~~~~---i~it~g~~ 164 (470)
..|.|-.+ |++ +++.+++++...+.+.. .+|+.. .| ..+|++...+++.+.+|. +.+. .+++++++
T Consensus 55 ~~i~lias-~n~-~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~--~~~~~~~~v~~~sGt 130 (490)
T 2a7v_A 55 RGLELIAS-ENF-CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDL--DPAQWGVNVQPYSGS 130 (490)
T ss_dssp HSEECCTT-CCC-CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTC--CTTTEEEECCCSSHH
T ss_pred cCceEECC-CCC-CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCC--CcccCceEEeCCchH
Confidence 34667653 333 68999999988876532 233211 12 246776666788777885 3332 34556788
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCCCChHH--------HHHHcCCE--EEEecCcCCCCCccCHHhHhhhcc-CCceEEEE
Q 012124 165 QSILQAVLAVCSPGDEVIIPAPFWVSYPE--------MARIADAT--PVILPTRISENFLLDPKVLESKLT-EKSRLLIL 233 (470)
Q Consensus 165 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~~--~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l 233 (470)
+|+..++.++++|||+|++.++.|.++.. .+...|.. ++++++++ .++.+|+|.|+++++ .++++|++
T Consensus 131 ~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~-~~~~iD~d~le~~l~~~~~klIi~ 209 (490)
T 2a7v_A 131 PANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNP-KTGLIDYNQLALTARLFRPRLIIA 209 (490)
T ss_dssp HHHHHHHHHHCCSCEECCC-------------------------------CCBCT-TTCSBCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEeccccc-ccCCcCHHHHHHHHhhcCCcEEEE
Confidence 99999999999999999999998865431 23345554 44455543 345799999999985 47898888
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEecccc-ccccCCCCcccccccCCCCCceEEEeccCcccccccceeeE
Q 012124 234 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 312 (470)
Q Consensus 234 ~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~-~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~ 312 (470)
+.++||+ ..+ +++|.++|++| |+++++|+++. ++.+.+....++. ...+++.|+||++ .|.|.|+
T Consensus 210 ~~s~~~~--~~d---l~~i~~ia~~~-g~~livD~Ah~~glv~~g~~~~~~~------~aDiv~~S~hK~l--~Gp~GG~ 275 (490)
T 2a7v_A 210 GTSAYAR--LID---YARMREVCDEV-KAHLLADMAHISGLVAAKVIPSPFK------HADIVTTTTHKTL--RGARSGL 275 (490)
T ss_dssp CCSSCCS--CCC---HHHHHHHHHHT-TCEEEEECGGGHHHHHTTSSCCGGG------TCSEEEEESSGGG--CSCSCEE
T ss_pred cCCCCCC--ccc---HHHHHHHHHHc-CCEEEEccccccccccCCcCCCCCC------CCCEEEECCcccC--ccccchh
Confidence 8888885 445 88999999999 99999999975 3434332222221 2238899999987 4667899
Q ss_pred EEcCHH---------------HHHHHHHHhhhccC-CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 012124 313 IAGPKH---------------FVAACNKIQSQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 376 (470)
Q Consensus 313 ~~~~~~---------------~~~~l~~~~~~~~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 376 (470)
++++++ +.+.+.+....... +++.....++..++.... ....++..+++.++++++.+.|.+
T Consensus 276 i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~--~~~~~~~~~~~~~na~~L~~~L~~ 353 (490)
T 2a7v_A 276 IFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQAC--TPMFREYSLQVLKNARAMADALLE 353 (490)
T ss_dssp EEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 998764 55666655443332 234443444444444311 233467778888899999999998
Q ss_pred CCCCeecCC-CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-----CCCcEEEEee------
Q 012124 377 LEGVKMSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-----DDTCIRISYA------ 444 (470)
Q Consensus 377 ~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~-----~~~~iRls~~------ 444 (470)
. |+++..+ ...+++|++++.. + .+..++.+.| ++.||.+..+..++ .++.|||+..
T Consensus 354 ~-G~~v~~~~t~t~lv~vdl~~~-g---------~~~~~~~~~L-~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g 421 (490)
T 2a7v_A 354 R-GYSLVSGGTDNHLVLVDLRPK-G---------LDGARAERVL-ELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQ 421 (490)
T ss_dssp T-TCEEGGGSCSSSEEEEECTTT-T---------CCHHHHHHHH-HHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTT
T ss_pred c-CcEEecCCCCCeEEEEEeCCC-C---------CCHHHHHHHH-HhCCeEEecCccCCCCCCCCCCceEecccccccCC
Confidence 7 8887642 3456688888542 0 1566666655 55699998654443 2468999763
Q ss_pred cCHHHHHHHHHHHHHHHH
Q 012124 445 ASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 445 ~~~~~i~~~l~~l~~~l~ 462 (470)
.++++++++++.|.++++
T Consensus 422 ~~~~d~~~~~~~i~~~l~ 439 (490)
T 2a7v_A 422 FREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 278999999999888875
No 219
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.91 E-value=3.7e-23 Score=204.50 Aligned_cols=271 Identities=15% Similarity=0.150 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHHc-------CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEE---ecChHHHHHHHHHHhcCCCC
Q 012124 110 VLIAEAGINAIRE-------GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILV---SNGAKQSILQAVLAVCSPGD 179 (470)
Q Consensus 110 ~~~~~a~~~~~~~-------~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~i---t~g~~~al~~~~~~l~~~gd 179 (470)
..+++++.+.... ....| +..|..+|++.+++++ | .+..++ ++|+++++..++.++++|||
T Consensus 32 ~~vl~a~~~~~~~~~~~~~~~~~~y-~~~~~~~Le~~lA~l~----g----~e~alv~p~~~sGt~Ai~~al~all~~GD 102 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFHPSTGYGY-DDEGRDTLERVYATVF----K----TEAALVRPQIISGTHAISTVLFGILRPDD 102 (409)
T ss_dssp HHHHHHHHHTTCCGGGGCCCCTTCT-TCHHHHHHHHHHHHHH----T----CSEEEEETTSCSHHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHhhhhhhccCCCcCCCC-ChhHHHHHHHHHHHHh----C----CCcEEEECCCccHHHHHHHHHHHhcCCCC
Confidence 4455666654311 12345 3446677888777775 3 234555 88999999999999999999
Q ss_pred eEEEcC-CCCCChHHH----------HHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcC----CCCCcccCC
Q 012124 180 EVIIPA-PFWVSYPEM----------ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS----PSNPTGSVY 244 (470)
Q Consensus 180 ~Vlv~~-p~y~~~~~~----------~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~----p~nPtG~~~ 244 (470)
+|++++ |.|..+... ++..|++++.+++++ ++.+|++.+++++++++++|++++ |+||||.+.
T Consensus 103 ~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~--~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~ 180 (409)
T 3jzl_A 103 ELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLE--NGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIE 180 (409)
T ss_dssp EEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCT--TSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHH
T ss_pred EEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCC--CCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccc
Confidence 999998 999998854 466899999999864 356899999999999999999988 899998765
Q ss_pred CHHHHHHHHHHHHh--CCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccc-ceeeEEEcCHHHHH
Q 012124 245 PKNLLDEIARIVAK--HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVA 321 (470)
Q Consensus 245 s~~~~~~l~~~~~~--~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~ 321 (470)
+ +++|+++|++ + |+++|+|++|+.+.+... +. . .+..++++|+||.++.+| .+.||+++++++++
T Consensus 181 ~---l~~I~~la~~~~~-~~~livD~a~~~~~~~~~---p~-~----~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~ 248 (409)
T 3jzl_A 181 K---IKEMIVFVKNINP-EVIVFVDNCYGEFVEYQE---PP-E----VGADIIAGSLIKNPGGGLAKTGGYIAGKEALVD 248 (409)
T ss_dssp H---HHHHHHHHHHHCT-TCEEEEECTTCTTTSSCC---SG-G----GTCSEEEEETTSGGGTTTCSSCEEEEECHHHHH
T ss_pred c---HHHHHHHHHhhCC-CCEEEEeCCcccccccCC---cc-c----cCCeEEEECccccCCccCCceEEEEEeCHHHHH
Confidence 4 9999999999 9 999999999998654321 11 1 244599999999997444 34699999999999
Q ss_pred HHHHHhhhc----cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC----ceEEEee
Q 012124 322 ACNKIQSQF----TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFYLFI 393 (470)
Q Consensus 322 ~l~~~~~~~----~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~g~~~~~ 393 (470)
.+....... ..++....+.++...+ +....++++..+++.++.+.|+++ |+++.+.. ..+.+.+
T Consensus 249 ~l~~~~~~~~~g~~~g~~~~~~~~~l~gl-------~~~~~r~~~~~~~a~~la~~L~~~-g~~v~p~~~~~~~~~i~~i 320 (409)
T 3jzl_A 249 LCGYRLTTPGIGREAGASLYSLLEMYQGF-------FLAPHVTAQAIKGARFTAAMLAEF-GVEADPVWDAPRTDLIQSV 320 (409)
T ss_dssp HHHHHHSCTTTGGGCCCCTTCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHT-TCEEESCTTSCCSSSCCEE
T ss_pred HHHHHhccccccccccccHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCCccEEEEE
Confidence 988754321 1222221123332222 234456667788888999999888 66664322 2223555
Q ss_pred eccCccCCcccCCCCCCCHHHHHHHHHHc
Q 012124 394 DFSTYYGSEAEGFGKIENSESLCRYLLDK 422 (470)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 422 (470)
.+++. +....+++.|.+.
T Consensus 321 ~l~~~-----------~~~~~~~~~L~~~ 338 (409)
T 3jzl_A 321 SFHNK-----------EKMVAFAQAIQAA 338 (409)
T ss_dssp ECSCH-----------HHHHHHHHHHHHT
T ss_pred EeCCH-----------HHHHHHHHHHHhc
Confidence 66532 1456788887654
No 220
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.91 E-value=1.9e-23 Score=208.29 Aligned_cols=257 Identities=15% Similarity=0.180 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcC-CCCCChHHHH----------HHcCCEEE
Q 012124 135 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA-PFWVSYPEMA----------RIADATPV 203 (470)
Q Consensus 135 ~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~-p~y~~~~~~~----------~~~g~~~~ 203 (470)
..++.+.+++.+.+|.+....+++++ ++++++..++.++++|||+|++++ |.|..+...+ +..|++++
T Consensus 65 ~~~~~l~~~la~~~g~~~~~~~i~~~-sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~ 143 (431)
T 3ht4_A 65 IGRDTLEKVYADVFGAEAGLVRPQII-SGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYN 143 (431)
T ss_dssp HHHHHHHHHHHHHTTCSEECCBTTSC-SHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEE
T ss_pred hhHHHHHHHHHHHhCCCcccccceee-CHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEE
Confidence 44777777777777754333344455 568999999999999999999998 9999988655 44799999
Q ss_pred EecCcCCCCCccCHHhHhhhccCCceEEEEc-CCCCCcccCCCHHHHHHHHHHHHh--CCCEEEEEeccccccccCCCCc
Q 012124 204 ILPTRISENFLLDPKVLESKLTEKSRLLILC-SPSNPTGSVYPKNLLDEIARIVAK--HPRLLVLSDEIYEHIIYAPATH 280 (470)
Q Consensus 204 ~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~-~p~nPtG~~~s~~~~~~l~~~~~~--~~~~~iI~Dd~~~~~~~~~~~~ 280 (470)
.++.+.+ +.+|++.|++++++++++|+++ +||||+|..++.+++++|+++|++ + |+++|+|++|+.+.+...
T Consensus 144 ~v~~~~~--~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~-~~~livDea~~~~~~~~~-- 218 (431)
T 3ht4_A 144 AVPLTEG--GLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKP-DVVVFVDNCYGEFIEEQE-- 218 (431)
T ss_dssp ECCBCTT--SSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCT-TCEEEEECTTCTTSSSCC--
T ss_pred EeCCCCC--CCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCC-CCEEEEeCCChhhccCCC--
Confidence 9998743 5699999999999999999997 689999999999999999999999 9 999999999998765432
Q ss_pred ccccccCCCCCceEEEeccCccccc-ccceeeEEEcCHHHHHHHHHHhhhccCC----CChHHHHHHHHHHhcCCCChHH
Q 012124 281 TSFASLPGMWERTLTVNGFSKAFAM-TGWRLGYIAGPKHFVAACNKIQSQFTSG----ASSISQKAGVAALGLGYAGGEV 355 (470)
Q Consensus 281 ~~~~~~~~~~~~~i~i~S~sK~~~~-~G~r~G~~~~~~~~~~~l~~~~~~~~~~----~~~~~q~a~~~~l~~~~~~~~~ 355 (470)
+. .+ +..++++|+||.+|. .+...||+++++++++.+.........+ ++...+.++...+. .
T Consensus 219 -~~-~~----g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~-------~ 285 (431)
T 3ht4_A 219 -PC-HV----GADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFF-------L 285 (431)
T ss_dssp -GG-GT----TCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHH-------H
T ss_pred -cc-cc----CCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHHHHhHhh-------h
Confidence 11 11 335999999999752 1134499999999999988755432221 21111222333232 3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeecCC----CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHc
Q 012124 356 VSKMVKAFRERRDFLVKSFGELEGVKMSEP----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 422 (470)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 422 (470)
...+.++..++.+++.+.|+++ |+++.+. ..++.+.+.+++.. ...++++.|.+.
T Consensus 286 ~~~~~~~~~~~a~~l~~~L~~~-g~~v~p~~~~~~~~li~~i~l~~~~-----------~~~~~~~~l~~~ 344 (431)
T 3ht4_A 286 APHVAGQALKGAIFTAAFLEKL-GMNTSPAWNAPRTDLIQSVQFDDKD-----------RMIAFCQAIQYA 344 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TCCEESCTTSCCSSSCCEEECCCHH-----------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-cCEecCCCCCCCccEEEEEEeCCHH-----------HHHHHHHHHHhc
Confidence 3455666777888888888877 5555322 23334566665421 456788887654
No 221
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.91 E-value=5.9e-23 Score=205.11 Aligned_cols=216 Identities=12% Similarity=0.095 Sum_probs=156.9
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEe-cC
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVIL-PT 207 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v-~~ 207 (470)
..++++.+++++ |. . +.+ +++++++++..++.+++++||+|+++.++|+++...+ +..|++++.+ +.
T Consensus 60 ~~~l~~~la~~~----g~--~-~~v-~~~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 131 (421)
T 2ctz_A 60 VDVLEKRLAALE----GG--K-AAL-ATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSRE 131 (421)
T ss_dssp HHHHHHHHHHHH----TC--S-EEE-EESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTT
T ss_pred HHHHHHHHHHHh----CC--C-ceE-EecCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCC
Confidence 467888888876 32 1 344 4555599999999999999999999999999887765 7789999998 75
Q ss_pred cCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccc-cccccCCCCccccccc
Q 012124 208 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY-EHIIYAPATHTSFASL 286 (470)
Q Consensus 208 ~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~-~~~~~~~~~~~~~~~~ 286 (470)
+ |++.+++++++++++|++++++||||.+++ +++|.++|+++ |+++|+|++| +.. +... ++ .
T Consensus 132 ~-------d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~-g~~livD~~~~~~g-~~~~---~~-~- 194 (421)
T 2ctz_A 132 E-------RPEEFLALTDEKTRAWWVESIGNPALNIPD---LEALAQAAREK-GVALIVDNTFGMGG-YLLR---PL-A- 194 (421)
T ss_dssp C-------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHH-TCEEEEECGGGGGG-TSCC---GG-G-
T ss_pred C-------CHHHHHHhhccCCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCccccc-ccCC---cc-c-
Confidence 2 899999999999999999999999999999 88999999999 9999999999 532 2221 11 1
Q ss_pred CCCCCceEEEeccCcccccccceeeEEEcC---HHH----HHHHHH----------------------H----hhhccCC
Q 012124 287 PGMWERTLTVNGFSKAFAMTGWRLGYIAGP---KHF----VAACNK----------------------I----QSQFTSG 333 (470)
Q Consensus 287 ~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~---~~~----~~~l~~----------------------~----~~~~~~~ 333 (470)
.+..+++.|++|.++.+|.|+|++++. .++ .+.+.. . .......
T Consensus 195 ---~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~ 271 (421)
T 2ctz_A 195 ---WGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQA 271 (421)
T ss_dssp ---GTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCC
T ss_pred ---cCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCC
Confidence 234589999999998789999988874 112 112210 0 0112224
Q ss_pred CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec
Q 012124 334 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 383 (470)
Q Consensus 334 ~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 383 (470)
.+++...++...++. +....++..++.+.+.+.|++.|++...
T Consensus 272 ~~~~~a~~~~~~l~~-------l~~r~~~~~~~a~~l~~~L~~~p~v~~v 314 (421)
T 2ctz_A 272 LGPFEAWVVLLGMET-------LSLRAERHVENTLHLAHWLLEQPQVAWV 314 (421)
T ss_dssp CCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHHTCTTEEEE
T ss_pred CCHHHHHHHHcCcch-------HHHHHHHHHHhHHHHHHHHHhCCCeeEE
Confidence 455554444444432 3334445557888888899888887654
No 222
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.90 E-value=4.6e-23 Score=204.46 Aligned_cols=254 Identities=11% Similarity=0.078 Sum_probs=180.6
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEE---ecChHHHHHHHHHHhcCCCCeEEEcC-CCCCChHHH----------
Q 012124 129 PNAGTLELRSAICHKLKEENGLSYTPDQILV---SNGAKQSILQAVLAVCSPGDEVIIPA-PFWVSYPEM---------- 194 (470)
Q Consensus 129 ~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~i---t~g~~~al~~~~~~l~~~gd~Vlv~~-p~y~~~~~~---------- 194 (470)
+..|..+|++.+++++ |. +..++ ++|+++++..++.++++|||+|++++ |.|.++...
T Consensus 71 ~~~~~~~Le~~lA~l~----g~----e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~ 142 (427)
T 3i16_A 71 GDIGRDSLDAVYARVF----NT----ESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMG 142 (427)
T ss_dssp TCHHHHHHHHHHHHHH----TC----SEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSC
T ss_pred CHHHHHHHHHHHHHHh----CC----cceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHH
Confidence 3445667777777765 42 33355 78889999999999999999999999 999988744
Q ss_pred -HHHcCCEEEEecCcCCCCCccCHHhHhhhcc--CCceEEEEcC----CCCCcccCCCHHHHHHHHHHHHh--CCCEEEE
Q 012124 195 -ARIADATPVILPTRISENFLLDPKVLESKLT--EKSRLLILCS----PSNPTGSVYPKNLLDEIARIVAK--HPRLLVL 265 (470)
Q Consensus 195 -~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~--~~~~~i~l~~----p~nPtG~~~s~~~~~~l~~~~~~--~~~~~iI 265 (470)
++..|++++.++++.+ +.+|++.++++++ +++++|++++ |+||||.+ .++++|+++|++ + |+++|
T Consensus 143 ~l~~~G~~~~~v~~~~~--g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i---~dl~~i~~la~~~~~-g~~li 216 (427)
T 3i16_A 143 SLKEFGINYKQVDLKED--GKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLI---EDIKSIVDCVKNIRK-DIICF 216 (427)
T ss_dssp CTGGGTCEEEECCCCTT--SSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCH---HHHHHHHHHHHHHCT-TSEEE
T ss_pred HHHHcCCEEEEecCccC--CCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccH---HHHHHHHHHHHHhCC-CCEEE
Confidence 4567999999998644 3589999999998 7899999988 88888765 559999999999 9 99999
Q ss_pred EeccccccccCCCCcccccccCCCCCceEEEeccCccccccc-ceeeEEEcCHHHHHHHHHHhhhccCC--CCh-HHHHH
Q 012124 266 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSG--ASS-ISQKA 341 (470)
Q Consensus 266 ~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~--~~~-~~q~a 341 (470)
+|++|..+.+... ++ . .+..++++|+||.+|.+| .+.||+++++++++.+.........+ .++ +. +
T Consensus 217 vD~a~~~~~~~~~---p~-~----~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~--~ 286 (427)
T 3i16_A 217 VDNCYGEFMDTKE---PT-D----VGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTFG--V 286 (427)
T ss_dssp EECTTTTTSSSSC---GG-G----GTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTT--C
T ss_pred EECCCccccccCC---cc-c----cCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCccCCccHH--H
Confidence 9999998654321 11 1 234599999999997444 56799999999999988754322221 111 22 1
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc----eEEEeeeccCccCCcccCCCCCCCHHHHHH
Q 012124 342 GVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG----AFYLFIDFSTYYGSEAEGFGKIENSESLCR 417 (470)
Q Consensus 342 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 417 (470)
+..+++. -+....++++..+++.++.+.|+++ |+++.+..+ .+.+.+.+.+. +...+|++
T Consensus 287 a~~~l~g----l~~~~~r~~~~~~~a~~la~~L~~~-g~~V~p~~~~~~~~~i~~i~l~~~-----------~~~~~f~~ 350 (427)
T 3i16_A 287 VRSMYQG----LFLAPHISMEALKGAILCSRIMELA-GFEVMPKYDEKRSDIIQSIKFNDK-----------DKLIEFCK 350 (427)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHT-TCEEESCTTSCCSSSCEEEECSSH-----------HHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCCCCCccEEEEEEECCH-----------HHHHHHHH
Confidence 2222221 2334566777788888899999888 666643322 22455566432 14567888
Q ss_pred HHHHc
Q 012124 418 YLLDK 422 (470)
Q Consensus 418 ~L~~~ 422 (470)
.|...
T Consensus 351 ~l~~~ 355 (427)
T 3i16_A 351 GIQTG 355 (427)
T ss_dssp HHHHT
T ss_pred HHhhc
Confidence 77544
No 223
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.90 E-value=7e-23 Score=203.13 Aligned_cols=269 Identities=12% Similarity=0.108 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHc-------CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEE---ecChHHHHHHHHHHhcCCCC
Q 012124 110 VLIAEAGINAIRE-------GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILV---SNGAKQSILQAVLAVCSPGD 179 (470)
Q Consensus 110 ~~~~~a~~~~~~~-------~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~i---t~g~~~al~~~~~~l~~~gd 179 (470)
+.+.+++.+.... ....| +..|..+|++.+++++ | .+..++ ++|+++++..++.++++|||
T Consensus 47 ~~Vl~a~~~~~~~~~~~~~~~gy~Y-~~~g~~~Le~~lA~l~----g----~e~alv~p~~~sGt~A~~~al~all~pGD 117 (427)
T 3hvy_A 47 LKVLKAFQEERISESHFTNSSGYGY-NDIGRDSLDRVYANIF----N----TESAFVRPHFVNGTHAIGAALFGNLRPND 117 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCT-TCHHHHHHHHHHHHHH----T----CSEEEEETTCCSHHHHHHHHHHHTCCTTC
T ss_pred HHHHHHHHHHHHHHHhcccCcCCCC-CchhHHHHHHHHHHHh----C----CCceEEeCCCCcHHHHHHHHHHHhcCCCC
Confidence 4566666654321 12334 3346677777777765 3 234566 78889999999999999999
Q ss_pred eEEEcC-CCCCChHH-----------HHHHcCCEEEEecCcCCCCCccCHHhHhhhcc--CCceEEEEcC----CCCCcc
Q 012124 180 EVIIPA-PFWVSYPE-----------MARIADATPVILPTRISENFLLDPKVLESKLT--EKSRLLILCS----PSNPTG 241 (470)
Q Consensus 180 ~Vlv~~-p~y~~~~~-----------~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~--~~~~~i~l~~----p~nPtG 241 (470)
+|++++ |.|.++.. .++..|++++.++. . ++.+|+|.++++++ +++|+|++++ |+||||
T Consensus 118 ~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~-~--~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg 194 (427)
T 3hvy_A 118 TMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL-K--DGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSL 194 (427)
T ss_dssp EEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC-B--TTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCC
T ss_pred EEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecC-C--CCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccc
Confidence 999999 99998874 34568999999998 2 34699999999998 8999999988 888887
Q ss_pred cCCCHHHHHHHHHHHHh--CCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccc-ceeeEEEcCHH
Q 012124 242 SVYPKNLLDEIARIVAK--HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKH 318 (470)
Q Consensus 242 ~~~s~~~~~~l~~~~~~--~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G-~r~G~~~~~~~ 318 (470)
.+ .++++|+++|++ + |+++|+|++|+.+.+... ++ . .+..++++|+||.++.+| .+.||++++++
T Consensus 195 ~v---~dl~~i~~ia~~~~~-g~~livD~a~~~~~~~~~---p~-~----~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~ 262 (427)
T 3hvy_A 195 RI---AEIAEIIKSIREVNE-NVIVFVDNCYGEFVEEKE---PT-D----VGADIIAGSLIKNIGGGIATTGGYIAGKEE 262 (427)
T ss_dssp CH---HHHHHHHHHHHHHCS-SSEEEEECTTCTTTSSSC---GG-G----GTCSEEEEETTSGGGTTTCCSCEEEEECHH
T ss_pred cH---HHHHHHHHHHHHhCC-CCEEEEECCccccccCCC---Cc-c----cCCeEEEECCcccccccccceEEEEEECHH
Confidence 65 459999999999 8 999999999988654322 11 1 234599999999997333 45699999999
Q ss_pred HHHHHHHHhhhccCC---CChHH-HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc----eEE
Q 012124 319 FVAACNKIQSQFTSG---ASSIS-QKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG----AFY 390 (470)
Q Consensus 319 ~~~~l~~~~~~~~~~---~~~~~-q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~----g~~ 390 (470)
+++.+.........+ .+++. +.++...+ .....++++..++..++.+.|+++ |+++.+..+ .+.
T Consensus 263 li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl-------~~~~~r~~~~~~~a~~la~~L~~~-g~~V~p~~~~~~~~li 334 (427)
T 3hvy_A 263 YVTQATFRVTVPGIGGECGSTFGVMRSLYEGL-------FMAPHVTIEAVKGAVFCARIMELA-GFDVLPKYNDKRTDII 334 (427)
T ss_dssp HHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHT-TCEEESCTTSCCSSSE
T ss_pred HHHHHHHHhhcCCcccccCCCHHHHHHHHHhH-------hHHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCCCCCceEE
Confidence 999988754322211 12122 22222222 234456667778888889999888 666643322 224
Q ss_pred EeeeccCccCCcccCCCCCCCHHHHHHHHHH
Q 012124 391 LFIDFSTYYGSEAEGFGKIENSESLCRYLLD 421 (470)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 421 (470)
+.+.+.+. +...++++.|..
T Consensus 335 ~~~~l~~~-----------~~~~~f~~~l~~ 354 (427)
T 3hvy_A 335 QAIKFNDE-----------KKLIDFIKGIQT 354 (427)
T ss_dssp EEEECSSH-----------HHHHHHHHHHHH
T ss_pred EEEeCCCH-----------HHHHHHHHHhcc
Confidence 55666432 145677777754
No 224
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.90 E-value=2.5e-22 Score=211.10 Aligned_cols=311 Identities=12% Similarity=0.065 Sum_probs=205.1
Q ss_pred cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH-HHHcCCEEEEecCcC
Q 012124 131 AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM-ARIADATPVILPTRI 209 (470)
Q Consensus 131 ~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~v~~~~ 209 (470)
.-..++++.+|+++ |. ...+++++|+++++..++.+++++||+|+++.++|.++... ++..|++++.++...
T Consensus 173 ~~i~e~e~~lA~~~----ga---e~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~ 245 (730)
T 1c4k_A 173 GPAVAAEKHAARVY----NA---DKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNR 245 (730)
T ss_dssp THHHHHHHHHHHHT----TC---SEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEE
T ss_pred HHHHHHHHHHHHHH----CC---CcEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCc
Confidence 33467777777764 43 24588999999999999999999999999999999998887 888999999988753
Q ss_pred CCCCc----cCHHhH-----hhhccCC------c----eEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccc
Q 012124 210 SENFL----LDPKVL-----ESKLTEK------S----RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 270 (470)
Q Consensus 210 ~~~~~----~d~~~l-----~~~l~~~------~----~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~ 270 (470)
+ .++ +|++.| +++++++ + +++++++| ||+|.+.+ +++|+++|+++ +++||+|++|
T Consensus 246 ~-~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~-g~~livDeAh 319 (730)
T 1c4k_A 246 N-PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHL-CDYIEFDSAW 319 (730)
T ss_dssp C-TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGG-BSEEEEECTT
T ss_pred c-ccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHc-CCeEEEEccc
Confidence 2 233 788988 8988765 4 88999998 58999998 88999999999 9999999999
Q ss_pred ccc-ccCCCC--ccccc--ccCCCCCceEEEeccCcccccccceee-EEEcCHHH---------HHHHHHHh-hhccCCC
Q 012124 271 EHI-IYAPAT--HTSFA--SLPGMWERTLTVNGFSKAFAMTGWRLG-YIAGPKHF---------VAACNKIQ-SQFTSGA 334 (470)
Q Consensus 271 ~~~-~~~~~~--~~~~~--~~~~~~~~~i~i~S~sK~~~~~G~r~G-~~~~~~~~---------~~~l~~~~-~~~~~~~ 334 (470)
+.. .|.+.. ..++. .+..+..+++++.|+||.+ +|++.| +++.+++. ...+.... ...+.++
T Consensus 320 ~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L--~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp 397 (730)
T 1c4k_A 320 VGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ--AGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSP 397 (730)
T ss_dssp CCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHS--SCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSC
T ss_pred ccccccCcccCCcCcccccccCCCCCCEEEEECCCCCC--CCCCCEEEEEecchhhcCcccccCHHHHHHHHHHhCCCCC
Confidence 753 343211 11121 1121234779999999986 455554 55332221 12233222 2223345
Q ss_pred ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCCeecCCCc--------------------------
Q 012124 335 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQG-------------------------- 387 (470)
Q Consensus 335 ~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~-------------------------- 387 (470)
+.....++..++..- ..+...+..+++.++.+.+.+.|++ ++|+++..|..
T Consensus 398 ~~~~iaal~aA~~~l--~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (730)
T 1c4k_A 398 FYPMYAALDVNAAMQ--EGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKG 475 (730)
T ss_dssp CHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTT
T ss_pred cHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCcc
Confidence 555444444444320 0212344556667777778888877 67877654421
Q ss_pred -----------e-EE-----EeeeccCc--cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--C
Q 012124 388 -----------A-FY-----LFIDFSTY--YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--S 446 (470)
Q Consensus 388 -----------g-~~-----~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~ 446 (470)
+ ++ +.+..|+. ..... .....+..++.+.|.++ ||.+.+. ....+|++++. +
T Consensus 476 ~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~--~~~g~~~~~l~~~L~e~-GI~v~~~----~~~~ir~~~s~g~t 548 (730)
T 1c4k_A 476 AKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDY--EDFGVPATIVANYLRDH-GIIPEKS----DLNSILFLMTPAET 548 (730)
T ss_dssp CTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEE--CSSCCCHHHHHHHHHHT-TCCCSEE----CSSEEEEECCTTCC
T ss_pred chhccccccCCcccccCCeEEEEEeCCcccccccc--cccCCCHHHHHHHHHHC-CcEEEEC----CCCeEEEEeCCCCC
Confidence 1 11 34444420 00000 00112678888888776 8877542 24689999886 8
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q 012124 447 LTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 447 ~~~i~~~l~~l~~~l~~~~ 465 (470)
+++++.+++.|.++.+.+.
T Consensus 549 ~e~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 549 PAKMNNLITQLLQLQRLIE 567 (730)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 8999999999999887654
No 225
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.87 E-value=5.4e-21 Score=202.72 Aligned_cols=307 Identities=13% Similarity=0.088 Sum_probs=195.7
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCC
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 212 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~ 212 (470)
..++++.+++++ |. .+.+++++|+++++..++.++++|||.|+++.|+|.++...+...|++++.++.+.+ +
T Consensus 207 v~~~ee~la~l~----G~---d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~-~ 278 (755)
T 2vyc_A 207 FGESEKYAARVF----GA---DRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRN-R 278 (755)
T ss_dssp HHHHHHHHHHHH----TC---SEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBC-T
T ss_pred HHHHHHHHHHHh----CC---CceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCC-c
Confidence 345566666554 43 246889999999999999999999999999999999999889999999999998643 2
Q ss_pred Cc----c-----CHHhHhhhccC--Cce--------EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEecccccc
Q 012124 213 FL----L-----DPKVLESKLTE--KSR--------LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 273 (470)
Q Consensus 213 ~~----~-----d~~~l~~~l~~--~~~--------~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~ 273 (470)
++ + |++.|++++++ +++ ++++++| ||||.+.+ +++|+++|++| +++||+|++|+..
T Consensus 279 ~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~-~~~livDeA~~~~ 353 (755)
T 2vyc_A 279 YGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKT-SDRLHFDEAWYGY 353 (755)
T ss_dssp TSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTT-CSEEEEECTTCTT
T ss_pred cccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHc-CCEEEEECcCchh
Confidence 33 4 99999999853 344 8888988 79999998 88999999999 9999999999753
Q ss_pred -ccCCC--Ccccccc--cCCCCCceEEEeccCcccccccce-eeEEEcCHH---H-HHHHHHH-hhhccCCCChHHHHHH
Q 012124 274 -IYAPA--THTSFAS--LPGMWERTLTVNGFSKAFAMTGWR-LGYIAGPKH---F-VAACNKI-QSQFTSGASSISQKAG 342 (470)
Q Consensus 274 -~~~~~--~~~~~~~--~~~~~~~~i~i~S~sK~~~~~G~r-~G~~~~~~~---~-~~~l~~~-~~~~~~~~~~~~q~a~ 342 (470)
.+++. +..++.. .+-...++|++.|+||.+ +|.+ .|+++.+.+ + ...+... ....+.+++.+...++
T Consensus 354 ~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L--~g~~~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaal 431 (755)
T 2vyc_A 354 ARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASN 431 (755)
T ss_dssp GGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSS--SCCTTCEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHHH
T ss_pred cccCcccCCcchhcCCcCCccCCCeEEEECccccc--cCcCCeeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 23321 1122211 121246788999999986 4555 566666443 1 1233332 2223344565555554
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC---------CeecCCC---------------------------
Q 012124 343 VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG---------VKMSEPQ--------------------------- 386 (470)
Q Consensus 343 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g---------~~~~~~~--------------------------- 386 (470)
..+++.-. ....++..+++.++.+.+.+.|++++| +++..|.
T Consensus 432 ~aA~~~l~--~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (755)
T 2vyc_A 432 DVAVSMMD--GNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDC 509 (755)
T ss_dssp HHHHHHHS--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGG
T ss_pred HHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhccchhhh
Confidence 44444210 111233444444555555555554433 3332221
Q ss_pred ----------------ce------EEEeeeccCccCCcccC--CCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEE
Q 012124 387 ----------------GA------FYLFIDFSTYYGSEAEG--FGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 442 (470)
Q Consensus 387 ----------------~g------~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls 442 (470)
.+ .-+.+.++.. + ..+ .....+...+.+.|.+ +||.+.. ...+.+|++
T Consensus 510 ~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~-~--~~G~~~~~g~~~~~l~~~L~~-~gI~~e~----~~~~~v~~~ 581 (755)
T 2vyc_A 510 WVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGM-G--EDGELEETGVPAALVTAWLGR-HGIVPTR----TTDFQIMFL 581 (755)
T ss_dssp TBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCB-C--TTSSBCSSCCCHHHHHHHHHT-TTCCCSE----ECSSEEEEE
T ss_pred hccCcccccccccccCCCccccCCeEEEEEcCCC-C--CCCCccccCCcHHHHHHHHHH-CCCEEee----cCCCeEEEE
Confidence 11 1223344321 0 000 0001255778877754 7886643 235789999
Q ss_pred eec--CHHHHHHHHHHHHHHHHhh
Q 012124 443 YAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 443 ~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
++. ++++++.+++.|.++.+.+
T Consensus 582 ~~~g~t~~~~~~l~~al~~~~~~~ 605 (755)
T 2vyc_A 582 FSMGVTRGKWGTLVNTLCSFKRHY 605 (755)
T ss_dssp CCTTCCTTTTHHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHhh
Confidence 987 8888999888888886654
No 226
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.85 E-value=6.3e-20 Score=182.48 Aligned_cols=343 Identities=15% Similarity=0.125 Sum_probs=213.4
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..|.. .+.. +|.+.+++.+++........+..-..+|.+.|++.+ + ..+.+.+++++++|.+
T Consensus 85 dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~~~~~~~~~~~lae~l~~~~----p---~~~~v~f~~SGsEA~e 157 (454)
T 4ao9_A 85 DGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGINLTGHNLLEGRLARLICERF----P---QIEQLRFTNSGTEANL 157 (454)
T ss_dssp TCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSCCCSEESSHHHHHHHHHHHS----T---TCSEEEEESSHHHHHH
T ss_pred CCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCCccCCcHHHHHHHHHHHHhC----C---CCCEEEEeCchHHHHH
Confidence 6788999987753 3333 799999999999875443333334445555555543 2 4579999999999999
Q ss_pred HHHHHhcC--CCCeEEEcCCCCCChHHHHHH------cCCEEEEecCcCCCCCccCHHhHhhhccC---CceEEEEcCCC
Q 012124 169 QAVLAVCS--PGDEVIIPAPFWVSYPEMARI------ADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPS 237 (470)
Q Consensus 169 ~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~------~g~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~i~l~~p~ 237 (470)
.+++.... ..++|+..+-+|++....+-. .......+|. -|++.+++.+++ ++.+|++...+
T Consensus 158 ~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~-------nd~~~l~~~l~~~~~~iAavIvEPv~ 230 (454)
T 4ao9_A 158 MALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY-------NDAQTARAQIERHGPEIAVVLVEPMQ 230 (454)
T ss_dssp HHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT-------TCHHHHHHHHHHTGGGEEEEEECSEE
T ss_pred HHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCC-------chHHHHHHHHhhcCCceEEEEecccc
Confidence 99887532 346888888899875432111 1223344443 278888888843 45666664445
Q ss_pred CCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC
Q 012124 238 NPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 316 (470)
Q Consensus 238 nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~ 316 (470)
...|. ..+++.+++|.++|++| |+++|.||++.. ..+.........+.++ +-+++|.+| .|+.+|.+++.
T Consensus 231 g~~G~~~p~~~fL~~lr~lc~~~-g~lLI~DEV~tG-R~G~~~a~e~~gv~PD------i~t~gK~lg-gG~Piga~~~~ 301 (454)
T 4ao9_A 231 GASGCIPGQPDFLQALRESATQV-GALLVFDEVMTS-RLAPHGLANKLGIRSD------LTTLGKYIG-GGMSFGAFGGR 301 (454)
T ss_dssp STTTCEECCHHHHHHHHHHHHHH-TCEEEEECTTGG-GGSTTCHHHHHTCCCS------EEEEEGGGG-TTSSCEEEEEC
T ss_pred CCCCccCCchhhHHHHHHHHhhc-CCEEEEECCCcC-CCccccchhccCCCCc------EEEeccccC-CCCcceeeeeH
Confidence 55665 56788999999999999 999999999974 3322111111223332 446889998 89999999999
Q ss_pred HHHHHHHHHH----hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEe
Q 012124 317 KHFVAACNKI----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 392 (470)
Q Consensus 317 ~~~~~~l~~~----~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~ 392 (470)
+++++.+... ....+++.+++...++.+.|+.-.. ++.++++.+.-+..++.|.+.+.+. ++......-|..+.
T Consensus 302 ~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~-~~~~~~~~~~g~~l~~~L~~l~~~~-~~~~~vrg~G~m~g 379 (454)
T 4ao9_A 302 ADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT-PEAAGALAERGEALRARLNALCANE-GVAMQFTGIGSLMN 379 (454)
T ss_dssp HHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHHHHHHH-TBSCEEEEETTEEE
T ss_pred HHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHhhC-CCCEEEeeeceEEE
Confidence 9999876432 1234677899999999888875322 3434333333333333333333333 22111112233344
Q ss_pred eeccCccCCcccCCCCC--CCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhCC
Q 012124 393 IDFSTYYGSEAEGFGKI--ENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 393 ~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~~ 466 (470)
+.+.+............ .....++..|+++ ||.+.|. +.+.++...++++|++++++|++++.++..
T Consensus 380 i~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~-Gv~~~p~------~~~~~s~~~T~~dId~~l~al~~~l~~~~a 448 (454)
T 4ao9_A 380 AHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNE-DIYSSPR------GFVVLSLPLTDADIDRYVAAIGSFIGGHGA 448 (454)
T ss_dssp EESCCSCCCSGGGGTTCCHHHHHHHHHHHHHT-TEECCTT------CEEECCTTCCHHHHHHHHHHHHHHHHHSGG
T ss_pred EEEecCCCCCHHHHHhhhHHHHHHHHHHHHHC-CEEEcCC------CCEEEeCCCCHHHHHHHHHHHHHHHHhccc
Confidence 44422100000000000 0123466677776 9998774 345566667999999999999999988764
No 227
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.84 E-value=5.7e-20 Score=178.95 Aligned_cols=322 Identities=11% Similarity=0.052 Sum_probs=213.6
Q ss_pred CCChHHHHHHHHHHHHcC----CCC---CCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEE-ecChHHHHHHHHHHhcCC
Q 012124 106 FDTPVLIAEAGINAIREG----FTR---YTPNAGTLELRSAICHKLKEENGLSYTPDQILV-SNGAKQSILQAVLAVCSP 177 (470)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~----~~~---y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~i-t~g~~~al~~~~~~l~~~ 177 (470)
.+.|+.+.+++.+.+.+. ... +.......++.+...+.+++.+|.+ ++++|++ |+|+++++++++..++.+
T Consensus 22 ~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~-~~~evif~t~~~T~a~n~a~~~l~~~ 100 (377)
T 3e77_A 22 SMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVP-DNYKVIFLQGGGCGQFSAVPLNLIGL 100 (377)
T ss_dssp CCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCCeEEEEcCchHHHHHHHHHhccCC
Confidence 345899999998876531 111 1011112334444444455555642 3357888 589999999999999865
Q ss_pred --CCeEEEcCCCCCCh--HHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHH
Q 012124 178 --GDEVIIPAPFWVSY--PEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 253 (470)
Q Consensus 178 --gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~ 253 (470)
||+|++..-++.+. ...++..|..++.++.+. ++..+++.++..+++++++|.+++..|.||+..|.
T Consensus 101 ~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~--~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pi------- 171 (377)
T 3e77_A 101 KAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLG--SYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDF------- 171 (377)
T ss_dssp STTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCS--SSCSCCCGGGCCCCTTCSCEEEESEETTTTEECSS-------
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCC--CcCCCCChHHhccCCCccEEEEeCccCchheEchh-------
Confidence 99988766655443 234566788877777753 34477888888888899999888888899999994
Q ss_pred HHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHH----------
Q 012124 254 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC---------- 323 (470)
Q Consensus 254 ~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l---------- 323 (470)
+|+++ ++++++|.+.+. +..+..+..+ + +++.|..|.+|.+| +|+++..+++++.+
T Consensus 172 -i~~~~-~~~~~vD~~q~~----g~~~id~~~~----~--~~~~s~~K~~gp~G--~g~l~~~~~~l~~~~~~~p~~~~~ 237 (377)
T 3e77_A 172 -IPDVK-GAVLVCDMSSNF----LSKPVDVSKF----G--VIFAGAQKNVGSAG--VTVVIVRDDLLGFALRECPSVLEY 237 (377)
T ss_dssp -CCCCT-TCCEEEECTTTT----TSSCCCGGGC----S--EEEEEGGGTTSCTT--CEEEEEETTSCSCCCTTSCGGGCH
T ss_pred -hhccC-CCEEEEEccccc----CCCCCchhhc----C--EEEEecccccCCCc--cEEEEEcHHHHhhccCCCCchhhH
Confidence 36788 999999999875 2223333332 2 46788899998677 68887765543211
Q ss_pred HHH-h-hhccCCCChHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCCeecC----CCceEEEeeecc
Q 012124 324 NKI-Q-SQFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSE----PQGAFYLFIDFS 396 (470)
Q Consensus 324 ~~~-~-~~~~~~~~~~~q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~----~~~g~~~~~~~~ 396 (470)
... . ......++.....++.++|+.- .+. .++.+.++.++..+++++.|++++|+.+.. ..++..+.+.+|
T Consensus 238 ~~~~~~~~~~~Tp~v~~i~~l~~al~~l--~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~ 315 (377)
T 3e77_A 238 KVQAGNSSLYNTPPCFSIYVMGLVLEWI--KNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIG 315 (377)
T ss_dssp HHHHTTTTCSSCCCHHHHHHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEES
T ss_pred HHHhhcCCCCCCchHHHHHHHHHHHHHH--HHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcC
Confidence 111 1 1122345566666666666631 123 578899999999999999999998887432 123444666776
Q ss_pred CccCCcccCCCCCCC-HHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 397 TYYGSEAEGFGKIEN-SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 397 ~~~~~~~~~~~~~~~-~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
+.-. ..+ ...+...|.+ +||.+.+|.. ..+.+|+|+.. ++++++.+++.|++++++.
T Consensus 316 ~~~~--------~~~~~~~~l~~l~~-~Gi~~~~g~~--~~g~iRiS~~~~~t~edId~l~~al~~~~~~~ 375 (377)
T 3e77_A 316 NAKG--------DDALEKRFLDKALE-LNMLSLKGHR--SVGGIRASLYNAVTIEDVQKLAAFMKKFLEMH 375 (377)
T ss_dssp STTC--------CHHHHHHHHHHHHH-TTEESCBCCT--TTCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCC--------chhHHHHHHHHHHH-CCcEEeCCCC--cCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 4200 001 1356666654 5999988753 35689999987 8999999999999998763
No 228
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.81 E-value=1.1e-18 Score=169.26 Aligned_cols=326 Identities=14% Similarity=0.131 Sum_probs=211.2
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcC----CCCC--CC-CcCcHHHHHHHHHHHHHHcCCCCCCCcEEE-ecChHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREG----FTRY--TP-NAGTLELRSAICHKLKEENGLSYTPDQILV-SNGAKQS 166 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~----~~~y--~~-~~g~~~lr~~ia~~l~~~~g~~~~~~~i~i-t~g~~~a 166 (470)
.++.|+.|.- +.|+.+++++.+.+.+. ...| .. .....++.+...+.+++.+|.+ ++++|++ |+|++++
T Consensus 5 ~~~~f~pgpt--~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~-~~~~v~f~t~~~T~a 81 (361)
T 3m5u_A 5 RKINFSAGPS--TLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELN-DDYEVLFLQGGASLQ 81 (361)
T ss_dssp CCEECCSSSC--CCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHH
T ss_pred ceEeecCCCC--CCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCC-CCceEEEEcCcHHHH
Confidence 4456665532 45888999988876421 1101 01 1111233334444444445642 3457887 9999999
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCC--hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCC
Q 012124 167 ILQAVLAVCSPGDEVIIPAPFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 244 (470)
Q Consensus 167 l~~~~~~l~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~ 244 (470)
+++++..++ +||++.+-.-+..+ +...++..|+++..++.+.++.+.++++. + +++++++|.+++..|.||...
T Consensus 82 ~n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~-~--l~~~t~lv~~~~~e~~tG~~~ 157 (361)
T 3m5u_A 82 FAMIPMNLA-LNGVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNFDHIPRV-E--FSDNADYAYICSNNTIYGTQY 157 (361)
T ss_dssp HHHHHHHHC-CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTSCSCCCC-C--CCTTSSEEEEESEETTTTEEC
T ss_pred HHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCCCcCChh-h--cCCCCCEEEEeCCCCCcceeC
Confidence 999999998 88865322222222 23445678999999998754433246666 3 888999999888888899987
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHH
Q 012124 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 324 (470)
Q Consensus 245 s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~ 324 (470)
+. | + ++ ++++++|.+.+.. ..+..+.. -.+++.|..|.+|.+| +|+++..+++.+.+.
T Consensus 158 ~~-----i---~-~~-~~~~~vD~~q~~g----~~~id~~~------~d~~~~s~~K~~gp~G--~g~l~~~~~~~~~~~ 215 (361)
T 3m5u_A 158 QN-----Y---P-KT-KTPLIVDASSDFF----SRKVDFSN------IALFYGGVQKNAGISG--LSCIFIRKDMLERSK 215 (361)
T ss_dssp SS-----C---C-CC-SSCEEEECGGGTT----SSCCCCTT------EEEEEEETTTTSSCTT--CEEEEEEHHHHHHHH
T ss_pred Cc-----c---c-cc-CCEEEEEcccccC----CCCCCccc------CCEEEEechhccCCCc--cEEEEEcHHHHhhhc
Confidence 72 2 2 36 8999999998752 22222222 2377889999998666 799999988877654
Q ss_pred H-----------H-hh-hccCCCChHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCC-eecC-C--C
Q 012124 325 K-----------I-QS-QFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGV-KMSE-P--Q 386 (470)
Q Consensus 325 ~-----------~-~~-~~~~~~~~~~q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~-~--~ 386 (470)
. . .. .....++.....++.++++.-. +. .++.+.++.++..+++++.|++++|+ .... + .
T Consensus 216 ~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~--~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~r 293 (361)
T 3m5u_A 216 NKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLL--NQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDR 293 (361)
T ss_dssp TCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGB
T ss_pred CCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHH--HccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHc
Confidence 2 1 11 1123456666666666665310 22 37888889999999999999998766 4432 1 2
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
+...+.+.+|+..+ -..++...|. ++||.+.+|.. ..+.+|+|+.. ++++++.+++.|+++.++.
T Consensus 294 s~~ivsf~~~~~~~----------~~~~~~~~L~-~~gI~~~~g~~--~~g~iRiS~~~~~t~edId~l~~al~~~~~~~ 360 (361)
T 3m5u_A 294 SLMNVSFNIAKNKD----------LEPLFVKEAE-EAGMIGLKGHR--ILGGIRASIYNALNLDQVKTLCEFMKEFQGKY 360 (361)
T ss_dssp CSSEEEEEESSCTT----------HHHHHHHHHH-HTTEECCBCCT--TTCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCchh----------hhHHHHHHHH-HCCCEEecCCC--ccCeEEEEccCCCCHHHHHHHHHHHHHHHHhc
Confidence 23345667764100 1246776664 55999988753 23679999987 8999999999999988763
No 229
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.80 E-value=1.4e-17 Score=166.99 Aligned_cols=402 Identities=11% Similarity=0.056 Sum_probs=233.7
Q ss_pred cCcccCCCCCCCCCCC---CccccCCccccccccccccchhhhhhcCCCcccccccCccccccccCCchHHHHHHHHHHH
Q 012124 13 SNPVNFGHSKIPAQIP---GSVSFPSRYLHNFNLNNDRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATAL 89 (470)
Q Consensus 13 ~~~~~~~g~~lPs~R~---La~~l~vs~~TAy~~L~~~G~i~s~~g~sG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (470)
++|....|+++..... .++.+..-.-|-...+.++|=|.-..| .|.||..
T Consensus 11 ss~~~p~~~~~~~~~~~~~~~~~~~~h~~t~~~~~~~~~P~vi~rg-~G~~l~D-------------------------- 63 (473)
T 4e3q_A 11 SSGLVPRGSHMNKPQSWEARAETYSLYGFTDMPSLHQRGTVVVTHG-EGPYIVD-------------------------- 63 (473)
T ss_dssp -----------CCCCSHHHHHHHHBCCSSCCHHHHHHHCCEEEEEE-ETTEEEE--------------------------
T ss_pred ccCccCCCCCCCCcccHHHHHhhhcCCCCCChhhhccCCCEEEEee-ecCEEEe--------------------------
Confidence 5666667777764433 333344433343344555665554558 8988843
Q ss_pred HhcCCCeEEccCCCCCC--CC-hHHHHHHHHHHHHcCCCCCCCCcC-cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 90 AQAGVSVIRLAAGEPDF--DT-PVLIAEAGINAIREGFTRYTPNAG-TLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 90 ~~~~~~~i~l~~g~~~~--~~-~~~~~~a~~~~~~~~~~~y~~~~g-~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
.+|+.+||+..|.... .. ++.+.+++.+++.+.. .|....+ ..+....+++.|.+..+ .+-+.+++++++++
T Consensus 64 -~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~-~~~~~~~~~~~~~~~lAe~L~~~~p--~~~~~v~f~~sGsE 139 (473)
T 4e3q_A 64 -VNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFP-GYHAFFGRMSDQTVMLSEKLVEVSP--FDSGRVFYTNSGSE 139 (473)
T ss_dssp -TTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCC-CCCCCTTEEEHHHHHHHHHHHHHSS--CSSCEEEEESSHHH
T ss_pred -CCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcc-cccccccccCHHHHHHHHHHHhhCC--CCccEEEEeCchHH
Confidence 2678899999886443 33 7899999999987632 2222222 23555567777766544 24468999999999
Q ss_pred HHHHHHHHhc-------CCC-CeEEEcCCCCCChHHHHHH-cCC-----------EEEEecCcCC---CCCccC------
Q 012124 166 SILQAVLAVC-------SPG-DEVIIPAPFWVSYPEMARI-ADA-----------TPVILPTRIS---ENFLLD------ 216 (470)
Q Consensus 166 al~~~~~~l~-------~~g-d~Vlv~~p~y~~~~~~~~~-~g~-----------~~~~v~~~~~---~~~~~d------ 216 (470)
|.+.+++... .++ .+|+...-+|++....... .|- ..+.++.... +...-.
T Consensus 140 A~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 219 (473)
T 4e3q_A 140 ANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVA 219 (473)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHH
Confidence 9999998642 233 5788888999986543322 221 1222222100 000001
Q ss_pred --HHhHhhhcc----CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcc-cccccCC
Q 012124 217 --PKVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLPG 288 (470)
Q Consensus 217 --~~~l~~~l~----~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~-~~~~~~~ 288 (470)
.+++++.+. +++.+|++...+.-.|. ..+++.+++|.++|++| |+++|.||+...|...+.... ....+.+
T Consensus 220 ~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~-gilLI~DEV~tGfGRtG~~fa~e~~gv~P 298 (473)
T 4e3q_A 220 RLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKY-DIPVISDEVICGFGRTGNTWGCVTYDFTP 298 (473)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT-TCCEEEECTTTSSSTTSSSCHHHHTTCCC
T ss_pred HHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhccc-ceEEeccCccccCCcccchhHHHhcCCCC
Confidence 233444442 24556666555665675 56788999999999999 999999999998743332111 1112222
Q ss_pred CCCceEEEeccCccccccc-ceeeEEEcCHHHHHHHHHHh-------hhccCCCChHHHHHHHHHHhcCCCChHHHHHHH
Q 012124 289 MWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQ-------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 360 (470)
Q Consensus 289 ~~~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~-------~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~ 360 (470)
+ +-+++|.++ .| +++|.+++.+++.+.+.... ...+++.++++..++.+.|+.-.. +..+++
T Consensus 299 D------i~t~~K~l~-gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~-~~l~~~-- 368 (473)
T 4e3q_A 299 D------AIISSKNLT-AGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMN-EGLAEN-- 368 (473)
T ss_dssp S------EEEECGGGG-TTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHH-SSHHHH--
T ss_pred C------hHHhccccc-CCCCCcccccccHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhcc-ccHHHH--
Confidence 2 445889998 77 99999999999998886532 235677899998888888763110 122233
Q ss_pred HHHHHHHHHHHHHhcc---CCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCC
Q 012124 361 KAFRERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT 437 (470)
Q Consensus 361 ~~~~~~~~~l~~~L~~---~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~ 437 (470)
.++.-+++.+.|++ .+.+.-.. .-|+++-+++.........-.........+.+.++++ ||++.|. .+
T Consensus 369 --~~~~g~~l~~~L~~l~~~~~v~~vR-G~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~~-----g~ 439 (473)
T 4e3q_A 369 --VRRLAPRFEERLKHIAERPNIGEYR-GIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDL-GLICRPL-----GQ 439 (473)
T ss_dssp --HHHHHHHHHHHHHHHTTSTTEEEEE-EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECEEE-----TT
T ss_pred --HHHHHHHHHHHHHHHhcCCCeeEEe-ecceEEEEEEecCccccccccccHHHHHHHHHHHHHC-CcEEEec-----CC
Confidence 33333344444433 34442221 2345555665322100000000001245677777765 9998874 25
Q ss_pred cEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 438 CIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 438 ~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
.+|++... +++++++++++|+++++++.
T Consensus 440 ~i~l~PPL~it~~eid~~~~~l~~al~~v~ 469 (473)
T 4e3q_A 440 SVVLCPPFILTEAQMDEMFDKLEKALDKVF 469 (473)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 78887653 99999999999999998753
No 230
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.80 E-value=3.3e-18 Score=178.37 Aligned_cols=305 Identities=12% Similarity=0.156 Sum_probs=187.6
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCC
Q 012124 132 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE 211 (470)
Q Consensus 132 g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~ 211 (470)
-..++++.+|+++ | ....+++++|++.++..++.++++|||.|+++.++|.++.+.+...|++++.++...+
T Consensus 196 ~i~eaE~~lA~~f----G---a~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~- 267 (715)
T 3n75_A 196 PHKEAEQYIARVF----N---ADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRN- 267 (715)
T ss_dssp HHHHHHHHHHHHH----T---CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCBC-
T ss_pred HHHHHHHHHHHHh----C---CCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecccc-
Confidence 3457777777775 4 2346778889899999999999999999999999999999999999999999997643
Q ss_pred CCcc---------CHHhHhhhccC--Cce---EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccc-cC
Q 012124 212 NFLL---------DPKVLESKLTE--KSR---LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YA 276 (470)
Q Consensus 212 ~~~~---------d~~~l~~~l~~--~~~---~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~-~~ 276 (470)
.+++ |++.|++++++ +++ ++++++| ||+|.+++ +++|+++|+++ + ||+||+|+... |.
T Consensus 268 ~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~d---l~~I~ela~~~-~--livDEAH~~~~~f~ 340 (715)
T 3n75_A 268 AYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYN---TDFIKKTLDVK-S--IHFDSAWVPYTNFS 340 (715)
T ss_dssp TTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEEC---HHHHHHHCCCS-E--EEEECTTCTTGGGS
T ss_pred ccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCC---HHHHHHHhCcC-c--EEEccccccccccC
Confidence 4543 89999999963 334 7889999 99999999 77778888766 4 78999998643 33
Q ss_pred CCCcccccccCC--CCCc-eEEEeccCcccccccc-eeeEEEcCHHH-HHHHHHHhhh-ccCCCChHHHHHHHHHHhcCC
Q 012124 277 PATHTSFASLPG--MWER-TLTVNGFSKAFAMTGW-RLGYIAGPKHF-VAACNKIQSQ-FTSGASSISQKAGVAALGLGY 350 (470)
Q Consensus 277 ~~~~~~~~~~~~--~~~~-~i~i~S~sK~~~~~G~-r~G~~~~~~~~-~~~l~~~~~~-~~~~~~~~~q~a~~~~l~~~~ 350 (470)
+. .+....+.. ..+. ++++.|++|+++ |+ ..|++.++.++ ...+...... .+.+++.+...++..+++.-
T Consensus 341 ~~-~~~~~al~~g~~aD~vii~~~S~hKtL~--gltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~- 416 (715)
T 3n75_A 341 PI-YEGKCGMSGGRVEGKVIYETQSTHKLLA--AFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMM- 416 (715)
T ss_dssp GG-GTTSSTTSSSCCTTCEEEEEECHHHHSS--CCTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHH-
T ss_pred Cc-cccccccccCcCCCEEEEEEeccccccc--CCCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH-
Confidence 21 111122211 0234 366999999974 43 35888776542 2334433333 34456666555555554320
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhccCC----C--CeecCCC-----------------------ce-EE-----Eeeec
Q 012124 351 AGGEVVSKMVKAFRERRDFLVKSFGELE----G--VKMSEPQ-----------------------GA-FY-----LFIDF 395 (470)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~----g--~~~~~~~-----------------------~g-~~-----~~~~~ 395 (470)
....-++.++++.++.+.+++.|++++ | +.+..+. .+ ++ +.+..
T Consensus 417 -~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~ 495 (715)
T 3n75_A 417 -KGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLT 495 (715)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEEEC
T ss_pred -HhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeEEEEEc
Confidence 011233345555555556666655442 2 2222221 01 11 22233
Q ss_pred cCccCCcccC--CCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 396 STYYGSEAEG--FGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 396 ~~~~~~~~~~--~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
++. + ..+ .+...+...+.+.|. ++||.+--. ...++-+-++. ++++++..++.|.++-+.+
T Consensus 496 ~~~-~--~~G~~~~~Gi~g~~~~~~L~-~~~I~~E~~----d~~~vl~l~s~g~~~~~~~~L~~aL~~~~~~~ 560 (715)
T 3n75_A 496 PGM-E--KDGTMSDFGIPASIVAKYLD-EHGIVVEKT----GPYNLLFLFSIGIDKTKALSLLRALTDFKRAF 560 (715)
T ss_dssp SCB-C--TTSCBCSSCCCHHHHHHHHH-HTTCCCSEE----ETTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCC-C--CCCccccCCCcHHHHHHHHH-HCCCEEEec----CCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 321 0 000 000125567777764 558865332 23455555553 7788888887777665433
No 231
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.79 E-value=1.4e-18 Score=170.13 Aligned_cols=312 Identities=9% Similarity=0.056 Sum_probs=203.8
Q ss_pred CChHHHHHHHHHHHHcC----CC-----CCC--CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEE-ecChHHHHHHHHHHh
Q 012124 107 DTPVLIAEAGINAIREG----FT-----RYT--PNAGTLELRSAICHKLKEENGLSYTPDQILV-SNGAKQSILQAVLAV 174 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~~----~~-----~y~--~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~i-t~g~~~al~~~~~~l 174 (470)
+.|+.+++++.+.+.+. .. ..+ -..-+.+.|+.+++++ |.+ ++++|++ |+|+++++++++..+
T Consensus 37 ~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll----~~~-~~~evif~t~~~T~a~n~ai~~l 111 (386)
T 3qm2_A 37 MLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLL----NIP-SNYKVLFCHGGGRGQFAGVPLNL 111 (386)
T ss_dssp CCCHHHHHHHTCC-----------------------CCHHHHHHHHHHH----TCC-TTEEEEEEESCTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHh----CCC-CCceEEEEcCCchHHHHHHHHhc
Confidence 35788888887655321 10 111 1234567788888876 431 2357888 699999999999999
Q ss_pred cCCCCeEEEcCCCCCCh--HHHHHHcCCEEEEecCc-CCCCCccCHHhHhhhccCCceEEEEcCCCCCcccC-CCHHHHH
Q 012124 175 CSPGDEVIIPAPFWVSY--PEMARIADATPVILPTR-ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV-YPKNLLD 250 (470)
Q Consensus 175 ~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~-~s~~~~~ 250 (470)
+++||+|++..-++.+. ...++..| ++..++.+ .+.+..++++.++.++++++++|.+++..|.||+. .+ ++
T Consensus 112 ~~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG~~i~p---i~ 187 (386)
T 3qm2_A 112 LGDKTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDGIAIDE---TP 187 (386)
T ss_dssp CTTCCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTTTEECCC---CC
T ss_pred cCCCCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCcCEecCc---hh
Confidence 99999987544433332 23456678 88888886 12333368888999999999999888888889996 67 44
Q ss_pred HHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHH-------
Q 012124 251 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC------- 323 (470)
Q Consensus 251 ~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l------- 323 (470)
+|. + |+++++|.+.+. +..+..+..+ + +.+.|..|.+|.+| +|+++..+++++.+
T Consensus 188 ~i~-----~-g~~~~vDa~qs~----g~~pidv~~~----~--~~~~s~hK~lGP~G--~g~l~v~~~~~~~~~~~~p~~ 249 (386)
T 3qm2_A 188 DFG-----P-EVVVTADFSSTI----LSAPLDVSRY----G--VIYAGAQKNIGPAG--LTLVIVREDLLGKAHESCPSI 249 (386)
T ss_dssp CCC-----T-TCCEEEECTTTT----TSSCCCGGGC----S--EEEEETTTTTCCTT--EEEEEEEGGGCSCCCTTSCGG
T ss_pred hhc-----C-CCEEEEEccccc----CCCCCCcccc----C--EEEEecccccCCCc--cEEEEECHHHHhhhcccCCcH
Confidence 443 7 899999999875 2233344333 2 45688899998666 78888776653211
Q ss_pred ---HHH-hh-hccCCCChHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHHHHHHhccCCCC-eec-CC--CceEEEe
Q 012124 324 ---NKI-QS-QFTSGASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGELEGV-KMS-EP--QGAFYLF 392 (470)
Q Consensus 324 ---~~~-~~-~~~~~~~~~~q~a~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~-~~--~~g~~~~ 392 (470)
... .. .....++.....++.++++. ..+ .++.+.++.++.++++++.|+++ |+ ... .+ .+...+.
T Consensus 250 ~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~---~~~~gG~~~i~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~rs~~iv~ 325 (386)
T 3qm2_A 250 LDYTVLNDNDSMFNTPPTFAWYLSGLVFKW---LKAQGGVAAMHKINQQKAELLYGVIDNS-DFYRNDVAQANRSRMNVP 325 (386)
T ss_dssp GCHHHHHHC-------CCSHHHHHHHHHHH---HHHHTHHHHHHHHHHHHHHHHHHHHHTC-SSEECCBCGGGBCSSEEE
T ss_pred HHHHHHhhcCCCCCCCcHHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCHHHcCceEEE
Confidence 111 11 11123455556666666653 123 47888899999999999999887 54 221 11 2334456
Q ss_pred eeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012124 393 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~ 463 (470)
+.+|+.- -...+...|. ++||.+.+|... .+.+|+|+.. ++++++.+++.|+++.++
T Consensus 326 f~~~~~~-----------~~~~~~~~L~-~~gI~~~~g~~~--~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 326 FQLADNT-----------LDKVFLEESF-AAGLHALKGHRV--VGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp EEESSGG-----------GHHHHHHHHH-HTTEECCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EECCCcc-----------ccHHHHHHHH-HCCCEEeCCCCC--cCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 6776420 1256777665 459999887533 3569999987 899999999999998875
No 232
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.78 E-value=2e-17 Score=165.14 Aligned_cols=351 Identities=15% Similarity=0.122 Sum_probs=211.9
Q ss_pred cCCCeEEccCCC--CCCCC-hHHHHHHHHHHHHcCCC---CCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 92 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFT---RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~~-~~~~~~a~~~~~~~~~~---~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
+|+.+||+..|. ..+.. ++.+.+++.+++.+..+ .+.+. +....+++.+.+.... -..+.+++++++++
T Consensus 62 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~----~~~~~lae~L~~~~p~-~~~~~v~f~~sGsE 136 (456)
T 4atq_A 62 DGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTCFMVTPY----EGYVAVTEQLNRLTPG-DHAKRTVLFNSGAE 136 (456)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSCC----HHHHHHHHHHHHHSSC-SSCEEEEEESSHHH
T ss_pred CCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCcccCccCc----HHHHHHHHHHHHhCCC-CCCcEEEEeCChHH
Confidence 678899998884 44444 78999999998876321 12122 3334455555543321 12457899999999
Q ss_pred HHHHHHHHhc--CCCCeEEEcCCCCCChHHHHHH-cC-------------CEEEEecCcC----CCCCccCHHhH-----
Q 012124 166 SILQAVLAVC--SPGDEVIIPAPFWVSYPEMARI-AD-------------ATPVILPTRI----SENFLLDPKVL----- 220 (470)
Q Consensus 166 al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~-~g-------------~~~~~v~~~~----~~~~~~d~~~l----- 220 (470)
|.+.+++... ...+.|+..+-+|++....+.. .+ ..+..+|... .....-+.+.+
T Consensus 137 A~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 216 (456)
T 4atq_A 137 AVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAIT 216 (456)
T ss_dssp HHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHH
Confidence 9999998642 2347888899999987654322 11 1234444321 01001122332
Q ss_pred --hhhcc-CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc-ccccccCCCCCceEE
Q 012124 221 --ESKLT-EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLT 295 (470)
Q Consensus 221 --~~~l~-~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~~~~~~~~~~~~i~ 295 (470)
++.+. +++.+|++...+.-.|. ..+++.+++|.++|++| |+++|.||++..|...+... .....+.++
T Consensus 217 ~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~-gillI~DEV~tG~GRtG~~~a~e~~gv~PD------ 289 (456)
T 4atq_A 217 MIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEK-GIVFIADEVQSGFCRTGEWFAVDHEGVVPD------ 289 (456)
T ss_dssp HHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSGGGGTTCCCS------
T ss_pred HHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhc-CCceEecccccccCCccccccccccCCCCc------
Confidence 22222 25666666555655675 56788999999999999 99999999999864333211 111122222
Q ss_pred EeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012124 296 VNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 375 (470)
Q Consensus 296 i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 375 (470)
+-+++|.+| .|+.+|.+++.+++.+.+.......+++.++++..++.+.|+.-.. ++.+++.++.-...++.|.+...
T Consensus 290 ivt~gK~lg-gg~P~~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~~-~~l~~~~~~~g~~l~~~L~~l~~ 367 (456)
T 4atq_A 290 IITMAKGIA-GGLPLSAITGRADLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQ-HDLNGRARHIEELALGKLRELAA 367 (456)
T ss_dssp EEEECGGGG-TTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccc-CcCCceeeEecHHHHhcccccCCCCCCCCChHHHHhhHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHH
Confidence 446889998 9999999999999988876666667888999999999888863110 12222222211112222222222
Q ss_pred cCCC--CeecC--CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHH
Q 012124 376 ELEG--VKMSE--PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTT 449 (470)
Q Consensus 376 ~~~g--~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~ 449 (470)
+++. -.++. ..-|+++.+++.+....... ......+++.++++ ||.+.++..+ .+.|||.... ++++
T Consensus 368 ~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~----~~~~~~v~~~~~~~-Gvl~~~~g~~--~~~irl~PpL~it~~~ 440 (456)
T 4atq_A 368 ELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPN----AELTKAVAAACLKE-GVIILTCGTY--GNVIRLLPPLVISDEL 440 (456)
T ss_dssp HCC-----CEEEEEEETTEEEEEEBCTTSCCBC----HHHHHHHHHHHHHT-TEECEEECTT--SCEEEECCCTTCCHHH
T ss_pred hcccccCCceEEeeecceEEEEEEecCCCCCcC----HHHHHHHHHHHHHC-CCEEEecCCC--CCEEEEECCCCCCHHH
Confidence 2221 11111 12356566776432100000 00134677777766 9988765332 3679998664 9999
Q ss_pred HHHHHHHHHHHHHh
Q 012124 450 LQAAVERIKKGLLT 463 (470)
Q Consensus 450 i~~~l~~l~~~l~~ 463 (470)
+++++++|+++++.
T Consensus 441 id~~l~~l~~al~a 454 (456)
T 4atq_A 441 LIDGLEVLAAAIKA 454 (456)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999875
No 233
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.69 E-value=4e-16 Score=166.62 Aligned_cols=352 Identities=13% Similarity=0.047 Sum_probs=210.7
Q ss_pred CeEEccCCC--CCCCC--hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHH
Q 012124 95 SVIRLAAGE--PDFDT--PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 170 (470)
Q Consensus 95 ~~i~l~~g~--~~~~~--~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~ 170 (470)
.++|+..|. ..+.. ++.+.+++.+++.+-.+ +.......+....+++.|.+..+.. ..+.+++++++++|.+.+
T Consensus 381 ~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h-~~~~~~~~~~~~~Lae~L~~~~p~~-~l~~vff~~SGSeA~E~A 458 (831)
T 4a0g_A 381 QQFDACASWWTQGPDPTFQAELAREMGYTAARFGH-VMFPENVYEPALKCAELLLDGVGKG-WASRVYFSDNGSTAIEIA 458 (831)
T ss_dssp EEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSS-CCCTTEECHHHHHHHHHHHHTTTTT-TCCEEEEESSHHHHHHHH
T ss_pred heeeecccHhhcCCCCCCCHHHHHHHHHHHhhccc-ccccccCCHHHHHHHHHHHHhCCCC-CCCEEEECCChhHHHHHH
Confidence 467777652 23332 68899999998876221 1111122355556777776544311 136899999999999998
Q ss_pred HHHhc-----CCC------------CeEEEcCCCCCChHHH-HHHcCCE---------------E-------------EE
Q 012124 171 VLAVC-----SPG------------DEVIIPAPFWVSYPEM-ARIADAT---------------P-------------VI 204 (470)
Q Consensus 171 ~~~l~-----~~g------------d~Vlv~~p~y~~~~~~-~~~~g~~---------------~-------------~~ 204 (470)
++... ..| .+|+..+-+|++-... +...|.. + ..
T Consensus 459 lK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 538 (831)
T 4a0g_A 459 LKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWN 538 (831)
T ss_dssp HHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEE
T ss_pred HHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceE
Confidence 88752 122 3688888888875543 3333311 0 01
Q ss_pred ecCcCC------C--CCccC------------------HHhHhhhcc--------CCceEEEEcCC-CCCcccC-CCHHH
Q 012124 205 LPTRIS------E--NFLLD------------------PKVLESKLT--------EKSRLLILCSP-SNPTGSV-YPKNL 248 (470)
Q Consensus 205 v~~~~~------~--~~~~d------------------~~~l~~~l~--------~~~~~i~l~~p-~nPtG~~-~s~~~ 248 (470)
++.... + .+ -+ .+.|++.++ +++.+|++... ++..|.. .+++.
T Consensus 539 ~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~ 617 (831)
T 4a0g_A 539 ISLPESFSEIAPEYGTF-TSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLF 617 (831)
T ss_dssp EECCTTSCCCCSSTTEE-SCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHH
T ss_pred ecCCccccccccccccc-cchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHH
Confidence 111100 0 00 01 256777764 24556666554 7888864 58899
Q ss_pred HHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccc-ceeeEEEcCHHHHHHHHHH-
Q 012124 249 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI- 326 (470)
Q Consensus 249 ~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~~- 326 (470)
+++|.++|++| |+++|.||++..|...+... ....+.- ... +.+|+|.++ .| +++|++++++++++.+...
T Consensus 618 L~~l~~lc~~~-gilLI~DEV~tGfGRtG~~f-a~e~~gv-~PD---iitlsK~L~-gG~~Plgav~~~~~i~~~~~~~~ 690 (831)
T 4a0g_A 618 QRVLVNECRNR-KIPVIFDEVFTGFWRLGVET-TTELLGC-KPD---IACFAKLLT-GGMVPLAVTLATDAVFDSFSGDS 690 (831)
T ss_dssp HHHHHHHHHHT-TCCEEEECTTTTTTTTSBSS-THHHHSS-CCS---EEEECGGGG-TTSSCCEEEEECHHHHHTTCSSC
T ss_pred HHHHHHHHHHc-CCeEEEEcCccccccCCCch-hhHhcCC-CCc---EEEEecccc-cCccCcEEEEECHHHHHHHhccc
Confidence 99999999999 99999999999875544322 1111111 111 347999998 68 7999999999999887542
Q ss_pred -----hhhccCCCChHHHHHHHHHHhcCCC--ChHHHHHHHHHHHH-HHHHHHHHhccCCCCeecCCCceEEEeeeccCc
Q 012124 327 -----QSQFTSGASSISQKAGVAALGLGYA--GGEVVSKMVKAFRE-RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTY 398 (470)
Q Consensus 327 -----~~~~~~~~~~~~q~a~~~~l~~~~~--~~~~~~~~~~~~~~-~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~ 398 (470)
....+++.+++.+.++.+.|+.-.. ..+.+.+..+.+++ .++.+.+.+.+.+.+..... .|+++.+++...
T Consensus 691 ~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg-~Gl~~~iel~~~ 769 (831)
T 4a0g_A 691 KLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVV-IGTLFALELKAD 769 (831)
T ss_dssp GGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEE-ETTEEEEEEC--
T ss_pred ccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEee-cccEEEEEEecC
Confidence 1335678899999988887763100 01111111111111 01234444555555543333 345566676431
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhCC
Q 012124 399 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~~ 466 (470)
... ... .......+.+.|+++ ||.+.|+ .+.+|++... ++++|++++++|+++++++.+
T Consensus 770 ~~~--~~~-~~~~a~~~~~~l~e~-Gv~v~p~-----g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l~~ 830 (831)
T 4a0g_A 770 ASN--SGY-ASLYAKSLLIMLRED-GIFTRPL-----GNVIYLMCGPCTSPEICRRLLTKLYKRLGEFNR 830 (831)
T ss_dssp ----------CHHHHHHHHHHHHT-TEECCCB-----TTEEEEECCTTCCHHHHHHHHHHHHHHHTTTCC
T ss_pred ccc--ccc-chHHHHHHHHHHHHC-CcEEEec-----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 000 000 001245677887765 9999885 3689998554 999999999999999987754
No 234
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.62 E-value=4.2e-14 Score=137.26 Aligned_cols=310 Identities=18% Similarity=0.190 Sum_probs=199.3
Q ss_pred HHHHHHH-HHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCC---C-CeEEEcCCCCCChHHHHHHcCCEEEEecCcC
Q 012124 135 ELRSAIC-HKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSP---G-DEVIIPAPFWVSYPEMARIADATPVILPTRI 209 (470)
Q Consensus 135 ~lr~~ia-~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~---g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~ 209 (470)
.|-+.++ +|++. .|++ .....++++|++.++..++.+.+++ | |.|+++.-++.+....+...|++++.++...
T Consensus 116 ~ltn~l~ld~L~~-~G~~-~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~ 193 (501)
T 3hl2_A 116 KITNSLVLDIIKL-AGVH-TVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVL 193 (501)
T ss_dssp HHHHHHHHHHHHH-TTCT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEE
T ss_pred HHHHHHHHHHHHH-cCCC-CCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeee
Confidence 3444444 45544 5876 3356889999997777777776654 4 9999999999999999999999999998732
Q ss_pred -CCCCccCHHhHhhhccC---CceEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccc-cCCCCcccc
Q 012124 210 -SENFLLDPKVLESKLTE---KSRLLILCSP-SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YAPATHTSF 283 (470)
Q Consensus 210 -~~~~~~d~~~l~~~l~~---~~~~i~l~~p-~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~-~~~~~~~~~ 283 (470)
++..++|++.+++++++ +..+++++++ .|-.+.+-+ +++|+++|++| |+++++|++|+... +....+...
T Consensus 194 d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd---I~eIaeIch~~-gIpllVDeAhGah~~~~~~lp~sA 269 (501)
T 3hl2_A 194 EGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR---LEELAVICANY-DIPHIVNNAYGVQSSKCMHLIQQG 269 (501)
T ss_dssp ETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC---HHHHHHHHHHH-TCCEEEECTTCTTCHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCccccc---HHHHHHHHHHc-CCeEEEeCcchhhhhhhhhhHHHH
Confidence 23577999999999954 2334444444 554445556 99999999999 99999999998633 111111111
Q ss_pred cccCCCCCceEEEeccCcccccccceeeEEE-cCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012124 284 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 362 (470)
Q Consensus 284 ~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~-~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 362 (470)
..+. .-.+++.|..|.+-+| +..|.+. -++++++++..... ...+........+..+.. +.+.++++.++
T Consensus 270 ~~~G---rAD~vVqS~HK~llvp-IGG~ii~~~d~e~l~~~~~~yP--Gr~S~Spsldl~~tLL~l---Gr~Gy~~ll~e 340 (501)
T 3hl2_A 270 ARVG---RIDAFVQSLDKNFMVP-VGGAIIAGFNDSFIQEISKMYP--GRASASPSLDVLITLLSL---GSNGYKKLLKE 340 (501)
T ss_dssp HHHS---CCCEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHHTSC--SCBCSHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HhcC---CCcEEEecccccceee-cCceEEEeCCHHHHHHHHHhCC--CCCCCcHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 1221 1447899999998433 3333443 36677777644221 112233344344555554 35667788888
Q ss_pred HHHHHHHHHHHhccCC---CCeec-CCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCE---E-EECCC---
Q 012124 363 FRERRDFLVKSFGELE---GVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV---A-LVPGD--- 431 (470)
Q Consensus 363 ~~~~~~~l~~~L~~~~---g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI---~-v~pg~--- 431 (470)
..+..+++.+.|+++. |-++. .+...+.+.+.+...- .. ...+...+-..|..+ +| - |.+|.
T Consensus 341 ~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~-~~-----~~~~~t~~gs~Lf~r-~vsG~Rvv~~~~~~~ 413 (501)
T 3hl2_A 341 RKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLD-EH-----RDKAVTQLGSMLFTR-QVSGARVVPLGSMQT 413 (501)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSC-TT-----TSCHHHHHHHHHHHT-TCCSCEEECTTCCEE
T ss_pred HHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEeccccc-cc-----ccccHHHHHHHHHhc-CCCcceeecCCCceE
Confidence 8888888888888742 33443 2334455666664320 00 001355677777766 44 3 34554
Q ss_pred -------CCCC------CCcEEEEeec--CHHHHHHHHHHHHHHHHhhCC
Q 012124 432 -------AFGD------DTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 432 -------~f~~------~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~~ 466 (470)
.|+. -.|+-++.+. +.+|++.++.+|++++.+++.
T Consensus 414 i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~ 463 (501)
T 3hl2_A 414 VSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRK 463 (501)
T ss_dssp ETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3442 2478777765 999999999999999987653
No 235
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.61 E-value=1.4e-13 Score=133.07 Aligned_cols=334 Identities=15% Similarity=0.093 Sum_probs=199.7
Q ss_pred EEccCCCCCCCChHHHHHHHHHHHHcC-CCC------CCCCcCcHHHHHHHHHHHHHHcCCCCCCC--cEEEecChHHHH
Q 012124 97 IRLAAGEPDFDTPVLIAEAGINAIREG-FTR------YTPNAGTLELRSAICHKLKEENGLSYTPD--QILVSNGAKQSI 167 (470)
Q Consensus 97 i~l~~g~~~~~~~~~~~~a~~~~~~~~-~~~------y~~~~g~~~lr~~ia~~l~~~~g~~~~~~--~i~it~g~~~al 167 (470)
|.|-..++- .++.+.+++...+.+. .-+ |+.-.-..++.....++..+.||...... ||-.-+| ++|.
T Consensus 57 ieLIASEN~--~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SG-s~AN 133 (490)
T 3ou5_A 57 LELIASENF--CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSG-SPAN 133 (490)
T ss_dssp EECCTTCCC--CCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSH-HHHH
T ss_pred ceEecCCCc--CCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCH-HHHH
Confidence 666555553 4677787777777653 222 32222334555555677778888543221 4444444 5667
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHHH--------HHHcC--CEEEEecCcCCCCCccCHHhHhhhcc-CCceEEEEcCC
Q 012124 168 LQAVLAVCSPGDEVIIPAPFWVSYPEM--------ARIAD--ATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSP 236 (470)
Q Consensus 168 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~--------~~~~g--~~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l~~p 236 (470)
..++.+|++|||+|+-.+....++... +...| .+.+++++++++ ..+|.|.+++... .++|+|+.-.-
T Consensus 134 ~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t-~~IDyd~~~~~A~~~kPklIi~G~S 212 (490)
T 3ou5_A 134 LAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKT-GLIDYNQLALTARLFRPRLIIAGTS 212 (490)
T ss_dssp HHHHHHHCC-CCCEECBC----------------------------CBCEETTT-TEECHHHHHHHHHHHCCSEEEECCS
T ss_pred HHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCC-CcccHHHHHHHHhhcCCCeEEECCc
Confidence 778999999999999888766655321 11122 355666666544 4699999999874 48999887655
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccc-cccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEc
Q 012124 237 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 315 (470)
Q Consensus 237 ~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~ 315 (470)
.+| ..++ .+++.++|.+. |.+++.|-+|-. +.-++. .++..... .|+.+|.+|+| +|-|-|.+.+
T Consensus 213 aY~--r~id---~~~~reIAd~v-GA~Lm~DmAHiaGLVA~g~-~psP~~~A-----DvVTtTTHKTL--rGPrGG~Il~ 278 (490)
T 3ou5_A 213 AYA--RLID---YARMREVCDEV-KAHLLADMAHISGLVAAKV-IPSPFKHA-----DIVTTTTHKTL--RGARSGLIFY 278 (490)
T ss_dssp SCC--SCCC---HHHHHHHHHHH-TCEEEEECGGGHHHHHTTS-SCCGGGTC-----SEEEEESSSTT--CSCSCEEEEE
T ss_pred cCc--cccC---HHHHHHHHhhc-ccEEEechhhhhhhhcccc-cCCccccc-----eEEeccccccc--cCCCceEEEe
Confidence 665 3556 67777778888 999999999764 333332 33322222 38889999997 7889999987
Q ss_pred CH---------------HHHHHHHHHhhhccCCCChHHHHHHHH-HHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC
Q 012124 316 PK---------------HFVAACNKIQSQFTSGASSISQKAGVA-ALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 379 (470)
Q Consensus 316 ~~---------------~~~~~l~~~~~~~~~~~~~~~q~a~~~-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 379 (470)
.+ ++.+++.+...+...+.+-.-..|+.+ ++... .....+...++..++.+.|.+.|.+. |
T Consensus 279 ~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea--~~p~fk~Ya~qVv~NAkaLA~~L~~~-G 355 (490)
T 3ou5_A 279 RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQA--CTPMFREYSLQVLKNARAMADALLER-G 355 (490)
T ss_dssp ECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred ccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHH--HhHhHHHHHHHHHHHHHHHHHHHHhC-C
Confidence 65 467777776554443333333333322 23211 12334555666677888888888887 8
Q ss_pred CeecC-CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEE----CCCCC-CCCCcEEEEeec------CH
Q 012124 380 VKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV----PGDAF-GDDTCIRISYAA------SL 447 (470)
Q Consensus 380 ~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~----pg~~f-~~~~~iRls~~~------~~ 447 (470)
+++.. ...+..+++++... + .+..+ ++.++++.||.+. |+..- ..++.|||+... .+
T Consensus 356 ~~vvsGgTdnHlvLvDl~~~-g---------~tG~~-ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e 424 (490)
T 3ou5_A 356 YSLVSGGTDNHLVLVDLRPK-G---------LDGAR-AERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFRE 424 (490)
T ss_dssp CEEGGGSCSSSEEEEECGGG-T---------CCHHH-HHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCH
T ss_pred CeeecCCCCceEEEEecccc-C---------CCHHH-HHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCH
Confidence 88763 23345577787432 1 13444 4456677899885 44310 124689999652 67
Q ss_pred HHHHHHHHHHHHHHH
Q 012124 448 TTLQAAVERIKKGLL 462 (470)
Q Consensus 448 ~~i~~~l~~l~~~l~ 462 (470)
+++++..+-|.+++.
T Consensus 425 ~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 425 DDFRRVVDFIDEGVN 439 (490)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888777776653
No 236
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.55 E-value=3.2e-13 Score=132.90 Aligned_cols=313 Identities=17% Similarity=0.171 Sum_probs=191.5
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCC----CCeEEEcCCCCCChHHHHHHcCCEEEEecC
Q 012124 132 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSP----GDEVIIPAPFWVSYPEMARIADATPVILPT 207 (470)
Q Consensus 132 g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~----gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 207 (470)
+...+.+.+..++.+..|++ +....++++|++.+..+++.+.+++ ++.|+++.-+|.+....+...|+.++.++.
T Consensus 95 ~~~~~e~~~~~~~~~~lGlp-~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~ 173 (450)
T 3bc8_A 95 LLNKITNSLVLNVIKLAGVH-SVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIEN 173 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHHhCCCC-CCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEe
Confidence 34567778888888778875 3345688888875555454444443 899999999999999999999999998876
Q ss_pred cC-CCCCccCHHhHhhhccC---CceEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccc
Q 012124 208 RI-SENFLLDPKVLESKLTE---KSRLLILCSP-SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 282 (470)
Q Consensus 208 ~~-~~~~~~d~~~l~~~l~~---~~~~i~l~~p-~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~ 282 (470)
.. ++.+.+|++.|++++++ +.+++++.+| .+.+|.+-+ +++|+++|++| |+++++|++|+..... ...
T Consensus 174 ~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd---l~~Ia~ia~~~-gi~l~VD~A~G~~~~~---~~~ 246 (450)
T 3bc8_A 174 VLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR---LEELAVICANY-DIPHVVNNAYGLQSSK---CMH 246 (450)
T ss_dssp EEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC---HHHHHHHHHHH-TCCEEEECTTTTTCHH---HHH
T ss_pred eecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC---HHHHHHHHHHC-CCeEEEECCCchhhhh---hHh
Confidence 42 23567999999999954 3455566566 455677777 99999999999 9999999999853211 111
Q ss_pred c--cccCCCCCceEEEeccCcccccccceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHH
Q 012124 283 F--ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 359 (470)
Q Consensus 283 ~--~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~ 359 (470)
+ ..+.. ..-..++.|.+|.+. .-...+++.. +++.++.+..... ...+..++.......+..| .+.+++.
T Consensus 247 l~~~a~~~-~~AD~~v~S~HK~l~-a~~~~~~l~~rd~~~~~~~~~~~~--g~~s~SpsL~l~~~l~~~G---~~g~~~~ 319 (450)
T 3bc8_A 247 LIQQGARV-GRIDAFVQSLDKNFM-VPVGGAIIAGFNEPFIQDISKMYP--GRASASPSLDVLITLLSLG---CSGYRKL 319 (450)
T ss_dssp HHHHHHHH-SCCCEEEEEHHHHHS-CCSSCEEEEESCHHHHHHHHHHSC--SCBCSHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHhcc-cCCCEEEECCccCCC-chhccEEEEecCHHHHHHHHHHhh--cCCcccHHHHHHHHHHHHH---HHHHHHH
Confidence 1 11100 122367889999985 4445566664 6666665544221 1122333434444444432 4455566
Q ss_pred HHHHHHHHHHHHHHhccCC---CCeecCCC-ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcC--CEEEEC----
Q 012124 360 VKAFRERRDFLVKSFGELE---GVKMSEPQ-GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA--QVALVP---- 429 (470)
Q Consensus 360 ~~~~~~~~~~l~~~L~~~~---g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--gI~v~p---- 429 (470)
.+...+..+++.+.|++++ |..+.... .+.-..+.++.... ....|...+.-.+.... |.-+.+
T Consensus 320 i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~------~~~~D~tkl~i~~~~~g~sG~~v~~~~~~ 393 (450)
T 3bc8_A 320 LKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDG------HHDKAVTQLGSMLFTRQVSGARAVPLGNV 393 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSS------SSSCHHHHHHHHHHHTTCCSCEEECSCCE
T ss_pred HHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccc------cccCCCceeEEEecCCCCccceeeecccc
Confidence 5556666777777777665 66554322 11111222221100 00014556666654431 333331
Q ss_pred ----CCC---C------CCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 430 ----GDA---F------GDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 430 ----g~~---f------~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
|.. | +...++-+.++. ++++++.++++|++++++++
T Consensus 394 ~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~ 444 (450)
T 3bc8_A 394 QTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVR 444 (450)
T ss_dssp EEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 111 1 123566666665 89999999999999876553
No 237
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=99.40 E-value=4e-15 Score=122.98 Aligned_cols=55 Identities=7% Similarity=-0.110 Sum_probs=52.1
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVD 64 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~ 64 (470)
-..|.+|.++||+||||.|+||++|||||+| ||.+|+.+|+|++++| +||||+..
T Consensus 24 ~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~g-~G~~V~~~ 81 (134)
T 4ham_A 24 KEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKG-KGTFIANQ 81 (134)
T ss_dssp HHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT-TEEEECCC
T ss_pred HHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcC-cEEEEeCC
Confidence 3579999999999999999999999999999 9999999999999999 99999754
No 238
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=99.32 E-value=1.1e-13 Score=112.66 Aligned_cols=55 Identities=9% Similarity=-0.139 Sum_probs=50.8
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVD 64 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~ 64 (470)
-..|.+|.++||++|||.|+||+.|||||+| ||.+|+++|+|++++| +|+||+..
T Consensus 21 ~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~-~G~~V~~~ 78 (126)
T 3ic7_A 21 CDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNKRG-IGFFVASG 78 (126)
T ss_dssp HHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETT-TEEEECTT
T ss_pred HHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEcC-CccEEccC
Confidence 3578999999999999999999999999999 9999999999999999 99999753
No 239
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=99.25 E-value=1.4e-13 Score=111.89 Aligned_cols=55 Identities=11% Similarity=-0.039 Sum_probs=51.9
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVD 64 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~ 64 (470)
...|.+|.++||++|||.|+||++|||||+| ||.+|+++|+|++++| +|+||+..
T Consensus 23 ~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g-~G~~V~~~ 80 (125)
T 3neu_A 23 KKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG-MGSFVTSD 80 (125)
T ss_dssp HHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT-TEEEECCC
T ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecC-CEEEEecC
Confidence 3578999999999999999999999999999 9999999999999999 99999763
No 240
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=99.23 E-value=2.8e-13 Score=110.53 Aligned_cols=54 Identities=9% Similarity=-0.108 Sum_probs=51.4
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
...|.+|.++||++|||.|+||++|||||+| ||.+|+.+|+|++++| +|+||+.
T Consensus 14 ~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~g-~G~~V~~ 70 (129)
T 2ek5_A 14 EDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRG-IGMFVSA 70 (129)
T ss_dssp HHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETT-TEEEECT
T ss_pred HHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecC-CEEEEec
Confidence 3578999999999999999999999999999 9999999999999999 9999975
No 241
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=99.21 E-value=1.8e-13 Score=109.21 Aligned_cols=54 Identities=15% Similarity=0.002 Sum_probs=51.4
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
-..|.+|.++||++|||.|+||++|||||+| ||.+|+++|+|++++| +|+||+.
T Consensus 19 ~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~~-~G~~V~~ 75 (113)
T 3tqn_A 19 VEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRRG-LGMLVKA 75 (113)
T ss_dssp HHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT-TEEEECT
T ss_pred HHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecC-CeEEEeC
Confidence 4578999999999999999999999999999 9999999999999999 9999975
No 242
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=99.18 E-value=4.2e-13 Score=109.15 Aligned_cols=54 Identities=7% Similarity=0.044 Sum_probs=51.3
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
...|.+|.++||++|||.|+||+.|||||+| ||.+|+.+|+|++++| +||||+.
T Consensus 21 ~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g-~G~~V~~ 77 (126)
T 3by6_A 21 KNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPG-KGTFITG 77 (126)
T ss_dssp HHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT-TEEEECS
T ss_pred HHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecC-CeEEEcc
Confidence 3578999999999999999999999999999 9999999999999999 9999975
No 243
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=99.04 E-value=6.7e-12 Score=114.08 Aligned_cols=55 Identities=11% Similarity=-0.066 Sum_probs=49.9
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVD 64 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~ 64 (470)
...|.+|.++||++|||.|+||++|||||+| |+++|+++|+|+.++| +||||...
T Consensus 19 ~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g-~G~~V~~~ 76 (236)
T 3edp_A 19 KDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNG-VGLYVQPK 76 (236)
T ss_dssp HHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETT-TEEEECCC
T ss_pred HHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEECC-ceEEEccC
Confidence 3579999999999999999999999999999 9999999999999999 99999653
No 244
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=99.02 E-value=6.7e-12 Score=114.84 Aligned_cols=54 Identities=13% Similarity=-0.108 Sum_probs=51.4
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
-..|.+|.++||+||||.|+||++|||||+| |+.+|+.+|+|+.++| +||||+.
T Consensus 17 ~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~~g-~G~~V~~ 73 (239)
T 1hw1_A 17 IESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHG-KPTKVNN 73 (239)
T ss_dssp HHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT-EEEEECC
T ss_pred HHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEecC-CCcEeeC
Confidence 3578999999999999999999999999999 9999999999999999 9999975
No 245
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=99.00 E-value=3.1e-11 Score=110.55 Aligned_cols=55 Identities=11% Similarity=-0.108 Sum_probs=6.9
Q ss_pred ccccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 8 STSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 8 ~~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
....|.+|.++||++|||.|+||++|||||+| |+++|+++|+|+.++| +||||..
T Consensus 25 l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g-~G~~V~~ 82 (247)
T 2ra5_A 25 LEAAIEHGALTPGSLLGNEIELAARLGLSRPTVRQAIQSLVDKGLLVRRRG-VGTQVVH 82 (247)
T ss_dssp -------------------------------------------CEEEEEC---------
T ss_pred HHHHHHhCCCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcC-ceeEEec
Confidence 45679999999999999999999999999999 9999999999999999 9999964
No 246
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=98.97 E-value=1.9e-11 Score=111.72 Aligned_cols=54 Identities=11% Similarity=-0.020 Sum_probs=51.3
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
...|.+|.++||++|||.|+||++|||||+| |+++|+++|+|++++| +||||+.
T Consensus 20 ~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g-~G~~V~~ 76 (243)
T 2wv0_A 20 KTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKG-RGTFVSK 76 (243)
T ss_dssp HHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT-SCEEECC
T ss_pred HHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEeCC-CeEEEeC
Confidence 3578999999999999999999999999999 9999999999999999 9999965
No 247
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=98.97 E-value=4.8e-11 Score=93.41 Aligned_cols=54 Identities=7% Similarity=-0.003 Sum_probs=51.1
Q ss_pred ccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccc
Q 012124 10 SFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVD 64 (470)
Q Consensus 10 ~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~ 64 (470)
..|.+|.+.+|++|||.++||+.|+||++| |+.+|+++|+|++++| +|+||...
T Consensus 22 ~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~~g-~G~~v~~~ 78 (102)
T 1v4r_A 22 TLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGA-LGTVVEKN 78 (102)
T ss_dssp HHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETT-TEEESCSC
T ss_pred HHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC-CeEEEccC
Confidence 568999999999999999999999999999 9999999999999999 99999754
No 248
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=98.96 E-value=2e-11 Score=113.21 Aligned_cols=55 Identities=9% Similarity=-0.049 Sum_probs=50.0
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVD 64 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~ 64 (470)
...|.+|.++||++|||.|+||++|||||+| |+++|+++|+|+.++| +||||...
T Consensus 39 ~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g-~G~~V~~~ 96 (272)
T 3eet_A 39 RKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGRSG-SGTYVRER 96 (272)
T ss_dssp HHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCC---EEECCC
T ss_pred HHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC-ceEEEecC
Confidence 3568999999999999999999999999999 9999999999999999 99999764
No 249
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=98.92 E-value=3.6e-11 Score=109.54 Aligned_cols=55 Identities=11% Similarity=0.038 Sum_probs=51.6
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVD 64 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~ 64 (470)
...|.+|.++||++|||.|+||+++||||+| |+++|+++|+|+.++| +||||...
T Consensus 15 ~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~~g-~G~~V~~~ 72 (239)
T 3bwg_A 15 ETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRG-SGIFVRKH 72 (239)
T ss_dssp HHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETT-TEEEECCC
T ss_pred HHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEeCC-ceEEEecC
Confidence 3568899999999999999999999999999 9999999999999999 99999753
No 250
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=98.85 E-value=7.9e-11 Score=107.80 Aligned_cols=51 Identities=8% Similarity=-0.143 Sum_probs=47.9
Q ss_pred ccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccc
Q 012124 10 SFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVD 64 (470)
Q Consensus 10 ~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~ 64 (470)
..|. | ++||++|||.|+||++|||||+| |+++|+++|+|+. +| +||||...
T Consensus 25 ~~I~-~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~-~g-~Gt~V~~~ 78 (248)
T 3f8m_A 25 RMLD-G-MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER-RG-RTTVVARP 78 (248)
T ss_dssp HHHH-H-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE-ET-TEEEECCC
T ss_pred HHHh-C-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe-CC-CEEEEccC
Confidence 4577 8 99999999999999999999999 9999999999999 99 99999764
No 251
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=98.79 E-value=8.8e-11 Score=91.23 Aligned_cols=52 Identities=8% Similarity=-0.112 Sum_probs=48.6
Q ss_pred ccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhh--cCCCccccc
Q 012124 10 SFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA--CSGVEEVQV 63 (470)
Q Consensus 10 ~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~--g~sG~~V~~ 63 (470)
..|. |.++||++|||.++||+.|||||+| |+.+|+++|+|+.++ + +|+||+.
T Consensus 31 ~~I~-~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~-~G~~V~~ 87 (102)
T 2b0l_A 31 EHIF-EELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGM-KGTYIKV 87 (102)
T ss_dssp HHHT-TSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSS-SCEEEEE
T ss_pred HHHH-hhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCC-CcEEEec
Confidence 4577 9999999999999999999999999 999999999999999 5 8999964
No 252
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=98.78 E-value=1.4e-10 Score=104.62 Aligned_cols=53 Identities=4% Similarity=-0.111 Sum_probs=50.2
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
-..|.+|.++||+||| .++||++|||||+| |+.+|+.+|+|+.++| +|+||+.
T Consensus 26 ~~~I~~g~l~pG~~L~-E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~~-~G~~V~~ 81 (222)
T 3ihu_A 26 MSGLELGTFVPGQRLV-ETDLVAHFGVGRNSVREALQRLAAEGIVDLQRH-RGAVIRR 81 (222)
T ss_dssp HHHHHHTSSCTTCEEC-HHHHHHHHTCCHHHHHHHHHHHHHTTSEEECST-TCEEECC
T ss_pred HHHHHhCCCCCCCccC-HHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC-CCeEEec
Confidence 3568999999999999 99999999999999 9999999999999999 9999965
No 253
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=98.73 E-value=3.8e-10 Score=103.07 Aligned_cols=55 Identities=5% Similarity=-0.089 Sum_probs=49.7
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhh--hhc-CCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRV--MAC-SGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s--~~g-~sG~~V~~ 63 (470)
-..|.+|.++||+||||.|+||++|||||+| |+..|+.+|+|+. ++| .+|+||+.
T Consensus 14 ~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~~~~~~~~~G~~V~~ 74 (239)
T 2di3_A 14 TEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGTIITA 74 (239)
T ss_dssp HHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGGGCCEECC
T ss_pred HHHHHhCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeecccCCCCCceeeC
Confidence 3578999999999999999999999999999 9999999999999 643 17999975
No 254
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=98.70 E-value=3.7e-10 Score=101.54 Aligned_cols=53 Identities=11% Similarity=-0.124 Sum_probs=50.2
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
-..|.+|.++||++| |.++||++|||||+| |+..|+.+|+|+.++| +|+||+.
T Consensus 22 ~~~I~~g~l~pG~~L-~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~-~G~~V~~ 77 (218)
T 3sxy_A 22 KEMILNHELKLGEKL-NVRELSEKLGISFTPVRDALLQLATEGLVKVVPR-VGFFVTD 77 (218)
T ss_dssp HHHHHTTSSCTTCEE-CHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETT-TEEEECC
T ss_pred HHHHHhCCCCCCCEe-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC-CceEEcC
Confidence 356899999999999 899999999999999 9999999999999999 9999975
No 255
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=98.60 E-value=1.1e-09 Score=99.89 Aligned_cols=52 Identities=10% Similarity=-0.028 Sum_probs=49.6
Q ss_pred ccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 10 SFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 10 ~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
..|.+|.++||++| |.++||++|||||+| |+.+|+.+|+|+.+++ +|+||..
T Consensus 39 ~~I~~g~l~pG~~L-~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~-~G~~V~~ 93 (239)
T 2hs5_A 39 DAIIDGTFRPGARL-SEPDICAALDVSRNTVREAFQILIEDRLVAHELN-RGVFVRV 93 (239)
T ss_dssp HHHHHTSSCTTCEE-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT-TEEEECC
T ss_pred HHHHcCCCCCcCEe-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC-CeeEEeC
Confidence 56889999999999 899999999999999 9999999999999999 9999975
No 256
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=98.46 E-value=6.2e-09 Score=94.57 Aligned_cols=53 Identities=13% Similarity=0.004 Sum_probs=49.8
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
-..|.+|.++||++| +.++||++|||||+| |+..|+.+|+|+.++| +|+||..
T Consensus 36 ~~~I~~g~l~pG~~L-~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~~-~G~~V~~ 91 (237)
T 3c7j_A 36 RNAIIDGSLPSGTAL-RQQELATLFGVSRMPVREALRQLEAQSLLRVETH-KGAVVAP 91 (237)
T ss_dssp HHHHHTSSSCTTCBC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT-TEEEECC
T ss_pred HHHHHhCCCCCcCee-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC-CceEEec
Confidence 346889999999999 899999999999999 9999999999999999 9999965
No 257
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=97.62 E-value=7.3e-07 Score=73.64 Aligned_cols=46 Identities=0% Similarity=-0.248 Sum_probs=40.6
Q ss_pred ccccCcccCCCCCCCCCCCCccccC--------------Ccccc---ccccccccchhhhhhcCCCccccc
Q 012124 10 SFISNPVNFGHSKIPAQIPGSVSFP--------------SRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 10 ~~i~~~~~~~g~~lPs~R~La~~l~--------------vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
..|.+| .||+ |+||+.|| |||+| ||++|+++|+|+.+++ +|+||+.
T Consensus 61 ~~i~~g--~~G~-----~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~~-~G~~Vt~ 123 (150)
T 2v7f_A 61 RVYLDG--PVGI-----ERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPG-KGRVITP 123 (150)
T ss_dssp HHHHHC--SBCH-----HHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEETT-TEEEECH
T ss_pred HHHHhC--CCCH-----HHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEeCC-CceEECC
Confidence 346666 6665 99999999 99999 9999999999999989 9999965
No 258
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=97.15 E-value=9.6e-06 Score=63.89 Aligned_cols=50 Identities=4% Similarity=-0.165 Sum_probs=42.6
Q ss_pred cccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhh----hcCCCcccc
Q 012124 11 FISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVM----ACSGVEEVQ 62 (470)
Q Consensus 11 ~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~----~g~sG~~V~ 62 (470)
.|..+.+.+|++ +|.++||+.+|||++| ++..|+++|+|+.+ ++ +|+||.
T Consensus 22 ~Il~~l~~~g~~-~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~~~~~~~-~g~~v~ 78 (110)
T 1q1h_A 22 DVLRILLDKGTE-MTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKD-SGWFIY 78 (110)
T ss_dssp HHHHHHHHHCSC-BCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEEEC----CCCCEE
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecccCC-CceEEE
Confidence 456677789988 5899999999999999 99999999999988 78 898885
No 259
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=96.57 E-value=0.0002 Score=60.61 Aligned_cols=42 Identities=10% Similarity=-0.077 Sum_probs=38.1
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhh
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRV 52 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s 52 (470)
-..|.+ .|.||.+| |.++||+.+||||+| |+.+|+++|+|+.
T Consensus 15 ~~~Il~-~l~~~~~l-s~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 15 DRNILN-ELQKDGRI-SNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp HHHHHH-HHHHCSSC-CTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred HHHHHH-HHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 345777 89999999 799999999999999 9999999999975
No 260
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=95.65 E-value=0.00051 Score=50.13 Aligned_cols=44 Identities=7% Similarity=-0.272 Sum_probs=36.7
Q ss_pred CCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccc
Q 012124 18 FGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQ 62 (470)
Q Consensus 18 ~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~ 62 (470)
.||++++ ..+||+.||||++| +...|+++|+|+...++.|+|..
T Consensus 23 ~pg~~~t-~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W~i 69 (81)
T 1qbj_A 23 GEGKATT-AHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKI 69 (81)
T ss_dssp CTTCCBC-HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEEEE
T ss_pred CCCCCcC-HHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCeeEE
Confidence 4777876 78999999999999 99999999999877554577653
No 261
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=94.78 E-value=0.00087 Score=47.09 Aligned_cols=35 Identities=3% Similarity=-0.290 Sum_probs=31.0
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
|..+||+.||||++| ..+.|+++|+|.+ .. .|+|.
T Consensus 27 s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~-~~-~G~y~ 64 (67)
T 2heo_A 27 AIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS-PS-PKYWS 64 (67)
T ss_dssp EHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE-EE-TTEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCcEec-CC-CceEe
Confidence 467999999999999 9999999999988 56 78874
No 262
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=94.52 E-value=0.0012 Score=47.59 Aligned_cols=35 Identities=9% Similarity=-0.116 Sum_probs=31.1
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhhcCCC
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGV 58 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG 58 (470)
||.|+||+.||||.+| -.+.|+++|+|...+|..|
T Consensus 25 psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~ggr~ 62 (77)
T 2jt1_A 25 VKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVNAGKG 62 (77)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESCSSS
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCCCCC
Confidence 8999999999999999 8899999999988865344
No 263
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=94.03 E-value=0.0036 Score=50.41 Aligned_cols=41 Identities=2% Similarity=-0.237 Sum_probs=32.2
Q ss_pred CCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 21 SKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 21 ~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
.+..|.++||+.++||++| ++..|++.|+|++..|..|.|+
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~ 67 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYV 67 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEE
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceE
Confidence 3455789999999999999 9999999999999876345554
No 264
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=93.22 E-value=0.0035 Score=52.25 Aligned_cols=39 Identities=3% Similarity=-0.084 Sum_probs=35.3
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
.+.++||+.|+||++| +.+.|+++|||+.+++ +|++++.
T Consensus 55 ~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~~-~~~~lT~ 96 (155)
T 2h09_A 55 ARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPW-RGVFLTA 96 (155)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETT-TEEEECH
T ss_pred cCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEecC-CceEECh
Confidence 4789999999999999 9999999999998888 8888764
No 265
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=91.95 E-value=0.0052 Score=44.36 Aligned_cols=41 Identities=7% Similarity=-0.228 Sum_probs=32.9
Q ss_pred CCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 20 HSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 20 g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
|++++ ..+||+.||||++| ....|+++|+|+...+..|+|.
T Consensus 29 ~~~~t-~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~~W~ 72 (77)
T 1qgp_A 29 GKATT-AHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWK 72 (77)
T ss_dssp SSCEE-HHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSSCEEE
T ss_pred CCCcC-HHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCceE
Confidence 44554 78999999999999 8899999999988754356665
No 266
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=91.82 E-value=0.0076 Score=44.00 Aligned_cols=37 Identities=3% Similarity=-0.175 Sum_probs=30.6
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhh---hhcCCCccc
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRV---MACSGVEEV 61 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s---~~g~sG~~V 61 (470)
+|..+||+.+|||++| ..+.|+++|+|+. +.| +|+|.
T Consensus 15 ~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~~~~g-r~~~y 57 (81)
T 2htj_A 15 GKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRG-MATYW 57 (81)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSS-SSCEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeccCCC-CcEEE
Confidence 6899999999999999 8999999999983 234 55554
No 267
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=90.49 E-value=0.016 Score=47.49 Aligned_cols=43 Identities=5% Similarity=-0.224 Sum_probs=36.6
Q ss_pred CCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 19 GHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 19 ~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
++.+..|.++||+.+++|+++ ...+|.+.|+|+++.|..|-|.
T Consensus 24 ~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~ 69 (143)
T 3t8r_A 24 EGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQ 69 (143)
T ss_dssp TTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEE
T ss_pred CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCee
Confidence 455567899999999999999 9999999999999988445554
No 268
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=90.22 E-value=0.018 Score=48.04 Aligned_cols=43 Identities=2% Similarity=-0.269 Sum_probs=37.0
Q ss_pred CCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 19 GHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 19 ~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
++.+..|.++||+.+++|+++ ...+|.+.|+|+|+.|..|-|.
T Consensus 40 ~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~ 85 (159)
T 3lwf_A 40 IGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYV 85 (159)
T ss_dssp TTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEE
T ss_pred CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceE
Confidence 455667899999999999999 9999999999999988445554
No 269
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=90.08 E-value=0.056 Score=51.49 Aligned_cols=28 Identities=4% Similarity=-0.218 Sum_probs=0.0
Q ss_pred ccCcccCCCCCCCCCCCCccccCCcccc
Q 012124 12 ISNPVNFGHSKIPAQIPGSVSFPSRYLH 39 (470)
Q Consensus 12 i~~~~~~~g~~lPs~R~La~~l~vs~~T 39 (470)
|+.|..+||+|+|+++++|+..|||++|
T Consensus 1 ~~~g~~~~g~~~~ti~diA~~agVS~~T 28 (355)
T 3e3m_A 1 MSLDSRKPGHRPVTMRDVAKAAGVSRMT 28 (355)
T ss_dssp ----------------------------
T ss_pred CCCcCcCCCCCCCcHHHHHHHhCCCHHH
Confidence 5679999999999999999999999999
No 270
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=89.91 E-value=0.015 Score=48.02 Aligned_cols=40 Identities=5% Similarity=-0.212 Sum_probs=32.8
Q ss_pred CCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccc
Q 012124 22 KIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQ 62 (470)
Q Consensus 22 ~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~ 62 (470)
+..+.++||+.++||+++ .+.+|.+.|+|+++.| .|-|+-
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG-~GGy~L 71 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG-PGGAGL 71 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC----CCEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC-CCceEe
Confidence 346689999999999999 9999999999999988 777763
No 271
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=88.32 E-value=0.02 Score=46.74 Aligned_cols=39 Identities=3% Similarity=-0.231 Sum_probs=33.4
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
++.++||+.++||++| +.+.|+++|||+..++ .+++++.
T Consensus 23 ~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~~-~~~~LT~ 64 (142)
T 1on2_A 23 ARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKY-RGLVLTS 64 (142)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT-TEEEECH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeeC-ceEEEch
Confidence 6889999999999999 9999999999998765 5555543
No 272
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=86.33 E-value=0.058 Score=45.08 Aligned_cols=41 Identities=12% Similarity=-0.100 Sum_probs=34.4
Q ss_pred CCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcc
Q 012124 19 GHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEE 60 (470)
Q Consensus 19 ~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~ 60 (470)
+|.+ .|.++||+.++||+++ ...+|.+.|+|+|+.|..|-|
T Consensus 25 ~~~~-~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG~~GGy 68 (162)
T 3k69_A 25 RDSK-VASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGY 68 (162)
T ss_dssp TTSC-BCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEE
T ss_pred CCCC-cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCe
Confidence 4544 5789999999999999 999999999999998844434
No 273
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=85.12 E-value=0.049 Score=51.17 Aligned_cols=37 Identities=5% Similarity=-0.155 Sum_probs=32.9
Q ss_pred CCCCCccccCCcccc---ccccccccch-hhhhhcCCCcccc
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRV-LRVMACSGVEEVQ 62 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~-i~s~~g~sG~~V~ 62 (470)
|.-+||++|||||++ +.+.|+++|+ |++++| +||.+.
T Consensus 21 Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~~~~~-~GY~L~ 61 (323)
T 3rkx_A 21 SGQSIAESLNISRTAVKKVIDQLKLEGCKIDSVNH-KGHLLQ 61 (323)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEEETT-TEEEEE
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHhcCCeEEEeCC-CeEEEe
Confidence 466999999999999 9999999999 788888 898764
No 274
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=84.01 E-value=0.043 Score=39.67 Aligned_cols=32 Identities=0% Similarity=-0.207 Sum_probs=27.9
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhhc
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMAC 55 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g 55 (470)
-|..+||+.||||++| -...|+++|+|....+
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~ 65 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDD 65 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCC
Confidence 5678999999999999 7888999999988633
No 275
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=83.89 E-value=0.099 Score=41.75 Aligned_cols=35 Identities=3% Similarity=-0.066 Sum_probs=31.8
Q ss_pred CCCCCCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 20 HSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 20 g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
|..-||+.+||+.+++|.+| +.+.|+++|||+-+.
T Consensus 48 ~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 48 GVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp TCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 66679999999999999999 999999999997754
No 276
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=82.22 E-value=0.048 Score=41.82 Aligned_cols=36 Identities=3% Similarity=-0.190 Sum_probs=29.2
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhhcCCCcc
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEE 60 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~ 60 (470)
++..+||+.+|||++| ..+.|+++|||+.... .+..
T Consensus 37 ~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~-~~~~ 75 (109)
T 2d1h_A 37 ITSEELADIFKLSKTTVENSLKKLIELGLVVRTKT-EGKK 75 (109)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-----
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeecc-ccCC
Confidence 5788999999999999 9999999999988755 4443
No 277
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=80.55 E-value=0.089 Score=39.41 Aligned_cols=36 Identities=6% Similarity=-0.183 Sum_probs=31.9
Q ss_pred CCCCCCCCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 18 FGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 18 ~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.||..+ +..+||+.++++++| ..+.|+++|||+..+
T Consensus 32 ~~g~~~-s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~~ 70 (96)
T 2obp_A 32 NGATPW-SLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSV 70 (96)
T ss_dssp TTCCCC-BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCc-CHHHHHHHhCCchhhHHHHHHHHHHCCCEEeec
Confidence 467776 899999999999999 999999999998754
No 278
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=80.12 E-value=0.087 Score=42.57 Aligned_cols=38 Identities=0% Similarity=-0.190 Sum_probs=31.9
Q ss_pred CCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccc
Q 012124 23 IPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQ 62 (470)
Q Consensus 23 lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~ 62 (470)
-++.++||+.++||++| +.+.|+++|||+... .+++++
T Consensus 31 ~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~--~~~~Lt 71 (139)
T 2x4h_A 31 GAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE--DGVWIT 71 (139)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET--TEEEEC
T ss_pred CcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC--CeEEEC
Confidence 36899999999999999 999999999998764 355544
No 279
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=80.07 E-value=0.083 Score=37.97 Aligned_cols=29 Identities=3% Similarity=-0.191 Sum_probs=26.8
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
+..+||+.|+||..| =.++|+++|+|+..
T Consensus 18 sv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 18 EAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred cHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 567999999999999 99999999999877
No 280
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=77.76 E-value=5.2 Score=37.58 Aligned_cols=31 Identities=10% Similarity=-0.083 Sum_probs=27.3
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhhc
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMAC 55 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g 55 (470)
+.++||+.+||++++ +.+.|+++|+|+...|
T Consensus 34 t~~eia~~~gv~~~~Vy~~L~~L~~~GlV~~~~g 67 (342)
T 3qph_A 34 TAKEISTKSGIPYNRVYDTISSLKLRGFVTEIEG 67 (342)
T ss_dssp HHSCCSSSTTSSSCSCCHHHHHHHHHTSEEEECC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcC
Confidence 357999999999999 8999999999987754
No 281
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=77.58 E-value=0.23 Score=40.00 Aligned_cols=35 Identities=9% Similarity=-0.012 Sum_probs=31.9
Q ss_pred CCCCCCCCCCCccccCCcccc---ccccccccchhhhh
Q 012124 19 GHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 19 ~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
-|...||+.+||+.+++|.++ ..+.|+++|+|+-.
T Consensus 47 ~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 47 KGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp TTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEE
T ss_pred cCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 467889999999999999999 99999999999763
No 282
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=77.49 E-value=0.1 Score=42.34 Aligned_cols=35 Identities=0% Similarity=-0.129 Sum_probs=29.6
Q ss_pred cCCCCCCCCCCCCccccCCcccc---ccccccccchhhh
Q 012124 17 NFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRV 52 (470)
Q Consensus 17 ~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s 52 (470)
|..+.++ |.++||+.+|+|++| ..++|+++|+|..
T Consensus 13 L~~~~~~-~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 13 LEKDART-PFTEIAKKLGISETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp HHHCTTC-CHHHHHHHHTSCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEec
Confidence 3445566 599999999999999 9999999999863
No 283
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=76.95 E-value=0.14 Score=44.22 Aligned_cols=34 Identities=6% Similarity=-0.124 Sum_probs=29.0
Q ss_pred CCCCCCCCccccCCcccc---ccccccccchhhhhhc
Q 012124 22 KIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMAC 55 (470)
Q Consensus 22 ~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g 55 (470)
.-||.|+||+.+|+|.+| -.+.|+++|+|+..++
T Consensus 23 ~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~~~ 59 (196)
T 3k2z_A 23 YPPSVREIARRFRITPRGALLHLIALEKKGYIERKNG 59 (196)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC--
T ss_pred CCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEecCC
Confidence 349999999999999999 7889999999987654
No 284
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=75.82 E-value=0.25 Score=38.66 Aligned_cols=30 Identities=0% Similarity=-0.212 Sum_probs=27.4
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
+..+||+.+|+|++| ..+.|++.|+|+.+.
T Consensus 36 ~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~ 68 (118)
T 2jsc_A 36 YPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATY 68 (118)
T ss_dssp STTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEE
Confidence 678999999999999 889999999998764
No 285
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=75.69 E-value=0.14 Score=37.59 Aligned_cols=30 Identities=3% Similarity=-0.157 Sum_probs=27.1
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
+..+||+.|+||..| -.++|+++|+|....
T Consensus 18 sv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 18 EAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp EHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred cHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 467899999999999 999999999998773
No 286
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=74.90 E-value=0.22 Score=40.65 Aligned_cols=36 Identities=11% Similarity=-0.104 Sum_probs=33.2
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
|.++||+.+++|.+. ...+|.+.|+|+|..| .|-|.
T Consensus 25 s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG-~GGy~ 63 (145)
T 1xd7_A 25 SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG-VPGAS 63 (145)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS-SSSCE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC-CCCce
Confidence 899999999999999 9999999999999988 77665
No 287
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=74.51 E-value=0.26 Score=31.63 Aligned_cols=25 Identities=4% Similarity=-0.029 Sum_probs=20.4
Q ss_pred CCCCCccccCCccccccccccccch
Q 012124 25 AQIPGSVSFPSRYLHNFNLNNDRRV 49 (470)
Q Consensus 25 s~R~La~~l~vs~~TAy~~L~~~G~ 49 (470)
|.+++|+.+|||++|.|.-+...|+
T Consensus 23 s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 23 PRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp CHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CHHHHHHHHCCCHHHHHHHHHHccc
Confidence 7899999999999997777666554
No 288
>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, paenibacill GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* 3sur_A* 3sus_A* 3sut_A* 3suu_A* 3suv_A* 3suw_A*
Probab=74.44 E-value=11 Score=37.54 Aligned_cols=112 Identities=13% Similarity=0.183 Sum_probs=69.5
Q ss_pred CCCCCCCcEEEecChHHHHHHHHHHhc---CC---------C-C-----eEEEcCCCCCC-------------------h
Q 012124 149 GLSYTPDQILVSNGAKQSILQAVLAVC---SP---------G-D-----EVIIPAPFWVS-------------------Y 191 (470)
Q Consensus 149 g~~~~~~~i~it~g~~~al~~~~~~l~---~~---------g-d-----~Vlv~~p~y~~-------------------~ 191 (470)
.+.++++.|.|+.++..++.-.+++|. .. | . ..+.+.|.|+- +
T Consensus 125 ~L~v~~~~i~I~a~~~~G~~~glqTL~QLl~~~~~~~~~~~g~~~~lp~~~I~D~Prf~~RG~mLDvsR~f~~~~~ik~~ 204 (525)
T 3gh5_A 125 DLITTSNQVTLTANKPEGVFRGNQTLLQLLPAGIEKNTVVSGVQWVIPHSNISDKPEYEYRGLMLDVARHFFTVDEVKRQ 204 (525)
T ss_dssp EEEECSSEEEEEESSHHHHHHHHHHHHHHSCTTTTCSSCCCSCCCEEEEEEEEECCSCSEEEEEEECSSSCCCHHHHHHH
T ss_pred EEEEeCCEEEEEECCHHHHHHHHHHHHHHHhhhccccccccCcceeccceEEeecCCcceeccccCCCCCCCCHHHHHHH
Confidence 344677889998877777666665542 22 2 1 13456676651 2
Q ss_pred HHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEE
Q 012124 192 PEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 265 (470)
Q Consensus 192 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI 265 (470)
.+.+...+.+....-+.++.+|.+..+...++-..... .......|-.++.+++++|++.|+++ ++-||
T Consensus 205 id~mA~~KlN~lH~HltDdqgwriei~~~P~Lt~~Ga~----~~~~~~~~g~YT~~di~eIv~YA~~r-gI~VI 273 (525)
T 3gh5_A 205 IDLASQYKINKFHMHLSDDQGWRIEIKSWPDLIEIGSK----GQVGGGPGGYYTQEQFKDIVSYAAER-YIEVI 273 (525)
T ss_dssp HHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTS----CCTTSSCCCCBCHHHHHHHHHHHHTT-TCEEE
T ss_pred HHHHHHcCCcEEEEEeccCCccccccccchhhhhccCc----cccCCCCCCCcCHHHHHHHHHHHHHc-CCEEE
Confidence 33455677888877777666666665554433211110 00112346689999999999999999 99888
No 289
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=74.42 E-value=52 Score=30.11 Aligned_cols=18 Identities=0% Similarity=-0.354 Sum_probs=0.0
Q ss_pred CCCCCCCCccccCCcccc
Q 012124 22 KIPAQIPGSVSFPSRYLH 39 (470)
Q Consensus 22 ~lPs~R~La~~l~vs~~T 39 (470)
|.|+++++|+..|||++|
T Consensus 3 ~~~ti~diA~~agVS~~T 20 (339)
T 3h5o_A 3 LGVTMHDVAKAAGVSAIT 20 (339)
T ss_dssp ------------------
T ss_pred CCCCHHHHHHHhCCCHHH
Confidence 578999999999999999
No 290
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=73.36 E-value=0.69 Score=43.76 Aligned_cols=36 Identities=3% Similarity=-0.125 Sum_probs=0.0
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhhcCCCcccc
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQ 62 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~ 62 (470)
++++||+.|+||+.| -.+.|+++|+|+.++ .|-+.+
T Consensus 36 t~~eLa~~l~vs~~Tv~r~l~~Le~~Glv~~~~--~gi~LT 74 (345)
T 2o0m_A 36 GRRSLSETMGITERVLRTETDVLKQLNLIEPSK--SGMTLT 74 (345)
T ss_dssp -----------------------------------------
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe--cceEEc
Confidence 799999999999999 999999999998553 454443
No 291
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=72.32 E-value=0.16 Score=37.74 Aligned_cols=35 Identities=3% Similarity=-0.127 Sum_probs=30.0
Q ss_pred CCCCCCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 20 HSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 20 g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
|.+=-++|+||+.++++.+| +.+.|+.+|||..+.
T Consensus 33 g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~~ 70 (91)
T 2dk5_A 33 GNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVK 70 (91)
T ss_dssp CTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 33445799999999999999 999999999998653
No 292
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=71.97 E-value=0.24 Score=40.06 Aligned_cols=31 Identities=3% Similarity=-0.151 Sum_probs=27.8
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.+++|++| ..+.|+++|||+..+
T Consensus 52 ~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 52 LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 7899999999999999 999999999998765
No 293
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=71.23 E-value=9.5 Score=35.34 Aligned_cols=19 Identities=11% Similarity=-0.151 Sum_probs=0.0
Q ss_pred CCCCCCCCCccccCCcccc
Q 012124 21 SKIPAQIPGSVSFPSRYLH 39 (470)
Q Consensus 21 ~~lPs~R~La~~l~vs~~T 39 (470)
.+.|+++++|+..|||++|
T Consensus 4 ~~~~ti~diA~~agVS~~T 22 (333)
T 3jvd_A 4 SAKSSLKEVAELAGVGYAT 22 (333)
T ss_dssp -------------------
T ss_pred CCCCCHHHHHHHHCcCHHH
Confidence 5789999999999999999
No 294
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=71.11 E-value=0.84 Score=39.54 Aligned_cols=32 Identities=13% Similarity=-0.010 Sum_probs=0.0
Q ss_pred CCC-CCCCCccccCCcccc---ccccccccchhhhh
Q 012124 22 KIP-AQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 22 ~lP-s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
.+| ++.+||..+|+||.| +..+|+++|+|+..
T Consensus 162 ~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~~~ 197 (213)
T 1o5l_A 162 TLPVTLEELSRLFGCARPALSRVFQELEREGYIEKH 197 (213)
T ss_dssp ------------------------------------
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEEEc
Confidence 344 688999999999999 99999999999766
No 295
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=70.39 E-value=16 Score=32.15 Aligned_cols=97 Identities=13% Similarity=0.079 Sum_probs=56.7
Q ss_pred CCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc------CC
Q 012124 154 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT------EK 227 (470)
Q Consensus 154 ~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~------~~ 227 (470)
...++||.|+...=..+.+.|.+.|-.|++.+-.-..........+.++..+..|- -|.+.+++.++ .+
T Consensus 6 gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~ 80 (247)
T 3rwb_A 6 GKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAADI-----SDPGSVKALFAEIQALTGG 80 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEECCCCT-----TCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCC-----CCHHHHHHHHHHHHHHCCC
Confidence 34566666665555566677888998888766543333444555577777777643 25566655553 24
Q ss_pred ceEEEEcCCCCCcc--cCCCHHHHHHHHHH
Q 012124 228 SRLLILCSPSNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 228 ~~~i~l~~p~nPtG--~~~s~~~~~~l~~~ 255 (470)
...++.+....+.+ ..++.++++++.+.
T Consensus 81 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 110 (247)
T 3rwb_A 81 IDILVNNASIVPFVAWDDVDLDHWRKIIDV 110 (247)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 55555444333332 24577777777664
No 296
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=70.39 E-value=0.29 Score=43.45 Aligned_cols=35 Identities=11% Similarity=-0.054 Sum_probs=30.7
Q ss_pred CCCccccCCcccc---ccccccccchhhhhhcCCCcccc
Q 012124 27 IPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQ 62 (470)
Q Consensus 27 R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~ 62 (470)
.+||+.+++|++| +.++|+++|||+..+. ++.+++
T Consensus 28 ~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~~-~~v~LT 65 (230)
T 1fx7_A 28 ARIAERLDQSGPTVSQTVSRMERDGLLRVAGD-RHLELT 65 (230)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT-SCEEEC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC-ccEEEC
Confidence 8999999999999 9999999999998866 555554
No 297
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=70.14 E-value=0.19 Score=37.63 Aligned_cols=30 Identities=3% Similarity=-0.190 Sum_probs=27.6
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
+..+||+.+++|++| ..+.|++.|+|+...
T Consensus 40 s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~ 72 (99)
T 3cuo_A 40 SAGELTRITGLSASATSQHLARMRDEGLIDSQR 72 (99)
T ss_dssp EHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 678999999999999 999999999998774
No 298
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=69.51 E-value=0.17 Score=39.00 Aligned_cols=30 Identities=7% Similarity=-0.074 Sum_probs=27.6
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
+..+||+.+|+|++| ..+.|++.|+|+.+.
T Consensus 40 s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~ 72 (108)
T 2kko_A 40 AVEAIATATGMNLTTASANLQALKSGGLVEARR 72 (108)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 678999999999999 899999999998774
No 299
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=69.14 E-value=0.23 Score=43.50 Aligned_cols=38 Identities=3% Similarity=-0.306 Sum_probs=31.7
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccc
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQ 62 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~ 62 (470)
.++.+||+.|+||++| +.++|+++|||+..+. .+.+.+
T Consensus 21 ~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~-~~i~LT 61 (214)
T 3hrs_A 21 ITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKK-AGYLLT 61 (214)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT-TEEEEC
T ss_pred cCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecC-CCeEEC
Confidence 4678999999999999 9999999999988765 444443
No 300
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=69.07 E-value=0.31 Score=39.26 Aligned_cols=31 Identities=0% Similarity=-0.206 Sum_probs=28.3
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.+++|++| +.+.|+++|||+..+
T Consensus 52 ~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~ 85 (142)
T 2bv6_A 52 VNVKKVVTELALDTGTVSPLLKRMEQVDLIKRER 85 (142)
T ss_dssp EEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEE
T ss_pred cCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeec
Confidence 4788999999999999 999999999998765
No 301
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=68.41 E-value=0.37 Score=39.24 Aligned_cols=30 Identities=7% Similarity=-0.108 Sum_probs=26.7
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
++.+||+.++++++| ..+.|+++|||+..+
T Consensus 56 t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~ 88 (150)
T 3fm5_A 56 NQRGVAATMGLDPSQIVGLVDELEERGLVVRTL 88 (150)
T ss_dssp CSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC--
T ss_pred CHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeC
Confidence 789999999999999 999999999998764
No 302
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=68.30 E-value=0.29 Score=36.51 Aligned_cols=28 Identities=4% Similarity=-0.210 Sum_probs=25.7
Q ss_pred CCCCCCccccCCcccc---ccccccccchhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLR 51 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~ 51 (470)
.++.+||+.++++++| ..+.|+++|||.
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~ 61 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEEAKMVE 61 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHTTSEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCcc
Confidence 4688999999999999 999999999993
No 303
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=68.08 E-value=0.37 Score=36.47 Aligned_cols=35 Identities=0% Similarity=-0.020 Sum_probs=29.5
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
+..+||+.+|+|++| ....|++.|+|+.+. .|.++
T Consensus 38 ~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~--~g~~~ 75 (102)
T 3pqk_A 38 SVGELEQQIGIGQPTLSQQLGVLRESGIVETRR--NIKQI 75 (102)
T ss_dssp CHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEEC--SSSCC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE--eCCEE
Confidence 578999999999999 899999999998864 34444
No 304
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=67.91 E-value=0.27 Score=36.92 Aligned_cols=35 Identities=3% Similarity=-0.103 Sum_probs=29.5
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
+..+||+.+|+|++| ..+.|++.|+|+.+. .|.++
T Consensus 38 ~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~--~g~~~ 75 (98)
T 3jth_A 38 SVGELCAKLQLSQSALSQHLAWLRRDGLVTTRK--EAQTV 75 (98)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC--CTTCC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE--eCCEE
Confidence 577999999999999 999999999998774 35444
No 305
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=67.48 E-value=0.25 Score=36.99 Aligned_cols=31 Identities=0% Similarity=-0.079 Sum_probs=27.5
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.+..+||+.++||++| ..+.|++.|+|+...
T Consensus 44 ~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~ 77 (96)
T 1y0u_A 44 RSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG 77 (96)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC
Confidence 4677999999999999 899999999998764
No 306
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Probab=67.37 E-value=12 Score=37.11 Aligned_cols=111 Identities=17% Similarity=0.211 Sum_probs=64.6
Q ss_pred CCCCCCcEEEecChHHHHHHHHHHhc---CC---------CC-----eEEEcCCCCC-------------C------hHH
Q 012124 150 LSYTPDQILVSNGAKQSILQAVLAVC---SP---------GD-----EVIIPAPFWV-------------S------YPE 193 (470)
Q Consensus 150 ~~~~~~~i~it~g~~~al~~~~~~l~---~~---------gd-----~Vlv~~p~y~-------------~------~~~ 193 (470)
+.++++.|.|+.++..++.-.+++|. .. |. ..+.+.|.|+ + +.+
T Consensus 102 L~v~~~~i~I~a~~~~G~~~g~qTL~Ql~~~~~~~~~~~~~~~~lp~~~I~D~Prf~~RG~mLD~aR~f~~~~~ik~~id 181 (512)
T 1jak_A 102 LDSGPAGVTITARKAAGLFHGVQTLRQLLPPAVEKDSAQPGPWLVAGGTIEDTPRYAWRSAMLDVSRHFFGVDEVKRYID 181 (512)
T ss_dssp EEEETTEEEEEESSHHHHHHHHHHHHHHSCGGGGCSSCCCCCCEECCEEEEECCSCSEEEEEEECSSSCCCHHHHHHHHH
T ss_pred EEEeCCEEEEEEcCHHHHHHHHHHHHHHhhhhhcccccccCcccccceEEeecCCCCccceeeccCCCCCCHHHHHHHHH
Confidence 34566788888777666655555542 11 11 2244556554 1 123
Q ss_pred HHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEE
Q 012124 194 MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 265 (470)
Q Consensus 194 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI 265 (470)
.+...+.+...+-+.++.+|.+..+...++..... ........|-.++.+++++|++.|+++ ++-||
T Consensus 182 ~ma~~KlN~lh~HltDdq~wriei~~~P~Lt~~ga----~~~~~~~~~g~YT~~di~eiv~yA~~r-gI~VI 248 (512)
T 1jak_A 182 RVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGG----STEVGGGPGGYYTKAEYKEIVRYAASR-HLEVV 248 (512)
T ss_dssp HHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTT----SCCTTSSCCCCBCHHHHHHHHHHHHHT-TCEEE
T ss_pred HHHHcCCcEEEEEeccCCCceehhhhhHHHHhhcC----ccccCCCCCCCCCHHHHHHHHHHHHHc-CCEEE
Confidence 34456777777776655556665544433221110 001112236789999999999999999 99998
No 307
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=67.16 E-value=12 Score=33.71 Aligned_cols=98 Identities=8% Similarity=0.021 Sum_probs=57.9
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------ 226 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------ 226 (470)
+..-++||.|++..=..+.+.|.+.|-.|++.+-.-.......+..|.+...+..|- -|.+.+++.++.
T Consensus 28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~G 102 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADS-----ANLAELDRLYEKVKAEAG 102 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCT-----TCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecC-----CCHHHHHHHHHHHHHHcC
Confidence 333456666555555566677889998888765433334445666777777777643 255555555432
Q ss_pred CceEEEEcCC-CCCcc--cCCCHHHHHHHHHHH
Q 012124 227 KSRLLILCSP-SNPTG--SVYPKNLLDEIARIV 256 (470)
Q Consensus 227 ~~~~i~l~~p-~nPtG--~~~s~~~~~~l~~~~ 256 (470)
+.. +++++. .++.+ ..++.++|+++.+.-
T Consensus 103 ~iD-iLVNNAG~~~~~~~~~~~~e~w~~~~~vN 134 (273)
T 4fgs_A 103 RID-VLFVNAGGGSMLPLGEVTEEQYDDTFDRN 134 (273)
T ss_dssp CEE-EEEECCCCCCCCCTTSCCHHHHHHHHHHH
T ss_pred CCC-EEEECCCCCCCCChhhccHHHHHHHHHHH
Confidence 344 344444 33333 246888998888753
No 308
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=67.12 E-value=0.28 Score=38.69 Aligned_cols=31 Identities=10% Similarity=-0.039 Sum_probs=27.8
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.+..+||+.+++|++| +.+.|++.|+|....
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeC
Confidence 4789999999999999 999999999997753
No 309
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=66.65 E-value=6 Score=37.01 Aligned_cols=22 Identities=5% Similarity=-0.174 Sum_probs=0.0
Q ss_pred CCCCCCCCCccccCCcccc---ccc
Q 012124 21 SKIPAQIPGSVSFPSRYLH---NFN 42 (470)
Q Consensus 21 ~~lPs~R~La~~l~vs~~T---Ay~ 42 (470)
.+.|+++++|+..|||++| |+.
T Consensus 6 ~~~~ti~dvA~~aGVS~~TVSrvLn 30 (348)
T 3bil_A 6 KFRPTLKDVARQAGVSIATASRALA 30 (348)
T ss_dssp -------------------------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHC
Confidence 4679999999999999999 554
No 310
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=66.51 E-value=0.45 Score=38.62 Aligned_cols=31 Identities=10% Similarity=-0.135 Sum_probs=21.6
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.++++++| ..+.|+++|||+..+
T Consensus 58 ~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 58 IIQKDLAQFFGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp CCHHHHHHC------CHHHHHHHHHHTTSBCCC-
T ss_pred CCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeC
Confidence 3678999999999999 999999999998764
No 311
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=66.46 E-value=18 Score=32.20 Aligned_cols=95 Identities=13% Similarity=0.057 Sum_probs=52.0
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc------C
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT------E 226 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~------~ 226 (470)
....++||.|+...=..+.+.|.+.|..|++.+-.-......+...+...+..++. |.+.++++++ .
T Consensus 26 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~-------~~~~v~~~~~~~~~~~g 98 (260)
T 3gem_A 26 SSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQAGAVALYGDFS-------CETGIMAFIDLLKTQTS 98 (260)
T ss_dssp -CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHHTCEEEECCTT-------SHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhcCCeEEECCCC-------CHHHHHHHHHHHHHhcC
Confidence 34467777666555556667788889777765544334444555667666555542 5555555443 2
Q ss_pred CceEEEEcCCC-CCcccCCCHHHHHHHHH
Q 012124 227 KSRLLILCSPS-NPTGSVYPKNLLDEIAR 254 (470)
Q Consensus 227 ~~~~i~l~~p~-nPtG~~~s~~~~~~l~~ 254 (470)
+...++.+... .+.....+.+++++..+
T Consensus 99 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~ 127 (260)
T 3gem_A 99 SLRAVVHNASEWLAETPGEEADNFTRMFS 127 (260)
T ss_dssp CCSEEEECCCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCEEEECCCccCCCCCCCCHHHHHHHHH
Confidence 45555543332 22223445566665555
No 312
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=65.44 E-value=0.39 Score=45.01 Aligned_cols=40 Identities=5% Similarity=-0.183 Sum_probs=33.2
Q ss_pred CCCCCCCccccCCcccc---ccccccccchh-hhhhcCCCccccc
Q 012124 23 IPAQIPGSVSFPSRYLH---NFNLNNDRRVL-RVMACSGVEEVQV 63 (470)
Q Consensus 23 lPs~R~La~~l~vs~~T---Ay~~L~~~G~i-~s~~g~sG~~V~~ 63 (470)
-.|..+||++|+||+.| -.+.|+++|++ ++..| +||+...
T Consensus 19 ~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i~~~~g-~GY~l~~ 62 (321)
T 1bia_A 19 FHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPG-KGYSLPE 62 (321)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETT-TEEECSS
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEecC-CCcEEee
Confidence 45789999999999999 88899999998 46667 7877643
No 313
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=65.44 E-value=0.33 Score=36.81 Aligned_cols=31 Identities=6% Similarity=-0.133 Sum_probs=28.2
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.+..+||+.+++|++| ..+.|+++|||+...
T Consensus 35 ~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 35 MRVSEIARELDLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 4788999999999999 999999999998764
No 314
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=65.04 E-value=0.34 Score=37.38 Aligned_cols=31 Identities=6% Similarity=0.048 Sum_probs=28.1
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.+.++||+.+++|++| ..+.|++.|+|+...
T Consensus 35 ~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~ 68 (114)
T 2oqg_A 35 QSASSLATRLPVSRQAIAKHLNALQACGLVESVK 68 (114)
T ss_dssp BCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEe
Confidence 4788999999999999 899999999998764
No 315
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=65.01 E-value=20 Score=31.63 Aligned_cols=98 Identities=10% Similarity=0.011 Sum_probs=47.9
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------ 226 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------ 226 (470)
....++||.|+...=..+.+.|.+.|..|++.+-.-.......+..+.++..+..|- -|.+.++++++.
T Consensus 6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g 80 (257)
T 3tpc_A 6 KSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADV-----TNEADATAALAFAKQEFG 80 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC------------CEEEECCT-----TCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEccC-----CCHHHHHHHHHHHHHHcC
Confidence 334566666665555566677888898887765544444444455555555555532 255555555531
Q ss_pred CceEEEEcCCCCCccc------CCCHHHHHHHHHH
Q 012124 227 KSRLLILCSPSNPTGS------VYPKNLLDEIARI 255 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~------~~s~~~~~~l~~~ 255 (470)
+...++.+....+.+. ..+.+++++..+.
T Consensus 81 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~v 115 (257)
T 3tpc_A 81 HVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAV 115 (257)
T ss_dssp CCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCccccccccCCHHHHHHHHHH
Confidence 4555544333222221 3566777766653
No 316
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=64.76 E-value=0.33 Score=38.46 Aligned_cols=31 Identities=0% Similarity=-0.213 Sum_probs=28.0
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.++++++| ..+.|+++|||+..+
T Consensus 54 ~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 87 (127)
T 2frh_A 54 YYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKR 87 (127)
T ss_dssp EEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBC
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC
Confidence 4688999999999999 999999999998754
No 317
>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}
Probab=64.10 E-value=25 Score=31.13 Aligned_cols=99 Identities=12% Similarity=0.112 Sum_probs=57.4
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCC-ChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEE
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWV-SYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLL 231 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~-~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i 231 (470)
+..-++||.|++..=..+.+.|.+.|-.|++.+-.-. .....++..|.+...+..|-. |.+.+++.++...-=+
T Consensus 8 ~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~-----d~~~v~~~~~~g~iDi 82 (247)
T 4hp8_A 8 EGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIAKDGGNASALLIDFA-----DPLAAKDSFTDAGFDI 82 (247)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTT-----STTTTTTSSTTTCCCE
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhCCcEEEEEccCC-----CHHHHHHHHHhCCCCE
Confidence 4444555555554445566678889987776543211 233456678888888877532 3445555554322224
Q ss_pred EEcCC-CCCcc--cCCCHHHHHHHHHHH
Q 012124 232 ILCSP-SNPTG--SVYPKNLLDEIARIV 256 (470)
Q Consensus 232 ~l~~p-~nPtG--~~~s~~~~~~l~~~~ 256 (470)
+++|. -++.+ ..++.++|+++.++=
T Consensus 83 LVNNAGi~~~~~~~~~~~~~w~~~~~vN 110 (247)
T 4hp8_A 83 LVNNAGIIRRADSVEFSELDWDEVMDVN 110 (247)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHHH
T ss_pred EEECCCCCCCCCcccccHHHHHHHHHHH
Confidence 55554 22222 357889999988853
No 318
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=63.45 E-value=0.34 Score=38.86 Aligned_cols=31 Identities=10% Similarity=-0.061 Sum_probs=28.4
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.++++++| +.++|+++|||+..+
T Consensus 51 ~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 51 VLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp CBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeC
Confidence 4789999999999999 999999999998764
No 319
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=63.08 E-value=0.54 Score=38.28 Aligned_cols=30 Identities=0% Similarity=-0.224 Sum_probs=26.9
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
.++.+||+.++++++| ..+.|+++|||+..
T Consensus 52 ~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~ 84 (151)
T 3kp7_A 52 LTVGQITEKQGVNKAAVSRRVKKLLNAELVKLE 84 (151)
T ss_dssp BCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 4678999999999999 99999999999873
No 320
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=62.93 E-value=46 Score=30.11 Aligned_cols=75 Identities=11% Similarity=0.140 Sum_probs=49.2
Q ss_pred CCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEE
Q 012124 186 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 265 (470)
Q Consensus 186 p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI 265 (470)
|.|..+.++.+....+++-+-+.++ .-.+.++++++.+.+.+++.+. | ++.++.+++.+.|+++ ++.++
T Consensus 51 ~vy~sl~el~~~~~~D~viI~tP~~----~~~~~~~ea~~~Gi~~iVi~t~----G--~~~~~~~~l~~~A~~~-gv~li 119 (288)
T 2nu8_A 51 PVFNTVREAVAATGATASVIYVPAP----FCKDSILEAIDAGIKLIITITE----G--IPTLDMLTVKVKLDEA-GVRMI 119 (288)
T ss_dssp EEESSHHHHHHHHCCCEEEECCCGG----GHHHHHHHHHHTTCSEEEECCC----C--CCHHHHHHHHHHHHHH-TCEEE
T ss_pred eccCCHHHHhhcCCCCEEEEecCHH----HHHHHHHHHHHCCCCEEEEECC----C--CCHHHHHHHHHHHHHc-CCEEE
Confidence 4566666666633455554444322 3567778888778887655333 3 2567788999999999 99888
Q ss_pred Eecccc
Q 012124 266 SDEIYE 271 (470)
Q Consensus 266 ~Dd~~~ 271 (470)
-..+.+
T Consensus 120 GPNc~G 125 (288)
T 2nu8_A 120 GPNTPG 125 (288)
T ss_dssp CSSCCE
T ss_pred ecCCcc
Confidence 666544
No 321
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=62.83 E-value=0.35 Score=34.04 Aligned_cols=39 Identities=5% Similarity=-0.062 Sum_probs=31.6
Q ss_pred ccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhc
Q 012124 16 VNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMAC 55 (470)
Q Consensus 16 ~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g 55 (470)
.|.+|...+ -.++|..||+++.+ +.-.|+.+|+|...++
T Consensus 23 ~L~~~~~~T-a~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~ 64 (75)
T 1sfu_A 23 SLNTNDYTT-AISLSNRLKINKKKINQQLYKLQKEDTVKMVPS 64 (75)
T ss_dssp TSCTTCEEC-HHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred hCCCCcchH-HHHHHHHHCCCHHHHHHHHHHHHHCCCEecCCC
Confidence 456666666 67999999999998 8888999999877754
No 322
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=62.61 E-value=0.45 Score=38.30 Aligned_cols=31 Identities=6% Similarity=-0.145 Sum_probs=24.0
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.++++++| ..+.|+++|||+..+
T Consensus 52 ~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~ 85 (142)
T 3ech_A 52 LNLQDLGRQMCRDKALITRKIRELEGRNLVRRER 85 (142)
T ss_dssp CCHHHHHHHHC---CHHHHHHHHHHHTTSEEC--
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeecc
Confidence 3688999999999999 999999999998764
No 323
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=62.28 E-value=22 Score=31.97 Aligned_cols=98 Identities=14% Similarity=0.118 Sum_probs=55.6
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------ 226 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------ 226 (470)
....++||.|+...=..+.+.|.+.|..|++.+-.-.......+..+.++..+..|- -|.+.++++++.
T Consensus 26 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g 100 (277)
T 4dqx_A 26 NQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDV-----SSAKDAESMVEKTTAKWG 100 (277)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCT-----TCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecC-----CCHHHHHHHHHHHHHHcC
Confidence 444566666665555566677888998887765433233344455566666666542 255666555532
Q ss_pred CceEEEEcCCCCCcc--cCCCHHHHHHHHHH
Q 012124 227 KSRLLILCSPSNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG--~~~s~~~~~~l~~~ 255 (470)
+...++.+....+.+ ...+.++++++.+.
T Consensus 101 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~v 131 (277)
T 4dqx_A 101 RVDVLVNNAGFGTTGNVVTIPEETWDRIMSV 131 (277)
T ss_dssp CCCEEEECCCCCCCBCTTTSCHHHHHHHHHH
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHH
Confidence 455554443333222 24677777776653
No 324
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=61.99 E-value=0.3 Score=35.33 Aligned_cols=34 Identities=6% Similarity=-0.119 Sum_probs=30.1
Q ss_pred CCCCCCCCcccc-----CCcccc---ccccccccchhhhhhc
Q 012124 22 KIPAQIPGSVSF-----PSRYLH---NFNLNNDRRVLRVMAC 55 (470)
Q Consensus 22 ~lPs~R~La~~l-----~vs~~T---Ay~~L~~~G~i~s~~g 55 (470)
+-+|..+|++.+ +||++| ..+.|+++|+|....+
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~ 73 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNF 73 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEee
Confidence 457899999999 999999 8899999999987765
No 325
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=61.88 E-value=0.5 Score=38.66 Aligned_cols=32 Identities=6% Similarity=0.022 Sum_probs=27.7
Q ss_pred CCCCCCCCCCccccCCcccc---ccccccccchhhh
Q 012124 20 HSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRV 52 (470)
Q Consensus 20 g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s 52 (470)
+.++ |..+||+.+|+|++| ..++|+++|+|..
T Consensus 21 ~~~~-s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 21 NSRL-TYRELADILNTTRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp CTTC-CHHHHHHHTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred cCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3444 589999999999999 8999999999974
No 326
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=61.70 E-value=0.34 Score=36.98 Aligned_cols=30 Identities=7% Similarity=-0.054 Sum_probs=27.4
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
+..+||+.+|+|++| ..+.|++.|+|..+.
T Consensus 41 ~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~ 73 (106)
T 1r1u_A 41 SVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKR 73 (106)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 678999999999999 889999999998874
No 327
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=61.56 E-value=0.2 Score=36.21 Aligned_cols=32 Identities=3% Similarity=-0.316 Sum_probs=28.0
Q ss_pred CCCCCCccccC----Ccccc---ccccccccchhhhhhc
Q 012124 24 PAQIPGSVSFP----SRYLH---NFNLNNDRRVLRVMAC 55 (470)
Q Consensus 24 Ps~R~La~~l~----vs~~T---Ay~~L~~~G~i~s~~g 55 (470)
+++++|++.++ ++++| ..+.|+++|+|.....
T Consensus 24 ~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~ 62 (82)
T 1p6r_A 24 INTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKE 62 (82)
T ss_dssp EEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEec
Confidence 58899999997 68888 9999999999988753
No 328
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=61.55 E-value=0.53 Score=38.90 Aligned_cols=31 Identities=0% Similarity=-0.324 Sum_probs=28.3
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.++++++| ..+.|+++|||+..+
T Consensus 61 ~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 94 (162)
T 3k0l_A 61 LSNAKLAERSFIKPQSANKILQDLLANGWIEKAP 94 (162)
T ss_dssp CCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecC
Confidence 4688999999999999 999999999998765
No 329
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=61.50 E-value=0.41 Score=38.77 Aligned_cols=31 Identities=3% Similarity=-0.187 Sum_probs=28.3
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.+..+||+.++++++| ..+.|+++|||+..+
T Consensus 42 ~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~ 75 (152)
T 1ku9_A 42 LTISDIMEELKISKGNVSMSLKKLEELGFVRKVW 75 (152)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 5789999999999999 999999999998763
No 330
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=61.40 E-value=0.62 Score=34.87 Aligned_cols=31 Identities=10% Similarity=-0.009 Sum_probs=27.4
Q ss_pred CCCCC----ccccCCcccc---ccccccccchhhhhhc
Q 012124 25 AQIPG----SVSFPSRYLH---NFNLNNDRRVLRVMAC 55 (470)
Q Consensus 25 s~R~L----a~~l~vs~~T---Ay~~L~~~G~i~s~~g 55 (470)
+..+| |+.++++++| ..+.|+++|||+....
T Consensus 24 ~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~ 61 (99)
T 1tbx_A 24 ATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQE 61 (99)
T ss_dssp BHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 56788 9999999999 9999999999987654
No 331
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=61.26 E-value=0.37 Score=36.36 Aligned_cols=31 Identities=6% Similarity=-0.105 Sum_probs=26.8
Q ss_pred CCCCCCccccC----Ccccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFP----SRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~----vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
+++++|++.++ ++++| ..+.|+++|||+...
T Consensus 50 ~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 50 ARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp EEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred CCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 57899999997 46788 999999999998775
No 332
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=61.24 E-value=33 Score=30.50 Aligned_cols=98 Identities=7% Similarity=0.057 Sum_probs=56.3
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------ 226 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------ 226 (470)
....++||.|+...=..+.+.|.+.|.+|++.+-.-.......+..|.++..+..|- -|.+.++++++.
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g 84 (271)
T 3tzq_B 10 ENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVDL-----TNEVSVRALIDFTIDTFG 84 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCT-----TCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCC-----CCHHHHHHHHHHHHHHcC
Confidence 334566666665555566777888998888766555566666666565555555532 255555555532
Q ss_pred CceEEEEcCCCC-C-cc--cCCCHHHHHHHHHH
Q 012124 227 KSRLLILCSPSN-P-TG--SVYPKNLLDEIARI 255 (470)
Q Consensus 227 ~~~~i~l~~p~n-P-tG--~~~s~~~~~~l~~~ 255 (470)
+...++.+.... + .+ ..++.+++++..+.
T Consensus 85 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~v 117 (271)
T 3tzq_B 85 RLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTV 117 (271)
T ss_dssp CCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCccccCCHHHHHHHHHH
Confidence 455554433322 2 11 24577777776653
No 333
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=61.19 E-value=0.54 Score=37.53 Aligned_cols=31 Identities=10% Similarity=-0.141 Sum_probs=27.9
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.+..+||+.++++++| ..+.|+++|||+..+
T Consensus 53 ~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~ 86 (140)
T 2nnn_A 53 CPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSA 86 (140)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 3688999999999999 999999999998753
No 334
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Probab=61.10 E-value=14 Score=36.78 Aligned_cols=107 Identities=14% Similarity=0.150 Sum_probs=63.1
Q ss_pred CCCCCCcEEEecChHHHHHHHHHHhc----CC--CC-----eEEEcCCCCC-------------C------hHHHHHHcC
Q 012124 150 LSYTPDQILVSNGAKQSILQAVLAVC----SP--GD-----EVIIPAPFWV-------------S------YPEMARIAD 199 (470)
Q Consensus 150 ~~~~~~~i~it~g~~~al~~~~~~l~----~~--gd-----~Vlv~~p~y~-------------~------~~~~~~~~g 199 (470)
+.++++.|.|+..+..++.-.+++|. .. |. ..+.+.|.|+ + +.+.+...+
T Consensus 96 L~v~~~~i~I~a~~~~G~~~g~qTl~QL~~~~~~~~~~ip~~~I~D~P~f~~RG~mlD~aR~f~~~~~ik~~id~mA~~K 175 (507)
T 2gjx_A 96 LTINDDQCLLLSETVWGALRGLETFSQLVWKSAEGTFFINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAYNK 175 (507)
T ss_dssp EEESSSCEEEEESSHHHHHHHHHHHHHHEEECTTCCEEEECEEEEECCSCSEEEEEEETTTSCCCHHHHHHHHHHHHHTT
T ss_pred EEEeCCeEEEEECCHHHHHHHHHHHHHHhhhccCCceeeccEEEeecCCcceeeeeeccCCCCCCHHHHHHHHHHHHHhC
Confidence 34567789898777766665565542 11 21 2234556554 1 123345567
Q ss_pred CEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEE
Q 012124 200 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 265 (470)
Q Consensus 200 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI 265 (470)
++....-+.++.+|.+..+.+.++.... ...|.+..++.+++++|++.|+++ ++-||
T Consensus 176 lN~lh~HltDdq~wr~ei~~~P~Lt~~G--------a~~~~~~~YT~~di~eiv~yA~~r-gI~VI 232 (507)
T 2gjx_A 176 LNVFHWHLVDDPSFPYESFTFPELMRKG--------SYNPVTHIYTAQDVKEVIEYARLR-GIRVL 232 (507)
T ss_dssp CCEEEEECCCSSCCCBCCSSCTHHHHHH--------SSCTTTSCBCHHHHHHHHHHHHHT-TCEEE
T ss_pred CceEEEEEecccCeeeeccccchhhhcc--------ccCCCCCCcCHHHHHHHHHHHHHc-CCEEE
Confidence 7777776655555555433222211000 012446679999999999999999 99988
No 335
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=61.02 E-value=0.67 Score=35.74 Aligned_cols=34 Identities=9% Similarity=-0.139 Sum_probs=29.4
Q ss_pred CCCCcccc--CCcccc---ccccccccchhhhhhcCCCccc
Q 012124 26 QIPGSVSF--PSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 26 ~R~La~~l--~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
..+||+.+ ++|+.+ -...|+++|+|+.+ + +|.|.
T Consensus 30 ~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~-~-rg~Y~ 68 (111)
T 3b73_A 30 PKELEDRDEIRISKSSVSRRLKKLADHDLLQPL-A-NGVYV 68 (111)
T ss_dssp HHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC-S-TTCEE
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec-C-CceEE
Confidence 67899999 999999 89999999999986 7 77554
No 336
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=60.48 E-value=59 Score=28.42 Aligned_cols=97 Identities=10% Similarity=0.092 Sum_probs=53.5
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc------C
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT------E 226 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~------~ 226 (470)
....++||.|+...=..+.+.|.+.|..|++.+-.-.......+..+.++..+..|- -|.+.++++++ .
T Consensus 11 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~v~~~~~~~~~~~g 85 (265)
T 2o23_A 11 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADV-----TSEKDVQTALALAKGKFG 85 (265)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCT-----TCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCC-----CCHHHHHHHHHHHHHHCC
Confidence 334566766655544566677888898877655444445555555566666666542 25566655553 1
Q ss_pred CceEEEEcCCCCCccc--------CCCHHHHHHHHH
Q 012124 227 KSRLLILCSPSNPTGS--------VYPKNLLDEIAR 254 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~--------~~s~~~~~~l~~ 254 (470)
+...++.+......+. ..+.+++++..+
T Consensus 86 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (265)
T 2o23_A 86 RVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLD 121 (265)
T ss_dssp CCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHH
T ss_pred CCCEEEECCccCCCCccccccccCCCCHHHHHHHHH
Confidence 4555554433222221 256666666554
No 337
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=60.31 E-value=0.59 Score=43.62 Aligned_cols=29 Identities=3% Similarity=-0.008 Sum_probs=26.3
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
++++||+.||||+.| -.++|+++|+|+-+
T Consensus 23 ~~~ela~~l~vS~~tIrRdL~~l~~~G~v~ir 54 (315)
T 2w48_A 23 TQAQIARELGIYRTTISRLLKRGREQGIVTIA 54 (315)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 578999999999999 89999999999834
No 338
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=60.06 E-value=0.51 Score=38.31 Aligned_cols=29 Identities=0% Similarity=-0.205 Sum_probs=26.5
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRV 52 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s 52 (470)
.|.++||+.+|+|++| ..++|+++|+|..
T Consensus 20 ~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 20 LSMRELGRKIKLSPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 4689999999999999 8999999999974
No 339
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=60.05 E-value=0.48 Score=35.37 Aligned_cols=30 Identities=0% Similarity=-0.127 Sum_probs=26.9
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
+..+||+.+++|++| ..+.|+++|+|+...
T Consensus 32 ~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 32 PFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp EHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 578999999999999 889999999998654
No 340
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=59.77 E-value=0.53 Score=38.02 Aligned_cols=31 Identities=0% Similarity=-0.232 Sum_probs=27.9
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.++++++| +.+.|+++|||+..+
T Consensus 55 ~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~ 88 (147)
T 1z91_A 55 LTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKR 88 (147)
T ss_dssp EEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCB
T ss_pred CCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEecc
Confidence 3678999999999999 999999999998764
No 341
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=59.65 E-value=24 Score=31.54 Aligned_cols=95 Identities=13% Similarity=0.106 Sum_probs=53.8
Q ss_pred CcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------Cc
Q 012124 155 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KS 228 (470)
Q Consensus 155 ~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~ 228 (470)
..++||.|+...=..+.+.|.+.|..|++.+-.-..........+.++..+..|- -|.+.+++++.. +.
T Consensus 6 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~~~~~~~~~~~~~g~i 80 (281)
T 3m1a_A 6 KVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDV-----TDGERIDVVAADVLARYGRV 80 (281)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCT-----TCHHHHHHHHHHHHHHHSCC
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeC-----CCHHHHHHHHHHHHHhCCCC
Confidence 3456665555444556677888998888766554455566666666666666542 255666555431 45
Q ss_pred eEEEEcCCCCCccc--CCCHHHHHHHHH
Q 012124 229 RLLILCSPSNPTGS--VYPKNLLDEIAR 254 (470)
Q Consensus 229 ~~i~l~~p~nPtG~--~~s~~~~~~l~~ 254 (470)
..++.+....+.+. ..+.+++++..+
T Consensus 81 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 108 (281)
T 3m1a_A 81 DVLVNNAGRTQVGAFEETTERELRDLFE 108 (281)
T ss_dssp SEEEECCCCEEECCTTTCCHHHHHHHHH
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHH
Confidence 55554433322222 456666666655
No 342
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=59.56 E-value=31 Score=30.71 Aligned_cols=98 Identities=11% Similarity=0.075 Sum_probs=56.8
Q ss_pred CCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH---HHHHcCCEEEEecCcCCCCCccCHHhHhhhcc---
Q 012124 152 YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE---MARIADATPVILPTRISENFLLDPKVLESKLT--- 225 (470)
Q Consensus 152 ~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~--- 225 (470)
.+..-++||.|++..=..+.+.|.+.|-.|++.+-.-..... -++..|.++..+..|-. |.+.+++.++
T Consensus 7 L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~-----~~~~v~~~~~~~~ 81 (255)
T 4g81_D 7 LTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVT-----DELAIEAAFSKLD 81 (255)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTT-----CHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCC-----CHHHHHHHHHHHH
Confidence 344455666666555556667788999988886543222222 23456888888877532 4555555442
Q ss_pred -C--CceEEEEcCC-CCCcc--cCCCHHHHHHHHHH
Q 012124 226 -E--KSRLLILCSP-SNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 226 -~--~~~~i~l~~p-~nPtG--~~~s~~~~~~l~~~ 255 (470)
+ +.. +++++. .++.+ ..++.++|+++.+.
T Consensus 82 ~~~G~iD-iLVNNAG~~~~~~~~~~~~e~~~~~~~v 116 (255)
T 4g81_D 82 AEGIHVD-ILINNAGIQYRKPMVELELENWQKVIDT 116 (255)
T ss_dssp HTTCCCC-EEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHCCCCc-EEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 2 344 344544 23222 24688888888874
No 343
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=59.52 E-value=0.69 Score=38.42 Aligned_cols=33 Identities=12% Similarity=0.003 Sum_probs=28.3
Q ss_pred CCCCCCCCCCCccccCCcccc---ccccccccchhhh
Q 012124 19 GHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRV 52 (470)
Q Consensus 19 ~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s 52 (470)
...++ |..+||+.+|+|++| -.++|+++|+|..
T Consensus 14 ~~~~~-s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 14 EDSTL-AVADLAKKVGLSTTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp TCSCS-CHHHHHHHHTCCHHHHHHHHHHHHHTTSSCC
T ss_pred HCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeee
Confidence 34455 589999999999999 8999999999864
No 344
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=59.02 E-value=0.53 Score=37.48 Aligned_cols=31 Identities=6% Similarity=-0.145 Sum_probs=28.1
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.+++|++| ..+.|+++|||+..+
T Consensus 44 ~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~ 77 (138)
T 3bpv_A 44 IKQDELATFFHVDKGTIARTLRRLEESGFIEREQ 77 (138)
T ss_dssp CBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeec
Confidence 3688999999999999 999999999998754
No 345
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=59.00 E-value=52 Score=28.82 Aligned_cols=99 Identities=17% Similarity=0.092 Sum_probs=61.1
Q ss_pred cEEEecChHHHHHHHHHHhcCCCCeEE-E--cCC------CC-----CChHHHHHHcCCEEEEecCcCCCCCccCHHhHh
Q 012124 156 QILVSNGAKQSILQAVLAVCSPGDEVI-I--PAP------FW-----VSYPEMARIADATPVILPTRISENFLLDPKVLE 221 (470)
Q Consensus 156 ~i~it~g~~~al~~~~~~l~~~gd~Vl-v--~~p------~y-----~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~ 221 (470)
-+++.||+.....++..+. +.|-.|. + .-| .| ......++..|+....+++..+. .--.+.|.
T Consensus 7 vvvl~SGGkDSs~al~~l~-~~G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~~--~~e~e~l~ 83 (237)
T 3rjz_A 7 VAVLYSGGKDSNYALYWAI-KNRFSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQGEK--EKEVEDLK 83 (237)
T ss_dssp EEEECCSSHHHHHHHHHHH-HTTCEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC--------CHHHHH
T ss_pred EEEEecCcHHHHHHHHHHH-HcCCeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCCCc--hHHHHHHH
Confidence 3567788888887666554 4564442 2 111 11 12345678899998888875321 12356777
Q ss_pred hhccC-CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEE
Q 012124 222 SKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 265 (470)
Q Consensus 222 ~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI 265 (470)
++++. ...+++ +|.+.+..++..+-+.|.+. |+..+
T Consensus 84 ~~l~~~~i~~vv-------~Gdi~s~yqr~r~e~vc~~~-gl~~~ 120 (237)
T 3rjz_A 84 RVLSGLKIQGIV-------AGALASKYQRKRIEKVAKEL-GLEVY 120 (237)
T ss_dssp HHHTTSCCSEEE-------CC---CCSHHHHHHHHHHHT-TCEEE
T ss_pred HHHHhcCCcEEE-------ECCcchHHHHHHHHHHHHHc-CCEEE
Confidence 77754 555666 79999999999999999999 88776
No 346
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=58.66 E-value=58 Score=28.49 Aligned_cols=98 Identities=8% Similarity=-0.023 Sum_probs=54.7
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH---HHHcCCEEEEecCcCCCCCccCHHhHhhhcc----
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM---ARIADATPVILPTRISENFLLDPKVLESKLT---- 225 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---- 225 (470)
....++||.|+...-..+.+.|.+.|..|++.+-.-...... ++..|.++..+..|-. |.+.++++++
T Consensus 6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~ 80 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDAR-----NEDEVTAFLNAADA 80 (252)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCC-----CHHHHHHHHHHHHh
Confidence 334566776665555566677888898887765443333333 3345778877776532 5555555443
Q ss_pred -CCceEEEEcCCCCCcc--cCCCHHHHHHHHHH
Q 012124 226 -EKSRLLILCSPSNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 226 -~~~~~i~l~~p~nPtG--~~~s~~~~~~l~~~ 255 (470)
.+...++.+....+.+ ...+.+++++..+.
T Consensus 81 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 113 (252)
T 3h7a_A 81 HAPLEVTIFNVGANVNFPILETTDRVFRKVWEM 113 (252)
T ss_dssp HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred hCCceEEEECCCcCCCCCcccCCHHHHHHHHHH
Confidence 2444444333332222 24577777766653
No 347
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=58.58 E-value=0.59 Score=40.13 Aligned_cols=30 Identities=3% Similarity=-0.136 Sum_probs=27.1
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
.++.+||..+|+||.| +..+|+++|+|+..
T Consensus 165 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 197 (207)
T 2oz6_A 165 ITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVK 197 (207)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 3577999999999999 99999999999765
No 348
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=58.50 E-value=0.61 Score=38.07 Aligned_cols=30 Identities=3% Similarity=-0.183 Sum_probs=26.9
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
.|..+||+.+|+|++| ..++|+++|+|...
T Consensus 18 ~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 18 YSLDEIAREIRIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp SCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 3589999999999999 99999999999753
No 349
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=58.40 E-value=0.49 Score=38.13 Aligned_cols=31 Identities=16% Similarity=0.044 Sum_probs=28.2
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.++++++| +.+.|+++|||+..+
T Consensus 53 ~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 53 PTQRELAQSVGVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp CBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecC
Confidence 4789999999999999 999999999998764
No 350
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=58.39 E-value=13 Score=33.63 Aligned_cols=76 Identities=11% Similarity=0.034 Sum_probs=45.2
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC--CceE
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE--KSRL 230 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~--~~~~ 230 (470)
....++||.|+...=..+.+.|.+.|..|++.+-.-.......+..+.++..+..|- -|.+.++++++. +...
T Consensus 15 ~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl-----~d~~~v~~~~~~~~~iD~ 89 (291)
T 3rd5_A 15 AQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDL-----QDLSSVRRFADGVSGADV 89 (291)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEECCT-----TCHHHHHHHHHTCCCEEE
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCC-----CCHHHHHHHHHhcCCCCE
Confidence 334567776665555566677888898887765432233344455566777777643 266666666643 4454
Q ss_pred EEE
Q 012124 231 LIL 233 (470)
Q Consensus 231 i~l 233 (470)
++.
T Consensus 90 lv~ 92 (291)
T 3rd5_A 90 LIN 92 (291)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 351
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=58.27 E-value=0.78 Score=40.01 Aligned_cols=29 Identities=7% Similarity=-0.060 Sum_probs=26.9
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
++.+||..+|+||.| +..+|+++|+|...
T Consensus 180 t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 211 (227)
T 3dkw_A 180 AKQLVAGHLSIQPETFSRIMHRLGDEGIIHLD 211 (227)
T ss_dssp CTHHHHHHTTSCHHHHHHHHHHHHHHTSEEES
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHCCcEEec
Confidence 577999999999999 99999999999765
No 352
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=58.18 E-value=24 Score=31.47 Aligned_cols=97 Identities=13% Similarity=0.063 Sum_probs=53.2
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc------C
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT------E 226 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~------~ 226 (470)
....++||.|+...=..+.+.|.+.|..|++.+-.-.......+..|.++..+..|- -|.+.++++++ .
T Consensus 26 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g 100 (266)
T 3grp_A 26 TGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANL-----SDRKSIKQLAEVAEREME 100 (266)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCT-----TSHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEeec-----CCHHHHHHHHHHHHHHcC
Confidence 344566666655544566677888898887765433333445555677777776643 25566655553 2
Q ss_pred CceEEEEcCCCCCcc--cCCCHHHHHHHHH
Q 012124 227 KSRLLILCSPSNPTG--SVYPKNLLDEIAR 254 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG--~~~s~~~~~~l~~ 254 (470)
+...++.+....+.+ ..++.+++++..+
T Consensus 101 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~ 130 (266)
T 3grp_A 101 GIDILVNNAGITRDGLFVRMQDQDWDDVLA 130 (266)
T ss_dssp SCCEEEECCCCC-----CCCHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 455554433322222 2345566666555
No 353
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=57.71 E-value=0.68 Score=37.25 Aligned_cols=31 Identities=0% Similarity=-0.164 Sum_probs=27.9
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.+..+||+.+++|++| +.+.|+++|||+..+
T Consensus 51 ~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 84 (146)
T 2gxg_A 51 KTMAYLANRYFVTQSAITASVDKLEEMGLVVRVR 84 (146)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeec
Confidence 3688999999999999 999999999998764
No 354
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=57.62 E-value=0.71 Score=37.91 Aligned_cols=31 Identities=6% Similarity=-0.273 Sum_probs=27.6
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.++++++| ..+.|+++|||+..+
T Consensus 63 ~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~ 96 (160)
T 3boq_A 63 LSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAM 96 (160)
T ss_dssp EEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC-
T ss_pred CCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeec
Confidence 4688999999999999 999999999998754
No 355
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=57.51 E-value=0.69 Score=37.30 Aligned_cols=31 Identities=6% Similarity=-0.172 Sum_probs=27.8
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.+++|++| +.+.|+++|||+..+
T Consensus 51 ~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~ 84 (147)
T 2hr3_A 51 VTPSELAAAERMRSSNLAALLRELERGGLIVRHA 84 (147)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCC
Confidence 3688999999999999 999999999997653
No 356
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=57.46 E-value=25 Score=30.99 Aligned_cols=97 Identities=8% Similarity=0.020 Sum_probs=54.3
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------ 226 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------ 226 (470)
....++||.|+...=..+.+.|.+.|..|++.+-.-.......+..+.++..+..|- -|.+.+++.++.
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~v~~~~~~~~~~~g 81 (259)
T 4e6p_A 7 EGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDV-----TRQDSIDAAIAATVEHAG 81 (259)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCT-----TCHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeC-----CCHHHHHHHHHHHHHHcC
Confidence 334567776665555566777888898887765433333444455555566666542 255655555431
Q ss_pred CceEEEEcCCCCCcc--cCCCHHHHHHHHH
Q 012124 227 KSRLLILCSPSNPTG--SVYPKNLLDEIAR 254 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG--~~~s~~~~~~l~~ 254 (470)
+...++.+....+.+ ..++.+++++..+
T Consensus 82 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 111 (259)
T 4e6p_A 82 GLDILVNNAALFDLAPIVEITRESYEKLFA 111 (259)
T ss_dssp SCCEEEECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHH
Confidence 455555443332222 3457777776665
No 357
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=57.33 E-value=0.47 Score=38.13 Aligned_cols=31 Identities=0% Similarity=-0.340 Sum_probs=28.0
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.++++++| ..+.|+++|||+..+
T Consensus 51 ~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 51 LNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred cCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecC
Confidence 4678999999999999 999999999998764
No 358
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=56.98 E-value=12 Score=34.63 Aligned_cols=18 Identities=0% Similarity=-0.143 Sum_probs=0.0
Q ss_pred CCCCCCCCccccCCcccc
Q 012124 22 KIPAQIPGSVSFPSRYLH 39 (470)
Q Consensus 22 ~lPs~R~La~~l~vs~~T 39 (470)
++|+++++|+..|||++|
T Consensus 2 ~~~ti~diA~~agVS~~T 19 (338)
T 3dbi_A 2 SLTTMLEVAKRAGVSKAT 19 (338)
T ss_dssp ------------------
T ss_pred CCCCHHHHHHHHCcCHHH
Confidence 589999999999999999
No 359
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=56.94 E-value=0.88 Score=42.84 Aligned_cols=32 Identities=0% Similarity=-0.332 Sum_probs=29.2
Q ss_pred CCCCCCcccc--CCcccc---ccccccccchhhhhhc
Q 012124 24 PAQIPGSVSF--PSRYLH---NFNLNNDRRVLRVMAC 55 (470)
Q Consensus 24 Ps~R~La~~l--~vs~~T---Ay~~L~~~G~i~s~~g 55 (470)
.++|+||+.+ +||..| -...|+++|+|+..+|
T Consensus 37 V~s~~La~~~~l~VS~aTIRrDL~~LE~~GlL~r~Hg 73 (338)
T 1stz_A 37 VSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQPHT 73 (338)
T ss_dssp BCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEECCSS
T ss_pred ccHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEccC
Confidence 4689999998 999999 9999999999998877
No 360
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=56.90 E-value=0.52 Score=38.34 Aligned_cols=30 Identities=0% Similarity=-0.248 Sum_probs=26.6
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
++.+||+.++++++| ..+.|+++|||+..+
T Consensus 57 ~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 89 (149)
T 4hbl_A 57 TLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRER 89 (149)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC--
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCC
Confidence 688999999999999 999999999998764
No 361
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=56.86 E-value=0.61 Score=37.73 Aligned_cols=30 Identities=7% Similarity=-0.074 Sum_probs=26.1
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
++.+||+.++++++| ..+.|+++|||+..+
T Consensus 56 t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~ 88 (148)
T 3nrv_A 56 SVQKISDILGLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeec
Confidence 577899999999999 999999999998764
No 362
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=56.59 E-value=0.85 Score=36.27 Aligned_cols=31 Identities=0% Similarity=-0.279 Sum_probs=27.9
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.+++|++| ..+.|+++|||+..+
T Consensus 48 ~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~ 81 (139)
T 3bja_A 48 VSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEK 81 (139)
T ss_dssp EEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEE
T ss_pred cCHHHHHHHHCCChhHHHHHHHHHHHCCCeeecc
Confidence 4688999999999999 999999999998753
No 363
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=56.52 E-value=0.59 Score=39.90 Aligned_cols=39 Identities=0% Similarity=-0.243 Sum_probs=31.4
Q ss_pred CCCCCCccccCCcccc---ccccccccch-hhhhhcCCCcccccc
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRV-LRVMACSGVEEVQVD 64 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~-i~s~~g~sG~~V~~~ 64 (470)
-|..+||+.|+||+.| =.+.|++.|+ |.+. + .||++...
T Consensus 37 ~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~~-~-~Gy~l~~~ 79 (187)
T 1j5y_A 37 VSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVAT-P-RGYVLAGG 79 (187)
T ss_dssp BCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEE-T-TEEECCTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE-C-CEEEECCc
Confidence 4688999999999999 5668889999 8774 5 68777553
No 364
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=56.46 E-value=0.5 Score=38.04 Aligned_cols=30 Identities=3% Similarity=-0.167 Sum_probs=27.4
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
++.+||+.++++++| ..+.|+++|||+..+
T Consensus 53 t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 53 SQKEIALWTKKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccC
Confidence 678999999999999 999999999998764
No 365
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=56.40 E-value=0.66 Score=37.09 Aligned_cols=31 Identities=3% Similarity=-0.237 Sum_probs=27.9
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.+++|++| ..+.|+++|||+..+
T Consensus 51 ~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 51 MESYQLANQACILRPSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp EEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 4688999999999999 999999999998763
No 366
>3rcn_A Beta-N-acetylhexosaminidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta half sandwich; HET: MSE; 2.51A {Arthrobacter aurescens}
Probab=56.24 E-value=13 Score=37.32 Aligned_cols=115 Identities=15% Similarity=0.219 Sum_probs=70.3
Q ss_pred CCCCCCCcEEEecChHHHHHHHHHHhc---C----------CCC------eEEEcCCCCC-------------C------
Q 012124 149 GLSYTPDQILVSNGAKQSILQAVLAVC---S----------PGD------EVIIPAPFWV-------------S------ 190 (470)
Q Consensus 149 g~~~~~~~i~it~g~~~al~~~~~~l~---~----------~gd------~Vlv~~p~y~-------------~------ 190 (470)
.+.+ ++.|.|+.++..++.-.+++|. . .|. ..+.+.|.|+ +
T Consensus 81 ~L~v-~~~i~I~a~~~~G~f~glqTL~QLl~~~~~~~~~~~~~~~~~ip~~~I~D~Prf~~RG~mLDvsRhf~~~~~ik~ 159 (543)
T 3rcn_A 81 RLEV-SDAVVISAGGAAGAFYGAQTLLQLLGPAALRQAPVVAVEGWSVPRVSVEDKPRFGYRGTMLDVARHFMPKDNVLR 159 (543)
T ss_dssp EEEE-SSSEEEEESSHHHHHHHHHHHHHHHCGGGGSSSCCSCCSCEEEEEEEEEECCSCSEEEEEEETTTSCCCHHHHHH
T ss_pred EEEE-CCeEEEEECCHHHHHHHHHHHHHHHhhhcccccccccCcceeccCEEEEecCCCCccccccccCCCccCHHHHHH
Confidence 3446 7789998877766655555542 1 121 1244567665 1
Q ss_pred hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-----CceEEEE-cC--CCCCcccCCCHHHHHHHHHHHHhCCCE
Q 012124 191 YPEMARIADATPVILPTRISENFLLDPKVLESKLTE-----KSRLLIL-CS--PSNPTGSVYPKNLLDEIARIVAKHPRL 262 (470)
Q Consensus 191 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-----~~~~i~l-~~--p~nPtG~~~s~~~~~~l~~~~~~~~~~ 262 (470)
+.+.+...+.++...-+.++.+|.+.++.+.++-.. .+..-.. +. -..|.|-.++.+++++|++.|+++ ++
T Consensus 160 ~ID~MA~~KlN~lH~HltDdqgwriei~~yP~Lt~~Ga~r~~t~~g~~~~~~~~~~~~~g~YT~~di~eIv~YA~~r-gI 238 (543)
T 3rcn_A 160 FIEVMAMHKLNVLHLHLTDDQGWRMQINRYPKLTETGAWRRESSLGSWRAGVFDGRPHGGFYTQDDLREIVAFAADR-HI 238 (543)
T ss_dssp HHHHHHHTTCCEEEEECEETTEECBCCSSCTHHHHTTTEESCCBSSCGGGCCBCCCCEECCBCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHcCCcEEEeecccccCcchhcccchhhhhhccccccccccccccccccCCccCCCcCHHHHHHHHHHHHHc-CC
Confidence 234456688888888887666676665554433211 1100000 00 123567889999999999999999 99
Q ss_pred EEE
Q 012124 263 LVL 265 (470)
Q Consensus 263 ~iI 265 (470)
-||
T Consensus 239 ~VI 241 (543)
T 3rcn_A 239 TVI 241 (543)
T ss_dssp EEE
T ss_pred EEe
Confidence 888
No 367
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=56.16 E-value=0.58 Score=37.37 Aligned_cols=31 Identities=3% Similarity=-0.123 Sum_probs=27.9
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.++++++| ..+.|+++|||+..+
T Consensus 48 ~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~ 81 (139)
T 3eco_A 48 LTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYV 81 (139)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecC
Confidence 3678999999999999 999999999998764
No 368
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=56.16 E-value=0.65 Score=37.13 Aligned_cols=31 Identities=6% Similarity=-0.051 Sum_probs=28.1
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.+..+||+.+++|++| ..+.|+++|||+..+
T Consensus 46 ~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~ 79 (142)
T 3bdd_A 46 LHQLALQERLQIDRAAVTRHLKLLEESGYIIRKR 79 (142)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC
Confidence 4788999999999999 999999999998764
No 369
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=56.05 E-value=0.59 Score=38.26 Aligned_cols=30 Identities=7% Similarity=0.053 Sum_probs=27.1
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
++.+||+.++|+++| ..+.|+++|||+..+
T Consensus 48 ~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~ 80 (151)
T 4aik_A 48 SQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHT 80 (151)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeec
Confidence 457999999999999 999999999998764
No 370
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=55.99 E-value=37 Score=29.63 Aligned_cols=94 Identities=15% Similarity=0.155 Sum_probs=49.1
Q ss_pred CcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------Cc
Q 012124 155 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KS 228 (470)
Q Consensus 155 ~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~ 228 (470)
..++||.|+...=..+.+.|.+.|..|++.+-.-.......+..|...+..++ -|.+.++++++. +.
T Consensus 6 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~-------~~~~~~~~~~~~~~~~~g~i 78 (245)
T 1uls_A 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDV-------ADPASVERGFAEALAHLGRL 78 (245)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCT-------TCHHHHHHHHHHHHHHHSSC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCEEEEecC-------CCHHHHHHHHHHHHHHcCCC
Confidence 35666665555445566777888988876543211222333344655544443 255666555432 45
Q ss_pred eEEEEcCCCCCcc--cCCCHHHHHHHHHH
Q 012124 229 RLLILCSPSNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 229 ~~i~l~~p~nPtG--~~~s~~~~~~l~~~ 255 (470)
..++-+....+.+ ..++.+++++..+.
T Consensus 79 d~lvn~Ag~~~~~~~~~~~~~~~~~~~~~ 107 (245)
T 1uls_A 79 DGVVHYAGITRDNFHWKMPLEDWELVLRV 107 (245)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 5555433322222 23567777766654
No 371
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=55.66 E-value=0.6 Score=37.66 Aligned_cols=31 Identities=3% Similarity=-0.153 Sum_probs=28.0
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.++++++| ..+.|+++|||+..+
T Consensus 46 ~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 79 (145)
T 3g3z_A 46 RTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQE 79 (145)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecc
Confidence 5788999999999999 999999999998653
No 372
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=55.64 E-value=0.63 Score=38.38 Aligned_cols=30 Identities=3% Similarity=-0.299 Sum_probs=27.5
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
++.+||+.++++++| ..+.|+++|||+..+
T Consensus 69 t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 69 TVGQLATLGVMEQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp EHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 678999999999999 999999999998764
No 373
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=55.52 E-value=0.65 Score=38.64 Aligned_cols=31 Identities=16% Similarity=0.025 Sum_probs=25.0
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
-++.+||+.++++++| ..+.|+++|||+..+
T Consensus 63 ~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 96 (168)
T 3u2r_A 63 MATLQIADRLISRAPDITRLIDRLDDRGLVLRTR 96 (168)
T ss_dssp EEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEE
T ss_pred cCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecC
Confidence 3688999999999999 999999999998764
No 374
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=55.38 E-value=20 Score=32.28 Aligned_cols=96 Identities=9% Similarity=-0.023 Sum_probs=51.7
Q ss_pred CcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc------CCc
Q 012124 155 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT------EKS 228 (470)
Q Consensus 155 ~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~------~~~ 228 (470)
..++||.|+...=..+.+.|.+.|..|++.+-.-.......+..+.++..+..|- -|.+.+++.++ .+.
T Consensus 30 k~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~i 104 (277)
T 3gvc_A 30 KVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDV-----SDEQQIIAMVDACVAAFGGV 104 (277)
T ss_dssp CEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCT-----TCHHHHHHHHHHHHHHHSSC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecC-----CCHHHHHHHHHHHHHHcCCC
Confidence 3456665555444456677888898887765432233344444565555555542 25555555443 145
Q ss_pred eEEEEcCCCCCcc--cCCCHHHHHHHHHH
Q 012124 229 RLLILCSPSNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 229 ~~i~l~~p~nPtG--~~~s~~~~~~l~~~ 255 (470)
..++-+....+.+ ...+.++++++.+.
T Consensus 105 D~lvnnAg~~~~~~~~~~~~~~~~~~~~v 133 (277)
T 3gvc_A 105 DKLVANAGVVHLASLIDTTVEDFDRVIAI 133 (277)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 5555443322222 24577777776653
No 375
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=55.10 E-value=0.67 Score=37.95 Aligned_cols=31 Identities=6% Similarity=-0.048 Sum_probs=27.3
Q ss_pred CCCCCCCCCccccCCcccc---ccccccccchhhh
Q 012124 21 SKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRV 52 (470)
Q Consensus 21 ~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s 52 (470)
.++ |..+||+.+|+|++| -.++|+++|+|..
T Consensus 21 ~~~-s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 21 ART-AYAELAKQFGVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp TTS-CHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCC-CHHHHHHHHCcCHHHHHHHHHHHHHcCCcce
Confidence 344 589999999999999 8999999999975
No 376
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=55.01 E-value=49 Score=28.85 Aligned_cols=96 Identities=10% Similarity=0.032 Sum_probs=51.4
Q ss_pred CcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCC-CChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc------CC
Q 012124 155 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFW-VSYPEMARIADATPVILPTRISENFLLDPKVLESKLT------EK 227 (470)
Q Consensus 155 ~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y-~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~------~~ 227 (470)
..++||.|+...=..+.+.|.+.|..|++.+-.- ......++..|.++..+..|- -|.+.++++++ .+
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~ 82 (249)
T 2ew8_A 8 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDV-----SQPGDVEAFGKQVISTFGR 82 (249)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCT-----TCHHHHHHHHHHHHHHHSC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeec-----CCHHHHHHHHHHHHHHcCC
Confidence 4566666655555566677888898777654322 122223444566666666542 25555555542 24
Q ss_pred ceEEEEcCCCCCcc--cCCCHHHHHHHHHH
Q 012124 228 SRLLILCSPSNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 228 ~~~i~l~~p~nPtG--~~~s~~~~~~l~~~ 255 (470)
...++.+....+.+ ...+.++++++.+.
T Consensus 83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 112 (249)
T 2ew8_A 83 CDILVNNAGIYPLIPFDELTFEQWKKTFEI 112 (249)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 55555443322222 23566777666653
No 377
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=54.88 E-value=0.7 Score=38.03 Aligned_cols=30 Identities=10% Similarity=-0.090 Sum_probs=26.1
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
++.+||+.++++++| +.+.|+++|||+...
T Consensus 65 t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 65 SASEVSDRTAMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeec
Confidence 577899999999999 999999999998754
No 378
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=54.69 E-value=32 Score=33.75 Aligned_cols=109 Identities=12% Similarity=0.146 Sum_probs=64.6
Q ss_pred cCCCCCChHHHHHHc-CCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCE
Q 012124 184 PAPFWVSYPEMARIA-DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 262 (470)
Q Consensus 184 ~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~ 262 (470)
.-|.|..|..+.+.- ..+..-+-+... .-++.++++.+.+++ +++.+-+.| .+..+++.+.|+++ |+
T Consensus 20 ~~Pv~~~~~~~~~~p~~~DlavI~vPa~----~v~~~v~e~~~~Gv~-~viis~Gf~------~~~~~~l~~~A~~~-g~ 87 (480)
T 3dmy_A 20 ALTQVRRWDSACQKLPDANLALISVAGE----YAAELANQALDRNLN-VMMFSDNVT------LEDEIQLKTRAREK-GL 87 (480)
T ss_dssp CCEEESSHHHHHHHSTTCCEEEECSCHH----HHHHHHHHHHHTTCE-EEECCCCCC------HHHHHHHHHHHHHT-TC
T ss_pred CCcccchHHHHHhcCCCCCEEEEecCHH----HHHHHHHHHHhcCCC-EEEECCCCC------HHHHHHHHHHHHHc-CC
Confidence 456777888777663 444444443221 356778888888888 444443333 66678999999999 99
Q ss_pred EEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHH
Q 012124 263 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 324 (470)
Q Consensus 263 ~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~ 324 (470)
.||==++ . ...... .-.||+..+. +| ++|++.-+..+...+.
T Consensus 88 rliGPNc-G-----------~~~~~~------~~~~f~~~~~-~G-~vaivSqSGal~~~i~ 129 (480)
T 3dmy_A 88 LVMGPDC-G-----------TSMIAG------TPLAFANVMP-EG-NIGVIGASGTGIQELC 129 (480)
T ss_dssp CEECSSC-C-----------EEEETT------EEEESCCCCC-EE-EEEEEESCSHHHHHHH
T ss_pred EEEecCc-c-----------ccccCC------ccccccCCCC-CC-CEEEEeccHHHHHHHH
Confidence 9983222 1 111111 1234555553 55 6888876665554443
No 379
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=54.59 E-value=0.87 Score=38.78 Aligned_cols=29 Identities=3% Similarity=-0.201 Sum_probs=26.8
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
++.+||..+|+||.| +..+|+++|+|+..
T Consensus 141 t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 172 (195)
T 3b02_A 141 SHEEIADATASIRESVSKVLADLRREGLIATA 172 (195)
T ss_dssp CHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 577999999999999 99999999999765
No 380
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=54.59 E-value=0.97 Score=38.10 Aligned_cols=30 Identities=3% Similarity=-0.219 Sum_probs=27.4
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
++.+||+.++++++| ..+.|+++|||+...
T Consensus 88 t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 120 (181)
T 2fbk_A 88 RPTELSALAAISGPSTSNRIVRLLEKGLIERRE 120 (181)
T ss_dssp CHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecC
Confidence 688999999999999 999999999998753
No 381
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=54.45 E-value=0.62 Score=35.94 Aligned_cols=30 Identities=0% Similarity=-0.220 Sum_probs=27.4
Q ss_pred CCCCCcccc-CCcccc---ccccccccchhhhhh
Q 012124 25 AQIPGSVSF-PSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 25 s~R~La~~l-~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
+..+||+.+ ++|++| ..++|+++|||+..+
T Consensus 37 ~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~ 70 (112)
T 1z7u_A 37 RNGELMRALDGITQRVLTDRLREMEKDGLVHRES 70 (112)
T ss_dssp CHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEee
Confidence 577999999 999999 999999999998765
No 382
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=54.43 E-value=0.73 Score=37.60 Aligned_cols=29 Identities=7% Similarity=-0.143 Sum_probs=26.2
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRV 52 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s 52 (470)
.|..+||+.+|+|++| ..++|+++|+|..
T Consensus 22 ~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 22 ATLSELATRAGLSVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3589999999999999 8999999999964
No 383
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=54.13 E-value=0.56 Score=38.18 Aligned_cols=30 Identities=0% Similarity=-0.229 Sum_probs=27.4
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
++.+||+.++++++| ..+.|+++|||+..+
T Consensus 53 t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~ 85 (147)
T 4b8x_A 53 PMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRP 85 (147)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEee
Confidence 477999999999999 999999999998765
No 384
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=54.12 E-value=0.63 Score=38.74 Aligned_cols=31 Identities=10% Similarity=0.074 Sum_probs=27.7
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.++++++| ..+.|+++|||+..+
T Consensus 69 ~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 69 QSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeC
Confidence 5688999999999999 999999999998764
No 385
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=53.69 E-value=0.59 Score=38.45 Aligned_cols=30 Identities=10% Similarity=-0.244 Sum_probs=27.6
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
++.+||+.++++++| ..+.|+++|||+..+
T Consensus 66 t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 98 (159)
T 3s2w_A 66 NQESLSDYLKIDKGTTARAIQKLVDEGYVFRQR 98 (159)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 678999999999999 999999999998764
No 386
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=53.55 E-value=27 Score=30.81 Aligned_cols=98 Identities=13% Similarity=0.070 Sum_probs=54.3
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc------C
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT------E 226 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~------~ 226 (470)
....++||.|+...=..+.+.|.+.|..|++.+-.-.......+..|.++..+..|- -|.+.+++.++ .
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g 81 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDI-----ADLNEIAVLGAAAGQTLG 81 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCT-----TCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccC-----CCHHHHHHHHHHHHHHhC
Confidence 344667776666555566777888898887765433333344445566666666543 25555554442 1
Q ss_pred CceEEEEcCCCCCcc--cCCCHHHHHHHHHH
Q 012124 227 KSRLLILCSPSNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG--~~~s~~~~~~l~~~ 255 (470)
+...++.+....+.+ ..++.+++++..+.
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 112 (255)
T 4eso_A 82 AIDLLHINAGVSELEPFDQVSEASYDRQFAV 112 (255)
T ss_dssp SEEEEEECCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 444444333222222 23477777776664
No 387
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=53.49 E-value=0.7 Score=37.53 Aligned_cols=30 Identities=0% Similarity=-0.131 Sum_probs=27.6
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
++.+||+.++++++| +.+.|+++|||+...
T Consensus 56 t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~ 88 (152)
T 3bj6_A 56 TAPQLGAALQMKRQYISRILQEVQRAGLIERRT 88 (152)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecC
Confidence 688999999999999 999999999998764
No 388
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=53.43 E-value=19 Score=31.14 Aligned_cols=95 Identities=5% Similarity=-0.008 Sum_probs=51.6
Q ss_pred cEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc---CCceEEE
Q 012124 156 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT---EKSRLLI 232 (470)
Q Consensus 156 ~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~i~ 232 (470)
.++||.|+...=..+.+.|.+.|..|++.+-.-.......+..+.++..+..|- -|.+.+++.++ +....++
T Consensus 3 ~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~v~~~~~~~~~~~d~lv 77 (230)
T 3guy_A 3 LIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDL-----ASHQEVEQLFEQLDSIPSTVV 77 (230)
T ss_dssp CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEECCT-----TCHHHHHHHHHSCSSCCSEEE
T ss_pred EEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhccCeEeecC-----CCHHHHHHHHHHHhhcCCEEE
Confidence 367776666555566677888897777765433333344444455555555432 25566655553 2334444
Q ss_pred EcCCCCCcc--cCCCHHHHHHHHHH
Q 012124 233 LCSPSNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 233 l~~p~nPtG--~~~s~~~~~~l~~~ 255 (470)
.+....+.+ ..++.+++++..+.
T Consensus 78 ~~Ag~~~~~~~~~~~~~~~~~~~~~ 102 (230)
T 3guy_A 78 HSAGSGYFGLLQEQDPEQIQTLIEN 102 (230)
T ss_dssp ECCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred EeCCcCCCCccccCCHHHHHHHHHH
Confidence 333332222 24577777776654
No 389
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=53.35 E-value=0.8 Score=38.43 Aligned_cols=30 Identities=10% Similarity=0.027 Sum_probs=26.8
Q ss_pred CCCCCCCCccccCCcccc---ccccccccchhhh
Q 012124 22 KIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRV 52 (470)
Q Consensus 22 ~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s 52 (470)
++ |..+||+.+|+|++| -.++|+++|+|..
T Consensus 31 ~~-s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 31 RL-TISELSEQLKKPESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp TC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 44 589999999999999 8999999999964
No 390
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=53.33 E-value=0.8 Score=37.96 Aligned_cols=29 Identities=10% Similarity=0.023 Sum_probs=26.6
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
|.++||+.+|+|++| -.++|+++|+|...
T Consensus 26 s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 26 TNVELSERVALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEeee
Confidence 699999999999999 89999999999753
No 391
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=53.30 E-value=0.79 Score=37.48 Aligned_cols=29 Identities=7% Similarity=-0.178 Sum_probs=26.3
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRV 52 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s 52 (470)
.|..+||+.+|+|++| -.++|+++|+|..
T Consensus 22 ~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 22 APLREISKITGLAESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 3588999999999999 8999999999975
No 392
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Probab=53.28 E-value=25 Score=37.25 Aligned_cols=114 Identities=10% Similarity=0.066 Sum_probs=68.7
Q ss_pred CCCCCCcEEEecChHHHHHHHHHHh---cCCCC------eEEEcCCCCC-------------C------hHHHHHHcCCE
Q 012124 150 LSYTPDQILVSNGAKQSILQAVLAV---CSPGD------EVIIPAPFWV-------------S------YPEMARIADAT 201 (470)
Q Consensus 150 ~~~~~~~i~it~g~~~al~~~~~~l---~~~gd------~Vlv~~p~y~-------------~------~~~~~~~~g~~ 201 (470)
+.++++.|.|+..+..++.-.+++| +..++ ..+.+.|.|+ + +.+.+...+++
T Consensus 264 L~v~~~~i~I~a~~~~G~fyglqTL~QLl~~~~~~~ip~~~I~D~Prf~~RG~mLDvsR~f~~~~~ik~~Id~mA~~KlN 343 (858)
T 1c7s_A 264 LKIGKKEAQVIGFDQAGVFYGLQSILSLVPSDGSGKIATLDASDAPRFPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLN 343 (858)
T ss_dssp EEECSSCEEEEESSHHHHHHHHHHHHHHSCTTSCCEEEEEEEEECCSCSEEEEEEECSSSCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEeCCeEEEEEecccceeHHHHHHHHHhhhcCCccccceEEEeCCCcceeeeeecCCCCCCCHHHHHHHHHHHHHhCCc
Confidence 3356678888877766665555554 22322 2344567665 1 23345567888
Q ss_pred EEEecCcCCCCCccCHHhHhhhccCCc---------eEEEEcCC-C--CCcccCCCHHHHHHHHHHHHhCCCEEEE
Q 012124 202 PVILPTRISENFLLDPKVLESKLTEKS---------RLLILCSP-S--NPTGSVYPKNLLDEIARIVAKHPRLLVL 265 (470)
Q Consensus 202 ~~~v~~~~~~~~~~d~~~l~~~l~~~~---------~~i~l~~p-~--nPtG~~~s~~~~~~l~~~~~~~~~~~iI 265 (470)
...+-+.++.+|.+..+.+.++..... ..+ .+.. + .+.|-.++.+++++|++.|+++ ++-||
T Consensus 344 ~lh~HltDdqgwriei~~yP~Lt~~Ga~r~~~~~~~~~~-~p~~g~~~~~~~g~YT~~direIv~YA~~r-gI~VI 417 (858)
T 1c7s_A 344 KFHFHLSDDEGWRIEIPGLPELTEVGGQRCHDLSETTCL-LPQYGQGPDVYGGFFSRQDYIDIIKYAQAR-QIEVI 417 (858)
T ss_dssp EEEEECEETTEECBCCTTCTHHHHTTTEECSCTTCSSSB-CCCTTCCSSCEECCBCHHHHHHHHHHHHTT-TCEEE
T ss_pred EEEEEeccCccccccccCCchhhhccccccccccccccc-cccccCCCCccCCCCCHHHHHHHHHHHHHc-CCEEE
Confidence 888877666667666554433321000 000 1111 1 1456789999999999999999 99888
No 393
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=53.22 E-value=0.78 Score=39.43 Aligned_cols=29 Identities=3% Similarity=-0.041 Sum_probs=26.8
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
++.+||..+|+||.| +..+|+++|+|+..
T Consensus 169 t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~ 200 (210)
T 3ryp_A 169 TRQEIGQIVGCSRETVGRILKMLEDQNLISAH 200 (210)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHhCCcHHHHHHHHHHHHHCCcEEeC
Confidence 577999999999999 99999999999865
No 394
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=53.19 E-value=36 Score=29.87 Aligned_cols=98 Identities=11% Similarity=0.083 Sum_probs=54.5
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc------C
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT------E 226 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~------~ 226 (470)
+...++||.|+...=..+.+.|.+.|..|++.+-.-.......+..+.++..+..|-. |.+.+++.++ .
T Consensus 8 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~-----~~~~~~~~~~~~~~~~g 82 (261)
T 3n74_A 8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADIS-----KEADVDAAVEAALSKFG 82 (261)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTT-----SHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCC-----CHHHHHHHHHHHHHhcC
Confidence 4445666666655445666778888988877654433344455556666666666432 4555555443 1
Q ss_pred CceEEEEcCCC-CCcc--cCCCHHHHHHHHHH
Q 012124 227 KSRLLILCSPS-NPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 227 ~~~~i~l~~p~-nPtG--~~~s~~~~~~l~~~ 255 (470)
+...++.+... .+.+ ..++.+++++..+.
T Consensus 83 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~ 114 (261)
T 3n74_A 83 KVDILVNNAGIGHKPQNAELVEPEEFDRIVGV 114 (261)
T ss_dssp CCCEEEECCCCCCCSCCGGGSCHHHHHHHHHH
T ss_pred CCCEEEECCccCCCCCCcccCCHHHHHHHHHH
Confidence 45555544332 2122 23477777766553
No 395
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=52.78 E-value=0.93 Score=28.48 Aligned_cols=17 Identities=6% Similarity=-0.318 Sum_probs=15.0
Q ss_pred CCCCCccccCCcccccc
Q 012124 25 AQIPGSVSFPSRYLHNF 41 (470)
Q Consensus 25 s~R~La~~l~vs~~TAy 41 (470)
|.+++|+.||||++|.|
T Consensus 23 s~~~IA~~lgis~~Tv~ 39 (51)
T 1tc3_C 23 SLHEMSRKISRSRHCIR 39 (51)
T ss_dssp CHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHCcCHHHHH
Confidence 68999999999999933
No 396
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=52.66 E-value=0.82 Score=39.51 Aligned_cols=29 Identities=7% Similarity=-0.090 Sum_probs=26.8
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
++.+||..+|+||.| +..+|+++|+|+..
T Consensus 165 t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 196 (216)
T 4ev0_A 165 RHHELAALAGTSRETVSRVLHALAEEGVVRLG 196 (216)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 578999999999999 99999999999754
No 397
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*
Probab=52.57 E-value=1.1e+02 Score=29.23 Aligned_cols=88 Identities=8% Similarity=0.005 Sum_probs=43.7
Q ss_pred cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH-HHHHHhcC-CCCeEEEcCCCCCC---------------hHH
Q 012124 131 AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL-QAVLAVCS-PGDEVIIPAPFWVS---------------YPE 193 (470)
Q Consensus 131 ~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~-~~~~~l~~-~gd~Vlv~~p~y~~---------------~~~ 193 (470)
.|..+-.+.-.+|.+....+. ....+++.+|++.+|- .+...|.. .|-.|++.+-.-.. ...
T Consensus 24 ~gc~~~v~~qi~~~~~~~~~~-~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~ 102 (405)
T 3zu3_A 24 TGCEANVKKQIDYVTTEGPIA-NGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHK 102 (405)
T ss_dssp HHHHHHHHHHHHHHHHHCCCT-TCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcC-CCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHH
Confidence 444443333334665533332 3344444444444554 45556777 78777653211111 122
Q ss_pred HHHHcCCEEEEecCcCCCCCccCHHhHhhhc
Q 012124 194 MARIADATPVILPTRISENFLLDPKVLESKL 224 (470)
Q Consensus 194 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l 224 (470)
.++..|.+...+..|- -|.+.+++++
T Consensus 103 ~~~~~G~~a~~i~~Dv-----td~~~v~~~v 128 (405)
T 3zu3_A 103 FAAQKGLYAKSINGDA-----FSDEIKQLTI 128 (405)
T ss_dssp HHHHTTCCEEEEESCT-----TSHHHHHHHH
T ss_pred HHHhcCCceEEEECCC-----CCHHHHHHHH
Confidence 4456788877777643 2555555544
No 398
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=52.52 E-value=0.95 Score=36.92 Aligned_cols=31 Identities=6% Similarity=-0.171 Sum_probs=27.8
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.++++++| ..+.|+++|||+...
T Consensus 58 ~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~ 91 (155)
T 3cdh_A 58 MMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVA 91 (155)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 4688999999999999 999999999998653
No 399
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=52.49 E-value=0.74 Score=37.48 Aligned_cols=31 Identities=0% Similarity=-0.245 Sum_probs=27.9
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.+++|++| ..+.|+++|||+...
T Consensus 62 ~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 62 RSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred cCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecC
Confidence 3688999999999999 999999999998754
No 400
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=52.23 E-value=0.76 Score=37.44 Aligned_cols=31 Identities=0% Similarity=-0.183 Sum_probs=28.0
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.+++|++| ..+.|+++|||+..+
T Consensus 52 ~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 85 (155)
T 1s3j_A 52 LKVSEIAERMEVKPSAVTLMADRLEQKNLIARTH 85 (155)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecC
Confidence 3688999999999999 999999999998764
No 401
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=52.06 E-value=0.84 Score=36.92 Aligned_cols=31 Identities=3% Similarity=-0.242 Sum_probs=28.0
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.++++++| ..+.|+++|||+..+
T Consensus 57 ~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~ 90 (150)
T 2rdp_A 57 LTVGELSNKMYLACSTTTDLVDRMERNGLVARVR 90 (150)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecC
Confidence 4688999999999999 999999999998754
No 402
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=51.92 E-value=0.99 Score=36.82 Aligned_cols=31 Identities=3% Similarity=-0.158 Sum_probs=28.0
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.++++++| ..+.|+++|||+...
T Consensus 59 ~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~ 92 (154)
T 2eth_A 59 KKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREM 92 (154)
T ss_dssp BCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 4688999999999999 999999999998764
No 403
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=51.87 E-value=0.85 Score=36.63 Aligned_cols=31 Identities=10% Similarity=-0.218 Sum_probs=28.1
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.+..+||+.+++|++| ..+.|+++|||+..+
T Consensus 48 ~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~ 81 (145)
T 2a61_A 48 KRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTP 81 (145)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecC
Confidence 4788999999999999 999999999998764
No 404
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=51.80 E-value=0.88 Score=38.96 Aligned_cols=29 Identities=7% Similarity=-0.189 Sum_probs=26.7
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
++.+||..+|+||.| +..+|+++|+|+..
T Consensus 148 t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 179 (202)
T 2zcw_A 148 THDELAAAVGSVRETVTKVIGELAREGYIRSG 179 (202)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC
Confidence 577999999999999 99999999999854
No 405
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=51.77 E-value=0.64 Score=37.40 Aligned_cols=31 Identities=3% Similarity=-0.061 Sum_probs=28.4
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhhc
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMAC 55 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g 55 (470)
++.+||+.++++++| ..+.|+++|||+..+.
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~ 85 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRD 85 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccC
Confidence 889999999999999 9999999999987643
No 406
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=51.76 E-value=1 Score=39.68 Aligned_cols=36 Identities=3% Similarity=-0.146 Sum_probs=29.8
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
++.+||+.++|+++| +.++|+++|||+..+. .+.+.
T Consensus 26 ~~~~la~~l~vs~~tvs~~l~~Le~~GlV~r~~~-~~v~L 64 (226)
T 2qq9_A 26 LRARIAERLEQSGPTVSQTVARMERDGLVVVASD-RSLQM 64 (226)
T ss_dssp BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT-SBEEE
T ss_pred cHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC-CCeEE
Confidence 347999999999999 9999999999988754 44443
No 407
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=51.60 E-value=92 Score=27.76 Aligned_cols=98 Identities=14% Similarity=0.148 Sum_probs=55.6
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCC-------Ch---HHHHHHcCCEEEEecCcCCCCCccCHHhHhh
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWV-------SY---PEMARIADATPVILPTRISENFLLDPKVLES 222 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~-------~~---~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 222 (470)
....++||.|+...=..+.+.|.+.|..|++.+-.-. .. ...++..|.++..+..|-. |.+.+++
T Consensus 8 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~ 82 (285)
T 3sc4_A 8 RGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIR-----DGDAVAA 82 (285)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTT-----SHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCC-----CHHHHHH
Confidence 4445667766655555667778888988876543322 11 2234456778888876532 5555555
Q ss_pred hcc------CCceEEEEcCCCCCcc--cCCCHHHHHHHHHH
Q 012124 223 KLT------EKSRLLILCSPSNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 223 ~l~------~~~~~i~l~~p~nPtG--~~~s~~~~~~l~~~ 255 (470)
.++ .+...++.+....+.+ ..++.++++++.+.
T Consensus 83 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~v 123 (285)
T 3sc4_A 83 AVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGI 123 (285)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 543 1455555443332222 24577777776654
No 408
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=51.53 E-value=0.8 Score=37.72 Aligned_cols=31 Identities=3% Similarity=-0.220 Sum_probs=28.0
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.++++++| ..+.|+++|||+..+
T Consensus 67 ~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~ 100 (162)
T 3cjn_A 67 LPIGTLGIFAVVEQSTLSRALDGLQADGLVRREV 100 (162)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecC
Confidence 3688999999999999 999999999998764
No 409
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=51.51 E-value=28 Score=31.10 Aligned_cols=96 Identities=13% Similarity=0.064 Sum_probs=52.1
Q ss_pred CcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc---C--Cce
Q 012124 155 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT---E--KSR 229 (470)
Q Consensus 155 ~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---~--~~~ 229 (470)
..++||.|+...=..+.+.|.+.|..|++.+-.-.......+..+.++..+..|-. |.+.++++++ . +..
T Consensus 31 k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~-----~~~~v~~~~~~~~~~~~id 105 (281)
T 3ppi_A 31 ASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAEFVSTNVT-----SEDSVLAAIEAANQLGRLR 105 (281)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTT-----CHHHHHHHHHHHTTSSEEE
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEcCCC-----CHHHHHHHHHHHHHhCCCC
Confidence 35666666655555666778888988877654333334445555666666665432 4555544442 2 334
Q ss_pred EEEEcCC-CCCcc-------cCCCHHHHHHHHHH
Q 012124 230 LLILCSP-SNPTG-------SVYPKNLLDEIARI 255 (470)
Q Consensus 230 ~i~l~~p-~nPtG-------~~~s~~~~~~l~~~ 255 (470)
.++.+.. ..+.+ ...+.+.+++..+.
T Consensus 106 ~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (281)
T 3ppi_A 106 YAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDL 139 (281)
T ss_dssp EEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHH
T ss_pred eEEEccCcccccccccccccccCCHHHHHHHHHH
Confidence 4444422 22222 34676767666653
No 410
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=51.49 E-value=45 Score=29.70 Aligned_cols=98 Identities=6% Similarity=-0.016 Sum_probs=54.6
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH---HHHcCCEEEEecCcCCCCCccCHHhHhhhccC---
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM---ARIADATPVILPTRISENFLLDPKVLESKLTE--- 226 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~--- 226 (470)
....++||.|+...=..+.+.|.+.|..|++.+-.-...... ++..|.++..+..|- -|.+.+++.++.
T Consensus 25 ~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~ 99 (271)
T 4ibo_A 25 GGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDV-----TSESEIIEAFARLDE 99 (271)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCT-----TCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCC-----CCHHHHHHHHHHHHH
Confidence 444566666655555566777888998888865432222222 234577777777643 255666555532
Q ss_pred ---CceEEEEcCCCCCcc--cCCCHHHHHHHHHH
Q 012124 227 ---KSRLLILCSPSNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 227 ---~~~~i~l~~p~nPtG--~~~s~~~~~~l~~~ 255 (470)
+...++.+....+.+ ..++.+++++..+.
T Consensus 100 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~v 133 (271)
T 4ibo_A 100 QGIDVDILVNNAGIQFRKPMIELETADWQRVIDT 133 (271)
T ss_dssp HTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHH
Confidence 455554433322222 24577777776653
No 411
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=51.47 E-value=0.92 Score=36.93 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=25.3
Q ss_pred CCCCCccccCCcccc---ccccccccchhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRV 52 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s 52 (470)
++.+||+.++++++| ..+.|+++|||+.
T Consensus 54 t~~eLa~~l~~~~~tvsr~v~~Le~~glVr~ 84 (148)
T 4fx0_A 54 TMSELAARIGVERTTLTRNLEVMRRDGLVRV 84 (148)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC-
T ss_pred CHHHHHHHHCCChhhHHHHHHHHHHCCCEEe
Confidence 578999999999999 9999999999943
No 412
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=51.34 E-value=21 Score=32.65 Aligned_cols=77 Identities=12% Similarity=0.147 Sum_probs=49.2
Q ss_pred CCCCCChHHHHHHcC-CEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEE
Q 012124 185 APFWVSYPEMARIAD-ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLL 263 (470)
Q Consensus 185 ~p~y~~~~~~~~~~g-~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~ 263 (470)
-|+|....++.+..+ .++.-+-+.++ .-++.++++++.+++.+++.+. | ++.++.++|.+.|+++ ++.
T Consensus 56 ~~vy~sl~el~~~~~~~DvaIi~vp~~----~~~~~v~ea~~~Gi~~vVi~t~----G--~~~~~~~~l~~~A~~~-gi~ 124 (297)
T 2yv2_A 56 VPVYDSVKEALAEHPEINTSIVFVPAP----FAPDAVYEAVDAGIRLVVVITE----G--IPVHDTMRFVNYARQK-GAT 124 (297)
T ss_dssp EEEESSHHHHHHHCTTCCEEEECCCGG----GHHHHHHHHHHTTCSEEEECCC----C--CCHHHHHHHHHHHHHH-TCE
T ss_pred EeeeCCHHHHhhcCCCCCEEEEecCHH----HHHHHHHHHHHCCCCEEEEECC----C--CCHHHHHHHHHHHHHc-CCE
Confidence 345666666665333 45444433222 3567788888888886655332 2 2567789999999999 998
Q ss_pred EEEeccccc
Q 012124 264 VLSDEIYEH 272 (470)
Q Consensus 264 iI~Dd~~~~ 272 (470)
++-..+.+-
T Consensus 125 viGPNc~Gi 133 (297)
T 2yv2_A 125 IIGPNCPGA 133 (297)
T ss_dssp EECSSSCEE
T ss_pred EEcCCCCee
Confidence 886665543
No 413
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=51.28 E-value=0.82 Score=33.93 Aligned_cols=28 Identities=4% Similarity=-0.219 Sum_probs=25.7
Q ss_pred CCCCCCccccCCcccc----ccccccccchhh
Q 012124 24 PAQIPGSVSFPSRYLH----NFNLNNDRRVLR 51 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T----Ay~~L~~~G~i~ 51 (470)
+++.+||+.++++++| ..+.|+++|||+
T Consensus 31 ~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 31 PSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp CCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred CCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 5789999999999998 688999999998
No 414
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=51.25 E-value=0.82 Score=38.03 Aligned_cols=31 Identities=0% Similarity=-0.187 Sum_probs=27.8
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.++++++| ..+.|+++|||+..+
T Consensus 60 ~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 93 (168)
T 2nyx_A 60 INLATLATLLGVQPSATGRMVDRLVGAELIDRLP 93 (168)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecc
Confidence 3688999999999999 999999999998754
No 415
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A*
Probab=51.11 E-value=30 Score=31.38 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=35.0
Q ss_pred hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEecc
Q 012124 191 YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 269 (470)
Q Consensus 191 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~ 269 (470)
....++.+|++.+.+|+..+..+.. + +.+.+++++++|.++ |+.||.|-.
T Consensus 37 ~~~~lk~~G~N~VRi~~~~~~~w~~----------------------~------~~~~ld~~v~~a~~~-Gi~Vild~h 86 (302)
T 1bqc_A 37 AFADIKSHGANTVRVVLSNGVRWSK----------------------N------GPSDVANVISLCKQN-RLICMLEVH 86 (302)
T ss_dssp HHHHHHHTTCSEEEEEECCSSSSCC----------------------C------CHHHHHHHHHHHHHT-TCEEEEEEG
T ss_pred HHHHHHHcCCCEEEEEccCCcccCC----------------------C------CHHHHHHHHHHHHHC-CCEEEEEec
Confidence 4456677899998888753211100 0 357899999999999 999998843
No 416
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=51.09 E-value=0.8 Score=34.96 Aligned_cols=30 Identities=3% Similarity=-0.154 Sum_probs=27.1
Q ss_pred CCCCCcccc-CCcccc---ccccccccchhhhhh
Q 012124 25 AQIPGSVSF-PSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 25 s~R~La~~l-~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
+..+|++.+ ++|.+| ..++|+++|+|+.++
T Consensus 29 ~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~ 62 (107)
T 2hzt_A 29 RTSELKRLMPNITQKMLTQQLRELEADGVINRIV 62 (107)
T ss_dssp CHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEee
Confidence 567999999 999999 999999999998764
No 417
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2
Probab=51.07 E-value=46 Score=29.13 Aligned_cols=96 Identities=13% Similarity=0.069 Sum_probs=50.1
Q ss_pred CcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------Cc
Q 012124 155 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KS 228 (470)
Q Consensus 155 ~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~ 228 (470)
..++||.|+...=..+.+.|.+.|..|++.+-.-.......+..|.++..+..|- -|.+.++++++. +.
T Consensus 7 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~v~~~~~~~~~~~g~i 81 (253)
T 1hxh_A 7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDV-----SSEADWTLVMAAVQRRLGTL 81 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCT-----TCHHHHHHHHHHHHHHHCSC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEEEccC-----CCHHHHHHHHHHHHHHcCCC
Confidence 3566665555444556667788898887765432222233333455666666542 255555555432 34
Q ss_pred eEEEEcCCCCCcc--cCCCHHHHHHHHHH
Q 012124 229 RLLILCSPSNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 229 ~~i~l~~p~nPtG--~~~s~~~~~~l~~~ 255 (470)
..++.+....+.+ ...+.+++++..+.
T Consensus 82 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~ 110 (253)
T 1hxh_A 82 NVLVNNAGILLPGDMETGRLEDFSRLLKI 110 (253)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHh
Confidence 5554433322222 23566777666653
No 418
>3f8l_A HTH-type transcriptional repressor PHNF; GNTR, HUTC, regulator, UTRA, DNA-bindin transcription regulation; 1.90A {Mycobacterium smegmatis}
Probab=51.00 E-value=3.2 Score=35.61 Aligned_cols=21 Identities=10% Similarity=-0.195 Sum_probs=3.7
Q ss_pred cccccchhh-hhhcCCCcccccc
Q 012124 43 LNNDRRVLR-VMACSGVEEVQVD 64 (470)
Q Consensus 43 ~L~~~G~i~-s~~g~sG~~V~~~ 64 (470)
.-+++|||+ .++| +||||...
T Consensus 16 ~~~~~g~i~~r~qG-kGTfV~~~ 37 (201)
T 3f8l_A 16 LYKKAGFENLYFQG-SGAIRQPL 37 (201)
T ss_dssp ------------------CEEEC
T ss_pred hhhhccchheeeeC-CceEECCC
Confidence 447899998 7889 99999763
No 419
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=50.87 E-value=0.9 Score=35.35 Aligned_cols=30 Identities=10% Similarity=0.047 Sum_probs=27.5
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
+..+||+.+|+|++| -...|++.|+|+.+.
T Consensus 33 ~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~ 65 (118)
T 3f6o_A 33 TVSELAKPFDMALPSFMKHIHFLEDSGWIRTHK 65 (118)
T ss_dssp EHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEe
Confidence 677999999999999 899999999998874
No 420
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=50.51 E-value=46 Score=29.69 Aligned_cols=97 Identities=12% Similarity=0.166 Sum_probs=53.9
Q ss_pred CCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCC---------ChH------HHHHHcCCEEEEecCcCCCCCccCHH
Q 012124 154 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWV---------SYP------EMARIADATPVILPTRISENFLLDPK 218 (470)
Q Consensus 154 ~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~---------~~~------~~~~~~g~~~~~v~~~~~~~~~~d~~ 218 (470)
...++||.|+...=..+.+.|.+.|..|++.+-... ... ..++..|.++..+..|- -|.+
T Consensus 10 gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-----~~~~ 84 (287)
T 3pxx_A 10 DKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDV-----RDRA 84 (287)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCT-----TCHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccC-----CCHH
Confidence 345666666655555666778888988776432210 011 12344577777777643 2556
Q ss_pred hHhhhcc------CCceEEEEcCCCCCcccCCCHHHHHHHHHH
Q 012124 219 VLESKLT------EKSRLLILCSPSNPTGSVYPKNLLDEIARI 255 (470)
Q Consensus 219 ~l~~~l~------~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~ 255 (470)
.+++.++ .+...++.+....+.+..++.+++++..+.
T Consensus 85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~ 127 (287)
T 3pxx_A 85 AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDV 127 (287)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhh
Confidence 6555543 245555544433333444777777777664
No 421
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=50.49 E-value=0.93 Score=40.48 Aligned_cols=31 Identities=3% Similarity=-0.162 Sum_probs=28.0
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
-|+.+||+.++++++| ..+.|+++|||+...
T Consensus 167 ~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~~ 200 (244)
T 2wte_A 167 TGITELAKMLDKSEKTLINKIAELKKFGILTQKG 200 (244)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 3688999999999999 999999999998863
No 422
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=50.31 E-value=1.8 Score=40.59 Aligned_cols=22 Identities=5% Similarity=-0.245 Sum_probs=16.9
Q ss_pred CCCCCCCCCCCCccccCCcccc
Q 012124 18 FGHSKIPAQIPGSVSFPSRYLH 39 (470)
Q Consensus 18 ~~g~~lPs~R~La~~l~vs~~T 39 (470)
++|+|.|+++++|+..|||++|
T Consensus 5 ~~~~~~~ti~diA~~agVS~~T 26 (344)
T 3kjx_A 5 ADTKRPLTLRDVSEASGVSEMT 26 (344)
T ss_dssp -----CCCHHHHHHHHCCCSHH
T ss_pred ccCCCCCCHHHHHHHHCCCHHH
Confidence 6899999999999999999999
No 423
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=50.26 E-value=0.83 Score=39.14 Aligned_cols=37 Identities=5% Similarity=-0.148 Sum_probs=30.6
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
+.++||+.|+||..| +.+.|.++|||+..+ +|.+.+.
T Consensus 32 ~~~~LA~~LgvS~~SV~~~lkkL~e~GLV~~~~--~Gv~LTe 71 (200)
T 2p8t_A 32 GRKQISERLELGEGSVRTLLRKLSHLDIIRSKQ--RGHFLTL 71 (200)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CEEECH
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeC--CCeEECH
Confidence 457999999999999 999999999998875 4766654
No 424
>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*
Probab=50.20 E-value=85 Score=27.76 Aligned_cols=98 Identities=8% Similarity=0.039 Sum_probs=52.9
Q ss_pred CCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCCh--HHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC---
Q 012124 152 YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSY--PEMARIADATPVILPTRISENFLLDPKVLESKLTE--- 226 (470)
Q Consensus 152 ~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~--- 226 (470)
.+..-++||.|++..=..+...|.+.|-.|++.+-.-... ...+...|.+...+..|-. |.+.+++.+++
T Consensus 5 L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~v~~~~~ 79 (258)
T 4gkb_A 5 LQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQ-----DDAQCRDAVAQTIA 79 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecC-----CHHHHHHHHHHHHH
Confidence 3434455555554444555667888897777654332222 2234445666666666432 44555444422
Q ss_pred ---CceEEEEcCC--CCCcccCCCHHHHHHHHHH
Q 012124 227 ---KSRLLILCSP--SNPTGSVYPKNLLDEIARI 255 (470)
Q Consensus 227 ---~~~~i~l~~p--~nPtG~~~s~~~~~~l~~~ 255 (470)
+.. +++++. +.+....++.++++++.+.
T Consensus 80 ~~G~iD-iLVNnAGi~~~~~~~~~~e~~~~~~~v 112 (258)
T 4gkb_A 80 TFGRLD-GLVNNAGVNDGIGLDAGRDAFVASLER 112 (258)
T ss_dssp HHSCCC-EEEECCCCCCCCCTTSCHHHHHHHHHH
T ss_pred HhCCCC-EEEECCCCCCCCCccCCHHHHHHHHHH
Confidence 344 344444 3344456788888887764
No 425
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=50.17 E-value=1.1 Score=33.34 Aligned_cols=34 Identities=3% Similarity=-0.177 Sum_probs=29.2
Q ss_pred CCCCCCCcc-ccCCcccc---ccccccccchhhhhhcCCC
Q 012124 23 IPAQIPGSV-SFPSRYLH---NFNLNNDRRVLRVMACSGV 58 (470)
Q Consensus 23 lPs~R~La~-~l~vs~~T---Ay~~L~~~G~i~s~~g~sG 58 (470)
-+|..+||+ .+++.|+| ..+-|+.+|||+ ..+ .+
T Consensus 30 ~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe-~~~-~D 67 (95)
T 1bja_A 30 FITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE-KSG-DG 67 (95)
T ss_dssp TBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE-EET-TE
T ss_pred CCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee-cCC-CC
Confidence 467789999 99999999 899999999999 445 44
No 426
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=50.03 E-value=32 Score=30.10 Aligned_cols=98 Identities=11% Similarity=0.065 Sum_probs=52.2
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc------C
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT------E 226 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~------~ 226 (470)
....++||.|+...=..+.+.|.+.|..|++.+-.-.......+..+.+...+..|- -|.+.++++++ .
T Consensus 8 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g 82 (248)
T 3op4_A 8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNV-----TNPESIEAVLKAITDEFG 82 (248)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCT-----TCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeC-----CCHHHHHHHHHHHHHHcC
Confidence 334566666665544556677888998887765432223333444444444555432 25566655553 2
Q ss_pred CceEEEEcCCCCCcc--cCCCHHHHHHHHHH
Q 012124 227 KSRLLILCSPSNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG--~~~s~~~~~~l~~~ 255 (470)
+...++-+....+.+ ..++.+++++..+.
T Consensus 83 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~v 113 (248)
T 3op4_A 83 GVDILVNNAGITRDNLLMRMKEEEWSDIMET 113 (248)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 455554443322222 24577777776653
No 427
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=49.98 E-value=0.96 Score=39.20 Aligned_cols=29 Identities=3% Similarity=-0.102 Sum_probs=26.5
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
++.+||..+|+||.| +..+|+++|+|...
T Consensus 171 t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 202 (220)
T 3dv8_A 171 THETIANHLGSHREVITRMLRYFQVEGLVKLS 202 (220)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC
Confidence 477999999999999 99999999999754
No 428
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=49.97 E-value=1 Score=39.19 Aligned_cols=29 Identities=7% Similarity=-0.205 Sum_probs=27.0
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
++.+||..+|+||.| +..+|+++|+|+..
T Consensus 165 t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~ 196 (222)
T 1ft9_A 165 TVEEIANLIGSSRQTTSTALNSLIKEGYISRQ 196 (222)
T ss_dssp CHHHHHHHHCSCHHHHHHHHHHHHHTTSSEEC
T ss_pred CHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEc
Confidence 678999999999999 99999999999876
No 429
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=49.87 E-value=0.97 Score=39.48 Aligned_cols=32 Identities=3% Similarity=-0.121 Sum_probs=28.0
Q ss_pred CCC-CCCCCccccCCcccc---ccccccccchhhhh
Q 012124 22 KIP-AQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 22 ~lP-s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
.+| ++.+||..+|+||.| +..+|+++|+|+..
T Consensus 185 ~~~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 220 (230)
T 3iwz_A 185 QLRVSRQELARLVGCSREMAGRVLKKLQADGLLHAR 220 (230)
T ss_dssp EEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEC
Confidence 344 577999999999999 99999999999865
No 430
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=49.85 E-value=1.1 Score=39.21 Aligned_cols=29 Identities=7% Similarity=-0.079 Sum_probs=26.9
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
++.+||..+|+||.| +..+|+++|+|+..
T Consensus 182 t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 213 (232)
T 2gau_A 182 SREELATLSNMTVSNAIRTLSTFVSERMLALD 213 (232)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeC
Confidence 577999999999999 99999999999766
No 431
>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer, family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A* 2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*
Probab=49.77 E-value=29 Score=34.44 Aligned_cols=106 Identities=11% Similarity=0.074 Sum_probs=61.3
Q ss_pred CCCCCCcEEEecChHHHHHHHHHHhc---CC---CCe-----EEEcCCCCC-------------C------hHHHHHHcC
Q 012124 150 LSYTPDQILVSNGAKQSILQAVLAVC---SP---GDE-----VIIPAPFWV-------------S------YPEMARIAD 199 (470)
Q Consensus 150 ~~~~~~~i~it~g~~~al~~~~~~l~---~~---gd~-----Vlv~~p~y~-------------~------~~~~~~~~g 199 (470)
+.++++.|.|+..+..++.-.+++|. .. |.. .+.+.|.|+ + +.+.+...+
T Consensus 102 L~v~~~~i~I~a~~~~G~~~g~qTl~QL~~~~~~~~~~ip~~~I~D~P~f~~RG~mlD~aR~f~~~~~ik~~id~ma~~K 181 (507)
T 1now_A 102 LLVKEPVAVLKANRVWGALRGLETFSQLVYQDSYGTFTINESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNK 181 (507)
T ss_dssp EEECSSEEEEEESSHHHHHHHHHHHHHHCEECTTSCEEEEEEEEEECCSCSEEEEEEESSSSCCCHHHHHHHHHHHHHTT
T ss_pred EEEcCCeEEEEECCHHHHHHHHHHHHHHHhhccCceEEeccEEEEecCccceeeeeeccCCCCCCHHHHHHHHHHHHHhC
Confidence 34567789998777766665665542 11 111 234556554 1 123344566
Q ss_pred CEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEE
Q 012124 200 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 265 (470)
Q Consensus 200 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI 265 (470)
++...+-+.++.+|.+..+.+.++.... ...| |..++.+++++|++.|+++ ++-||
T Consensus 182 lN~lh~HltDdq~wr~e~~~~P~Lt~~G--------a~~~-~~~YT~~di~eiv~yA~~r-gI~VI 237 (507)
T 1now_A 182 FNVLHWHIVDDQSFPYQSITFPELSNKG--------SYSL-SHVYTPNDVRMVIEYARLR-GIRVL 237 (507)
T ss_dssp CCEEEEECCCSSCCCBCCSSCHHHHHHH--------SSST-TSCBCHHHHHHHHHHHHHT-TCEEE
T ss_pred CcEEEEeeccCccceeeccchhhhhccc--------CcCC-CCCCCHHHHHHHHHHHHHc-CCEEE
Confidence 6666666654445554433222211000 0012 6679999999999999999 99888
No 432
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=49.65 E-value=14 Score=33.79 Aligned_cols=76 Identities=9% Similarity=0.124 Sum_probs=48.5
Q ss_pred CCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEE
Q 012124 186 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 265 (470)
Q Consensus 186 p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI 265 (470)
|+|....++.+....+++-+-+.++ .-.+.++++++.+++.+++.+. |. +.++.+++.+.|+++ ++.++
T Consensus 57 ~vy~sl~el~~~~~~Dv~ii~vp~~----~~~~~v~ea~~~Gi~~vVi~t~----G~--~~~~~~~l~~~A~~~-gi~vi 125 (294)
T 2yv1_A 57 PVFDTVKEAVKETDANASVIFVPAP----FAKDAVFEAIDAGIELIVVITE----HI--PVHDTMEFVNYAEDV-GVKII 125 (294)
T ss_dssp EEESSHHHHHHHHCCCEEEECCCHH----HHHHHHHHHHHTTCSEEEECCS----CC--CHHHHHHHHHHHHHH-TCEEE
T ss_pred eeeCCHHHHhhcCCCCEEEEccCHH----HHHHHHHHHHHCCCCEEEEECC----CC--CHHHHHHHHHHHHHc-CCEEE
Confidence 4466666666633455544443221 3567777777778886654332 32 567789999999999 99888
Q ss_pred Eeccccc
Q 012124 266 SDEIYEH 272 (470)
Q Consensus 266 ~Dd~~~~ 272 (470)
-..+.+-
T Consensus 126 GPNc~Gi 132 (294)
T 2yv1_A 126 GPNTPGI 132 (294)
T ss_dssp CSSCCEE
T ss_pred cCCCcee
Confidence 6665543
No 433
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=49.50 E-value=27 Score=30.38 Aligned_cols=95 Identities=9% Similarity=0.198 Sum_probs=49.7
Q ss_pred cEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc------CCce
Q 012124 156 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT------EKSR 229 (470)
Q Consensus 156 ~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~------~~~~ 229 (470)
.++||.|+...=..+.+.|.+.|..|++.+-.-.......+..+.++..+..|- -|.+.++++++ .+..
T Consensus 5 ~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~v~~~~~~~~~~~g~id 79 (235)
T 3l6e_A 5 HIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADL-----AHHEDVDVAFAAAVEWGGLPE 79 (235)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCT-----TSHHHHHHHHHHHHHHHCSCS
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCceEEECCC-----CCHHHHHHHHHHHHHhcCCCc
Confidence 466666665555556677888898887765433233333333333455555532 24555555443 2455
Q ss_pred EEEEcCCCCCccc--CCCHHHHHHHHHH
Q 012124 230 LLILCSPSNPTGS--VYPKNLLDEIARI 255 (470)
Q Consensus 230 ~i~l~~p~nPtG~--~~s~~~~~~l~~~ 255 (470)
.++.+....+.+. .++.+++++..+.
T Consensus 80 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~ 107 (235)
T 3l6e_A 80 LVLHCAGTGEFGPVGVYTAEQIRRVMES 107 (235)
T ss_dssp EEEEECCCC------CCCHHHHHHHHHH
T ss_pred EEEECCCCCCCCChHhCCHHHHHHHHHH
Confidence 5554433332222 4577777776664
No 434
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=49.26 E-value=1.1 Score=39.92 Aligned_cols=37 Identities=3% Similarity=-0.227 Sum_probs=31.0
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
.+..+||+.+|++++| -.+.|+++|||+.... .|.|.
T Consensus 22 ~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~-~~~Y~ 61 (241)
T 2xrn_A 22 LSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGP-AGGFR 61 (241)
T ss_dssp EEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECGG-GCEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC-CCeEE
Confidence 4688999999999999 8889999999988755 45553
No 435
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=49.24 E-value=1.1 Score=37.63 Aligned_cols=30 Identities=10% Similarity=-0.149 Sum_probs=26.6
Q ss_pred CCCCCCCCccccCCcccc---ccccccccchhhh
Q 012124 22 KIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRV 52 (470)
Q Consensus 22 ~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s 52 (470)
++ |.++||+.+|+|.+| -.++|+++|+|+.
T Consensus 41 ~~-s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 41 KA-PLREISKITGLAESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp TC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred CC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEe
Confidence 44 488999999999999 8899999999965
No 436
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=49.03 E-value=0.89 Score=36.46 Aligned_cols=30 Identities=3% Similarity=-0.159 Sum_probs=27.7
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
+..+||+.+++|++| +.+.|+++|||+..+
T Consensus 45 t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 45 IQEKIAELIKVDRTTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 688999999999999 999999999998764
No 437
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=48.86 E-value=1 Score=35.82 Aligned_cols=31 Identities=0% Similarity=-0.179 Sum_probs=27.9
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.++++++| ..+.|+++|||+...
T Consensus 49 ~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~ 82 (138)
T 1jgs_A 49 ITPVELKKVLSVDLGALTRMLDRLVCKGWVERLP 82 (138)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecC
Confidence 3788999999999999 999999999998753
No 438
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Probab=48.65 E-value=62 Score=28.37 Aligned_cols=94 Identities=10% Similarity=0.091 Sum_probs=49.4
Q ss_pred cEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCC-hHHHHHH---c-CCEEEEecCcCCCCCccCHHhHhhhccC----
Q 012124 156 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS-YPEMARI---A-DATPVILPTRISENFLLDPKVLESKLTE---- 226 (470)
Q Consensus 156 ~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~-~~~~~~~---~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~---- 226 (470)
.++||.|+...=..+.+.|.+.|..|++.+-.-.. .....+. . |.++..+..|- -|.+.++++++.
T Consensus 6 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~v~~~~~~~~~~ 80 (260)
T 1x1t_A 6 VAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADL-----SKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCT-----TSHHHHHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCC-----CCHHHHHHHHHHHHHh
Confidence 46666555544455666778889888775543222 2222221 1 66666666543 255666555532
Q ss_pred --CceEEEEcCCCCCcc--cCCCHHHHHHHHH
Q 012124 227 --KSRLLILCSPSNPTG--SVYPKNLLDEIAR 254 (470)
Q Consensus 227 --~~~~i~l~~p~nPtG--~~~s~~~~~~l~~ 254 (470)
+...++.+....+.+ ..++.+++++..+
T Consensus 81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 112 (260)
T 1x1t_A 81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILA 112 (260)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHH
Confidence 455555433322222 2356677766665
No 439
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=48.56 E-value=73 Score=28.69 Aligned_cols=98 Identities=12% Similarity=0.109 Sum_probs=52.7
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHH---cC-CEEEEecCcCCCCCccCHHhHhhhcc---
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI---AD-ATPVILPTRISENFLLDPKVLESKLT--- 225 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~---~g-~~~~~v~~~~~~~~~~d~~~l~~~l~--- 225 (470)
+...++||.|+...=..+.+.|.+.|-.|++.+-.-.......+. .+ .++..+..|- -|.+.++++++
T Consensus 40 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~ 114 (293)
T 3rih_A 40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDV-----SDPGSCADAARTVV 114 (293)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCT-----TCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeC-----CCHHHHHHHHHHHH
Confidence 334566665555544556677888898887765443344443332 23 4555565542 25555555443
Q ss_pred ---CCceEEEEcCCCCCccc--CCCHHHHHHHHHH
Q 012124 226 ---EKSRLLILCSPSNPTGS--VYPKNLLDEIARI 255 (470)
Q Consensus 226 ---~~~~~i~l~~p~nPtG~--~~s~~~~~~l~~~ 255 (470)
.+...++-+....+.+. .++.++++++.+.
T Consensus 115 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~v 149 (293)
T 3rih_A 115 DAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDV 149 (293)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 14555544333332222 4577777777764
No 440
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=48.52 E-value=74 Score=27.22 Aligned_cols=95 Identities=6% Similarity=0.011 Sum_probs=53.5
Q ss_pred cEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecCcCCCCCccCHHhHhhhccC-----
Q 012124 156 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRISENFLLDPKVLESKLTE----- 226 (470)
Q Consensus 156 ~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----- 226 (470)
.++||.|+...-..+.+.|.+.|..|++.+..-....... +..|.++..+..|- -|.+.++++++.
T Consensus 4 ~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~v~~~~~~~~~~~ 78 (235)
T 3l77_A 4 VAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDV-----SKAESVEEFSKKVLERF 78 (235)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCT-----TCHHHHHHHCC-HHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEecc-----CCHHHHHHHHHHHHHhc
Confidence 4666666655445566778888988877554322222222 24567777776643 266777776653
Q ss_pred -CceEEEEcCCCCCccc--CCCHHHHHHHHHH
Q 012124 227 -KSRLLILCSPSNPTGS--VYPKNLLDEIARI 255 (470)
Q Consensus 227 -~~~~i~l~~p~nPtG~--~~s~~~~~~l~~~ 255 (470)
+...++.+....+.+. .++.+++++..+.
T Consensus 79 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~ 110 (235)
T 3l77_A 79 GDVDVVVANAGLGYFKRLEELSEEEFHEMIEV 110 (235)
T ss_dssp SSCSEEEECCCCCCCCCTTTSCHHHHHHHHHH
T ss_pred CCCCEEEECCccccccCcccCCHHHHHHHHHH
Confidence 4555554443332222 3477777776653
No 441
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=48.47 E-value=0.68 Score=36.05 Aligned_cols=31 Identities=0% Similarity=-0.204 Sum_probs=27.7
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
-+..+||+.+++|++| ..+.|++.|+|....
T Consensus 46 ~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 46 LPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp CCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4788999999999999 999999999997653
No 442
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=48.30 E-value=0.95 Score=36.83 Aligned_cols=29 Identities=3% Similarity=-0.285 Sum_probs=27.1
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRV 52 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s 52 (470)
.++.+||+.++++++| ..+.|+++|||+.
T Consensus 56 ~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 56 ISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 4688999999999999 9999999999987
No 443
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*
Probab=48.28 E-value=40 Score=29.58 Aligned_cols=95 Identities=8% Similarity=0.031 Sum_probs=49.0
Q ss_pred CcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc------CCc
Q 012124 155 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT------EKS 228 (470)
Q Consensus 155 ~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~------~~~ 228 (470)
..++||.|+...=..+.+.|.+.|..|++.+-.-.......+..|.++..+..|- -|.+.++++++ .+.
T Consensus 6 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~~~~~~~~~~~~~g~i 80 (254)
T 1hdc_A 6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDV-----TIEEDWQRVVAYAREEFGSV 80 (254)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCT-----TCHHHHHHHHHHHHHHHSCC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEecC-----CCHHHHHHHHHHHHHHcCCC
Confidence 4566666555544566677888898877654321122233333454555555532 25555555543 145
Q ss_pred eEEEEcCCCCCcc--cCCCHHHHHHHHH
Q 012124 229 RLLILCSPSNPTG--SVYPKNLLDEIAR 254 (470)
Q Consensus 229 ~~i~l~~p~nPtG--~~~s~~~~~~l~~ 254 (470)
..++.+....+.+ ...+.+++++..+
T Consensus 81 D~lv~nAg~~~~~~~~~~~~~~~~~~~~ 108 (254)
T 1hdc_A 81 DGLVNNAGISTGMFLETESVERFRKVVE 108 (254)
T ss_dssp CEEEECCCCCCCSCGGGSCHHHHHHHHH
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHH
Confidence 5555433322222 2356666666555
No 444
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=48.26 E-value=1.1 Score=38.98 Aligned_cols=29 Identities=7% Similarity=-0.079 Sum_probs=26.8
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
++.+||..+|+||.| +..+|+++|+|+..
T Consensus 169 t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 200 (220)
T 2fmy_A 169 NTEEIALMLGTTRQTVSVLLNDFKKMGILERV 200 (220)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEES
T ss_pred CHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEc
Confidence 578999999999999 99999999999764
No 445
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=48.16 E-value=42 Score=29.54 Aligned_cols=98 Identities=13% Similarity=0.084 Sum_probs=54.0
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH---HHHHcCCEEEEecCcCCCCCccCHHhHhhhcc----
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE---MARIADATPVILPTRISENFLLDPKVLESKLT---- 225 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---- 225 (470)
+...++||.|+...=..+.+.|.+.|..|++.+-.-..... .++..|.++..+..|- -|.+.+++.++
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~ 85 (256)
T 3gaf_A 11 NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNV-----TDEQHREAVIKAALD 85 (256)
T ss_dssp TTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCT-----TCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCC-----CCHHHHHHHHHHHHH
Confidence 44456666665555556667788889888775543222222 2334577777776643 25555555543
Q ss_pred --CCceEEEEcCCC-CCcccCCCHHHHHHHHHH
Q 012124 226 --EKSRLLILCSPS-NPTGSVYPKNLLDEIARI 255 (470)
Q Consensus 226 --~~~~~i~l~~p~-nPtG~~~s~~~~~~l~~~ 255 (470)
.+...++.+... .+.....+.+++++..+.
T Consensus 86 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~v 118 (256)
T 3gaf_A 86 QFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKL 118 (256)
T ss_dssp HHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHH
T ss_pred HcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHH
Confidence 245555544332 222235677777776653
No 446
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=48.03 E-value=53 Score=29.09 Aligned_cols=98 Identities=11% Similarity=0.141 Sum_probs=51.6
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecCcCCCCCccCHHhHhhhcc---
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRISENFLLDPKVLESKLT--- 225 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~--- 225 (470)
....++||.|+...=..+.+.|.+.|..|++.+-.-....... +..|.++..+..|- -|.+.++++++
T Consensus 20 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl-----~~~~~v~~~~~~~~ 94 (267)
T 1vl8_A 20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDV-----SNYEEVKKLLEAVK 94 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCT-----TCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCC-----CCHHHHHHHHHHHH
Confidence 3345666666555455666778888988777543221222222 22366666666542 25566655553
Q ss_pred ---CCceEEEEcCCCCCcc--cCCCHHHHHHHHHH
Q 012124 226 ---EKSRLLILCSPSNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 226 ---~~~~~i~l~~p~nPtG--~~~s~~~~~~l~~~ 255 (470)
.+...++.+......+ ..++.++++++.+.
T Consensus 95 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~ 129 (267)
T 1vl8_A 95 EKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEV 129 (267)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHH
Confidence 1455555433322222 23566777766653
No 447
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=48.01 E-value=0.66 Score=30.37 Aligned_cols=26 Identities=4% Similarity=-0.092 Sum_probs=22.4
Q ss_pred CCCCccccCCcccc---ccccccccchhh
Q 012124 26 QIPGSVSFPSRYLH---NFNLNNDRRVLR 51 (470)
Q Consensus 26 ~R~La~~l~vs~~T---Ay~~L~~~G~i~ 51 (470)
++..|+.+||++.. +..+|+++|+|.
T Consensus 28 I~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 28 IEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 45678899999999 999999999984
No 448
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=47.88 E-value=61 Score=28.84 Aligned_cols=96 Identities=13% Similarity=0.149 Sum_probs=52.4
Q ss_pred CcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecCcCCCCCccCHHhHhhhcc-----
Q 012124 155 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRISENFLLDPKVLESKLT----- 225 (470)
Q Consensus 155 ~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----- 225 (470)
..++||.|+...=..+.+.|.+.|..|++.+-.-....... ...|.++..+..|-. |.+.++++++
T Consensus 28 k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~ 102 (277)
T 4fc7_A 28 KVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVR-----APPAVMAAVDQALKE 102 (277)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCC-----CHHHHHHHHHHHHHH
Confidence 45666666655555666778889988877554322222222 224667777766432 5555555543
Q ss_pred -CCceEEEEcCCCCCcc--cCCCHHHHHHHHHH
Q 012124 226 -EKSRLLILCSPSNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 226 -~~~~~i~l~~p~nPtG--~~~s~~~~~~l~~~ 255 (470)
.+...++.+......+ ..++.+++++..+.
T Consensus 103 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 135 (277)
T 4fc7_A 103 FGRIDILINCAAGNFLCPAGALSFNAFKTVMDI 135 (277)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred cCCCCEEEECCcCCCCCCcccCCHHHHHHHHHH
Confidence 2455554433322222 23577777777664
No 449
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=47.86 E-value=0.96 Score=38.52 Aligned_cols=30 Identities=3% Similarity=-0.143 Sum_probs=27.6
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
++.+||+.++++++| ..+.|+++|||+..+
T Consensus 59 t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 91 (189)
T 3nqo_A 59 TLNNIARKMGTSKQNINRLVANLEKNGYVDVIP 91 (189)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 588999999999999 999999999998764
No 450
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=47.79 E-value=69 Score=33.79 Aligned_cols=72 Identities=8% Similarity=0.144 Sum_probs=51.0
Q ss_pred CCCCCChHHHHHHc---CCEEEEecCcCCCCCccCHHhHhhhcc-CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC
Q 012124 185 APFWVSYPEMARIA---DATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 260 (470)
Q Consensus 185 ~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~ 260 (470)
-|+|++..++.+.. .+-++.+|. . .-++.++++++ ..++.+++.+-..| ....++|.++|+++
T Consensus 550 vp~y~sv~ea~~~~p~~DlaVI~vP~--~----~v~~av~ea~~~~Gvk~~Viis~Gf~------e~~~~~l~~~A~~~- 616 (829)
T 3pff_A 550 IPVFKNMADAMRKHPEVDVLINFASL--R----SAYDSTMETMNYAQIRTIAIIAEGIP------EALTRKLIKKADQK- 616 (829)
T ss_dssp EEEESSHHHHHHHCTTCCEEEECCCT--T----THHHHHHHHTTSTTCCEEEECCSCCC------HHHHHHHHHHHHHH-
T ss_pred cccCCcHHHHhhccCCCcEEEEeCCH--H----HHHHHHHHHHhhCCCCEEEEeCCCCC------HHHHHHHHHHHHHc-
Confidence 47888888877653 344455553 1 36788899888 88998877665443 35568899999999
Q ss_pred CEEEEEecc
Q 012124 261 RLLVLSDEI 269 (470)
Q Consensus 261 ~~~iI~Dd~ 269 (470)
++.||==++
T Consensus 617 g~rliGPNc 625 (829)
T 3pff_A 617 GVTIIGPAT 625 (829)
T ss_dssp TCEEECSSC
T ss_pred CCEEEcCCC
Confidence 999984333
No 451
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=47.72 E-value=1.1 Score=39.12 Aligned_cols=29 Identities=10% Similarity=-0.071 Sum_probs=27.0
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
++.+||..+|+||.| +..+|+++|+|...
T Consensus 177 t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~ 208 (231)
T 3e97_A 177 GTQDIMARTSSSRETVSRVLKRLEAHNILEVS 208 (231)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CHHHHHHHhCCcHHHHHHHHHHHHHCCcEEec
Confidence 688999999999999 99999999999765
No 452
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=47.38 E-value=1.2 Score=39.23 Aligned_cols=29 Identities=10% Similarity=0.055 Sum_probs=26.9
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
++.+||..+|+||.| +..+|+++|+|+..
T Consensus 188 t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~~ 219 (232)
T 1zyb_A 188 KMDDLARCLDDTRLNISKTLNELQDNGLIELH 219 (232)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEE
T ss_pred CHHHHHHHhCCChhHHHHHHHHHHHCCCEEec
Confidence 678999999999999 99999999999865
No 453
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=47.21 E-value=30 Score=32.19 Aligned_cols=76 Identities=8% Similarity=0.153 Sum_probs=49.2
Q ss_pred CCCCCChHHHHHHc-CCEEEEecCcCCCCCccCHHhHhhhcc-CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCE
Q 012124 185 APFWVSYPEMARIA-DATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 262 (470)
Q Consensus 185 ~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~ 262 (470)
-|.|.+..++.+.. ++++.-+-+.+. .-.+.+.+++. ..++.+++.+-.. +.++.+++.++|+++ ++
T Consensus 64 vpvy~sv~ea~~~~p~~DlaVi~vp~~----~a~~ai~ea~~~~Gv~~vViiT~G~------~e~~~~~l~~~a~~~-g~ 132 (334)
T 3mwd_B 64 IPVFKNMADAMRKHPEVDVLINFASLR----SAYDSTMETMNYAQIRTIAIIAEGI------PEALTRKLIKKADQK-GV 132 (334)
T ss_dssp EEEESSHHHHHHHCTTCCEEEECCCTT----THHHHHHHHTTSTTCCEEEECCSCC------CHHHHHHHHHHHHHH-TC
T ss_pred ceeeCCHHHHhhcCCCCcEEEEecCHH----HHHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHHc-CC
Confidence 47788888877654 355544433221 13466666776 6788877655443 346788999999999 99
Q ss_pred EEEEecccc
Q 012124 263 LVLSDEIYE 271 (470)
Q Consensus 263 ~iI~Dd~~~ 271 (470)
.||==++.+
T Consensus 133 rliGPNc~G 141 (334)
T 3mwd_B 133 TIIGPATVG 141 (334)
T ss_dssp EEECSSCCC
T ss_pred EEEccCCcc
Confidence 998444443
No 454
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=47.16 E-value=0.91 Score=35.60 Aligned_cols=30 Identities=3% Similarity=-0.102 Sum_probs=26.4
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
+..+||+.+|+|++| -...|++.|+|..+.
T Consensus 58 s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~ 90 (122)
T 1u2w_A 58 CVCDIANILGVTIANASHHLRTLYKQGVVNFRK 90 (122)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 567999999999999 888999999998763
No 455
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=47.02 E-value=52 Score=28.55 Aligned_cols=97 Identities=13% Similarity=0.076 Sum_probs=52.5
Q ss_pred CCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH---HHHHcCCEEEEecCcCCCCCccCHHhHhhhccC----
Q 012124 154 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE---MARIADATPVILPTRISENFLLDPKVLESKLTE---- 226 (470)
Q Consensus 154 ~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~---- 226 (470)
...++||.|+...=..+.+.|.+.|.+|++.+..-..... .++..|.++..+..|- -|.+.+++.++.
T Consensus 5 ~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~~~~~~~~~~~~ 79 (247)
T 3lyl_A 5 EKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNI-----SDIESIQNFFAEIKAE 79 (247)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCT-----TCHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecC-----CCHHHHHHHHHHHHHH
Confidence 3456666666555556667788889888765543222222 2334567777776643 255555554421
Q ss_pred --CceEEEEcCCCCCcc--cCCCHHHHHHHHHH
Q 012124 227 --KSRLLILCSPSNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 227 --~~~~i~l~~p~nPtG--~~~s~~~~~~l~~~ 255 (470)
+...++.+....+.+ ...+.+++++..+.
T Consensus 80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~ 112 (247)
T 3lyl_A 80 NLAIDILVNNAGITRDNLMMRMSEDEWQSVINT 112 (247)
T ss_dssp TCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHH
Confidence 455555443322222 24577777666653
No 456
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=46.96 E-value=0.99 Score=30.50 Aligned_cols=33 Identities=6% Similarity=-0.151 Sum_probs=27.7
Q ss_pred CCCCCCCCcccc-----CCccccccccccccchhhhhhc
Q 012124 22 KIPAQIPGSVSF-----PSRYLHNFNLNNDRRVLRVMAC 55 (470)
Q Consensus 22 ~lPs~R~La~~l-----~vs~~TAy~~L~~~G~i~s~~g 55 (470)
+-+|..+|++.| +||+.|.|.-|.+.|++ ....
T Consensus 18 ~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~lg~v-~~~~ 55 (64)
T 2p5k_A 18 EIETQDELVDMLKQDGYKVTQATVSRDIKELHLV-KVPT 55 (64)
T ss_dssp CCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHTCE-EEEE
T ss_pred CCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcCCE-EEec
Confidence 357889999999 99999999999999998 4443
No 457
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=46.86 E-value=1.2 Score=39.56 Aligned_cols=29 Identities=3% Similarity=0.053 Sum_probs=27.0
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
++.+||..+|+||.| +..+|+++|+|+..
T Consensus 195 t~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~ 226 (243)
T 3la7_A 195 SHQAIAEAIGSTRVTVTRLLGDLREKKMISIH 226 (243)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEc
Confidence 678999999999999 99999999999865
No 458
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=46.78 E-value=20 Score=32.56 Aligned_cols=77 Identities=9% Similarity=0.061 Sum_probs=48.9
Q ss_pred CCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEE
Q 012124 185 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 264 (470)
Q Consensus 185 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~i 264 (470)
-|.|....++.+....++.-+-+.++ .-.+.++++++.+++.+++.+. | ++.++.+++.+.|+++ ++.+
T Consensus 50 ~~vy~sl~el~~~~~~Dv~Ii~vp~~----~~~~~~~ea~~~Gi~~vVi~t~----G--~~~~~~~~l~~~a~~~-gi~v 118 (288)
T 1oi7_A 50 VPVYDTVKEAVAHHEVDASIIFVPAP----AAADAALEAAHAGIPLIVLITE----G--IPTLDMVRAVEEIKAL-GSRL 118 (288)
T ss_dssp EEEESSHHHHHHHSCCSEEEECCCHH----HHHHHHHHHHHTTCSEEEECCS----C--CCHHHHHHHHHHHHHH-TCEE
T ss_pred EEeeCCHHHHhhcCCCCEEEEecCHH----HHHHHHHHHHHCCCCEEEEECC----C--CCHHHHHHHHHHHHHc-CCEE
Confidence 34455666666533455444433221 3456777777778886665333 3 2566788999999999 9998
Q ss_pred EEeccccc
Q 012124 265 LSDEIYEH 272 (470)
Q Consensus 265 I~Dd~~~~ 272 (470)
+-..+.+.
T Consensus 119 igPNc~Gi 126 (288)
T 1oi7_A 119 IGGNCPGI 126 (288)
T ss_dssp EESSSCEE
T ss_pred EeCCCCeE
Confidence 87776544
No 459
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=46.54 E-value=1.2 Score=34.30 Aligned_cols=29 Identities=7% Similarity=-0.231 Sum_probs=26.5
Q ss_pred CCCCcccc-CCcccc---ccccccccchhhhhh
Q 012124 26 QIPGSVSF-PSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 26 ~R~La~~l-~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
..+|++.+ |+|.+| -.++|++.|+|+.++
T Consensus 45 ~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~ 77 (111)
T 3df8_A 45 FNDIRSSIPGISSTILSRRIKDLIDSGLVERRS 77 (111)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHCCCEEEee
Confidence 57999999 999999 999999999998764
No 460
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=46.49 E-value=59 Score=28.56 Aligned_cols=92 Identities=13% Similarity=0.116 Sum_probs=53.0
Q ss_pred CcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC--CceEEE
Q 012124 155 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE--KSRLLI 232 (470)
Q Consensus 155 ~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~--~~~~i~ 232 (470)
..++||.|++..=..+.+.|.+.|-.|++.+-.-... ....+.++..+..|- -|.+.+++.+++ +.. ++
T Consensus 12 K~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~---~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~g~iD-iL 82 (242)
T 4b79_A 12 QQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGV---HAPRHPRIRREELDI-----TDSQRLQRLFEALPRLD-VL 82 (242)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTST---TSCCCTTEEEEECCT-----TCHHHHHHHHHHCSCCS-EE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH---hhhhcCCeEEEEecC-----CCHHHHHHHHHhcCCCC-EE
Confidence 4556666665555566677888998887755332221 123445555665542 255666666643 344 44
Q ss_pred EcCC-CCCcccCCCHHHHHHHHHH
Q 012124 233 LCSP-SNPTGSVYPKNLLDEIARI 255 (470)
Q Consensus 233 l~~p-~nPtG~~~s~~~~~~l~~~ 255 (470)
+++. -+.....++.++|+++.++
T Consensus 83 VNNAGi~~~~~~~~~~~w~~~~~v 106 (242)
T 4b79_A 83 VNNAGISRDREEYDLATFERVLRL 106 (242)
T ss_dssp EECCCCCCGGGGGSHHHHHHHHHH
T ss_pred EECCCCCCCcccCCHHHHHHHHHH
Confidence 5554 3333456788888888875
No 461
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=46.37 E-value=1.2 Score=38.86 Aligned_cols=29 Identities=10% Similarity=-0.107 Sum_probs=26.6
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
++.+||..+|+||.| +..+|+++|+|+..
T Consensus 179 t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 210 (227)
T 3d0s_A 179 TQEEIAQLVGASRETVNKALADFAHRGWIRLE 210 (227)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHhCCcHHHHHHHHHHHHHCCCEEec
Confidence 577899999999999 99999999999765
No 462
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=46.32 E-value=0.8 Score=35.99 Aligned_cols=30 Identities=3% Similarity=-0.155 Sum_probs=27.1
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
+..+||+.+|+|++| ..+.|++.|+|..+.
T Consensus 61 s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~ 93 (122)
T 1r1t_A 61 CVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRK 93 (122)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 577999999999999 889999999998764
No 463
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=46.31 E-value=86 Score=27.40 Aligned_cols=97 Identities=12% Similarity=-0.029 Sum_probs=51.5
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH---HHHcCCEEEEecCcCCCCCccCHHhHhhhcc----
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM---ARIADATPVILPTRISENFLLDPKVLESKLT---- 225 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---- 225 (470)
....++||.|+...=..+.+.|.+.|..|++.+-.-...... ++..|.++..+..|- -|.+.++++++
T Consensus 8 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~~~~~~~~~~~ 82 (260)
T 2ae2_A 8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDL-----SSRSERQELMNTVAN 82 (260)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCT-----TCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCC-----CCHHHHHHHHHHHHH
Confidence 344577776665555566677888898877654321111222 223466776666543 25566655553
Q ss_pred ---CCceEEEEcCCCCCcc--cCCCHHHHHHHHH
Q 012124 226 ---EKSRLLILCSPSNPTG--SVYPKNLLDEIAR 254 (470)
Q Consensus 226 ---~~~~~i~l~~p~nPtG--~~~s~~~~~~l~~ 254 (470)
.+...++-+....+.+ ..++.+++++..+
T Consensus 83 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 116 (260)
T 2ae2_A 83 HFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMS 116 (260)
T ss_dssp HTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred HcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHH
Confidence 3455554433322222 2456677766555
No 464
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=46.27 E-value=0.88 Score=32.57 Aligned_cols=28 Identities=0% Similarity=-0.261 Sum_probs=25.1
Q ss_pred CCCCccccCCccc-c---ccccccccchhhhh
Q 012124 26 QIPGSVSFPSRYL-H---NFNLNNDRRVLRVM 53 (470)
Q Consensus 26 ~R~La~~l~vs~~-T---Ay~~L~~~G~i~s~ 53 (470)
..+||+.||++.. + ....|+++|+|+..
T Consensus 28 a~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~ 59 (79)
T 1xmk_A 28 ALNLAKNIGLTKARDINAVLIDMERQGDVYRQ 59 (79)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHCCCEEec
Confidence 5689999999999 7 99999999999854
No 465
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=46.22 E-value=66 Score=28.99 Aligned_cols=98 Identities=5% Similarity=0.095 Sum_probs=53.6
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCC-------C--CCh------HHHHHHcCCEEEEecCcCCCCCccCH
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPF-------W--VSY------PEMARIADATPVILPTRISENFLLDP 217 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~-------y--~~~------~~~~~~~g~~~~~v~~~~~~~~~~d~ 217 (470)
....++||.|+...=..+.+.|.+.|..|++.+-. . ... ...++..|.++..+..|- -|.
T Consensus 27 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~ 101 (299)
T 3t7c_A 27 EGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDV-----RDF 101 (299)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCT-----TCH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCC-----CCH
Confidence 44456666666555555667788899888764322 0 001 122345677777777653 255
Q ss_pred HhHhhhcc------CCceEEEEcCCCCCcc---cCCCHHHHHHHHHH
Q 012124 218 KVLESKLT------EKSRLLILCSPSNPTG---SVYPKNLLDEIARI 255 (470)
Q Consensus 218 ~~l~~~l~------~~~~~i~l~~p~nPtG---~~~s~~~~~~l~~~ 255 (470)
+.++++++ .+...++.+....+.+ ..++.+++++..+.
T Consensus 102 ~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~v 148 (299)
T 3t7c_A 102 DAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDV 148 (299)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHH
Confidence 66655553 2455554443322222 24577777777663
No 466
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Probab=46.12 E-value=1.1e+02 Score=26.48 Aligned_cols=95 Identities=13% Similarity=0.094 Sum_probs=49.9
Q ss_pred CcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCC-ChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------C
Q 012124 155 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWV-SYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------K 227 (470)
Q Consensus 155 ~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~-~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~ 227 (470)
..++||.|+...=..+.+.|.+.|..|++.+-.-. .....+...|.++..+..|- -|.+.++++++. +
T Consensus 5 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~D~-----~~~~~v~~~~~~~~~~~g~ 79 (255)
T 2q2v_A 5 KTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPAPALAEIARHGVKAVHHPADL-----SDVAQIEALFALAEREFGG 79 (255)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTSCCEEEECCCT-----TSHHHHHHHHHHHHHHHSS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhcCCceEEEeCCC-----CCHHHHHHHHHHHHHHcCC
Confidence 35666665555445566777888988776543222 11122233466666666542 255666665541 4
Q ss_pred ceEEEEcCCCCCcc--cCCCHHHHHHHHH
Q 012124 228 SRLLILCSPSNPTG--SVYPKNLLDEIAR 254 (470)
Q Consensus 228 ~~~i~l~~p~nPtG--~~~s~~~~~~l~~ 254 (470)
...++.+....+.+ ..++.++++++.+
T Consensus 80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 108 (255)
T 2q2v_A 80 VDILVNNAGIQHVAPVEQFPLESWDKIIA 108 (255)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHH
Confidence 55555443322222 2356666666554
No 467
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=46.07 E-value=0.99 Score=36.72 Aligned_cols=30 Identities=7% Similarity=-0.212 Sum_probs=27.4
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
+..+|++.+++|++| ..++|+++|+|+.++
T Consensus 39 ~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~ 71 (146)
T 2f2e_A 39 RFGEFQKSLGLAKNILAARLRNLVEHGVMVAVP 71 (146)
T ss_dssp SHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 567999999999999 999999999998775
No 468
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=45.85 E-value=91 Score=27.69 Aligned_cols=98 Identities=10% Similarity=0.103 Sum_probs=54.0
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH---HHHcCCEEEEecCcCCCCCccCHHhHhhhccC---
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM---ARIADATPVILPTRISENFLLDPKVLESKLTE--- 226 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~--- 226 (470)
....++||.|+...=..+.+.|.+.|..|++.+-.-...... ++..|.++..+..|- -|.+.+++.++.
T Consensus 31 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl-----~d~~~v~~~~~~~~~ 105 (276)
T 3r1i_A 31 SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDV-----TQPDQVRGMLDQMTG 105 (276)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCT-----TCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCC-----CCHHHHHHHHHHHHH
Confidence 445667776665555566677888898887765433333332 334555666665542 255666555532
Q ss_pred ---CceEEEEcCCCCCcc--cCCCHHHHHHHHHH
Q 012124 227 ---KSRLLILCSPSNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 227 ---~~~~i~l~~p~nPtG--~~~s~~~~~~l~~~ 255 (470)
+...++.+....+.+ ..++.++++++.+.
T Consensus 106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~ 139 (276)
T 3r1i_A 106 ELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDT 139 (276)
T ss_dssp HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 455555443322222 24577777776653
No 469
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}
Probab=45.80 E-value=1.8e+02 Score=26.77 Aligned_cols=96 Identities=10% Similarity=0.095 Sum_probs=52.8
Q ss_pred CCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCC----------hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhh
Q 012124 154 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS----------YPEMARIADATPVILPTRISENFLLDPKVLESK 223 (470)
Q Consensus 154 ~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~----------~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 223 (470)
...++||.|+...=..+.+.|.+.|..|++..-.-.. ....++..|.++..+..|- -|.+.++++
T Consensus 45 gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv-----~d~~~v~~~ 119 (346)
T 3kvo_A 45 GCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDV-----RDEQQISAA 119 (346)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCT-----TCHHHHHHH
T ss_pred CCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccC-----CCHHHHHHH
Confidence 3446666555544455667788889877765332221 2233455688888877653 255666555
Q ss_pred cc------CCceEEEEcCCCCCcc--cCCCHHHHHHHHH
Q 012124 224 LT------EKSRLLILCSPSNPTG--SVYPKNLLDEIAR 254 (470)
Q Consensus 224 l~------~~~~~i~l~~p~nPtG--~~~s~~~~~~l~~ 254 (470)
++ .+...++.+......+ ...+.++++++.+
T Consensus 120 ~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~ 158 (346)
T 3kvo_A 120 VEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMN 158 (346)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 53 2455554443322212 3456677766554
No 470
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=45.74 E-value=50 Score=20.56 Aligned_cols=29 Identities=21% Similarity=0.119 Sum_probs=24.6
Q ss_pred cEEEEeec-CHHHHHHHHHHHHHHHHhhCC
Q 012124 438 CIRISYAA-SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 438 ~iRls~~~-~~~~i~~~l~~l~~~l~~~~~ 466 (470)
.+|+|+.. +..+-+++...|-+++.++..
T Consensus 3 rvrisitartkkeaekfaailikvfaelgy 32 (62)
T 2gjh_A 3 RVRISITARTKKEAEKFAAILIKVFAELGY 32 (62)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEEEEecchhHHHHHHHHHHHHHHHhCc
Confidence 58999988 888889999888888887765
No 471
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=45.08 E-value=1.1 Score=38.77 Aligned_cols=31 Identities=10% Similarity=-0.201 Sum_probs=28.0
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.++.+||+.++++++| ..+.|+++|||+..+
T Consensus 63 ~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~ 96 (207)
T 2fxa_A 63 ASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSK 96 (207)
T ss_dssp EEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 4688999999999999 999999999998764
No 472
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=44.80 E-value=1.3 Score=39.36 Aligned_cols=29 Identities=7% Similarity=-0.127 Sum_probs=27.1
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
++.+||..+|+||.| +..+|+++|+|+..
T Consensus 179 t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~ 210 (250)
T 3e6c_C 179 SQKSIGEITGVHHVTVSRVLASLKRENILDKK 210 (250)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeC
Confidence 678999999999999 99999999999876
No 473
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=44.78 E-value=1.6 Score=38.97 Aligned_cols=36 Identities=6% Similarity=-0.109 Sum_probs=30.0
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
.+..+||+.+|++++| -.+.|+++|||+.. . .|.|.
T Consensus 24 ~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~-~-~~~Y~ 62 (249)
T 1mkm_A 24 VSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK-K-DKRYV 62 (249)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC-T-TSCEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC-C-CCcEE
Confidence 4688999999999999 78889999999877 4 45543
No 474
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=44.61 E-value=35 Score=29.73 Aligned_cols=77 Identities=10% Similarity=0.068 Sum_probs=42.5
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC--CceE
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE--KSRL 230 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~--~~~~ 230 (470)
....|+||.|+...=..+.+.|.+.|..|++.+-.-.......+..+.++..+..|. -|.+.+++.+++ +...
T Consensus 13 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~~~~~~~~~~~id~ 87 (249)
T 3f9i_A 13 TGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNL-----ANKEECSNLISKTSNLDI 87 (249)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCT-----TSHHHHHHHHHTCSCCSE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCC-----CCHHHHHHHHHhcCCCCE
Confidence 444566666665544556677888898888765433333334444444444444432 256666666643 4555
Q ss_pred EEEc
Q 012124 231 LILC 234 (470)
Q Consensus 231 i~l~ 234 (470)
++.+
T Consensus 88 li~~ 91 (249)
T 3f9i_A 88 LVCN 91 (249)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 5443
No 475
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=44.35 E-value=79 Score=26.63 Aligned_cols=93 Identities=10% Similarity=0.019 Sum_probs=48.7
Q ss_pred cEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccC-HHhHhhhccCCceEEEEc
Q 012124 156 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLD-PKVLESKLTEKSRLLILC 234 (470)
Q Consensus 156 ~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d-~~~l~~~l~~~~~~i~l~ 234 (470)
.|+||.++...=..++..|++.|..|.+.+-.-.... ...+++++..++ -| .+.+.++++ +..+|+.+
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~---~~~~~~~~~~D~-------~d~~~~~~~~~~-~~d~vi~~ 70 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVP---QYNNVKAVHFDV-------DWTPEEMAKQLH-GMDAIINV 70 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSC---CCTTEEEEECCT-------TSCHHHHHTTTT-TCSEEEEC
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchh---hcCCceEEEecc-------cCCHHHHHHHHc-CCCEEEEC
Confidence 3677765544445567778888877765432211111 113445444443 25 788888876 46666654
Q ss_pred CC-CCCcccCCCHHHHHHHHHHHHhC
Q 012124 235 SP-SNPTGSVYPKNLLDEIARIVAKH 259 (470)
Q Consensus 235 ~p-~nPtG~~~s~~~~~~l~~~~~~~ 259 (470)
.. ..+.-......-...+++.|++.
T Consensus 71 ag~~~~~~~~~n~~~~~~l~~a~~~~ 96 (219)
T 3dqp_A 71 SGSGGKSLLKVDLYGAVKLMQAAEKA 96 (219)
T ss_dssp CCCTTSSCCCCCCHHHHHHHHHHHHT
T ss_pred CcCCCCCcEeEeHHHHHHHHHHHHHh
Confidence 43 22222222333345666666655
No 476
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=44.27 E-value=65 Score=29.81 Aligned_cols=38 Identities=24% Similarity=0.129 Sum_probs=32.4
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccc
Q 012124 236 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII 274 (470)
Q Consensus 236 p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~ 274 (470)
..+|.|-..+.+++.++++.|+++ |+.|+.|-.|++..
T Consensus 49 w~~P~~g~~~~~~~~~~~~~A~~~-GlkV~ld~Hysd~W 86 (332)
T 1hjs_A 49 WVNPADGNYNLDYNIAIAKRAKAA-GLGVYIDFHYSDTW 86 (332)
T ss_dssp CSSCTTCTTSHHHHHHHHHHHHHT-TCEEEEEECCSSSC
T ss_pred eeCCCCCcCCHHHHHHHHHHHHHC-CCEEEEEeccCCCc
Confidence 467888888999999999999999 99999997676543
No 477
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=44.11 E-value=70 Score=28.07 Aligned_cols=95 Identities=12% Similarity=0.045 Sum_probs=52.0
Q ss_pred CcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH---HHHcCCEEEEecCcCCCCCccCHHhHhhhccC-----
Q 012124 155 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM---ARIADATPVILPTRISENFLLDPKVLESKLTE----- 226 (470)
Q Consensus 155 ~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----- 226 (470)
..++||.|+...-..+.+.|.+.|..|++.+-.-...... +...|.++..+..|-. |.+.+++.++.
T Consensus 30 k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-----~~~~v~~~~~~~~~~~ 104 (262)
T 3rkr_A 30 QVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLS-----HSDAIAAFATGVLAAH 104 (262)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTT-----CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCC-----CHHHHHHHHHHHHHhc
Confidence 4566665555444456667788898887765432222222 3345777777776432 55665555432
Q ss_pred -CceEEEEcCCC-CCcc--cCCCHHHHHHHHH
Q 012124 227 -KSRLLILCSPS-NPTG--SVYPKNLLDEIAR 254 (470)
Q Consensus 227 -~~~~i~l~~p~-nPtG--~~~s~~~~~~l~~ 254 (470)
+...++.+... .+.+ ..++.+++++..+
T Consensus 105 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~ 136 (262)
T 3rkr_A 105 GRCDVLVNNAGVGWFGGPLHTMKPAEWDALIA 136 (262)
T ss_dssp SCCSEEEECCCCCCCSSCGGGSCHHHHHHHHH
T ss_pred CCCCEEEECCCccCCCCCcccCCHHHHHHHHH
Confidence 45655544432 2322 2357677766655
No 478
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=44.10 E-value=54 Score=29.06 Aligned_cols=95 Identities=7% Similarity=0.022 Sum_probs=55.7
Q ss_pred CcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH---HHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-----
Q 012124 155 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE---MARIADATPVILPTRISENFLLDPKVLESKLTE----- 226 (470)
Q Consensus 155 ~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----- 226 (470)
.-++||.|++..=..+.+.|.+.|-.|++.+-.-..... -++..|.++..+..|-. |.+.+++.++.
T Consensus 8 KvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt-----~~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 8 KVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVS-----KKKDVEEFVRRTFETY 82 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT-----SHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCC-----CHHHHHHHHHHHHHHc
Confidence 345555555544455566778899888876543222222 24557888888877532 55666555532
Q ss_pred -CceEEEEcCC--CCCcc--cCCCHHHHHHHHHH
Q 012124 227 -KSRLLILCSP--SNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 227 -~~~~i~l~~p--~nPtG--~~~s~~~~~~l~~~ 255 (470)
+.. +++++. ..+.+ ..++.++|+++.+.
T Consensus 83 G~iD-iLVNNAGi~~~~~~~~~~~~e~~~~~~~v 115 (254)
T 4fn4_A 83 SRID-VLCNNAGIMDGVTPVAEVSDELWERVLAV 115 (254)
T ss_dssp SCCC-EEEECCCCCCTTCCGGGCCHHHHHHHHHH
T ss_pred CCCC-EEEECCcccCCCCChhhCCHHHHHHHHHH
Confidence 344 445554 23333 35788999888875
No 479
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=43.81 E-value=73 Score=27.89 Aligned_cols=97 Identities=8% Similarity=0.065 Sum_probs=49.7
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHH---c-CCEEEEecCcCCCCCccCHHhHhhhcc---
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI---A-DATPVILPTRISENFLLDPKVLESKLT--- 225 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~---~-g~~~~~v~~~~~~~~~~d~~~l~~~l~--- 225 (470)
....++||.|+...=..+.+.|.+.|..|++.+-.-.......+. . |.++..+..|- -|.+.++++++
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~-----~~~~~~~~~~~~~~ 80 (263)
T 3ai3_A 6 SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDV-----ATPEGVDAVVESVR 80 (263)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCT-----TSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCC-----CCHHHHHHHHHHHH
Confidence 334567776665555566677888898877654321111222221 1 66666666542 25566655553
Q ss_pred ---CCceEEEEcCCCCCcc--cCCCHHHHHHHHH
Q 012124 226 ---EKSRLLILCSPSNPTG--SVYPKNLLDEIAR 254 (470)
Q Consensus 226 ---~~~~~i~l~~p~nPtG--~~~s~~~~~~l~~ 254 (470)
.+...++.+....+.+ ...+.+++++..+
T Consensus 81 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 114 (263)
T 3ai3_A 81 SSFGGADILVNNAGTGSNETIMEAADEKWQFYWE 114 (263)
T ss_dssp HHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHH
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 1455555433322222 2346666665554
No 480
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=43.78 E-value=1.8 Score=32.57 Aligned_cols=15 Identities=7% Similarity=-0.155 Sum_probs=14.1
Q ss_pred CCCCCccccCCcccc
Q 012124 25 AQIPGSVSFPSRYLH 39 (470)
Q Consensus 25 s~R~La~~l~vs~~T 39 (470)
|+|++|+.||+|++|
T Consensus 60 TQREIA~~lGiS~st 74 (101)
T 1jhg_A 60 SQRELKNELGAGIAT 74 (101)
T ss_dssp CHHHHHHHHCCCHHH
T ss_pred CHHHHHHHHCCChhh
Confidence 599999999999998
No 481
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=43.76 E-value=44 Score=29.76 Aligned_cols=98 Identities=9% Similarity=0.106 Sum_probs=53.2
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCC--------CC--C---hH---HHHHHcCCEEEEecCcCCCCCccC
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPF--------WV--S---YP---EMARIADATPVILPTRISENFLLD 216 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~--------y~--~---~~---~~~~~~g~~~~~v~~~~~~~~~~d 216 (470)
....++||.|+...=..+.+.|.+.|..|++.+-. +. . .. ..++..+.++..+..|- -|
T Consensus 10 ~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-----~~ 84 (277)
T 3tsc_A 10 EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDT-----RD 84 (277)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCT-----TC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCC-----CC
Confidence 33456666666555556677788889888764321 10 1 11 12334566777776643 25
Q ss_pred HHhHhhhccC------CceEEEEcCCCCCcc--cCCCHHHHHHHHHH
Q 012124 217 PKVLESKLTE------KSRLLILCSPSNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 217 ~~~l~~~l~~------~~~~i~l~~p~nPtG--~~~s~~~~~~l~~~ 255 (470)
.+.+++.++. +...++.+....+.+ ..++.+++++..+.
T Consensus 85 ~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~v 131 (277)
T 3tsc_A 85 FDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDI 131 (277)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 6666665532 455554443322222 24577777776664
No 482
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=43.73 E-value=68 Score=27.87 Aligned_cols=96 Identities=13% Similarity=0.064 Sum_probs=51.0
Q ss_pred CcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH---HHHcCCEEEEecCcCCCCCccCHHhHhhhcc------
Q 012124 155 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM---ARIADATPVILPTRISENFLLDPKVLESKLT------ 225 (470)
Q Consensus 155 ~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~------ 225 (470)
..++||.|+...=..+.+.|.+.|..|++.+-.-...... ++..|.++..+..|- -|.+.++++++
T Consensus 8 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv-----~~~~~~~~~~~~~~~~~ 82 (247)
T 2jah_A 8 KVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDV-----ADRQGVDAAVASTVEAL 82 (247)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCT-----TCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCC-----CCHHHHHHHHHHHHHHc
Confidence 4567776665555566677888898777654321112222 223366666666542 25566655553
Q ss_pred CCceEEEEcCCCCCcc--cCCCHHHHHHHHHH
Q 012124 226 EKSRLLILCSPSNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 226 ~~~~~i~l~~p~nPtG--~~~s~~~~~~l~~~ 255 (470)
.+...++.+....+.+ ..++.++++++.+.
T Consensus 83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 114 (247)
T 2jah_A 83 GGLDILVNNAGIMLLGPVEDADTTDWTRMIDT 114 (247)
T ss_dssp SCCSEEEECCCCCCCCCSTTCCHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHHH
Confidence 2455555443322222 23566777666653
No 483
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=43.54 E-value=70 Score=28.30 Aligned_cols=95 Identities=11% Similarity=0.100 Sum_probs=51.2
Q ss_pred cEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH---HHHcCCEEEEecCcCCCCCccCHHhHhhhcc------C
Q 012124 156 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM---ARIADATPVILPTRISENFLLDPKVLESKLT------E 226 (470)
Q Consensus 156 ~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~------~ 226 (470)
.++||.|+...=..+.+.|.+.|..|++.+-.-...... ++..|.++..+..|-. |.+.++++++ .
T Consensus 6 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~~g 80 (264)
T 3tfo_A 6 VILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVT-----DRHSVAAFAQAAVDTWG 80 (264)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTT-----CHHHHHHHHHHHHHHHS
T ss_pred EEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCC-----CHHHHHHHHHHHHHHcC
Confidence 455555554444456667788898887754332222222 3345777777776432 5555555543 2
Q ss_pred CceEEEEcCCCCCcc--cCCCHHHHHHHHHH
Q 012124 227 KSRLLILCSPSNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG--~~~s~~~~~~l~~~ 255 (470)
+...++-+....+.+ ..++.+++++..+.
T Consensus 81 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~v 111 (264)
T 3tfo_A 81 RIDVLVNNAGVMPLSPLAAVKVDEWERMIDV 111 (264)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 455554443333222 24577777776664
No 484
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=43.52 E-value=2.3 Score=37.25 Aligned_cols=28 Identities=11% Similarity=0.065 Sum_probs=25.1
Q ss_pred CCC-CCCCCccccCCcccc---ccccccccch
Q 012124 22 KIP-AQIPGSVSFPSRYLH---NFNLNNDRRV 49 (470)
Q Consensus 22 ~lP-s~R~La~~l~vs~~T---Ay~~L~~~G~ 49 (470)
++| ++.+||..+|+||.| +..+|+++|+
T Consensus 176 ~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~gi 207 (237)
T 3fx3_A 176 TLPYDKMLIAGRLGMKPESLSRAFSRLKAAGV 207 (237)
T ss_dssp ECCSCTHHHHHHTTCCHHHHHHHHHHHGGGTE
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHCCe
Confidence 466 567999999999999 9999999995
No 485
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}
Probab=43.47 E-value=60 Score=28.50 Aligned_cols=96 Identities=10% Similarity=0.011 Sum_probs=47.6
Q ss_pred CCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------C
Q 012124 154 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------K 227 (470)
Q Consensus 154 ~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~ 227 (470)
...++||.|+...=..+.+.|.+.|..|++.+-.-.......+....++..+..|- -|.+.++++++. +
T Consensus 12 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-----~d~~~v~~~~~~~~~~~g~ 86 (263)
T 3ak4_A 12 GRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDV-----TKRASVDAAMQKAIDALGG 86 (263)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCTTCCEEEECCT-----TCHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeC-----CCHHHHHHHHHHHHHHcCC
Confidence 34566666655544566677888898887654321122222333322333333321 255666555532 4
Q ss_pred ceEEEEcCCCCCcc--cCCCHHHHHHHHH
Q 012124 228 SRLLILCSPSNPTG--SVYPKNLLDEIAR 254 (470)
Q Consensus 228 ~~~i~l~~p~nPtG--~~~s~~~~~~l~~ 254 (470)
...++.+....+.+ ...+.+++++..+
T Consensus 87 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 115 (263)
T 3ak4_A 87 FDLLCANAGVSTMRPAVDITDEEWDFNFD 115 (263)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHH
Confidence 55555433322222 2356677766655
No 486
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=43.45 E-value=62 Score=29.23 Aligned_cols=97 Identities=8% Similarity=-0.015 Sum_probs=52.9
Q ss_pred CCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH---HHHcCCEEEEecCcCCCCCccCHHhHhhhcc-----
Q 012124 154 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM---ARIADATPVILPTRISENFLLDPKVLESKLT----- 225 (470)
Q Consensus 154 ~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----- 225 (470)
...++||.|+...-..+...|.+.|..|++.+-.-...... ++..|.++..+..|- -|.+.++++++
T Consensus 31 gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~ 105 (301)
T 3tjr_A 31 GRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDV-----RHLDEMVRLADEAFRL 105 (301)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCT-----TCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccC-----CCHHHHHHHHHHHHHh
Confidence 34566666655544556677888898887765432222222 333466776666643 25566655553
Q ss_pred -CCceEEEEcCCCCCcc--cCCCHHHHHHHHHH
Q 012124 226 -EKSRLLILCSPSNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 226 -~~~~~i~l~~p~nPtG--~~~s~~~~~~l~~~ 255 (470)
.+...++.+....+.+ ...+.+++++..+.
T Consensus 106 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~v 138 (301)
T 3tjr_A 106 LGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDI 138 (301)
T ss_dssp HSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred CCCCCEEEECCCcCCCCCcccCCHHHHHHHHHh
Confidence 2455555443322222 24577777766653
No 487
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=43.30 E-value=51 Score=29.07 Aligned_cols=93 Identities=16% Similarity=0.140 Sum_probs=52.9
Q ss_pred cEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------Cce
Q 012124 156 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSR 229 (470)
Q Consensus 156 ~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~ 229 (470)
.++||.|++..=..+.+.|.+.|-.|++.+-.-..... +...+.+...+..|- -|.+.+++.++. +..
T Consensus 4 ~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~-~~~~~~~~~~~~~Dv-----~~~~~v~~~v~~~~~~~g~iD 77 (247)
T 3ged_A 4 GVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSAD-FAKERPNLFYFHGDV-----ADPLTLKKFVEYAMEKLQRID 77 (247)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHTTCTTEEEEECCT-----TSHHHHHHHHHHHHHHHSCCC
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHhcCCEEEEEecC-----CCHHHHHHHHHHHHHHcCCCC
Confidence 46777666666666777888999888876543211222 223445566666542 255555554431 444
Q ss_pred EEEEcCC-CCCcc--cCCCHHHHHHHHHH
Q 012124 230 LLILCSP-SNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 230 ~i~l~~p-~nPtG--~~~s~~~~~~l~~~ 255 (470)
.+ +++. .++.+ ..++.++++++.+.
T Consensus 78 iL-VNNAG~~~~~~~~~~~~e~~~~~~~v 105 (247)
T 3ged_A 78 VL-VNNACRGSKGILSSLLYEEFDYILSV 105 (247)
T ss_dssp EE-EECCCCCCCCGGGTCCHHHHHHHHHH
T ss_pred EE-EECCCCCCCCCcccCCHHHHHHHHHH
Confidence 44 4443 33333 35688888888775
No 488
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=43.29 E-value=46 Score=29.67 Aligned_cols=95 Identities=14% Similarity=0.157 Sum_probs=50.3
Q ss_pred cEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------Cce
Q 012124 156 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSR 229 (470)
Q Consensus 156 ~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~ 229 (470)
.++||.|+...=..+.+.|.+.|..|++.+-.-.......+..+.++..+..|- -|.+.++++++. +..
T Consensus 30 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~d~~~v~~~~~~~~~~~g~iD 104 (272)
T 4dyv_A 30 IAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTDV-----TDPDSVRALFTATVEKFGRVD 104 (272)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEEEECCT-----TSHHHHHHHHHHHHHHHSCCC
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEecC-----CCHHHHHHHHHHHHHHcCCCC
Confidence 345554444444455667788898887765433233344455555555555532 255665555531 455
Q ss_pred EEEEcCCC-CCcc--cCCCHHHHHHHHHH
Q 012124 230 LLILCSPS-NPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 230 ~i~l~~p~-nPtG--~~~s~~~~~~l~~~ 255 (470)
.++-+... .+.+ ..++.+++++..+.
T Consensus 105 ~lVnnAg~~~~~~~~~~~~~~~~~~~~~v 133 (272)
T 4dyv_A 105 VLFNNAGTGAPAIPMEDLTFAQWKQVVDT 133 (272)
T ss_dssp EEEECCCCCCCSSCGGGCCHHHHHHHHHH
T ss_pred EEEECCCCCCCCCChhhCCHHHHHHHHHh
Confidence 55443332 2222 24577777776654
No 489
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=43.14 E-value=1.8 Score=38.18 Aligned_cols=29 Identities=7% Similarity=-0.193 Sum_probs=26.2
Q ss_pred CCCCCccccCCcc-cc---ccccccccchhhhh
Q 012124 25 AQIPGSVSFPSRY-LH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 25 s~R~La~~l~vs~-~T---Ay~~L~~~G~i~s~ 53 (470)
++.+||..+|+|| -| +..+|+++|+|+..
T Consensus 171 t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~ 203 (238)
T 2bgc_A 171 TMQELGYSSGIAHSSAVSRIISKLKQEKVIVYK 203 (238)
T ss_dssp CHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHhCCChHHHHHHHHHHHHHCCCEEec
Confidence 5679999999999 58 99999999999776
No 490
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=43.01 E-value=1.5 Score=39.42 Aligned_cols=29 Identities=3% Similarity=-0.041 Sum_probs=26.6
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
++.+||..+|+||.| +..+|+++|+|+..
T Consensus 219 t~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~ 250 (260)
T 3kcc_A 219 TRQEIGQIVGCSRETVGRILKMLEDQNLISAH 250 (260)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEc
Confidence 467999999999999 99999999999865
No 491
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=42.95 E-value=42 Score=29.85 Aligned_cols=98 Identities=9% Similarity=0.071 Sum_probs=52.7
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCC-Ch---HHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC--
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWV-SY---PEMARIADATPVILPTRISENFLLDPKVLESKLTE-- 226 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~-~~---~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-- 226 (470)
....++||.|+...=..+.+.|.+.|..|++..-.-. .. ...++..|.++..+..|- -|.+.++++++.
T Consensus 27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-----~d~~~v~~~~~~~~ 101 (269)
T 4dmm_A 27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADV-----SQESEVEALFAAVI 101 (269)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCT-----TSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCC-----CCHHHHHHHHHHHH
Confidence 4445666665555445566778888988876432111 11 122344567777776643 255655555432
Q ss_pred ----CceEEEEcCCCCCcc--cCCCHHHHHHHHHH
Q 012124 227 ----KSRLLILCSPSNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 227 ----~~~~i~l~~p~nPtG--~~~s~~~~~~l~~~ 255 (470)
+...++.+....+.+ ..++.+++++..+.
T Consensus 102 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~v 136 (269)
T 4dmm_A 102 ERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDL 136 (269)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 455554443322222 24577777777664
No 492
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=42.93 E-value=1.7e+02 Score=25.65 Aligned_cols=97 Identities=13% Similarity=0.137 Sum_probs=53.6
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCC-------hHH---HHHHcCCEEEEecCcCCCCCccCHHhHhh
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS-------YPE---MARIADATPVILPTRISENFLLDPKVLES 222 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~-------~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 222 (470)
+...++||.|+...=..+.+.|.+.|.+|++.+-.-.. ... .++..|.++..+..|-. |.+.+++
T Consensus 5 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~ 79 (274)
T 3e03_A 5 SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIR-----EEDQVRA 79 (274)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTT-----CHHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCC-----CHHHHHH
Confidence 44456666666555556667788889888765433221 222 23445778877776532 5555555
Q ss_pred hcc------CCceEEEEcCCCCCcc--cCCCHHHHHHHHH
Q 012124 223 KLT------EKSRLLILCSPSNPTG--SVYPKNLLDEIAR 254 (470)
Q Consensus 223 ~l~------~~~~~i~l~~p~nPtG--~~~s~~~~~~l~~ 254 (470)
.++ .+...++.+......+ ...+.+++++..+
T Consensus 80 ~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~ 119 (274)
T 3e03_A 80 AVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQ 119 (274)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHh
Confidence 543 2455554433322222 2457777776665
No 493
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=42.81 E-value=81 Score=27.97 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=53.1
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCC-------C--Ch------HHHHHHcCCEEEEecCcCCCCCccCH
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFW-------V--SY------PEMARIADATPVILPTRISENFLLDP 217 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y-------~--~~------~~~~~~~g~~~~~v~~~~~~~~~~d~ 217 (470)
....++||.|+...=..+.+.|.+.|..|++.+-.- . .. ...++..|.++..+..|- -|.
T Consensus 9 ~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~ 83 (281)
T 3s55_A 9 EGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDV-----KDR 83 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCT-----TCH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCC-----CCH
Confidence 334566666665544566777888898887654321 0 01 122344577777777643 255
Q ss_pred HhHhhhccC------CceEEEEcCCCCCcc--cCCCHHHHHHHHHH
Q 012124 218 KVLESKLTE------KSRLLILCSPSNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 218 ~~l~~~l~~------~~~~i~l~~p~nPtG--~~~s~~~~~~l~~~ 255 (470)
+.+++.++. +...++.+....+.+ ..++.+++++..+.
T Consensus 84 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 129 (281)
T 3s55_A 84 AALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGT 129 (281)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 666555532 455554433322222 34577777766653
No 494
>3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase, hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A* 3vtr_A*
Probab=42.71 E-value=61 Score=32.58 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=39.2
Q ss_pred HHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEE
Q 012124 194 MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 265 (470)
Q Consensus 194 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI 265 (470)
.+...+.+.....+.++.+|.+..+...++-... ....|..++.+++++|++.|+++ ++-||
T Consensus 212 ~mA~~KlN~lH~HltDdqgwrlei~~~P~Lt~~G---------a~~~~~~YT~~di~eiv~yA~~r-gI~VI 273 (572)
T 3ozo_A 212 AMAAVKLNTFHWHITDSQSFPFVTTKRPNLYKFG---------ALSPQKVYTKAAIREVVRFGLER-GVRVL 273 (572)
T ss_dssp HHHHTTCCEEEEECCCSSCCCBCCSSSHHHHHHH---------SSSSSSCBCHHHHHHHHHHHHHT-TCEEE
T ss_pred HHHHcCCceEEEEeecCcCceeccccCcchhccC---------CcCCCCCcCHHHHHHHHHHHHHh-CCcee
Confidence 3445667776666665555555443332221000 01235689999999999999999 99888
No 495
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=42.51 E-value=84 Score=27.17 Aligned_cols=97 Identities=8% Similarity=0.045 Sum_probs=49.7
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH---HHHcCCEEEEecCcCCCCCccCHHhHhhhcc----
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM---ARIADATPVILPTRISENFLLDPKVLESKLT---- 225 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---- 225 (470)
....++||.|+...=..+.+.|.+.|..|++.+-.-...... ++..+.++..+..|- -|.+.++++++
T Consensus 10 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~~~~~~~~~~~ 84 (255)
T 1fmc_A 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDI-----TSEQELSALADFAIS 84 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCT-----TCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCC-----CCHHHHHHHHHHHHH
Confidence 334566665554444556677888898877654321111112 223455666665532 25666666553
Q ss_pred --CCceEEEEcCCCC-CcccCCCHHHHHHHHH
Q 012124 226 --EKSRLLILCSPSN-PTGSVYPKNLLDEIAR 254 (470)
Q Consensus 226 --~~~~~i~l~~p~n-PtG~~~s~~~~~~l~~ 254 (470)
.+...++.+.... +.....+.+++++..+
T Consensus 85 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~ 116 (255)
T 1fmc_A 85 KLGKVDILVNNAGGGGPKPFDMPMADFRRAYE 116 (255)
T ss_dssp HHSSCCEEEECCCCCCCCCTTCCHHHHHHHHH
T ss_pred hcCCCCEEEECCCCCCCCCCCCCHHHHHHHHH
Confidence 2566665444322 2112456666655544
No 496
>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Probab=42.27 E-value=1.3e+02 Score=25.81 Aligned_cols=95 Identities=18% Similarity=0.127 Sum_probs=49.4
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHH-cCCEEEEecCcCCCCCccCHHhHhhhccC--Cce
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI-ADATPVILPTRISENFLLDPKVLESKLTE--KSR 229 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~l~~--~~~ 229 (470)
....++||.|+...=..+.+.|.+.|..|++.+-.-.......+. .+.+++..++ -|.+.+++.++. +..
T Consensus 6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~-------~~~~~~~~~~~~~~~id 78 (244)
T 3d3w_A 6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDL-------GDWEATERALGSVGPVD 78 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCT-------TCHHHHHHHHTTCCCCC
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCCEEEEeC-------CCHHHHHHHHHHcCCCC
Confidence 344677776655555556667778888877654321122222222 2556554333 266777777753 355
Q ss_pred EEEEcCCCCCcc--cCCCHHHHHHHHH
Q 012124 230 LLILCSPSNPTG--SVYPKNLLDEIAR 254 (470)
Q Consensus 230 ~i~l~~p~nPtG--~~~s~~~~~~l~~ 254 (470)
.++.+......+ ...+.+++++..+
T Consensus 79 ~vi~~Ag~~~~~~~~~~~~~~~~~~~~ 105 (244)
T 3d3w_A 79 LLVNNAAVALLQPFLEVTKEAFDRSFE 105 (244)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred EEEECCccCCCcchhhCCHHHHHHHHH
Confidence 555433222211 2345566655554
No 497
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=42.19 E-value=1.3e+02 Score=26.62 Aligned_cols=98 Identities=13% Similarity=0.075 Sum_probs=51.9
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH---HHHcCCEEEEecCcCCCCCccCHHhHhhhcc----
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM---ARIADATPVILPTRISENFLLDPKVLESKLT---- 225 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---- 225 (470)
....++||.|+...=..+.+.|.+.|..|++.+-.-...... ++..|.++..+..|-. |.+.+++.++
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~~~~~~~~~~~ 106 (275)
T 4imr_A 32 RGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLS-----EAGAGTDLIERAEA 106 (275)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTT-----STTHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCC-----CHHHHHHHHHHHHH
Confidence 444566666665555566677888898887755433333333 3345667766666532 3333333322
Q ss_pred -CCceEEEEcCCCCCcc--cCCCHHHHHHHHHH
Q 012124 226 -EKSRLLILCSPSNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 226 -~~~~~i~l~~p~nPtG--~~~s~~~~~~l~~~ 255 (470)
.+...++.+....+.+ ..++.+++++..+.
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~v 139 (275)
T 4imr_A 107 IAPVDILVINASAQINATLSALTPNDLAFQLAV 139 (275)
T ss_dssp HSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 2455554433322222 24577777766653
No 498
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}
Probab=42.19 E-value=64 Score=29.46 Aligned_cols=96 Identities=10% Similarity=0.041 Sum_probs=52.5
Q ss_pred CcEEEecChHHHHHHHHHHhcCCCCeEEEcCCC----------CCChH---HHHHHcCCEEEEecCcCCCCCccCHHhHh
Q 012124 155 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPF----------WVSYP---EMARIADATPVILPTRISENFLLDPKVLE 221 (470)
Q Consensus 155 ~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~----------y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~ 221 (470)
..++||.|+...=..+.+.|.+.|..|++.+-. -.... ..+...|.++..+..|- -|.+.++
T Consensus 28 k~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~d~~~v~ 102 (322)
T 3qlj_A 28 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNV-----ADWDQAA 102 (322)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCT-----TSHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCC-----CCHHHHH
Confidence 345566555544445666788889888775432 11222 22345677887777653 2556665
Q ss_pred hhccC------CceEEEEcCCCCCcc--cCCCHHHHHHHHHH
Q 012124 222 SKLTE------KSRLLILCSPSNPTG--SVYPKNLLDEIARI 255 (470)
Q Consensus 222 ~~l~~------~~~~i~l~~p~nPtG--~~~s~~~~~~l~~~ 255 (470)
+.++. +...++.+......+ ..++.+++++..+.
T Consensus 103 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~v 144 (322)
T 3qlj_A 103 GLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAV 144 (322)
T ss_dssp HHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 55532 455444333322222 24577777776664
No 499
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Probab=42.17 E-value=64 Score=28.35 Aligned_cols=95 Identities=17% Similarity=0.120 Sum_probs=47.6
Q ss_pred CcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------Cc
Q 012124 155 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KS 228 (470)
Q Consensus 155 ~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~ 228 (470)
..++||.|+...=..+.+.|.+.|..|++.+-.-.......+..+.++..+..|- -|.+.++++++. +.
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~v~~~~~~~~~~~g~i 82 (260)
T 1nff_A 8 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDV-----TQPAQWKAAVDTAVTAFGGL 82 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCT-----TCHHHHHHHHHHHHHHHSCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcCceEEEecC-----CCHHHHHHHHHHHHHHcCCC
Confidence 4566666555544556677788898887654321122222333332344444432 255666655531 45
Q ss_pred eEEEEcCCCCCcc--cCCCHHHHHHHHH
Q 012124 229 RLLILCSPSNPTG--SVYPKNLLDEIAR 254 (470)
Q Consensus 229 ~~i~l~~p~nPtG--~~~s~~~~~~l~~ 254 (470)
..++.+......+ ...+.+++++..+
T Consensus 83 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 110 (260)
T 1nff_A 83 HVLVNNAGILNIGTIEDYALTEWQRILD 110 (260)
T ss_dssp CEEEECCCCCCCBCTTTSCHHHHHHHHH
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHH
Confidence 5555443322222 2356666666555
No 500
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=42.05 E-value=79 Score=27.41 Aligned_cols=97 Identities=8% Similarity=0.014 Sum_probs=52.6
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH---HHHcCCEEEEecCcCCCCCccCHHhHhhhcc----
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM---ARIADATPVILPTRISENFLLDPKVLESKLT---- 225 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---- 225 (470)
....++||.|+...=..+.+.|.+.|..|++.+-.-...... ++..+.++..+..|- -|.+.+++.++
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~~~~~~~~~~~ 82 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDV-----SDPESAKAMADRTLA 82 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCT-----TSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccC-----CCHHHHHHHHHHHHH
Confidence 444566766665555566777888898887755432222222 233477777777643 25555555543
Q ss_pred --CCceEEEEcCCC---CCcc--cCCCHHHHHHHHH
Q 012124 226 --EKSRLLILCSPS---NPTG--SVYPKNLLDEIAR 254 (470)
Q Consensus 226 --~~~~~i~l~~p~---nPtG--~~~s~~~~~~l~~ 254 (470)
.+...++.+... .+.+ ..++.+++++..+
T Consensus 83 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~ 118 (253)
T 3qiv_A 83 EFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMS 118 (253)
T ss_dssp HHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHH
T ss_pred HcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHh
Confidence 155555543322 1111 2356676666554
Done!