Query 012126
Match_columns 470
No_of_seqs 622 out of 2661
Neff 11.2
Searched_HMMs 46136
Date Thu Mar 28 23:19:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 6.3E-60 1.4E-64 478.2 49.6 393 62-455 373-798 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 9E-59 1.9E-63 469.8 49.4 380 74-457 352-765 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.4E-54 3E-59 436.6 42.3 381 62-458 90-506 (697)
4 PLN03081 pentatricopeptide (PP 100.0 5.2E-53 1.1E-57 425.2 37.4 373 62-453 126-535 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 1.2E-51 2.6E-56 425.0 37.8 374 61-454 224-597 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 2.8E-51 6E-56 422.3 39.5 385 58-456 252-667 (857)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 2.8E-23 6E-28 218.6 46.6 366 63-442 503-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 5.5E-23 1.2E-27 216.3 46.1 361 66-439 438-831 (899)
9 PRK11788 tetratricopeptide rep 99.9 1.4E-21 3E-26 185.1 36.3 302 140-449 45-356 (389)
10 PRK11788 tetratricopeptide rep 99.9 5.3E-21 1.2E-25 181.1 34.7 302 103-412 43-354 (389)
11 TIGR00990 3a0801s09 mitochondr 99.9 2E-18 4.3E-23 172.2 47.3 368 65-441 133-572 (615)
12 PRK15174 Vi polysaccharide exp 99.9 1.7E-18 3.7E-23 172.2 43.4 331 64-406 47-382 (656)
13 KOG4626 O-linked N-acetylgluco 99.9 6.2E-20 1.3E-24 167.2 29.8 365 65-446 122-489 (966)
14 PRK15174 Vi polysaccharide exp 99.9 1.9E-18 4.1E-23 171.9 42.8 361 70-441 16-382 (656)
15 KOG4626 O-linked N-acetylgluco 99.9 1.6E-19 3.5E-24 164.6 29.5 366 63-441 52-452 (966)
16 PRK11447 cellulose synthase su 99.9 2.5E-17 5.5E-22 174.9 46.1 361 66-440 276-700 (1157)
17 PRK11447 cellulose synthase su 99.9 5.1E-17 1.1E-21 172.6 44.5 372 61-444 305-745 (1157)
18 PRK10049 pgaA outer membrane p 99.8 3.2E-16 6.9E-21 159.4 46.8 370 66-448 22-462 (765)
19 TIGR00990 3a0801s09 mitochondr 99.8 2.6E-16 5.6E-21 157.1 41.8 342 97-448 129-543 (615)
20 PRK14574 hmsH outer membrane p 99.8 8.5E-15 1.9E-19 146.4 44.1 363 66-438 41-477 (822)
21 PRK10049 pgaA outer membrane p 99.8 4.9E-15 1.1E-19 150.7 42.5 355 92-456 12-436 (765)
22 PRK14574 hmsH outer membrane p 99.8 2.8E-14 6.1E-19 142.8 44.5 373 64-447 73-518 (822)
23 KOG4422 Uncharacterized conser 99.7 8.5E-14 1.8E-18 122.3 35.4 376 70-453 126-565 (625)
24 KOG4422 Uncharacterized conser 99.7 1E-13 2.2E-18 121.8 34.3 345 92-442 204-592 (625)
25 PRK09782 bacteriophage N4 rece 99.7 1.3E-12 2.8E-17 133.8 44.5 365 66-450 320-714 (987)
26 PRK10747 putative protoheme IX 99.7 2.7E-13 5.9E-18 127.5 35.2 285 143-440 97-390 (398)
27 TIGR00540 hemY_coli hemY prote 99.7 3.3E-13 7.2E-18 127.6 33.9 292 141-439 95-398 (409)
28 KOG2076 RNA polymerase III tra 99.7 2.4E-12 5.2E-17 123.4 38.9 364 69-439 149-554 (895)
29 PRK09782 bacteriophage N4 rece 99.7 4.3E-12 9.4E-17 129.9 42.5 360 72-447 355-745 (987)
30 COG2956 Predicted N-acetylgluc 99.7 8.8E-13 1.9E-17 112.0 30.9 294 143-444 48-351 (389)
31 PF13429 TPR_15: Tetratricopep 99.7 1.3E-15 2.7E-20 136.9 12.6 261 135-403 13-275 (280)
32 PRK10747 putative protoheme IX 99.6 2.2E-12 4.8E-17 121.3 33.4 284 108-404 97-389 (398)
33 TIGR00540 hemY_coli hemY prote 99.6 3.2E-12 6.9E-17 120.9 32.4 290 106-404 95-398 (409)
34 KOG2076 RNA polymerase III tra 99.6 1.2E-11 2.7E-16 118.6 35.2 331 102-438 146-510 (895)
35 COG3071 HemY Uncharacterized e 99.6 2.2E-11 4.7E-16 106.8 32.9 292 143-446 97-396 (400)
36 KOG1155 Anaphase-promoting com 99.6 3.3E-11 7.1E-16 107.4 34.0 292 137-438 234-534 (559)
37 KOG2002 TPR-containing nuclear 99.6 1.3E-11 2.9E-16 119.3 33.9 387 60-456 308-759 (1018)
38 KOG1126 DNA-binding cell divis 99.6 7.3E-13 1.6E-17 123.1 24.2 201 235-444 420-624 (638)
39 KOG2002 TPR-containing nuclear 99.6 7E-12 1.5E-16 121.2 31.1 380 60-447 271-716 (1018)
40 PF13429 TPR_15: Tetratricopep 99.6 1.5E-14 3.2E-19 130.0 12.3 259 102-368 15-275 (280)
41 KOG2003 TPR repeat-containing 99.6 4.4E-12 9.6E-17 112.5 25.8 200 249-455 503-703 (840)
42 COG2956 Predicted N-acetylgluc 99.6 2.7E-11 5.9E-16 103.1 29.3 223 72-299 48-277 (389)
43 KOG0547 Translocase of outer m 99.6 6.9E-11 1.5E-15 106.0 32.1 361 69-439 125-565 (606)
44 KOG1155 Anaphase-promoting com 99.5 5.3E-11 1.2E-15 106.1 29.4 309 105-440 237-553 (559)
45 COG3071 HemY Uncharacterized e 99.5 2.6E-10 5.6E-15 100.2 32.5 294 101-405 88-390 (400)
46 KOG1126 DNA-binding cell divis 99.5 2.1E-11 4.5E-16 113.6 23.6 287 110-408 334-623 (638)
47 KOG0495 HAT repeat protein [RN 99.5 3.8E-09 8.2E-14 98.4 37.7 335 96-440 517-880 (913)
48 KOG0495 HAT repeat protein [RN 99.5 1.1E-08 2.4E-13 95.4 39.5 360 65-440 382-782 (913)
49 KOG2003 TPR repeat-containing 99.4 5.8E-10 1.3E-14 99.3 29.2 348 69-426 247-709 (840)
50 KOG1915 Cell cycle control pro 99.4 1.1E-08 2.3E-13 91.9 36.9 358 71-441 85-537 (677)
51 PRK12370 invasion protein regu 99.4 2.9E-10 6.4E-15 111.8 29.9 264 165-440 256-535 (553)
52 TIGR02521 type_IV_pilW type IV 99.4 2.3E-10 5.1E-15 99.9 26.4 198 238-439 33-231 (234)
53 TIGR02521 type_IV_pilW type IV 99.4 3.8E-10 8.3E-15 98.6 26.6 201 200-404 30-231 (234)
54 PRK12370 invasion protein regu 99.4 2.6E-10 5.6E-15 112.2 26.6 267 93-371 254-536 (553)
55 KOG1129 TPR repeat-containing 99.4 2.8E-10 6.1E-15 97.1 21.4 231 204-440 226-458 (478)
56 PF12569 NARP1: NMDA receptor- 99.4 3.9E-09 8.5E-14 100.5 30.6 294 66-369 11-333 (517)
57 PF13041 PPR_2: PPR repeat fam 99.3 2.5E-12 5.5E-17 81.4 6.1 49 304-352 1-49 (50)
58 PF12569 NARP1: NMDA receptor- 99.3 8.4E-09 1.8E-13 98.3 32.3 306 102-439 11-333 (517)
59 PF13041 PPR_2: PPR repeat fam 99.3 3.3E-12 7.2E-17 80.9 6.3 49 199-247 1-49 (50)
60 KOG1915 Cell cycle control pro 99.3 9.6E-08 2.1E-12 86.0 36.0 354 71-439 153-584 (677)
61 KOG4318 Bicoid mRNA stability 99.3 2.3E-10 4.9E-15 109.8 19.3 91 116-219 11-101 (1088)
62 KOG1840 Kinesin light chain [C 99.3 1.5E-09 3.3E-14 102.1 23.8 238 201-438 199-477 (508)
63 KOG1173 Anaphase-promoting com 99.3 1.7E-08 3.6E-13 92.8 29.5 211 200-418 311-529 (611)
64 KOG1129 TPR repeat-containing 99.3 2.8E-09 6.1E-14 91.2 22.6 233 166-405 223-458 (478)
65 KOG4318 Bicoid mRNA stability 99.3 3.6E-10 7.9E-15 108.4 18.8 254 151-426 11-286 (1088)
66 cd05804 StaR_like StaR_like; a 99.3 1.3E-07 2.9E-12 88.4 35.0 306 130-440 6-336 (355)
67 KOG3785 Uncharacterized conser 99.2 3.8E-08 8.3E-13 85.3 27.9 362 67-446 30-496 (557)
68 KOG1174 Anaphase-promoting com 99.2 2.7E-07 5.9E-12 81.8 32.9 297 135-440 199-500 (564)
69 KOG1156 N-terminal acetyltrans 99.2 2E-07 4.3E-12 87.2 33.8 97 343-442 373-470 (700)
70 KOG0547 Translocase of outer m 99.2 6.7E-08 1.5E-12 87.3 29.3 349 101-462 121-552 (606)
71 KOG2047 mRNA splicing factor [ 99.2 7.2E-07 1.6E-11 83.5 35.9 363 67-439 110-578 (835)
72 KOG1174 Anaphase-promoting com 99.2 2.8E-07 6.1E-12 81.7 30.9 272 125-406 227-501 (564)
73 KOG1840 Kinesin light chain [C 99.2 2.3E-08 5E-13 94.3 25.3 198 206-403 246-477 (508)
74 PRK11189 lipoprotein NlpI; Pro 99.2 6.1E-08 1.3E-12 87.4 26.9 224 182-415 42-274 (296)
75 KOG1173 Anaphase-promoting com 99.2 9.8E-08 2.1E-12 87.9 27.7 374 66-455 148-531 (611)
76 PRK11189 lipoprotein NlpI; Pro 99.1 4E-08 8.8E-13 88.6 24.5 220 214-442 39-267 (296)
77 KOG4162 Predicted calmodulin-b 99.1 1.3E-06 2.9E-11 83.5 34.0 346 91-441 319-784 (799)
78 KOG1156 N-terminal acetyltrans 99.1 2.3E-06 4.9E-11 80.4 34.8 362 63-439 79-510 (700)
79 PRK04841 transcriptional regul 99.1 1.4E-06 3.1E-11 92.1 37.2 338 104-441 383-761 (903)
80 KOG2376 Signal recognition par 99.1 2.2E-06 4.7E-11 79.6 32.6 370 67-456 20-502 (652)
81 COG3063 PilF Tfp pilus assembl 99.1 2.3E-07 5E-12 76.0 23.4 192 136-332 41-233 (250)
82 KOG4340 Uncharacterized conser 99.1 2.4E-07 5.2E-12 78.6 24.3 290 98-401 13-335 (459)
83 cd05804 StaR_like StaR_like; a 99.1 1.4E-06 3.1E-11 81.4 32.2 202 203-405 116-336 (355)
84 COG3063 PilF Tfp pilus assembl 99.0 2.4E-07 5.2E-12 75.9 22.2 186 67-257 43-228 (250)
85 KOG2047 mRNA splicing factor [ 99.0 1.6E-05 3.4E-10 74.8 36.4 368 64-438 174-613 (835)
86 KOG0624 dsRNA-activated protei 99.0 3.6E-06 7.8E-11 73.1 29.2 304 94-405 37-370 (504)
87 PF04733 Coatomer_E: Coatomer 98.9 2.6E-08 5.5E-13 88.6 14.2 148 280-438 111-263 (290)
88 KOG3785 Uncharacterized conser 98.9 1.6E-06 3.5E-11 75.5 23.3 332 70-414 68-497 (557)
89 KOG4340 Uncharacterized conser 98.9 6.8E-07 1.5E-11 75.9 20.3 294 130-436 10-335 (459)
90 KOG1125 TPR repeat-containing 98.9 1.8E-06 3.9E-11 80.1 23.4 229 58-297 284-524 (579)
91 PF04733 Coatomer_E: Coatomer 98.8 4.1E-07 8.8E-12 81.0 18.6 151 209-370 110-265 (290)
92 KOG1070 rRNA processing protei 98.8 4.4E-06 9.5E-11 85.0 27.1 244 184-436 1443-1696(1710)
93 KOG1125 TPR repeat-containing 98.8 8.5E-07 1.8E-11 82.1 20.5 251 140-398 295-564 (579)
94 PRK14720 transcript cleavage f 98.8 2E-06 4.4E-11 86.3 24.5 59 203-263 118-176 (906)
95 KOG0548 Molecular co-chaperone 98.8 4E-05 8.8E-10 70.8 29.9 362 67-441 10-456 (539)
96 KOG3617 WD40 and TPR repeat-co 98.7 6.6E-06 1.4E-10 79.4 23.8 315 72-438 741-1107(1416)
97 KOG1914 mRNA cleavage and poly 98.7 0.00019 4.2E-09 66.5 34.5 381 52-439 13-500 (656)
98 PF12854 PPR_1: PPR repeat 98.7 1.9E-08 4.2E-13 57.0 4.3 32 301-332 2-33 (34)
99 KOG1070 rRNA processing protei 98.7 4.3E-06 9.2E-11 85.0 23.3 218 224-446 1447-1669(1710)
100 PRK04841 transcriptional regul 98.7 0.00012 2.6E-09 77.7 36.0 305 102-406 416-761 (903)
101 KOG0624 dsRNA-activated protei 98.7 8.7E-05 1.9E-09 64.8 27.8 298 61-371 40-371 (504)
102 PLN02789 farnesyltranstransfer 98.7 3.2E-05 6.9E-10 69.9 26.8 142 171-316 42-186 (320)
103 PLN02789 farnesyltranstransfer 98.7 1.5E-05 3.2E-10 72.1 24.6 147 183-333 125-300 (320)
104 PF12854 PPR_1: PPR repeat 98.7 2.3E-08 5E-13 56.7 4.0 32 196-227 2-33 (34)
105 KOG1128 Uncharacterized conser 98.7 9.6E-05 2.1E-09 70.9 29.8 215 205-440 402-616 (777)
106 PRK14720 transcript cleavage f 98.7 2.4E-05 5.1E-10 78.9 26.2 240 127-422 28-268 (906)
107 KOG0985 Vesicle coat protein c 98.6 0.00014 3E-09 72.2 29.8 250 139-438 1057-1306(1666)
108 KOG3081 Vesicle coat complex C 98.6 4.7E-05 1E-09 64.1 23.0 247 105-369 18-270 (299)
109 KOG4162 Predicted calmodulin-b 98.6 0.00043 9.3E-09 66.9 32.1 126 276-405 655-783 (799)
110 TIGR03302 OM_YfiO outer membra 98.6 9.8E-06 2.1E-10 70.9 19.7 186 235-440 32-232 (235)
111 TIGR03302 OM_YfiO outer membra 98.6 1.2E-05 2.6E-10 70.3 20.1 187 199-405 31-232 (235)
112 KOG3616 Selective LIM binding 98.6 5.1E-05 1.1E-09 72.6 24.9 138 207-366 738-875 (1636)
113 KOG2376 Signal recognition par 98.6 0.00068 1.5E-08 63.7 30.9 163 271-437 339-517 (652)
114 PRK10370 formate-dependent nit 98.5 3.6E-05 7.9E-10 64.7 19.9 123 180-306 53-178 (198)
115 PRK15179 Vi polysaccharide bio 98.5 3.7E-05 7.9E-10 76.7 23.0 148 126-278 82-229 (694)
116 PRK10370 formate-dependent nit 98.5 2.8E-05 6.1E-10 65.3 19.2 119 284-405 52-173 (198)
117 COG5010 TadD Flp pilus assembl 98.5 3.3E-05 7.3E-10 65.0 18.7 152 178-333 78-229 (257)
118 KOG3081 Vesicle coat complex C 98.5 9.3E-05 2E-09 62.4 20.8 171 223-404 95-270 (299)
119 COG5010 TadD Flp pilus assembl 98.4 0.00012 2.6E-09 61.7 20.4 123 309-434 103-225 (257)
120 COG4783 Putative Zn-dependent 98.4 0.00065 1.4E-08 62.5 26.3 182 199-405 272-454 (484)
121 PRK15179 Vi polysaccharide bio 98.4 3.9E-05 8.4E-10 76.5 20.0 147 90-241 81-227 (694)
122 KOG1127 TPR repeat-containing 98.4 0.00021 4.5E-09 70.9 23.9 131 61-194 528-658 (1238)
123 PRK15359 type III secretion sy 98.4 3.9E-05 8.5E-10 60.9 16.2 95 204-300 27-121 (144)
124 KOG1128 Uncharacterized conser 98.4 3E-05 6.6E-10 74.1 17.8 221 126-369 394-615 (777)
125 KOG3617 WD40 and TPR repeat-co 98.4 0.00075 1.6E-08 65.8 27.0 60 391-450 1306-1369(1416)
126 PRK15359 type III secretion sy 98.4 4.5E-05 9.8E-10 60.6 16.2 95 309-405 27-121 (144)
127 KOG0985 Vesicle coat protein c 98.4 0.001 2.2E-08 66.4 27.8 326 96-464 937-1310(1666)
128 KOG1914 mRNA cleavage and poly 98.4 0.0023 5E-08 59.6 32.5 184 252-437 347-536 (656)
129 KOG0548 Molecular co-chaperone 98.3 0.0012 2.6E-08 61.4 26.3 329 103-440 10-421 (539)
130 KOG3616 Selective LIM binding 98.3 0.00041 8.8E-09 66.7 22.7 138 242-401 738-875 (1636)
131 KOG1127 TPR repeat-containing 98.3 0.00067 1.4E-08 67.5 24.6 185 72-264 471-658 (1238)
132 TIGR02552 LcrH_SycD type III s 98.3 7.7E-05 1.7E-09 58.7 15.4 97 202-300 18-114 (135)
133 KOG3060 Uncharacterized conser 98.2 0.0012 2.5E-08 55.6 21.8 186 110-300 27-220 (289)
134 COG4783 Putative Zn-dependent 98.2 0.00099 2.2E-08 61.3 22.9 107 182-291 322-428 (484)
135 TIGR02552 LcrH_SycD type III s 98.2 8.2E-05 1.8E-09 58.6 14.5 96 237-334 18-113 (135)
136 KOG3060 Uncharacterized conser 98.2 0.0016 3.4E-08 54.8 21.8 187 214-405 25-220 (289)
137 KOG2053 Mitochondrial inherita 98.2 0.0099 2.2E-07 58.9 37.0 191 69-268 53-258 (932)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00011 2.3E-09 67.9 15.6 118 313-437 176-294 (395)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00013 2.8E-09 67.4 16.0 125 203-334 171-296 (395)
140 KOG2053 Mitochondrial inherita 98.1 0.013 2.8E-07 58.2 31.4 223 106-336 20-256 (932)
141 TIGR00756 PPR pentatricopeptid 98.1 6.3E-06 1.4E-10 47.4 4.4 32 379-410 3-34 (35)
142 PF10037 MRP-S27: Mitochondria 98.1 7.2E-05 1.6E-09 69.4 13.2 124 196-319 61-186 (429)
143 TIGR00756 PPR pentatricopeptid 98.1 6.5E-06 1.4E-10 47.3 4.3 34 413-446 2-35 (35)
144 PF09976 TPR_21: Tetratricopep 98.1 0.00036 7.9E-09 55.6 15.6 85 244-330 56-142 (145)
145 PF13812 PPR_3: Pentatricopept 98.1 7.1E-06 1.5E-10 46.8 4.0 33 202-234 2-34 (34)
146 PF09976 TPR_21: Tetratricopep 98.1 0.00029 6.2E-09 56.2 14.5 20 416-435 123-142 (145)
147 PF13812 PPR_3: Pentatricopept 98.1 9.3E-06 2E-10 46.3 4.4 32 378-409 3-34 (34)
148 PF10037 MRP-S27: Mitochondria 98.0 9.1E-05 2E-09 68.7 12.5 120 270-389 65-186 (429)
149 PF08579 RPM2: Mitochondrial r 97.9 0.00043 9.4E-09 50.4 10.9 77 347-423 31-116 (120)
150 PF08579 RPM2: Mitochondrial r 97.9 0.00029 6.2E-09 51.3 9.9 76 207-282 31-115 (120)
151 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00079 1.7E-08 51.4 12.6 98 343-440 4-105 (119)
152 cd00189 TPR Tetratricopeptide 97.8 0.00051 1.1E-08 49.7 11.1 93 345-439 4-96 (100)
153 PF01535 PPR: PPR repeat; Int 97.8 3.9E-05 8.5E-10 42.5 3.7 29 378-406 2-30 (31)
154 cd00189 TPR Tetratricopeptide 97.7 0.00087 1.9E-08 48.4 11.6 91 206-298 5-95 (100)
155 PF01535 PPR: PPR repeat; Int 97.7 5.3E-05 1.1E-09 42.0 3.7 31 412-442 1-31 (31)
156 PRK02603 photosystem I assembl 97.7 0.0031 6.8E-08 51.9 15.7 91 200-291 34-126 (172)
157 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0022 4.7E-08 49.0 13.9 97 204-300 5-105 (119)
158 PRK10866 outer membrane biogen 97.7 0.024 5.2E-07 49.4 21.5 177 242-438 38-239 (243)
159 PRK15363 pathogenicity island 97.7 0.002 4.3E-08 50.7 13.0 99 200-300 34-132 (157)
160 PF12895 Apc3: Anaphase-promot 97.7 8.4E-05 1.8E-09 52.9 5.1 81 354-436 2-83 (84)
161 PF05843 Suf: Suppressor of fo 97.7 0.0011 2.5E-08 59.1 13.1 130 272-404 2-135 (280)
162 PF07079 DUF1347: Protein of u 97.7 0.048 1E-06 50.2 34.9 138 322-468 396-547 (549)
163 KOG0553 TPR repeat-containing 97.6 0.00034 7.4E-09 60.3 8.8 100 316-419 91-190 (304)
164 PF05843 Suf: Suppressor of fo 97.6 0.0024 5.3E-08 57.0 14.9 128 203-334 3-135 (280)
165 PLN03088 SGT1, suppressor of 97.6 0.0014 3E-08 60.8 13.2 105 66-175 9-113 (356)
166 PRK10866 outer membrane biogen 97.6 0.023 5.1E-07 49.5 19.9 185 200-403 31-239 (243)
167 PF12895 Apc3: Anaphase-promot 97.6 0.00017 3.6E-09 51.3 5.5 17 243-259 32-48 (84)
168 PF04840 Vps16_C: Vps16, C-ter 97.6 0.056 1.2E-06 49.0 26.1 122 272-419 178-299 (319)
169 PLN03088 SGT1, suppressor of 97.6 0.0034 7.5E-08 58.2 15.2 87 178-266 14-100 (356)
170 PRK15363 pathogenicity island 97.6 0.0017 3.8E-08 51.0 11.0 95 133-230 38-132 (157)
171 PRK02603 photosystem I assembl 97.5 0.0056 1.2E-07 50.4 14.8 61 274-334 38-100 (172)
172 PF06239 ECSIT: Evolutionarily 97.5 0.00097 2.1E-08 55.0 9.7 88 303-390 44-152 (228)
173 PF06239 ECSIT: Evolutionarily 97.5 0.0035 7.5E-08 51.8 12.6 104 128-251 45-153 (228)
174 COG4700 Uncharacterized protei 97.5 0.037 7.9E-07 44.5 17.9 128 268-399 86-216 (251)
175 KOG2041 WD40 repeat protein [G 97.5 0.011 2.4E-07 56.9 17.1 238 127-404 689-951 (1189)
176 PF14938 SNAP: Soluble NSF att 97.5 0.0089 1.9E-07 53.6 16.3 91 313-404 121-224 (282)
177 CHL00033 ycf3 photosystem I as 97.5 0.0062 1.3E-07 49.9 14.2 94 201-295 35-137 (168)
178 PF14559 TPR_19: Tetratricopep 97.5 0.00048 1E-08 46.6 6.2 64 106-172 2-65 (68)
179 CHL00033 ycf3 photosystem I as 97.4 0.0028 6.2E-08 51.9 11.8 63 307-369 36-100 (168)
180 PF14938 SNAP: Soluble NSF att 97.4 0.02 4.3E-07 51.4 17.8 130 205-334 118-265 (282)
181 PRK10153 DNA-binding transcrip 97.4 0.016 3.5E-07 56.4 17.8 61 307-369 421-481 (517)
182 PRK10153 DNA-binding transcrip 97.4 0.015 3.2E-07 56.6 17.5 71 340-414 419-489 (517)
183 KOG2796 Uncharacterized conser 97.4 0.029 6.2E-07 47.7 16.4 221 97-335 71-315 (366)
184 KOG0553 TPR repeat-containing 97.3 0.0029 6.2E-08 54.8 10.7 104 70-178 92-195 (304)
185 PF13432 TPR_16: Tetratricopep 97.3 0.0009 1.9E-08 44.7 6.0 56 383-439 4-59 (65)
186 KOG1538 Uncharacterized conser 97.3 0.074 1.6E-06 51.1 19.8 258 101-404 562-845 (1081)
187 PF13414 TPR_11: TPR repeat; P 97.2 0.0019 4.2E-08 43.7 7.2 64 376-440 3-67 (69)
188 PF12688 TPR_5: Tetratrico pep 97.2 0.025 5.5E-07 42.8 13.8 88 314-403 9-102 (120)
189 PF14559 TPR_19: Tetratricopep 97.2 0.0015 3.3E-08 44.0 6.5 50 284-334 4-53 (68)
190 PF13525 YfiO: Outer membrane 97.2 0.061 1.3E-06 45.5 17.0 58 208-265 12-71 (203)
191 PF04840 Vps16_C: Vps16, C-ter 97.1 0.19 4.1E-06 45.6 27.6 108 308-435 179-286 (319)
192 PF12688 TPR_5: Tetratrico pep 97.1 0.028 6.1E-07 42.6 12.8 22 136-157 44-65 (120)
193 COG4235 Cytochrome c biogenesi 97.1 0.046 1E-06 47.7 15.6 99 200-300 155-256 (287)
194 PF13432 TPR_16: Tetratricopep 97.1 0.0034 7.4E-08 41.9 7.2 50 247-297 8-57 (65)
195 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.24 5.2E-06 45.7 21.4 145 236-386 397-545 (660)
196 PF13525 YfiO: Outer membrane 97.1 0.099 2.1E-06 44.3 17.5 181 238-431 7-198 (203)
197 PF13414 TPR_11: TPR repeat; P 97.1 0.0032 7E-08 42.6 6.9 63 201-264 3-66 (69)
198 COG4235 Cytochrome c biogenesi 97.0 0.045 9.7E-07 47.8 14.4 102 127-231 153-257 (287)
199 COG4700 Uncharacterized protei 96.9 0.15 3.3E-06 41.1 17.0 152 65-224 62-216 (251)
200 PF12921 ATP13: Mitochondrial 96.9 0.017 3.7E-07 44.3 10.3 52 371-422 47-99 (126)
201 PRK10803 tol-pal system protei 96.9 0.023 4.9E-07 50.0 12.2 85 353-439 155-245 (263)
202 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.38 8.3E-06 44.5 31.5 130 306-438 397-529 (660)
203 PRK10803 tol-pal system protei 96.7 0.058 1.3E-06 47.5 13.7 99 202-300 144-246 (263)
204 KOG2280 Vacuolar assembly/sort 96.7 0.72 1.6E-05 45.6 25.3 312 100-436 442-795 (829)
205 PF13371 TPR_9: Tetratricopept 96.7 0.0098 2.1E-07 40.7 6.9 56 103-159 3-58 (73)
206 KOG0550 Molecular chaperone (D 96.6 0.54 1.2E-05 43.1 21.6 163 199-370 166-350 (486)
207 PF13424 TPR_12: Tetratricopep 96.6 0.0064 1.4E-07 42.3 5.8 63 377-439 6-74 (78)
208 PF03704 BTAD: Bacterial trans 96.6 0.016 3.5E-07 46.1 8.8 67 346-413 67-138 (146)
209 PRK15331 chaperone protein Sic 96.6 0.076 1.7E-06 42.2 11.9 87 316-404 47-133 (165)
210 PF13371 TPR_9: Tetratricopept 96.6 0.012 2.5E-07 40.3 6.7 54 385-439 4-57 (73)
211 KOG2796 Uncharacterized conser 96.6 0.42 9.2E-06 41.0 22.8 158 215-382 163-325 (366)
212 KOG1130 Predicted G-alpha GTPa 96.6 0.035 7.5E-07 50.3 10.9 132 238-369 197-343 (639)
213 KOG1130 Predicted G-alpha GTPa 96.5 0.018 4E-07 52.0 9.0 266 178-444 29-348 (639)
214 PF12921 ATP13: Mitochondrial 96.5 0.056 1.2E-06 41.4 10.6 99 270-388 1-100 (126)
215 PF03704 BTAD: Bacterial trans 96.5 0.025 5.4E-07 45.1 9.1 98 69-167 16-138 (146)
216 PRK15331 chaperone protein Sic 96.3 0.23 4.9E-06 39.6 13.1 92 207-300 43-134 (165)
217 KOG1538 Uncharacterized conser 96.3 0.98 2.1E-05 43.9 19.3 88 272-370 748-846 (1081)
218 PF13281 DUF4071: Domain of un 96.2 1 2.2E-05 41.5 19.3 169 235-405 140-334 (374)
219 PF13424 TPR_12: Tetratricopep 96.2 0.016 3.5E-07 40.2 5.7 63 342-404 6-74 (78)
220 KOG1920 IkappaB kinase complex 96.0 2.6 5.6E-05 44.2 22.7 100 283-402 951-1052(1265)
221 KOG3941 Intermediate in Toll s 96.0 0.083 1.8E-06 45.5 9.6 88 303-390 64-172 (406)
222 PF04053 Coatomer_WDAD: Coatom 95.9 0.42 9E-06 45.6 15.1 158 209-401 269-427 (443)
223 PF04184 ST7: ST7 protein; In 95.8 1.7 3.7E-05 41.1 19.4 58 206-263 264-322 (539)
224 COG3898 Uncharacterized membra 95.8 1.5 3.2E-05 40.1 32.5 307 75-405 69-392 (531)
225 KOG3941 Intermediate in Toll s 95.8 0.21 4.5E-06 43.2 11.3 46 218-263 140-186 (406)
226 KOG0550 Molecular chaperone (D 95.8 1.6 3.4E-05 40.2 21.4 258 69-335 59-350 (486)
227 PF09205 DUF1955: Domain of un 95.8 0.61 1.3E-05 35.4 13.7 59 347-406 92-150 (161)
228 smart00299 CLH Clathrin heavy 95.8 0.73 1.6E-05 36.2 15.9 36 246-282 17-52 (140)
229 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.18 3.9E-06 47.1 11.6 63 270-334 74-140 (453)
230 COG3898 Uncharacterized membra 95.7 1.6 3.6E-05 39.8 30.2 289 142-445 96-397 (531)
231 PF10300 DUF3808: Protein of u 95.7 0.76 1.6E-05 44.5 16.4 177 117-300 179-376 (468)
232 PF13281 DUF4071: Domain of un 95.7 1.8 3.9E-05 40.0 20.6 83 129-211 140-227 (374)
233 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.11 2.3E-06 48.6 9.8 100 340-445 74-179 (453)
234 PF07079 DUF1347: Protein of u 95.6 2 4.3E-05 40.1 30.5 339 70-418 90-532 (549)
235 KOG2041 WD40 repeat protein [G 95.6 2.6 5.7E-05 41.5 21.5 22 243-264 930-951 (1189)
236 PF07035 Mic1: Colon cancer-as 95.6 1 2.2E-05 36.4 14.0 135 116-265 15-149 (167)
237 PF04053 Coatomer_WDAD: Coatom 95.4 0.76 1.7E-05 43.9 15.1 160 244-437 269-428 (443)
238 PF09205 DUF1955: Domain of un 95.4 0.85 1.9E-05 34.7 14.6 63 309-372 89-151 (161)
239 PF10300 DUF3808: Protein of u 95.4 0.68 1.5E-05 44.8 14.8 165 97-264 190-375 (468)
240 COG4649 Uncharacterized protei 95.3 1.2 2.5E-05 35.8 14.2 133 131-264 60-195 (221)
241 smart00299 CLH Clathrin heavy 95.2 1.2 2.6E-05 35.0 15.9 125 205-352 11-136 (140)
242 COG4105 ComL DNA uptake lipopr 95.1 2 4.3E-05 37.0 19.0 71 212-282 45-117 (254)
243 COG4105 ComL DNA uptake lipopr 95.0 2.2 4.7E-05 36.8 19.9 183 165-369 35-232 (254)
244 COG1729 Uncharacterized protei 94.9 0.5 1.1E-05 41.0 11.0 59 381-439 183-243 (262)
245 COG1729 Uncharacterized protei 94.8 1.2 2.6E-05 38.6 13.1 97 63-159 145-244 (262)
246 COG3118 Thioredoxin domain-con 94.8 2.6 5.7E-05 37.1 16.8 121 211-334 144-264 (304)
247 KOG2280 Vacuolar assembly/sort 94.7 5.1 0.00011 40.0 24.7 317 106-438 400-771 (829)
248 PF13512 TPR_18: Tetratricopep 94.7 1.5 3.4E-05 34.1 12.3 72 210-281 19-92 (142)
249 COG0457 NrfG FOG: TPR repeat [ 94.7 2.4 5.2E-05 36.1 29.5 95 202-297 60-156 (291)
250 KOG0543 FKBP-type peptidyl-pro 94.7 0.53 1.1E-05 43.1 11.0 125 67-194 216-354 (397)
251 KOG4555 TPR repeat-containing 94.6 1.5 3.3E-05 33.3 11.7 90 210-301 52-145 (175)
252 KOG1585 Protein required for f 94.6 2.6 5.7E-05 35.9 16.8 207 130-364 31-250 (308)
253 KOG0543 FKBP-type peptidyl-pro 94.5 3.2 7E-05 38.2 15.5 97 201-299 257-354 (397)
254 PF04184 ST7: ST7 protein; In 94.5 4.6 0.0001 38.4 17.9 58 346-403 264-322 (539)
255 KOG2114 Vacuolar assembly/sort 94.4 2.5 5.4E-05 42.6 15.6 178 133-333 337-517 (933)
256 PF13512 TPR_18: Tetratricopep 94.4 1.8 3.9E-05 33.7 11.9 54 352-405 21-76 (142)
257 PF04097 Nic96: Nup93/Nic96; 94.2 6.5 0.00014 39.7 18.9 223 209-444 266-535 (613)
258 PRK11906 transcriptional regul 94.2 4.1 9E-05 38.5 16.0 80 112-194 321-400 (458)
259 PF07035 Mic1: Colon cancer-as 94.2 2.4 5.3E-05 34.2 15.8 133 221-369 14-148 (167)
260 PF08631 SPO22: Meiosis protei 94.1 4.2 9.2E-05 36.4 25.4 63 237-300 85-150 (278)
261 KOG4555 TPR repeat-containing 94.0 1.5 3.2E-05 33.4 10.2 91 315-406 52-145 (175)
262 PF13176 TPR_7: Tetratricopept 93.9 0.08 1.7E-06 30.2 3.0 25 414-438 2-26 (36)
263 COG3629 DnrI DNA-binding trans 93.8 0.8 1.7E-05 40.3 10.2 77 97-174 155-236 (280)
264 PF13170 DUF4003: Protein of u 93.8 4.8 0.00011 36.2 21.3 129 253-383 79-224 (297)
265 PF13428 TPR_14: Tetratricopep 93.8 0.24 5.3E-06 29.7 5.1 27 379-405 4-30 (44)
266 KOG2610 Uncharacterized conser 93.8 2.4 5.2E-05 37.9 12.8 156 212-369 114-275 (491)
267 COG0457 NrfG FOG: TPR repeat [ 93.7 3.9 8.3E-05 34.7 26.8 83 180-263 73-157 (291)
268 COG3629 DnrI DNA-binding trans 93.6 1.1 2.4E-05 39.4 10.6 79 201-280 153-236 (280)
269 PF13170 DUF4003: Protein of u 93.6 5.4 0.00012 35.9 20.6 131 217-349 78-225 (297)
270 PF13428 TPR_14: Tetratricopep 93.5 0.28 6E-06 29.5 5.0 23 242-264 7-29 (44)
271 PRK11906 transcriptional regul 93.5 7 0.00015 37.0 16.0 116 147-264 275-400 (458)
272 COG3118 Thioredoxin domain-con 93.4 5.1 0.00011 35.3 17.2 142 244-390 142-286 (304)
273 KOG2114 Vacuolar assembly/sort 93.2 4.6 0.0001 40.8 15.0 179 95-297 334-516 (933)
274 KOG1941 Acetylcholine receptor 93.0 5.6 0.00012 36.1 14.0 227 178-404 18-274 (518)
275 KOG2610 Uncharacterized conser 92.8 7 0.00015 35.1 16.2 161 178-341 115-283 (491)
276 KOG1585 Protein required for f 92.4 6.4 0.00014 33.7 17.1 90 204-294 153-250 (308)
277 KOG4570 Uncharacterized conser 92.1 1.3 2.8E-05 39.1 8.8 104 125-231 59-165 (418)
278 PF10602 RPN7: 26S proteasome 91.9 3.3 7.1E-05 34.1 10.8 63 202-264 37-101 (177)
279 PF08631 SPO22: Meiosis protei 91.9 9 0.0002 34.3 26.0 223 212-438 4-273 (278)
280 PF10602 RPN7: 26S proteasome 91.6 5.3 0.00012 32.8 11.7 97 237-333 37-140 (177)
281 PF13176 TPR_7: Tetratricopept 91.2 0.54 1.2E-05 26.7 4.0 26 378-403 1-26 (36)
282 KOG1258 mRNA processing protei 91.1 16 0.00035 35.6 27.2 124 304-432 295-421 (577)
283 COG1747 Uncharacterized N-term 90.7 16 0.00035 35.0 21.5 177 235-419 65-247 (711)
284 PF07719 TPR_2: Tetratricopept 90.6 0.64 1.4E-05 25.7 4.0 27 413-439 3-29 (34)
285 KOG1941 Acetylcholine receptor 90.6 8.8 0.00019 34.9 12.5 166 204-369 86-274 (518)
286 PF09613 HrpB1_HrpK: Bacterial 90.6 7.6 0.00016 31.0 12.8 52 106-158 21-72 (160)
287 COG4785 NlpI Lipoprotein NlpI, 90.4 9.8 0.00021 32.0 15.1 179 180-370 79-266 (297)
288 PF13929 mRNA_stabil: mRNA sta 90.4 12 0.00026 33.1 17.0 135 182-316 144-288 (292)
289 PF00515 TPR_1: Tetratricopept 90.4 0.86 1.9E-05 25.2 4.3 28 412-439 2-29 (34)
290 COG4785 NlpI Lipoprotein NlpI, 89.5 12 0.00026 31.6 15.1 163 127-300 96-266 (297)
291 PF09613 HrpB1_HrpK: Bacterial 89.2 9.9 0.00021 30.4 13.6 52 142-195 22-73 (160)
292 PF00515 TPR_1: Tetratricopept 89.2 1.1 2.3E-05 24.8 4.1 27 378-404 3-29 (34)
293 KOG4570 Uncharacterized conser 89.1 7.6 0.00017 34.6 10.8 127 242-370 25-164 (418)
294 PF13431 TPR_17: Tetratricopep 89.0 0.62 1.3E-05 26.1 2.9 24 127-150 10-33 (34)
295 KOG1550 Extracellular protein 88.8 27 0.00059 34.9 24.3 275 146-440 228-538 (552)
296 PF13431 TPR_17: Tetratricopep 88.7 0.64 1.4E-05 26.0 2.9 22 200-221 12-33 (34)
297 cd00923 Cyt_c_Oxidase_Va Cytoc 88.5 3.8 8.3E-05 29.3 7.0 44 289-332 25-68 (103)
298 TIGR02561 HrpB1_HrpK type III 88.5 11 0.00023 29.7 11.5 52 107-159 22-73 (153)
299 COG2976 Uncharacterized protei 88.3 13 0.00029 30.7 13.7 56 384-441 134-189 (207)
300 KOG1550 Extracellular protein 88.2 30 0.00064 34.6 23.5 181 75-267 228-428 (552)
301 COG3947 Response regulator con 88.1 18 0.00039 32.0 14.1 60 238-298 281-340 (361)
302 PF02259 FAT: FAT domain; Int 88.1 22 0.00048 32.9 20.3 64 341-404 146-212 (352)
303 COG2909 MalT ATP-dependent tra 87.9 36 0.00077 35.2 28.3 231 133-366 418-684 (894)
304 KOG2066 Vacuolar assembly/sort 87.6 35 0.00075 34.7 26.1 104 66-176 363-466 (846)
305 KOG1920 IkappaB kinase complex 87.5 44 0.00095 35.8 22.3 79 278-367 972-1052(1265)
306 PF07719 TPR_2: Tetratricopept 87.5 1.6 3.4E-05 24.0 4.1 27 378-404 3-29 (34)
307 PF11207 DUF2989: Protein of u 87.5 6.7 0.00015 32.6 9.1 71 324-395 124-197 (203)
308 PF13374 TPR_10: Tetratricopep 87.2 1.6 3.5E-05 25.3 4.3 28 412-439 3-30 (42)
309 PF02284 COX5A: Cytochrome c o 87.1 9.5 0.00021 27.7 8.7 60 359-419 28-87 (108)
310 TIGR02561 HrpB1_HrpK type III 87.0 13 0.00029 29.2 12.3 53 142-196 22-74 (153)
311 cd00923 Cyt_c_Oxidase_Va Cytoc 86.6 7 0.00015 28.0 7.4 62 357-419 23-84 (103)
312 PRK15180 Vi polysaccharide bio 86.4 9.7 0.00021 36.0 10.4 54 317-371 334-387 (831)
313 PF02284 COX5A: Cytochrome c o 86.3 11 0.00023 27.4 9.4 45 256-300 30-74 (108)
314 COG5159 RPN6 26S proteasome re 86.1 15 0.00033 32.3 10.7 159 104-262 12-191 (421)
315 COG1747 Uncharacterized N-term 85.9 34 0.00075 32.9 24.9 78 182-264 82-159 (711)
316 COG4649 Uncharacterized protei 85.8 17 0.00037 29.4 15.4 140 94-234 58-200 (221)
317 PF13374 TPR_10: Tetratricopep 85.8 2.2 4.8E-05 24.7 4.4 28 377-404 3-30 (42)
318 PF11207 DUF2989: Protein of u 85.7 9.7 0.00021 31.7 9.1 72 183-255 123-197 (203)
319 PF13929 mRNA_stabil: mRNA sta 85.7 25 0.00055 31.2 17.4 138 215-352 142-289 (292)
320 KOG0276 Vesicle coat complex C 84.6 14 0.0003 36.1 10.8 131 239-402 617-747 (794)
321 PF13181 TPR_8: Tetratricopept 84.4 2.9 6.4E-05 22.9 4.2 29 412-440 2-30 (34)
322 PF00637 Clathrin: Region in C 84.1 0.41 8.9E-06 37.8 0.6 47 212-258 18-64 (143)
323 COG3947 Response regulator con 83.9 30 0.00066 30.7 15.1 60 343-403 281-340 (361)
324 KOG4234 TPR repeat-containing 83.7 18 0.0004 30.1 9.6 95 314-412 103-202 (271)
325 COG4455 ImpE Protein of avirul 82.9 10 0.00023 31.9 8.1 56 241-297 6-61 (273)
326 PF00637 Clathrin: Region in C 82.9 0.62 1.3E-05 36.8 1.2 86 242-334 13-98 (143)
327 PF10579 Rapsyn_N: Rapsyn N-te 82.6 4.8 0.0001 27.6 5.1 47 388-434 18-66 (80)
328 TIGR03504 FimV_Cterm FimV C-te 81.5 3.1 6.6E-05 25.0 3.5 25 136-160 5-29 (44)
329 COG2909 MalT ATP-dependent tra 81.1 73 0.0016 33.1 27.9 225 212-436 426-684 (894)
330 PF07163 Pex26: Pex26 protein; 81.0 28 0.00061 30.7 10.3 87 208-294 90-181 (309)
331 KOG4234 TPR repeat-containing 80.3 33 0.00072 28.6 10.2 89 211-300 105-197 (271)
332 PRK09687 putative lyase; Provi 80.2 44 0.00095 29.9 28.8 134 270-419 141-275 (280)
333 PF13181 TPR_8: Tetratricopept 80.1 5.6 0.00012 21.7 4.3 27 378-404 3-29 (34)
334 COG4455 ImpE Protein of avirul 79.8 16 0.00035 30.8 8.2 77 308-385 3-81 (273)
335 PF07163 Pex26: Pex26 protein; 79.7 30 0.00065 30.5 10.1 88 242-329 89-181 (309)
336 KOG4648 Uncharacterized conser 79.4 13 0.00028 33.6 8.0 51 280-332 106-157 (536)
337 PF10345 Cohesin_load: Cohesin 79.4 77 0.0017 32.3 31.4 186 76-262 38-251 (608)
338 PF07575 Nucleopor_Nup85: Nup8 79.3 74 0.0016 32.0 15.5 37 423-459 507-543 (566)
339 TIGR03504 FimV_Cterm FimV C-te 78.9 4.9 0.00011 24.1 3.8 20 384-403 7-26 (44)
340 PF13174 TPR_6: Tetratricopept 78.8 4.1 8.9E-05 22.0 3.4 24 416-439 5-28 (33)
341 KOG1586 Protein required for f 78.3 43 0.00093 28.8 13.0 16 212-227 25-40 (288)
342 PF07721 TPR_4: Tetratricopept 77.5 3 6.6E-05 21.5 2.4 22 133-154 4-25 (26)
343 KOG1258 mRNA processing protei 77.1 79 0.0017 31.2 32.7 376 64-448 84-515 (577)
344 PF04097 Nic96: Nup93/Nic96; 77.0 60 0.0013 33.0 13.2 91 62-158 261-355 (613)
345 KOG0890 Protein kinase of the 76.2 1.7E+02 0.0036 34.5 25.8 320 103-441 1391-1732(2382)
346 COG2976 Uncharacterized protei 75.0 47 0.001 27.6 14.6 88 314-406 97-189 (207)
347 PHA02875 ankyrin repeat protei 74.6 81 0.0018 30.1 15.8 37 188-224 50-88 (413)
348 PF06552 TOM20_plant: Plant sp 74.2 46 0.001 27.3 9.2 14 303-316 110-123 (186)
349 KOG0687 26S proteasome regulat 73.8 70 0.0015 29.0 12.7 46 131-176 105-154 (393)
350 COG5159 RPN6 26S proteasome re 73.8 65 0.0014 28.6 11.0 24 415-438 129-152 (421)
351 COG0790 FOG: TPR repeat, SEL1 73.1 70 0.0015 28.7 20.1 85 71-162 53-145 (292)
352 cd00280 TRFH Telomeric Repeat 72.8 33 0.00072 28.1 8.0 67 111-181 85-159 (200)
353 PRK09687 putative lyase; Provi 72.8 71 0.0015 28.6 27.1 227 199-450 35-271 (280)
354 KOG0276 Vesicle coat complex C 72.3 1.1E+02 0.0023 30.5 13.2 48 105-158 647-694 (794)
355 KOG0890 Protein kinase of the 71.9 2.1E+02 0.0046 33.7 25.0 318 64-405 1388-1731(2382)
356 PRK13342 recombination factor 71.6 97 0.0021 29.7 19.0 21 215-235 244-264 (413)
357 KOG1464 COP9 signalosome, subu 71.1 73 0.0016 28.0 17.7 183 143-327 40-252 (440)
358 PF14689 SPOB_a: Sensor_kinase 71.0 10 0.00022 24.8 4.2 29 410-438 22-50 (62)
359 PF02259 FAT: FAT domain; Int 70.6 89 0.0019 28.8 22.3 192 66-264 5-212 (352)
360 KOG4648 Uncharacterized conser 69.7 21 0.00046 32.3 7.0 97 70-171 108-204 (536)
361 PF10579 Rapsyn_N: Rapsyn N-te 69.7 19 0.00042 24.8 5.2 17 310-326 47-63 (80)
362 KOG2063 Vacuolar assembly/sort 69.5 1.6E+02 0.0034 31.2 16.8 27 132-158 506-532 (877)
363 KOG4642 Chaperone-dependent E3 68.9 77 0.0017 27.4 11.2 118 105-226 20-142 (284)
364 TIGR02508 type_III_yscG type I 68.8 42 0.00092 24.4 7.5 29 385-417 48-76 (115)
365 KOG4077 Cytochrome c oxidase, 68.6 41 0.00089 25.6 7.2 35 264-298 77-111 (149)
366 PF11848 DUF3368: Domain of un 68.4 22 0.00048 21.7 5.0 29 389-417 15-43 (48)
367 PF08424 NRDE-2: NRDE-2, neces 68.0 99 0.0022 28.4 16.9 61 219-281 49-109 (321)
368 KOG4507 Uncharacterized conser 67.6 55 0.0012 32.2 9.6 102 212-315 618-719 (886)
369 KOG2297 Predicted translation 67.1 96 0.0021 27.9 20.1 25 64-88 35-59 (412)
370 KOG1464 COP9 signalosome, subu 66.4 92 0.002 27.4 18.2 157 241-398 70-253 (440)
371 TIGR02508 type_III_yscG type I 66.0 49 0.0011 24.1 9.1 51 315-371 48-98 (115)
372 smart00028 TPR Tetratricopepti 65.3 13 0.00027 19.1 3.4 25 414-438 4-28 (34)
373 PF11848 DUF3368: Domain of un 64.6 26 0.00056 21.4 4.8 32 106-137 13-44 (48)
374 PF14853 Fis1_TPR_C: Fis1 C-te 63.2 35 0.00076 21.4 5.4 38 135-174 6-43 (53)
375 cd08819 CARD_MDA5_2 Caspase ac 63.2 51 0.0011 23.3 7.3 13 215-227 50-62 (88)
376 PHA02875 ankyrin repeat protei 62.6 76 0.0017 30.3 10.2 212 209-447 7-231 (413)
377 COG5108 RPO41 Mitochondrial DN 62.6 66 0.0014 32.2 9.2 75 311-388 33-115 (1117)
378 PF12862 Apc5: Anaphase-promot 62.1 50 0.0011 23.6 6.8 22 418-439 48-69 (94)
379 PRK15180 Vi polysaccharide bio 62.1 1.5E+02 0.0033 28.5 13.7 111 186-300 310-420 (831)
380 PF11846 DUF3366: Domain of un 61.5 49 0.0011 27.6 7.6 32 373-404 141-172 (193)
381 KOG0686 COP9 signalosome, subu 58.7 1.6E+02 0.0035 27.7 15.1 63 202-264 151-215 (466)
382 PF13762 MNE1: Mitochondrial s 58.7 89 0.0019 24.7 11.4 24 133-156 42-65 (145)
383 PRK10564 maltose regulon perip 58.2 22 0.00047 31.8 4.9 40 339-378 254-294 (303)
384 PF11846 DUF3366: Domain of un 57.1 35 0.00076 28.5 6.0 32 127-158 141-172 (193)
385 KOG2396 HAT (Half-A-TPR) repea 56.4 2E+02 0.0043 28.0 33.4 81 77-160 89-170 (568)
386 KOG2659 LisH motif-containing 56.1 1.3E+02 0.0028 25.8 9.3 56 206-261 69-128 (228)
387 cd08819 CARD_MDA5_2 Caspase ac 56.0 70 0.0015 22.6 6.9 9 252-260 52-60 (88)
388 PF14689 SPOB_a: Sensor_kinase 55.6 35 0.00075 22.2 4.5 25 380-404 27-51 (62)
389 PF06552 TOM20_plant: Plant sp 55.5 1.2E+02 0.0025 25.0 11.0 41 218-266 97-137 (186)
390 KOG1586 Protein required for f 55.4 1.4E+02 0.003 25.9 18.2 21 352-372 165-185 (288)
391 PF10366 Vps39_1: Vacuolar sor 55.3 72 0.0016 23.7 6.7 26 309-334 42-67 (108)
392 COG5108 RPO41 Mitochondrial DN 55.2 90 0.002 31.3 8.8 90 241-333 33-130 (1117)
393 PF12926 MOZART2: Mitotic-spin 54.3 74 0.0016 22.4 7.3 43 116-158 29-71 (88)
394 KOG4567 GTPase-activating prot 54.0 86 0.0019 28.2 7.7 44 291-334 263-306 (370)
395 PF07575 Nucleopor_Nup85: Nup8 53.0 46 0.00099 33.5 7.0 77 256-334 390-466 (566)
396 PF08311 Mad3_BUB1_I: Mad3/BUB 52.2 1.1E+02 0.0023 23.5 9.4 44 394-437 81-125 (126)
397 COG0735 Fur Fe2+/Zn2+ uptake r 52.0 1E+02 0.0022 24.4 7.5 12 253-264 37-48 (145)
398 PF10475 DUF2450: Protein of u 51.7 1.4E+02 0.003 26.9 9.3 28 271-298 127-154 (291)
399 PF05944 Phage_term_smal: Phag 51.7 1E+02 0.0022 23.9 7.1 31 131-161 49-79 (132)
400 PF13762 MNE1: Mitochondrial s 51.7 1.2E+02 0.0026 24.0 10.9 23 240-262 43-65 (145)
401 PF09670 Cas_Cas02710: CRISPR- 51.3 2.2E+02 0.0047 26.9 11.5 55 280-335 140-198 (379)
402 KOG0991 Replication factor C, 51.0 1.7E+02 0.0036 25.4 11.7 141 273-423 132-284 (333)
403 PRK11619 lytic murein transgly 50.4 3E+02 0.0065 28.3 33.0 180 214-399 254-462 (644)
404 PF11838 ERAP1_C: ERAP1-like C 50.3 2E+02 0.0043 26.2 19.7 146 287-438 146-302 (324)
405 PRK09857 putative transposase; 49.6 1.4E+02 0.003 27.0 8.8 57 388-445 218-274 (292)
406 PF10366 Vps39_1: Vacuolar sor 49.1 1.1E+02 0.0023 22.7 7.5 27 378-404 41-67 (108)
407 PF11663 Toxin_YhaV: Toxin wit 48.7 22 0.00047 27.4 3.0 29 355-385 109-137 (140)
408 COG0735 Fur Fe2+/Zn2+ uptake r 48.5 1.3E+02 0.0029 23.7 8.1 54 119-173 10-63 (145)
409 KOG4507 Uncharacterized conser 48.0 1.8E+02 0.0039 28.9 9.5 100 179-280 620-719 (886)
410 PF03745 DUF309: Domain of unk 47.8 75 0.0016 20.7 5.1 49 386-434 9-62 (62)
411 KOG4077 Cytochrome c oxidase, 46.8 1.3E+02 0.0028 23.1 9.7 43 327-369 70-112 (149)
412 KOG4567 GTPase-activating prot 46.6 1.3E+02 0.0028 27.2 7.6 71 256-331 263-343 (370)
413 PRK10564 maltose regulon perip 46.4 44 0.00095 29.9 4.9 41 199-239 254-295 (303)
414 PF02847 MA3: MA3 domain; Int 46.3 1.1E+02 0.0023 22.6 6.7 21 312-332 8-28 (113)
415 KOG3364 Membrane protein invol 46.2 76 0.0016 24.7 5.5 72 93-166 30-105 (149)
416 PF08311 Mad3_BUB1_I: Mad3/BUB 46.1 1.3E+02 0.0029 23.0 9.0 43 359-401 81-124 (126)
417 cd00280 TRFH Telomeric Repeat 45.8 1.7E+02 0.0038 24.2 7.8 21 244-264 119-139 (200)
418 PF12926 MOZART2: Mitotic-spin 45.7 1.1E+02 0.0023 21.7 7.7 42 257-298 29-70 (88)
419 COG4259 Uncharacterized protei 45.5 1.1E+02 0.0023 22.3 5.8 56 112-169 54-109 (121)
420 KOG3677 RNA polymerase I-assoc 45.3 1.6E+02 0.0034 27.8 8.3 61 96-157 236-299 (525)
421 PF11663 Toxin_YhaV: Toxin wit 45.3 30 0.00066 26.7 3.3 22 144-165 109-130 (140)
422 PF14669 Asp_Glu_race_2: Putat 45.1 1.8E+02 0.004 24.2 15.2 55 346-400 137-205 (233)
423 PF02184 HAT: HAT (Half-A-TPR) 44.6 55 0.0012 18.1 3.4 26 391-418 2-27 (32)
424 PRK13342 recombination factor 43.6 3E+02 0.0066 26.3 18.7 36 319-354 243-278 (413)
425 KOG4521 Nuclear pore complex, 43.1 4.9E+02 0.011 28.6 14.0 129 308-439 985-1131(1480)
426 PF04910 Tcf25: Transcriptiona 42.7 2.9E+02 0.0063 25.9 20.4 125 127-264 37-167 (360)
427 PF08424 NRDE-2: NRDE-2, neces 42.2 2.8E+02 0.006 25.5 18.0 118 323-442 48-185 (321)
428 PRK07003 DNA polymerase III su 42.0 3E+02 0.0065 28.9 10.5 104 356-462 179-296 (830)
429 PF11817 Foie-gras_1: Foie gra 42.0 1.5E+02 0.0032 25.9 7.8 57 241-297 183-244 (247)
430 PF14853 Fis1_TPR_C: Fis1 C-te 41.2 90 0.002 19.6 5.8 20 385-404 10-29 (53)
431 PF03745 DUF309: Domain of unk 41.1 1E+02 0.0022 20.1 5.5 16 318-333 11-26 (62)
432 PF09868 DUF2095: Uncharacteri 40.8 97 0.0021 23.1 5.1 23 103-125 69-91 (128)
433 KOG0376 Serine-threonine phosp 40.6 37 0.00081 32.3 3.9 103 313-421 11-115 (476)
434 COG5187 RPN7 26S proteasome re 40.4 2.7E+02 0.006 25.0 12.8 98 200-299 114-220 (412)
435 PF04858 TH1: TH1 protein; In 40.4 4.1E+02 0.0088 26.9 23.5 26 199-224 161-186 (584)
436 PF12862 Apc5: Anaphase-promot 40.3 1.4E+02 0.0029 21.4 7.1 22 243-264 48-69 (94)
437 KOG2422 Uncharacterized conser 40.3 3.9E+02 0.0085 26.7 15.9 193 127-321 281-498 (665)
438 PF09986 DUF2225: Uncharacteri 40.3 2.4E+02 0.0051 24.1 10.4 24 207-230 171-194 (214)
439 PRK10941 hypothetical protein; 40.3 2.7E+02 0.0059 24.8 10.2 77 98-175 184-261 (269)
440 KOG0687 26S proteasome regulat 40.1 3E+02 0.0064 25.2 14.7 97 201-299 104-209 (393)
441 smart00386 HAT HAT (Half-A-TPR 39.5 58 0.0013 16.9 4.0 29 390-419 1-29 (33)
442 KOG1308 Hsp70-interacting prot 39.2 30 0.00065 31.4 2.9 94 107-203 126-219 (377)
443 PF09454 Vps23_core: Vps23 cor 39.1 51 0.0011 21.8 3.3 49 374-423 6-54 (65)
444 PRK08691 DNA polymerase III su 38.6 3.2E+02 0.0068 28.3 10.1 84 322-408 180-277 (709)
445 PF09670 Cas_Cas02710: CRISPR- 38.6 3.5E+02 0.0075 25.6 11.6 56 209-265 139-198 (379)
446 PF11817 Foie-gras_1: Foie gra 38.3 1.6E+02 0.0034 25.8 7.3 59 380-438 182-245 (247)
447 KOG1308 Hsp70-interacting prot 38.1 20 0.00042 32.6 1.6 90 142-236 126-217 (377)
448 PRK11619 lytic murein transgly 38.0 4.7E+02 0.01 26.9 35.6 182 249-436 254-464 (644)
449 PF00244 14-3-3: 14-3-3 protei 37.3 2.8E+02 0.006 24.1 8.7 40 101-140 7-46 (236)
450 KOG3807 Predicted membrane pro 36.8 3.4E+02 0.0073 24.9 12.5 18 247-264 286-303 (556)
451 PRK11639 zinc uptake transcrip 36.5 2.3E+02 0.005 23.1 7.5 37 319-355 38-74 (169)
452 KOG0686 COP9 signalosome, subu 36.0 3.9E+02 0.0084 25.4 14.4 56 175-230 159-216 (466)
453 COG0790 FOG: TPR repeat, SEL1 36.0 3.2E+02 0.0069 24.4 24.7 16 356-371 206-221 (292)
454 PF04762 IKI3: IKI3 family; I 35.7 5.1E+02 0.011 28.1 11.7 198 63-262 698-927 (928)
455 PRK14958 DNA polymerase III su 35.5 4.3E+02 0.0093 26.2 10.4 76 332-410 191-279 (509)
456 PF09477 Type_III_YscG: Bacter 35.3 1.9E+02 0.0041 21.5 9.8 81 179-266 19-99 (116)
457 PRK14951 DNA polymerase III su 35.1 5.1E+02 0.011 26.5 11.3 83 323-408 186-282 (618)
458 KOG2297 Predicted translation 34.3 3.6E+02 0.0078 24.5 16.9 21 376-396 321-341 (412)
459 PF10475 DUF2450: Protein of u 34.1 3.5E+02 0.0077 24.4 11.0 53 206-264 103-155 (291)
460 PF02847 MA3: MA3 domain; Int 33.3 2E+02 0.0042 21.2 6.3 22 206-227 7-28 (113)
461 PF00244 14-3-3: 14-3-3 protei 33.2 3.3E+02 0.0071 23.7 10.9 57 206-262 6-63 (236)
462 PF14669 Asp_Glu_race_2: Putat 32.9 3E+02 0.0064 23.1 16.3 23 277-299 138-160 (233)
463 TIGR01228 hutU urocanate hydra 32.8 2.9E+02 0.0063 26.9 8.2 178 143-336 207-423 (545)
464 KOG0991 Replication factor C, 32.6 3.4E+02 0.0073 23.7 15.6 106 280-389 168-285 (333)
465 KOG0403 Neoplastic transformat 32.5 4.6E+02 0.01 25.2 16.2 25 378-402 347-371 (645)
466 PHA02798 ankyrin-like protein; 32.0 5E+02 0.011 25.5 10.5 13 398-410 273-285 (489)
467 KOG4642 Chaperone-dependent E3 31.6 3.5E+02 0.0077 23.6 10.2 80 144-227 24-104 (284)
468 PF04090 RNA_pol_I_TF: RNA pol 31.6 2.7E+02 0.0059 23.4 7.1 64 95-158 41-104 (199)
469 cd07153 Fur_like Ferric uptake 31.3 1.2E+02 0.0026 22.5 4.9 38 318-355 12-49 (116)
470 PHA02537 M terminase endonucle 31.1 3.5E+02 0.0076 23.4 9.3 29 133-161 86-114 (230)
471 PF07304 SRA1: Steroid recepto 30.2 60 0.0013 26.1 3.1 18 141-158 101-118 (157)
472 PRK09462 fur ferric uptake reg 29.9 2.8E+02 0.006 21.9 7.2 64 327-390 3-66 (148)
473 PRK09857 putative transposase; 29.8 4.2E+02 0.0092 23.9 9.8 56 353-409 218-273 (292)
474 cd07153 Fur_like Ferric uptake 29.7 1.7E+02 0.0037 21.7 5.5 35 215-249 14-48 (116)
475 KOG3364 Membrane protein invol 29.7 2.8E+02 0.006 21.8 9.2 22 279-300 79-100 (149)
476 PRK05414 urocanate hydratase; 29.6 5.5E+02 0.012 25.2 10.0 67 144-224 217-288 (556)
477 PF15297 CKAP2_C: Cytoskeleton 29.4 4.6E+02 0.01 24.3 10.0 63 358-422 120-186 (353)
478 PF11838 ERAP1_C: ERAP1-like C 29.3 4.4E+02 0.0094 23.9 19.0 108 322-434 146-260 (324)
479 KOG4814 Uncharacterized conser 29.3 5E+02 0.011 26.4 9.3 86 352-439 365-456 (872)
480 COG4003 Uncharacterized protei 29.1 1.9E+02 0.0041 20.1 4.7 21 105-125 41-61 (98)
481 PRK11639 zinc uptake transcrip 29.1 3.2E+02 0.0069 22.3 7.6 37 214-250 38-74 (169)
482 PF11123 DNA_Packaging_2: DNA 29.0 1.7E+02 0.0037 19.9 4.3 14 93-106 29-42 (82)
483 PF10255 Paf67: RNA polymerase 28.9 3.8E+02 0.0083 25.5 8.4 99 305-403 74-191 (404)
484 PRK14963 DNA polymerase III su 28.9 5.7E+02 0.012 25.4 10.0 88 74-163 176-274 (504)
485 PF01475 FUR: Ferric uptake re 28.7 1.1E+02 0.0024 23.0 4.3 44 312-355 13-56 (120)
486 PRK14700 recombination factor 28.5 4.5E+02 0.0097 23.8 16.4 111 126-251 63-176 (300)
487 PF09454 Vps23_core: Vps23 cor 28.4 1.6E+02 0.0035 19.5 4.3 47 200-247 7-53 (65)
488 KOG0376 Serine-threonine phosp 27.7 1.7E+02 0.0036 28.2 5.8 98 180-282 18-116 (476)
489 PRK08691 DNA polymerase III su 27.6 7.2E+02 0.016 25.9 11.6 30 167-198 248-277 (709)
490 PRK13341 recombination factor 27.2 7.5E+02 0.016 26.0 18.7 68 200-268 258-330 (725)
491 PRK14956 DNA polymerase III su 27.2 6.1E+02 0.013 24.9 11.5 44 324-369 184-228 (484)
492 PF01475 FUR: Ferric uptake re 27.0 1.7E+02 0.0036 22.0 5.0 23 215-237 21-43 (120)
493 PF14561 TPR_20: Tetratricopep 26.8 2.4E+02 0.0051 20.1 8.6 31 235-265 21-51 (90)
494 PRK10941 hypothetical protein; 25.9 4.8E+02 0.01 23.3 10.9 59 346-405 186-244 (269)
495 TIGR03581 EF_0839 conserved hy 25.7 2.4E+02 0.0051 24.0 5.7 81 322-402 137-234 (236)
496 PF08542 Rep_fac_C: Replicatio 25.4 2.4E+02 0.0052 19.6 5.7 47 341-389 5-51 (89)
497 PF15297 CKAP2_C: Cytoskeleton 25.0 5.6E+02 0.012 23.8 8.7 44 239-282 143-186 (353)
498 KOG2659 LisH motif-containing 25.0 4.5E+02 0.0098 22.7 10.9 62 270-333 25-91 (228)
499 PF07678 A2M_comp: A-macroglob 24.9 4.7E+02 0.01 22.8 8.4 29 200-228 131-159 (246)
500 PF12796 Ank_2: Ankyrin repeat 24.9 1.6E+02 0.0034 20.4 4.3 13 433-445 74-86 (89)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.3e-60 Score=478.19 Aligned_cols=393 Identities=19% Similarity=0.239 Sum_probs=372.6
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHhhcCCCCC-------------------------------CCHHHHHHHHHHHHccCC
Q 012126 62 PCRVQKLIASQSDPLLAKEIFDYASRQPNFR-------------------------------HSNSTYLILILKLGRAKY 110 (470)
Q Consensus 62 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------------~~~~~~~~ll~~~~~~~~ 110 (470)
...+...+.+.|+++.|+++|++|...+-++ |+..+|+.++.+|++.|+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~ 452 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQD 452 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcC
Confidence 3444455567788888888888886543221 678899999999999999
Q ss_pred chHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHH
Q 012126 111 FSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFK 190 (470)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~ 190 (470)
++.|.++|+.|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++..+++ .|++++|.++|+
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k-~G~~eeAl~lf~ 531 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR-AGQVAKAFGAYG 531 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-CcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999984 556999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 012126 191 SAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFE--RGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFV 268 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 268 (470)
+|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ .|+.||..+|++++.+|++.|++++|.++|++|.+.|+.
T Consensus 532 ~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~ 611 (1060)
T PLN03218 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999986 679999999999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHH
Q 012126 269 PDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLV 348 (470)
Q Consensus 269 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 348 (470)
|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|+.+|
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI 691 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHH
Q 012126 349 GGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEME 428 (470)
Q Consensus 349 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 428 (470)
.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++
T Consensus 692 ~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le 771 (1060)
T PLN03218 692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccccCCceeeecccch
Q 012126 429 KLGEVLNEIVKVEIKGDTRIVEAGIGL 455 (470)
Q Consensus 429 ~a~~~~~~m~~~~~~p~~~~~~~~~~~ 455 (470)
+|.+++++|.+.|+.||..+++.++++
T Consensus 772 ~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 772 VGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999999988765
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9e-59 Score=469.83 Aligned_cols=380 Identities=18% Similarity=0.236 Sum_probs=352.6
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCC--------------------------
Q 012126 74 DPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYP-------------------------- 127 (470)
Q Consensus 74 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------------------------- 127 (470)
+...++...++.... .++...|..++..+++.|++++|.++|++|...++.
T Consensus 352 ~~~~~~~~~~~~~~~---~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~l 428 (1060)
T PLN03218 352 EEENSLAAYNGGVSG---KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRF 428 (1060)
T ss_pred hhhhhHHHhccccCC---CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 334445555544322 345667777777777888888888888888776642
Q ss_pred ------CCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCH
Q 012126 128 ------VTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNT 201 (470)
Q Consensus 128 ------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 201 (470)
|+..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.++..+++ .|++++|.++|++|.+.|+.||.
T Consensus 429 f~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k-~G~vd~A~~vf~eM~~~Gv~Pdv 507 (1060)
T PLN03218 429 AKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAK-SGKVDAMFEVFHEMVNAGVEANV 507 (1060)
T ss_pred HHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-CcCHHHHHHHHHHHHHcCCCCCH
Confidence 57789999999999999999999999999999999999999999999995 55699999999999999999999
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--CCCCCCHhhHHHHHH
Q 012126 202 KSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLN--KGFVPDTLSYTTLLN 279 (470)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~ 279 (470)
.+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+++|.
T Consensus 508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ 587 (1060)
T PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMK 587 (1060)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986 678999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHH
Q 012126 280 SLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDV 359 (470)
Q Consensus 280 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 359 (470)
+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++
T Consensus 588 ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ee 667 (1060)
T PLN03218 588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 012126 360 AKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVK 439 (470)
Q Consensus 360 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 439 (470)
|.+++++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+
T Consensus 668 A~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCceeeecccchhh
Q 012126 440 VEIKGDTRIVEAGIGLED 457 (470)
Q Consensus 440 ~~~~p~~~~~~~~~~~~~ 457 (470)
.|+.||..++..++..+.
T Consensus 748 ~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 748 LGLCPNTITYSILLVASE 765 (1060)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999998876544
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-54 Score=436.56 Aligned_cols=381 Identities=18% Similarity=0.242 Sum_probs=332.9
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 012126 62 PCRVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYA 141 (470)
Q Consensus 62 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 141 (470)
-..+...+...|++++|+++|+++....++.|+..+|+.++.+|++.++++.+.+++..|.+.|+.|+..+|+.|+..|+
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~ 169 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV 169 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHh
Confidence 35556777889999999999999987766789999999999999999999999999999999999999999999999999
Q ss_pred HcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHH-------------------
Q 012126 142 ESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTK------------------- 202 (470)
Q Consensus 142 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------- 202 (470)
+.|++++|.++|++|.+ ||..+|+.++..+++. |++++|+++|++|.+.|+.||..
T Consensus 170 k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~-g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 170 KCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDA-GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred cCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHC-cCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999864 7888999999998854 56899999999998777666544
Q ss_pred ----------------HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012126 203 ----------------SYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKG 266 (470)
Q Consensus 203 ----------------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 266 (470)
+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|+++|++|.+.|
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 456777888888888888888888864 488889999999999999999999999998888
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHH
Q 012126 267 FVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRT 346 (470)
Q Consensus 267 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 346 (470)
+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ ||..+|+.
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~ 396 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNA 396 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHH
Confidence 89999999999999999999999999999999988889999999999999999999999999998864 68889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHcCC
Q 012126 347 LVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLK-AGEAPHEDTWVMIVPQICAGE 425 (470)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g 425 (470)
||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|.+ .|+.|+..+|+.++.+|++.|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 9999999999999999999999889999999999999999999999999999999975 588899999999999999999
Q ss_pred cHHHHHHHHHHHHHccccCCceeeecccchhhH
Q 012126 426 EMEKLGEVLNEIVKVEIKGDTRIVEAGIGLEDY 458 (470)
Q Consensus 426 ~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~ 458 (470)
++++|.+++++| ++.|+..++..++..+..
T Consensus 477 ~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~ 506 (697)
T PLN03081 477 LLDEAYAMIRRA---PFKPTVNMWAALLTACRI 506 (697)
T ss_pred CHHHHHHHHHHC---CCCCCHHHHHHHHHHHHH
Confidence 999998888766 577888888777766543
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.2e-53 Score=425.21 Aligned_cols=373 Identities=15% Similarity=0.227 Sum_probs=337.4
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 012126 62 PCRVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYA 141 (470)
Q Consensus 62 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 141 (470)
...+...+...++.+.+.+++..+.+. |+.|+..+|+.++..|++.|+++.|.++|++|.+ ++..+|+.++.+|+
T Consensus 126 ~~~ll~a~~~~~~~~~a~~l~~~m~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~ 200 (697)
T PLN03081 126 YDALVEACIALKSIRCVKAVYWHVESS-GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLV 200 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHH
Confidence 345556677888999999999988754 5788999999999999999999999999999863 68889999999999
Q ss_pred HcCCchhHHHHHHHHHhCCCccCHHHHHHH-----------------------------------HHHHHhcCCChhhHH
Q 012126 142 ESNLPDRALKTFRSMLEFNCKPLPKQLNRI-----------------------------------LELLVTHRNYLRPAF 186 (470)
Q Consensus 142 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-----------------------------------l~~~~~~~~~~~~a~ 186 (470)
+.|++++|+++|++|.+.|+.|+..+|+.+ +..+. ..|++++|.
T Consensus 201 ~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~-k~g~~~~A~ 279 (697)
T PLN03081 201 DAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYS-KCGDIEDAR 279 (697)
T ss_pred HCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHH-HCCCHHHHH
Confidence 999999999999999888877777666554 44444 445688999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012126 187 DLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKG 266 (470)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 266 (470)
++|++|.. +|..+||.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|
T Consensus 280 ~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g 355 (697)
T PLN03081 280 CVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355 (697)
T ss_pred HHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 99998864 69999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHH
Q 012126 267 FVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRT 346 (470)
Q Consensus 267 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 346 (470)
+.||..+|++|+++|+++|++++|.++|++|.+ ||..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.
T Consensus 356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 431 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA 431 (697)
T ss_pred CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 999999999999999999999999999999974 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 012126 347 LVGGLCDQGMFDVAKKYMQLMIS-KGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGE 425 (470)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 425 (470)
++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|+.|+.+|...|
T Consensus 432 ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g 508 (697)
T PLN03081 432 VLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHK 508 (697)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999986 699999999999999999999999999999876 57899999999999999999
Q ss_pred cHHHHHHHHHHHHHccccCCc-eeeeccc
Q 012126 426 EMEKLGEVLNEIVKVEIKGDT-RIVEAGI 453 (470)
Q Consensus 426 ~~~~a~~~~~~m~~~~~~p~~-~~~~~~~ 453 (470)
+++.|.++++++. ++.|+. .++..++
T Consensus 509 ~~~~a~~~~~~l~--~~~p~~~~~y~~L~ 535 (697)
T PLN03081 509 NLELGRLAAEKLY--GMGPEKLNNYVVLL 535 (697)
T ss_pred CcHHHHHHHHHHh--CCCCCCCcchHHHH
Confidence 9999999999997 556654 3444333
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-51 Score=424.96 Aligned_cols=374 Identities=13% Similarity=0.149 Sum_probs=302.5
Q ss_pred ChHHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 012126 61 SPCRVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIY 140 (470)
Q Consensus 61 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 140 (470)
....+...+.+.|+.+.|.++|+.+. .++..+|+.+|..|++.|++++|.++|.+|...|+.|+..+|+.++.+|
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence 34566788888999999999999885 3567889999999999999999999999999999999999999999999
Q ss_pred HHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 012126 141 AESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIA 220 (470)
Q Consensus 141 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 220 (470)
++.|+.+.|.+++..|.+.|+.||..+|+.++..+.+ .|++++|.++|++|.. ||..+||.+|.+|++.|++++|
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k-~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A 373 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS-LGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKA 373 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHh-cCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHH
Confidence 9999999999999999999999999999999998884 4568999999998864 6888999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012126 221 YTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 221 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 300 (470)
.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+++|++.|++++|.++|++|.+
T Consensus 374 ~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~- 452 (857)
T PLN03077 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE- 452 (857)
T ss_pred HHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 012126 301 GCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSH 380 (470)
Q Consensus 301 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 380 (470)
+|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.+|..+++
T Consensus 453 ---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~n 528 (857)
T PLN03077 453 ---KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN 528 (857)
T ss_pred ---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceech
Confidence 4788899999999999999999999999975 588999999999988888888888888888888877766655555
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHccccCCceeeecccc
Q 012126 381 ALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVEIKGDTRIVEAGIG 454 (470)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~~~ 454 (470)
+|+++|+++|++++|.++|+++ .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..++..++.
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 597 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Confidence 5555555555555555555444 24555555555555555555555555555555555555555544443
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.8e-51 Score=422.29 Aligned_cols=385 Identities=15% Similarity=0.148 Sum_probs=316.0
Q ss_pred CCCChHHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHH
Q 012126 58 PIGSPCRVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLI 137 (470)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 137 (470)
...+.+.+...+.+.|++++|+++|+.+... ++.|+..||+.++.+|++.|+++.+.+++..+.+.|+.|+..+|+.|+
T Consensus 252 d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li 330 (857)
T PLN03077 252 DCISWNAMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI 330 (857)
T ss_pred CcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHH
Confidence 3345678889999999999999999999854 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 012126 138 KIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDI 217 (470)
Q Consensus 138 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 217 (470)
.+|++.|++++|.++|++|.. ||..+|+.++..+.+ .|++++|+++|++|.+.|+.||..+|+.++.+|++.|++
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~-~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~ 405 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEK-NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHh-CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchH
Confidence 999999999999999888854 677788888888874 455888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC------------------------------CC
Q 012126 218 SIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNK------------------------------GF 267 (470)
Q Consensus 218 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------------------------------~~ 267 (470)
+.|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+. ++
T Consensus 406 ~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~ 485 (857)
T PLN03077 406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL 485 (857)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 888888888888888777777777777777777777777777766532 23
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHH
Q 012126 268 VPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTL 347 (470)
Q Consensus 268 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 347 (470)
.||..+|+.++.+|++.|+++.+.+++..+.+.|+.++..++|+||.+|++.|++++|.++|+.+ .||..+|+++
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~l 560 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNIL 560 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHH
Confidence 44444444444444444444444444444444455555555566667777777778888777776 4789999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHcCCc
Q 012126 348 VGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELL-KAGEAPHEDTWVMIVPQICAGEE 426 (470)
Q Consensus 348 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~ 426 (470)
|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.++.+|++.|+
T Consensus 561 I~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 561 LTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999998 67999999999999999999999
Q ss_pred HHHHHHHHHHHHHccccCCceeeecccchh
Q 012126 427 MEKLGEVLNEIVKVEIKGDTRIVEAGIGLE 456 (470)
Q Consensus 427 ~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~ 456 (470)
+++|.+++++| .++||..++..++..+
T Consensus 641 ~~eA~~~~~~m---~~~pd~~~~~aLl~ac 667 (857)
T PLN03077 641 LTEAYNFINKM---PITPDPAVWGALLNAC 667 (857)
T ss_pred HHHHHHHHHHC---CCCCCHHHHHHHHHHH
Confidence 99999999998 4789998888888755
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=2.8e-23 Score=218.55 Aligned_cols=366 Identities=14% Similarity=0.060 Sum_probs=257.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 012126 63 CRVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAE 142 (470)
Q Consensus 63 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 142 (470)
..+..++...|+++.|.+.|+.+.... +.+..++..+...+.+.|++++|..+++.+...+ +.+...+..++..|..
T Consensus 503 ~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 579 (899)
T TIGR02917 503 ANLARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLG 579 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHH
Confidence 345566777888888888888776543 3466777777777888888888888888876664 5566677777888888
Q ss_pred cCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 012126 143 SNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYT 222 (470)
Q Consensus 143 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 222 (470)
.|++++|+++++.+.... ..+...+..+...+. ..|++++|...|+++.+... .+...+..+...+...|++++|..
T Consensus 580 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 656 (899)
T TIGR02917 580 KGQLKKALAILNEAADAA-PDSPEAWLMLGRAQL-AAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAIT 656 (899)
T ss_pred CCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888777632 223444444444443 55667888888888776543 256667777777878888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012126 223 LFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGC 302 (470)
Q Consensus 223 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 302 (470)
+|+++.+.... +..++..+...+...|++++|.++++.+.+.+.. +...+..+...+.+.|++++|...|+.+...
T Consensus 657 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-- 732 (899)
T TIGR02917 657 SLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKR-- 732 (899)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 88877765432 5677777777777788888888888777766533 5566777777777778888888887777765
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012126 303 NPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHAL 382 (470)
Q Consensus 303 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 382 (470)
.|+..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|...|++++|..+|+++.+.. +.+..+++.+
T Consensus 733 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l 810 (899)
T TIGR02917 733 APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNL 810 (899)
T ss_pred CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3444666667777777777777777777776653 3456677777777777777777777777777653 4456677777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHccc
Q 012126 383 IKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVEI 442 (470)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 442 (470)
...+...|+ ++|...++++.+... -+..++..+...+...|++++|.++++++++.+.
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 777777777 667777777766432 2445666677777777777777777777776543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=5.5e-23 Score=216.29 Aligned_cols=361 Identities=13% Similarity=0.066 Sum_probs=174.3
Q ss_pred HHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 012126 66 QKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNL 145 (470)
Q Consensus 66 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 145 (470)
...+...|+++.|+++++.+.... +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~ 514 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGN 514 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCC
Confidence 344444555555555555444322 2344445555555555555555555555544432 3334444444555555555
Q ss_pred chhHHHHHHHHHhCCCccCHHHHHHHHHHH---------------------------------HhcCCChhhHHHHHHHH
Q 012126 146 PDRALKTFRSMLEFNCKPLPKQLNRILELL---------------------------------VTHRNYLRPAFDLFKSA 192 (470)
Q Consensus 146 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~---------------------------------~~~~~~~~~a~~~~~~~ 192 (470)
+++|.+.|+++...+ ..+...+..+...+ +...|++++|..+++.+
T Consensus 515 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 515 PDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 555555555544422 11122222222222 22333445555555544
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHh
Q 012126 193 HKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTL 272 (470)
Q Consensus 193 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 272 (470)
.+... .+...|..+..++...|++++|...|+++.+... .+...+..+..++...|++++|...++++.+.... +..
T Consensus 594 ~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 670 (899)
T TIGR02917 594 ADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTE 670 (899)
T ss_pred HHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHH
Confidence 43321 2444455555555555555555555555544322 13344444455555555555555555555443322 344
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 012126 273 SYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLC 352 (470)
Q Consensus 273 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 352 (470)
++..+...+...|++++|..+++.+.+.+ +.+...+..+...+.+.|++++|...|+.+...+ |+..++..+..++.
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 747 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALL 747 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHH
Confidence 44555555555555555555555554442 2234444555555555555555555555555432 33344444555555
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHH
Q 012126 353 DQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGE 432 (470)
Q Consensus 353 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 432 (470)
+.|++++|.+.++.+.+.. +.+...+..+...|...|++++|.+.|+++.+.+ +.+...+..+...+...|+ ++|+.
T Consensus 748 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~ 824 (899)
T TIGR02917 748 ASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALE 824 (899)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHH
Confidence 5555555555555555532 3344555555555555556666666655555543 2344555555555555555 55555
Q ss_pred HHHHHHH
Q 012126 433 VLNEIVK 439 (470)
Q Consensus 433 ~~~~m~~ 439 (470)
.++++.+
T Consensus 825 ~~~~~~~ 831 (899)
T TIGR02917 825 YAEKALK 831 (899)
T ss_pred HHHHHHh
Confidence 5555553
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.4e-21 Score=185.08 Aligned_cols=302 Identities=16% Similarity=0.121 Sum_probs=227.4
Q ss_pred HHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCC
Q 012126 140 YAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLP---NTKSYNIMMRAFCFNGD 216 (470)
Q Consensus 140 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~ 216 (470)
+...|++++|+..|.++.+. .|+.......+..++...|++++|..+++.+.+.+..+ ....+..+...|...|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34555666666666666553 23333333333333334555666666666655532211 12467788888999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCHHHHHH
Q 012126 217 ISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDT----LSYTTLLNSLCRKKKLREAYK 292 (470)
Q Consensus 217 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~ 292 (470)
+++|..+|+++.+.. ..+..++..++..+.+.|++++|++.++.+.+.+..++. ..+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999988763 336778888999999999999999999998876544322 245567778888999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 012126 293 LLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGF 372 (470)
Q Consensus 293 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 372 (470)
.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++.+.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 999998763 33456777888999999999999999999987543223466788899999999999999999999886
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---CCcHHHHHHHHHHHHHccccCCceee
Q 012126 373 SPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICA---GEEMEKLGEVLNEIVKVEIKGDTRIV 449 (470)
Q Consensus 373 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~ 449 (470)
.|+...+..++..+.+.|++++|..+++++++. .|+..++..++..+.. .|+.+++..++++|.+.++.|++...
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 466667788899999999999999999999885 4888899888887764 56899999999999998888887644
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=5.3e-21 Score=181.11 Aligned_cols=302 Identities=15% Similarity=0.089 Sum_probs=241.2
Q ss_pred HHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCH---HHHHHHHHHHHhcC
Q 012126 103 LKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLP---KQLNRILELLVTHR 179 (470)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~~ 179 (470)
..+...|++++|...+.++.+.+ |.+..++..+...+...|++++|..+++.+...+..++. ..+..+ ...+...
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L-a~~~~~~ 120 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL-GQDYLKA 120 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HHHHHHC
Confidence 34567788999999999998875 556778888999999999999999999988875322221 223333 3344466
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCChHHH
Q 012126 180 NYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDV----ESYRILMQGLCRKSQVNRA 255 (470)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a 255 (470)
|++++|..+|+++.+... .+..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 779999999999987643 46788999999999999999999999999887644322 2355677788899999999
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhC
Q 012126 256 VDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSN 335 (470)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 335 (470)
+..|+++.+.... +...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999876533 566788888999999999999999999987632222456888999999999999999999998885
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHCCCCCCHH
Q 012126 336 GCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCN---VGKVDEACGVLEELLKAGEAPHED 412 (470)
Q Consensus 336 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~ 412 (470)
.|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..++++|.+.++.|++.
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 466667788899999999999999999998885 6888888888877664 568999999999999887777766
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=2e-18 Score=172.19 Aligned_cols=368 Identities=13% Similarity=0.004 Sum_probs=286.6
Q ss_pred HHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 012126 65 VQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESN 144 (470)
Q Consensus 65 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 144 (470)
.+..+...|+++.|+..|+.+... .|++..|..+...+.+.|++++|.+.+....+.. |.+..++..+..+|...|
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 345667789999999999998865 3567889999999999999999999999998876 667889999999999999
Q ss_pred CchhHHHHHHHHHhCCC----------------------------c----cCHHHHHHHHHH------------------
Q 012126 145 LPDRALKTFRSMLEFNC----------------------------K----PLPKQLNRILEL------------------ 174 (470)
Q Consensus 145 ~~~~A~~~~~~~~~~~~----------------------------~----p~~~~~~~ll~~------------------ 174 (470)
++++|+.-|..+...+- . |........+..
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 99999876654432110 0 000000000000
Q ss_pred ---------H-----HhcCCChhhHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 012126 175 ---------L-----VTHRNYLRPAFDLFKSAHKHG-VLP-NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVES 238 (470)
Q Consensus 175 ---------~-----~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 238 (470)
. ....+.+++|...|+...+.+ ..| +...|+.+...+...|++++|+..|++.++.... +...
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~ 367 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQS 367 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHH
Confidence 0 012245788999999998765 223 4567888889999999999999999999887433 4668
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 012126 239 YRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCR 318 (470)
Q Consensus 239 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 318 (470)
|..+...+...|++++|+..|+++.+.... +..++..+...+...|++++|...|++..+.. +.+...+..+...+.+
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHH
Confidence 888899999999999999999999887544 67888899999999999999999999998873 3356778888899999
Q ss_pred cCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHccCCH
Q 012126 319 EGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHF------SVSHALIKGFCNVGKV 392 (470)
Q Consensus 319 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~ 392 (470)
.|++++|+..|++..+.. +.+...++.+...+...|++++|.+.|++.++..-..+. ..++.....+...|++
T Consensus 446 ~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred CCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 999999999999988752 335778888999999999999999999999875321111 1222223334457999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcc
Q 012126 393 DEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVE 441 (470)
Q Consensus 393 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 441 (470)
++|.+++++.++.+. .+...+..+...+.+.|++++|++.|++..+..
T Consensus 525 ~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 525 IEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 999999999888652 244578899999999999999999999998653
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=1.7e-18 Score=172.17 Aligned_cols=331 Identities=10% Similarity=0.027 Sum_probs=250.1
Q ss_pred HHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 012126 64 RVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAES 143 (470)
Q Consensus 64 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 143 (470)
.+...+...|++..|+.+++.+.... +.+...+..++..+...|++++|...++.+.... |.+...+..+...+...
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 44556677899999999988887654 3445566666667777899999999999988875 66778888888899999
Q ss_pred CCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 012126 144 NLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTL 223 (470)
Q Consensus 144 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 223 (470)
|++++|++.++++.. ..|+.......+..++...|+.++|...++.+...... +...+..+ ..+...|++++|..+
T Consensus 124 g~~~~Ai~~l~~Al~--l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 124 KQYATVADLAEQAWL--AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred CCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 999999999998887 35665555555555566777889999999888765533 33333333 347788999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH----HHHHHHHHHH
Q 012126 224 FNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLRE----AYKLLCRMKV 299 (470)
Q Consensus 224 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~m~~ 299 (470)
++.+.+....++...+..+..++...|++++|+..++++...... +...+..+..++...|++++ |...|++..+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 988877654445555556677888889999999999998877544 66777788888888898885 7888888887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HH
Q 012126 300 KGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHF-SV 378 (470)
Q Consensus 300 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~ 378 (470)
.. +.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+..++.+.|++++|...++.+.+. .|+. ..
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~ 354 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKW 354 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHH
Confidence 63 3356778888888899999999999999888753 224556677788888899999999999888875 3443 33
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 012126 379 SHALIKGFCNVGKVDEACGVLEELLKAG 406 (470)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (470)
+..+..++...|+.++|...|++..+..
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4445667888899999999999887753
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=6.2e-20 Score=167.21 Aligned_cols=365 Identities=12% Similarity=0.064 Sum_probs=260.5
Q ss_pred HHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 012126 65 VQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESN 144 (470)
Q Consensus 65 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 144 (470)
+..+++..|+...|+.+++.+.+.. +...+.|..+..++...|+.+.|.+.|....+.. |....+...+.......|
T Consensus 122 ~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgnLlka~G 198 (966)
T KOG4626|consen 122 LANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGNLLKAEG 198 (966)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhHHHHhhc
Confidence 4555666666666666666665443 2345566666666666666666666666665543 222223333445555566
Q ss_pred CchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 012126 145 LPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLF 224 (470)
Q Consensus 145 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 224 (470)
+..+|...|.+.++ ..|.-...-+-|.......|+...|+..|++..+.+.. =...|..|...|...+.+++|...|
T Consensus 199 rl~ea~~cYlkAi~--~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 199 RLEEAKACYLKAIE--TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred ccchhHHHHHHHHh--hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHH
Confidence 66666666666655 23333222222333344556666777777776665421 2456677777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 012126 225 NKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNP 304 (470)
Q Consensus 225 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 304 (470)
.+....... ....+..+...|...|+.+.|+..|++.++..+. -...|+.|..++-..|++.+|++.+.+..... .-
T Consensus 276 ~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~ 352 (966)
T KOG4626|consen 276 LRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PN 352 (966)
T ss_pred HHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-Cc
Confidence 766554322 4566666777777888888888888888876443 35789999999999999999999999988763 22
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 012126 305 DIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPN-LVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPH-FSVSHAL 382 (470)
Q Consensus 305 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l 382 (470)
-..+.+.|...|.+.|.+++|..+|....+- .|. ....+.|...|.+.|++++|+..+++.++ +.|+ ...|+.+
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~Nm 428 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNM 428 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhc
Confidence 4677888999999999999999999988773 344 45678899999999999999999999988 5666 4588899
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHccccCCc
Q 012126 383 IKGFCNVGKVDEACGVLEELLKAGEAPH-EDTWVMIVPQICAGEEMEKLGEVLNEIVKVEIKGDT 446 (470)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 446 (470)
...|-..|+.+.|.+.+.+.+..+ |. .+.++.|...|...|+..+|++-+++.++ ++||.
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 999999999999999999998844 55 45888999999999999999999999995 55654
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=1.9e-18 Score=171.85 Aligned_cols=361 Identities=12% Similarity=0.063 Sum_probs=285.8
Q ss_pred hcCCChHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchh
Q 012126 70 ASQSDPLLAKEIFDYASRQP-NFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDR 148 (470)
Q Consensus 70 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 148 (470)
.++.||+.---.|....... .-..+......++..+.+.|++++|..++....... |-+...+..++.+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 45666665544444332211 101233345667788999999999999999998775 6677778888888889999999
Q ss_pred HHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 012126 149 ALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMF 228 (470)
Q Consensus 149 A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 228 (470)
|++.|+++.. ..|+.......+...+...|++++|...+++..+... .+...+..+...+...|++++|...++.+.
T Consensus 95 A~~~l~~~l~--~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 95 VLQVVNKLLA--VNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 9999999998 4577666666777777788889999999999998653 267788899999999999999999999887
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 012126 229 ERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVH 308 (470)
Q Consensus 229 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 308 (470)
..... +...+..+ ..+...|++++|+..++.+.+....++...+..+..++.+.|++++|...+++..... +.+...
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 76544 33344333 3478899999999999998877544455556666788899999999999999998874 345778
Q ss_pred HHHHHHHHHhcCCHhH----HHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012126 309 YNTVVLGFCREGRAID----ACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIK 384 (470)
Q Consensus 309 ~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 384 (470)
+..+...+.+.|++++ |...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 8889999999999986 899999988853 2356788889999999999999999999999864 345667788889
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcCCcHHHHHHHHHHHHHcc
Q 012126 385 GFCNVGKVDEACGVLEELLKAGEAPHED-TWVMIVPQICAGEEMEKLGEVLNEIVKVE 441 (470)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 441 (470)
++.+.|++++|...|+++.+.+ |+.. .+..+..++...|+.++|...|++.++..
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999998854 5543 34445678899999999999999998654
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=1.6e-19 Score=164.57 Aligned_cols=366 Identities=13% Similarity=0.067 Sum_probs=308.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhhcCCCC--------------------------------CCCHHHHHHHHHHHHccCC
Q 012126 63 CRVQKLIASQSDPLLAKEIFDYASRQPNF--------------------------------RHSNSTYLILILKLGRAKY 110 (470)
Q Consensus 63 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------------------------------~~~~~~~~~ll~~~~~~~~ 110 (470)
..+...+-+.||+.+|.+....+-+.++. +.-.++|..+...+-..|+
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 34445556778888888776655332210 1123578888899999999
Q ss_pred chHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHH
Q 012126 111 FSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFK 190 (470)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~ 190 (470)
++.|..+++.+++.. |.....|..+..++...|+.+.|.+.|.+.++ +.|+.....+-+..+.+..|++++|...|.
T Consensus 132 ~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 132 LQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 999999999999886 66788999999999999999999999999988 569888888889999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC
Q 012126 191 SAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPD 270 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 270 (470)
+.++.... =.+.|..|...+-..|++..|+..|++..+..+. -...|-.|...|...+.+++|...|.+....... .
T Consensus 209 kAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~ 285 (966)
T KOG4626|consen 209 KAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-H 285 (966)
T ss_pred HHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-c
Confidence 98876432 3567999999999999999999999999887533 3578888999999999999999999998876433 5
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHH
Q 012126 271 TLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPD-IVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVG 349 (470)
Q Consensus 271 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 349 (470)
..++..+...|...|.++.|++.+++.++. .|+ ...|+.|..++-..|++.+|.+.|++..... .-.....+.|..
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgn 362 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGN 362 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 678888888999999999999999999886 455 6789999999999999999999999988852 234567888999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCcH
Q 012126 350 GLCDQGMFDVAKKYMQLMISKGFSPH-FSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHE-DTWVMIVPQICAGEEM 427 (470)
Q Consensus 350 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 427 (470)
.+...|.+++|..+|....+- .|. ....+.|...|-..|++++|...|++.++ ++|+. ..|+.+...|-..|+.
T Consensus 363 i~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhH
Confidence 999999999999999999884 444 45788999999999999999999999998 66775 5899999999999999
Q ss_pred HHHHHHHHHHHHcc
Q 012126 428 EKLGEVLNEIVKVE 441 (470)
Q Consensus 428 ~~a~~~~~~m~~~~ 441 (470)
+.|.+.+...+..+
T Consensus 439 ~~A~q~y~rAI~~n 452 (966)
T KOG4626|consen 439 SAAIQCYTRAIQIN 452 (966)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998543
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=2.5e-17 Score=174.92 Aligned_cols=361 Identities=13% Similarity=0.006 Sum_probs=214.3
Q ss_pred HHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCC-CHHHH-----------
Q 012126 66 QKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPV-TPSLF----------- 133 (470)
Q Consensus 66 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~----------- 133 (470)
...+...|+++.|+..|+.+.... +.+...+..+...+.+.|++++|...|++..+..-.. ....+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 455677899999999999887654 4577888888999999999999999999887764111 11111
Q ss_pred -HHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH-
Q 012126 134 -TYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAF- 211 (470)
Q Consensus 134 -~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~- 211 (470)
..+...+.+.|++++|++.|+++.+. .|+.......+..++...|++++|++.|+++.+.... +...+..+...|
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~ 430 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 12345677889999999999998874 4555444445566666778899999999998876532 344444444433
Q ss_pred -----------------------------------------HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 012126 212 -----------------------------------------CFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKS 250 (470)
Q Consensus 212 -----------------------------------------~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 250 (470)
...|++++|.+.|++..+..+. +...+..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 3345555555555555544322 3344444555555555
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHHhcCC
Q 012126 251 QVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIV---------HYNTVVLGFCREGR 321 (470)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---------~~~~li~~~~~~~~ 321 (470)
++++|+..++++.+.... +...+..+...+...++.++|...++.+......++.. .+..+...+...|+
T Consensus 510 ~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 555555555555443222 22222222223333444444444444332111111100 01122333445555
Q ss_pred HhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 012126 322 AIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEE 401 (470)
Q Consensus 322 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 401 (470)
.++|..+++. .+.+...+..+...+.+.|++++|+..++++++.. +.+...+..+...|...|++++|.+.++.
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555555541 12344455566667777777777777777777653 33556677777777777777777777776
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 012126 402 LLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 402 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 440 (470)
..+.. +.+...+..+..++...|++++|.++++++++.
T Consensus 663 ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 663 LPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 66532 123455566666777777777777777777654
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.85 E-value=5.1e-17 Score=172.62 Aligned_cols=372 Identities=12% Similarity=0.031 Sum_probs=282.0
Q ss_pred ChHHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHH------------HHHHHHHHccCCchHHHHHHHHHhhCCCCC
Q 012126 61 SPCRVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTY------------LILILKLGRAKYFSLIDDILITLKSEHYPV 128 (470)
Q Consensus 61 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 128 (470)
....+..++...|++++|+..|+.+.+...-.+....+ ......+.+.|++++|...++++.... |.
T Consensus 305 a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~ 383 (1157)
T PRK11447 305 ALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NT 383 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 34566788889999999999999987643211221111 122456778999999999999998875 66
Q ss_pred CHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCH-HHHHHHHH----------------------------------
Q 012126 129 TPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLP-KQLNRILE---------------------------------- 173 (470)
Q Consensus 129 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~---------------------------------- 173 (470)
+...+..+..++...|++++|++.|+++.+.. |+. ..+..+..
T Consensus 384 ~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~ 461 (1157)
T PRK11447 384 DSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQN 461 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 77888889999999999999999999988743 432 22211111
Q ss_pred -------HHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012126 174 -------LLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGL 246 (470)
Q Consensus 174 -------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 246 (470)
..+...|++++|+..|++..+.... +...+..+...|.+.|++++|...++++.+.... +...+..+...+
T Consensus 462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l 539 (1157)
T PRK11447 462 DRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYL 539 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 1122467799999999999987643 6777888999999999999999999999876433 455555555667
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHh---------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012126 247 CRKSQVNRAVDLLEDMLNKGFVPDTL---------SYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFC 317 (470)
Q Consensus 247 ~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 317 (470)
...++.++|+..++.+......++.. .+..+...+...|+.++|..+++. .+.+...+..+...+.
T Consensus 540 ~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~ 614 (1157)
T PRK11447 540 SGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQ 614 (1157)
T ss_pred HhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHH
Confidence 78899999999998865433222221 123456678889999999999882 2446667788889999
Q ss_pred hcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 012126 318 REGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACG 397 (470)
Q Consensus 318 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 397 (470)
+.|++++|+..|++..+.. +.+...+..++..+...|++++|++.++.+.+.. +.+...+..+..++...|++++|.+
T Consensus 615 ~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 615 QRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999998863 3357788899999999999999999999887752 2345667778888999999999999
Q ss_pred HHHHHHHCCCC--C---CHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-ccccC
Q 012126 398 VLEELLKAGEA--P---HEDTWVMIVPQICAGEEMEKLGEVLNEIVK-VEIKG 444 (470)
Q Consensus 398 ~~~~~~~~~~~--p---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~p 444 (470)
++++++..... | +...+..+...+...|+.++|++.+++.+. .++.|
T Consensus 693 ~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 693 TFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 99999875322 2 224666778889999999999999999864 34443
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=3.2e-16 Score=159.36 Aligned_cols=370 Identities=11% Similarity=0.018 Sum_probs=238.5
Q ss_pred HHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 012126 66 QKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNL 145 (470)
Q Consensus 66 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 145 (470)
..+..-.|+.++|++++....... +.+...+..+...+.+.|++++|..+++...+.. |.++..+..++..+...|+
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 344555666666666666554322 2334455566666666666666666666655543 4445555556666666666
Q ss_pred chhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh--------
Q 012126 146 PDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDI-------- 217 (470)
Q Consensus 146 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-------- 217 (470)
+++|+..++++.+. .|+... ...+..+....|+.++|+..++++.+..+. +...+..+...+...|..
T Consensus 99 ~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 99 YDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred HHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 66666666666553 333333 333344444555566666666666654432 333444444444444443
Q ss_pred --------------------------------------hHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHHcCChH
Q 012126 218 --------------------------------------SIAYTLFNKMFER-GVMPDVE-SY----RILMQGLCRKSQVN 253 (470)
Q Consensus 218 --------------------------------------~~a~~~~~~m~~~-~~~p~~~-~~----~~ll~~~~~~~~~~ 253 (470)
++|++.++.+.+. ...|+.. .+ ...+.++...|+++
T Consensus 175 ~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 175 DANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 3455555555533 1122211 11 11134456778999
Q ss_pred HHHHHHHHHHhCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHhHHHHHH
Q 012126 254 RAVDLLEDMLNKGFV-PDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNP---DIVHYNTVVLGFCREGRAIDACKVL 329 (470)
Q Consensus 254 ~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~ 329 (470)
+|+..|+.+.+.+.. |+. .-..+..+|...|++++|+..|+++.+..... .......+..++.+.|++++|..++
T Consensus 255 eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred HHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999999887642 332 22335778999999999999999987652111 1244566677889999999999999
Q ss_pred HhchhCCC-----------CCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 012126 330 EDMPSNGC-----------LPN---LVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEA 395 (470)
Q Consensus 330 ~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 395 (470)
+.+.+... .|+ ...+..+...+...|++++|+++++++.... +.+...+..+...+...|++++|
T Consensus 334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A 412 (765)
T PRK10049 334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAA 412 (765)
T ss_pred HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 99876521 123 2245567778889999999999999998863 55677888999999999999999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHccccCCcee
Q 012126 396 CGVLEELLKAGEAPH-EDTWVMIVPQICAGEEMEKLGEVLNEIVKVEIKGDTRI 448 (470)
Q Consensus 396 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 448 (470)
++.+++.++.. |+ ...+..++..+...|++++|..+++++++. .|+...
T Consensus 413 ~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~ 462 (765)
T PRK10049 413 ENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPG 462 (765)
T ss_pred HHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHH
Confidence 99999998854 44 567777788889999999999999999864 455543
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=2.6e-16 Score=157.10 Aligned_cols=342 Identities=11% Similarity=-0.031 Sum_probs=255.5
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 012126 97 TYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLV 176 (470)
Q Consensus 97 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 176 (470)
.+......+.+.|++++|...|++.+... |++..|..+..+|.+.|++++|++.++..++. .|+.......+..++
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 35566778889999999999999988764 57888999999999999999999999999884 465544444445555
Q ss_pred hcCCChhhHHHHHHHHHHCCCC----------------------------C----CHHHHHHH-----------------
Q 012126 177 THRNYLRPAFDLFKSAHKHGVL----------------------------P----NTKSYNIM----------------- 207 (470)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~----------------------------~----~~~~~~~l----------------- 207 (470)
...|++++|+..|......+.. | ........
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 5777788887766544322110 0 00000000
Q ss_pred ----------HHHH------HhcCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 012126 208 ----------MRAF------CFNGDISIAYTLFNKMFERG-VMP-DVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVP 269 (470)
Q Consensus 208 ----------i~~~------~~~g~~~~a~~~~~~m~~~~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 269 (470)
+..+ ...+++++|.+.|++..+.+ ..| ....+..+...+...|++++|+..+++..+....
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~- 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR- 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-
Confidence 0000 12357889999999988765 223 4567888888899999999999999999887543
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHH
Q 012126 270 DTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVG 349 (470)
Q Consensus 270 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 349 (470)
+...|..+..++...|++++|...|++..+.. +.+...|..+...+...|++++|+..|++..+.. +.+...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHH
Confidence 46678888899999999999999999998763 3457888899999999999999999999998853 235667778888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHc
Q 012126 350 GLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHED------TWVMIVPQICA 423 (470)
Q Consensus 350 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~~~l~~~~~~ 423 (470)
.+.+.|++++|+..+++.++. .+.+...++.+...+...|++++|.+.|++.++.....+.. .++..+..+..
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 999999999999999999875 24457889999999999999999999999998753221111 11222223445
Q ss_pred CCcHHHHHHHHHHHHHccccCCcee
Q 012126 424 GEEMEKLGEVLNEIVKVEIKGDTRI 448 (470)
Q Consensus 424 ~g~~~~a~~~~~~m~~~~~~p~~~~ 448 (470)
.|++++|.+++++.++. .|+...
T Consensus 521 ~~~~~eA~~~~~kAl~l--~p~~~~ 543 (615)
T TIGR00990 521 KQDFIEAENLCEKALII--DPECDI 543 (615)
T ss_pred hhhHHHHHHHHHHHHhc--CCCcHH
Confidence 79999999999999865 455544
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=8.5e-15 Score=146.44 Aligned_cols=363 Identities=13% Similarity=0.102 Sum_probs=161.9
Q ss_pred HHHHhcCCChHHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 012126 66 QKLIASQSDPLLAKEIFDYASRQPNFRHSN-STYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESN 144 (470)
Q Consensus 66 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 144 (470)
..+..++|++..|++.|+.+.+.. +.+. ..+ .++..+...|+.++|...+++..... +........+...|...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcC
Confidence 344455666666666666555433 1111 122 44455555566666666555555211 222233333344555556
Q ss_pred CchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 012126 145 LPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLF 224 (470)
Q Consensus 145 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 224 (470)
++++|+++|+++.+. .|+.......+...+...+..++|++.++++.... |+...+..++..+...++..+|++.+
T Consensus 117 dyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 117 RWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred CHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHH
Confidence 666666666665553 23322222222233333444555555555555442 33333323333333334443455555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH--------------------------------------------
Q 012126 225 NKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLE-------------------------------------------- 260 (470)
Q Consensus 225 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~-------------------------------------------- 260 (470)
+++.+..+. +...+..++.+..+.|-...|.++..
T Consensus 193 ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 193 SEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 555554322 33333333333333333222222221
Q ss_pred ----HHHhC-CCCCCH-hhH-H---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 012126 261 ----DMLNK-GFVPDT-LSY-T---TLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLE 330 (470)
Q Consensus 261 ----~~~~~-~~~~~~-~~~-~---~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 330 (470)
.+... +..|.. ..| . -.+-++...|++.++++.++.+...|.+....+-..+..+|...+++++|+.+++
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 11110 011111 001 1 1122344455555555555555555544344455555555555555555555555
Q ss_pred hchhCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHccCC
Q 012126 331 DMPSNG-----CLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGF-----------SPH---FSVSHALIKGFCNVGK 391 (470)
Q Consensus 331 ~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~ 391 (470)
.+.... ..++......|..++...+++++|..+++.+.+... .|| ...+..++..+...|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence 554321 111222234455555555555555555555554200 111 1122233444555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 012126 392 VDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIV 438 (470)
Q Consensus 392 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 438 (470)
+.+|++.++++.... +-|......+...+...|.+.+|.+.++.+.
T Consensus 432 l~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 432 LPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 555555555555443 2244555555555555555555555554444
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=4.9e-15 Score=150.71 Aligned_cols=355 Identities=12% Similarity=0.029 Sum_probs=261.4
Q ss_pred CCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHH
Q 012126 92 RHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRI 171 (470)
Q Consensus 92 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 171 (470)
+.++.-..-.+......|+.++|++++....... +.+...+..+...+...|++++|.+.|++.++. .|+.......
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~ 88 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRG 88 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 4566666677778899999999999999998643 567778999999999999999999999998874 4655555555
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 012126 172 LELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQ 251 (470)
Q Consensus 172 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 251 (470)
+..+....|+.++|...++++.+.... +.. +..+..++...|+.++|+..++++.+..+. +...+..+..++...+.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCC
Confidence 555555778899999999999987533 556 888899999999999999999999987554 55555566666666666
Q ss_pred hHHHHHHH----------------------------------------------HHHHhC-CCCCCHh-hHH----HHHH
Q 012126 252 VNRAVDLL----------------------------------------------EDMLNK-GFVPDTL-SYT----TLLN 279 (470)
Q Consensus 252 ~~~a~~~~----------------------------------------------~~~~~~-~~~~~~~-~~~----~ll~ 279 (470)
.+.|++.+ +.+.+. ...|+.. .+. ..+.
T Consensus 166 ~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 166 SAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 55544443 333322 1112211 111 1123
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCC---CHHHHHHHHHHHHhcC
Q 012126 280 SLCRKKKLREAYKLLCRMKVKGCN-PDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLP---NLVSYRTLVGGLCDQG 355 (470)
Q Consensus 280 ~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g 355 (470)
++...|++++|+..|+.+.+.+.+ |+. .-..+...|...|++++|+..|+++.+..... .......+..++...|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 445779999999999999887532 322 22225678999999999999999987643111 1345666777889999
Q ss_pred ChHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012126 356 MFDVAKKYMQLMISKGF-----------SPH---FSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQI 421 (470)
Q Consensus 356 ~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 421 (470)
++++|..+++.+.+..- .|+ ...+..+...+...|++++|+++++++.... +-+...+..+...+
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~ 403 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVL 403 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 99999999999987521 123 2345567778889999999999999998864 34677889999999
Q ss_pred HcCCcHHHHHHHHHHHHHccccCCceeeecccchh
Q 012126 422 CAGEEMEKLGEVLNEIVKVEIKGDTRIVEAGIGLE 456 (470)
Q Consensus 422 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~ 456 (470)
...|++++|++.++++++ ..||...+.......
T Consensus 404 ~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~ 436 (765)
T PRK10049 404 QARGWPRAAENELKKAEV--LEPRNINLEVEQAWT 436 (765)
T ss_pred HhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHH
Confidence 999999999999999995 457765554444443
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=2.8e-14 Score=142.80 Aligned_cols=373 Identities=12% Similarity=0.069 Sum_probs=282.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 012126 64 RVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAES 143 (470)
Q Consensus 64 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 143 (470)
.+..++...|+.++|+..++... .+. +........+...+...|++++|.++++++.+.. |.++.++..++..|...
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~-~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ-SSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc-cCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhc
Confidence 55677778899999999999987 221 3344455555678888999999999999999886 66788888899999999
Q ss_pred CCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 012126 144 NLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTL 223 (470)
Q Consensus 144 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 223 (470)
++.++|++.++++... .|+...+ ..+..+....+...+|++.++++.+.... +...+..+...+.+.|-...|.++
T Consensus 150 ~q~~eAl~~l~~l~~~--dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l 225 (822)
T PRK14574 150 GRGGVVLKQATELAER--DPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRL 225 (822)
T ss_pred CCHHHHHHHHHHhccc--CcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHH
Confidence 9999999999999874 4666666 33333333344455699999999987633 566666666777666655444443
Q ss_pred HH------------------------------------------------HHHHC-CCCCCHH-----HHHHHHHHHHHc
Q 012126 224 FN------------------------------------------------KMFER-GVMPDVE-----SYRILMQGLCRK 249 (470)
Q Consensus 224 ~~------------------------------------------------~m~~~-~~~p~~~-----~~~~ll~~~~~~ 249 (470)
.. .+... +..|... ..--.+.++...
T Consensus 226 ~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r 305 (822)
T PRK14574 226 AKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVR 305 (822)
T ss_pred HHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHh
Confidence 33 22221 1112211 122345677788
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCHhH
Q 012126 250 SQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKG-----CNPDIVHYNTVVLGFCREGRAID 324 (470)
Q Consensus 250 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~~~~~~ 324 (470)
++..++++.|+.+...+......+-..+.++|...+.+++|..+++.+.... ..++......|.-+|...+++++
T Consensus 306 ~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~ 385 (822)
T PRK14574 306 HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDK 385 (822)
T ss_pred hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHH
Confidence 9999999999999998876667788899999999999999999999997642 12344446788999999999999
Q ss_pred HHHHHHhchhCCC-----------CC--CH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 012126 325 ACKVLEDMPSNGC-----------LP--NL-VSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVG 390 (470)
Q Consensus 325 a~~~~~~m~~~~~-----------~p--~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 390 (470)
|..+++.+.+... .| |- ..+..++..+...|++.+|++.++++.... +-|..+...+.+.+...|
T Consensus 386 A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg 464 (822)
T PRK14574 386 AYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARD 464 (822)
T ss_pred HHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 9999999987311 12 22 234455777889999999999999998764 668889999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHccccCCce
Q 012126 391 KVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVEIKGDTR 447 (470)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 447 (470)
.+.+|++.++...... +-+..+....+.++...|++++|..+.+...+. .|+..
T Consensus 465 ~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~ 518 (822)
T PRK14574 465 LPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDI 518 (822)
T ss_pred CHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCch
Confidence 9999999998776653 235567788888999999999999999998853 45554
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=8.5e-14 Score=122.32 Aligned_cols=376 Identities=15% Similarity=0.157 Sum_probs=270.5
Q ss_pred hcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH--ccCCchHH-HHHHHHHh-------------------hCCCC
Q 012126 70 ASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLG--RAKYFSLI-DDILITLK-------------------SEHYP 127 (470)
Q Consensus 70 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~-------------------~~~~~ 127 (470)
.+++....+.-+++.+.+.+ ++.++..-..+++.-+ ...+.--+ ++.|-.|. -.-.|
T Consensus 126 IS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P 204 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP 204 (625)
T ss_pred HhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC
Confidence 45677888888888887543 4556655444433221 11111111 11111111 11235
Q ss_pred CCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 012126 128 VTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIM 207 (470)
Q Consensus 128 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 207 (470)
.++.++..+|.+.++-...+.|.+++++......+.+..++|.++.+.....| .+++.+|....+.||..|+|++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~-----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG-----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-----HHHHHHHHHhhcCCchHhHHHH
Confidence 67899999999999999999999999999988889999999999998874444 7899999999999999999999
Q ss_pred HHHHHhcCChhHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHhC----CCC----CCHhhH
Q 012126 208 MRAFCFNGDISIA----YTLFNKMFERGVMPDVESYRILMQGLCRKSQVNR-AVDLLEDMLNK----GFV----PDTLSY 274 (470)
Q Consensus 208 i~~~~~~g~~~~a----~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~----~~~----~~~~~~ 274 (470)
+++..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++... .++ .|...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 9999999988654 6778889999999999999999999999988744 55555555432 222 256678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHH
Q 012126 275 TTLLNSLCRKKKLREAYKLLCRMKVKG----CNPD---IVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTL 347 (470)
Q Consensus 275 ~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 347 (470)
...+..|....|.+.|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|.-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 888899999999999998877665421 2222 233666778888999999999999999988778999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CH--------HH-----HHHHH-------HHHHHCC
Q 012126 348 VGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVG-KV--------DE-----ACGVL-------EELLKAG 406 (470)
Q Consensus 348 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--------~~-----a~~~~-------~~~~~~~ 406 (470)
+++..-.|.++-.-++|..++..|...+...-.-++..+++.. .. .. |..++ .+|.+
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~-- 517 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA-- 517 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--
Confidence 9999999999999999999988876656555555555555544 11 11 11111 12222
Q ss_pred CCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcccc-CCceeeeccc
Q 012126 407 EAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVEIK-GDTRIVEAGI 453 (470)
Q Consensus 407 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~~~ 453 (470)
........+..+-.+.+.|..++|.+++.-+.+++-+ |-...+++++
T Consensus 518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~ 565 (625)
T KOG4422|consen 518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMA 565 (625)
T ss_pred ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHH
Confidence 3345556667777788999999999999998765433 4444455433
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=1e-13 Score=121.78 Aligned_cols=345 Identities=14% Similarity=0.136 Sum_probs=260.5
Q ss_pred CCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHH
Q 012126 92 RHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRI 171 (470)
Q Consensus 92 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 171 (470)
+.++++|..+|..+++--..+.|.+++++........+..+||.+|.+-.-... .+++.+|....+.||..|+|.+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence 457889999999999999999999999999888778999999999987654332 7889999999999999999999
Q ss_pred HHHHHhcCCC---hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHH----CCCCC----CHHHH
Q 012126 172 LELLVTHRNY---LRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISI-AYTLFNKMFE----RGVMP----DVESY 239 (470)
Q Consensus 172 l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~~~~p----~~~~~ 239 (470)
|....+-++. ...|.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. +.++| |..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 9988865542 34578899999999999999999999999999888754 4555555443 22222 45567
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCC----CCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 012126 240 RILMQGLCRKSQVNRAVDLLEDMLNKG----FVPD---TLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTV 312 (470)
Q Consensus 240 ~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 312 (470)
...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+..+.|+....+.....++.|.-.-+-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 788889999999999999887665321 1222 345667788888899999999999999888888999999999
Q ss_pred HHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC-Ch--------H-----HHHHH-------HHHHHHCC
Q 012126 313 VLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQG-MF--------D-----VAKKY-------MQLMISKG 371 (470)
Q Consensus 313 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~--------~-----~a~~~-------~~~~~~~~ 371 (470)
+++..-.|+++-.-++|.++...|..-+......++..+++.. +. . -|..+ -.++.+..
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~ 519 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD 519 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc
Confidence 9999999999999999999988775555544444444444433 11 0 01111 12233333
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHHHHH---HHHHHHHcCCcHHHHHHHHHHHHHccc
Q 012126 372 FSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGE-APHEDTWV---MIVPQICAGEEMEKLGEVLNEIVKVEI 442 (470)
Q Consensus 372 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~---~l~~~~~~~g~~~~a~~~~~~m~~~~~ 442 (470)
+ .....+.+...+.+.|..++|.++|..+.+.+- .|.....+ -++..-...++...|..+++-|...+.
T Consensus 520 ~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 520 W--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred C--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 3 445677788889999999999999999965532 23333344 566667788899999999999976554
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.71 E-value=1.3e-12 Score=133.75 Aligned_cols=365 Identities=11% Similarity=0.027 Sum_probs=226.8
Q ss_pred HHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 012126 66 QKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNL 145 (470)
Q Consensus 66 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 145 (470)
..++..++++..+.++.+ . .|.......-.......+...++...+..+.+.. +-+......+.-.....|+
T Consensus 320 ~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~ 391 (987)
T PRK09782 320 LPVLLKEGQYDAAQKLLA-T------LPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQ 391 (987)
T ss_pred HHHHHhccHHHHHHHHhc-C------CCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccc
Confidence 566677777776665522 1 1222221111112223356666666666665552 3455666666666677777
Q ss_pred chhHHHHHHHHHhC--CCccCHHHHHHHHHHHHhcCC------------------------ChhhHHHHHHHHHHC-CC-
Q 012126 146 PDRALKTFRSMLEF--NCKPLPKQLNRILELLVTHRN------------------------YLRPAFDLFKSAHKH-GV- 197 (470)
Q Consensus 146 ~~~A~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~------------------------~~~~a~~~~~~~~~~-~~- 197 (470)
.++|.++|+..... +..++......+...+..... ...++...++..... +.
T Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 471 (987)
T PRK09782 392 SREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM 471 (987)
T ss_pred HHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC
Confidence 77887777776652 112223333344444433211 111111122222211 11
Q ss_pred CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHH
Q 012126 198 LP--NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYT 275 (470)
Q Consensus 198 ~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (470)
++ +...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|+..|+++... .|+...+.
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~ 546 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLL 546 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHH
Confidence 23 56677777777766 77888888777776653 45444434445556788888888888887554 23334455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC
Q 012126 276 TLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQG 355 (470)
Q Consensus 276 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 355 (470)
.+..++.+.|+.++|...+++..+.. +.+...+..+.....+.|++++|...+++..+. .|+...+..+..++.+.|
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG 623 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCC
Confidence 66677788888888888888887763 222233333333444568888888888888774 466777888888888888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHH
Q 012126 356 MFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLN 435 (470)
Q Consensus 356 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 435 (470)
+.++|+..+++..+.. +.+...++.+..++...|+.++|...+++.++... -+...+..+..++...|++++|...++
T Consensus 624 ~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 624 NVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888888888763 34566777777788888888888888888877542 356677888888888888888888888
Q ss_pred HHHHccccCCceeee
Q 012126 436 EIVKVEIKGDTRIVE 450 (470)
Q Consensus 436 ~m~~~~~~p~~~~~~ 450 (470)
+.++. .|+..-..
T Consensus 702 ~Al~l--~P~~a~i~ 714 (987)
T PRK09782 702 LVIDD--IDNQALIT 714 (987)
T ss_pred HHHhc--CCCCchhh
Confidence 88843 45544433
No 26
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.70 E-value=2.7e-13 Score=127.46 Aligned_cols=285 Identities=11% Similarity=0.014 Sum_probs=220.6
Q ss_pred cCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChhHH
Q 012126 143 SNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYN--IMMRAFCFNGDISIA 220 (470)
Q Consensus 143 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a 220 (470)
.|+++.|.+.+....+.. +.+..+..+........|+.+.+...+.++.+.. |+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHH
Confidence 699999998888765532 2233333333444468888999999999998754 4443322 346788899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHhcCCHHHHHHH
Q 012126 221 YTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDT-------LSYTTLLNSLCRKKKLREAYKL 293 (470)
Q Consensus 221 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~ 293 (470)
...++++.+.++. +...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999988755 6788889999999999999999999999988765322 2333444444455666777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 012126 294 LCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFS 373 (470)
Q Consensus 294 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 373 (470)
++.+.+. .+.++.....+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 7777543 2457778888999999999999999999998874 4555322 3344456699999999999998863 5
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 012126 374 PHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 374 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 440 (470)
-|...+..+...|.+.|++++|.+.|+...+. .|+...+..+..++.+.|+.++|.+++++.+..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56677889999999999999999999999984 599999999999999999999999999988753
No 27
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=3.3e-13 Score=127.58 Aligned_cols=292 Identities=11% Similarity=-0.008 Sum_probs=213.5
Q ss_pred HHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 012126 141 AESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIA 220 (470)
Q Consensus 141 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 220 (470)
...|+++.|.+.+.+..+. .|+...+..+........|+.+.+.+.+.+..+....++....-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3579999999999887764 46655555566666667788999999999987654332333444457888899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHH-HHHHHH---HhcCCHHHHHHHHHH
Q 012126 221 YTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYT-TLLNSL---CRKKKLREAYKLLCR 296 (470)
Q Consensus 221 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~~~~~~a~~~~~~ 296 (470)
...++.+.+..+. +..++..+...+...|++++|.+++..+.+.+.. +...+. .-..++ ...+..+++.+.+..
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999988654 6678889999999999999999999999988765 333332 111222 222333333345555
Q ss_pred HHHcC---CCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHC
Q 012126 297 MKVKG---CNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVS---YRTLVGGLCDQGMFDVAKKYMQLMISK 370 (470)
Q Consensus 297 m~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~ 370 (470)
+.+.. .+.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 44431 11377888889999999999999999999998853 44432 111222234457888899999888875
Q ss_pred CCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 012126 371 GFSPHF--SVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVK 439 (470)
Q Consensus 371 ~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 439 (470)
. +-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 329 ~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 V-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred C-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 3344 667789999999999999999999544433568999999999999999999999999998754
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=2.4e-12 Score=123.45 Aligned_cols=364 Identities=13% Similarity=0.119 Sum_probs=277.5
Q ss_pred HhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchh
Q 012126 69 IASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDR 148 (470)
Q Consensus 69 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 148 (470)
+-..|+.++|..++..+.++. +.....|..|...+-..|+.+++...+-...... |.+...|..+.....+.|++++
T Consensus 149 lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHH
Confidence 345699999999999999887 4678899999999999999999998776665554 6788999999999999999999
Q ss_pred HHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCChhHHHHHH
Q 012126 149 ALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSY----NIMMRAFCFNGDISIAYTLF 224 (470)
Q Consensus 149 A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~a~~~~ 224 (470)
|.-.|.+.++. .|+..-+..==..++...|+...|.+.|.++.......|..-+ -.+++.+...++.+.|.+.+
T Consensus 226 A~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 226 ARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999985 4655444444445666778899999999999987653333333 33456677788889999998
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC---------------------------CCHhhHHH
Q 012126 225 NKMFER-GVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFV---------------------------PDTLSYTT 276 (470)
Q Consensus 225 ~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------~~~~~~~~ 276 (470)
+..... +-..+...+++++..+.+...++.+......+...... ++..++ -
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-r 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-R 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-h
Confidence 887762 33446778889999999999999999988887762111 222221 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc
Q 012126 277 LLNSLCRKKKLREAYKLLCRMKVKG--CNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQ 354 (470)
Q Consensus 277 ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 354 (470)
+.-++......+....+.....+.. ..-++..|.-+..+|.+.|++.+|+.+|..+.....--+...|..+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 2223344444444444555555554 33345678889999999999999999999999876556788999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHcCCc
Q 012126 355 GMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELL--------KAGEAPHEDTWVMIVPQICAGEE 426 (470)
Q Consensus 355 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--------~~~~~p~~~~~~~l~~~~~~~g~ 426 (470)
|..++|.+.|+..+... +-+...--.|...+-+.|+.++|.+.+..+. ..+..|+..........+.+.|+
T Consensus 463 ~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 99999999999999852 3334455667788899999999999999854 23455666666777778899999
Q ss_pred HHHHHHHHHHHHH
Q 012126 427 MEKLGEVLNEIVK 439 (470)
Q Consensus 427 ~~~a~~~~~~m~~ 439 (470)
.++-+.+...|+.
T Consensus 542 ~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 542 REEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHHH
Confidence 9998888777765
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.67 E-value=4.3e-12 Score=129.92 Aligned_cols=360 Identities=11% Similarity=-0.031 Sum_probs=260.0
Q ss_pred CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHHcCCc---
Q 012126 72 QSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSE-H-YPVTPSLFTYLIKIYAESNLP--- 146 (470)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~--- 146 (470)
.+...++.+..+.+.+.. +-+......+.-...+.|+.++|.+++...... + ...+......|+..|.+.+.+
T Consensus 355 ~~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 432 (987)
T PRK09782 355 TRNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATP 432 (987)
T ss_pred cCchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccch
Confidence 456666666666665552 235666666667788899999999999988763 1 233556666888888888763
Q ss_pred hhHHHH----------------------HHHHHh-CCCccC--HHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCH
Q 012126 147 DRALKT----------------------FRSMLE-FNCKPL--PKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNT 201 (470)
Q Consensus 147 ~~A~~~----------------------~~~~~~-~~~~p~--~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 201 (470)
.+++.+ .+.... .+..|+ .......+..+... +..++|...+.+..... |+.
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~ 509 (987)
T PRK09782 433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDA 509 (987)
T ss_pred HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--Cch
Confidence 333222 111111 112233 33333333334333 56888999888877654 565
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 012126 202 KSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSL 281 (470)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 281 (470)
.....+...+...|++++|...|+++... .|+...+..+..++.+.|+.++|...++...+.+.. +...+..+....
T Consensus 510 ~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l 586 (987)
T PRK09782 510 WQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQR 586 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHH
Confidence 44444555667899999999999998655 344455667788889999999999999999887533 333333444445
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 012126 282 CRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAK 361 (470)
Q Consensus 282 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 361 (470)
.+.|++++|...+++..+. .|+...|..+..++.+.|++++|+..+++..+.. +.+...+..+..++...|++++|+
T Consensus 587 ~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 587 YIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred HhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 5669999999999999987 5678889999999999999999999999998863 235667788888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 012126 362 KYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHE-DTWVMIVPQICAGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 440 (470)
..+++..+.. +-+...+..+..++...|++++|+..|++.++.. |+. .+.........+..+++.+.+-++....
T Consensus 664 ~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~- 739 (987)
T PRK09782 664 EMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI--DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT- 739 (987)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh-
Confidence 9999999863 4467788999999999999999999999998854 444 4555666667777888888888887764
Q ss_pred cccCCce
Q 012126 441 EIKGDTR 447 (470)
Q Consensus 441 ~~~p~~~ 447 (470)
+.|+..
T Consensus 740 -~~~~~~ 745 (987)
T PRK09782 740 -FSFDSS 745 (987)
T ss_pred -cCccch
Confidence 445544
No 30
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=8.8e-13 Score=111.98 Aligned_cols=294 Identities=15% Similarity=0.123 Sum_probs=227.3
Q ss_pred cCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhH
Q 012126 143 SNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPN---TKSYNIMMRAFCFNGDISI 219 (470)
Q Consensus 143 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~ 219 (470)
..++++|.+.|-+|.+ ..|.....+.-|..+++++|..+.|+.+.+.+.+..--+. ......|.+-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~--~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ--EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHh--cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 5788999999999988 4577777788889999999999999999999887521111 2344567788999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHH
Q 012126 220 AYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDT----LSYTTLLNSLCRKKKLREAYKLLC 295 (470)
Q Consensus 220 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~ 295 (470)
|+++|..+.+.+.- -......|+..|-...+|++|+++-+++.+.+..+.. ..|.-|...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999886532 5567788999999999999999999999888765442 356666777777889999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 012126 296 RMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPH 375 (470)
Q Consensus 296 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 375 (470)
+..+.+ +..+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+..+.+.. ++
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g 281 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TG 281 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CC
Confidence 988763 223333344567889999999999999999998765556788889999999999999999999998863 33
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---cCCcHHHHHHHHHHHHHccccC
Q 012126 376 FSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQIC---AGEEMEKLGEVLNEIVKVEIKG 444 (470)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~~~~p 444 (470)
...-..+...-....-.+.|...+.+-+.. +|+...+..++..-. ..|...+-..+++.|....++.
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~ 351 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRR 351 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhh
Confidence 334445555444555677777777766664 499999999998654 3456778888888887654443
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=1.3e-15 Score=136.94 Aligned_cols=261 Identities=16% Similarity=0.142 Sum_probs=87.5
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 012126 135 YLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFN 214 (470)
Q Consensus 135 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 214 (470)
.+...+...|++++|++++++.......|+...|..++..++...++.+.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4566677777777777777554443224555556666666666666677777777777665433 45556666665 577
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 012126 215 GDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKG-FVPDTLSYTTLLNSLCRKKKLREAYKL 293 (470)
Q Consensus 215 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~ 293 (470)
+++++|.+++....+.. ++...+..++..+...++++++.++++.+.... ...+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777776655443 345556666777777777777777777765432 234566666677777777777777777
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 012126 294 LCRMKVKGCNP-DIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGF 372 (470)
Q Consensus 294 ~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 372 (470)
+++..+. .| |....+.++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|..++++..+..
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 7777665 33 35566667777777777777666666665542 3344556666777777777777777777766642
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 012126 373 SPHFSVSHALIKGFCNVGKVDEACGVLEELL 403 (470)
Q Consensus 373 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 403 (470)
+.|..+...+.+++...|+.++|.++.++..
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp TT-HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 3466666677777777777777777766553
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=2.2e-12 Score=121.28 Aligned_cols=284 Identities=12% Similarity=0.039 Sum_probs=217.8
Q ss_pred cCCchHHHHHHHHHhhCCCCCCHHHHHHH-HHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHH-HHHHhcCCChhhH
Q 012126 108 AKYFSLIDDILITLKSEHYPVTPSLFTYL-IKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRIL-ELLVTHRNYLRPA 185 (470)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll-~~~~~~~~~~~~a 185 (470)
.|+++.|.+.+....+.. .++..+..+ ..+....|+++.|.+.+.++.+ ..|+......+. ..+....|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHH
Confidence 599999998888765542 234444433 4455789999999999999987 346654433222 4455577889999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCChHHHHHH
Q 012126 186 FDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDV-------ESYRILMQGLCRKSQVNRAVDL 258 (470)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~ 258 (470)
...++++.+..+. +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999987744 7888899999999999999999999999988765332 1333344444455566777777
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCC
Q 012126 259 LEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCL 338 (470)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 338 (470)
++.+.+. .+.+......+...+...|+.++|.+++++..+. .++... .++.+.+..++.+++++..+...+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 7776543 2347778888999999999999999999999885 445422 23444456699999999999988763 3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 012126 339 PNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 339 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (470)
-|...+..+...|.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35667888899999999999999999999985 68989999999999999999999999998754
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=3.2e-12 Score=120.92 Aligned_cols=290 Identities=11% Similarity=0.033 Sum_probs=209.9
Q ss_pred HccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHH-HHHHHHHHHhcCCChhh
Q 012126 106 GRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQ-LNRILELLVTHRNYLRP 184 (470)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~ 184 (470)
...|+++.|.+.+....+.. +.....+-....++...|+++.|.+.+.+..+.. |+... .......+.-..|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 45699999999998877664 2233334455677888899999999999987643 54432 23322333346677999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HHcCChHHHHHHHH
Q 012126 185 AFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYR-ILMQGL---CRKSQVNRAVDLLE 260 (470)
Q Consensus 185 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~---~~~~~~~~a~~~~~ 260 (470)
|...++.+.+..+. +...+..+...+...|++++|.+++..+.+.++. +...+. .-..++ ...+..+++.+.+.
T Consensus 172 Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999988743 7778889999999999999999999999998755 333332 111222 33333343444555
Q ss_pred HHHhCCCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHhHHHHHHHhchh
Q 012126 261 DMLNKGFV---PDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVH---YNTVVLGFCREGRAIDACKVLEDMPS 334 (470)
Q Consensus 261 ~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~ 334 (470)
.+.+.... .+...+..+...+...|+.++|.+++++..+. .|+... ...........++.+.+.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 55544321 37788888999999999999999999999987 344432 11222223445778888888888776
Q ss_pred CCCCCC-H--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 012126 335 NGCLPN-L--VSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 335 ~~~~p~-~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (470)
. .|+ . ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++...
T Consensus 328 ~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 N--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred h--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 344 3 556688899999999999999999644444578988899999999999999999999998643
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.61 E-value=1.2e-11 Score=118.62 Aligned_cols=331 Identities=16% Similarity=0.138 Sum_probs=252.7
Q ss_pred HHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCC
Q 012126 102 ILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNY 181 (470)
Q Consensus 102 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 181 (470)
...+...|++++|.+++.++++.. |.....|.+|...|-..|+.++++..+-..-. ..|....+-..+.-+....|.
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhccc
Confidence 334455599999999999999886 77889999999999999999999887765544 445555555566666667888
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHHcCChHHHHH
Q 012126 182 LRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRI----LMQGLCRKSQVNRAVD 257 (470)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~----ll~~~~~~~~~~~a~~ 257 (470)
++.|.-.|.+.++..+. +...+-.=+..|-+.|+...|.+.|.++.....+.|..-+.. +++.+...++-+.|.+
T Consensus 223 i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999987643 555555667888999999999999999998765434433333 4556777788899999
Q ss_pred HHHHHHhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------------------------CCCHHHH
Q 012126 258 LLEDMLNK-GFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGC---------------------------NPDIVHY 309 (470)
Q Consensus 258 ~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---------------------------~~~~~~~ 309 (470)
.++..... +-..+...++.++..|.+...++.|......+..... .++..+.
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 98887763 2234666788999999999999999988887766211 1222221
Q ss_pred HHHHHHHHhcCCHhHHHHHHHhchhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012126 310 NTVVLGFCREGRAIDACKVLEDMPSNGC--LPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFC 387 (470)
Q Consensus 310 ~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 387 (470)
.++-++...+..+....+.....+.++ .-+...|.-+..++.+.|++.+|+.++..+......-+..+|-.+..+|.
T Consensus 382 -rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 -RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred -hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 122334444555555555555555553 33567888999999999999999999999998765667889999999999
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 012126 388 NVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIV 438 (470)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 438 (470)
..|..++|.+.|+..+... +-+...-..|...+.+.|+.++|.+.++.+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999998853 2244566677788899999999999999986
No 35
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.60 E-value=2.2e-11 Score=106.80 Aligned_cols=292 Identities=15% Similarity=0.055 Sum_probs=228.7
Q ss_pred cCCchhHHHHHHHHHhCCCccCHHHHHHHHH-HHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 012126 143 SNLPDRALKTFRSMLEFNCKPLPKQLNRILE-LLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAY 221 (470)
Q Consensus 143 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 221 (470)
.|++.+|++...+-.+.+-.| ..+.++. ..+...|+.+.+-.++.+..+....++....-+..+.....|+++.|.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p---~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP---VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch---HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 688999998888877655333 2333332 344567788889999988887644556777778888899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHhcCCHHHHHHHH
Q 012126 222 TLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDT-------LSYTTLLNSLCRKKKLREAYKLL 294 (470)
Q Consensus 222 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~ 294 (470)
.-.+++.+.+.. +.........+|.+.|++.....++..+.+.|.-.++ .+|..+++-....+..+.-...+
T Consensus 174 ~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 999999888765 6678889999999999999999999999998876443 45677777666666667766677
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 012126 295 CRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSP 374 (470)
Q Consensus 295 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 374 (470)
+....+ .+-++..-.+++.-+.+.|+.++|.++..+..+.+..|+ -...-.+.+.++.+.-++..++-.+. .+-
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCC
Confidence 776544 234566667788889999999999999999988876666 22233567788888888888777664 234
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHccccCCc
Q 012126 375 HFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVEIKGDT 446 (470)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 446 (470)
++..+.+|...|.+.+.+.+|...|+..++. .|+..+|..+..++.+.|+.++|.++.++.+-.-..|+.
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 5578899999999999999999999988874 599999999999999999999999999998865555543
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=3.3e-11 Score=107.40 Aligned_cols=292 Identities=13% Similarity=0.072 Sum_probs=186.0
Q ss_pred HHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhc
Q 012126 137 IKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVL--PNTKSYNIMMRAFCFN 214 (470)
Q Consensus 137 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~ 214 (470)
..++-...+.+++++-...+...|. |....+.+...++..+..++++|+.+|+++.+.++- -|..+|..++-.--..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf-~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGF-PNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 3444445566666666666666553 444445555555555666688888888888776421 1556666554332221
Q ss_pred CChh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 012126 215 GDIS-IAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKL 293 (470)
Q Consensus 215 g~~~-~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 293 (470)
..+. .|..+++ . . +-...|..++.+-|.-.++.++|...|+..++.+.. ...+|+.+..-|....+...|.+-
T Consensus 313 skLs~LA~~v~~-i--d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 SKLSYLAQNVSN-I--D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHHHH-h--c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 1111 1111111 1 1 123456666777777777888888888888777654 566777777778888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 012126 294 LCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFS 373 (470)
Q Consensus 294 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 373 (470)
++...+-+ +.|-..|-.|.++|.-.+...-|+-.|++..+.. +-|...|.+|.++|.+.++.++|++.|......| .
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 88877763 4466777778888888888888888888777642 2356778888888888888888888888877765 3
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 012126 374 PHFSVSHALIKGFCNVGKVDEACGVLEELLKA----GEAPH--EDTWVMIVPQICAGEEMEKLGEVLNEIV 438 (470)
Q Consensus 374 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 438 (470)
.+...+..|...|-+.++.++|...|++.++. |...+ .....-|..-+.+.+++++|..+.....
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 35567777888888888888888777776542 32222 1122224455566777777776655554
No 37
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.59 E-value=1.3e-11 Score=119.27 Aligned_cols=387 Identities=15% Similarity=0.072 Sum_probs=239.1
Q ss_pred CChHHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 012126 60 GSPCRVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKI 139 (470)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 139 (470)
.+..-+++.+-..||++.|...|-...+..+ ......+..+...+.+.|+++.+...|+.+.... |.+..+...|...
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~-d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKADN-DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccCC-CCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhH
Confidence 3455666777777888888777777665432 1123345556677777778877777777776664 5566666677777
Q ss_pred HHHcC----CchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHH----HCCCCCCHHHHHHHHHHH
Q 012126 140 YAESN----LPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAH----KHGVLPNTKSYNIMMRAF 211 (470)
Q Consensus 140 ~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~ 211 (470)
|+..+ ..+.|..++.+..+.. ..|...|-.+-. +....+ ...++..|.... ..+-.+.....|.+...+
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq-l~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ-LLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH-HHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 76664 3455666666555432 223333333322 222222 333355554433 334345666777777777
Q ss_pred HhcCChhHHHHHHHHHHHC---CCCCCHH------HHHHHHHHHHHcCChHH----------------------------
Q 012126 212 CFNGDISIAYTLFNKMFER---GVMPDVE------SYRILMQGLCRKSQVNR---------------------------- 254 (470)
Q Consensus 212 ~~~g~~~~a~~~~~~m~~~---~~~p~~~------~~~~ll~~~~~~~~~~~---------------------------- 254 (470)
...|++.+|...|...... ...+|.. +--.+...+-..++++.
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~ 542 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARD 542 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHh
Confidence 7777777777777666543 1122221 11122333333344444
Q ss_pred ------HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh---------
Q 012126 255 ------AVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKG-CNPDIVHYNTVVLGFCR--------- 318 (470)
Q Consensus 255 ------a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~--------- 318 (470)
|...+.+....+- .++..++.+.+.+.+...+..|.+-|..+.+.- ..+|..+.-+|.+.|.+
T Consensus 543 k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred ccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 4444444443321 244445555556666666666666555554431 12455555555554432
Q ss_pred ---cCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 012126 319 ---EGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEA 395 (470)
Q Consensus 319 ---~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 395 (470)
.+..++|+++|.+..... +-|...-+-+.-.++..|++.+|..+|....+... -...+|-.+..+|+.+|++..|
T Consensus 622 ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHH
Confidence 345678999998888753 33566667777788899999999999999988643 3445788899999999999999
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHccccCCceeeecccchh
Q 012126 396 CGVLEELLKA-GEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVEIKGDTRIVEAGIGLE 456 (470)
Q Consensus 396 ~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~ 456 (470)
+++|+...+. .-.-+..+...|.+++.+.|++.+|.+.+...+.. .|...++..-+.+.
T Consensus 700 IqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~--~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 700 IQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL--APSNTSVKFNLALV 759 (1018)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCccchHHhHHHHH
Confidence 9999987654 44457788999999999999999999999888854 45544443333333
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=7.3e-13 Score=123.05 Aligned_cols=201 Identities=15% Similarity=0.046 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---
Q 012126 235 DVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNT--- 311 (470)
Q Consensus 235 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--- 311 (470)
...+|.++.++|.-.++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+..+.. |+..||+
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~rhYnAwYG 494 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV----DPRHYNAWYG 494 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC----CchhhHHHHh
Confidence 3455555555555555555555555555444222 4445555544455555555555555554432 3333332
Q ss_pred HHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 012126 312 VVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGK 391 (470)
Q Consensus 312 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 391 (470)
+...|.+.++++.|+-.|++..+-+ +-+.+....+...+.+.|+.|+|+++++++...+. .|+..--.-+..+...++
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRASILFSLGR 572 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHHHHHHhhcc
Confidence 3334555555555555555555432 11333444444445555555555555555554321 122222222333444555
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHccccC
Q 012126 392 VDEACGVLEELLKAGEAPHE-DTWVMIVPQICAGEEMEKLGEVLNEIVKVEIKG 444 (470)
Q Consensus 392 ~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 444 (470)
+++|+..++++.+. .|+. ..+..+...|.+.|+.+.|+.-|.-|.+.+.++
T Consensus 573 ~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 573 YVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred hHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 55555555555542 2332 244444455555555555555555555444333
No 39
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.59 E-value=7e-12 Score=121.16 Aligned_cols=380 Identities=11% Similarity=0.059 Sum_probs=266.3
Q ss_pred CChHHHHHHHhcCCChHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012126 60 GSPCRVQKLIASQSDPLLAKEIFDYASRQPNF-RHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIK 138 (470)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 138 (470)
.-..++...+-.-+|+..+..+...+...... ..-...|-.+.+++-..|++++|...|-......-......+--|..
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQ 350 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQ 350 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhH
Confidence 33456777888899999999999988754311 12345688999999999999999999988877652211334455899
Q ss_pred HHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCC----ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 012126 139 IYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRN----YLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFN 214 (470)
Q Consensus 139 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 214 (470)
.|.+.|+.+.+...|+.... ..|+......++..++...+ ..+.|..++.+..+..+ .|...|-.+...+-..
T Consensus 351 m~i~~~dle~s~~~fEkv~k--~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~-~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLK--QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP-VDSEAWLELAQLLEQT 427 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHH--hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHhc
Confidence 99999999999999999988 45888777788887776553 35778888888877653 3788888887777544
Q ss_pred CChhHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC---CCCCCH------hhHHHHHHHH
Q 012126 215 GDISIAYTLFNKMF----ERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNK---GFVPDT------LSYTTLLNSL 281 (470)
Q Consensus 215 g~~~~a~~~~~~m~----~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~ll~~~ 281 (470)
+...++.+|.... ..+-.+..+..|.+...+...|++++|...|...... ...++. .+--.+...+
T Consensus 428 -d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 428 -DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred -ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 4444477776543 4555678899999999999999999999999988755 122232 1222344555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHhchh--------------------------
Q 012126 282 CRKKKLREAYKLLCRMKVKGCNPD-IVHYNTVVLGFCREGRAIDACKVLEDMPS-------------------------- 334 (470)
Q Consensus 282 ~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~-------------------------- 334 (470)
-..++.+.|.+.|..+.+. .|. +..|-.+.......+...+|...++....
T Consensus 507 E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccc
Confidence 5566777777777777654 222 22233332222233444444444443322
Q ss_pred --------C-CCCCCHHHHHHHHHHHHh------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 012126 335 --------N-GCLPNLVSYRTLVGGLCD------------QGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVD 393 (470)
Q Consensus 335 --------~-~~~p~~~~~~~li~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 393 (470)
. ...+|..+...|...|.+ .+..++|+++|.++++.. +-|...-|.+...++..|+++
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~ 663 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFS 663 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCch
Confidence 1 111344444444443332 345688999999988864 557777788888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHccccCCce
Q 012126 394 EACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVEIKGDTR 447 (470)
Q Consensus 394 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 447 (470)
+|..+|.+..+... -...+|..+.++|...|++..|+++|+...+.-.+-+..
T Consensus 664 ~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~ 716 (1018)
T KOG2002|consen 664 EARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRS 716 (1018)
T ss_pred HHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 99999999988643 366789999999999999999999999998765544433
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=1.5e-14 Score=129.98 Aligned_cols=259 Identities=15% Similarity=0.120 Sum_probs=86.7
Q ss_pred HHHHHccCCchHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCC
Q 012126 102 ILKLGRAKYFSLIDDILITLKSEH-YPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRN 180 (470)
Q Consensus 102 l~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 180 (470)
...+.+.|++++|.++++...... .+.++..|..+...+...++++.|++.++++...+.. +...+..++.. . ..+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~-~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-L-QDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-c-ccc
Confidence 445555566666666664332222 1334444444555555566666666666666553321 22233333333 2 344
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 012126 181 YLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERG-VMPDVESYRILMQGLCRKSQVNRAVDLL 259 (470)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 259 (470)
+.++|.++++...+.. ++...+..++..+...++++++.++++.+.... ...+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4566666655544332 345556666666777777777777777665432 2345566666667777777777777777
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCC
Q 012126 260 EDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLP 339 (470)
Q Consensus 260 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 339 (470)
++..+..+. |......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+..|++..+.+ +.
T Consensus 170 ~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 170 RKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 777766433 45666667777777777777777766665542 3344556667777777777777777777766642 23
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 012126 340 NLVSYRTLVGGLCDQGMFDVAKKYMQLMI 368 (470)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 368 (470)
|......+..++...|+.++|..+..++.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 56666666777777777777777766554
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=4.4e-12 Score=112.49 Aligned_cols=200 Identities=11% Similarity=0.069 Sum_probs=143.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 012126 249 KSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKV 328 (470)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 328 (470)
+|++++|.+.|++.+.....-....||.= -.+-..|++++|++.|-.+... +..+..+...+...|-...+...|+++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 57788888888887765332222333322 2355678888888888766433 123566666777788888888888888
Q ss_pred HHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 012126 329 LEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEA 408 (470)
Q Consensus 329 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 408 (470)
+.+.... ++.|...+..|...|-+.|+-..|.+.+-+--+. ++-+..+..-|..-|....-++++..+|++..- +.
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 8776654 5557788888889999999988888877654443 566777888888888888889999999998754 67
Q ss_pred CCHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHccccCCceeeecccch
Q 012126 409 PHEDTWVMIVPQ-ICAGEEMEKLGEVLNEIVKVEIKGDTRIVEAGIGL 455 (470)
Q Consensus 409 p~~~~~~~l~~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~ 455 (470)
|+..-|..++.. +.+.|++.+|++++++..++ ...|..-+..++++
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri 703 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRI 703 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHH
Confidence 999999888754 55789999999999998653 44454444444443
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=2.7e-11 Score=103.09 Aligned_cols=223 Identities=18% Similarity=0.107 Sum_probs=100.8
Q ss_pred CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCC-CCCC--HHHHHHHHHHHHHcCCchh
Q 012126 72 QSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEH-YPVT--PSLFTYLIKIYAESNLPDR 148 (470)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~ 148 (470)
..+++.|.++|-.+.+.+ +.+.++...|.+.+.+.|..+.|+.++..+..+. .+.. ..+.-.|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 344556666666666543 3344555566666666677777777766665552 1111 1223335555666666666
Q ss_pred HHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHH
Q 012126 149 ALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNT----KSYNIMMRAFCFNGDISIAYTLF 224 (470)
Q Consensus 149 A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~ 224 (470)
|.++|..+.+.+. --......++..+ ....+|++|+++-+++.+.+..+.. ..|..|...+....+++.|..++
T Consensus 126 AE~~f~~L~de~e-fa~~AlqqLl~IY-Q~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 126 AEDIFNQLVDEGE-FAEGALQQLLNIY-QATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHhcchh-hhHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 6666666654321 1112222222222 2223355555555444444332211 12223333333334444444444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012126 225 NKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKV 299 (470)
Q Consensus 225 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 299 (470)
.+..+.+.+ .+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|...|+.++....+..+.+
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444443222 12222223334444444444444444444443333333344444444444444444444444443
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=6.9e-11 Score=106.04 Aligned_cols=361 Identities=11% Similarity=0.013 Sum_probs=251.5
Q ss_pred HhcCCChHHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCch
Q 012126 69 IASQSDPLLAKEIFDYASRQPNFRHS-NSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPD 147 (470)
Q Consensus 69 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 147 (470)
+-..+.+++|++.+.++.... |+ +.-|......|...|+|+++.+-.....+.. |.-..++..-..++-..|+++
T Consensus 125 ~f~~kkY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 125 FFRNKKYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhcccHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHHhhccHH
Confidence 345789999999999998653 55 7778888888999999999998888777664 334455555566666667776
Q ss_pred hHHH----------------------HHHH---------HHh--CCCccCHHHHHHHHHHHHhcC-------C-------
Q 012126 148 RALK----------------------TFRS---------MLE--FNCKPLPKQLNRILELLVTHR-------N------- 180 (470)
Q Consensus 148 ~A~~----------------------~~~~---------~~~--~~~~p~~~~~~~ll~~~~~~~-------~------- 180 (470)
+|+. +++. +.+ ..+.|+.....+.+..+.... +
T Consensus 201 eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l 280 (606)
T KOG0547|consen 201 EALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAAL 280 (606)
T ss_pred HHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhH
Confidence 6552 1111 110 123455555555555442110 0
Q ss_pred -------------ChhhHHHHHHHHHHC---CCCCC---------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 012126 181 -------------YLRPAFDLFKSAHKH---GVLPN---------TKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPD 235 (470)
Q Consensus 181 -------------~~~~a~~~~~~~~~~---~~~~~---------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 235 (470)
.+..+.+.+.+-... ....+ ..+...-...+.-.|+...|..-|+..+.....++
T Consensus 281 ~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~ 360 (606)
T KOG0547|consen 281 AEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN 360 (606)
T ss_pred HHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc
Confidence 122222222221110 00111 12222223334567888999999999998765543
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012126 236 VESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLG 315 (470)
Q Consensus 236 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 315 (470)
. .|--+..+|....+.++..+.|.+..+.+.. |..+|..=..++.-.+++++|..-|++..... +-+...|-.+.-+
T Consensus 361 ~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a 437 (606)
T KOG0547|consen 361 S-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCA 437 (606)
T ss_pred h-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHH
Confidence 3 3777788899999999999999999988765 66677777777777899999999999998763 2245666666667
Q ss_pred HHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCC--HHHHHHHHHHHHc
Q 012126 316 FCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKG-----FSPH--FSVSHALIKGFCN 388 (470)
Q Consensus 316 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~--~~~~~~li~~~~~ 388 (470)
..+.++++++...|++..+. ++-....|+...+.+...++++.|.+.|+..++.. +..+ +.+.-+++-.-.+
T Consensus 438 ~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk 516 (606)
T KOG0547|consen 438 LYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK 516 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh
Confidence 77889999999999998876 55567899999999999999999999999998742 1112 2222333333333
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 012126 389 VGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVK 439 (470)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 439 (470)
+++..|.+++.+..+.+.+ ....|..|...-.+.|+.++|+++|++...
T Consensus 517 -~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 517 -EDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred -hhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8999999999999886533 455889999999999999999999998754
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=5.3e-11 Score=106.08 Aligned_cols=309 Identities=12% Similarity=0.038 Sum_probs=231.0
Q ss_pred HHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCc--cCHHHHHHHHHHHHhcCCCh
Q 012126 105 LGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCK--PLPKQLNRILELLVTHRNYL 182 (470)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~ 182 (470)
+....+.+++..-.+.+...|++.+...-+....+.-...++++|+.+|+++.....- -|..+|..+|-.-- +
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~---~-- 311 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN---D-- 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh---h--
Confidence 3344556677777777788888888777777777777889999999999999885311 14445554443321 1
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012126 183 RPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDM 262 (470)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 262 (470)
...+..+.+-...--+--+.|...+.+-|.-.++.++|...|++..+.+.. ....|+.+..-|....+...|++-|+..
T Consensus 312 ~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 222333332221111234567888889999999999999999999998755 6788999999999999999999999999
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHH
Q 012126 263 LNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLV 342 (470)
Q Consensus 263 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 342 (470)
++-.+. |-..|-.|.++|.-.+...-|+-.|++..+.. +-|...|.+|..+|.+.++.++|++.|......| ..+..
T Consensus 391 vdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~ 467 (559)
T KOG1155|consen 391 VDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGS 467 (559)
T ss_pred HhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchH
Confidence 998765 89999999999999999999999999998863 4578999999999999999999999999998875 23568
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 012126 343 SYRTLVGGLCDQGMFDVAKKYMQLMISK----GFSPHFS--VSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVM 416 (470)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 416 (470)
.+..|...|.+.++.++|.+.+++.++. |...+.. .-.-|..-+.+.+++++|..........
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~----------- 536 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG----------- 536 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC-----------
Confidence 8999999999999999999999887762 3322211 1122445567778887776655444331
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHc
Q 012126 417 IVPQICAGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 417 l~~~~~~~g~~~~a~~~~~~m~~~ 440 (470)
....++|..+++++.+.
T Consensus 537 -------~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 537 -------ETECEEAKALLREIRKI 553 (559)
T ss_pred -------CchHHHHHHHHHHHHHh
Confidence 23346777777777653
No 45
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=2.6e-10 Score=100.16 Aligned_cols=294 Identities=15% Similarity=0.096 Sum_probs=225.7
Q ss_pred HHHHHHc--cCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhc
Q 012126 101 LILKLGR--AKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTH 178 (470)
Q Consensus 101 ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 178 (470)
+.+++.+ .|+|.+|+++..+-.+.+ +.....|..-+++.-..|+.+.+-.++.+.-+..-.++....-+.-.... .
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll-~ 165 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL-N 165 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH-h
Confidence 3344443 599999999999987776 44455566677777888999999999999887432333333333344444 6
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCC
Q 012126 179 RNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDV-------ESYRILMQGLCRKSQ 251 (470)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~ 251 (470)
.++++.|..-++++.+.+.. +........++|.+.|++.....++.++.+.|.--+. .+|..+++-....+.
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 67799999999999988754 7788999999999999999999999999998865443 456777776666666
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHh
Q 012126 252 VNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLED 331 (470)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 331 (470)
.+.-...|+..... .+-++..-.+++.-+.++|+.++|.++..+..+++..|+.. ..-.+.+-++...-++..+.
T Consensus 245 ~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 245 SEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred chHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHH
Confidence 67766677776543 34466677788889999999999999999999987766622 22345567777777766666
Q ss_pred chhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 012126 332 MPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKA 405 (470)
Q Consensus 332 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (470)
-.+. .+-+...+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+..+|.++.++.+..
T Consensus 320 ~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 320 WLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 5443 2334578888999999999999999999988774 789999999999999999999999999987644
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=2.1e-11 Score=113.57 Aligned_cols=287 Identities=14% Similarity=0.017 Sum_probs=201.0
Q ss_pred CchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCC--CccCHHHHHHHHHHHHhcCCChhhHHH
Q 012126 110 YFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFN--CKPLPKQLNRILELLVTHRNYLRPAFD 187 (470)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~~a~~ 187 (470)
+.++|...|..+..+ +..+..+...+..+|...+++++|.++|+.+.+.. ..-+...|.+.|-.+-. +-++.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~-----~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD-----EVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-----hHHHH
Confidence 456777778775444 34455666778888888888888888888887632 12245666666655531 22333
Q ss_pred HHHH-HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012126 188 LFKS-AHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKG 266 (470)
Q Consensus 188 ~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 266 (470)
.+.+ +.+.. +-.+.+|.++..+|.-.++.+.|++.|++.+..+.. ...+|+.+..-+.....+|.|...|+..+...
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 3332 22322 236788888888888888888888888888776433 67788888888888888888888888876553
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHH
Q 012126 267 FVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRT 346 (470)
Q Consensus 267 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 346 (470)
.. +-.+|-.+...|.+.++++.|+-.|+...+.+ +-+.+....+...+-+.|+.++|++++++......+ |...-..
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 32 33455556677888888888888888888764 335566667777788888888888888887775432 3334344
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 012126 347 LVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEA 408 (470)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 408 (470)
.+..+...++.++|+..++++++. ++-+..+|..+...|.+.|+.+.|+.-|--+.+.+.+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 566677788888888888888874 2334557777778888888888888888887775433
No 47
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.47 E-value=3.8e-09 Score=98.41 Aligned_cols=335 Identities=14% Similarity=0.049 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 012126 96 STYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELL 175 (470)
Q Consensus 96 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 175 (470)
.||..-...|.+.+.++-|..+|....+- +|.+..+|......--..|..++...+|.++... .|....+-.+...-
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake 593 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKE 593 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHH
Confidence 35555555566666666666666555544 2445555555555545555555555555555542 23333333333333
Q ss_pred HhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Q 012126 176 VTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRA 255 (470)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 255 (470)
.-..|+...|..++.+..+.... +...|-.-++.-....+++.|..+|.+.... .|+...|.--+..---.++.++|
T Consensus 594 ~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHH
Confidence 33345555555555555554432 4455555555555555566665555554432 33444444444444444555555
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhC
Q 012126 256 VDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSN 335 (470)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 335 (470)
++++++.++.-.. -...|-.+...+-+.++++.|.+.|..-.+. ++-....|-.+...--+.|..-.|..+++..+-.
T Consensus 671 ~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 671 LRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 5555555544111 2234444444555555555555555444333 1222333444444444444555555555554443
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----------------------------CCCCCHHHHHHHHHHH
Q 012126 336 GCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISK-----------------------------GFSPHFSVSHALIKGF 386 (470)
Q Consensus 336 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----------------------------~~~~~~~~~~~li~~~ 386 (470)
+ +-+...|...|+.-.+.|+.+.|..++.+.++. ....|+.+.-.+...|
T Consensus 749 N-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lf 827 (913)
T KOG0495|consen 749 N-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLF 827 (913)
T ss_pred C-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHH
Confidence 3 123444455555555555555554444433321 1244666777778888
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 012126 387 CNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 440 (470)
....++++|.+.|.+.++.+. .+..+|.-+...+.+.|.-+.-.++++.....
T Consensus 828 w~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 888899999999999988653 25578888888889999888888888888754
No 48
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.46 E-value=1.1e-08 Score=95.41 Aligned_cols=360 Identities=12% Similarity=0.041 Sum_probs=189.4
Q ss_pred HHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 012126 65 VQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESN 144 (470)
Q Consensus 65 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 144 (470)
+=+......+++.|.-++..+.+.. +.+.+.| .++++..-++.|..+++...+. +|.++.+|.+-...=-..|
T Consensus 382 LWKaAVelE~~~darilL~rAvecc--p~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ng 454 (913)
T KOG0495|consen 382 LWKAAVELEEPEDARILLERAVECC--PQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANG 454 (913)
T ss_pred HHHHHHhccChHHHHHHHHHHHHhc--cchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcC
Confidence 3344455555556666666655432 2233333 2345555566666666666554 4566666666555555666
Q ss_pred CchhHHHHHHHHH----hCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCC---------------------
Q 012126 145 LPDRALKTFRSML----EFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLP--------------------- 199 (470)
Q Consensus 145 ~~~~A~~~~~~~~----~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------------- 199 (470)
+.+...+++++-+ ..|+..+...|..=-..|-.. |..-.+..+....+..|++-
T Consensus 455 n~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a-gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~ 533 (913)
T KOG0495|consen 455 NVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA-GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIE 533 (913)
T ss_pred CHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc-CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHH
Confidence 6666665554422 244444444443333333222 22333333333333333321
Q ss_pred ---------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012126 200 ---------------NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLN 264 (470)
Q Consensus 200 ---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 264 (470)
+...|......=-..|..++...+|++....-.+ ....|-.....+-..|+...|..++....+
T Consensus 534 carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~ 612 (913)
T KOG0495|consen 534 CARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFE 612 (913)
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 3333433333333344455555555555444222 334444444445555666666666665555
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCC-HHH
Q 012126 265 KGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPN-LVS 343 (470)
Q Consensus 265 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~ 343 (470)
.... +...|-..+..-.....++.|..+|.+.... .|+...|.--+...--.+..++|.+++++..+. -|+ ...
T Consensus 613 ~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl 687 (913)
T KOG0495|consen 613 ANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKL 687 (913)
T ss_pred hCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHH
Confidence 5433 4555555555555566666666666655543 344455544444444455666666666655553 233 334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012126 344 YRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICA 423 (470)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 423 (470)
|..+.+.+.+.++.+.|...|..-.+. ++.....|-.+...--+.|.+-.|..+++...-++.+ +...|...|+.-.+
T Consensus 688 ~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR 765 (913)
T KOG0495|consen 688 WLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELR 765 (913)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHH
Confidence 555555566666666666655544332 2333445555555556666777777777776655433 66677777777777
Q ss_pred CCcHHHHHHHHHHHHHc
Q 012126 424 GEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 424 ~g~~~~a~~~~~~m~~~ 440 (470)
.|+.+.|..++.++++.
T Consensus 766 ~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 766 AGNKEQAELLMAKALQE 782 (913)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777666653
No 49
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=5.8e-10 Score=99.31 Aligned_cols=348 Identities=13% Similarity=0.069 Sum_probs=236.2
Q ss_pred HhcCCChHHHHHHHHHhhcCCCCCCCHH----HHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 012126 69 IASQSDPLLAKEIFDYASRQPNFRHSNS----TYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESN 144 (470)
Q Consensus 69 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 144 (470)
+.+.+++..|+.+++.++.+-. ..+-. ..+.+.-.+.+.|+++.|+..|+++.+.. |+-.+-..|+-++..-|
T Consensus 247 ~~kkr~fskaikfyrmaldqvp-sink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~ 323 (840)
T KOG2003|consen 247 HFKKREFSKAIKFYRMALDQVP-SINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIG 323 (840)
T ss_pred eeehhhHHHHHHHHHHHHhhcc-ccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecC
Confidence 3456678889999888765421 12222 34445556788999999999999988774 56555444555556678
Q ss_pred CchhHHHHHHHHHhCCCc------------cCHHHHHHHHHH-----HH-------------------------------
Q 012126 145 LPDRALKTFRSMLEFNCK------------PLPKQLNRILEL-----LV------------------------------- 176 (470)
Q Consensus 145 ~~~~A~~~~~~~~~~~~~------------p~~~~~~~ll~~-----~~------------------------------- 176 (470)
+.++..+.|.+|+..... |+....+..+.. +-
T Consensus 324 d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~d 403 (840)
T KOG2003|consen 324 DAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCD 403 (840)
T ss_pred cHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccH
Confidence 888888889888753222 233222222111 00
Q ss_pred --------------------------hcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH--------------------
Q 012126 177 --------------------------THRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRA-------------------- 210 (470)
Q Consensus 177 --------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-------------------- 210 (470)
-..|+++.|.+++.-+.+.+-+.-...-+.|-..
T Consensus 404 wcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~al 483 (840)
T KOG2003|consen 404 WCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIAL 483 (840)
T ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh
Confidence 0224455666666555443221111111111000
Q ss_pred ----------------HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhH
Q 012126 211 ----------------FCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSY 274 (470)
Q Consensus 211 ----------------~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 274 (470)
....|++++|.+.|++.....-.-....||+ .-.+-..|++++|++.|-++... +.-+..+.
T Consensus 484 n~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl 561 (840)
T KOG2003|consen 484 NIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVL 561 (840)
T ss_pred cccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHH
Confidence 0123667777777777766532222222332 23466789999999999887543 22367777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc
Q 012126 275 TTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQ 354 (470)
Q Consensus 275 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 354 (470)
..+.+.|-...+...|++++.+.... ++.|+.....|...|-+.|+-..|++.+-+-.+. ++-+..+..-|..-|...
T Consensus 562 ~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 562 VQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhh
Confidence 78889999999999999999887665 5667899999999999999999999887664443 455778888888888888
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCc
Q 012126 355 GMFDVAKKYMQLMISKGFSPHFSVSHALIKG-FCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEE 426 (470)
Q Consensus 355 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 426 (470)
.-+++++.+|++..- +.|+..-|..++.. +.+.|++.+|.++|+..-++ ++-|......|++.+...|-
T Consensus 640 qf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 640 QFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 889999999998755 68999999888855 56789999999999998665 66688999999998877663
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=1.1e-08 Score=91.92 Aligned_cols=358 Identities=13% Similarity=0.107 Sum_probs=215.8
Q ss_pred cCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHH
Q 012126 71 SQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRAL 150 (470)
Q Consensus 71 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 150 (470)
++++...|..+|+.++..+ ..+...|...+..-.+.+.+..|..+++..+..- |--...|-.-+.+=-..|++..|.
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHH
Confidence 4677888999999987554 3456677778888888888999999998887663 444556666666666778888888
Q ss_pred HHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 012126 151 KTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFER 230 (470)
Q Consensus 151 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 230 (470)
++|++-.+ ..|+...|++.+..=.+.. .++.|..++++..-- .|++.+|-...+.=.+.|+...|..+|...++.
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRyk-eieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYK-EIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhh-HHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 88888776 5688888888887665433 377788888777643 367777766666666666666666666554432
Q ss_pred -C------------------------------------------------------------------------------
Q 012126 231 -G------------------------------------------------------------------------------ 231 (470)
Q Consensus 231 -~------------------------------------------------------------------------------ 231 (470)
|
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 0
Q ss_pred -CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH--hhHHHHH----H-H---HHhcCCHHHHHHHHHHHHHc
Q 012126 232 -VMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDT--LSYTTLL----N-S---LCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 232 -~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll----~-~---~~~~~~~~~a~~~~~~m~~~ 300 (470)
-+.|-.+|-..+..-...|+.+...++|+..+.. ++|-. ..|..-| + + -....|.+.+.++++..++.
T Consensus 317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 0112233333333333334444444444444332 11110 0111100 0 0 01234444444444444442
Q ss_pred CCCCCHHHHHHHHHHH----HhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 012126 301 GCNPDIVHYNTVVLGF----CREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHF 376 (470)
Q Consensus 301 ~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 376 (470)
++-...||.-+--.| .++.+...|.+++.... |.-|-..+|...|..-.+.+++|.+.+++++.++-+ +-+.
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c 471 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENC 471 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhh
Confidence 222333333333222 24455555555555443 345666677777777777777888888887777754 3456
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcc
Q 012126 377 SVSHALIKGFCNVGKVDEACGVLEELLKAG-EAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVE 441 (470)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 441 (470)
.+|......-...|+.+.|..+|.-.+... .......|...|..-...|.++.|..+++.+++..
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 677777766677788888888887776542 12233456666666667788888888888877653
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=99.43 E-value=2.9e-10 Score=111.77 Aligned_cols=264 Identities=13% Similarity=0.009 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHh----cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH---------hcCChhHHHHHHHHHHHCC
Q 012126 165 PKQLNRILELLVT----HRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFC---------FNGDISIAYTLFNKMFERG 231 (470)
Q Consensus 165 ~~~~~~ll~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~a~~~~~~m~~~~ 231 (470)
...|...+..... ..+.+++|...|++..+.... +...|..+..++. ..+++++|...+++..+.+
T Consensus 256 ~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld 334 (553)
T PRK12370 256 IDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD 334 (553)
T ss_pred hHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC
Confidence 3444444444321 233467899999999876533 4556666555443 2345789999999998876
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHH
Q 012126 232 VMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDI-VHYN 310 (470)
Q Consensus 232 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~ 310 (470)
.. +...+..+...+...|++++|+..|++..+.++. +...+..+..++...|++++|...+++..+. .|+. ..+.
T Consensus 335 P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~ 410 (553)
T PRK12370 335 HN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGI 410 (553)
T ss_pred CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHH
Confidence 54 7788888888888999999999999999887644 5667888888899999999999999999887 3442 2333
Q ss_pred HHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcc
Q 012126 311 TVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPH-FSVSHALIKGFCNV 389 (470)
Q Consensus 311 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~ 389 (470)
.++..+...|++++|...++++.+...+-+...+..+..++...|+.++|...+.++... .|+ ....+.+...|...
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhcc
Confidence 444456678899999999998876532223445666777888999999999999887654 333 34455566667777
Q ss_pred CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 012126 390 GKVDEACGVLEELLKA-GEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 390 g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 440 (470)
| ++|...++.+.+. +..+....+ +-..|.-.|+-+.+... +++.+.
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 7 4788877776553 112222233 33334555665555555 777654
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=2.3e-10 Score=99.92 Aligned_cols=198 Identities=16% Similarity=0.087 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012126 238 SYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFC 317 (470)
Q Consensus 238 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 317 (470)
.+..+...+...|++++|.+.+++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 3334444444444444444444444433211 23344444444445555555555555444432 123334444445555
Q ss_pred hcCCHhHHHHHHHhchhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 012126 318 REGRAIDACKVLEDMPSNGCL-PNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEAC 396 (470)
Q Consensus 318 ~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 396 (470)
..|++++|...+++..+.... .....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555555442111 123344445556666666666666666666542 223445566666666677777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 012126 397 GVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVK 439 (470)
Q Consensus 397 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 439 (470)
..+++..+. ...+...+..++..+...|+.++|..+.+.+.+
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777766654 233455555666666666777777766666543
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=3.8e-10 Score=98.55 Aligned_cols=201 Identities=16% Similarity=0.081 Sum_probs=158.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLN 279 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 279 (470)
....+..+...+...|++++|.+.+++..+.... +...+..+...+...|++++|.+.+++..+.... +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 4566777888888999999999999988776432 5677788888888999999999999988876544 5567777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChH
Q 012126 280 SLCRKKKLREAYKLLCRMKVKGC-NPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFD 358 (470)
Q Consensus 280 ~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 358 (470)
.+...|++++|...+++...... ......+..+...+...|++++|...+.+..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 88889999999999998876422 2234566677888889999999999999887753 234567778888889999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 012126 359 VAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 359 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (470)
+|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999988876 344566777778888889999999988887755
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.39 E-value=2.6e-10 Score=112.18 Aligned_cols=267 Identities=13% Similarity=0.082 Sum_probs=190.5
Q ss_pred CCHHHHHHHHHHHH-----ccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc---------CCchhHHHHHHHHHh
Q 012126 93 HSNSTYLILILKLG-----RAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAES---------NLPDRALKTFRSMLE 158 (470)
Q Consensus 93 ~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~ 158 (470)
.+...|...+.+.. ..+++++|...+++..+.. |.+...|..+..+|... +++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45565555555432 1256899999999998876 55677777777665432 347899999999988
Q ss_pred CCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 012126 159 FNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVES 238 (470)
Q Consensus 159 ~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 238 (470)
. .|+.......+..+....|++++|...|++..+.++. +...+..+...+...|++++|...+++..+.++. +...
T Consensus 333 l--dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 333 L--DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred c--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 4 5766666666666666778899999999999987643 6778888999999999999999999999988654 3333
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 012126 239 YRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPD-IVHYNTVVLGFC 317 (470)
Q Consensus 239 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~ 317 (470)
+..++..+...|++++|+..++++......-+...+..+..++...|+.++|...+.++... .|+ ....+.+...|+
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 44455567778999999999999887643324556777888899999999999999998665 333 344555666677
Q ss_pred hcCCHhHHHHHHHhchhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 012126 318 REGRAIDACKVLEDMPSNG-CLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKG 371 (470)
Q Consensus 318 ~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 371 (470)
..| ++|...++.+.+.. ..+....+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 47777777765531 12222223 33344556776766665 7777654
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=2.8e-10 Score=97.11 Aligned_cols=231 Identities=13% Similarity=0.055 Sum_probs=190.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 012126 204 YNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCR 283 (470)
Q Consensus 204 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 283 (470)
-+-+.++|.+.|.+.+|.+-|+.-.+. .|-..||..|-+.|.+..++..|+.++.+-++.- +-|+....-+.+.+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 367889999999999999999988776 4567788889999999999999999999887752 2244444566778888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 012126 284 KKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKY 363 (470)
Q Consensus 284 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 363 (470)
.++.++|.++++...+.. +.++.....+...|.-.++++-|+..|+.+.+.|+. +...|+.+.-+|.-.+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999988763 446666777777888899999999999999999875 677888888888889999999999
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 012126 364 MQLMISKGFSPH--FSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 364 ~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 440 (470)
|++....--.|+ ..+|..+....+..|++..|.+.|+-.+..+.. +...++.|.-.-.+.|++++|..+++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 998887533343 457777888888899999999999998876543 6778999888888999999999999998754
No 56
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.35 E-value=3.9e-09 Score=100.54 Aligned_cols=294 Identities=13% Similarity=0.096 Sum_probs=209.2
Q ss_pred HHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc--
Q 012126 66 QKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAES-- 143 (470)
Q Consensus 66 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 143 (470)
..++...|+++.|++.++..... +......+......+.+.|++++|..++..++..+ |.+..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 36778899999999999876433 23445667777889999999999999999999987 55555556666665332
Q ss_pred ---CCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 012126 144 ---NLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIA 220 (470)
Q Consensus 144 ---g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 220 (470)
.+.+...++|+++...- |.......+.-.+......-..+...+..+...|++ .+|+.|-..|......+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 24677788888887643 443333333222221111224566667777788865 4677777777766666666
Q ss_pred HHHHHHHHHC----C----------CCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 012126 221 YTLFNKMFER----G----------VMPDVE--SYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRK 284 (470)
Q Consensus 221 ~~~~~~m~~~----~----------~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 284 (470)
.+++...... + -.|+.. ++..+...|...|++++|+++.++.++..+. .+..|..-...+-..
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHC
Confidence 6666665432 1 123442 4456678888999999999999999988543 467888888999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHH------HH--HHHHHHHHhcCC
Q 012126 285 KKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLV------SY--RTLVGGLCDQGM 356 (470)
Q Consensus 285 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------~~--~~li~~~~~~g~ 356 (470)
|++++|.+.++...... .-|...-+-.+..+.++|++++|.+++......+..|... .| .....+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998774 2366677777888999999999999999988776544221 22 344578889999
Q ss_pred hHHHHHHHHHHHH
Q 012126 357 FDVAKKYMQLMIS 369 (470)
Q Consensus 357 ~~~a~~~~~~~~~ 369 (470)
+..|++.|..+.+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877765
No 57
>PF13041 PPR_2: PPR repeat family
Probab=99.35 E-value=2.5e-12 Score=81.40 Aligned_cols=49 Identities=39% Similarity=0.903 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 012126 304 PDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLC 352 (470)
Q Consensus 304 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 352 (470)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444555555555555555555555555555555555555555555443
No 58
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.34 E-value=8.4e-09 Score=98.32 Aligned_cols=306 Identities=12% Similarity=0.082 Sum_probs=144.6
Q ss_pred HHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhc---
Q 012126 102 ILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTH--- 178 (470)
Q Consensus 102 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~--- 178 (470)
...+...|++++|.+.+..-... +.............+.+.|+.++|..+|..+++.+ |+...|...+..+...
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34456677777777777654433 33344555666777777777777777777777754 6666665555554411
Q ss_pred --CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Q 012126 179 --RNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDI-SIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRA 255 (470)
Q Consensus 179 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 255 (470)
....+....+|+++...- |.......+.-.+....++ ..+..++..+..+|++ .+|+.+-..|......+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 112444455555554432 2222222221111111122 1223334444444443 2333333333333333333
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHhch
Q 012126 256 VDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDI--VHYNTVVLGFCREGRAIDACKVLEDMP 333 (470)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~ 333 (470)
.+++.......-. .+.+.... ....-+|+. +++..+.+.|-..|++++|++++++..
T Consensus 163 ~~l~~~~~~~l~~---------------~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI 221 (517)
T PF12569_consen 163 ESLVEEYVNSLES---------------NGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI 221 (517)
T ss_pred HHHHHHHHHhhcc---------------cCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3333332211000 00000000 000012222 233444555666666666666666665
Q ss_pred hCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 012126 334 SNGCLPN-LVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHED 412 (470)
Q Consensus 334 ~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 412 (470)
+. .|+ +..|..-...+-+.|++.+|...++...+.+ .-|..+-+-.+..+.++|++++|.+++..+.+.+..|...
T Consensus 222 ~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~ 298 (517)
T PF12569_consen 222 EH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSN 298 (517)
T ss_pred hc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccC
Confidence 54 243 4455555556666666666666666666543 2344444455555566666666666666665544322211
Q ss_pred ------HH--HHHHHHHHcCCcHHHHHHHHHHHHH
Q 012126 413 ------TW--VMIVPQICAGEEMEKLGEVLNEIVK 439 (470)
Q Consensus 413 ------~~--~~l~~~~~~~g~~~~a~~~~~~m~~ 439 (470)
.| .-...+|.+.|++..|++.|..+.+
T Consensus 299 L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 299 LNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22 2234456666666666655555543
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.34 E-value=3.3e-12 Score=80.87 Aligned_cols=49 Identities=39% Similarity=0.863 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012126 199 PNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLC 247 (470)
Q Consensus 199 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 247 (470)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666665
No 60
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=9.6e-08 Score=86.02 Aligned_cols=354 Identities=15% Similarity=0.117 Sum_probs=254.3
Q ss_pred cCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHH
Q 012126 71 SQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRAL 150 (470)
Q Consensus 71 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 150 (470)
..||...|.++|+.-.. ..|+...|.+.|..-.+-+.++.|..+++...-.+ |+...|..-...=-++|++..|.
T Consensus 153 ~LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H--P~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH--PKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HhcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec--ccHHHHHHHHHHHHhcCcHHHHH
Confidence 36888889998885432 36888999999999999999999999999987654 78888888888888889999999
Q ss_pred HHHHHHHhCCCccCHHHHHHHHHHHHh---cCCChhh----------------HHHHH----------------------
Q 012126 151 KTFRSMLEFNCKPLPKQLNRILELLVT---HRNYLRP----------------AFDLF---------------------- 189 (470)
Q Consensus 151 ~~~~~~~~~~~~p~~~~~~~ll~~~~~---~~~~~~~----------------a~~~~---------------------- 189 (470)
.+|+..++. ..|...-..++.+++. ....++. +..+|
T Consensus 228 ~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 228 SVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 988887652 1112111122222111 1111111 12222
Q ss_pred ------HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---HHcCChH
Q 012126 190 ------KSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDV-------ESYRILMQGL---CRKSQVN 253 (470)
Q Consensus 190 ------~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~---~~~~~~~ 253 (470)
+.+.+.+ +-|-.+|--.++.-...|+.+...++|++.+.. ++|-. ..|..+=.++ ....|.+
T Consensus 306 KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 306 KRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 2222222 236777888888888889999999999999875 44421 1222222222 3468899
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 012126 254 RAVDLLEDMLNKGFVPDTLSYTTLLNSLC----RKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVL 329 (470)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 329 (470)
.+.++|+.+++. ++-..+||.-+=-+|+ ++.++..|.+++...+.. -|-..+|...|..-.+.+.++.+..++
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999884 3335566665544444 678999999999988754 788899999999999999999999999
Q ss_pred HhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 012126 330 EDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKG-FSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEA 408 (470)
Q Consensus 330 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 408 (470)
++..+.+ +-|..+|......-...|+.+.|..+|+-.++.. +......|-+.|+--...|.++.|..+++.+++..
T Consensus 461 Ekfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt-- 537 (677)
T KOG1915|consen 461 EKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT-- 537 (677)
T ss_pred HHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--
Confidence 9999975 3367888888887888999999999999998753 33445678888888889999999999999998854
Q ss_pred CCHHHHHHHHHHHH-----cCC-----------cHHHHHHHHHHHHH
Q 012126 409 PHEDTWVMIVPQIC-----AGE-----------EMEKLGEVLNEIVK 439 (470)
Q Consensus 409 p~~~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~m~~ 439 (470)
+...+|.+....-. +.| ....|..+|+.+..
T Consensus 538 ~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 538 QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 45667777765433 334 55678888877754
No 61
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.31 E-value=2.3e-10 Score=109.76 Aligned_cols=91 Identities=14% Similarity=0.129 Sum_probs=67.2
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHC
Q 012126 116 DILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKH 195 (470)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 195 (470)
.++..+...|+.|+..+|..+|..|+..|+.+.|- +|.-|...........++.++.... ..++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~-~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHK-EANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccc-ccccccCCC---------
Confidence 45666777888888888999999999889888887 8888877666666666776666543 334344333
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhH
Q 012126 196 GVLPNTKSYNIMMRAFCFNGDISI 219 (470)
Q Consensus 196 ~~~~~~~~~~~li~~~~~~g~~~~ 219 (470)
.|...+|..|..+|...||+..
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH
Confidence 4778888888888888888765
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.29 E-value=1.5e-09 Score=102.10 Aligned_cols=238 Identities=18% Similarity=0.162 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CC-CCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHhC-----CCC
Q 012126 201 TKSYNIMMRAFCFNGDISIAYTLFNKMFER-----GV-MPDVES-YRILMQGLCRKSQVNRAVDLLEDMLNK-----GFV 268 (470)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~ 268 (470)
..+...+...|...|+++.|..+++...+. |. .|...+ .+.+...|...+++++|..+|+++... |-.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666899999999999999999887654 21 223333 334667888999999999999998753 322
Q ss_pred -C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHHHhcCCHhHHHHHHHhchhC---C
Q 012126 269 -P-DTLSYTTLLNSLCRKKKLREAYKLLCRMKVK-----GC-NPDI-VHYNTVVLGFCREGRAIDACKVLEDMPSN---G 336 (470)
Q Consensus 269 -~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~ 336 (470)
| -..+++.|..+|.+.|++++|...+++..+. |. .|.+ ..++.+...++..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2 2356777888999999999998888776432 11 1222 23666777889999999999998875442 1
Q ss_pred CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC--CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHH-
Q 012126 337 CLP----NLVSYRTLVGGLCDQGMFDVAKKYMQLMISK----GF--SP-HFSVSHALIKGFCNVGKVDEACGVLEELLK- 404 (470)
Q Consensus 337 ~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~- 404 (470)
..+ -..+++.|...|...|++++|.+++++++.. +. .+ ....++.+...|.+.+.+++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 122 2468999999999999999999999998763 11 11 245678888999999999999999987642
Q ss_pred ---CCCC-CC-HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 012126 405 ---AGEA-PH-EDTWVMIVPQICAGEEMEKLGEVLNEIV 438 (470)
Q Consensus 405 ---~~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 438 (470)
.|.. |+ ..+|..|...|...|+++.|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2321 23 3588999999999999999999998876
No 63
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.7e-08 Score=92.79 Aligned_cols=211 Identities=13% Similarity=0.022 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC--CCCCCHhhHHHH
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNK--GFVPDTLSYTTL 277 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l 277 (470)
...+|-++.--|...|+..+|.+.|.+....+.. =...|-.+...|+-.|..++|+..|...-+. |.. -+..| +
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--l 386 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--L 386 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--H
Confidence 3444444444444445555555555443332211 1233444444444455555555544443321 110 01111 1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhC----C-CC-CCHHHHHHHHHHH
Q 012126 278 LNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSN----G-CL-PNLVSYRTLVGGL 351 (470)
Q Consensus 278 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~-p~~~~~~~li~~~ 351 (470)
.--|.+.++.+.|.+.|.+.... .+-|+...+-+.-.....+.+.+|..+|+..... + -. -...+++.|..+|
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 22234444555555555544433 1223444444444444444555555555443311 0 00 1223344444455
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012126 352 CDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIV 418 (470)
Q Consensus 352 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 418 (470)
.+.+.+++|+..+++.+... +.+..++.++.-.|...|+++.|.+.|.+.+. +.|+..+-..++
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL 529 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELL 529 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHH
Confidence 55555555555555544431 33444455555455555555555555554443 334444443333
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=2.8e-09 Score=91.16 Aligned_cols=233 Identities=12% Similarity=0.053 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 012126 166 KQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESY-RILMQ 244 (470)
Q Consensus 166 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~ 244 (470)
.-|..-+..|+-..|.+.+|.+.|+..++.- |-+.||..|-+.|.+..+...|+.+|.+-.+. .|-.+|| ..+.+
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQAR 298 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHH
Confidence 3466677788878888999999999888753 67789999999999999999999999998876 3444554 55778
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhH
Q 012126 245 GLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAID 324 (470)
Q Consensus 245 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 324 (470)
.+...++.++|.++|+...+.... ++.....+...|.-.++.+.|...++++...|+. +...|+.+.-+|.-.+++|-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 888899999999999999887543 6666666777777889999999999999999865 78889999999999999999
Q ss_pred HHHHHHhchhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 012126 325 ACKVLEDMPSNGCLPN--LVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEEL 402 (470)
Q Consensus 325 a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 402 (470)
++.-|......--.|+ ...|..+-......|++..|.+.|+-.+..+ ..+...+|.|.-.-.+.|++++|..++...
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9999888766533343 3467777777888999999999999988764 345678888888888999999999999988
Q ss_pred HHC
Q 012126 403 LKA 405 (470)
Q Consensus 403 ~~~ 405 (470)
...
T Consensus 456 ~s~ 458 (478)
T KOG1129|consen 456 KSV 458 (478)
T ss_pred hhh
Confidence 764
No 65
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.27 E-value=3.6e-10 Score=108.40 Aligned_cols=254 Identities=13% Similarity=0.105 Sum_probs=155.1
Q ss_pred HHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 012126 151 KTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFER 230 (470)
Q Consensus 151 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 230 (470)
.++-.+...|+.|+..+|..++..|+ ..|+.+.|- +|.-|.-.....+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc-~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYC-TKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHc-ccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 34556667788888888888888777 555577666 7777776666667777888888777777777665
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHH----hCCCCCCHhhHHH--------------HHHHHHhcCCHHH
Q 012126 231 GVMPDVESYRILMQGLCRKSQVNR---AVDLLEDML----NKGFVPDTLSYTT--------------LLNSLCRKKKLRE 289 (470)
Q Consensus 231 ~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~~~~--------------ll~~~~~~~~~~~ 289 (470)
.|...||..|..+|...||... +.+.++... ..|+.....-+-. .+....-.|-++.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 5677888888888888888544 333222221 1222211111111 1111222233334
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 012126 290 AYKLLCRMKVKGCNPDIVHYNTVVLGFCREG-RAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMI 368 (470)
Q Consensus 290 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 368 (470)
+.+++..+......-. +..+++-+.... .+++-..+.+...+ .|+..+|..++.+-...|+.+.|..++.+|.
T Consensus 158 llkll~~~Pvsa~~~p---~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAP---FQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHhhCCcccccch---HHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 4443333322111100 001122222222 23333333333333 4788888888888888888888888888888
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCc
Q 012126 369 SKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEE 426 (470)
Q Consensus 369 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 426 (470)
+.|++.+...|..|+-+ .++..-+..+++.|.+.|+.|+..|+...+..+.+.|.
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 88888887777777755 67777778888888888888888888877777777554
No 66
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.25 E-value=1.3e-07 Score=88.37 Aligned_cols=306 Identities=11% Similarity=-0.001 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHhCC-CccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 012126 130 PSLFTYLIKIYAESNLPDRALKTFRSMLEFN-CKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMM 208 (470)
Q Consensus 130 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 208 (470)
...|..+...+...|+.+.+.+.+....... ..++......+........|++++|.+++++..+..+. |...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-h
Confidence 4445555666666666666655555544321 12233333333344444566677777777777665322 3333332 2
Q ss_pred HHHHh----cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 012126 209 RAFCF----NGDISIAYTLFNKMFERGVMP-DVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCR 283 (470)
Q Consensus 209 ~~~~~----~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 283 (470)
..+.. .+..+.+.+.+... ....| .......+...+...|++++|.+.+++..+.... +...+..+..++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHH
Confidence 22222 34444444444431 11222 2334445556777788888888888888776543 45667777778888
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCCHhHHHHHHHhchhCCC-CCCHHHH-H--HHHHHHHhcCC
Q 012126 284 KKKLREAYKLLCRMKVKGC-NPDI--VHYNTVVLGFCREGRAIDACKVLEDMPSNGC-LPNLVSY-R--TLVGGLCDQGM 356 (470)
Q Consensus 284 ~~~~~~a~~~~~~m~~~~~-~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~ 356 (470)
.|++++|...+++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 8888888888887766421 1222 2345677778888888888888888654321 1111111 1 22333333443
Q ss_pred hHHHHHH--H-HHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC------C--CHHHHHHHHHHHHcC
Q 012126 357 FDVAKKY--M-QLMISKG-FSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEA------P--HEDTWVMIVPQICAG 424 (470)
Q Consensus 357 ~~~a~~~--~-~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------p--~~~~~~~l~~~~~~~ 424 (470)
.+.+..+ + ....... .............++...|+.++|..+++.+...... . ..........++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3333332 1 1111110 0111122235666778889999999999887653211 0 111222223345688
Q ss_pred CcHHHHHHHHHHHHHc
Q 012126 425 EEMEKLGEVLNEIVKV 440 (470)
Q Consensus 425 g~~~~a~~~~~~m~~~ 440 (470)
|++++|.+.+.+.+..
T Consensus 321 g~~~~A~~~L~~al~~ 336 (355)
T cd05804 321 GNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999888764
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=3.8e-08 Score=85.29 Aligned_cols=362 Identities=12% Similarity=0.052 Sum_probs=205.8
Q ss_pred HHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCc
Q 012126 67 KLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLP 146 (470)
Q Consensus 67 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 146 (470)
+-+.+.+|+..|..+++.....+. .....+-..+...+.+.|++++|...+..+.... .++...+..|.-.+.-.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 445677889999999887764332 1122333445556678899999999998887765 55666777777777777888
Q ss_pred hhHHHHHHHHHhCCCccCHHHHHHHHHHHHh------------------------------cCCChhhHHHHHHHHHHCC
Q 012126 147 DRALKTFRSMLEFNCKPLPKQLNRILELLVT------------------------------HRNYLRPAFDLFKSAHKHG 196 (470)
Q Consensus 147 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~------------------------------~~~~~~~a~~~~~~~~~~~ 196 (470)
.+|..+-....+ ......++-.++. .+-.+++|++++..+...+
T Consensus 108 ~eA~~~~~ka~k------~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 108 IEAKSIAEKAPK------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHHHHHhhCCC------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 887776554322 1111111111111 1123678888888887654
Q ss_pred CCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH-------------
Q 012126 197 VLPNTKSYNIMM-RAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDM------------- 262 (470)
Q Consensus 197 ~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~------------- 262 (470)
|+-...|.-+ -+|.+..-++-+.++++-.... ++-+....|.......+.=+-..|.+-..++
T Consensus 182 --~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~ 258 (557)
T KOG3785|consen 182 --PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEY 258 (557)
T ss_pred --hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHH
Confidence 4555555443 4556777777777777776654 2224444444433333321111111111111
Q ss_pred -HhCCC------------CCC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--------------
Q 012126 263 -LNKGF------------VPD-----TLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYN-------------- 310 (470)
Q Consensus 263 -~~~~~------------~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-------------- 310 (470)
.++++ .|. +.+-..|+-.|.+.+++++|..+.+.+.-. .|-.....
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSr 336 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSR 336 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcH
Confidence 11110 011 112233455577788888888777665421 12111111
Q ss_pred ---------------------------HHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 012126 311 ---------------------------TVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKY 363 (470)
Q Consensus 311 ---------------------------~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 363 (470)
.+..++.-..++++++..++.+...-..-|...|| +.++++..|++.+|+++
T Consensus 337 eHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEel 415 (557)
T KOG3785|consen 337 EHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEEL 415 (557)
T ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHH
Confidence 11222222234444554444444432223444444 67888889999999999
Q ss_pred HHHHHHCCCCCCHHHHH-HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHcCCcHHHHHHHHHHHHHcc
Q 012126 364 MQLMISKGFSPHFSVSH-ALIKGFCNVGKVDEACGVLEELLKAGEAPHEDT-WVMIVPQICAGEEMEKLGEVLNEIVKVE 441 (470)
Q Consensus 364 ~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 441 (470)
|-.+....++ |..+|. .|.++|.+++.++.|++++-++.. .-+..+ ...+..-|.+.+.+=-|-+.|+++...+
T Consensus 416 f~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 416 FIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred HhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 9777654444 344554 556889999999999887755533 122223 3344566788898888889999888665
Q ss_pred ccCCc
Q 012126 442 IKGDT 446 (470)
Q Consensus 442 ~~p~~ 446 (470)
..|..
T Consensus 492 P~pEn 496 (557)
T KOG3785|consen 492 PTPEN 496 (557)
T ss_pred CCccc
Confidence 55543
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2.7e-07 Score=81.77 Aligned_cols=297 Identities=14% Similarity=0.067 Sum_probs=202.7
Q ss_pred HHHHHHHH--cCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012126 135 YLIKIYAE--SNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFC 212 (470)
Q Consensus 135 ~li~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 212 (470)
.-+.+++. .++...|...+-.+.....-|+....-.-+..+....|+.++|...|++....++. +........-.+.
T Consensus 199 ~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~ 277 (564)
T KOG1174|consen 199 KWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLG 277 (564)
T ss_pred HHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHH
Confidence 34444443 34555566666555555556666666555555555777788888888888765421 2222222333445
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 012126 213 FNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYK 292 (470)
Q Consensus 213 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 292 (470)
..|+++....+...+.... .-+...|..-+......++++.|+.+-++.++.+.. +...+-.-...+...++.++|.-
T Consensus 278 ~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 278 QEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred hccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHH
Confidence 6788887777777765542 113344444445555678888899888888876543 45555555567778899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHH-HHHH-hcCChHHHHHHHHHHHHC
Q 012126 293 LLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLV-GGLC-DQGMFDVAKKYMQLMISK 370 (470)
Q Consensus 293 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~-~~g~~~~a~~~~~~~~~~ 370 (470)
.|+...... +-+...|..|+..|...|++.+|.-+-++..+. +..+..+...+. ..|. ....-++|.+++++..+.
T Consensus 356 aFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~ 433 (564)
T KOG1174|consen 356 AFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI 433 (564)
T ss_pred HHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc
Confidence 999887652 346789999999999999999988777665443 233555555442 2232 223347888888887764
Q ss_pred CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 012126 371 GFSPH-FSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 371 ~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 440 (470)
.|+ ....+.+...+...|..+++..+++..+. ..||....+.|.+.+...+.+.+|++.|...+..
T Consensus 434 --~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 434 --NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred --CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 444 34667778888999999999999999877 4589999999999999999999999998888743
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.24 E-value=2e-07 Score=87.24 Aligned_cols=97 Identities=21% Similarity=0.274 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012126 343 SYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPH-FSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQI 421 (470)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 421 (470)
++..+++.+-..|+++.|..+++..+++ .|+ ...|..=.+.+...|++++|..++++..+.+. +|...-..-+.-.
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYm 449 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHH
Confidence 3445667778888999999988888775 444 23455555778888999999999988877642 3544444556666
Q ss_pred HcCCcHHHHHHHHHHHHHccc
Q 012126 422 CAGEEMEKLGEVLNEIVKVEI 442 (470)
Q Consensus 422 ~~~g~~~~a~~~~~~m~~~~~ 442 (470)
.++++.++|.++....-+.|.
T Consensus 450 LrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHccccHHHHHHHHHhhhccc
Confidence 788888888888888877765
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=6.7e-08 Score=87.32 Aligned_cols=349 Identities=12% Similarity=0.047 Sum_probs=221.9
Q ss_pred HHHHHHccCCchHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHh--
Q 012126 101 LILKLGRAKYFSLIDDILITLKSEHYPVT-PSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVT-- 177 (470)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~-- 177 (470)
....|.+.|.+++|++.+.+.++.. |+ +..|.....+|...|++++..+.-.+.++. .|+- ...+++....
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y--~KAl~RRA~A~E 194 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDY--VKALLRRASAHE 194 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHH--HHHHHHHHHHHH
Confidence 3456889999999999999999875 55 777888999999999999988877777663 3432 1111111110
Q ss_pred cCCChh----------------------hHHHHHHH--------HHH-CC--CCCCHHHHHHHHHHHHh-----------
Q 012126 178 HRNYLR----------------------PAFDLFKS--------AHK-HG--VLPNTKSYNIMMRAFCF----------- 213 (470)
Q Consensus 178 ~~~~~~----------------------~a~~~~~~--------~~~-~~--~~~~~~~~~~li~~~~~----------- 213 (470)
..|.++ -+.+++.. -.+ .+ +-|+....++....+-.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 011111 12222221 111 11 22343333333322210
Q ss_pred --------------cC---ChhHHHHHHHHHHHC---CCCCC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012126 214 --------------NG---DISIAYTLFNKMFER---GVMPD---------VESYRILMQGLCRKSQVNRAVDLLEDMLN 264 (470)
Q Consensus 214 --------------~g---~~~~a~~~~~~m~~~---~~~p~---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 264 (470)
.+ .+..|...+.+-... ....+ ..+...-...+.-.|+.-.|.+-|+..+.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 01 222333322221111 01111 22222223344557889999999999988
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHH
Q 012126 265 KGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSY 344 (470)
Q Consensus 265 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 344 (470)
....++. .|--+..+|....+.++....|....+.+ +-++.+|..-.+.+.-.+++++|..=|++..... +-+...|
T Consensus 355 l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~ 431 (606)
T KOG0547|consen 355 LDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAY 431 (606)
T ss_pred cCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHH
Confidence 7655333 36666778999999999999999998874 3367778888888888899999999999988753 1245566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-----CCCCHHHH--HHH
Q 012126 345 RTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAG-----EAPHEDTW--VMI 417 (470)
Q Consensus 345 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~p~~~~~--~~l 417 (470)
..+..+..+.+.+++++..|++.+++ ++.-+.+|+.....+...++++.|.+.|+..++.. +..+...+ ..+
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~ 510 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKAL 510 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhH
Confidence 66777777899999999999999886 66678899999999999999999999999987642 11122222 222
Q ss_pred HHHHHcCCcHHHHHHHHHHHHHccccCCceeeecccchhhHhhHH
Q 012126 418 VPQICAGEEMEKLGEVLNEIVKVEIKGDTRIVEAGIGLEDYLIGK 462 (470)
Q Consensus 418 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~ 462 (470)
+..- =.+++..|.+++++..+. .|.-......++-.....|+
T Consensus 511 l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 511 LVLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGK 552 (606)
T ss_pred hhhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhh
Confidence 2222 238999999999999854 45444444444444444443
No 71
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.21 E-value=7.2e-07 Score=83.50 Aligned_cols=363 Identities=10% Similarity=0.103 Sum_probs=213.2
Q ss_pred HHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCc
Q 012126 67 KLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLP 146 (470)
Q Consensus 67 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 146 (470)
..+-.+++.......|+.++..-.+......|...+......+-.+-+..++++..+- ++..-+--|..+++.++.
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~ 185 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRL 185 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccch
Confidence 4556788888888888888765444445567888888788888888889999888764 445567778888899999
Q ss_pred hhHHHHHHHHHhCC------CccCHHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCC
Q 012126 147 DRALKTFRSMLEFN------CKPLPKQLNRILELLVTHRNY--LRPAFDLFKSAHKHGVLPN--TKSYNIMMRAFCFNGD 216 (470)
Q Consensus 147 ~~A~~~~~~~~~~~------~~p~~~~~~~ll~~~~~~~~~--~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~ 216 (470)
++|.+.+...+... .+.+...|+.+-..+.++.+. --.+..+++.+... -+| -..|+.|.+-|.+.|.
T Consensus 186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~ 263 (835)
T KOG2047|consen 186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGL 263 (835)
T ss_pred HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhh
Confidence 99999888776421 123334455555555443321 11233444444322 234 3467888999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH------------------------------------------------
Q 012126 217 ISIAYTLFNKMFERGVMPDVESYRILMQGLCR------------------------------------------------ 248 (470)
Q Consensus 217 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~------------------------------------------------ 248 (470)
+++|.++|++....-. ++.-|..+..+|+.
T Consensus 264 ~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 264 FEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 9999998887654311 11122222222211
Q ss_pred ------------------cCChHHHHHHHHHHHhCCCCC------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 012126 249 ------------------KSQVNRAVDLLEDMLNKGFVP------DTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNP 304 (470)
Q Consensus 249 ------------------~~~~~~a~~~~~~~~~~~~~~------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 304 (470)
.|+..+-+..|.++++. +.| -...|..+...|-..|+++.|..+|++..+-..+-
T Consensus 342 LRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred HhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 22333334444443322 111 12346677788888999999999999887764332
Q ss_pred C---HHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCC----------C-------CHHHHHHHHHHHHhcCChHHHHHHH
Q 012126 305 D---IVHYNTVVLGFCREGRAIDACKVLEDMPSNGCL----------P-------NLVSYRTLVGGLCDQGMFDVAKKYM 364 (470)
Q Consensus 305 ~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----------p-------~~~~~~~li~~~~~~g~~~~a~~~~ 364 (470)
- ..+|-.-..+-.+..+++.|+++++......-. | +...|...++.-...|-++....++
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 2 234555555556778888888888876442111 1 2234555555556677888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHc---CCcHHHHHHHHHHHHH
Q 012126 365 QLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHE-DTWVMIVPQICA---GEEMEKLGEVLNEIVK 439 (470)
Q Consensus 365 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~g~~~~a~~~~~~m~~ 439 (470)
+++++..+.-. .+.-.....+-.+.-++++.++|++-+..--.|++ ..|+..+..+.+ .-+.+.|..+|+++++
T Consensus 501 driidLriaTP-qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 501 DRIIDLRIATP-QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHhcCCH-HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 88877543221 11111111223344456666666554443222333 255555444432 2356666677776666
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.8e-07 Score=81.67 Aligned_cols=272 Identities=13% Similarity=-0.004 Sum_probs=206.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHH
Q 012126 125 HYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSY 204 (470)
Q Consensus 125 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 204 (470)
-++.+......+...+...|+.++|+..|++... +.|+..+---+-..+....|+++....+...+....- -....|
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~w 303 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHW 303 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhh
Confidence 4678899999999999999999999999998876 4466555444445555577778888888888876431 244556
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 012126 205 NIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRK 284 (470)
Q Consensus 205 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 284 (470)
-.-.......+++..|+.+-++.++.+.. +...|-.-...+...++.++|.-.|+......+- +...|..|+.+|...
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhh
Confidence 55666667889999999999888876433 4555555556788899999999999998776432 778999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-hcCCHhHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCChHHHH
Q 012126 285 KKLREAYKLLCRMKVKGCNPDIVHYNTVV-LGFC-REGRAIDACKVLEDMPSNGCLPN-LVSYRTLVGGLCDQGMFDVAK 361 (470)
Q Consensus 285 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~ 361 (470)
|.+.+|..+-+...+. +..+..+...+. ..+. ....-++|.++++..... .|+ ....+.+...|...|..+.+.
T Consensus 382 ~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 382 KRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred chHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHH
Confidence 9999988776655443 123444444432 2222 223356788898887764 465 445667778889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 012126 362 KYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAG 406 (470)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (470)
.+++..... .||....+.|.+.+...+.+.+|.+.|...++.+
T Consensus 459 ~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 459 KLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 999998874 7899999999999999999999999999998854
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.18 E-value=2.3e-08 Score=94.27 Aligned_cols=198 Identities=16% Similarity=0.109 Sum_probs=120.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC-----CC-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-----CCC-CCH-
Q 012126 206 IMMRAFCFNGDISIAYTLFNKMFER-----GV-MP-DVESYRILMQGLCRKSQVNRAVDLLEDMLNK-----GFV-PDT- 271 (470)
Q Consensus 206 ~li~~~~~~g~~~~a~~~~~~m~~~-----~~-~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~- 271 (470)
.+...|...+++++|..+|+++..- |- .| -..+++.|..+|.+.|++++|...++...+- |.. |.+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 4556677777777777777766532 21 11 2345566666777777777766666654421 111 121
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCC----CHHHHHHHHHHHHhcCCHhHHHHHHHhchhC----CC--C
Q 012126 272 LSYTTLLNSLCRKKKLREAYKLLCRMKVK---GCNP----DIVHYNTVVLGFCREGRAIDACKVLEDMPSN----GC--L 338 (470)
Q Consensus 272 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~--~ 338 (470)
..++.+...++..+++++|..+++...+. -..+ -..+++.|...|...|++++|.+++++.... +- .
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 23455566667777777777777654332 1111 2356777777788888888888777776442 11 1
Q ss_pred C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCC-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 012126 339 P-NLVSYRTLVGGLCDQGMFDVAKKYMQLMIS----KGF-SP-HFSVSHALIKGFCNVGKVDEACGVLEELL 403 (470)
Q Consensus 339 p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 403 (470)
+ ....++.|...|.+.+..++|.++|.+... .|. .| ...+|..|...|...|++++|.++.+...
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1 234566677777777777777777766443 221 12 24577778888888888888888777664
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.17 E-value=6.1e-08 Score=87.45 Aligned_cols=224 Identities=11% Similarity=-0.018 Sum_probs=135.4
Q ss_pred hhhHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 012126 182 LRPAFDLFKSAHKHG-VLP--NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDL 258 (470)
Q Consensus 182 ~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 258 (470)
.+.++.-+.+++... ..| ....|..+...|...|+.++|...|++..+..+. +...|+.+...+...|++++|++.
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 455555555555322 111 2345666777777888888888888887776543 577778888888888888888888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCC
Q 012126 259 LEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCL 338 (470)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 338 (470)
|+...+.... +..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|...+.+..... .
T Consensus 121 ~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~ 196 (296)
T PRK11189 121 FDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-D 196 (296)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-C
Confidence 8888776544 4566777777777788888888888887765 3433211222222345567888888886644321 2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CC--C-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 012126 339 PNLVSYRTLVGGLCDQGMFDVAKKYMQLMISK---GF--S-PHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHED 412 (470)
Q Consensus 339 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~--~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 412 (470)
|+...+ .+ .....|+...+ +.++.+.+. .. . .....|..+...+.+.|++++|...|++.++.++ ||..
T Consensus 197 ~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~~~ 271 (296)
T PRK11189 197 KEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YNFV 271 (296)
T ss_pred ccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-chHH
Confidence 222221 12 22334555443 244444321 10 1 1234677777888888888888888888877542 2444
Q ss_pred HHH
Q 012126 413 TWV 415 (470)
Q Consensus 413 ~~~ 415 (470)
-+.
T Consensus 272 e~~ 274 (296)
T PRK11189 272 EHR 274 (296)
T ss_pred HHH
Confidence 333
No 75
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=9.8e-08 Score=87.85 Aligned_cols=374 Identities=10% Similarity=-0.017 Sum_probs=257.1
Q ss_pred HHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCC----CCCHHHHHHHHHHHH
Q 012126 66 QKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHY----PVTPSLFTYLIKIYA 141 (470)
Q Consensus 66 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~ 141 (470)
+.++....+.++|...|..+...+ .-..+.+..++....- .+.+.++.+..... ..+......+.....
T Consensus 148 gk~y~al~n~~~ar~~Y~~Al~~D--~~c~Ea~~~lvs~~ml-----t~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~ 220 (611)
T KOG1173|consen 148 GKVYVALDNREEARDKYKEALLAD--AKCFEAFEKLVSAHML-----TAQEEFELLESLDLAMLTKEDVERLEILYELKL 220 (611)
T ss_pred eehhhhhccHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHhc-----chhHHHHHHhcccHHhhhhhHHHHHHHHHHhhh
Confidence 456667788889999999887543 1233444444433221 22222333322211 123333333333331
Q ss_pred HcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 012126 142 ESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAY 221 (470)
Q Consensus 142 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 221 (470)
....-+.....-.+..-.+..-+......-...++ .+.++.+..++++.+.+... +....+..-|.++...|+..+-.
T Consensus 221 ~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y-~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf 298 (611)
T KOG1173|consen 221 CKNRNEESLTRNEDESLIGLAENLDLLAEKADRLY-YGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLF 298 (611)
T ss_pred hhhccccccccCchhhhhhhhhcHHHHHHHHHHHH-HcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHH
Confidence 11111111111111111123334444444455555 45569999999999988653 35566666677889999988888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012126 222 TLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKG 301 (470)
Q Consensus 222 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 301 (470)
.+=.++.+.-+. ...+|-.+.--|...|...+|.+.|.+....+.. =...|-.+...|+-.|..++|...+....+.
T Consensus 299 ~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl- 375 (611)
T KOG1173|consen 299 LLSHKLVDLYPS-KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL- 375 (611)
T ss_pred HHHHHHHHhCCC-CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-
Confidence 888888887543 7789999988899999999999999998765433 2346788888999999999999988877553
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----C--CCCC
Q 012126 302 CNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISK----G--FSPH 375 (470)
Q Consensus 302 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~--~~~~ 375 (470)
++-..--+--+.--|.+.+..+.|.++|.+.... .+-|+..++-+.......+.+.+|..+|+..+.. + ..-.
T Consensus 376 ~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w 454 (611)
T KOG1173|consen 376 MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFW 454 (611)
T ss_pred ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccch
Confidence 1111112223445588899999999999998774 3446777887777777889999999999887631 1 1124
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHccccCCceeeecccch
Q 012126 376 FSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVEIKGDTRIVEAGIGL 455 (470)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~ 455 (470)
..+++.|..+|.+.+.+++|+..++..+... +-+..++.++.-.|...|+++.|.+.|.+.+ .+.||..+...+++.
T Consensus 455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 455 EPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKL 531 (611)
T ss_pred hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHH
Confidence 5678899999999999999999999998864 4488999999999999999999999999998 788998777777664
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=4e-08 Score=88.59 Aligned_cols=220 Identities=11% Similarity=-0.025 Sum_probs=158.6
Q ss_pred cCChhHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 012126 214 NGDISIAYTLFNKMFERG-VMP--DVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREA 290 (470)
Q Consensus 214 ~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 290 (470)
.+..+.++.-+.+++... ..| ....|..+...|...|+.++|...|++..+..+. +...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 356677788887877542 222 2456778888899999999999999999987654 788999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 012126 291 YKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISK 370 (470)
Q Consensus 291 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 370 (470)
...|++..+.. +-+..+|..+..++...|++++|++.++...+. .|+..........+...++.++|...+.+....
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999998863 224677888888899999999999999998885 354332222222345677899999999776543
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---CCC---CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHccc
Q 012126 371 GFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKA---GEA---PHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVEI 442 (470)
Q Consensus 371 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 442 (470)
. .++... ..+. ....|+.+++ +.++.+.+. .+. .....|..+...+.+.|++++|...|++.++.++
T Consensus 195 ~-~~~~~~-~~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 L-DKEQWG-WNIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred C-CccccH-HHHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2 333222 2233 2335555444 344444421 111 1235799999999999999999999999997653
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.12 E-value=1.3e-06 Score=83.50 Aligned_cols=346 Identities=15% Similarity=0.143 Sum_probs=195.1
Q ss_pred CCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCcc-CHHHHH
Q 012126 91 FRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKP-LPKQLN 169 (470)
Q Consensus 91 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~ 169 (470)
+.-+...|..+.-++...|+|+.+.+.|+......+. ..+.|+.+...|...|.-..|+.+++.-....-.| |...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4457788888888889999999999999887765432 55678888888888888888888887755433224 333333
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHHCCCCC
Q 012126 170 RILELLVTHRNYLRPAFDLFKSAHKH--GV--LPNTKSYNIMMRAFCFN-----------GDISIAYTLFNKMFERGVMP 234 (470)
Q Consensus 170 ~ll~~~~~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~~p 234 (470)
..-..|....+..++++++-.+.... +. ......|..+.-+|... ....++.+.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 33344444444444444444444331 00 01112222222222111 1123334444444333222
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC-----------
Q 012126 235 DVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVK-GC----------- 302 (470)
Q Consensus 235 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~----------- 302 (470)
|.....-+.--|+..++.+.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+...+. |.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 111111122223334444444444444444332333444444443444344444444333322111 00
Q ss_pred --------------------------------------------------------------------------------
Q 012126 303 -------------------------------------------------------------------------------- 302 (470)
Q Consensus 303 -------------------------------------------------------------------------------- 302 (470)
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence
Q ss_pred --C--CC------HHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 012126 303 --N--PD------IVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGF 372 (470)
Q Consensus 303 --~--~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 372 (470)
. |+ ...|......+.+.+..++|...+.+.... .......|......+...|.+++|.+.|......+
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld- 714 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD- 714 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-
Confidence 0 00 011223334445555555555555554442 12234445555556667788888888888877743
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcc
Q 012126 373 SPHFSVSHALIKGFCNVGKVDEACG--VLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVE 441 (470)
Q Consensus 373 ~~~~~~~~~li~~~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 441 (470)
+.+.....++..++...|+..-|.. ++.++++.+. .+...|..+...+.+.|+.+.|.++|.-..+..
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 2345578889999999998888877 9999999764 378899999999999999999999999988654
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.12 E-value=2.3e-06 Score=80.39 Aligned_cols=362 Identities=14% Similarity=0.113 Sum_probs=229.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 012126 63 CRVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAE 142 (470)
Q Consensus 63 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 142 (470)
..++-+.+...++++|+..|+.+.... +.+...+.-+.-.-++.|+++........+.+.. +.....|..++.++.-
T Consensus 79 Hv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L 155 (700)
T KOG1156|consen 79 HVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHL 155 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHH
Confidence 356677778888888888888887655 4566677666666677788887777777766653 3445567778888888
Q ss_pred cCCchhHHHHHHHHHhCC-CccCHHHHHHHHHHHHh-----cCCChhhHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcC
Q 012126 143 SNLPDRALKTFRSMLEFN-CKPLPKQLNRILELLVT-----HRNYLRPAFDLFKSAHKHGVLPNTKSY-NIMMRAFCFNG 215 (470)
Q Consensus 143 ~g~~~~A~~~~~~~~~~~-~~p~~~~~~~ll~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g 215 (470)
.|+...|..+.++..+.. ..|+...+......+++ ..|..+.|.+.+..-...- .|-..+ ..-...+.+.+
T Consensus 156 ~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dkla~~e~ka~l~~kl~ 233 (700)
T KOG1156|consen 156 LGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--VDKLAFEETKADLLMKLG 233 (700)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--HHHHHHhhhHHHHHHHHh
Confidence 899999999988887643 34666666554443332 3444666666665544321 233333 34456778889
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCChHHHH-HHHHHHHhC----------------------------
Q 012126 216 DISIAYTLFNKMFERGVMPDVESYRILM-QGLCRKSQVNRAV-DLLEDMLNK---------------------------- 265 (470)
Q Consensus 216 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~-~~~~~~~~~---------------------------- 265 (470)
++++|..++..++.++ ||..-|...+ .++.+..+.-++. .+|....+.
T Consensus 234 ~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 234 QLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYL 311 (700)
T ss_pred hHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHH
Confidence 9999999999998874 4555554444 4443333333333 444443222
Q ss_pred ------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cC----------CCCCHH--HHHHHHHHHHhcCCHh
Q 012126 266 ------GFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKV----KG----------CNPDIV--HYNTVVLGFCREGRAI 323 (470)
Q Consensus 266 ------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~----------~~~~~~--~~~~li~~~~~~~~~~ 323 (470)
|+. .++..+...|-.-...+-..++.-.+.. .| -+|... ++..++..|-..|+++
T Consensus 312 ~~~l~Kg~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~ 388 (700)
T KOG1156|consen 312 RPLLSKGVP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE 388 (700)
T ss_pred HHHhhcCCC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHH
Confidence 211 1223333333221111111111111111 11 144443 4456778899999999
Q ss_pred HHHHHHHhchhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 012126 324 DACKVLEDMPSNGCLPNL-VSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEEL 402 (470)
Q Consensus 324 ~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 402 (470)
.|...++..... .|+. ..|..=.+.+...|++++|..++++..+.+ .+|..+-.--..-..+++++++|.++...+
T Consensus 389 ~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 389 VALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 999999998875 4553 345555678899999999999999998875 456555445566667889999999999999
Q ss_pred HHCCCCCCHH--------HHHHH--HHHHHcCCcHHHHHHHHHHHHH
Q 012126 403 LKAGEAPHED--------TWVMI--VPQICAGEEMEKLGEVLNEIVK 439 (470)
Q Consensus 403 ~~~~~~p~~~--------~~~~l--~~~~~~~g~~~~a~~~~~~m~~ 439 (470)
.+.|. +.. .|..+ ..+|.+.|++..|++-|..+.+
T Consensus 466 Tr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 466 TREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 87763 222 44444 3467788888888766665543
No 79
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.09 E-value=1.4e-06 Score=92.12 Aligned_cols=338 Identities=13% Similarity=0.029 Sum_probs=214.3
Q ss_pred HHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCC------ccC-HHHHHHHHHHHH
Q 012126 104 KLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNC------KPL-PKQLNRILELLV 176 (470)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~p~-~~~~~~ll~~~~ 176 (470)
.....|+++.+..++..+.......++.........+...|++++|...+......-- .+. ......++....
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3455677777777776652221112333344555666788999999999987654210 111 122233344455
Q ss_pred hcCCChhhHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHH
Q 012126 177 THRNYLRPAFDLFKSAHKHGVLPNT----KSYNIMMRAFCFNGDISIAYTLFNKMFER----GV-MPDVESYRILMQGLC 247 (470)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~~ll~~~~ 247 (470)
...|++++|...+++....-...+. ...+.+...+...|++++|...+++.... |. .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 5778899999999988763211222 34456667778899999999999887643 11 111234455667788
Q ss_pred HcCChHHHHHHHHHHHhC----CCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHH
Q 012126 248 RKSQVNRAVDLLEDMLNK----GFV--P-DTLSYTTLLNSLCRKKKLREAYKLLCRMKVKG--CNP--DIVHYNTVVLGF 316 (470)
Q Consensus 248 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~--~~~~~~~li~~~ 316 (470)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+++..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998886542 211 1 22334455666777899999999998875431 112 233444566678
Q ss_pred HhcCCHhHHHHHHHhchhCC--CCCCHH--H-H-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 012126 317 CREGRAIDACKVLEDMPSNG--CLPNLV--S-Y-RTLVGGLCDQGMFDVAKKYMQLMISKGFSPH---FSVSHALIKGFC 387 (470)
Q Consensus 317 ~~~~~~~~a~~~~~~m~~~~--~~p~~~--~-~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~ 387 (470)
...|++++|.+.+....... ...... . . ...+..+...|+.+.|..++........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999888875421 111110 1 0 1122344568899999998877554221111 112345667788
Q ss_pred ccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHcc
Q 012126 388 NVGKVDEACGVLEELLKA----GEAPH-EDTWVMIVPQICAGEEMEKLGEVLNEIVKVE 441 (470)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 441 (470)
..|+.++|...+++.... |..++ ..+...+..++.+.|+.++|.+.+.++++..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999987653 32222 2356677788899999999999999998754
No 80
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=2.2e-06 Score=79.64 Aligned_cols=370 Identities=15% Similarity=0.129 Sum_probs=203.6
Q ss_pred HHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHH--HHHHH--HH
Q 012126 67 KLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTY--LIKIY--AE 142 (470)
Q Consensus 67 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~--~~ 142 (470)
......+++++|++..+.++... +.+...+..-+-++++.++|++|..+.+.-... .+++. +=.+| -+
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~------~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL------LVINSFFFEKAYCEYR 91 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh------hhcchhhHHHHHHHHH
Confidence 44567889999999999987553 556677777788899999999998665542211 11111 22333 35
Q ss_pred cCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCC------------------------
Q 012126 143 SNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVL------------------------ 198 (470)
Q Consensus 143 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~------------------------ 198 (470)
.+..|+|+..++ |..++..-...+=...+...+++++|.++|+.+.+.+..
T Consensus 92 lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~ 166 (652)
T KOG2376|consen 92 LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS 166 (652)
T ss_pred cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence 788888888877 333433322222222333555688888888888654432
Q ss_pred ---CCHHHHHH---HHHHHHhcCChhHHHHHHHHHHHCC-------------CCCCHH-HHHHHHHHHHHcCChHHHHHH
Q 012126 199 ---PNTKSYNI---MMRAFCFNGDISIAYTLFNKMFERG-------------VMPDVE-SYRILMQGLCRKSQVNRAVDL 258 (470)
Q Consensus 199 ---~~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~~-------------~~p~~~-~~~~ll~~~~~~~~~~~a~~~ 258 (470)
....+|.. ....+...|++.+|+++++...+.+ +.-... .-.-|...+...|+.++|..+
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 00112322 2334567899999999998873211 111111 122345567788999999999
Q ss_pred HHHHHhCCCCCCH----hhHHHHHHHHHhc---------------------------------------------CCHHH
Q 012126 259 LEDMLNKGFVPDT----LSYTTLLNSLCRK---------------------------------------------KKLRE 289 (470)
Q Consensus 259 ~~~~~~~~~~~~~----~~~~~ll~~~~~~---------------------------------------------~~~~~ 289 (470)
|...++.... |. ..-|.|+.+-... +..+.
T Consensus 247 y~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q 325 (652)
T KOG2376|consen 247 YVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQ 325 (652)
T ss_pred HHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 9998877543 32 1122222111000 01111
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--
Q 012126 290 AYKLLCRMKVKGCNPDIVHYNTVVLGFC--REGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQ-- 365 (470)
Q Consensus 290 a~~~~~~m~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~-- 365 (470)
+.++-..+. +..|. ..+.+++.... +...+..+.+++...-+....-.....-.+++.....|+++.|.+++.
T Consensus 326 ~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 326 VRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 111111110 11222 22333333322 222456666666665554222223455556667778889999988888
Q ss_pred ------HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHH----HHHHHHHHHHcCCcHHHHHHH
Q 012126 366 ------LMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKA--GEAPHED----TWVMIVPQICAGEEMEKLGEV 433 (470)
Q Consensus 366 ------~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~----~~~~l~~~~~~~g~~~~a~~~ 433 (470)
.+.+.+..| .+..+++..+.+.++.+.|..++.+.+.. .-.+... ++.-++..-.+.|+.++|..+
T Consensus 403 ~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 403 LESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred hhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 444444444 35566777777777777777777666431 0111222 333333444567888888888
Q ss_pred HHHHHHccccCCceeeecccchh
Q 012126 434 LNEIVKVEIKGDTRIVEAGIGLE 456 (470)
Q Consensus 434 ~~~m~~~~~~p~~~~~~~~~~~~ 456 (470)
++++.+.+. +|..++.-++...
T Consensus 481 leel~k~n~-~d~~~l~~lV~a~ 502 (652)
T KOG2376|consen 481 LEELVKFNP-NDTDLLVQLVTAY 502 (652)
T ss_pred HHHHHHhCC-chHHHHHHHHHHH
Confidence 888886432 3444444333333
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.08 E-value=2.3e-07 Score=76.00 Aligned_cols=192 Identities=15% Similarity=0.032 Sum_probs=91.4
Q ss_pred HHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 012126 136 LIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNG 215 (470)
Q Consensus 136 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 215 (470)
|.-.|...|+...|..-+++.++ ..|+......++..++...|..+.|.+.|++..+.... +-.+.|...-.+|..|
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg 117 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCC
Confidence 44444445555555555544444 22444434444444444444444444444444443322 4444555555555555
Q ss_pred ChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 012126 216 DISIAYTLFNKMFERG-VMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLL 294 (470)
Q Consensus 216 ~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 294 (470)
++++|...|++....- ..--..+|..+.-+..+.|+.+.|...|++.++.... ...+.-.+.....+.|++-.|...+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHH
Confidence 5555555555554431 1112344555555555555555555555555554333 2334444455555555555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhc
Q 012126 295 CRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDM 332 (470)
Q Consensus 295 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 332 (470)
+.....+. ++..+.-..|+.--+.|+.+.+-+.=..+
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 55554433 45555444555555555555544444433
No 82
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=2.4e-07 Score=78.59 Aligned_cols=290 Identities=15% Similarity=0.096 Sum_probs=145.7
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHh
Q 012126 98 YLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVT 177 (470)
Q Consensus 98 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 177 (470)
+..++..+++..++..|++++..-.+.. |.+......|..+|-...++..|-..++++-. ..|....|...-.....
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHH
Confidence 4444555556666666666666555443 33445555566666666666666666666654 23444444433332222
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHHH--H--HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH
Q 012126 178 HRNYLRPAFDLFKSAHKHGVLPNTKSYNIMM--R--AFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVN 253 (470)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li--~--~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 253 (470)
..+.+..|+.+...|... ++ ..+..+ . ..-..+++..+..+.++....| +..+.+...-...+.|+++
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~--L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PA--LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HH--HHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 344455566665555432 11 111111 1 1123455556666665554332 3333333333445566666
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------CCHH--------HHHHH
Q 012126 254 RAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCN-------------PDIV--------HYNTV 312 (470)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-------------~~~~--------~~~~l 312 (470)
.|.+-|+...+-+---....|+..+.-| +.|+.+.|++...++.+.|+. ||+. .-+.+
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 6666666655532222344555444333 346666666666666655432 1111 11222
Q ss_pred H-------HHHHhcCCHhHHHHHHHhchhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012126 313 V-------LGFCREGRAIDACKVLEDMPSN-GCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIK 384 (470)
Q Consensus 313 i-------~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 384 (470)
+ ..+.+.|+++.|.+-+-.|.-. ....|.+|...+.-. -..+++.+...-+.-+..... -...||..++-
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLl 318 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLL 318 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHH
Confidence 2 2345667777777777766533 223455665544322 122344444444555554432 22356666777
Q ss_pred HHHccCCHHHHHHHHHH
Q 012126 385 GFCNVGKVDEACGVLEE 401 (470)
Q Consensus 385 ~~~~~g~~~~a~~~~~~ 401 (470)
.||+..-++-|-.++.+
T Consensus 319 lyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHhhhHHHhHHHHHHhh
Confidence 77777777777666654
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.06 E-value=1.4e-06 Score=81.41 Aligned_cols=202 Identities=10% Similarity=0.015 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-CCH--hhHHHHHH
Q 012126 203 SYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFV-PDT--LSYTTLLN 279 (470)
Q Consensus 203 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~ll~ 279 (470)
....+...+...|++++|...+++..+.... +...+..+..++...|++++|+..+++....... ++. ..|..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 3344455666677777777777777665432 4555666666777777777777777766654321 222 23445666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHhcCCHhHHHHH--HHhchhCCC--CCCHHHHHHHHHHH
Q 012126 280 SLCRKKKLREAYKLLCRMKVKGC-NPDIVHY-N--TVVLGFCREGRAIDACKV--LEDMPSNGC--LPNLVSYRTLVGGL 351 (470)
Q Consensus 280 ~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~-~--~li~~~~~~~~~~~a~~~--~~~m~~~~~--~p~~~~~~~li~~~ 351 (470)
.+...|++++|..++++...... .+..... + .++.-+...|....+.++ +........ ............++
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~ 274 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALAL 274 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 66777777777777777643321 1111111 1 222223333332222222 111110000 11112222455566
Q ss_pred HhcCChHHHHHHHHHHHHCCCC------C--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 012126 352 CDQGMFDVAKKYMQLMISKGFS------P--HFSVSHALIKGFCNVGKVDEACGVLEELLKA 405 (470)
Q Consensus 352 ~~~g~~~~a~~~~~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (470)
...|+.+.|..+++.+...... . .....-...-++...|+.++|.+.+.+.+..
T Consensus 275 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 275 AGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred hcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6777777777777776552211 0 1112222223355778888888887776653
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.04 E-value=2.4e-07 Score=75.88 Aligned_cols=186 Identities=16% Similarity=0.060 Sum_probs=102.6
Q ss_pred HHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCc
Q 012126 67 KLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLP 146 (470)
Q Consensus 67 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 146 (470)
--+..+||+..|..-++.+++.+ +.+..++..+...|-+.|..+.|.+.|+...+.. |.+-.+.|.-...+|..|++
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCCh
Confidence 44556777777777777777665 4556667777777777777777777777776665 55666677777777777777
Q ss_pred hhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012126 147 DRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNK 226 (470)
Q Consensus 147 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 226 (470)
++|.+.|++.......+....-..=+..|....|+.+.|...|++.++.... ...+.-.+.+...+.|++-.|...++.
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHH
Confidence 7777777776653322222222222223333344445555555544444322 233334444444444555555444444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 012126 227 MFERGVMPDVESYRILMQGLCRKSQVNRAVD 257 (470)
Q Consensus 227 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 257 (470)
....+. ++..+.-..|..-...|+.+.+-+
T Consensus 199 ~~~~~~-~~A~sL~L~iriak~~gd~~~a~~ 228 (250)
T COG3063 199 YQQRGG-AQAESLLLGIRIAKRLGDRAAAQR 228 (250)
T ss_pred HHhccc-ccHHHHHHHHHHHHHhccHHHHHH
Confidence 444433 344444444444444444444443
No 85
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.03 E-value=1.6e-05 Score=74.84 Aligned_cols=368 Identities=12% Similarity=0.088 Sum_probs=211.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHhhcCCCC-----CCCHHHHHHHHHHHHccCC---chHHHHHHHHHhhCCCCCCHHHHHH
Q 012126 64 RVQKLIASQSDPLLAKEIFDYASRQPNF-----RHSNSTYLILILKLGRAKY---FSLIDDILITLKSEHYPVTPSLFTY 135 (470)
Q Consensus 64 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (470)
.-...+...+++++|.+.+..+..++.+ +.+...|..+-....+.-+ --....+++.+...-...--..|.+
T Consensus 174 eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~S 253 (835)
T KOG2047|consen 174 EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCS 253 (835)
T ss_pred HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHH
Confidence 3456677888888888888877654421 2334455555554444322 2233445555444321222467899
Q ss_pred HHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhc---------------CC------ChhhHHHHHHHHHH
Q 012126 136 LIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTH---------------RN------YLRPAFDLFKSAHK 194 (470)
Q Consensus 136 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---------------~~------~~~~a~~~~~~~~~ 194 (470)
|.+.|.+.|.++.|.++|++.+.. ..+...+..+...++.- .+ +++..+.-|+.+..
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 999999999999999999987763 22333344443333210 00 13334444444443
Q ss_pred CCC-----------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHcCChHHHHH
Q 012126 195 HGV-----------LPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMP------DVESYRILMQGLCRKSQVNRAVD 257 (470)
Q Consensus 195 ~~~-----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p------~~~~~~~ll~~~~~~~~~~~a~~ 257 (470)
.+. .-++..|..-+. +..|+..+...+|.+.+.. +.| -...|..+...|-..|+++.|..
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 221 113333433333 2356677777777777654 222 23457778888888999999999
Q ss_pred HHHHHHhCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----------CCCC------CHHHHHHHHHHHH
Q 012126 258 LLEDMLNKGFVPD---TLSYTTLLNSLCRKKKLREAYKLLCRMKVK-----------GCNP------DIVHYNTVVLGFC 317 (470)
Q Consensus 258 ~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----------~~~~------~~~~~~~li~~~~ 317 (470)
+|++..+...+-- ..+|....++=.+..+++.|.++++..... +.++ +...|...++.--
T Consensus 409 ifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 409 IFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE 488 (835)
T ss_pred HHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH
Confidence 9998877644311 345666666666778888888888766432 1111 1223444455555
Q ss_pred hcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHc---cCCHH
Q 012126 318 REGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPH-FSVSHALIKGFCN---VGKVD 393 (470)
Q Consensus 318 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~---~g~~~ 393 (470)
..|-++....+|+.+.+..+.......| ...-+..+.-++++.+++++-+..=-.|+ ..+|+..+.-+.+ ...++
T Consensus 489 s~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klE 567 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLE 567 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHH
Confidence 6677777888888887765432222222 22223445567777777776555322233 2366666655443 23578
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH--HHcCCcHHHHHHHHHHHH
Q 012126 394 EACGVLEELLKAGEAPHEDTWVMIVPQ--ICAGEEMEKLGEVLNEIV 438 (470)
Q Consensus 394 ~a~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~ 438 (470)
.|..+|++.++ |++|...-+-.|+-+ -.+.|....|+.+++++-
T Consensus 568 raRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 568 RARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888888887 565544433233222 124567777777777754
No 86
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.01 E-value=3.6e-06 Score=73.07 Aligned_cols=304 Identities=13% Similarity=0.060 Sum_probs=176.0
Q ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHH
Q 012126 94 SNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILE 173 (470)
Q Consensus 94 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 173 (470)
+..-..-+...+...|++..|+.-|...++.+ |.+-.++-.-...|...|+..-|+.=+.+.++ .+||-.....--.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhc
Confidence 34445556677777788888887777766543 22222233344567777877777777777776 5576655544444
Q ss_pred HHHhcCCChhhHHHHHHHHHHCCCCCC------------HHHH--HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 012126 174 LLVTHRNYLRPAFDLFKSAHKHGVLPN------------TKSY--NIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESY 239 (470)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 239 (470)
.+.-..|.++.|..-|+.+++....-+ ...| ...+..+.-.|+...|+.....+++..+ -|...|
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHH
Confidence 444456667888888888776543111 1111 2234445567788888888877777633 367777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH----HHHH---
Q 012126 240 RILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVH----YNTV--- 312 (470)
Q Consensus 240 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~l--- 312 (470)
..-..+|...|++..|+.=++...+..-. +..++--+-..+...|+.+.++...++.++. .||... |..+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHH
Confidence 77777888888888887776666554433 4455555666677778888888877777765 444322 1111
Q ss_pred ------HHHHHhcCCHhHHHHHHHhchhCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012126 313 ------VLGFCREGRAIDACKVLEDMPSNGCLPNLVS---YRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALI 383 (470)
Q Consensus 313 ------i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 383 (470)
+....+.+++.++++-.+...+......... +..+-.++...|++.+|++...++++.. +.|..++.--.
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRA 348 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHH
Confidence 1112344455555555555444322111122 2233334445566666666666665531 22255555555
Q ss_pred HHHHccCCHHHHHHHHHHHHHC
Q 012126 384 KGFCNVGKVDEACGVLEELLKA 405 (470)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~ 405 (470)
.+|.-...++.|+.-|+...+.
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhc
Confidence 6666666666666666666553
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.94 E-value=2.6e-08 Score=88.58 Aligned_cols=148 Identities=19% Similarity=0.140 Sum_probs=68.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHh----cC
Q 012126 280 SLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCD----QG 355 (470)
Q Consensus 280 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g 355 (470)
++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..++.. .+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCch
Confidence 344455555555555432 133444445555555555555555555555432 22 222333333321 22
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcH-HHHHHHH
Q 012126 356 MFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEM-EKLGEVL 434 (470)
Q Consensus 356 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~ 434 (470)
.+.+|..+|+++.+. ..++..+.+.+..+....|++++|.+++++..+.+. -+..+...++-+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 355555555555443 344555555555555555566666555555544332 2344444455544445544 4455555
Q ss_pred HHHH
Q 012126 435 NEIV 438 (470)
Q Consensus 435 ~~m~ 438 (470)
.++.
T Consensus 260 ~qL~ 263 (290)
T PF04733_consen 260 SQLK 263 (290)
T ss_dssp HHCH
T ss_pred HHHH
Confidence 5554
No 88
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=1.6e-06 Score=75.48 Aligned_cols=332 Identities=13% Similarity=0.092 Sum_probs=181.2
Q ss_pred hcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCC-----------------------
Q 012126 70 ASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHY----------------------- 126 (470)
Q Consensus 70 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------------- 126 (470)
-..||+++|+..+..+.+.++ ++...+..+.....-.|.+.+|..+-....+..+
T Consensus 68 fhLgdY~~Al~~Y~~~~~~~~--~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~ 145 (557)
T KOG3785|consen 68 FHLGDYEEALNVYTFLMNKDD--APAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHS 145 (557)
T ss_pred HhhccHHHHHHHHHHHhccCC--CCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 457999999999999877653 4555555555444445666666655544322100
Q ss_pred --CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCC-HHH
Q 012126 127 --PVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPN-TKS 203 (470)
Q Consensus 127 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~ 203 (470)
..+.+..-+|....-..-.+++|++++.+.... .|.-...|..+..|+...+.++-+.++++-..+.- || ...
T Consensus 146 ~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~--pdStiA 221 (557)
T KOG3785|consen 146 SLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF--PDSTIA 221 (557)
T ss_pred HHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC--CCcHHH
Confidence 001122223444444445678899999988774 36677788888888877777777777777666532 22 233
Q ss_pred HHHHHHHHHhc--CChhHH--HH----------HHHHHHHCC------------CCC-----CHHHHHHHHHHHHHcCCh
Q 012126 204 YNIMMRAFCFN--GDISIA--YT----------LFNKMFERG------------VMP-----DVESYRILMQGLCRKSQV 252 (470)
Q Consensus 204 ~~~li~~~~~~--g~~~~a--~~----------~~~~m~~~~------------~~p-----~~~~~~~ll~~~~~~~~~ 252 (470)
.|.......+. |+..+. .+ ..+.+.+++ +.| -...-..|+--|.+.+++
T Consensus 222 ~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dV 301 (557)
T KOG3785|consen 222 KNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDV 301 (557)
T ss_pred HHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccH
Confidence 33222221111 111100 00 111111110 000 011112233345555666
Q ss_pred HHHHHHHHHHH--------------------------------------hCCCCCCHh-hHHHHHHHHHhcCCHHHHHHH
Q 012126 253 NRAVDLLEDML--------------------------------------NKGFVPDTL-SYTTLLNSLCRKKKLREAYKL 293 (470)
Q Consensus 253 ~~a~~~~~~~~--------------------------------------~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~ 293 (470)
.+|..+.+++. ..+..-|.. --.++..++.-..++++++-.
T Consensus 302 qeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Y 381 (557)
T KOG3785|consen 302 QEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTY 381 (557)
T ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 66655544431 111111110 111222223333345555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHCCC
Q 012126 294 LCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRT-LVGGLCDQGMFDVAKKYMQLMISKGF 372 (470)
Q Consensus 294 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~~~ 372 (470)
+..+...-...|...| .+.++++..|.+.+|+++|-.+....++ |..+|.+ |.++|...+.++.|..++-++..
T Consensus 382 lnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t--- 456 (557)
T KOG3785|consen 382 LNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT--- 456 (557)
T ss_pred HHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---
Confidence 5555444333333334 3678888999999999999888765554 4555554 55677899999988877655432
Q ss_pred CCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 012126 373 SPHFSV-SHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTW 414 (470)
Q Consensus 373 ~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 414 (470)
+.+... ...+..-|.+++.+--|-+.|+++...+ |+++-|
T Consensus 457 ~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD--P~pEnW 497 (557)
T KOG3785|consen 457 PSERFSLLQLIANDCYKANEFYYAAKAFDELEILD--PTPENW 497 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC--CCcccc
Confidence 223333 3344467888999988999998887744 666655
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=6.8e-07 Score=75.91 Aligned_cols=294 Identities=13% Similarity=0.109 Sum_probs=202.1
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHH-HH
Q 012126 130 PSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNI-MM 208 (470)
Q Consensus 130 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li 208 (470)
..-+++.+..+.+..++.+|++++..-.+++ |....-.+++..|+....++..|-..++++-..- |...-|.. -.
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~A 85 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQA 85 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHH
Confidence 3346677777788899999999998877754 6566666777777777778999999999998754 55555542 34
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 012126 209 RAFCFNGDISIAYTLFNKMFERGVMPDVESYRILM--QGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKK 286 (470)
Q Consensus 209 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 286 (470)
..+-+.+.+..|+.+...|.+. ++...-..-+ ......+|+..+..+.++....| +..+.+.......+.|+
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecccc
Confidence 6667889999999999888764 1222212222 23345788889998888876443 33444444455668999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCC-------------CCHH--------HHH
Q 012126 287 LREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCL-------------PNLV--------SYR 345 (470)
Q Consensus 287 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-------------p~~~--------~~~ 345 (470)
++.|.+-|+...+.+.-.....||..+..| +.|+++.|++...++.+.|++ ||.. .-+
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S 238 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS 238 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence 999999999988765555677888766555 678999999999999887754 2221 123
Q ss_pred HHHHH-------HHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012126 346 TLVGG-------LCDQGMFDVAKKYMQLMISK-GFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMI 417 (470)
Q Consensus 346 ~li~~-------~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 417 (470)
.++.+ +.+.|+++.|.+.+..|.-+ ....|+.|...+.-.= ..+++.+..+-+.-+++.+. -...||..+
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANl 316 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANL 316 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHH
Confidence 33333 45778888888888877532 2345666665544322 24456566666666666554 346789888
Q ss_pred HHHHHcCCcHHHHHHHHHH
Q 012126 418 VPQICAGEEMEKLGEVLNE 436 (470)
Q Consensus 418 ~~~~~~~g~~~~a~~~~~~ 436 (470)
+-.||+..-++.|-.++.+
T Consensus 317 LllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHhhhHHHhHHHHHHhh
Confidence 8899999888888766544
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=1.8e-06 Score=80.07 Aligned_cols=229 Identities=15% Similarity=0.082 Sum_probs=147.0
Q ss_pred CCCChHHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHH
Q 012126 58 PIGSPCRVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLI 137 (470)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 137 (470)
.-..|...+..+.+.|+...|.-+|+.+.+++ |-+.+.|..|....+..++-..|+..+.+..+.. |.+..+.-.|.
T Consensus 284 ~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLA 360 (579)
T KOG1125|consen 284 DHPDPFKEGCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALA 360 (579)
T ss_pred CCCChHHHHHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHH
Confidence 33456677778888889999999999887665 4678889999999999999999999999988886 66788888899
Q ss_pred HHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHH-----------HHhcCCChhhHHHHHHHHH-HCCCCCCHHHHH
Q 012126 138 KIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILEL-----------LVTHRNYLRPAFDLFKSAH-KHGVLPNTKSYN 205 (470)
Q Consensus 138 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-----------~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~ 205 (470)
-.|...|.-.+|+.+++.-+... |. |..+... +. ....+....++|-++. ..+..+|..+..
T Consensus 361 VSytNeg~q~~Al~~L~~Wi~~~--p~---y~~l~~a~~~~~~~~~~s~~-~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~ 434 (579)
T KOG1125|consen 361 VSYTNEGLQNQALKMLDKWIRNK--PK---YVHLVSAGENEDFENTKSFL-DSSHLAHIQELFLEAARQLPTKIDPDVQS 434 (579)
T ss_pred HHHhhhhhHHHHHHHHHHHHHhC--cc---chhccccCccccccCCcCCC-CHHHHHHHHHHHHHHHHhCCCCCChhHHh
Confidence 99999999899999888765422 10 0000000 00 0001223333443333 333335666666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 012126 206 IMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKK 285 (470)
Q Consensus 206 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 285 (470)
.|.-.|--.|++++|.+.|+..+...+. |..+||-|...++...+.++|+..|.++++..+. =+.+...|.-+|...|
T Consensus 435 ~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG 512 (579)
T KOG1125|consen 435 GLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLG 512 (579)
T ss_pred hhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhh
Confidence 6666666666667766666666655433 5666666666666666666666666666654322 1233334455566666
Q ss_pred CHHHHHHHHHHH
Q 012126 286 KLREAYKLLCRM 297 (470)
Q Consensus 286 ~~~~a~~~~~~m 297 (470)
.+++|.+.|-..
T Consensus 513 ~ykEA~~hlL~A 524 (579)
T KOG1125|consen 513 AYKEAVKHLLEA 524 (579)
T ss_pred hHHHHHHHHHHH
Confidence 666666655443
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.85 E-value=4.1e-07 Score=80.98 Aligned_cols=151 Identities=17% Similarity=0.181 Sum_probs=83.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH----hc
Q 012126 209 RAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLC----RK 284 (470)
Q Consensus 209 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~ 284 (470)
..+...|++++|+++++.. -+.......+.+|.+.++++.|.+.++.|.+.+ .| .+...+..++. ..
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCc
Confidence 4445566666666665432 245555566666666777777777776666542 12 22222333322 23
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHH
Q 012126 285 KKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMF-DVAKKY 363 (470)
Q Consensus 285 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~ 363 (470)
+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+ +-+..++..++.+....|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3566777777776544 34566666666666777777777777776665543 22445555556555666665 556666
Q ss_pred HHHHHHC
Q 012126 364 MQLMISK 370 (470)
Q Consensus 364 ~~~~~~~ 370 (470)
+.++...
T Consensus 259 l~qL~~~ 265 (290)
T PF04733_consen 259 LSQLKQS 265 (290)
T ss_dssp HHHCHHH
T ss_pred HHHHHHh
Confidence 6666553
No 92
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.84 E-value=4.4e-06 Score=84.95 Aligned_cols=244 Identities=11% Similarity=0.016 Sum_probs=185.7
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHcCChHHHHHH
Q 012126 184 PAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMP-----DVESYRILMQGLCRKSQVNRAVDL 258 (470)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~ 258 (470)
.|.++-+.++.. + -+...|-..|......+++++|.+++++.+.. +.+ -...|.++++.-...|.-+...++
T Consensus 1443 saeDferlvrss-P-NSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS-P-NSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CHHHHHHHHhcC-C-CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 344444444433 1 25678888999999999999999999998764 222 234677777777777888899999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCC
Q 012126 259 LEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCL 338 (470)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 338 (470)
|+++.+.. . ....|..|...|.+.+..++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.+..+. -
T Consensus 1520 FeRAcqyc-d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--l 1594 (1710)
T KOG1070|consen 1520 FERACQYC-D-AYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--L 1594 (1710)
T ss_pred HHHHHHhc-c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--c
Confidence 99988752 1 3467889999999999999999999999876 2346788999999999999999999999998774 3
Q ss_pred CC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH--H
Q 012126 339 PN---LVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHED--T 413 (470)
Q Consensus 339 p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~ 413 (470)
|- .......++.-.+.|+.+.+..+|+..... .+-....|+.++++-.++|+.+.+..+|++.+..++.|-.. .
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKff 1673 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFF 1673 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHH
Confidence 33 344555666667899999999999999876 34456799999999999999999999999999988776543 5
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHH
Q 012126 414 WVMIVPQICAGEEMEKLGEVLNE 436 (470)
Q Consensus 414 ~~~l~~~~~~~g~~~~a~~~~~~ 436 (470)
|...+..--+.|+-+.+..+=.+
T Consensus 1674 fKkwLeyEk~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1674 FKKWLEYEKSHGDEKNVEYVKAR 1696 (1710)
T ss_pred HHHHHHHHHhcCchhhHHHHHHH
Confidence 55556544445665544444333
No 93
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=8.5e-07 Score=82.15 Aligned_cols=251 Identities=10% Similarity=0.038 Sum_probs=134.0
Q ss_pred HHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 012126 140 YAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISI 219 (470)
Q Consensus 140 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 219 (470)
+.+.|++.+|.-.|+..+..+ |...-.-..|...-...+.-..|+..+++..+.... |....-.|.-.|...|.-..
T Consensus 295 lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 345666666666666665532 333222222332222333345566666666655432 55566666666666666666
Q ss_pred HHHHHHHHHHCCCC--------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHhcCCHHHH
Q 012126 220 AYTLFNKMFERGVM--------PDVESYRILMQGLCRKSQVNRAVDLLEDMLN-KGFVPDTLSYTTLLNSLCRKKKLREA 290 (470)
Q Consensus 220 a~~~~~~m~~~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a 290 (470)
|.+.++..+...++ ++...-.. ..+.....+....++|-++.. .+..+|..+...|.-.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 66666665443210 00000000 112222233444444444433 33335566666666666667777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012126 291 YKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPN-LVSYRTLVGGLCDQGMFDVAKKYMQLMIS 369 (470)
Q Consensus 291 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 369 (470)
.+.|+..+... +-|...||.|...++...+.++|+..|.+.++ ++|+ +.....|.-+|...|.+.+|.+.|-..+.
T Consensus 450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 77777776652 22456677777777777777777777777766 3454 22333355566777777777776655443
Q ss_pred C---------CCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 012126 370 K---------GFSPHFSVSHALIKGFCNVGKVDEACGV 398 (470)
Q Consensus 370 ~---------~~~~~~~~~~~li~~~~~~g~~~~a~~~ 398 (470)
. +..++..+|..|=.++.-.++.|-+.+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1 1122345666665666666666544443
No 94
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.83 E-value=2e-06 Score=86.35 Aligned_cols=59 Identities=8% Similarity=0.152 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012126 203 SYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDML 263 (470)
Q Consensus 203 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 263 (470)
.+..+..+|-+.|+.++|..+|+++.+..+. |..+.|.+...|... ++++|++++.+.+
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 4444445555555555555555555544422 444444454444444 5555555444443
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=4e-05 Score=70.75 Aligned_cols=362 Identities=14% Similarity=0.074 Sum_probs=201.2
Q ss_pred HHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCc
Q 012126 67 KLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLP 146 (470)
Q Consensus 67 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 146 (470)
....+.||++.|+..|..+...+ +++...|..-..+++..|+|++|.+=-.+.++.. |.=+..|.....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccH
Confidence 45567899999999998887665 4577788888888999999988877666555543 33456788888888888999
Q ss_pred hhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHH------HHHHHCC---CCCCHHHHHHHHHHHHhc---
Q 012126 147 DRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLF------KSAHKHG---VLPNTKSYNIMMRAFCFN--- 214 (470)
Q Consensus 147 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~------~~~~~~~---~~~~~~~~~~li~~~~~~--- 214 (470)
++|+..|.+-++ ..|+......=+....... ..+.+.| ..+.... .......|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~--~d~~n~~L~~gl~~a~~~~---~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 87 EEAILAYSEGLE--KDPSNKQLKTGLAQAYLED---YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred HHHHHHHHHHhh--cCCchHHHHHhHHHhhhHH---HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHh
Confidence 999999988776 3455443322221111000 0000000 0000000 000011111111111100
Q ss_pred -------CChhHHHHHHHH-----HHHC-------CCCC----------------------CHHHHHHHHHHHHHcCChH
Q 012126 215 -------GDISIAYTLFNK-----MFER-------GVMP----------------------DVESYRILMQGLCRKSQVN 253 (470)
Q Consensus 215 -------g~~~~a~~~~~~-----m~~~-------~~~p----------------------~~~~~~~ll~~~~~~~~~~ 253 (470)
..+..+...+.. +... +..| -..-...+.++..+..+++
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 001111111100 0000 0000 0112344566666677777
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhcCCHhHHH
Q 012126 254 RAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNT-------VVLGFCREGRAIDAC 326 (470)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-------li~~~~~~~~~~~a~ 326 (470)
.+++-+....+.. -+..-++....+|...|.+..+...-....+.|.. ...-|+. +..+|.+.++++.++
T Consensus 242 ~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 242 TAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 7777777766654 25555555556666666666555555544444321 1112222 223445556666666
Q ss_pred HHHHhchhCCCCCCHHHH-------------------------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 012126 327 KVLEDMPSNGCLPNLVSY-------------------------RTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHA 381 (470)
Q Consensus 327 ~~~~~m~~~~~~p~~~~~-------------------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 381 (470)
..|.+....-..|+..+= ..-...+.+.|++..|...|.++++.. +-|...|..
T Consensus 319 ~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsN 397 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSN 397 (539)
T ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHH
Confidence 666665443222222110 011234566788888888888888875 557778888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcc
Q 012126 382 LIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVE 441 (470)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 441 (470)
..-+|.+.|.+..|+.=.+..++.+ ++....|.-=..++....++++|.+.|.+.++.+
T Consensus 398 RAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 398 RAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888888888888877777753 1233355555556666778888888888887654
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=6.6e-06 Score=79.36 Aligned_cols=315 Identities=13% Similarity=0.132 Sum_probs=180.5
Q ss_pred CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCC--------CCCCHHHHHHHHHHHHHc
Q 012126 72 QSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEH--------YPVTPSLFTYLIKIYAES 143 (470)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~ 143 (470)
.|+-+.|.+-.+.+. +...|..+.+.|.+.++++.|.-.+..|.... ...+.+.-....-.....
T Consensus 741 iG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieL 813 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIEL 813 (1416)
T ss_pred eccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHH
Confidence 455555544444332 45678888888888888887776666553321 011112222333344567
Q ss_pred CCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 012126 144 NLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTL 223 (470)
Q Consensus 144 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 223 (470)
|..++|+.+|++-... -++..+++..|.+++|.++-+.--+.. =..||.....-+-..++++.|++.
T Consensus 814 gMlEeA~~lYr~ckR~----------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRY----------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred hhHHHHHHHHHHHHHH----------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHH
Confidence 7888888888776552 245566667777888877765433322 224555555666667778888777
Q ss_pred HHHH----------HHCC---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 012126 224 FNKM----------FERG---------VMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRK 284 (470)
Q Consensus 224 ~~~m----------~~~~---------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 284 (470)
|++. .... -.-|...|.....-.-..|+.+.|+.+|....+ |-++++..|-.
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQ 951 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeec
Confidence 7653 1111 011334444444555556666777766665443 33455556667
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC---------
Q 012126 285 KKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQG--------- 355 (470)
Q Consensus 285 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--------- 355 (470)
|+.++|-++-++- -|......+.+.|-..|++.+|..+|.+... |...|+.|-..+
T Consensus 952 Gk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nla 1016 (1416)
T KOG3617|consen 952 GKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLA 1016 (1416)
T ss_pred cCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHH
Confidence 7777776665542 2566666788888888888888888876542 222333322222
Q ss_pred ------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--------HHHHC--CCCCCHHHHHHHHH
Q 012126 356 ------MFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLE--------ELLKA--GEAPHEDTWVMIVP 419 (470)
Q Consensus 356 ------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~--------~~~~~--~~~p~~~~~~~l~~ 419 (470)
+.-.|-.+|++. |. -+..-+..|-+.|.+.+|+++-- +++.. ....|+...+.-..
T Consensus 1017 l~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rcad 1088 (1416)
T KOG3617|consen 1017 LMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCAD 1088 (1416)
T ss_pred hhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 222233333322 21 12233455778888888877632 12222 23356667777777
Q ss_pred HHHcCCcHHHHHHHHHHHH
Q 012126 420 QICAGEEMEKLGEVLNEIV 438 (470)
Q Consensus 420 ~~~~~g~~~~a~~~~~~m~ 438 (470)
.++...++++|..++-...
T Consensus 1089 FF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1089 FFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 7888888888887765543
No 97
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.74 E-value=0.00019 Score=66.45 Aligned_cols=381 Identities=10% Similarity=0.123 Sum_probs=205.9
Q ss_pred cCCCCCCCCChHHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHH
Q 012126 52 ISNSKSPIGSPCRVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPS 131 (470)
Q Consensus 52 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 131 (470)
+..++.+..+-..+.+-+..+ ..+++.+.++.+... ++.++..|..-|+...+.++|+..+.+|.+....- .+..
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlD 87 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLD 87 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHh
Confidence 334555555555555554444 778888888888644 46677788888888888888888888888887664 4566
Q ss_pred HHHHHHHHHHH-cCCchhH----HHHHHHHH-hCCCccCH-HHHHHHHHHHH--------hcCCChhhHHHHHHHHHHCC
Q 012126 132 LFTYLIKIYAE-SNLPDRA----LKTFRSML-EFNCKPLP-KQLNRILELLV--------THRNYLRPAFDLFKSAHKHG 196 (470)
Q Consensus 132 ~~~~li~~~~~-~g~~~~A----~~~~~~~~-~~~~~p~~-~~~~~ll~~~~--------~~~~~~~~a~~~~~~~~~~~ 196 (470)
.|..-++.--+ .|+...+ .+.|+-.. +.|+.+-. ..|+..+..+- ....+.+.+.++++++....
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 77766654433 2333332 23333322 34444432 23444333321 11224666777888777532
Q ss_pred CCC------CHHHHHHHHHHH-------HhcCChhHHHHHHHHHHH--CCCCCCHHH---------------HHHHHHH-
Q 012126 197 VLP------NTKSYNIMMRAF-------CFNGDISIAYTLFNKMFE--RGVMPDVES---------------YRILMQG- 245 (470)
Q Consensus 197 ~~~------~~~~~~~li~~~-------~~~g~~~~a~~~~~~m~~--~~~~p~~~~---------------~~~ll~~- 245 (470)
+.- |-..|..=|+.. -+...+..|.++++++.. +|......+ |-.+|.-
T Consensus 168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 211 112221111111 122345566666665532 121111110 2111111
Q ss_pred ------------------------------------------------HHHcCC-------hHHHHHHHHHHHhCCCCCC
Q 012126 246 ------------------------------------------------LCRKSQ-------VNRAVDLLEDMLNKGFVPD 270 (470)
Q Consensus 246 ------------------------------------------------~~~~~~-------~~~a~~~~~~~~~~~~~~~ 270 (470)
+...|+ .+++..+++...+.-...+
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~ 327 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN 327 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 001111 1222233332222111112
Q ss_pred HhhHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCC-CHHHHHH
Q 012126 271 TLSYTTLLNSLCRK---KKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLP-NLVSYRT 346 (470)
Q Consensus 271 ~~~~~~ll~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ 346 (470)
..+|..+.+.--.. ...+....+++++...-..--..+|-..++.-.+..-...|..+|.+.++.+..+ ++..+++
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A 407 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAA 407 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHH
Confidence 22222111110001 1233444444444433212223456667777777777888888888888877666 5666777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHcC
Q 012126 347 LVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHE--DTWVMIVPQICAG 424 (470)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~ 424 (470)
++.-+|. ++..-|.++|+.-+++ +..+.......++-+...|+-..|..+|+..+..++.++. ..|..++.--..-
T Consensus 408 ~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~v 485 (656)
T KOG1914|consen 408 LMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNV 485 (656)
T ss_pred HHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhc
Confidence 7776654 6778888888765554 2334445566777777888888888888888877555554 5888888877778
Q ss_pred CcHHHHHHHHHHHHH
Q 012126 425 EEMEKLGEVLNEIVK 439 (470)
Q Consensus 425 g~~~~a~~~~~~m~~ 439 (470)
|+...+.++-+++..
T Consensus 486 GdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 486 GDLNSILKLEKRRFT 500 (656)
T ss_pred ccHHHHHHHHHHHHH
Confidence 888888887776643
No 98
>PF12854 PPR_1: PPR repeat
Probab=98.74 E-value=1.9e-08 Score=57.03 Aligned_cols=32 Identities=44% Similarity=1.093 Sum_probs=16.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhc
Q 012126 301 GCNPDIVHYNTVVLGFCREGRAIDACKVLEDM 332 (470)
Q Consensus 301 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 332 (470)
|+.||..+|++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
No 99
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.73 E-value=4.3e-06 Score=85.04 Aligned_cols=218 Identities=11% Similarity=0.088 Sum_probs=174.3
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-CCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012126 224 FNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNK-GFVP---DTLSYTTLLNSLCRKKKLREAYKLLCRMKV 299 (470)
Q Consensus 224 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 299 (470)
|++.....+ -+...|-..|......++.++|.++.++++.. ++.- -.-.|.++++.-..-|.-+...++|++..+
T Consensus 1447 ferlvrssP-NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSSP-NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcCC-CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 444444432 26677888889999999999999999998753 2211 123577777777777888999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHH
Q 012126 300 KGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFS-PHFSV 378 (470)
Q Consensus 300 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~ 378 (470)
.. -....|..|...|.+.+.+++|.++++.|.+. +......|...+..+.+.++-+.|..+++++++.-.. -....
T Consensus 1526 yc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 YC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred hc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 62 23466889999999999999999999999986 3467788999999999999999999999999875111 13445
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHccccCCc
Q 012126 379 SHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVEIKGDT 446 (470)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 446 (470)
..-.+..-.+.|+.+.+..+|+..+.... .-...|+.+++.-.++|+.+.+..+|+.+...++.|-.
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 66667777899999999999999988643 36789999999999999999999999999998887643
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.73 E-value=0.00012 Score=77.71 Aligned_cols=305 Identities=16% Similarity=0.100 Sum_probs=194.8
Q ss_pred HHHHHccCCchHHHHHHHHHhhCCC------CCC--HHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCH---HHHHH
Q 012126 102 ILKLGRAKYFSLIDDILITLKSEHY------PVT--PSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLP---KQLNR 170 (470)
Q Consensus 102 l~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~ 170 (470)
...+...++++++..++......-- ++. ......+...+...|++++|...+++........+. .....
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 3445667899999988887654310 111 122233445567899999999999987763111121 12223
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC--C-CHHH
Q 012126 171 ILELLVTHRNYLRPAFDLFKSAHKH----GVL-PNTKSYNIMMRAFCFNGDISIAYTLFNKMFER----GVM--P-DVES 238 (470)
Q Consensus 171 ll~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~--p-~~~~ 238 (470)
.+.......|++++|...+++.... |.. ....++..+...+...|+++.|...+++..+. +.. + ....
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 3444455678899999999888742 111 11234556677888999999999998876542 211 1 2334
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCC--CCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHH----
Q 012126 239 YRILMQGLCRKSQVNRAVDLLEDMLNKG--FVP--DTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCN-PDIVHY---- 309 (470)
Q Consensus 239 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~---- 309 (470)
+..+...+...|++++|...+.+..... ..+ ....+..+...+...|+.++|.+.+++....... .....+
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 655 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANA 655 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHH
Confidence 4455667778899999999998876531 111 2334445666778899999999999887542111 011111
Q ss_pred -HHHHHHHHhcCCHhHHHHHHHhchhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHH
Q 012126 310 -NTVVLGFCREGRAIDACKVLEDMPSNGCLPNL---VSYRTLVGGLCDQGMFDVAKKYMQLMISK----GFSPH-FSVSH 380 (470)
Q Consensus 310 -~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~ 380 (470)
...+..+...|+.+.|..++............ ..+..+..++...|+.++|...+++.... |...+ ..+..
T Consensus 656 ~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~ 735 (903)
T PRK04841 656 DKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLI 735 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 11224455689999999998776543211111 12345667788999999999999988753 32222 23556
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCC
Q 012126 381 ALIKGFCNVGKVDEACGVLEELLKAG 406 (470)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (470)
.+..++.+.|+.++|...+.+..+..
T Consensus 736 ~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 736 LLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 66788899999999999999988753
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.72 E-value=8.7e-05 Score=64.76 Aligned_cols=298 Identities=9% Similarity=0.012 Sum_probs=212.7
Q ss_pred ChHHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHH-HHHHHHH
Q 012126 61 SPCRVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSL-FTYLIKI 139 (470)
Q Consensus 61 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~ 139 (470)
.+..++..+...|.+..|+.-|..+...+ +.+-.++-.-...|...|+-..|..=+....+.. |+-.. -..-...
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--pDF~~ARiQRg~v 115 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK--PDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC--ccHHHHHHHhchh
Confidence 34566777888999999999999887543 2233344444566788888888888888777653 44322 2234456
Q ss_pred HHHcCCchhHHHHHHHHHhCCCccCHH--------------HHH--HHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHH
Q 012126 140 YAESNLPDRALKTFRSMLEFNCKPLPK--------------QLN--RILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKS 203 (470)
Q Consensus 140 ~~~~g~~~~A~~~~~~~~~~~~~p~~~--------------~~~--~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 203 (470)
+.+.|.+++|..=|+..++.+ |+.. .++ ..+..++ ..|+...|+.....+++..+. |...
T Consensus 116 llK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~-~~GD~~~ai~~i~~llEi~~W-da~l 191 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSAS-GSGDCQNAIEMITHLLEIQPW-DASL 191 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHh-cCCchhhHHHHHHHHHhcCcc-hhHH
Confidence 789999999999999998754 3211 111 1122222 567799999999999987653 8888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhh----HHHH--
Q 012126 204 YNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLS----YTTL-- 277 (470)
Q Consensus 204 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l-- 277 (470)
+..-..+|...|++..|+.=++...+..-. +..++--+-..+...|+.+.++...++.++.+ ||... |..|
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHH
Confidence 888899999999999999887776655433 66677778888899999999999999998764 44322 2111
Q ss_pred -------HHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCC-HHHHHH
Q 012126 278 -------LNSLCRKKKLREAYKLLCRMKVKGCNPDI---VHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPN-LVSYRT 346 (470)
Q Consensus 278 -------l~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ 346 (470)
+......+++.++.+..+...+....... ..+..+..++...|++.+|++.-.+..+. .|| +.++.-
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~d 346 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHH
Confidence 12234467777788777777766322112 23455667788889999999999998874 455 778888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 012126 347 LVGGLCDQGMFDVAKKYMQLMISKG 371 (470)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~~~~~~ 371 (470)
-..+|.-..+++.|+.=|+...+.+
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 8889998999999999999988753
No 102
>PLN02789 farnesyltranstransferase
Probab=98.72 E-value=3.2e-05 Score=69.91 Aligned_cols=142 Identities=7% Similarity=0.005 Sum_probs=77.4
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 012126 171 ILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNG-DISIAYTLFNKMFERGVMPDVESYRILMQGLCRK 249 (470)
Q Consensus 171 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 249 (470)
.+.++....+..++|+.+..++++.... +..+|+.-..++...| ++++++..++++.+.+.+ +..+|+.-...+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHc
Confidence 3444444555566666666666665432 4445555545555555 456666666666665444 444555444444444
Q ss_pred CCh--HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012126 250 SQV--NRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGF 316 (470)
Q Consensus 250 ~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 316 (470)
|.. ++++.+++++.+...+ |..+|+...-++...|+++++++.++++++.+.. +...|+.....+
T Consensus 120 ~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl 186 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVI 186 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHH
Confidence 442 4556666666655544 5566666666666666666666666666655322 344444444333
No 103
>PLN02789 farnesyltranstransferase
Probab=98.72 E-value=1.5e-05 Score=72.07 Aligned_cols=147 Identities=8% Similarity=0.038 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CC----hHHH
Q 012126 183 RPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRK---SQ----VNRA 255 (470)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---~~----~~~a 255 (470)
++++.+++++.+...+ |..+|+...-++...|+++++++.++++++.++. +...|+.....+.+. |. .++.
T Consensus 125 ~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 3444455455544332 4555555555555555555555555555555443 444444443333332 11 1344
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----------
Q 012126 256 VDLLEDMLNKGFVPDTLSYTTLLNSLCR----KKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREG----------- 320 (470)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----------- 320 (470)
++...+++...+. |...|+.+...+.. .+...+|.+.+.+....+ ..+......|+..|+...
T Consensus 203 l~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~ 280 (320)
T PLN02789 203 LKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVD 280 (320)
T ss_pred HHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhh
Confidence 4444444444333 45555555555544 123344555555544432 223444555555554421
Q ss_pred -------CHhHHHHHHHhch
Q 012126 321 -------RAIDACKVLEDMP 333 (470)
Q Consensus 321 -------~~~~a~~~~~~m~ 333 (470)
..++|.+++..+.
T Consensus 281 ~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 281 TLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred ccccccccHHHHHHHHHHHH
Confidence 2356777777773
No 104
>PF12854 PPR_1: PPR repeat
Probab=98.71 E-value=2.3e-08 Score=56.72 Aligned_cols=32 Identities=31% Similarity=0.794 Sum_probs=19.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 012126 196 GVLPNTKSYNIMMRAFCFNGDISIAYTLFNKM 227 (470)
Q Consensus 196 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 227 (470)
|+.||..+|++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666555
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=9.6e-05 Score=70.85 Aligned_cols=215 Identities=16% Similarity=0.131 Sum_probs=157.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 012126 205 NIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRK 284 (470)
Q Consensus 205 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 284 (470)
..+...+...|-...|..+|++. ..|.-++.+|+..|+..+|..+..+..+. +||...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 45567777888888888888765 34566778888888888888888777763 66888888888877777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 012126 285 KKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYM 364 (470)
Q Consensus 285 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 364 (470)
.-+++|.++++..... .-..+.....+.+++.++.+.|+.-.+.+ +....+|-.+..+..+.+++..|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 7788888888775433 11112222334688888888888766542 234567777777777888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 012126 365 QLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 365 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 440 (470)
....... +-+...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+-...+-|.+++|++.+.++.+.
T Consensus 543 ~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 543 HRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 8877642 3345688888888888888888888888888876 346667777777778888888888888888654
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.66 E-value=2.4e-05 Score=78.91 Aligned_cols=240 Identities=13% Similarity=0.137 Sum_probs=149.9
Q ss_pred CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHH
Q 012126 127 PVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNI 206 (470)
Q Consensus 127 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 206 (470)
+.+...+..|+..|...+++++|.++.+...+ ..|+...+..++..++...+....+ ... .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~----------------~lv-~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDS----------------NLL-N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhh----------------hhh-h
Confidence 34566777788888888888888888886666 3466665555555554444432211 111 5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 012126 207 MMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKK 286 (470)
Q Consensus 207 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 286 (470)
++.......++..+..+...|.+.+- +...+..+..+|.+.|+.+++..+|+++++.... |..+.|.+...|+.. +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~--~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGE--NKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhh--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-h
Confidence 55555566666566666666666532 4557888999999999999999999999998755 888999999999988 9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 012126 287 LREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQL 366 (470)
Q Consensus 287 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 366 (470)
+++|..++.+.... |...+++..+.++|.++.+.. |+... .-..+.+.
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d---------------~f~~i~~k 212 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFD---------------FFLRIERK 212 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccch---------------HHHHHHHH
Confidence 99999988887654 555667777777777777642 22211 11112222
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012126 367 MISK-GFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQIC 422 (470)
Q Consensus 367 ~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 422 (470)
+... |..--..++-.+-..|-..++++++..+++..++.... |.....-++.+|.
T Consensus 213 i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 2211 11222334444455555555666666666666554322 3344444454444
No 107
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=0.00014 Score=72.22 Aligned_cols=250 Identities=14% Similarity=0.131 Sum_probs=126.6
Q ss_pred HHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 012126 139 IYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDIS 218 (470)
Q Consensus 139 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 218 (470)
.....+-+++|..+|++.- .+....+.++... +.++.|.+.-++.. ....|..+.++-...|.+.
T Consensus 1057 iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~i----~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1057 IAIENQLYEEAFAIFKKFD-----MNVSAIQVLIENI----GSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHHh----hhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchH
Confidence 3344455566666665432 1233333333322 23444444443332 3456777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012126 219 IAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMK 298 (470)
Q Consensus 219 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 298 (470)
+|++-|-+. . |...|..++....+.|.+++-.+++....+..-.|. .=+.||-+|++.+++.+.++++.
T Consensus 1122 dAieSyika--d----Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~--- 1190 (1666)
T KOG0985|consen 1122 DAIESYIKA--D----DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIA--- 1190 (1666)
T ss_pred HHHHHHHhc--C----CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhc---
Confidence 776655322 1 556677777777777777777776665555543333 33456677777776665444331
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 012126 299 VKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSV 378 (470)
Q Consensus 299 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 378 (470)
.|+......+.+-|...|.++.|.-+|... ..|..|...+...|++..|...-++. .+..+
T Consensus 1191 ----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~kt 1251 (1666)
T KOG0985|consen 1191 ----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKT 1251 (1666)
T ss_pred ----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhH
Confidence 245555555555555666666555555432 23444555555555555554433322 12344
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 012126 379 SHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIV 438 (470)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 438 (470)
|--+-.+|...+.+.-| +|-..++.....-..-|+.-|...|-+++.+.+++..+
T Consensus 1252 WK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1252 WKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 44444444444333222 22222233334444455555555555555555554443
No 108
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=4.7e-05 Score=64.09 Aligned_cols=247 Identities=13% Similarity=0.109 Sum_probs=123.1
Q ss_pred HHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChh-
Q 012126 105 LGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLR- 183 (470)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~- 183 (470)
+.-.|+|..++..-....... .++..-..+-++|...|++..... ++.... .|.... -.++..+....+..+
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqA-vr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQA-VRLLAEYLELESNKKS 90 (299)
T ss_pred HHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHH-HHHHHHHhhCcchhHH
Confidence 344455555554444333221 234444445566666665543322 222211 111111 112222222222222
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012126 184 PAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDML 263 (470)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 263 (470)
...++.+.+.......+......-...|++.|++++|++...... +......=...+.+..+.+-|.+.+++|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333334333333233333344456777777777777765511 33344344455566677777777777776
Q ss_pred hCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCC
Q 012126 264 NKGFVPDTLSYTTLLNSLCR----KKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLP 339 (470)
Q Consensus 264 ~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 339 (470)
+.. +..+.+.|..++.+ .+.+..|.-+|++|.++ .+|+..+.+....++...|++++|..++++...+...
T Consensus 165 ~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~- 239 (299)
T KOG3081|consen 165 QID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK- 239 (299)
T ss_pred ccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-
Confidence 642 44555555555543 34566777777777654 3566667777777777777777777777776665322
Q ss_pred CHHHHHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 012126 340 NLVSYRTLVGGLCDQGMF-DVAKKYMQLMIS 369 (470)
Q Consensus 340 ~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~ 369 (470)
+..+...++-.-...|.. +.-.+.+..+..
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 344444444333333333 333444444444
No 109
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.63 E-value=0.00043 Score=66.94 Aligned_cols=126 Identities=15% Similarity=0.032 Sum_probs=99.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhc
Q 012126 276 TLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPN-LVSYRTLVGGLCDQ 354 (470)
Q Consensus 276 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~ 354 (470)
.....+.+.+..++|...+.+..+. ..-....|......+...|..++|.+.|...... .|+ .....++...+.+.
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHh
Confidence 3445566667777776666665544 2334566777777788899999999999988774 454 56788899999999
Q ss_pred CChHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 012126 355 GMFDVAKK--YMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKA 405 (470)
Q Consensus 355 g~~~~a~~--~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (470)
|+..-|.. ++.++.+.+ +.+...|..+...+.+.|+.++|.+.|+...+.
T Consensus 732 G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99888888 999999976 557889999999999999999999999988764
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.60 E-value=9.8e-06 Score=70.85 Aligned_cols=186 Identities=11% Similarity=0.005 Sum_probs=125.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHH
Q 012126 235 DVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFV-P-DTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDI--VHYN 310 (470)
Q Consensus 235 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~ 310 (470)
....+..+...+...|++++|...|+++...... | ...++..+..++.+.|++++|...++++.+..-.... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 5667777888888999999999999998876432 1 1245677788888999999999999998876211111 1344
Q ss_pred HHHHHHHhc--------CCHhHHHHHHHhchhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 012126 311 TVVLGFCRE--------GRAIDACKVLEDMPSNGCLPNLV-SYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHA 381 (470)
Q Consensus 311 ~li~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 381 (470)
.+..++.+. |++++|.+.++.+.+. .|+.. .+..+... .. .. ... ......
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~------~~~--------~~~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LR------NRL--------AGKELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HH------HHH--------HHHHHH
Confidence 445555544 6778888888887765 24332 22211111 00 00 000 011124
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 012126 382 LIKGFCNVGKVDEACGVLEELLKAGE--APHEDTWVMIVPQICAGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 440 (470)
+...|.+.|++++|...+++.++... +.....+..+..++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55678899999999999999987531 123568889999999999999999999888754
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.60 E-value=1.2e-05 Score=70.28 Aligned_cols=187 Identities=11% Similarity=0.015 Sum_probs=122.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH--hhH
Q 012126 199 PNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVM-P-DVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDT--LSY 274 (470)
Q Consensus 199 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 274 (470)
.....+..+...+...|+++.|...|+++...... | ...++..+..++...|++++|+..++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35667777778888889999999888888775432 1 1245667778888889999999999888876443111 134
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHH
Q 012126 275 TTLLNSLCRK--------KKLREAYKLLCRMKVKGCNPDI-VHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYR 345 (470)
Q Consensus 275 ~~ll~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 345 (470)
..+..++... |+.++|.+.++.+... .|+. ..+..+... .. ..... .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~~~~--------------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LRNRL--------------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HHHHH--------------HHHHH
Confidence 4444455543 6788899999888776 3443 222222111 00 00000 00112
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 012126 346 TLVGGLCDQGMFDVAKKYMQLMISKGF--SPHFSVSHALIKGFCNVGKVDEACGVLEELLKA 405 (470)
Q Consensus 346 ~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (470)
.+...+.+.|++++|...++...+..- +.....+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455667888999999999988887521 223567788888899999999999988887654
No 112
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.60 E-value=5.1e-05 Score=72.59 Aligned_cols=138 Identities=12% Similarity=0.151 Sum_probs=84.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 012126 207 MMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKK 286 (470)
Q Consensus 207 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 286 (470)
.+.+....+++.+|+.+++.+.+... -.--|..+...|...|+++.|.++|-+. ..++-.|.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence 34455566777777777777776643 2334566667777778888887777542 134556777888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 012126 287 LREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQL 366 (470)
Q Consensus 287 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 366 (470)
++.|.++-++.... ......|-+-..-+-+.|++.+|.++|-.+.+ |+. .|..|-+.|..+..+++.++
T Consensus 807 w~da~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHH
Confidence 88777776655422 33445555555556667777777766655432 332 35556666666655555543
No 113
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=0.00068 Score=63.67 Aligned_cols=163 Identities=18% Similarity=0.116 Sum_probs=105.9
Q ss_pred HhhHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH--------hchhCCCCCC
Q 012126 271 TLSYTTLLNSLCRK--KKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLE--------DMPSNGCLPN 340 (470)
Q Consensus 271 ~~~~~~ll~~~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--------~m~~~~~~p~ 340 (470)
...+.+++..+.+. .....+.+++...-+..-.-...+.-.++......|+++.|++++. .+.+.+..|-
T Consensus 339 ~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~ 418 (652)
T KOG2376|consen 339 ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG 418 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh
Confidence 34455555544332 2466777777777665322234556667778889999999999999 5555555554
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 012126 341 LVSYRTLVGGLCDQGMFDVAKKYMQLMISK--GFSPHFS----VSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTW 414 (470)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 414 (470)
+...++..+.+.++.+.|..++.+.++. .-.+... ++.-....-.+.|+.++|..+++++.+.+ .+|..+.
T Consensus 419 --~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l 495 (652)
T KOG2376|consen 419 --TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLL 495 (652)
T ss_pred --HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHH
Confidence 4455666677777777777777776642 1112222 23333333456799999999999998854 4688899
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHH
Q 012126 415 VMIVPQICAGEEMEKLGEVLNEI 437 (470)
Q Consensus 415 ~~l~~~~~~~g~~~~a~~~~~~m 437 (470)
..++.+|++. +.+.|..+-+.+
T Consensus 496 ~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 496 VQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999988876 456666555443
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.52 E-value=3.6e-05 Score=64.69 Aligned_cols=123 Identities=11% Similarity=0.175 Sum_probs=93.9
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCC--hHHHH
Q 012126 180 NYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGL-CRKSQ--VNRAV 256 (470)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~--~~~a~ 256 (470)
++.+++...+++..+... .|...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 345666667777666554 37888888888888999999999999888887644 677777777764 56676 48888
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 012126 257 DLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDI 306 (470)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 306 (470)
+++++..+.+.. +..++..+...+.+.|++++|...|+++.+.. +|+.
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~ 178 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRV 178 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCc
Confidence 889888887665 67778888888888888999988888887763 3444
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.52 E-value=3.7e-05 Score=76.72 Aligned_cols=148 Identities=16% Similarity=0.126 Sum_probs=110.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHH
Q 012126 126 YPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYN 205 (470)
Q Consensus 126 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 205 (470)
++.++..+..|..+....|..++|+.+++...+ ..|+.......+.......+.+++|....++....... +....+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 456677888888888888888888888888877 56777777766666666777788888888888877643 666777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 012126 206 IMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLL 278 (470)
Q Consensus 206 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 278 (470)
.+..++.+.|++++|..+|++....+.. +..++..+..++...|+.++|...|++..+.. .+....|+..+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 7778888888888888888888874432 57778888888888888888888888877653 22444544433
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.51 E-value=2.8e-05 Score=65.34 Aligned_cols=119 Identities=8% Similarity=0.004 Sum_probs=69.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHH-HhcCC--hHHH
Q 012126 284 KKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGL-CDQGM--FDVA 360 (470)
Q Consensus 284 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~a 360 (470)
.++.+++...++...+.. +.+...|..+...|...|++++|...|++..+.. +-+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455556665565555542 3455666666666666666666666666666543 12445555555543 45455 3666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 012126 361 KKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKA 405 (470)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (470)
.+++++..+.+ +-+...+..+...+...|++++|...|+++++.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666653 234556666666666666666666666666654
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.50 E-value=3.3e-05 Score=64.95 Aligned_cols=152 Identities=14% Similarity=0.066 Sum_probs=97.2
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 012126 178 HRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVD 257 (470)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 257 (470)
..|+-+....+..+..... .-|....+..++...+.|++..|...|++..... ++|..+|+.+.-+|.+.|++++|..
T Consensus 78 ~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ 155 (257)
T COG5010 78 LRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARR 155 (257)
T ss_pred hcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHH
Confidence 3333444444444433221 1255556667777777777777777777776553 4477777777777777777777777
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhch
Q 012126 258 LLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMP 333 (470)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 333 (470)
-|.+..+.... +....+.+.-.|.-.|+.+.|..++......+ .-|..+-..+.......|++++|.++...-.
T Consensus 156 ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 156 AYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 77777765433 45566666666777777777777777766653 2255555666666777777777776665433
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=9.3e-05 Score=62.36 Aligned_cols=171 Identities=12% Similarity=0.082 Sum_probs=89.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012126 223 LFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGC 302 (470)
Q Consensus 223 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 302 (470)
+.+.+.......+......-...|+..|++++|++..... . +......=+..+.+..+.+-|...+++|.+-.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id- 167 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQID- 167 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 3444444433323333333344566666777776665541 1 22222223344555666666777676666542
Q ss_pred CCCHHHHHHHHHHHHh----cCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 012126 303 NPDIVHYNTVVLGFCR----EGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSV 378 (470)
Q Consensus 303 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 378 (470)
+..+.+.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++...+.. .++.+
T Consensus 168 --ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpet 243 (299)
T KOG3081|consen 168 --EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPET 243 (299)
T ss_pred --hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHH
Confidence 44555555555443 34466666677766654 456666666666666666777777777766666532 23334
Q ss_pred HHHHHHHHHccCCH-HHHHHHHHHHHH
Q 012126 379 SHALIKGFCNVGKV-DEACGVLEELLK 404 (470)
Q Consensus 379 ~~~li~~~~~~g~~-~~a~~~~~~~~~ 404 (470)
...++.+-...|.. +-..+.+.++..
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 43333333333332 333444444444
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.43 E-value=0.00012 Score=61.70 Aligned_cols=123 Identities=14% Similarity=0.116 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012126 309 YNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCN 388 (470)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 388 (470)
.+..+....+.|++.+|...+.+.... -++|...|+.+.-+|.+.|+++.|..-|.+..+.- .-+...++.+...|.-
T Consensus 103 l~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L 180 (257)
T COG5010 103 LAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLL 180 (257)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHH
Confidence 333444444455555555555444432 13344445544445555555555555554444431 1223344444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHH
Q 012126 389 VGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVL 434 (470)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 434 (470)
.|+.+.|..++......+.. |..+-..+..+....|++++|..+.
T Consensus 181 ~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 181 RGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 45555555555444443211 3334444444444455555444443
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=0.00065 Score=62.48 Aligned_cols=182 Identities=16% Similarity=0.103 Sum_probs=109.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 012126 199 PNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLL 278 (470)
Q Consensus 199 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 278 (470)
|+...+...+.+......-..+..++.+..+. .-...-|.. .-.+...|++++|+..+..+...-+. |........
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~-A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~ 347 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGR-ALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAG 347 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHH-HHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 34445555555444333333333333322221 112223332 33345667777777777777765433 566666667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCh
Q 012126 279 NSLCRKKKLREAYKLLCRMKVKGCNPD-IVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMF 357 (470)
Q Consensus 279 ~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 357 (470)
+.+.+.++.++|.+.++.+... .|+ ....-.+.++|.+.|++.+|+.+++..... .+-|...|..|.++|...|+.
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 348 DILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCch
Confidence 7777777788887777777766 444 445555667777777777777777776654 344677777777777777776
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 012126 358 DVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKA 405 (470)
Q Consensus 358 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (470)
.++.....+ .|...|+++.|...+....+.
T Consensus 425 ~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 425 AEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 666554433 345567777777777666554
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.41 E-value=3.9e-05 Score=76.55 Aligned_cols=147 Identities=7% Similarity=-0.023 Sum_probs=127.6
Q ss_pred CCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHH
Q 012126 90 NFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLN 169 (470)
Q Consensus 90 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 169 (470)
.|+.+...+..|.....+.|++++|..+++.+.+.. |.+......+...+.+.+++++|+..+++... ..|+.....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~ 157 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREI 157 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHH
Confidence 356778999999999999999999999999999886 77788899999999999999999999999998 469999999
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 012126 170 RILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRI 241 (470)
Q Consensus 170 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 241 (470)
.++..+....|.+++|..+|+++...+. -+..++..+...+.+.|+.++|...|++..+.. .+....|+.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~ 227 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTR 227 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHH
Confidence 9999999999999999999999998543 258899999999999999999999999987752 223344443
No 122
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.39 E-value=0.00021 Score=70.95 Aligned_cols=131 Identities=17% Similarity=0.020 Sum_probs=85.8
Q ss_pred ChHHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 012126 61 SPCRVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIY 140 (470)
Q Consensus 61 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 140 (470)
+.....+.+....+++.|..+.-...+......-...|....-.+.+.+++..+..-|+...+.. |.|...|..+..+|
T Consensus 528 aaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY 606 (1238)
T KOG1127|consen 528 AAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAY 606 (1238)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHH
Confidence 33455566677777777777643333222111112223334445666777778877777777665 56778888899999
Q ss_pred HHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 012126 141 AESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHK 194 (470)
Q Consensus 141 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 194 (470)
..+|.+..|+++|.+... +.|+...-.......-...|.+.++...+.....
T Consensus 607 ~~sGry~~AlKvF~kAs~--LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 607 PESGRYSHALKVFTKASL--LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HhcCceehHHHhhhhhHh--cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999999999988877 4566655555555555566778888888877653
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.39 E-value=3.9e-05 Score=60.91 Aligned_cols=95 Identities=12% Similarity=-0.122 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 012126 204 YNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCR 283 (470)
Q Consensus 204 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 283 (470)
+..+...+...|++++|...|+......+. +...|..+..++...|++++|+..|+.....+.. +..++..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 444566666777777777777777665433 6666677777777777777777777777765443 56666667777777
Q ss_pred cCCHHHHHHHHHHHHHc
Q 012126 284 KKKLREAYKLLCRMKVK 300 (470)
Q Consensus 284 ~~~~~~a~~~~~~m~~~ 300 (470)
.|+.++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777776665
No 124
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.39 E-value=3e-05 Score=74.14 Aligned_cols=221 Identities=15% Similarity=0.130 Sum_probs=165.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHH
Q 012126 126 YPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYN 205 (470)
Q Consensus 126 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 205 (470)
+||--..-..+.+.+.+.|-...|+.+|+++.. |..++..+. ..|+..+|..+..+..+. +||...|.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~-~lg~~~kaeei~~q~lek--~~d~~lyc 461 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYL-LLGQHGKAEEINRQELEK--DPDPRLYC 461 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHH-HhcccchHHHHHHHHhcC--CCcchhHH
Confidence 344555566788889999999999999998755 444444444 444678888888887773 47888888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 012126 206 IMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKK 285 (470)
Q Consensus 206 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 285 (470)
.+.+.....--+++|.++.+..-.+ .-..+.....+.++++++.+.|+.-.+.+.- -..+|-.+-.+..+.+
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLE 533 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHh
Confidence 8888877777788888888765433 1112222233478899999999887776533 5567777788888899
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 012126 286 KLREAYKLLCRMKVKGCNP-DIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYM 364 (470)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 364 (470)
+++.|.+.|...... .| +...||.+-.+|.+.++-.+|...+.+..+.+. -+...|...+-...+.|.+++|.+.+
T Consensus 534 k~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred hhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHH
Confidence 999999999988765 34 467899999999999999999999999988763 34455555666678889999999999
Q ss_pred HHHHH
Q 012126 365 QLMIS 369 (470)
Q Consensus 365 ~~~~~ 369 (470)
..+.+
T Consensus 611 ~rll~ 615 (777)
T KOG1128|consen 611 HRLLD 615 (777)
T ss_pred HHHHH
Confidence 88775
No 125
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=0.00075 Score=65.82 Aligned_cols=60 Identities=10% Similarity=0.065 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHccccCCceeee
Q 012126 391 KVDEACGVLEELLKAGEA----PHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVEIKGDTRIVE 450 (470)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 450 (470)
+..+.+.-...|.+.-+- +-...|..||..+....++..|-+.+++|.++-...|..++-
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~~s~~v 1369 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVDLSTFV 1369 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccchhccc
Confidence 333334444445444332 334588999999999999999999999999876666655553
No 126
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.38 E-value=4.5e-05 Score=60.58 Aligned_cols=95 Identities=11% Similarity=-0.054 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012126 309 YNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCN 388 (470)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 388 (470)
+......+.+.|++++|...|+...... +.+...|..+..++...|++++|...|+...+.. +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344555566666666666666665542 2245555666666666666666666666666542 3345566666666666
Q ss_pred cCCHHHHHHHHHHHHHC
Q 012126 389 VGKVDEACGVLEELLKA 405 (470)
Q Consensus 389 ~g~~~~a~~~~~~~~~~ 405 (470)
.|++++|...|+..++.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666653
No 127
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.001 Score=66.38 Aligned_cols=326 Identities=15% Similarity=0.200 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHccCCchHHHH-----------HHHHHhhCCCC--CCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCc
Q 012126 96 STYLILILKLGRAKYFSLIDD-----------ILITLKSEHYP--VTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCK 162 (470)
Q Consensus 96 ~~~~~ll~~~~~~~~~~~a~~-----------~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 162 (470)
..|....+.+.+..+.+.-.+ +++.....+++ .+++.....+.++...+-+.+-++++++++-.+..
T Consensus 937 SlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~ 1016 (1666)
T KOG0985|consen 937 SLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSV 1016 (1666)
T ss_pred hHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcc
Confidence 344445555555555433332 33444444332 35667777788888888888888888887642211
Q ss_pred --cCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCC-----------------------CCHHHHHHHHHHHHhcCCh
Q 012126 163 --PLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVL-----------------------PNTKSYNIMMRAFCFNGDI 217 (470)
Q Consensus 163 --p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~ 217 (470)
-+...-|.++-... +-+-..+.+..+++-..+.. .+....+.|+. ..+.+
T Consensus 1017 Fse~~nLQnLLiLtAi--kad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie---~i~~l 1091 (1666)
T KOG0985|consen 1017 FSENRNLQNLLILTAI--KADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIE---NIGSL 1091 (1666)
T ss_pred cccchhhhhhHHHHHh--hcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHH---HhhhH
Confidence 11111222222221 11223344444444332211 12223333332 12334
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 012126 218 SIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRM 297 (470)
Q Consensus 218 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 297 (470)
+.|.+.-++.. ....|+.+..+-.+.|...+|++-|-+. -|+..|..+++...+.|.+++-.+.+...
T Consensus 1092 dRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1092 DRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred HHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 44433332221 3466777777777777777777666432 15667777778888888888877777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 012126 298 KVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFS 377 (470)
Q Consensus 298 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 377 (470)
.+..-.|... +.||-+|++.++..+..+++. .||......+.+-|...|.++.|.-+|... .
T Consensus 1160 Rkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------S 1221 (1666)
T KOG0985|consen 1160 RKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------S 1221 (1666)
T ss_pred HHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------h
Confidence 6664444433 467777777777776655542 366666677777777777777777666543 3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHH----------HHHHHHHHccccCCce
Q 012126 378 VSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLG----------EVLNEIVKVEIKGDTR 447 (470)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~----------~~~~~m~~~~~~p~~~ 447 (470)
-|..|...++..|++..|...-++. -+..||..+--+|...+.+.-|- +-++++. +...|.-
T Consensus 1222 N~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli--~~Yq~rG 1293 (1666)
T KOG0985|consen 1222 NFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELI--EYYQDRG 1293 (1666)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHH--HHHHhcC
Confidence 4666777777778887777665443 36778888888888877766553 1223333 4555666
Q ss_pred eeecccchhhHhhHHhh
Q 012126 448 IVEAGIGLEDYLIGKTR 464 (470)
Q Consensus 448 ~~~~~~~~~~~~~~~~~ 464 (470)
.++.+|.+.+.-.|-.+
T Consensus 1294 yFeElIsl~Ea~LGLER 1310 (1666)
T KOG0985|consen 1294 YFEELISLLEAGLGLER 1310 (1666)
T ss_pred cHHHHHHHHHhhhchhH
Confidence 66777777666666554
No 128
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.36 E-value=0.0023 Score=59.62 Aligned_cols=184 Identities=11% Similarity=0.080 Sum_probs=135.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHH
Q 012126 252 VNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNP-DIVHYNTVVLGFCREGRAIDACKVLE 330 (470)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~ 330 (470)
.+.....++++...-..--..+|...++.-.+..-+..|..+|.+..+.+..+ ++.++++++..|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 56666777776654333344678888999999999999999999999987777 7888999998776 578899999999
Q ss_pred hchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--
Q 012126 331 DMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPH--FSVSHALIKGFCNVGKVDEACGVLEELLKAG-- 406 (470)
Q Consensus 331 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-- 406 (470)
--.+. ..-+..--...+.-+...++-..+..+|++.+..++.++ ..+|..+++-=..-|++..+.++-+++...-
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 86554 222334445667777889999999999999999866655 4699999999999999999999988775431
Q ss_pred -CCCCHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 012126 407 -EAPHEDTWVMIVPQICAGEEMEKLGEVLNEI 437 (470)
Q Consensus 407 -~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 437 (470)
..+....-..+++-|.-.+.+..-..-++.+
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 2223334455566666665554433333333
No 129
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=0.0012 Score=61.36 Aligned_cols=329 Identities=13% Similarity=0.077 Sum_probs=206.0
Q ss_pred HHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCH-HHHHHHHHHHHhcCCC
Q 012126 103 LKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLP-KQLNRILELLVTHRNY 181 (470)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~ 181 (470)
.+....|+++.|...|...+... |++...|..-..+|++.|++++|++=-.+-++ +.|+= ..|...-.++. ..|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~-~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALF-GLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHH-hccc
Confidence 34667899999999999998887 66888899999999999999999887666665 44553 34444444443 6677
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH---HHHHHHHHHC---CCCCCHHHHHHHHHHHHHc------
Q 012126 182 LRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIA---YTLFNKMFER---GVMPDVESYRILMQGLCRK------ 249 (470)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a---~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~------ 249 (470)
+++|+.-|.+=++.... |...++.+..++......... -.++..+... ........|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 99999999998876543 667777777776211000000 0011111000 0000111222222221110
Q ss_pred -CChHHHHHHHHHHHh--------CC-------CCC----------------------CHhhHHHHHHHHHhcCCHHHHH
Q 012126 250 -SQVNRAVDLLEDMLN--------KG-------FVP----------------------DTLSYTTLLNSLCRKKKLREAY 291 (470)
Q Consensus 250 -~~~~~a~~~~~~~~~--------~~-------~~~----------------------~~~~~~~ll~~~~~~~~~~~a~ 291 (470)
.+.+...+....+.. .| ..| -..-...+.++..+..+++.|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 001111111111110 00 011 0122456788888899999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHH-------HHHHHHHhcCChHHHHHHH
Q 012126 292 KLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYR-------TLVGGLCDQGMFDVAKKYM 364 (470)
Q Consensus 292 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-------~li~~~~~~g~~~~a~~~~ 364 (470)
+-+....+.. -+..-++....+|...|.+.++...-....+.|-. ...-|+ .+..+|.+.++++.|...|
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 9999988774 35555666677889999888877777776665522 112222 2334566778889999988
Q ss_pred HHHHHCCCCCCHHH-------------------------HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012126 365 QLMISKGFSPHFSV-------------------------SHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVP 419 (470)
Q Consensus 365 ~~~~~~~~~~~~~~-------------------------~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 419 (470)
.+.....-.|+... ...=...+.+.|++..|.+.|.++++.. +-|...|....-
T Consensus 322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAa 400 (539)
T KOG0548|consen 322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAA 400 (539)
T ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHH
Confidence 88765433332111 1112455678899999999999999987 347789999999
Q ss_pred HHHcCCcHHHHHHHHHHHHHc
Q 012126 420 QICAGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 420 ~~~~~g~~~~a~~~~~~m~~~ 440 (470)
+|.+.|.+..|+.-.+..++.
T Consensus 401 c~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 401 CYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhc
Confidence 999999999999888777755
No 130
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.29 E-value=0.00041 Score=66.72 Aligned_cols=138 Identities=15% Similarity=0.233 Sum_probs=96.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 012126 242 LMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGR 321 (470)
Q Consensus 242 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 321 (470)
.+.+......+.+|+.+++.+.+... -..-|..+.+-|+..|+++.|.++|-+.- .++-.|.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 45566677889999999998887643 34567788899999999999999997643 24567889999999
Q ss_pred HhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 012126 322 AIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEE 401 (470)
Q Consensus 322 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 401 (470)
+++|.++-.+... .......|..-..-+-++|++.+|++++-.+- .|+ .-|.+|-+.|..+..+++.++
T Consensus 807 w~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 9999999877643 33455566666666677888877777664331 233 233445555555555555443
No 131
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.28 E-value=0.00067 Score=67.55 Aligned_cols=185 Identities=14% Similarity=0.032 Sum_probs=122.3
Q ss_pred CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHH
Q 012126 72 QSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALK 151 (470)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 151 (470)
..+...|+..|=...+.+ +.-...|..|...|....+...|.+-|+...+.+ +.+........+.|+....++.|..
T Consensus 471 rK~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHH
Confidence 344556666555555443 1234567777787877777888888888877665 4566778888888988888888888
Q ss_pred HHHHHHhCCC-ccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 012126 152 TFRSMLEFNC-KPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFER 230 (470)
Q Consensus 152 ~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 230 (470)
+.-..-+... ..-...|.. ...++-..+....+..-|+...+..+. |...|..++.+|.+.|.+..|.++|.+....
T Consensus 548 I~l~~~qka~a~~~k~nW~~-rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQ-RGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhh-ccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 8433222110 001111222 233333555677788888888876654 8889999999999999999999999887765
Q ss_pred CCCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHh
Q 012126 231 GVMPDVESYRI--LMQGLCRKSQVNRAVDLLEDMLN 264 (470)
Q Consensus 231 ~~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~ 264 (470)
. |+ .+|.. ....-+..|.+.++...+.....
T Consensus 626 r--P~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 626 R--PL-SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred C--cH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3 22 33332 23345677888888888877654
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.27 E-value=7.7e-05 Score=58.73 Aligned_cols=97 Identities=13% Similarity=-0.003 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 012126 202 KSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSL 281 (470)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 281 (470)
.....+...+...|++++|.+.|+.....+.. +...+..+..++...|++++|...++...+.+.. +...+..+..+|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 33444555555666666666666666554322 4555555666666666666666666665554422 444555555566
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 012126 282 CRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 282 ~~~~~~~~a~~~~~~m~~~ 300 (470)
...|+.++|...|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666665554
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.0012 Score=55.55 Aligned_cols=186 Identities=15% Similarity=0.133 Sum_probs=124.6
Q ss_pred CchHHHHHHHHHhhC---C-CCCCH-HHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhh
Q 012126 110 YFSLIDDILITLKSE---H-YPVTP-SLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRP 184 (470)
Q Consensus 110 ~~~~a~~~~~~~~~~---~-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 184 (470)
+.++..+++..+... | ..++. .+|..++-+...+|+.+.|...++.+...- |...-...+-.......|.+++
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhh
Confidence 344555555444322 2 22333 234456666677888888888888877642 5555555555555666677888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012126 185 AFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLN 264 (470)
Q Consensus 185 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 264 (470)
|+++++.+.+.+. .|..++-.=+...-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++++-
T Consensus 105 A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 8888888887763 36666665555566677777888888777776 444888888888888888888888888888877
Q ss_pred CCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHHc
Q 012126 265 KGFVPDTLSYTTLLNSLCRKK---KLREAYKLLCRMKVK 300 (470)
Q Consensus 265 ~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~ 300 (470)
..+. +...|..+.+.+.-.| +.+.+.+.|.+..+.
T Consensus 183 ~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 183 IQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred cCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 6433 5555666666554433 566777778777765
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=0.00099 Score=61.31 Aligned_cols=107 Identities=14% Similarity=0.050 Sum_probs=48.6
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012126 182 LRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLED 261 (470)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 261 (470)
.+.|+..++.+.+.-. -|...+......+.+.|+.++|.+.++++....+. .....-.+..++.+.|++.+|+.+++.
T Consensus 322 ~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~ 399 (484)
T COG4783 322 YDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNR 399 (484)
T ss_pred cchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 4555555555444321 13333334444555555555555555555444211 123333344445555555555555555
Q ss_pred HHhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 012126 262 MLNKGFVPDTLSYTTLLNSLCRKKKLREAY 291 (470)
Q Consensus 262 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 291 (470)
....... |...|..|..+|...|+..++.
T Consensus 400 ~~~~~p~-dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 400 YLFNDPE-DPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HhhcCCC-CchHHHHHHHHHHHhCchHHHH
Confidence 4444322 4445555555555555544443
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.22 E-value=8.2e-05 Score=58.59 Aligned_cols=96 Identities=16% Similarity=0.069 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012126 237 ESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGF 316 (470)
Q Consensus 237 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 316 (470)
.....+...+...|++++|.+.++.+...+.. +...+..+..++.+.|++++|..++++..+.+ +.+...+..+...|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 34445555566666666666666666554432 55555566666666666666666666655542 23445555555566
Q ss_pred HhcCCHhHHHHHHHhchh
Q 012126 317 CREGRAIDACKVLEDMPS 334 (470)
Q Consensus 317 ~~~~~~~~a~~~~~~m~~ 334 (470)
...|++++|...|+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666555
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.0016 Score=54.77 Aligned_cols=187 Identities=12% Similarity=0.084 Sum_probs=109.7
Q ss_pred cCChhHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCH
Q 012126 214 NGDISIAYTLFNKMFER---G-VMPDVE-SYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDT-LSYTTLLNSLCRKKKL 287 (470)
Q Consensus 214 ~g~~~~a~~~~~~m~~~---~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~ 287 (470)
..+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++.+.+.- |.. .+-..-.-.+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 45667777777766532 3 333332 34445555666777777777777766553 222 2211111223346777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 012126 288 REAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLM 367 (470)
Q Consensus 288 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 367 (470)
++|.++++.+.+.. +.|.+++-.=+...-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 77777777777664 334555555555555666666777777666665 4557777777777777777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHC
Q 012126 368 ISKGFSPHFSVSHALIKGFCNV---GKVDEACGVLEELLKA 405 (470)
Q Consensus 368 ~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~ 405 (470)
+-.. +-+...+..+.+.+.-. .+++-|.++|.+.++.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 6532 22333444444443322 2456667777776663
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.17 E-value=0.0099 Score=58.94 Aligned_cols=191 Identities=10% Similarity=0.044 Sum_probs=117.6
Q ss_pred HhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchh
Q 012126 69 IASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDR 148 (470)
Q Consensus 69 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 148 (470)
+.+.|..++|..+++.....+ ..|..|...+-..|.+.++.++|..+|++..... |+......+..+|++.+.+.+
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888765443 3477788888888888888999998888887664 557777778888888776644
Q ss_pred ----HHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCC---------hhhHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhc
Q 012126 149 ----ALKTFRSMLEFNCKPLPKQLNRILELLVTHRNY---------LRPAFDLFKSAHKHG-VLPNTKSYNIMMRAFCFN 214 (470)
Q Consensus 149 ----A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~---------~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~ 214 (470)
|+++++...+ ....+-.+++.+...... ..-|.+.++.+.+.+ ..-+..-...-...+-..
T Consensus 129 qQkaa~~LyK~~pk-----~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~ 203 (932)
T KOG2053|consen 129 QQKAALQLYKNFPK-----RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQ 203 (932)
T ss_pred HHHHHHHHHHhCCc-----ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhc
Confidence 5555553322 334444444444432221 234666677766544 221222222333445567
Q ss_pred CChhHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 012126 215 GDISIAYTLF-NKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFV 268 (470)
Q Consensus 215 g~~~~a~~~~-~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 268 (470)
|++++|.+++ ....+.-...+...-+.-+..+...+++.+..++-.++...|..
T Consensus 204 ~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 204 GKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred ccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 8888888888 33444333334444455566666777777777777776666543
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.15 E-value=0.00011 Score=67.93 Aligned_cols=118 Identities=13% Similarity=0.053 Sum_probs=58.3
Q ss_pred HHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 012126 313 VLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKV 392 (470)
Q Consensus 313 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 392 (470)
+..+...++++.|+.+++++.+.. |+ ....++..+...++-.+|.+++++.++. .+.+......-...|.+.+++
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCH
Confidence 333444455555555555555432 32 2223444444445555555555555543 122344444444555555555
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 012126 393 DEACGVLEELLKAGEAPH-EDTWVMIVPQICAGEEMEKLGEVLNEI 437 (470)
Q Consensus 393 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m 437 (470)
+.|+++.+++.+.. |+ ..+|..|..+|.+.|++++|+..++.+
T Consensus 251 ~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 55555555555532 22 335555555555555555555555544
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.15 E-value=0.00013 Score=67.45 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=97.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 012126 203 SYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLC 282 (470)
Q Consensus 203 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 282 (470)
....|++.+...++++.|..+|+++.+.. |+ ....++..+...++..+|++++.+..+.... +......-.+.+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34456667777888999999999988874 33 4445778888888888999998888876443 5666666677788
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHhchh
Q 012126 283 RKKKLREAYKLLCRMKVKGCNPD-IVHYNTVVLGFCREGRAIDACKVLEDMPS 334 (470)
Q Consensus 283 ~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 334 (470)
+.++.+.|+.+.+++.+. .|+ -.+|..|..+|.+.|+++.|+..++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 889999999999998876 444 45889999999999999999988887753
No 140
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.11 E-value=0.013 Score=58.17 Aligned_cols=223 Identities=13% Similarity=0.098 Sum_probs=109.9
Q ss_pred HccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChh
Q 012126 106 GRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKI--YAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLR 183 (470)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 183 (470)
...++|..|......+.+.. |+.. |...+.+ ..+.|+.++|..+++.....+ ++....-..+..+++..+..+
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhh
Confidence 45567777777777766553 2221 2223332 346677777777666655432 333333344555555666677
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------hH
Q 012126 184 PAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQ----------VN 253 (470)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----------~~ 253 (470)
+|..+|+...... |+......+..+|.+.+++.+-.++--++-+. .+-+...+=.+++....... ..
T Consensus 95 ~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 7777777766543 55555666666666666665443333333222 11122333333333333211 12
Q ss_pred HHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHh
Q 012126 254 RAVDLLEDMLNKG-FVPDTLSYTTLLNSLCRKKKLREAYKLLCR-MKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLED 331 (470)
Q Consensus 254 ~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 331 (470)
-|.+.++.+.+.+ ..-+..-.-.-...+...|++++|.+++.. ..+.-..-+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 2444444444433 111111111122233445667777776632 33222222333334455566666777776666666
Q ss_pred chhCC
Q 012126 332 MPSNG 336 (470)
Q Consensus 332 m~~~~ 336 (470)
+...|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 66654
No 141
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=6.3e-06 Score=47.37 Aligned_cols=32 Identities=38% Similarity=0.796 Sum_probs=15.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 012126 379 SHALIKGFCNVGKVDEACGVLEELLKAGEAPH 410 (470)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 410 (470)
|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 44444444444444444444444444444443
No 142
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.09 E-value=7.2e-05 Score=69.40 Aligned_cols=124 Identities=13% Similarity=0.154 Sum_probs=96.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhh
Q 012126 196 GVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFER--GVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLS 273 (470)
Q Consensus 196 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 273 (470)
+...+......+++.+....+++.+..++.+.... ....-..|.+++++.|.+.|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33457777778888888888888888888887765 2322345667888888888888999888888888888889999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 012126 274 YTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCRE 319 (470)
Q Consensus 274 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 319 (470)
++.||+.+.+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999998888888887776666667776666666555
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.09 E-value=6.5e-06 Score=47.30 Aligned_cols=34 Identities=21% Similarity=0.448 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHccccCCc
Q 012126 413 TWVMIVPQICAGEEMEKLGEVLNEIVKVEIKGDT 446 (470)
Q Consensus 413 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 446 (470)
+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999983
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.08 E-value=0.00036 Score=55.59 Aligned_cols=85 Identities=15% Similarity=0.114 Sum_probs=33.1
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 012126 244 QGLCRKSQVNRAVDLLEDMLNKGFVPDT--LSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGR 321 (470)
Q Consensus 244 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 321 (470)
..+...|++++|...|+........++. .....|...+...|++++|+..++..... ......+......|.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCC
Confidence 3444444444444444444443321111 12222333444444444444444332221 1122233333344444444
Q ss_pred HhHHHHHHH
Q 012126 322 AIDACKVLE 330 (470)
Q Consensus 322 ~~~a~~~~~ 330 (470)
.++|...|+
T Consensus 134 ~~~A~~~y~ 142 (145)
T PF09976_consen 134 YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHH
Confidence 444444443
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.06 E-value=7.1e-06 Score=46.80 Aligned_cols=33 Identities=42% Similarity=0.699 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 012126 202 KSYNIMMRAFCFNGDISIAYTLFNKMFERGVMP 234 (470)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 234 (470)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666665554
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.05 E-value=0.00029 Score=56.18 Aligned_cols=20 Identities=5% Similarity=0.054 Sum_probs=8.2
Q ss_pred HHHHHHHcCCcHHHHHHHHH
Q 012126 416 MIVPQICAGEEMEKLGEVLN 435 (470)
Q Consensus 416 ~l~~~~~~~g~~~~a~~~~~ 435 (470)
.....|.+.|++++|...|+
T Consensus 123 ~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 123 LLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHH
Confidence 33334444444444444443
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.05 E-value=9.3e-06 Score=46.29 Aligned_cols=32 Identities=25% Similarity=0.479 Sum_probs=15.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 012126 378 VSHALIKGFCNVGKVDEACGVLEELLKAGEAP 409 (470)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 409 (470)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 148
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.02 E-value=9.1e-05 Score=68.71 Aligned_cols=120 Identities=15% Similarity=0.154 Sum_probs=67.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHH
Q 012126 270 DTLSYTTLLNSLCRKKKLREAYKLLCRMKVK--GCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTL 347 (470)
Q Consensus 270 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 347 (470)
+......+++.+....+++.+..++.+.... ....-..|..++|+.|.+.|..++++.+++.=...|+-||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 5555555566555555566666666555443 11122234446666666666666666666666666666666666666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 012126 348 VGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNV 389 (470)
Q Consensus 348 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 389 (470)
++.+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666655554444444444444444433
No 149
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.87 E-value=0.00043 Score=50.36 Aligned_cols=77 Identities=12% Similarity=0.300 Sum_probs=53.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012126 347 LVGGLCDQGMFDVAKKYMQLMISKGF-SPHFSVSHALIKGFCNVG--------KVDEACGVLEELLKAGEAPHEDTWVMI 417 (470)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~l 417 (470)
.|..|...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ++-+.+.+|+.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34445555777777777777777777 677777777776665432 244566778888888888888888888
Q ss_pred HHHHHc
Q 012126 418 VPQICA 423 (470)
Q Consensus 418 ~~~~~~ 423 (470)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 877654
No 150
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.86 E-value=0.00029 Score=51.26 Aligned_cols=76 Identities=21% Similarity=0.471 Sum_probs=42.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHhCCCCCCHhhHHHH
Q 012126 207 MMRAFCFNGDISIAYTLFNKMFERGV-MPDVESYRILMQGLCRKSQ--------VNRAVDLLEDMLNKGFVPDTLSYTTL 277 (470)
Q Consensus 207 li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~l 277 (470)
.|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- .-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444445666666666666666666 6666666666665554321 23344555555555555555555555
Q ss_pred HHHHH
Q 012126 278 LNSLC 282 (470)
Q Consensus 278 l~~~~ 282 (470)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 55443
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.79 E-value=0.00079 Score=51.45 Aligned_cols=98 Identities=15% Similarity=0.096 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 012126 343 SYRTLVGGLCDQGMFDVAKKYMQLMISKGF--SPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEA--PHEDTWVMIV 418 (470)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~l~ 418 (470)
++..+...+.+.|++++|.+.+..+.+..- ......+..+..++.+.|++++|...|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455556666677777777666665321 111234455666666777777777777766653211 1134555666
Q ss_pred HHHHcCCcHHHHHHHHHHHHHc
Q 012126 419 PQICAGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 419 ~~~~~~g~~~~a~~~~~~m~~~ 440 (470)
.++.+.|++++|.+.++++++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666677777777777776654
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.78 E-value=0.00051 Score=49.68 Aligned_cols=93 Identities=15% Similarity=0.143 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 012126 345 RTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAG 424 (470)
Q Consensus 345 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 424 (470)
..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++...+... .+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHH
Confidence 344455555666666666666665542 22334555556666666666666666666655432 2334566666666666
Q ss_pred CcHHHHHHHHHHHHH
Q 012126 425 EEMEKLGEVLNEIVK 439 (470)
Q Consensus 425 g~~~~a~~~~~~m~~ 439 (470)
|++++|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 667777666666653
No 153
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.78 E-value=3.9e-05 Score=42.54 Aligned_cols=29 Identities=34% Similarity=0.784 Sum_probs=13.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 012126 378 VSHALIKGFCNVGKVDEACGVLEELLKAG 406 (470)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (470)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444433
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.74 E-value=0.00087 Score=48.43 Aligned_cols=91 Identities=16% Similarity=0.151 Sum_probs=44.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 012126 206 IMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKK 285 (470)
Q Consensus 206 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 285 (470)
.+...+...|++++|..++++..+.... +...+..+..++...+++++|.+.++...+.... +..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHH
Confidence 3444445555555555555555443221 2244444555555555555555555555444322 2234444445555555
Q ss_pred CHHHHHHHHHHHH
Q 012126 286 KLREAYKLLCRMK 298 (470)
Q Consensus 286 ~~~~a~~~~~~m~ 298 (470)
+.+.|...+....
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555554443
No 155
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.73 E-value=5.3e-05 Score=42.00 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHccc
Q 012126 412 DTWVMIVPQICAGEEMEKLGEVLNEIVKVEI 442 (470)
Q Consensus 412 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 442 (470)
.+|+.++++|++.|++++|.+++++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3799999999999999999999999998874
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.72 E-value=0.0031 Score=51.88 Aligned_cols=91 Identities=8% Similarity=0.013 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPD--VESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTL 277 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 277 (470)
....+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|+..+.+..+.... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 344566777777888888888888888876543332 356777778888888888888888888775433 45566666
Q ss_pred HHHHHhcCCHHHHH
Q 012126 278 LNSLCRKKKLREAY 291 (470)
Q Consensus 278 l~~~~~~~~~~~a~ 291 (470)
..++...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 66777766654443
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.71 E-value=0.0022 Score=48.97 Aligned_cols=97 Identities=13% Similarity=-0.003 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC--CHhhHHHHHH
Q 012126 204 YNIMMRAFCFNGDISIAYTLFNKMFERGVM--PDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVP--DTLSYTTLLN 279 (470)
Q Consensus 204 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~ 279 (470)
+..+...+.+.|++++|.+.|+.+...... .....+..+..++.+.|+++.|...|+.+....... ....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455555566666666666665543211 012344445555666666666666666555432211 1233444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 012126 280 SLCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 280 ~~~~~~~~~~a~~~~~~m~~~ 300 (470)
++.+.|+.++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555566666666666655554
No 158
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.70 E-value=0.024 Score=49.39 Aligned_cols=177 Identities=13% Similarity=0.097 Sum_probs=92.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 012126 242 LMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSY---TTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCR 318 (470)
Q Consensus 242 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 318 (470)
....+...|++++|++.|+++...-+.. .... -.+..++.+.+++++|...+++..+....-....|...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3334455666666666666666543322 1221 23445556666666666666666554211111222222332221
Q ss_pred --c---------------CC---HhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 012126 319 --E---------------GR---AIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSV 378 (470)
Q Consensus 319 --~---------------~~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 378 (470)
. .+ ..+|+..|+++++ -|=...-..+|...+..+... + ...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~-l---a~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR-L---AKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH-H---HHH
Confidence 0 01 1233344444333 333333344454444444331 0 011
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 012126 379 SHALIKGFCNVGKVDEACGVLEELLKA--GEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIV 438 (470)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 438 (470)
--.+..-|.+.|.+..|..-++.+++. +.+........++.+|...|..++|.+....+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 124556688888888888888888765 333445567777888888888888887766553
No 159
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.69 E-value=0.002 Score=50.68 Aligned_cols=99 Identities=8% Similarity=-0.103 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLN 279 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 279 (470)
+......+...+...|++++|.++|+.+....+. +..-|-.|.-++-..|++++|+..|......++. |...+-.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 3444555666677889999999999888776544 5666777788888888999999999888887754 7777778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 012126 280 SLCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 280 ~~~~~~~~~~a~~~~~~m~~~ 300 (470)
++...|+.+.|.+-|+..+..
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888889999988888877654
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.68 E-value=8.4e-05 Score=52.87 Aligned_cols=81 Identities=21% Similarity=0.292 Sum_probs=48.4
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHH
Q 012126 354 QGMFDVAKKYMQLMISKGF-SPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGE 432 (470)
Q Consensus 354 ~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 432 (470)
.|+++.|+.+++++.+... .++...+..+..+|.+.|++++|..+++. .+.+. .+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4667777777777776532 11334444567777777777777777766 22221 123444455667777777777777
Q ss_pred HHHH
Q 012126 433 VLNE 436 (470)
Q Consensus 433 ~~~~ 436 (470)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
No 161
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.66 E-value=0.0011 Score=59.13 Aligned_cols=130 Identities=13% Similarity=0.095 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 012126 272 LSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLG-FCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGG 350 (470)
Q Consensus 272 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 350 (470)
.+|..+++..-+.+..+.|..+|.+..+.+ ..+...|-..... |...++.+.|.++|+...+. +..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356667777777777777777777776542 1123333333333 22245566677777776654 44456666667777
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 012126 351 LCDQGMFDVAKKYMQLMISKGFSPH---FSVSHALIKGFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 351 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (470)
+...|+.+.|..+|++.+.. +.++ ..+|...+..=.+.|+++.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777654 2222 23677777777777777777777777766
No 162
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.65 E-value=0.048 Score=50.17 Aligned_cols=138 Identities=12% Similarity=0.102 Sum_probs=89.6
Q ss_pred HhHHHHHHHhchhCCCCC-CHHHHHHH----HHHHHh---cCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHH--HH
Q 012126 322 AIDACKVLEDMPSNGCLP-NLVSYRTL----VGGLCD---QGMFDVAKKYMQLMISKGFSP----HFSVSHALIKG--FC 387 (470)
Q Consensus 322 ~~~a~~~~~~m~~~~~~p-~~~~~~~l----i~~~~~---~g~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~--~~ 387 (470)
-++|+++++.+.+- .+ |...-|.+ =.+|.+ ...+....++-+-+.+.|+.| +...-|.|.++ +.
T Consensus 396 dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLy 473 (549)
T PF07079_consen 396 DEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLY 473 (549)
T ss_pred cHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence 55667777666552 22 22222222 123322 334555555556666677765 34455666554 56
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHccccCCceeeecccchhhHhhHHhhcCC
Q 012126 388 NVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVEIKGDTRIVEAGIGLEDYLIGKTRSRP 467 (470)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 467 (470)
..|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|..++.++ .|+..+.+.-+--...+.-|+-+|+
T Consensus 474 sqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dskvqKAl~lCqKh~~kd 546 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSKVQKALALCQKHLPKD 546 (549)
T ss_pred hcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHHHHHHHHHHHHhhhhh
Confidence 78999998877666666 7799999999999999999999999999865 4666666665555555556666555
Q ss_pred C
Q 012126 468 R 468 (470)
Q Consensus 468 ~ 468 (470)
+
T Consensus 547 ~ 547 (549)
T PF07079_consen 547 L 547 (549)
T ss_pred h
Confidence 4
No 163
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.00034 Score=60.28 Aligned_cols=100 Identities=15% Similarity=0.143 Sum_probs=66.6
Q ss_pred HHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 012126 316 FCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEA 395 (470)
Q Consensus 316 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 395 (470)
+.+.+++.+|+..|.+.++.. +-|.+.|..-..+|.+.|.++.|++-.+..+..+ +.....|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 556777777777777777742 2355566666777777777777777777766642 12245777777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHH
Q 012126 396 CGVLEELLKAGEAPHEDTWVMIVP 419 (470)
Q Consensus 396 ~~~~~~~~~~~~~p~~~~~~~l~~ 419 (470)
.+.|++.++ +.|+..+|..=+.
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHH
Confidence 777777776 4566666654443
No 164
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.64 E-value=0.0024 Score=57.02 Aligned_cols=128 Identities=17% Similarity=0.111 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 012126 203 SYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCR-KSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSL 281 (470)
Q Consensus 203 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 281 (470)
+|..+|+..-+.+..+.|..+|.+..+.+ ..+..+|......-.. .++.+.|..+|+...+. +..+...|..-++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555666666666666666666665332 1133333333333222 34445566666665544 222455555555666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHhchh
Q 012126 282 CRKKKLREAYKLLCRMKVKGCNPDI----VHYNTVVLGFCREGRAIDACKVLEDMPS 334 (470)
Q Consensus 282 ~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~ 334 (470)
.+.++.+.|..+|++.... .+.. ..|...+..=.+.|+.+.+.++.+.+.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666665544 2222 2555555555555666666666555555
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.60 E-value=0.0014 Score=60.80 Aligned_cols=105 Identities=10% Similarity=-0.037 Sum_probs=82.6
Q ss_pred HHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 012126 66 QKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNL 145 (470)
Q Consensus 66 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 145 (470)
+......+++..|++.|+.+.... +.+...|..+..++.+.|++++|...++.+.... |.+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 355567889999999999887654 4567788888888899999999999999988775 5677888888889999999
Q ss_pred chhHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 012126 146 PDRALKTFRSMLEFNCKPLPKQLNRILELL 175 (470)
Q Consensus 146 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 175 (470)
+++|+..|++.++ +.|+.......+..+
T Consensus 86 ~~eA~~~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 9999999998887 346655555554443
No 166
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.59 E-value=0.023 Score=49.46 Aligned_cols=185 Identities=10% Similarity=0.081 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVES--YRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTL 277 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 277 (470)
+...+-.....+...|++++|.+.|+++....+...... .-.+..++.+.+++++|...+++..+..+.-....+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 344444455556678999999999998887644332111 234567788889999999999988876544333334333
Q ss_pred HHHHHh--c---------------CCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCC
Q 012126 278 LNSLCR--K---------------KKL---REAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGC 337 (470)
Q Consensus 278 l~~~~~--~---------------~~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 337 (470)
+.+.+. . .|. ..|...|+.+++. |-...-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH--
Confidence 333321 1 111 2333444444443 33334455555544444332
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 012126 338 LPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISK--GFSPHFSVSHALIKGFCNVGKVDEACGVLEELL 403 (470)
Q Consensus 338 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 403 (470)
.-..-+ .+..-|.+.|.+..|..-++.+++. +.+........++.+|...|..++|.++...+.
T Consensus 174 -la~~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 -LAKYEL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -HHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 111112 3456678888888888888888874 223345566677788888888888888776553
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.59 E-value=0.00017 Score=51.31 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=6.5
Q ss_pred HHHHHHcCChHHHHHHH
Q 012126 243 MQGLCRKSQVNRAVDLL 259 (470)
Q Consensus 243 l~~~~~~~~~~~a~~~~ 259 (470)
..+|.+.|++++|+.++
T Consensus 32 a~~~~~~~~y~~A~~~~ 48 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELL 48 (84)
T ss_dssp HHHHHHTTHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 33333333333333333
No 168
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.58 E-value=0.056 Score=49.01 Aligned_cols=122 Identities=17% Similarity=0.160 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 012126 272 LSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGL 351 (470)
Q Consensus 272 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 351 (470)
.+.+..|.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++..++... . -++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-----KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-K-----KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-----CCCCChHHHHHHH
Confidence 345555667777899888888876664 46888899999999999999988876543 1 2347788899999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012126 352 CDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVP 419 (470)
Q Consensus 352 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 419 (470)
.+.|+..+|..+..++ + +..-+..|.++|++.+|.+.-.+. -|...+..+..
T Consensus 248 ~~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~------kd~~~L~~i~~ 299 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKE------KDIDLLKQILK 299 (319)
T ss_pred HHCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHc------CCHHHHHHHHH
Confidence 9999999999888772 1 255677888999999998765443 25555555544
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.56 E-value=0.0034 Score=58.23 Aligned_cols=87 Identities=18% Similarity=0.051 Sum_probs=61.7
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 012126 178 HRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVD 257 (470)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 257 (470)
..++++.|+..|++.++.... +...|..+..+|...|++++|+..+++.++.... +...|..+..+|...|++++|+.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 445677777777777776543 5666777777777777777777777777766433 56667777777777777777777
Q ss_pred HHHHHHhCC
Q 012126 258 LLEDMLNKG 266 (470)
Q Consensus 258 ~~~~~~~~~ 266 (470)
.|++..+.+
T Consensus 92 ~~~~al~l~ 100 (356)
T PLN03088 92 ALEKGASLA 100 (356)
T ss_pred HHHHHHHhC
Confidence 777777654
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.55 E-value=0.0017 Score=51.01 Aligned_cols=95 Identities=7% Similarity=-0.051 Sum_probs=63.3
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012126 133 FTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFC 212 (470)
Q Consensus 133 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 212 (470)
.-.+...+...|++++|..+|+.+.. +.|....+..=|..+.+..|++++|+..|......++. |...+-.+..++.
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L 114 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 33444555567777777777777666 44666666666666666677777777777777666543 6666667777777
Q ss_pred hcCChhHHHHHHHHHHHC
Q 012126 213 FNGDISIAYTLFNKMFER 230 (470)
Q Consensus 213 ~~g~~~~a~~~~~~m~~~ 230 (470)
..|+.+.|.+-|+..+..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777766544
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.54 E-value=0.0056 Score=50.40 Aligned_cols=61 Identities=11% Similarity=-0.021 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHhchh
Q 012126 274 YTTLLNSLCRKKKLREAYKLLCRMKVKGCNPD--IVHYNTVVLGFCREGRAIDACKVLEDMPS 334 (470)
Q Consensus 274 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 334 (470)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444445555555555555443321111 23344444444444444444444444443
No 172
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.53 E-value=0.00097 Score=54.98 Aligned_cols=88 Identities=18% Similarity=0.196 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc----------------CChHHHH
Q 012126 303 NPDIVHYNTVVLGFCRE-----GRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQ----------------GMFDVAK 361 (470)
Q Consensus 303 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------------g~~~~a~ 361 (470)
..+..+|..+++.|.+. |..+=....++.|.+-|+.-|..+|+.|++.+=+. .+-+.|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 34778888888887644 55666666777788888888888888888876431 1235566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 012126 362 KYMQLMISKGFSPHFSVSHALIKGFCNVG 390 (470)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g 390 (470)
+++++|...|+-||..++..++..|++.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 66666666666666666666666665554
No 173
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.51 E-value=0.0035 Score=51.82 Aligned_cols=104 Identities=19% Similarity=0.319 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHHc-----CCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHH
Q 012126 128 VTPSLFTYLIKIYAES-----NLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTK 202 (470)
Q Consensus 128 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 202 (470)
.+..+|..+++.|.+. |.++-....+..|.+.|+.-|..+|+.||..+=+ |.+ .|..
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK--g~f---------------vp~n- 106 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK--GKF---------------VPRN- 106 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC--CCc---------------cccc-
Confidence 4666677666666553 3444444555555555555555555555554421 100 0111
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 012126 203 SYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQ 251 (470)
Q Consensus 203 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 251 (470)
.+.++..- .-.+.+-|++++++|...|+.||.+|+..+++.+.+.+.
T Consensus 107 ~fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111000 112345567777777777777777777777777765544
No 174
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.48 E-value=0.037 Score=44.53 Aligned_cols=128 Identities=17% Similarity=0.109 Sum_probs=65.9
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCC---CCCCHHHH
Q 012126 268 VPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNG---CLPNLVSY 344 (470)
Q Consensus 268 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~ 344 (470)
.|++..-..|..+....|+..+|...|++....-+--|....-.+.++....+++..|...++++.+.+ -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 345555555556666666666666666665544344455555555555556666666666666555432 1222 22
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 012126 345 RTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVL 399 (470)
Q Consensus 345 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 399 (470)
-.+...+...|....|+..|+...+. -|+...-......+.+.|+.+++..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 33445555566666666666665553 233333223333344555555444333
No 175
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.47 E-value=0.011 Score=56.91 Aligned_cols=238 Identities=14% Similarity=0.085 Sum_probs=133.8
Q ss_pred CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhC-CCcc--------CHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCC
Q 012126 127 PVTPSLFTYLIKIYAESNLPDRALKTFRSMLEF-NCKP--------LPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGV 197 (470)
Q Consensus 127 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p--------~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~ 197 (470)
.|.+..|..|.+.....-.++.|...|-+.... |++. +...-..-+.+ --|.+++|+++|-++-+.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~---~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA---FYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh---hhcchhHhhhhhhccchhh-
Confidence 467888888888777777777777777665432 2211 00000111111 2245777777776655432
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHH
Q 012126 198 LPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGV--MPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYT 275 (470)
Q Consensus 198 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (470)
..+..+.+.|++-.+.++++.-- .+. .--...|+.+...++....+++|.+.|...... .
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e 826 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------E 826 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------H
Confidence 33556666777766666654311 000 012355666777777777777777776553221 2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC
Q 012126 276 TLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQG 355 (470)
Q Consensus 276 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 355 (470)
..++++.+..++++-+.+-+.+.+ +....-.+..++...|.-++|.+.+-+-.. |- ..+..|...+
T Consensus 827 ~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~Ln 892 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCVELN 892 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHHHHH
Confidence 345666666666655555544433 445566677888888888888877654322 21 2456677777
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHH--------------HHHHHHHHccCCHHHHHHHHHHHHH
Q 012126 356 MFDVAKKYMQLMISKGFSPHFSVS--------------HALIKGFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 356 ~~~~a~~~~~~~~~~~~~~~~~~~--------------~~li~~~~~~g~~~~a~~~~~~~~~ 404 (470)
++.+|.++-+...- |...+. ---|..+.+.|+.-+|.+++.+|.+
T Consensus 893 QW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 893 QWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 77777776554311 111111 1134556677777777777777754
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.47 E-value=0.0089 Score=53.65 Aligned_cols=91 Identities=13% Similarity=0.045 Sum_probs=50.1
Q ss_pred HHHHHhc-CCHhHHHHHHHhchhC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHH-HH
Q 012126 313 VLGFCRE-GRAIDACKVLEDMPSN----GCLP--NLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSP-----HFS-VS 379 (470)
Q Consensus 313 i~~~~~~-~~~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~-~~ 379 (470)
...|... |++++|++.|++..+. | .+ -...+..+...+.+.|++++|.++|+++...-... +.. .+
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 3345555 6777777777765432 2 11 12345556667777888888888887776643221 111 22
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHH
Q 012126 380 HALIKGFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~ 404 (470)
-..+-++...|++..|.+.+++...
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2233355566777778777777765
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.47 E-value=0.0062 Score=49.90 Aligned_cols=94 Identities=7% Similarity=-0.054 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 012126 201 TKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMP--DVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLL 278 (470)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 278 (470)
...|..+...+...|++++|...|++.......+ ...++..+..++...|++++|+..++........ ...++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 4556666777777888888888888876653322 2346777777888888888888888887765322 334455555
Q ss_pred HHHH-------hcCCHHHHHHHHH
Q 012126 279 NSLC-------RKKKLREAYKLLC 295 (470)
Q Consensus 279 ~~~~-------~~~~~~~a~~~~~ 295 (470)
..+. +.|+++.|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 5555 5556554444433
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.46 E-value=0.00048 Score=46.59 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=41.6
Q ss_pred HccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHH
Q 012126 106 GRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRIL 172 (470)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 172 (470)
.+.|++++|.++++.+.... |.+..++..+..+|.+.|++++|.++++.+... .|+...+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 35567777777777776664 556677777777777777777777777777663 35555554443
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.44 E-value=0.0028 Score=51.93 Aligned_cols=63 Identities=13% Similarity=-0.011 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012126 307 VHYNTVVLGFCREGRAIDACKVLEDMPSNGCLP--NLVSYRTLVGGLCDQGMFDVAKKYMQLMIS 369 (470)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 369 (470)
..|..+...+...|++++|+..|+........+ ...++..+...+...|++++|...++...+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444455555556666666555554432111 123455555555566666666666655554
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.42 E-value=0.02 Score=51.45 Aligned_cols=130 Identities=12% Similarity=0.105 Sum_probs=58.2
Q ss_pred HHHHHHHHhc-CChhHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-----CHh-
Q 012126 205 NIMMRAFCFN-GDISIAYTLFNKMFER----GVM-PDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVP-----DTL- 272 (470)
Q Consensus 205 ~~li~~~~~~-g~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~- 272 (470)
..+...|-.. |+++.|.+.|++..+. |-. --..++..+...+.+.|++++|+++|++........ +..
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 3444445454 5666666666554331 200 012344455566666666666666666665432211 111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHh--cCCHhHHHHHHHhchh
Q 012126 273 SYTTLLNSLCRKKKLREAYKLLCRMKVK--GCNPD--IVHYNTVVLGFCR--EGRAIDACKVLEDMPS 334 (470)
Q Consensus 273 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~--~~~~~~li~~~~~--~~~~~~a~~~~~~m~~ 334 (470)
.|-..+-++...||...|.+.+++.... ++..+ ......||.+|-. ...+.+++.-|+.+.+
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 1222233444456666666666666543 11111 2334445555432 2234555555555544
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.39 E-value=0.016 Score=56.36 Aligned_cols=61 Identities=11% Similarity=0.056 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012126 307 VHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMIS 369 (470)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 369 (470)
..|.++.......|++++|...+++..+.+ |+...|..+...+...|+.++|...+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444444444455555555555555532 4455555555555555555555555555544
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.38 E-value=0.015 Score=56.58 Aligned_cols=71 Identities=18% Similarity=0.041 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 012126 340 NLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTW 414 (470)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 414 (470)
+...|..+.-.....|++++|...++++++.+ |+...|..+...+...|+.++|.+.+++....+ |...+|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~~pt~ 489 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PGENTL 489 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCchH
Confidence 45667766666666788999999999888864 677788888888888999999999998887744 555554
No 183
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.029 Score=47.73 Aligned_cols=221 Identities=13% Similarity=0.117 Sum_probs=133.8
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHhhCCCC-----------CC------HHHHHHHHH--HHHHcCCchhHHHHHHHHH
Q 012126 97 TYLILILKLGRAKYFSLIDDILITLKSEHYP-----------VT------PSLFTYLIK--IYAESNLPDRALKTFRSML 157 (470)
Q Consensus 97 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~------~~~~~~li~--~~~~~g~~~~A~~~~~~~~ 157 (470)
.|..-+..+.+.+.+++|..-+......+-| |+ +.... ++. +....|.+.+.+.-+..+.
T Consensus 71 ~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR-~lhAe~~~~lgnpqesLdRl~~L~ 149 (366)
T KOG2796|consen 71 LWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMR-ILHAELQQYLGNPQESLDRLHKLK 149 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHH-HHHHHHHHhcCCcHHHHHHHHHHH
Confidence 3455567788888888887666555433211 11 11111 222 2234677777666555544
Q ss_pred hCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 012126 158 EFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVE 237 (470)
Q Consensus 158 ~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 237 (470)
.. ....+... ..+...+....++++-. ..+.+.++.++.-.|++.-....+++.++...+.+..
T Consensus 150 ~~--------V~~ii~~~-e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~ 213 (366)
T KOG2796|consen 150 TV--------VSKILANL-EQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQ 213 (366)
T ss_pred HH--------HHHHHHHH-HhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHH
Confidence 31 11112221 12222244444444332 3455667777777788888888888888887677788
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHH-----HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 012126 238 SYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLL-----NSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTV 312 (470)
Q Consensus 238 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-----~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 312 (470)
....|++.-.+.||.+.|...|++..+..-..|..+++.++ ..|.-.+++..|...+.++.... +.++..-|.-
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnK 292 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNK 292 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchH
Confidence 88888888888888888888888776554444555554443 33455678888888888776653 2244444443
Q ss_pred HHHHHhcCCHhHHHHHHHhchhC
Q 012126 313 VLGFCREGRAIDACKVLEDMPSN 335 (470)
Q Consensus 313 i~~~~~~~~~~~a~~~~~~m~~~ 335 (470)
.-+..-.|+..+|++.++.|.+.
T Consensus 293 ALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 293 ALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444467888888888888875
No 184
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.34 E-value=0.0029 Score=54.75 Aligned_cols=104 Identities=13% Similarity=0.048 Sum_probs=82.1
Q ss_pred hcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhH
Q 012126 70 ASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRA 149 (470)
Q Consensus 70 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 149 (470)
-..+++.+|++.+..++... +-+..-|..-..+|.+.|.++.|++=.+..+.-+ |....+|..|..+|...|++++|
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 34678889999999888664 4566677778888999999999988888877765 55677888899999999999999
Q ss_pred HHHHHHHHhCCCccCHHHHHHHHHHHHhc
Q 012126 150 LKTFRSMLEFNCKPLPKQLNRILELLVTH 178 (470)
Q Consensus 150 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 178 (470)
++.|++.++ +.|+..+|..-|...-..
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKIAEQK 195 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHHHHHH
Confidence 999988887 678888777666655433
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.30 E-value=0.0009 Score=44.74 Aligned_cols=56 Identities=14% Similarity=0.294 Sum_probs=35.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 012126 383 IKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVK 439 (470)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 439 (470)
...+...|++++|.+.|++.++... -+...|..+..++...|++++|...++++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456666777777777777766542 2455666666677777777777777777664
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.27 E-value=0.074 Score=51.11 Aligned_cols=258 Identities=15% Similarity=0.086 Sum_probs=119.5
Q ss_pred HHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCC
Q 012126 101 LILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRN 180 (470)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 180 (470)
-+-.+...|.+++|.++- +.......|..|.......=+++-|.+.|.+.....
T Consensus 562 ~m~q~Ieag~f~ea~~ia------clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~-------------------- 615 (1081)
T KOG1538|consen 562 PMYQYIERGLFKEAYQIA------CLGVTDTDWRELAMEALEALDFETARKAYIRVRDLR-------------------- 615 (1081)
T ss_pred cchhhhhccchhhhhccc------ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccH--------------------
Confidence 344556667776665432 222333445555555555555556665555443311
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHHHcCChHH
Q 012126 181 YLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPD-VESYR-----ILMQGLCRKSQVNR 254 (470)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~-----~ll~~~~~~~~~~~ 254 (470)
+-+...-++++.+.|-.|+... +...++-.|++.+|-++|.+- |.... .+.|+ -..+-+...|+.++
T Consensus 616 -~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~aQE~~~~g~~~e 688 (1081)
T KOG1538|consen 616 -YLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYAQEFLGSGDPKE 688 (1081)
T ss_pred -HHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHHHHHhhcCChHH
Confidence 2223334456666666666543 234455567777777766542 22100 01111 12233334444433
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH------HHHHcCCC---CCHHHHHHHHHHHHhcCCHhHH
Q 012126 255 AVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLC------RMKVKGCN---PDIVHYNTVVLGFCREGRAIDA 325 (470)
Q Consensus 255 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~------~m~~~~~~---~~~~~~~~li~~~~~~~~~~~a 325 (470)
-..+.++-.+- .-+..-=.+..+++...|+.++|..+.- .+.+.+-+ .+..+...+...+.+...+.-|
T Consensus 689 KKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLA 766 (1081)
T KOG1538|consen 689 KKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLA 766 (1081)
T ss_pred HHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchH
Confidence 33333221110 0011111123344445566665555421 11111111 1333444444445555666667
Q ss_pred HHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHccCCHHH
Q 012126 326 CKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFS-----------VSHALIKGFCNVGKVDE 394 (470)
Q Consensus 326 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----------~~~~li~~~~~~g~~~~ 394 (470)
-++|..|-+. ..+++.....+++++|..+-+...+. .+|.. -|.-.-.+|.+.|+-.+
T Consensus 767 aeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~E 835 (1081)
T KOG1538|consen 767 AEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQRE 835 (1081)
T ss_pred HHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHH
Confidence 7777766442 33566667777777777776665442 23311 11122244556666666
Q ss_pred HHHHHHHHHH
Q 012126 395 ACGVLEELLK 404 (470)
Q Consensus 395 a~~~~~~~~~ 404 (470)
|.++++++..
T Consensus 836 A~~vLeQLtn 845 (1081)
T KOG1538|consen 836 AVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHhhh
Confidence 6666666543
No 187
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.24 E-value=0.0019 Score=43.71 Aligned_cols=64 Identities=13% Similarity=0.099 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHc
Q 012126 376 FSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGE-EMEKLGEVLNEIVKV 440 (470)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 440 (470)
..+|..+...+...|++++|+..|++.++.+. -+...|..+..++...| ++++|++.+++.++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45666666777777777777777777766542 24556666777777777 677777777776643
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.24 E-value=0.025 Score=42.84 Aligned_cols=88 Identities=20% Similarity=0.187 Sum_probs=44.6
Q ss_pred HHHHhcCCHhHHHHHHHhchhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHH
Q 012126 314 LGFCREGRAIDACKVLEDMPSNGCLPN--LVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPH----FSVSHALIKGFC 387 (470)
Q Consensus 314 ~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~ 387 (470)
.++-..|+.++|+.+|++..+.|.... ...+..+...+...|++++|..++++..... |+ ......+..++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 344455666666666666655554332 2234445555566666666666666655431 21 111122223455
Q ss_pred ccCCHHHHHHHHHHHH
Q 012126 388 NVGKVDEACGVLEELL 403 (470)
Q Consensus 388 ~~g~~~~a~~~~~~~~ 403 (470)
..|+.++|...+-..+
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5666666666555443
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.22 E-value=0.0015 Score=44.04 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=20.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchh
Q 012126 284 KKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPS 334 (470)
Q Consensus 284 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 334 (470)
.|++++|.++|+++.... +-+...+..+..+|.+.|++++|.++++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444443331 11333333444444444444444444444444
No 190
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.16 E-value=0.061 Score=45.54 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=27.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012126 208 MRAFCFNGDISIAYTLFNKMFERGVM--PDVESYRILMQGLCRKSQVNRAVDLLEDMLNK 265 (470)
Q Consensus 208 i~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 265 (470)
...+...|++++|.+.|+.+....+. --....-.++.++.+.|+++.|...++.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444555566666555555543211 11223334455555555555555555555543
No 191
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.14 E-value=0.19 Score=45.65 Aligned_cols=108 Identities=12% Similarity=0.120 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012126 308 HYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFC 387 (470)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 387 (470)
+.+..|.-+...|+...|.++-.+.. -|+...|...+.+++..++|++..++... . -.+.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 45556667778888888888877763 27888888899999999999988776542 1 23467888999999
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHH
Q 012126 388 NVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLN 435 (470)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 435 (470)
+.|...+|..+...+ + +..-+..|.+.|++.+|.+..-
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHH
Confidence 999999988887662 1 2445667788888888876543
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.11 E-value=0.028 Score=42.59 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=9.6
Q ss_pred HHHHHHHcCCchhHHHHHHHHH
Q 012126 136 LIKIYAESNLPDRALKTFRSML 157 (470)
Q Consensus 136 li~~~~~~g~~~~A~~~~~~~~ 157 (470)
+...+...|++++|+.+|++..
T Consensus 44 lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 44 LASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444433
No 193
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.046 Score=47.74 Aligned_cols=99 Identities=15% Similarity=0.101 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCCCCHhhHHH
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKS---QVNRAVDLLEDMLNKGFVPDTLSYTT 276 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ 276 (470)
|...|-.|...|...|+.+.|..-|.+..+...+ +...+..+..++.... +..++.++|++++..... |+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 6777777777777777777777777777665322 5555555555554432 245677777777766544 5666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 012126 277 LLNSLCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 277 ll~~~~~~~~~~~a~~~~~~m~~~ 300 (470)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 666677777777777777777766
No 194
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.10 E-value=0.0034 Score=41.86 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=18.6
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 012126 247 CRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRM 297 (470)
Q Consensus 247 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 297 (470)
...|++++|+..|+.+++.... +...+..+..++...|++++|...|+++
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3334444444444443333221 3333333333333344444444444333
No 195
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.08 E-value=0.24 Score=45.73 Aligned_cols=145 Identities=13% Similarity=0.135 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 012126 236 VESYRILMQGLCRKSQVNRAVDLLEDMLNKG-FVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHY-NTVV 313 (470)
Q Consensus 236 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li 313 (470)
..+|...++.-.+..-++.|..+|-++.+.| +.+++..+++++..++ .|+..-|.++|+--... -||...| +..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4566677777777777888888888888887 5677788888888776 47778888888765554 2344333 3455
Q ss_pred HHHHhcCCHhHHHHHHHhchhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012126 314 LGFCREGRAIDACKVLEDMPSNGCLPN--LVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGF 386 (470)
Q Consensus 314 ~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 386 (470)
.-+...++-..|..+|+...+. +.-+ ...|..+|.--..-|++..+..+-+.+.+. .|...+...+...|
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 5666778888888888865443 2223 457777777777778887777777777663 34444444444444
No 196
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.08 E-value=0.099 Score=44.28 Aligned_cols=181 Identities=10% Similarity=0.087 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHH
Q 012126 238 SYRILMQGLCRKSQVNRAVDLLEDMLNKGFV--PDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDI--VHYNTVV 313 (470)
Q Consensus 238 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li 313 (470)
.+-.....+...|++++|++.|+.+....+. --....-.++.++.+.|+++.|...+++..+. -|+. ..+...+
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHH
Confidence 3334556677889999999999999875332 12344556788889999999999999998775 2332 2233333
Q ss_pred HHHHhcCCHhHHHHHHHhchhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 012126 314 LGFCREGRAIDACKVLEDMPSNGCLP---NLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVG 390 (470)
Q Consensus 314 ~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 390 (470)
.+.+..+...... ........ -...+..++.-|=...-..+|...+..+.+. + ...--.+...|.+.|
T Consensus 85 ~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~-l---a~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 85 LGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR-L---AEHELYIARFYYKRG 155 (203)
T ss_dssp HHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-H---HHHHHHHHHHHHCTT
T ss_pred HHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHcc
Confidence 3332211111111 00000000 1123445555555566666676666665442 0 111233567799999
Q ss_pred CHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHcCCcHHHHH
Q 012126 391 KVDEACGVLEELLKAGEAPHE----DTWVMIVPQICAGEEMEKLG 431 (470)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~ 431 (470)
.+..|..-++.+++.= |+. .....++.+|.+.|..+.+.
T Consensus 156 ~y~aA~~r~~~v~~~y--p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENY--PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp -HHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999999998752 332 35677788888888877543
No 197
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.06 E-value=0.0032 Score=42.60 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHh
Q 012126 201 TKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKS-QVNRAVDLLEDMLN 264 (470)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~ 264 (470)
...|..+...+...|++++|+..|++.++.+.. +...|..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344555555555555555555555555554322 4444555555555555 45555555554443
No 198
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.045 Score=47.81 Aligned_cols=102 Identities=19% Similarity=0.184 Sum_probs=71.4
Q ss_pred CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccC-HHHHHHHHHHHHh--cCCChhhHHHHHHHHHHCCCCCCHHH
Q 012126 127 PVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPL-PKQLNRILELLVT--HRNYLRPAFDLFKSAHKHGVLPNTKS 203 (470)
Q Consensus 127 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~ 203 (470)
|.|..-|-.|..+|...|+++.|...|....+. .|+ ...+..+-..++. ......++..+|+++.+.+.. |+.+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHH
Confidence 668888999999999999999999999888762 233 2333333333332 233456788888888876543 6667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 012126 204 YNIMMRAFCFNGDISIAYTLFNKMFERG 231 (470)
Q Consensus 204 ~~~li~~~~~~g~~~~a~~~~~~m~~~~ 231 (470)
...|...+...|++.+|...|+.|.+..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 7777777888888888888888887763
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.95 E-value=0.15 Score=41.15 Aligned_cols=152 Identities=11% Similarity=0.030 Sum_probs=93.3
Q ss_pred HHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 012126 65 VQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESN 144 (470)
Q Consensus 65 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 144 (470)
+.....+.=||+..+.-...-... -|+...-..|..++.+.|+..+|...|.+...--+..+....-.+..+....+
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~---ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~ 138 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAI---APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ 138 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhh---chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc
Confidence 334444444555444333222211 36777777888889999999999999998887766778888888888888889
Q ss_pred CchhHHHHHHHHHhCC---CccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 012126 145 LPDRALKTFRSMLEFN---CKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAY 221 (470)
Q Consensus 145 ~~~~A~~~~~~~~~~~---~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 221 (470)
++..|...++++.+.+ -.||. ..++...+...|....|+.-|+.....- |+...-......+.+.|+.+++.
T Consensus 139 ~~A~a~~tLe~l~e~~pa~r~pd~---~Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 139 EFAAAQQTLEDLMEYNPAFRSPDG---HLLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred cHHHHHHHHHHHhhcCCccCCCCc---hHHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHH
Confidence 9999999998887743 12222 1222222234555666777777666543 33333333334445556555554
Q ss_pred HHH
Q 012126 222 TLF 224 (470)
Q Consensus 222 ~~~ 224 (470)
.-+
T Consensus 214 aq~ 216 (251)
T COG4700 214 AQY 216 (251)
T ss_pred HHH
Confidence 333
No 200
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.92 E-value=0.017 Score=44.26 Aligned_cols=52 Identities=12% Similarity=0.156 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 012126 371 GFSPHFSVSHALIKGFCNVGKVDEACGVLEELLK-AGEAPHEDTWVMIVPQIC 422 (470)
Q Consensus 371 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~ 422 (470)
...|+..+..+++.+|+..|++..|.++.+...+ .+++.+..+|..|++-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4567888888888888888888888888888754 467777888888876443
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.88 E-value=0.023 Score=49.99 Aligned_cols=85 Identities=20% Similarity=0.131 Sum_probs=35.6
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHcCCc
Q 012126 353 DQGMFDVAKKYMQLMISKGFSPH----FSVSHALIKGFCNVGKVDEACGVLEELLKAGE--APHEDTWVMIVPQICAGEE 426 (470)
Q Consensus 353 ~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~ 426 (470)
+.|++++|...|+.+++.. |+ ...+..+..+|...|++++|...|+.+++.-. ......+..+...+...|+
T Consensus 155 ~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~ 232 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD 232 (263)
T ss_pred hcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC
Confidence 3344444444444444431 11 12333444444445555555555554443210 0112233333444444455
Q ss_pred HHHHHHHHHHHHH
Q 012126 427 MEKLGEVLNEIVK 439 (470)
Q Consensus 427 ~~~a~~~~~~m~~ 439 (470)
.++|.++++++++
T Consensus 233 ~~~A~~~~~~vi~ 245 (263)
T PRK10803 233 TAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 202
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.86 E-value=0.38 Score=44.49 Aligned_cols=130 Identities=9% Similarity=0.060 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHhchhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012126 306 IVHYNTVVLGFCREGRAIDACKVLEDMPSNG-CLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIK 384 (470)
Q Consensus 306 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 384 (470)
..+|...++.-.+....+.|..+|-+..+.| +.+++..+++++.-++. |+...|.++|+.-... ++.+....+-.+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 4556677777777777777888888877777 45667777777765554 6677777777755443 2222333345556
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 012126 385 GFCNVGKVDEACGVLEELLKAGEAPH--EDTWVMIVPQICAGEEMEKLGEVLNEIV 438 (470)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 438 (470)
-+...++-+.|..+|+..+++ +..+ ...|..+|.--..-|+...+..+-+.|.
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 666777777777777755443 2222 3467777776666677766665555554
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.75 E-value=0.058 Score=47.47 Aligned_cols=99 Identities=11% Similarity=-0.024 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC--CCHhhHHHH
Q 012126 202 KSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPD--VESYRILMQGLCRKSQVNRAVDLLEDMLNKGFV--PDTLSYTTL 277 (470)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 277 (470)
..|...+..+.+.|++++|...|+.+++..+.-. ...+-.+..+|...|++++|...|+.+.+.-.. .....+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555555566777777777777776533211 245566777777777777777777777654221 122333344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 012126 278 LNSLCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 278 l~~~~~~~~~~~a~~~~~~m~~~ 300 (470)
..++...|+.++|..+|+.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55566677777777777777665
No 204
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.72 Score=45.55 Aligned_cols=312 Identities=13% Similarity=0.119 Sum_probs=163.5
Q ss_pred HHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCc--hhHHHHHHHHHhCCCccCHHHHHHHHHHHHh
Q 012126 100 ILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLP--DRALKTFRSMLEFNCKPLPKQLNRILELLVT 177 (470)
Q Consensus 100 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 177 (470)
.+|..+...+.+..|+++-..+...-.. ...+|......+.+..+. +++++..++=......|. .+|..+-...+
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~-iSy~~iA~~Ay- 518 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPG-ISYAAIARRAY- 518 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCc-eeHHHHHHHHH-
Confidence 3456667777788888777766433211 245666666666665332 233333332222112232 23333333333
Q ss_pred cCCChhhHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-----------CCCCHHHHHHH
Q 012126 178 HRNYLRPAFDLFKSAHKHGVL----PNTKSYNIMMRAFCFNGDISIAYTLFNKMFERG-----------VMPDVESYRIL 242 (470)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----------~~p~~~~~~~l 242 (470)
..|+.+.|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-.+..+- .+.....|.-+
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~ 598 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQF 598 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 455567776666533222111 122234455556666777777666665554331 01111111111
Q ss_pred HH--------HHHHcCChHHHHHHHH--HHHh----CCCCCCHhhHHHHHHHHHhcCCHH----------HHHHHHHHHH
Q 012126 243 MQ--------GLCRKSQVNRAVDLLE--DMLN----KGFVPDTLSYTTLLNSLCRKKKLR----------EAYKLLCRMK 298 (470)
Q Consensus 243 l~--------~~~~~~~~~~a~~~~~--~~~~----~~~~~~~~~~~~ll~~~~~~~~~~----------~a~~~~~~m~ 298 (470)
++ .+...++-.++..-|. .... .|..|+ .....+.+.+..... +-+.+.+.+.
T Consensus 599 ~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le 675 (829)
T KOG2280|consen 599 MRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLE 675 (829)
T ss_pred HHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 11 0111111111111111 0000 111122 222333444433311 1112222222
Q ss_pred H-cCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 012126 299 V-KGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFS 377 (470)
Q Consensus 299 ~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 377 (470)
. .|..-..-+.+--+.-+...|+-.+|.++-.+.+- ||...|-.=+.+++..+++++.+++-+.... +.
T Consensus 676 ~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskks------PI 745 (829)
T KOG2280|consen 676 DQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKKS------PI 745 (829)
T ss_pred HHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CC
Confidence 1 22223334455556667788999999998887753 7888888889999999999988777665432 45
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 012126 378 VSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNE 436 (470)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 436 (470)
-|..++.+|.+.|+.++|.+++-+.-. . .-...+|.+.|++.+|.++.-+
T Consensus 746 Gy~PFVe~c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 746 GYLPFVEACLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred CchhHHHHHHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHHHH
Confidence 678889999999999999998865422 1 1566778888888888776544
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.68 E-value=0.0098 Score=40.70 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=40.1
Q ss_pred HHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 012126 103 LKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEF 159 (470)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 159 (470)
..+.+.++++.|.++++.+...+ |.++..+.....++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34666777777777777777665 556667777777777777777777777777763
No 206
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.54 Score=43.08 Aligned_cols=163 Identities=12% Similarity=0.105 Sum_probs=100.1
Q ss_pred CCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHHcCChHHHHHHHHHHHhCCCCCCHhhHH
Q 012126 199 PNTKSYNIM-MRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQ--GLCRKSQVNRAVDLLEDMLNKGFVPDTLSYT 275 (470)
Q Consensus 199 ~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (470)
|...+|-.+ ..++.-.|++++|.++--...+... ...+...++ ++.-.++.+.++..|++.+..++ +...-.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp--dh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLDP--DHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccCh--hhhhHH
Confidence 334444444 3556677888888877776666542 223333333 34456778888888888776543 322211
Q ss_pred ---HH----------HHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCC
Q 012126 276 ---TL----------LNSLCRKKKLREAYKLLCRMKVK---GCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLP 339 (470)
Q Consensus 276 ---~l----------l~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 339 (470)
.. .+-..+.|++..|.+.+.+.+.. +.+++...|........+.|+.++|+.--++..+.
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i---- 316 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI---- 316 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----
Confidence 11 22345678888888888887654 34445555666666777888888888877776653
Q ss_pred CHH---HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 012126 340 NLV---SYRTLVGGLCDQGMFDVAKKYMQLMISK 370 (470)
Q Consensus 340 ~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~ 370 (470)
|.. .|..-..++...++|++|.+-++...+.
T Consensus 317 D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 317 DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 332 2222234555677888888888887765
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.63 E-value=0.0064 Score=42.32 Aligned_cols=63 Identities=19% Similarity=0.244 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 012126 377 SVSHALIKGFCNVGKVDEACGVLEELLKA----GEA-PH-EDTWVMIVPQICAGEEMEKLGEVLNEIVK 439 (470)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 439 (470)
.+|+.+...|...|++++|+..|++.++. |-. |+ ..++..+..++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35566666666777777777776665432 111 11 33566666677777777777777776653
No 208
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.62 E-value=0.016 Score=46.13 Aligned_cols=67 Identities=21% Similarity=0.297 Sum_probs=31.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 012126 346 TLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELL-----KAGEAPHEDT 413 (470)
Q Consensus 346 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~ 413 (470)
.++..+...|++++|..+...+.... +-+...|..+|.+|...|+..+|.++|+++. +.|+.|+..+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34444555555666666555555542 3345555555666666666666655555543 2255555443
No 209
>PRK15331 chaperone protein SicA; Provisional
Probab=96.60 E-value=0.076 Score=42.20 Aligned_cols=87 Identities=13% Similarity=-0.056 Sum_probs=44.9
Q ss_pred HHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 012126 316 FCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEA 395 (470)
Q Consensus 316 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 395 (470)
+...|++++|..+|.-+.-.+. -+..-|..|..++-..+++++|...|......+. -|+..+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 3455666666666665544322 1333344445555555666666666655544321 2333334445555566666666
Q ss_pred HHHHHHHHH
Q 012126 396 CGVLEELLK 404 (470)
Q Consensus 396 ~~~~~~~~~ 404 (470)
...|+..++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666665554
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.57 E-value=0.012 Score=40.34 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=26.4
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 012126 385 GFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVK 439 (470)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 439 (470)
.|.+.+++++|.++++.++..+.. +...|.....++.+.|++++|.+.++..++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455555555555555543321 333444444555555555555555555553
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.42 Score=40.95 Aligned_cols=158 Identities=12% Similarity=0.045 Sum_probs=112.8
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 012126 215 GDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLL 294 (470)
Q Consensus 215 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 294 (470)
...+...++|++-. ..+.+.++.++.-.|.+.-...++.+..+...+.++.....|.++-.+.||.+.|...|
T Consensus 163 ~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf 235 (366)
T KOG2796|consen 163 LAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYF 235 (366)
T ss_pred cchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHH
Confidence 33456666666533 24556778888888889999999999998877778888899999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHH-----HHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012126 295 CRMKVKGCNPDIVHYNTVV-----LGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMIS 369 (470)
Q Consensus 295 ~~m~~~~~~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 369 (470)
++..+..-+.+..+++.++ ..|.-.+++.+|...+.++...+- -|....|.-.-+..-.|+...|.+.++.|..
T Consensus 236 ~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 236 QDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred HHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9887654444444444443 346667889999999988877542 2444444433344556899999999999988
Q ss_pred CCCCCCHHHHHHH
Q 012126 370 KGFSPHFSVSHAL 382 (470)
Q Consensus 370 ~~~~~~~~~~~~l 382 (470)
. .|...+-+++
T Consensus 315 ~--~P~~~l~es~ 325 (366)
T KOG2796|consen 315 Q--DPRHYLHESV 325 (366)
T ss_pred c--CCccchhhhH
Confidence 5 4554444433
No 212
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.55 E-value=0.035 Score=50.33 Aligned_cols=132 Identities=11% Similarity=-0.005 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH----hCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCC-CCCHH
Q 012126 238 SYRILMQGLCRKSQVNRAVDLLEDML----NKGFV-PDTLSYTTLLNSLCRKKKLREAYKLLCRMKV----KGC-NPDIV 307 (470)
Q Consensus 238 ~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~-~~~~~ 307 (470)
.|..|.+.|.-.|+++.|+...+.-+ +-|-. ....++..+.+++.-.|+++.|.+.|+.-.. .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555555666677777776655432 22211 1234566666777777777777776665422 111 12233
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHhchh----CC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012126 308 HYNTVVLGFCREGRAIDACKVLEDMPS----NG-CLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMIS 369 (470)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~m~~----~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 369 (470)
+..+|.+.|.-..++.+|+.++.+-.. .+ ..-....+-+|..+|...|..++|+.+.+..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 445566666666666777666654221 00 111344566677777777777777776655443
No 213
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.52 E-value=0.018 Score=52.03 Aligned_cols=266 Identities=17% Similarity=0.064 Sum_probs=156.8
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHH--HHHC--CCCC-CHHHHHHHHHHHHH
Q 012126 178 HRNYLRPAFDLFKSAHKHGVLPNTK----SYNIMMRAFCFNGDISIAYTLFNK--MFER--GVMP-DVESYRILMQGLCR 248 (470)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~--m~~~--~~~p-~~~~~~~ll~~~~~ 248 (470)
..|+.+....+|+..++.|.. |.. .|.-|..+|.-.+++++|+++... ...+ |-+. ....-..|.+.+--
T Consensus 29 k~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv 107 (639)
T KOG1130|consen 29 KMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKV 107 (639)
T ss_pred hccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhh
Confidence 556689999999999988854 443 466677788888899999887643 1111 1000 11122223334444
Q ss_pred cCChHHHHHHHHHH----HhCCC-CCCHhhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH----
Q 012126 249 KSQVNRAVDLLEDM----LNKGF-VPDTLSYTTLLNSLCRKKK--------------------LREAYKLLCRMKV---- 299 (470)
Q Consensus 249 ~~~~~~a~~~~~~~----~~~~~-~~~~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~m~~---- 299 (470)
.|.+++|+-.-.+- .+.|- .....++-.+...|...|+ ++.|.+.|.+=.+
T Consensus 108 ~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~ 187 (639)
T KOG1130|consen 108 KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEK 187 (639)
T ss_pred hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666665432221 12221 1123344456666654442 3344444443221
Q ss_pred cCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHhc----hhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----
Q 012126 300 KGC-NPDIVHYNTVVLGFCREGRAIDACKVLEDM----PSNGCL-PNLVSYRTLVGGLCDQGMFDVAKKYMQLMIS---- 369 (470)
Q Consensus 300 ~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---- 369 (470)
.|- -.....|..|.+.|.-.|+++.|+...+.= .+-|-+ .....+..+..++.-.|+++.|.+.|+....
T Consensus 188 lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAie 267 (639)
T KOG1130|consen 188 LGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIE 267 (639)
T ss_pred hhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHH
Confidence 110 011234555666666778899888765542 222211 1234667788888889999999998876543
Q ss_pred CCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcccc
Q 012126 370 KGF-SPHFSVSHALIKGFCNVGKVDEACGVLEELLKA-----GEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVEIK 443 (470)
Q Consensus 370 ~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 443 (470)
.|- ........+|...|.-...+++|+.++.+-+.- +..-....+.+|..+|...|..++|+.+.+.-++....
T Consensus 268 lg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~e 347 (639)
T KOG1130|consen 268 LGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLE 347 (639)
T ss_pred hcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 221 223345567778888888899999888764321 11224568889999999999999999988877665444
Q ss_pred C
Q 012126 444 G 444 (470)
Q Consensus 444 p 444 (470)
.
T Consensus 348 v 348 (639)
T KOG1130|consen 348 V 348 (639)
T ss_pred h
Confidence 3
No 214
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.52 E-value=0.056 Score=41.40 Aligned_cols=99 Identities=14% Similarity=0.039 Sum_probs=64.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHH
Q 012126 270 DTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVG 349 (470)
Q Consensus 270 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 349 (470)
|..++..+|.++++.|+++....+++..-.- ..+.. ...+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI--~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGI--DVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCC--CCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 3456666666777777766666666544322 11110 00000 1123346788999999999
Q ss_pred HHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHc
Q 012126 350 GLCDQGMFDVAKKYMQLMIS-KGFSPHFSVSHALIKGFCN 388 (470)
Q Consensus 350 ~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~ 388 (470)
+|+..|++..|.++++...+ -+++.+..+|..|+.-...
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988876 4677778888888865443
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.49 E-value=0.025 Score=45.07 Aligned_cols=98 Identities=18% Similarity=0.193 Sum_probs=61.4
Q ss_pred HhcCCChHHHHHHHHHhhcC--CCCCCCH------------------HHHHHHHHHHHccCCchHHHHHHHHHhhCCCCC
Q 012126 69 IASQSDPLLAKEIFDYASRQ--PNFRHSN------------------STYLILILKLGRAKYFSLIDDILITLKSEHYPV 128 (470)
Q Consensus 69 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~------------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 128 (470)
....+++..+.+.++.+... +.+-++. .....++..+...|+++.|..+...+.... |.
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~ 94 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD-PY 94 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CC
Confidence 34567888888877776542 1121110 123444555667888888888888888776 77
Q ss_pred CHHHHHHHHHHHHHcCCchhHHHHHHHHHh-----CCCccCHHH
Q 012126 129 TPSLFTYLIKIYAESNLPDRALKTFRSMLE-----FNCKPLPKQ 167 (470)
Q Consensus 129 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 167 (470)
+...|..+|.+|...|+...|++.|+.+.. .|+.|+..+
T Consensus 95 ~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 95 DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 888888888888888888888888887643 466665544
No 216
>PRK15331 chaperone protein SicA; Provisional
Probab=96.32 E-value=0.23 Score=39.58 Aligned_cols=92 Identities=15% Similarity=-0.008 Sum_probs=66.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 012126 207 MMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKK 286 (470)
Q Consensus 207 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 286 (470)
...-+-..|++++|..+|+-+.-.+.- +..-|..|..++-..+++++|+..|......+.. |...+-....+|...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCC
Confidence 334445778888888888887766544 5555667777777888888888888877665543 44445556778888888
Q ss_pred HHHHHHHHHHHHHc
Q 012126 287 LREAYKLLCRMKVK 300 (470)
Q Consensus 287 ~~~a~~~~~~m~~~ 300 (470)
.+.|...|+...+.
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888887763
No 217
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.31 E-value=0.98 Score=43.89 Aligned_cols=88 Identities=11% Similarity=0.055 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHH---------
Q 012126 272 LSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLV--------- 342 (470)
Q Consensus 272 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--------- 342 (470)
.+...+...+.+...+..|-++|..|-+. ..+++.....+++++|+.+-+...+. .||+.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAE 816 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhh
Confidence 34444444455566677777777776532 24566677778888888777766552 33322
Q ss_pred --HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 012126 343 --SYRTLVGGLCDQGMFDVAKKYMQLMISK 370 (470)
Q Consensus 343 --~~~~li~~~~~~g~~~~a~~~~~~~~~~ 370 (470)
-|...-.+|.+.|+-.+|..+++++...
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1233335667777777777777776543
No 218
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.19 E-value=1 Score=41.54 Aligned_cols=169 Identities=15% Similarity=0.041 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHH
Q 012126 235 DVESYRILMQGLCRKSQVNRAVDLLEDMLNKG---FVPDTLSYTTLLNSLCR---KKKLREAYKLLCRMKVKGCNPDIVH 308 (470)
Q Consensus 235 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~ 308 (470)
+..+...++-+|....+++..+++.+.+.... +.-....--...-++.+ .|+.++|++++..+......++..+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34444456667889999999999999987652 11122222233445556 7899999999998666666778888
Q ss_pred HHHHHHHHHh----c-----CCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC-h---HHHHHHHH----HHHHCC
Q 012126 309 YNTVVLGFCR----E-----GRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGM-F---DVAKKYMQ----LMISKG 371 (470)
Q Consensus 309 ~~~li~~~~~----~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~---~~a~~~~~----~~~~~~ 371 (470)
|..+.+.|-. . ...++|+..|.+.-+. .||...--.++..+.-.|. . .+..++-- .+.++|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 8888777632 1 2255666666655443 2443221111222222222 1 12233321 111222
Q ss_pred CC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 012126 372 FS---PHFSVSHALIKGFCNVGKVDEACGVLEELLKA 405 (470)
Q Consensus 372 ~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (470)
.. .+--.+..++.++.-.|+.++|.+..++|.+.
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 21 22233445566666666666666666666654
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.19 E-value=0.016 Score=40.22 Aligned_cols=63 Identities=21% Similarity=0.307 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 012126 342 VSYRTLVGGLCDQGMFDVAKKYMQLMISK----GF-SPH-FSVSHALIKGFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (470)
.+|+.+...|...|++++|+..+++.++. |- .|+ ..+++.+..+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34556666666666666666666665542 11 111 34566666777777777777777776543
No 220
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.97 E-value=2.6 Score=44.23 Aligned_cols=100 Identities=17% Similarity=0.158 Sum_probs=54.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHH--HHHHHHHHHhcCChHHH
Q 012126 283 RKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVS--YRTLVGGLCDQGMFDVA 360 (470)
Q Consensus 283 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a 360 (470)
....+++|.-.|+..-+. .-.+.+|..+|++.+|+.+..++... -+... -..|+.-+...++.-+|
T Consensus 951 ~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eA 1018 (1265)
T KOG1920|consen 951 EELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEA 1018 (1265)
T ss_pred HhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhH
Confidence 345555555555543221 12455666667777776666665432 12221 14456666667777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 012126 361 KKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEEL 402 (470)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 402 (470)
-++..+.... | .-.+..|++...+++|..+....
T Consensus 1019 a~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1019 AKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 7776665442 1 22334456666777777665544
No 221
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.96 E-value=0.083 Score=45.53 Aligned_cols=88 Identities=18% Similarity=0.182 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC----------------ChHHHH
Q 012126 303 NPDIVHYNTVVLGFCRE-----GRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQG----------------MFDVAK 361 (470)
Q Consensus 303 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----------------~~~~a~ 361 (470)
+-|..+|-+.+..|... +.++=....++.|.+.|+.-|..+|+.|+..+-+.. +-+.++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 44667777777766543 445555666677777777778888887777654321 123445
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 012126 362 KYMQLMISKGFSPHFSVSHALIKGFCNVG 390 (470)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g 390 (470)
+++++|...|+.||..+-..|+.+|.+.|
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 55555555555555555555555555444
No 222
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.86 E-value=0.42 Score=45.64 Aligned_cols=158 Identities=13% Similarity=0.119 Sum_probs=87.5
Q ss_pred HHHHhcCChhHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 012126 209 RAFCFNGDISIAYTLFNKM-FERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKL 287 (470)
Q Consensus 209 ~~~~~~g~~~~a~~~~~~m-~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 287 (470)
+...-.|+++.+.++.+.- .-..+ +..-.+.++..+.+.|..+.|+++-.+-. .-.+...++|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 3344567777766655411 11111 24446667777777777777776553311 123445567777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 012126 288 REAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLM 367 (470)
Q Consensus 288 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 367 (470)
+.|.++-++.. +...|..|.....+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+...++.+..
T Consensus 335 ~~A~~~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 77776654432 566777777777777888877777777654 445555666777777777777666
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 012126 368 ISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEE 401 (470)
Q Consensus 368 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 401 (470)
...|- ++....++...|++++..+++.+
T Consensus 400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 400 EERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 66541 34444555556777777766654
No 223
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.83 E-value=1.7 Score=41.10 Aligned_cols=58 Identities=12% Similarity=0.063 Sum_probs=31.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012126 206 IMMRAFCFNGDISIAYTLFNKMFERGVMP-DVESYRILMQGLCRKSQVNRAVDLLEDML 263 (470)
Q Consensus 206 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 263 (470)
.+..++.+.|+.++|.+.|++|.+..... .......|+.++...+.+.++..++.+..
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34444455566666666666665442221 22344556666666666666666666543
No 224
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.81 E-value=1.5 Score=40.09 Aligned_cols=307 Identities=19% Similarity=0.109 Sum_probs=173.7
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH--ccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHH--HHcCCchhHH
Q 012126 75 PLLAKEIFDYASRQPNFRHSNSTYLILILKLG--RAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIY--AESNLPDRAL 150 (470)
Q Consensus 75 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~ 150 (470)
+..+...|+.-.+..+ |..|-..++ -.|+-..|.++-.+..+. +..|......|+.+- .-.|+.+.|.
T Consensus 69 P~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 69 PYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred cHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHH
Confidence 4445555554443333 444444333 357777777776654322 122333344444433 3469999999
Q ss_pred HHHHHHHhCCCccCHHHHHHHHHHHH---hcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 012126 151 KTFRSMLEFNCKPLPKQLNRILELLV---THRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKM 227 (470)
Q Consensus 151 ~~~~~~~~~~~~p~~~~~~~ll~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 227 (470)
+-|+.|.. |+.+-..=|..++ +..|..+.|..+-+..-..-.. -...+..++...|..|+++.|+++++.-
T Consensus 141 ~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 141 KKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred HHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 99999886 3333322233322 3556667777776666554322 3466778888888999999999988876
Q ss_pred HHCC-CCCCHHH--HHHHHHHHH---HcCChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012126 228 FERG-VMPDVES--YRILMQGLC---RKSQVNRAVDLLEDMLNKGFVPDTL-SYTTLLNSLCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 228 ~~~~-~~p~~~~--~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 300 (470)
.... +.+++.- -..|+.+-. -.-+...|...-.+..+. .||-. .-.....++.+.|+..++-.+++.+-+.
T Consensus 215 ~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 215 RAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 5432 2333221 122332211 123455555555554443 33322 1223346677888888888888888877
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 012126 301 GCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSN-GCLP-NLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSV 378 (470)
Q Consensus 301 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 378 (470)
.|.+..+... .+.+.|+ .++.-++..... .++| +......+..+-...|++..|..--+...+ ..|....
T Consensus 293 --ePHP~ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~ 364 (531)
T COG3898 293 --EPHPDIALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESA 364 (531)
T ss_pred --CCChHHHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhH
Confidence 4444433222 2334444 333333322211 1233 455666677777788888877776666655 3677777
Q ss_pred HHHHHHHHH-ccCCHHHHHHHHHHHHHC
Q 012126 379 SHALIKGFC-NVGKVDEACGVLEELLKA 405 (470)
Q Consensus 379 ~~~li~~~~-~~g~~~~a~~~~~~~~~~ 405 (470)
|..|.+.-. ..|+-.++...+.+.++.
T Consensus 365 ~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 365 YLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 777766544 348888888888777764
No 225
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.80 E-value=0.21 Score=43.20 Aligned_cols=46 Identities=28% Similarity=0.286 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHH
Q 012126 218 SIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQV-NRAVDLLEDML 263 (470)
Q Consensus 218 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~ 263 (470)
+-+++++++|...|+.||-.+-..+++++.+.+-. .+..++.-.|.
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 45688889999999999999988899888877653 33444444443
No 226
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=1.6 Score=40.19 Aligned_cols=258 Identities=12% Similarity=-0.028 Sum_probs=149.1
Q ss_pred HhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhC--CC-----CCC--HHHHHHHHHH
Q 012126 69 IASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSE--HY-----PVT--PSLFTYLIKI 139 (470)
Q Consensus 69 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~-----~~~--~~~~~~li~~ 139 (470)
+-++.++..|+..+..+.... +.+..-|..-...+.-.++|+++.--.+.-.+. |+ .++ -.....+|.+
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 344567778888888776543 233444444444455555565555443333222 11 000 0111123333
Q ss_pred HHHcCC-----chhHHHHHHHHHhCC-CccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 012126 140 YAESNL-----PDRALKTFRSMLEFN-CKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCF 213 (470)
Q Consensus 140 ~~~~g~-----~~~A~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 213 (470)
.....+ ...|+..++.+.... -.|.-..+..+-..|+...+++++|.++-...++.+.. +......=..++--
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy 215 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYY 215 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhccccccc
Confidence 222211 112222233322222 23444566666666777788899999888888876422 33222222234446
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHH-------------HHHHHHHHHHcCChHHHHHHHHHHHhCC---CCCCHhhHHHH
Q 012126 214 NGDISIAYTLFNKMFERGVMPDVES-------------YRILMQGLCRKSQVNRAVDLLEDMLNKG---FVPDTLSYTTL 277 (470)
Q Consensus 214 ~g~~~~a~~~~~~m~~~~~~p~~~~-------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l 277 (470)
.++.+.+...|++.+..++ +... +..=.+-..+.|++..|.+.|.+.+... ..++...|...
T Consensus 216 ~~~~~ka~~hf~qal~ldp--dh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRLDP--DHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccchHHHHHHHhhhhccCh--hhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 7888999999988876642 3222 1122334567899999999999988653 45566677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HH--HHHHHHHhcCCHhHHHHHHHhchhC
Q 012126 278 LNSLCRKKKLREAYKLLCRMKVKGCNPDIVH-YN--TVVLGFCREGRAIDACKVLEDMPSN 335 (470)
Q Consensus 278 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~--~li~~~~~~~~~~~a~~~~~~m~~~ 335 (470)
..+..+.|+.++|+.--++..+. |..- .. .-..++...+++++|.+-++...+.
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77888999999999988888765 3322 22 2233455667888888888887664
No 227
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.77 E-value=0.61 Score=35.43 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=23.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 012126 347 LVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAG 406 (470)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (470)
.+......|.-+...+++.++.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3444444444444444444444321 3344444444444444444444444444444444
No 228
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.75 E-value=0.73 Score=36.22 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=14.0
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 012126 246 LCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLC 282 (470)
Q Consensus 246 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 282 (470)
+...+.......+++.+...+. .+....+.++..|+
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~ 52 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYA 52 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHH
Confidence 3333344444444444433332 23333444444443
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.72 E-value=0.18 Score=47.07 Aligned_cols=63 Identities=16% Similarity=0.092 Sum_probs=38.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHhchh
Q 012126 270 DTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDI----VHYNTVVLGFCREGRAIDACKVLEDMPS 334 (470)
Q Consensus 270 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~ 334 (470)
+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666666666666666666666666554 3442 2356666666666666666666666655
No 230
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.69 E-value=1.6 Score=39.78 Aligned_cols=289 Identities=16% Similarity=0.112 Sum_probs=181.3
Q ss_pred HcCCchhHHHHHHHHHhCCCccCHHHHHHHHHH-HHhcCCChhhHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChh
Q 012126 142 ESNLPDRALKTFRSMLEFNCKPLPKQLNRILEL-LVTHRNYLRPAFDLFKSAHKHGVLPNTKS--YNIMMRAFCFNGDIS 218 (470)
Q Consensus 142 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~ 218 (470)
-.|+-..|.++-.+.... +..|...+..+|.+ .....|+++.|.+-|+.|... |.... ...|.-.--+.|..+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence 356777777766554321 22344444444443 233567899999999999863 32221 122222334678889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHh--hHHHHHHHHHh---cCCHHHHHH
Q 012126 219 IAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKG-FVPDTL--SYTTLLNSLCR---KKKLREAYK 292 (470)
Q Consensus 219 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~ll~~~~~---~~~~~~a~~ 292 (470)
.|..+-++.-+.-.. -...+...+...+..|+++.|+++++.-.... +.++.. .-..|+.+-.. ..+...|..
T Consensus 172 aAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 998888887665433 34566788899999999999999998766543 233332 22233332221 234556666
Q ss_pred HHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-
Q 012126 293 LLCRMKVKGCNPDIVHYN-TVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISK- 370 (470)
Q Consensus 293 ~~~~m~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~- 370 (470)
.-.+..+. .|+.+--. .-..++.+.|+..++-.+++.+-+....|+ .+. +..+.+.|+ .+..-++...+.
T Consensus 251 ~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gd--ta~dRlkRa~~L~ 322 (531)
T COG3898 251 DALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGD--TALDRLKRAKKLE 322 (531)
T ss_pred HHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCC--cHHHHHHHHHHHH
Confidence 55555443 55543322 234678999999999999999988754454 222 222344454 444444444331
Q ss_pred CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHccccCC
Q 012126 371 GFSPH-FSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICA-GEEMEKLGEVLNEIVKVEIKGD 445 (470)
Q Consensus 371 ~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~~~~p~ 445 (470)
.++|| ......+..+-...|++..|..--+...+ ..|....|..|.+.-.. .||-.++...+.+.++.--.|+
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 23444 44556667777888999988887777766 45888899888876654 4999999999999987644443
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.67 E-value=0.76 Score=44.53 Aligned_cols=177 Identities=15% Similarity=0.097 Sum_probs=115.7
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCH------HHHHHHHHHHHhc---CCChhhHHH
Q 012126 117 ILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLP------KQLNRILELLVTH---RNYLRPAFD 187 (470)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~ll~~~~~~---~~~~~~a~~ 187 (470)
+|..+... +||. +..++....=.|+-+.+++.+.+..+.+-.-.+ -.|+..+..++.. ....+.|.+
T Consensus 179 ~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~ 254 (468)
T PF10300_consen 179 LFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE 254 (468)
T ss_pred HHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH
Confidence 45555443 3433 566777777778888888888776553211111 2234444444433 556889999
Q ss_pred HHHHHHHCCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012126 188 LFKSAHKHGVLPNTKSYNIM-MRAFCFNGDISIAYTLFNKMFERG---VMPDVESYRILMQGLCRKSQVNRAVDLLEDML 263 (470)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 263 (470)
+++.+.+.- |+...|... .+.+...|++++|++.|++..... .+.....+--+.-++.-..++++|.+.|..+.
T Consensus 255 lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 255 LLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 999998753 677666554 477788999999999999765421 12234455566777888999999999999998
Q ss_pred hCCCCCCHhhHHHHHH-HHHhcCCH-------HHHHHHHHHHHHc
Q 012126 264 NKGFVPDTLSYTTLLN-SLCRKKKL-------REAYKLLCRMKVK 300 (470)
Q Consensus 264 ~~~~~~~~~~~~~ll~-~~~~~~~~-------~~a~~~~~~m~~~ 300 (470)
+..-- +..+|.-+.. ++...|+. ++|.++|.+....
T Consensus 333 ~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 333 KESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 86422 4444544433 34456777 8999999887543
No 232
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.66 E-value=1.8 Score=40.01 Aligned_cols=83 Identities=11% Similarity=0.231 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHcCCchhHHHHHHHHHhCC-C-ccCHHHHHHHHHHHHhc---CCChhhHHHHHHHHHHCCCCCCHHH
Q 012126 129 TPSLFTYLIKIYAESNLPDRALKTFRSMLEFN-C-KPLPKQLNRILELLVTH---RNYLRPAFDLFKSAHKHGVLPNTKS 203 (470)
Q Consensus 129 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~-~p~~~~~~~ll~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~ 203 (470)
++.+...++-.|-...+++.-+++++.+.... + .++.............. .|+.++|++++..+......++..+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34444555666777778888888887776531 0 12222222222222223 4566777777777554444456666
Q ss_pred HHHHHHHH
Q 012126 204 YNIMMRAF 211 (470)
Q Consensus 204 ~~~li~~~ 211 (470)
|..+.+.|
T Consensus 220 ~gL~GRIy 227 (374)
T PF13281_consen 220 LGLLGRIY 227 (374)
T ss_pred HHHHHHHH
Confidence 66666554
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.64 E-value=0.11 Score=48.58 Aligned_cols=100 Identities=12% Similarity=0.005 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 012126 340 NLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHF----SVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWV 415 (470)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 415 (470)
+...++.+..+|.+.|++++|+..|++.++. .|+. ..|..+..+|...|++++|++.+++.++.+ .+ .|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHH
Confidence 5678899999999999999999999999885 4553 358899999999999999999999998852 11 222
Q ss_pred HHHH--HHHcCCcHHHHHHHHHHHHHccccCC
Q 012126 416 MIVP--QICAGEEMEKLGEVLNEIVKVEIKGD 445 (470)
Q Consensus 416 ~l~~--~~~~~g~~~~a~~~~~~m~~~~~~p~ 445 (470)
.+.. .+..-.+.++..++++++.+-|....
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~~~g 179 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGEDIG 179 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCCccC
Confidence 1111 11222344577778888877765443
No 234
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.60 E-value=2 Score=40.13 Aligned_cols=339 Identities=17% Similarity=0.103 Sum_probs=184.9
Q ss_pred hcCCChHHHHHHHHHhhcC-CCCCC---C--------HHHH-HHHHHHHHccCCchHHHHHHHHHhhCCCC----CCHHH
Q 012126 70 ASQSDPLLAKEIFDYASRQ-PNFRH---S--------NSTY-LILILKLGRAKYFSLIDDILITLKSEHYP----VTPSL 132 (470)
Q Consensus 70 ~~~~~~~~a~~~~~~~~~~-~~~~~---~--------~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~ 132 (470)
-+.+.++.|++.+..-..+ .+..+ + ...+ +..++.++..|++.+++.+++++...-++ -+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 4688899999987744332 11111 1 1112 34567889999999999999988766443 57888
Q ss_pred HHHHHHHHHHc--------CCchhHHHHH-------HHHHhC------CCccCHHHHHHHHHHHHhcC-CChhhHHHHHH
Q 012126 133 FTYLIKIYAES--------NLPDRALKTF-------RSMLEF------NCKPLPKQLNRILELLVTHR-NYLRPAFDLFK 190 (470)
Q Consensus 133 ~~~li~~~~~~--------g~~~~A~~~~-------~~~~~~------~~~p~~~~~~~ll~~~~~~~-~~~~~a~~~~~ 190 (470)
|+.++-.++++ ...+-+.+.| +++... .+.|.......++..+.... ....--.++++
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 88866665543 1222222222 222211 23444444455554443221 12333444555
Q ss_pred HHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012126 191 SAHKHGVLPNTK-SYNIMMRAFCFNGDISIAYTLFNKMFERGVMP----DVESYRILMQGLCRKSQVNRAVDLLEDMLNK 265 (470)
Q Consensus 191 ~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 265 (470)
...+.-+.|+.. +...|...+.. +.+++..+-+.+....+.+ =..+|..++....+.++...|.+.+.-+.-.
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 444444445432 22333333333 4444444443332221110 2345666677777777777777666555432
Q ss_pred CCCC-------------------CHhhHH------------------------HHHHH---HHhcCC-HHHHHHHHHHHH
Q 012126 266 GFVP-------------------DTLSYT------------------------TLLNS---LCRKKK-LREAYKLLCRMK 298 (470)
Q Consensus 266 ~~~~-------------------~~~~~~------------------------~ll~~---~~~~~~-~~~a~~~~~~m~ 298 (470)
.+.. |...++ -|+.. +-+.|. -++|+++++.+.
T Consensus 328 dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il 407 (549)
T PF07079_consen 328 DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLIL 407 (549)
T ss_pred CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 1110 111111 11111 122333 667777777776
Q ss_pred HcCCCCCHHHHHHHH----HHHHh---cCCHhHHHHHHHhchhCCCCCCH----HHHHHHHHH--HHhcCChHHHHHHHH
Q 012126 299 VKGCNPDIVHYNTVV----LGFCR---EGRAIDACKVLEDMPSNGCLPNL----VSYRTLVGG--LCDQGMFDVAKKYMQ 365 (470)
Q Consensus 299 ~~~~~~~~~~~~~li----~~~~~---~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~--~~~~g~~~~a~~~~~ 365 (470)
+.. .-|...-|.+. ..|.+ ...+.+-+.+-+-+.+.|+.|-. ..-|.|.+| +...|++.++.-.-.
T Consensus 408 ~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~ 486 (549)
T PF07079_consen 408 QFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSS 486 (549)
T ss_pred Hhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 541 12333222222 23322 23345555565666677877633 344445443 456899999887766
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012126 366 LMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIV 418 (470)
Q Consensus 366 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 418 (470)
.+.+ +.|++.+|..+.-+.....++++|..++.. ++|+..++++=+
T Consensus 487 WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~dskv 532 (549)
T PF07079_consen 487 WLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDSKV 532 (549)
T ss_pred HHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHHHH
Confidence 6666 689999999999999999999999999976 456777776543
No 235
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.59 E-value=2.6 Score=41.50 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=14.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHh
Q 012126 243 MQGLCRKSQVNRAVDLLEDMLN 264 (470)
Q Consensus 243 l~~~~~~~~~~~a~~~~~~~~~ 264 (470)
|..+.+.|..-.|-+++.+|.+
T Consensus 930 Ie~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 930 IEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHhhhcccchhHHHHHHHHhH
Confidence 4556667776666666666654
No 236
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.55 E-value=1 Score=36.36 Aligned_cols=135 Identities=16% Similarity=0.225 Sum_probs=83.2
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHC
Q 012126 116 DILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKH 195 (470)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 195 (470)
+.++.+...++++++..+..+++.+.+.|++... ..++..++-+|.......+-.+. +....+.++=-+|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~---~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG---NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH---ccChHHHHHHHHHHHH
Confidence 4455566778889999999999999999986554 44555566677666655553332 2233344444444331
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012126 196 GVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNK 265 (470)
Q Consensus 196 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 265 (470)
=...+..++..+...|++-+|.++.+..... +...-..++.+..+.+|...-..+|+-..+.
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0113556777888889998888888765332 2223345666666777766655555555543
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.43 E-value=0.76 Score=43.90 Aligned_cols=160 Identities=10% Similarity=0.035 Sum_probs=107.2
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHh
Q 012126 244 QGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAI 323 (470)
Q Consensus 244 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 323 (470)
+...-.++++.+.++.+.-.-.. ..+..-.+.++..+-+.|-.+.|+++...-.. -.....+.|+.+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHH
Confidence 44456788888777765211010 11245578889999999999999987655322 234456899999
Q ss_pred HHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 012126 324 DACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELL 403 (470)
Q Consensus 324 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 403 (470)
.|.++.++.. +...|..|.......|+++-|++.+.+..+ +..|+-.|.-.|+.+.-.++.+...
T Consensus 336 ~A~~~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 9998876643 677999999999999999999999987643 5667777888999988888888777
Q ss_pred HCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 012126 404 KAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEI 437 (470)
Q Consensus 404 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 437 (470)
..|- ++....++.-.|+.++..+++.+.
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 7652 455556666778888888877654
No 238
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.41 E-value=0.85 Score=34.68 Aligned_cols=63 Identities=11% Similarity=0.089 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 012126 309 YNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGF 372 (470)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 372 (470)
....+..+...|+-+...+++.++.+ +-.++......+..+|.+.|+..++..++.++-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 44455666667777777777777654 2356666667777777777777777777777776664
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.36 E-value=0.68 Score=44.84 Aligned_cols=165 Identities=15% Similarity=0.112 Sum_probs=93.3
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCH------HHHHHHHHHHHH----cCCchhHHHHHHHHHhCCCccCHH
Q 012126 97 TYLILILKLGRAKYFSLIDDILITLKSEHYPVTP------SLFTYLIKIYAE----SNLPDRALKTFRSMLEFNCKPLPK 166 (470)
Q Consensus 97 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~ 166 (470)
.+..+++..+=.|+-+.+.+.+....+.+--..+ -.|+..+..++. ....+.|.+++..+.+ .-|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcH
Confidence 3455555555556666666665555443211111 112222222221 2344567777777666 346666
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012126 167 QLNRILELLVTHRNYLRPAFDLFKSAHKHG---VLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILM 243 (470)
Q Consensus 167 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 243 (470)
.|...-..+....|+.++|.+.|++..... .+.....+--+.-.+.-.+++++|.+.|..+.+.+-- +..+|.-+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHH
Confidence 776666666666777777777777544211 1123344455666677888899998888888876322 334443333
Q ss_pred -HHHHHcCCh-------HHHHHHHHHHHh
Q 012126 244 -QGLCRKSQV-------NRAVDLLEDMLN 264 (470)
Q Consensus 244 -~~~~~~~~~-------~~a~~~~~~~~~ 264 (470)
.++...++. ++|.++|.+...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 334456666 888888887654
No 240
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.32 E-value=1.2 Score=35.76 Aligned_cols=133 Identities=14% Similarity=0.135 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHH-HHHHH--
Q 012126 131 SLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTK-SYNIM-- 207 (470)
Q Consensus 131 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l-- 207 (470)
..|..-+. .+..+..++|+.-|..+.+.|...-+.....-...+....|+...|...|+++-.....|-.. -...|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444333 345566677777777776655443333333333334445555666666666655443323221 11111
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012126 208 MRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLN 264 (470)
Q Consensus 208 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 264 (470)
.-.+...|.++.+..-.+-+-..+-+.....-..|.-+-.+.|++.+|.+.|..+..
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 112334555555555554444333322333334444445555666666666655544
No 241
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.18 E-value=1.2 Score=35.00 Aligned_cols=125 Identities=9% Similarity=0.067 Sum_probs=73.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 012126 205 NIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRK 284 (470)
Q Consensus 205 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 284 (470)
..++..+...+.......+++.+...+. .+...++.++..|++.+ ..+.++.+.. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 4556666667777788888887777763 46677777888877653 3444444442 12334445566777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 012126 285 KKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCRE-GRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLC 352 (470)
Q Consensus 285 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 352 (470)
+-++++..++.++... ...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~~---------~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGNF---------KDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcCH---------HHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 7777777777665321 1223333333 6677777666651 14456666665554
No 242
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.08 E-value=2 Score=37.04 Aligned_cols=71 Identities=13% Similarity=0.113 Sum_probs=40.2
Q ss_pred HhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 012126 212 CFNGDISIAYTLFNKMFERGV--MPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLC 282 (470)
Q Consensus 212 ~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 282 (470)
.+.|++++|.+.|+.+..+.+ +-...+.-.++.++.+.++++.|+...++....-+......|..-|.+++
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 466777777777777765421 11344455556666677777777777777665543323334444444433
No 243
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.95 E-value=2.2 Score=36.81 Aligned_cols=183 Identities=14% Similarity=0.180 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 012126 165 PKQLNRILELLVTHRNYLRPAFDLFKSAHKHGV--LPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRIL 242 (470)
Q Consensus 165 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 242 (470)
...|+..+..+ ..|++++|.+.|+.+....+ +-...+--.++.++-+.++++.|...+++....-+.-...-|...
T Consensus 35 ~~LY~~g~~~L--~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 35 SELYNEGLTEL--QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 34445444444 45667888888887775432 113455666778888999999999999998876544444555555
Q ss_pred HHHHHHc-------CChHH---HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 012126 243 MQGLCRK-------SQVNR---AVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTV 312 (470)
Q Consensus 243 l~~~~~~-------~~~~~---a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 312 (470)
|.+.+.. .|... |+.-|+++++. -|| ..=...|...+..+... =...=-.+
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPn-------------S~Ya~dA~~~i~~~~d~----LA~~Em~I 173 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPN-------------SRYAPDAKARIVKLNDA----LAGHEMAI 173 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCC-------------CcchhhHHHHHHHHHHH----HHHHHHHH
Confidence 5555532 22222 22222333222 111 11111222222111110 00001124
Q ss_pred HHHHHhcCCHhHHHHHHHhchhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012126 313 VLGFCREGRAIDACKVLEDMPSNGCLPN---LVSYRTLVGGLCDQGMFDVAKKYMQLMIS 369 (470)
Q Consensus 313 i~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 369 (470)
.+-|.+.|.+..|..-+++|.+. .+-+ ...+-.+..+|...|-.++|.+.-.-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 45567777777777777777665 2212 23444555667777777776665554433
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.93 E-value=0.5 Score=40.96 Aligned_cols=59 Identities=12% Similarity=0.165 Sum_probs=25.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 012126 381 ALIKGFCNVGKVDEACGVLEELLKAG--EAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVK 439 (470)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 439 (470)
-|..++...|++++|..+|..+.+.- -+.-+..+..|..+..+.|+.++|..+|+++.+
T Consensus 183 WLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 183 WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34444444555555555544443321 011123444444444455555555555555443
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.83 E-value=1.2 Score=38.62 Aligned_cols=97 Identities=15% Similarity=0.101 Sum_probs=72.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 012126 63 CRVQKLIASQSDPLLAKEIFDYASRQ-PNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEH--YPVTPSLFTYLIKI 139 (470)
Q Consensus 63 ~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~ 139 (470)
....--+...|++..|.+.|....+. |+-...+..+-.|...+...|+++.|..+|..+.+.- .+--++.+-.|..+
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~ 224 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS 224 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 33344455677899999988877643 3334456678888899999999999999998887762 12235677778888
Q ss_pred HHHcCCchhHHHHHHHHHhC
Q 012126 140 YAESNLPDRALKTFRSMLEF 159 (470)
Q Consensus 140 ~~~~g~~~~A~~~~~~~~~~ 159 (470)
..+.|+.++|..+|+++.+.
T Consensus 225 ~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 225 LGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 88899999999999988874
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=2.6 Score=37.08 Aligned_cols=121 Identities=15% Similarity=0.088 Sum_probs=56.6
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 012126 211 FCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREA 290 (470)
Q Consensus 211 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 290 (470)
....|++.+|..+|+........ +...-..+..+|...|+.+.|..++..+....-.........-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34556666666666665554333 33444455666666666666666665554332111112212223333333333333
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchh
Q 012126 291 YKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPS 334 (470)
Q Consensus 291 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 334 (470)
..+-.+.-.. +-|...-..+...+...|+.++|++.+-.+.+
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333333322 11344444455555666666666655544443
No 247
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.73 E-value=5.1 Score=40.00 Aligned_cols=317 Identities=11% Similarity=0.064 Sum_probs=176.3
Q ss_pred HccCCchHHHHHHHHH--------hhCCCCCCHHHHHH-----HHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHH
Q 012126 106 GRAKYFSLIDDILITL--------KSEHYPVTPSLFTY-----LIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRIL 172 (470)
Q Consensus 106 ~~~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 172 (470)
.+..++++-..+.+.+ ...|+|.+..-|.. +|+.+...+.+..|+++-..+-..-..- ...+....
T Consensus 400 l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa 478 (829)
T KOG2280|consen 400 LRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWA 478 (829)
T ss_pred cccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHH
Confidence 3445555555444433 33477777766665 6777888899999999887765421111 33333333
Q ss_pred HHHHhcCC-ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHH
Q 012126 173 ELLVTHRN-YLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGV----MPDVESYRILMQGLC 247 (470)
Q Consensus 173 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~p~~~~~~~ll~~~~ 247 (470)
....+... .-+++.+..++-.+... .....|..+.+-.-.+|+.+.|..+++.=...+. -.+..-+...+.-+.
T Consensus 479 ~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kai 557 (829)
T KOG2280|consen 479 RRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAI 557 (829)
T ss_pred HHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHH
Confidence 33333211 11233333333222222 3456677777777789999999988865333221 112233455666677
Q ss_pred HcCChHHHHHHHHHHHhCCC-----------CCCHhhHHHHHH---------HHHhcCCHHHHHHHH--HHHHH----cC
Q 012126 248 RKSQVNRAVDLLEDMLNKGF-----------VPDTLSYTTLLN---------SLCRKKKLREAYKLL--CRMKV----KG 301 (470)
Q Consensus 248 ~~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~ll~---------~~~~~~~~~~a~~~~--~~m~~----~~ 301 (470)
..|+.+-...++..+.+.-. ......|.-+++ .|- .++-.++...| +.... .|
T Consensus 558 es~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~ 636 (829)
T KOG2280|consen 558 ESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYN-QDDNHQALASFHLQASYAAETIEG 636 (829)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhh-cccchhhhhhhhhhhhhhhhhhcc
Confidence 88888888887777654310 001111111111 111 11111111111 11000 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCH----------hHHHHHHHhchh-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 012126 302 CNPDIVHYNTVVLGFCREGRA----------IDACKVLEDMPS-NGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISK 370 (470)
Q Consensus 302 ~~~~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 370 (470)
..|+ .......|.+.... .+-+.+.+.+.. .|......+.+--+.-+...|+..+|.++-.+.+
T Consensus 637 r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-- 711 (829)
T KOG2280|consen 637 RIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-- 711 (829)
T ss_pred cchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC--
Confidence 2222 22233344443331 111222222222 1333444556666777788899999988877653
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 012126 371 GFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIV 438 (470)
Q Consensus 371 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 438 (470)
-||-..|..-+.+++..+++++-+++-+.+. .+.-|.-.+.+|.+.|+.++|.+++...-
T Consensus 712 --ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 712 --IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred --CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 5788899999999999999998777665542 35667788899999999999999987764
No 248
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.73 E-value=1.5 Score=34.08 Aligned_cols=72 Identities=10% Similarity=0.066 Sum_probs=40.3
Q ss_pred HHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 012126 210 AFCFNGDISIAYTLFNKMFERGV--MPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSL 281 (470)
Q Consensus 210 ~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 281 (470)
...+.|++++|.+.|+.+..+-+ +-....--.++.+|.+.+++++|...+++.++..+.-...-|...+.++
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 33466777777777776665521 1123444456666777777777777777766655433333444444443
No 249
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.69 E-value=2.4 Score=36.08 Aligned_cols=95 Identities=22% Similarity=0.124 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH-
Q 012126 202 KSYNIMMRAFCFNGDISIAYTLFNKMFER-GVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLN- 279 (470)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~- 279 (470)
..+......+...+.+..+...+...... ........+......+...+++..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444555555555555555555554431 122233444444444555555555555555554433221 111111112
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 012126 280 SLCRKKKLREAYKLLCRM 297 (470)
Q Consensus 280 ~~~~~~~~~~a~~~~~~m 297 (470)
.+...|+++.+...+.+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~ 156 (291)
T COG0457 139 ALYELGDYEEALELYEKA 156 (291)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 344455555555555554
No 250
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.53 Score=43.09 Aligned_cols=125 Identities=14% Similarity=0.070 Sum_probs=82.6
Q ss_pred HHHhcCCChHHHHHHHHHhhc----CCCCCCC---------HHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHH
Q 012126 67 KLIASQSDPLLAKEIFDYASR----QPNFRHS---------NSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLF 133 (470)
Q Consensus 67 ~~~~~~~~~~~a~~~~~~~~~----~~~~~~~---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 133 (470)
..+-+.|++..|..-|+.+.. ..++++. ...+..+.-.+.+.+++..|.+..++....+ +.+....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 345678888888888776532 1112111 1246666677788888888888888888776 6677777
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcC-CChhhHHHHHHHHHH
Q 012126 134 TYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHR-NYLRPAFDLFKSAHK 194 (470)
Q Consensus 134 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~~a~~~~~~~~~ 194 (470)
-.-..+|...|+++.|+..|+++.+ +.|+....+.-|..|.... ...+...++|..|..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777888888888888888888887 5677666665555554322 223344556666653
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.60 E-value=1.5 Score=33.32 Aligned_cols=90 Identities=18% Similarity=0.068 Sum_probs=59.3
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCCHhh---HHHHHHHHHhcC
Q 012126 210 AFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNK-GFVPDTLS---YTTLLNSLCRKK 285 (470)
Q Consensus 210 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~---~~~ll~~~~~~~ 285 (470)
+++..|+++.|++.|.+.+..-++ ....||.-..++.-.|+.++|++=+++.++. |.+ .... |..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 456778888888888777665333 6677777778888888888888777777653 222 2222 222233456677
Q ss_pred CHHHHHHHHHHHHHcC
Q 012126 286 KLREAYKLLCRMKVKG 301 (470)
Q Consensus 286 ~~~~a~~~~~~m~~~~ 301 (470)
+.+.|..-|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7788877777776665
No 252
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=2.6 Score=35.95 Aligned_cols=207 Identities=15% Similarity=0.078 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012126 130 PSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMR 209 (470)
Q Consensus 130 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 209 (470)
...|..-..+|-...++++|...+.+..+. ..-+...|+. ...++.|.-+.+++.+.. --+..|+....
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA--------AKayEqaamLake~~kls--Evvdl~eKAs~ 99 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA--------AKAYEQAAMLAKELSKLS--EVVDLYEKASE 99 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH--------HHHHHHHHHHHHHHHHhH--HHHHHHHHHHH
Confidence 455666666777778888888877766531 1111111221 112566666666666541 12345667777
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC---CC--CCCHhhHHHHHHHHHhc
Q 012126 210 AFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNK---GF--VPDTLSYTTLLNSLCRK 284 (470)
Q Consensus 210 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~ll~~~~~~ 284 (470)
+|...|..+.|-..+++.-+. ..+-++++|+++|.+.... +- ..-...+..+-+.+.+.
T Consensus 100 lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 888888888877777664332 1233455555555543321 10 01112233333445555
Q ss_pred CCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHhchhCC---CCCCHHHHHHHHHHHHhcCC
Q 012126 285 KKLREAYKLLCRMKVK----GCNPDI-VHYNTVVLGFCREGRAIDACKVLEDMPSNG---CLPNLVSYRTLVGGLCDQGM 356 (470)
Q Consensus 285 ~~~~~a~~~~~~m~~~----~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~ 356 (470)
..+++|-..+.+-... .-.++. ..|-..|-.+.-..++..|...++.-.+.+ -.-+..+...|+.+|- .|+
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD 242 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGD 242 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCC
Confidence 5555555444332111 011121 234445555666677888888877743321 1234566667776664 466
Q ss_pred hHHHHHHH
Q 012126 357 FDVAKKYM 364 (470)
Q Consensus 357 ~~~a~~~~ 364 (470)
.+++.+++
T Consensus 243 ~E~~~kvl 250 (308)
T KOG1585|consen 243 IEEIKKVL 250 (308)
T ss_pred HHHHHHHH
Confidence 66665554
No 253
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=3.2 Score=38.20 Aligned_cols=97 Identities=13% Similarity=0.045 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 012126 201 TKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNS 280 (470)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 280 (470)
..+++.+.-+|.+.+++..|++..+..++.+.. |+-..--=..++...|+++.|+..|+++++..+. |-.+-+-++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 345666777778888888888888887776533 6666666677778888888888888888776433 33344444444
Q ss_pred HHhcCCH-HHHHHHHHHHHH
Q 012126 281 LCRKKKL-REAYKLLCRMKV 299 (470)
Q Consensus 281 ~~~~~~~-~~a~~~~~~m~~ 299 (470)
--+.... +...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 3333333 333556666644
No 254
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.47 E-value=4.6 Score=38.40 Aligned_cols=58 Identities=12% Similarity=0.105 Sum_probs=33.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 012126 346 TLVGGLCDQGMFDVAKKYMQLMISKG-FSPHFSVSHALIKGFCNVGKVDEACGVLEELL 403 (470)
Q Consensus 346 ~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 403 (470)
.+..++-+.|+.++|.+.+.+|.+.. ..-+..+...|+.++...+.+.++..++.+..
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34445556666677777666666532 11123355566666666666766666666653
No 255
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.41 E-value=2.5 Score=42.57 Aligned_cols=178 Identities=15% Similarity=0.168 Sum_probs=101.8
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHH---HHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012126 133 FTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILEL---LVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMR 209 (470)
Q Consensus 133 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 209 (470)
...-++...+...++-|+.+-+.-. .+......+... +...+|++++|...|-+-+.. ++| ..+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 4445555566666666665544321 122233333222 233566677777777665532 112 23455
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 012126 210 AFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLRE 289 (470)
Q Consensus 210 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 289 (470)
-|....++..-..+++.+.+.|+. +...-..|+.+|.+.++.++..++.+... .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 556666666777777777777766 55666678888888888887776665543 2211 1124455666666677777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhch
Q 012126 290 AYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMP 333 (470)
Q Consensus 290 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 333 (470)
|..+-..... .......+ +-..+++++|++.+..+.
T Consensus 482 a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 7665554432 23333333 335677888888877764
No 256
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.36 E-value=1.8 Score=33.72 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=24.9
Q ss_pred HhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 012126 352 CDQGMFDVAKKYMQLMISKGF--SPHFSVSHALIKGFCNVGKVDEACGVLEELLKA 405 (470)
Q Consensus 352 ~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (470)
.+.|++++|.+.|+.+..+-. +-....--.++.+|.+.|++++|...++++++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344555555555555544310 111223334445555555555555555555544
No 257
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.23 E-value=6.5 Score=39.72 Aligned_cols=223 Identities=12% Similarity=0.130 Sum_probs=94.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHh---c
Q 012126 209 RAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGF-VPDTLSYTTLLNSLCR---K 284 (470)
Q Consensus 209 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~---~ 284 (470)
..+.-.|+++.|.+.+-+ ..+...+.+.+.+.+.-|.-.+-.+... ..+..... .|...-+..||..|++ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 444556777777777665 2223335555555544433322222211 22221111 1122567888888886 4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCCHhHHHHHHHhchhCC---------------CCC-CHHH---H
Q 012126 285 KKLREAYKLLCRMKVKGCNPDIVHYNTVV-LGFCREGRAIDACKVLEDMPSNG---------------CLP-NLVS---Y 344 (470)
Q Consensus 285 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~---------------~~p-~~~~---~ 344 (470)
.+..+|.+.+--+....-+.....+...+ ......++++. ++-.+...| ... +... .
T Consensus 341 td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~---LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~ 417 (613)
T PF04097_consen 341 TDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDL---LLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREII 417 (613)
T ss_dssp T-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHH---HHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHH---HCCCCCCCCccccceeeccccccCCCCcHHHHHHHH
Confidence 67888888888776653211222222222 22233332222 222211111 111 2222 2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCC-----------HHHHHHHHHHHHHCC-----C
Q 012126 345 RTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIK-GFCNVGK-----------VDEACGVLEELLKAG-----E 407 (470)
Q Consensus 345 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~-----------~~~a~~~~~~~~~~~-----~ 407 (470)
.....-+...|++++|..+|....+.+ .-..+.|..+. +...... ...|..+.+.....+ +
T Consensus 418 ~~~A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~ 495 (613)
T PF04097_consen 418 EQAAREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKV 495 (613)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhc
Confidence 223344667888888888887664321 11223333332 2222222 344555554443321 1
Q ss_pred -CCCHHHHHHHHHH-----HHcCCcHHHHHHHHHHHHHccccC
Q 012126 408 -APHEDTWVMIVPQ-----ICAGEEMEKLGEVLNEIVKVEIKG 444 (470)
Q Consensus 408 -~p~~~~~~~l~~~-----~~~~g~~~~a~~~~~~m~~~~~~p 444 (470)
..+..|+..|+.. +...|++++|++.++++ ++-|
T Consensus 496 ~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L---~liP 535 (613)
T PF04097_consen 496 SRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL---DLIP 535 (613)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT---T-S-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCC
Confidence 1123455555543 46789999998887776 4555
No 258
>PRK11906 transcriptional regulator; Provisional
Probab=94.23 E-value=4.1 Score=38.48 Aligned_cols=80 Identities=11% Similarity=-0.029 Sum_probs=40.6
Q ss_pred hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHH
Q 012126 112 SLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKS 191 (470)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 191 (470)
.+|.++-+...+.+ +.|+.+...+..+....++++.|...|++... ..|+..........+....|+.++|.+.+++
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555554 44555555555555555666666666666555 2344443333333333344445555555555
Q ss_pred HHH
Q 012126 192 AHK 194 (470)
Q Consensus 192 ~~~ 194 (470)
..+
T Consensus 398 alr 400 (458)
T PRK11906 398 SLQ 400 (458)
T ss_pred Hhc
Confidence 443
No 259
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.22 E-value=2.4 Score=34.19 Aligned_cols=133 Identities=14% Similarity=0.225 Sum_probs=68.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHH
Q 012126 221 YTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKK--KLREAYKLLCRMK 298 (470)
Q Consensus 221 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~ 298 (470)
.++++.+.+.++.|+...+..++..+.+.|.+.... .++..++-+|.......+-.+.... -.+-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 344555556667777777777777777777654443 3334455555544443332222211 1233444444433
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012126 299 VKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMIS 369 (470)
Q Consensus 299 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 369 (470)
. .+..++..+...|++-+|+++.+..... +......++++-.+.++...-..+++-..+
T Consensus 90 ~--------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 T--------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h--------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 2445666677777777777777664332 111223355555555555544444444433
No 260
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.06 E-value=4.2 Score=36.38 Aligned_cols=63 Identities=16% Similarity=0.088 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012126 237 ESYRILMQGLCRKSQVN---RAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 237 ~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 300 (470)
.++..++.+|...+..+ +|..+++.+...... ....+-.-++.+.+.++.+.+.+++.+|...
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 34455666666655533 445555555443222 2334444555666667777777777777665
No 261
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.97 E-value=1.5 Score=33.39 Aligned_cols=91 Identities=13% Similarity=0.010 Sum_probs=55.8
Q ss_pred HHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCC
Q 012126 315 GFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFS---VSHALIKGFCNVGK 391 (470)
Q Consensus 315 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~ 391 (470)
+....|+.+.|++.|.+.... .+-....||.-.+++.-.|+.++|+.=+++..+..-..... .|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 456677777777777776654 23356667777777777777777777777776632111211 22222234566677
Q ss_pred HHHHHHHHHHHHHCC
Q 012126 392 VDEACGVLEELLKAG 406 (470)
Q Consensus 392 ~~~a~~~~~~~~~~~ 406 (470)
-+.|..=|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777776665
No 262
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.93 E-value=0.08 Score=30.18 Aligned_cols=25 Identities=12% Similarity=-0.045 Sum_probs=15.7
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH
Q 012126 414 WVMIVPQICAGEEMEKLGEVLNEIV 438 (470)
Q Consensus 414 ~~~l~~~~~~~g~~~~a~~~~~~m~ 438 (470)
|..|...|.+.|++++|++++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666666666666666666654
No 263
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.85 E-value=0.8 Score=40.34 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=59.2
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHh-----CCCccCHHHHHHH
Q 012126 97 TYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLE-----FNCKPLPKQLNRI 171 (470)
Q Consensus 97 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l 171 (470)
++..+++.+...++++.+...++.+.... |-+...|..++.+|.+.|+...|+..|+++.. .|+.|........
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45566777788888899999888888886 77888899999999999999999998887764 4666655555444
Q ss_pred HHH
Q 012126 172 LEL 174 (470)
Q Consensus 172 l~~ 174 (470)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
No 264
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.82 E-value=4.8 Score=36.23 Aligned_cols=129 Identities=13% Similarity=0.129 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh--cC----CHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCC--
Q 012126 253 NRAVDLLEDMLNKGFVPDTLSYTTLLNSLCR--KK----KLREAYKLLCRMKVKGC---NPDIVHYNTVVLGFCREGR-- 321 (470)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~~~-- 321 (470)
++.+.+++.|.+.|+.-+..+|-+....... .. ....+..+|+.|.+... .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4455566666666666555555443322222 11 24456666666665421 1233444444332 2222
Q ss_pred --HhHHHHHHHhchhCCCCCCH--HHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012126 322 --AIDACKVLEDMPSNGCLPNL--VSYRTLVGGLCDQGM--FDVAKKYMQLMISKGFSPHFSVSHALI 383 (470)
Q Consensus 322 --~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li 383 (470)
.+.+..+|+.+.+.|+..+. .....++..+..... ...+..+++.+.+.|+++....|..+.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 23445555555555544322 222222222211111 335555666666666665555444433
No 265
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.82 E-value=0.24 Score=29.70 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=13.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHC
Q 012126 379 SHALIKGFCNVGKVDEACGVLEELLKA 405 (470)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (470)
+..+...|...|++++|.++|++.++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344445555555555555555555543
No 266
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.79 E-value=2.4 Score=37.94 Aligned_cols=156 Identities=12% Similarity=-0.005 Sum_probs=107.6
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCCHhhH--HHHHHHHHhcCCHH
Q 012126 212 CFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNK-GFVPDTLSY--TTLLNSLCRKKKLR 288 (470)
Q Consensus 212 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~--~~ll~~~~~~~~~~ 288 (470)
--.|++.+|-..++++.+.- +.|...+.-.=.+|.-.|+.+.-...++++... +....-.+| ....-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 35688888888888888763 448888888888999999999888888887754 222122223 33334455789999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 012126 289 EAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSN---GCLPNLVSYRTLVGGLCDQGMFDVAKKYMQ 365 (470)
Q Consensus 289 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 365 (470)
+|++.-++..+.+ +.|...-.+....+-..|++.++.+++.+-... +-..-...|-...-.+...+.++.|+.+|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998887764 346777778888888899999999888765432 111112223333334556688999999997
Q ss_pred HHHH
Q 012126 366 LMIS 369 (470)
Q Consensus 366 ~~~~ 369 (470)
.-+-
T Consensus 272 ~ei~ 275 (491)
T KOG2610|consen 272 REIW 275 (491)
T ss_pred HHHH
Confidence 5443
No 267
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.72 E-value=3.9 Score=34.75 Aligned_cols=83 Identities=18% Similarity=0.129 Sum_probs=36.2
Q ss_pred CChhhHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCChHHHHH
Q 012126 180 NYLRPAFDLFKSAHKH-GVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQ-GLCRKSQVNRAVD 257 (470)
Q Consensus 180 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~ 257 (470)
+.+..+...+...... ........+......+...+++..+.+.+.........+ ......... .+...|+++.+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~ 151 (291)
T COG0457 73 GRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALE 151 (291)
T ss_pred ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHH
Confidence 3344455444444431 111233444444445555555555555555554433222 111111222 4555555555555
Q ss_pred HHHHHH
Q 012126 258 LLEDML 263 (470)
Q Consensus 258 ~~~~~~ 263 (470)
.+.+..
T Consensus 152 ~~~~~~ 157 (291)
T COG0457 152 LYEKAL 157 (291)
T ss_pred HHHHHH
Confidence 555553
No 268
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.57 E-value=1.1 Score=39.43 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----CCCCCCHhhHH
Q 012126 201 TKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLN-----KGFVPDTLSYT 275 (470)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 275 (470)
..++..++..+...|+++.+.+.++++....+. +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 345666777777777777777777777776543 777777778888888887777777777654 46666666555
Q ss_pred HHHHH
Q 012126 276 TLLNS 280 (470)
Q Consensus 276 ~ll~~ 280 (470)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 54444
No 269
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.55 E-value=5.4 Score=35.93 Aligned_cols=131 Identities=15% Similarity=0.180 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cC----ChHHHHHHHHHHHhCCC---CCCHhhHHHHHHHHHhcCC-
Q 012126 217 ISIAYTLFNKMFERGVMPDVESYRILMQGLCR--KS----QVNRAVDLLEDMLNKGF---VPDTLSYTTLLNSLCRKKK- 286 (470)
Q Consensus 217 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~- 286 (470)
+++...+++.|.+.|+.-+..+|-+....... .. ...++..+|+.|++..+ .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556778888888887777666553333332 12 25678888888887643 2344555555443 3333
Q ss_pred ---HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCC--HhHHHHHHHhchhCCCCCCHHHHHHHHH
Q 012126 287 ---LREAYKLLCRMKVKGCNPDI--VHYNTVVLGFCREGR--AIDACKVLEDMPSNGCLPNLVSYRTLVG 349 (470)
Q Consensus 287 ---~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~li~ 349 (470)
.+.++.+|+.+.+.|+..+. .....++........ ...+.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 35666777777776665443 233333332222211 4578888889999998888777775543
No 270
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.50 E-value=0.28 Score=29.46 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=9.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHh
Q 012126 242 LMQGLCRKSQVNRAVDLLEDMLN 264 (470)
Q Consensus 242 ll~~~~~~~~~~~a~~~~~~~~~ 264 (470)
+...|...|++++|+++|+++++
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 271
>PRK11906 transcriptional regulator; Provisional
Probab=93.46 E-value=7 Score=37.03 Aligned_cols=116 Identities=14% Similarity=0.104 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHh-CCCccCHHHHHHHHHHHHh---------cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 012126 147 DRALKTFRSMLE-FNCKPLPKQLNRILELLVT---------HRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGD 216 (470)
Q Consensus 147 ~~A~~~~~~~~~-~~~~p~~~~~~~ll~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 216 (470)
+.|+.+|.+... ....|+-......+..+.. ......+|.++-++..+.+.. |......+..+....++
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcc
Confidence 556777777661 2244554433333332221 011223344444444444322 44444444444444455
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012126 217 ISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLN 264 (470)
Q Consensus 217 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 264 (470)
++.|..+|++....++. ...+|....-...-.|+.++|.+.+++..+
T Consensus 354 ~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 354 AKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred hhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 55555555555444322 233333333333444555555555555433
No 272
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=5.1 Score=35.34 Aligned_cols=142 Identities=13% Similarity=0.157 Sum_probs=83.6
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHh
Q 012126 244 QGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAI 323 (470)
Q Consensus 244 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 323 (470)
......|++.+|..+|......... +...--.+.++|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4456778888888888888776544 445566678888888888888888888755421111222222334444444444
Q ss_pred HHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccC
Q 012126 324 DACKVLEDMPSNGCLP-NLVSYRTLVGGLCDQGMFDVAKKYMQLMISK--GFSPHFSVSHALIKGFCNVG 390 (470)
Q Consensus 324 ~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g 390 (470)
+...+-...-. .| |...-..+...+...|+.+.|...+-.++++ |.. |...-..++..+.-.|
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 44444444333 23 4555555666777777777777766666553 322 3344455555555555
No 273
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.18 E-value=4.6 Score=40.80 Aligned_cols=179 Identities=11% Similarity=0.148 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHH----HHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHH
Q 012126 95 NSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTY----LIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNR 170 (470)
Q Consensus 95 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 170 (470)
.-....-+..+.+..-++.|..+-+.- + .++..... -.+.+-+.|++++|...|-+-+.. +.|. ..
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-~V--- 403 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-EV--- 403 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-HH---
Confidence 345666777888888888888776542 2 23333333 444455689999999988776542 2232 22
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 012126 171 ILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKS 250 (470)
Q Consensus 171 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 250 (470)
+..+. .......-..+++.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+
T Consensus 404 -i~kfL-daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 404 -IKKFL-DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSN 477 (933)
T ss_pred -HHHhc-CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhC
Confidence 22222 222356667778888888875 77788899999999999998877766544 3321 112344566666777
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 012126 251 QVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRM 297 (470)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 297 (470)
-.++|..+-..... +......++ -..+++++|.+.+..+
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 77777665544332 333333333 3456777777776654
No 274
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.04 E-value=5.6 Score=36.11 Aligned_cols=227 Identities=11% Similarity=0.015 Sum_probs=135.4
Q ss_pred cCCChhhHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHH----HHHCC-CCCCHHHHHHHHHHHHHcC
Q 012126 178 HRNYLRPAFDLFKSAHKHG--VLPNTKSYNIMMRAFCFNGDISIAYTLFNK----MFERG-VMPDVESYRILMQGLCRKS 250 (470)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~-~~p~~~~~~~ll~~~~~~~ 250 (470)
+..+.++++..+.+....- ..-...++..+..+.++.|.+++++..--. ..+.. -..-.+.|..+.+++.+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445788888777766431 111345677777888888888877654322 22211 0011234555556666666
Q ss_pred ChHHHHHHHHHHHhC-CCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHhcCC
Q 012126 251 QVNRAVDLLEDMLNK-GFVP---DTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCN-----PDIVHYNTVVLGFCREGR 321 (470)
Q Consensus 251 ~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~~~li~~~~~~~~ 321 (470)
++.+++.+-..-... |..| .-....++-.++...+.++++++.|+...+.... ....++-.|-..|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 666666655444332 2222 1123345666777788889999988877543111 123567788888889999
Q ss_pred HhHHHHHHHhchh----CCCCCCHH-----HHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHH
Q 012126 322 AIDACKVLEDMPS----NGCLPNLV-----SYRTLVGGLCDQGMFDVAKKYMQLMIS----KGFSP-HFSVSHALIKGFC 387 (470)
Q Consensus 322 ~~~a~~~~~~m~~----~~~~p~~~-----~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~ 387 (470)
+++|.-+..+..+ .++.--.. ....|.-++...|++..|.+.-++..+ .|-.+ .......+.+.|-
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 9998877766543 22221122 223344567778888888888877655 33221 1234456678888
Q ss_pred ccCCHHHHHHHHHHHHH
Q 012126 388 NVGKVDEACGVLEELLK 404 (470)
Q Consensus 388 ~~g~~~~a~~~~~~~~~ 404 (470)
..|+.+.|+.-|+....
T Consensus 258 ~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQAMG 274 (518)
T ss_pred hcccHhHHHHHHHHHHH
Confidence 88898888887777654
No 275
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.81 E-value=7 Score=35.13 Aligned_cols=161 Identities=12% Similarity=0.031 Sum_probs=112.2
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHH--HHHHHHHHHcCChH
Q 012126 178 HRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDV--ESY--RILMQGLCRKSQVN 253 (470)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~--~~ll~~~~~~~~~~ 253 (470)
.+|.+.+|-..++++++.- +.|...++..=.+|...|+.+.-...++++... ..+|. .+| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4566778888888888754 348888888889999999999999999988765 12232 233 33444566789999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 012126 254 RAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVK---GCNPDIVHYNTVVLGFCREGRAIDACKVLE 330 (470)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 330 (470)
+|++.-++..+.+.. |...-.++...+--.|+..++.+.+.+-... +.-.-..-|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 999999888876543 6666777777788889999999888775432 100111223344445677799999999998
Q ss_pred h-chhCCCCCCH
Q 012126 331 D-MPSNGCLPNL 341 (470)
Q Consensus 331 ~-m~~~~~~p~~ 341 (470)
. |...--+.|.
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 6 4443334444
No 276
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.42 E-value=6.4 Score=33.73 Aligned_cols=90 Identities=18% Similarity=0.086 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC---CCCHhhHH
Q 012126 204 YNIMMRAFCFNGDISIAYTLFNKMFER----GVMPD-VESYRILMQGLCRKSQVNRAVDLLEDMLNKGF---VPDTLSYT 275 (470)
Q Consensus 204 ~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~ 275 (470)
+..+-+.+.+...+++|-..|.+-... .--++ ...|...|-.+.-..|+..|...++..-+.+- .-+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 344445555666666655444332111 00111 11233334444455566666666666433221 12344555
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 012126 276 TLLNSLCRKKKLREAYKLL 294 (470)
Q Consensus 276 ~ll~~~~~~~~~~~a~~~~ 294 (470)
.|+.+|- .||.+++.++.
T Consensus 233 nLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHhc-cCCHHHHHHHH
Confidence 5665553 35555554443
No 277
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.08 E-value=1.3 Score=39.12 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=73.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCC---CccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCH
Q 012126 125 HYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFN---CKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNT 201 (470)
Q Consensus 125 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 201 (470)
|.+.+..+...++..-....+++++...+-++.... ..|+ .+-...++.+.+. +.++++.++..-++.|+.||.
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irlllky--~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLLLKY--DPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHHHcc--ChHHHHHHHhCcchhccccch
Confidence 445555556666666666778888888887776421 1121 1223334444322 367889999888999999999
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 012126 202 KSYNIMMRAFCFNGDISIAYTLFNKMFERG 231 (470)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 231 (470)
.+++.+|+.+.+.+++.+|.++.-.|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999888776653
No 278
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.92 E-value=3.3 Score=34.10 Aligned_cols=63 Identities=10% Similarity=0.145 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012126 202 KSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPD--VESYRILMQGLCRKSQVNRAVDLLEDMLN 264 (470)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 264 (470)
..+..+...|++.|+.+.|.+.|.++.+....+. ...+-.++......+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566777888888888888888888777644332 33455666777777787777777666543
No 279
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.90 E-value=9 Score=34.29 Aligned_cols=223 Identities=12% Similarity=0.113 Sum_probs=120.1
Q ss_pred HhcCChhHHHHHHHHHHHCC--CCCCH------HHHHHHHHHHHHcC-ChHHHHHHHHHHHhC--------CCCCC----
Q 012126 212 CFNGDISIAYTLFNKMFERG--VMPDV------ESYRILMQGLCRKS-QVNRAVDLLEDMLNK--------GFVPD---- 270 (470)
Q Consensus 212 ~~~g~~~~a~~~~~~m~~~~--~~p~~------~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~---- 270 (470)
.+.|+++.|..++.+..... ..|+. ..|+.-.. ....+ +++.|..++++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35677777777776665432 12211 12222222 23344 777776666654432 11222
Q ss_pred -HhhHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHH
Q 012126 271 -TLSYTTLLNSLCRKKKLR---EAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRT 346 (470)
Q Consensus 271 -~~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 346 (470)
..+...++.+|...+..+ +|..+++.+.... .-.+..+-.-+..+.+.++.+++.+.+..|... +.-....+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHH
Confidence 245667788888777654 5666666775442 112445555567777789999999999999886 2223445555
Q ss_pred HHHHH---HhcCChHHHHHHHHHHHHCCCCCCHH-HHH-HHHHH---HHccCC------HHHHHHHHHHHHH-CCCCCCH
Q 012126 347 LVGGL---CDQGMFDVAKKYMQLMISKGFSPHFS-VSH-ALIKG---FCNVGK------VDEACGVLEELLK-AGEAPHE 411 (470)
Q Consensus 347 li~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~-~li~~---~~~~g~------~~~a~~~~~~~~~-~~~~p~~ 411 (470)
++..+ ... ....+...+..++...+.|... ... .++.. ....++ ++...++++...+ .+.+.+.
T Consensus 161 ~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 161 ILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 55544 333 3456666666666554555543 111 11111 122211 4455555553322 2233333
Q ss_pred HH---HHHHH----HHHHcCCcHHHHHHHHHHHH
Q 012126 412 DT---WVMIV----PQICAGEEMEKLGEVLNEIV 438 (470)
Q Consensus 412 ~~---~~~l~----~~~~~~g~~~~a~~~~~~m~ 438 (470)
.+ ..+++ ..+.+.+++++|.+.++-.+
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 33 22333 23567899999999988655
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.55 E-value=5.3 Score=32.85 Aligned_cols=97 Identities=7% Similarity=-0.039 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012126 237 ESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPD--TLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVL 314 (470)
Q Consensus 237 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 314 (470)
..+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|+...-.+++..+...+.+....-..........=+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4566777888888888888888888877644433 23455667777778888888777766644311111111111111
Q ss_pred -----HHHhcCCHhHHHHHHHhch
Q 012126 315 -----GFCREGRAIDACKVLEDMP 333 (470)
Q Consensus 315 -----~~~~~~~~~~a~~~~~~m~ 333 (470)
.+...+++.+|-+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 1234667777777766654
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.25 E-value=0.54 Score=26.69 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=19.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 012126 378 VSHALIKGFCNVGKVDEACGVLEELL 403 (470)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~ 403 (470)
+|+.|...|.+.|++++|.++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677788888888888888888754
No 282
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.06 E-value=16 Score=35.64 Aligned_cols=124 Identities=10% Similarity=-0.000 Sum_probs=84.6
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHH
Q 012126 304 PDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGF--SPHFSVSHA 381 (470)
Q Consensus 304 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~ 381 (470)
++..+|..-+.-....|+++.+.-+|+...-. +..-...|-..+.-....|+.+-|..++....+--. .|......+
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 34567888888888999999999999887652 333445566666666667999999888877766432 334444444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcCCcHHHHHH
Q 012126 382 LIKGFCNVGKVDEACGVLEELLKAGEAPHED-TWVMIVPQICAGEEMEKLGE 432 (470)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~ 432 (470)
.+ .-..|+++.|..+++...+.- |+.. .-..-+....+.|+.+.+..
T Consensus 374 ~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 374 RF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhH
Confidence 44 335689999999999997753 5543 22233445677888888873
No 283
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.68 E-value=16 Score=34.99 Aligned_cols=177 Identities=14% Similarity=0.074 Sum_probs=95.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012126 235 DVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVL 314 (470)
Q Consensus 235 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 314 (470)
|.....+++..+..+-...-++.+-.+|...|- +-..|..++.+|... ..+.-..+|+++.+..+. |++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 555556666666666666666666666666542 555666677777666 445566666766665332 3333333333
Q ss_pred HHHhcCCHhHHHHHHHhchhCCCC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHc
Q 012126 315 GFCREGRAIDACKVLEDMPSNGCL-----PNLVSYRTLVGGLCDQGMFDVAKKYMQLMIS-KGFSPHFSVSHALIKGFCN 388 (470)
Q Consensus 315 ~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~ 388 (470)
-| ..++...+..+|.++...-++ .-...|..+...- ..+.+....+..++.. .|...-...+.-+-.-|..
T Consensus 141 ~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 33 336666666666665543211 0112344443311 2455555555555544 2333334455555566667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012126 389 VGKVDEACGVLEELLKAGEAPHEDTWVMIVP 419 (470)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 419 (470)
..++++|.+++...++.+-+ |...-..++.
T Consensus 218 ~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~ 247 (711)
T COG1747 218 NENWTEAIRILKHILEHDEK-DVWARKEIIE 247 (711)
T ss_pred ccCHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence 77777777777776665422 3333344444
No 284
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.63 E-value=0.64 Score=25.66 Aligned_cols=27 Identities=11% Similarity=0.182 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 012126 413 TWVMIVPQICAGEEMEKLGEVLNEIVK 439 (470)
Q Consensus 413 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 439 (470)
.|..+...+...|++++|++.+++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666666666666666666664
No 285
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.60 E-value=8.8 Score=34.93 Aligned_cols=166 Identities=13% Similarity=0.083 Sum_probs=104.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-----CCCCHhhH
Q 012126 204 YNIMMRAFCFNGDISIAYTLFNKMFER-GVMP---DVESYRILMQGLCRKSQVNRAVDLLEDMLNKG-----FVPDTLSY 274 (470)
Q Consensus 204 ~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~ 274 (470)
|-.+.+++-+.-++.+++.+-..-... |..| ......++..++.-.+.++++++.|+...+.. ......++
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 444445554445555555544433322 3322 22344557778888889999999999876532 12245688
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHH-----HHHHHHHhcCCHhHHHHHHHhchh----CCCCC-C
Q 012126 275 TTLLNSLCRKKKLREAYKLLCRMKVK----GCNPDIVHYN-----TVVLGFCREGRAIDACKVLEDMPS----NGCLP-N 340 (470)
Q Consensus 275 ~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~----~~~~p-~ 340 (470)
..|-..|.+..|+++|.-+.....+. ++..=..-|. .|.-++...|...+|.+.-++..+ .|-++ .
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 99999999999999998877665432 2221111222 344467778888888887777543 34222 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012126 341 LVSYRTLVGGLCDQGMFDVAKKYMQLMIS 369 (470)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 369 (470)
......+.+.|...|+.+.|..-|+....
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 33455677788899999998888877654
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.56 E-value=7.6 Score=31.01 Aligned_cols=52 Identities=21% Similarity=0.073 Sum_probs=24.1
Q ss_pred HccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHh
Q 012126 106 GRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLE 158 (470)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 158 (470)
.+.++.+.+..++..+.... |-.+..-..-...+...|++.+|+.+|+++.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 34455555555555554432 22233333333344455555555555555544
No 287
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.39 E-value=9.8 Score=32.01 Aligned_cols=179 Identities=16% Similarity=0.093 Sum_probs=92.0
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 012126 180 NYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLL 259 (470)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 259 (470)
|-+..|.--|.+.....+. -..+||.|.--+...|+++.|.+.|+...+.+..-+-...|--|.. .-.|++.-|.+-+
T Consensus 79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHH
Confidence 3344444445555543322 3567888888888999999999999998887655343333333333 3457888888777
Q ss_pred HHHHhCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCC
Q 012126 260 EDMLNKGFV-PDTLSYTTLLNSLCRKKKLREAYKLL-CRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGC 337 (470)
Q Consensus 260 ~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~-~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 337 (470)
...-+.+.. |-...|--++ -..-++.+|..-+ ++..+. |..-|...|-.|.- |+.. ...+++.+... -
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a 226 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EETLMERLKAD-A 226 (297)
T ss_pred HHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-c
Confidence 666665432 2222232222 2344566665443 333333 43344433332221 1111 11122222221 0
Q ss_pred CC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 012126 338 LP-------NLVSYRTLVGGLCDQGMFDVAKKYMQLMISK 370 (470)
Q Consensus 338 ~p-------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 370 (470)
.- -..||--+..-+...|+.++|..+|+-.+..
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 10 1234555555566666666666666655543
No 288
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.37 E-value=12 Score=33.07 Aligned_cols=135 Identities=7% Similarity=0.133 Sum_probs=80.8
Q ss_pred hhhHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-cC-ChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 012126 182 LRPAFDLFKSAHK-HGVLPNTKSYNIMMRAFCF-NG-DISIAYTLFNKMFE-RGVMPDVESYRILMQGLCRKSQVNRAVD 257 (470)
Q Consensus 182 ~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 257 (470)
..+|+.+|+...- ..+--|..+...+++.... .+ ....-.++.+-+.. .|..++..+...++..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4455555552211 1233466666666665554 22 22222333333332 2456677777788888888888888888
Q ss_pred HHHHHHhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH-----HHHcCCCCCHHHHHHHHHHH
Q 012126 258 LLEDMLNK-GFVPDTLSYTTLLNSLCRKKKLREAYKLLCR-----MKVKGCNPDIVHYNTVVLGF 316 (470)
Q Consensus 258 ~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-----m~~~~~~~~~~~~~~li~~~ 316 (470)
++...... +..-|...|..+|+.....|+..-...+.++ +...|+..+...-..+-..+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 88877655 5566788888888888888887777776654 23445555555444444443
No 289
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.37 E-value=0.86 Score=25.22 Aligned_cols=28 Identities=7% Similarity=0.039 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 012126 412 DTWVMIVPQICAGEEMEKLGEVLNEIVK 439 (470)
Q Consensus 412 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 439 (470)
.+|..+..+|...|++++|+..++++++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3455566666666666666666666664
No 290
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.48 E-value=12 Score=31.57 Aligned_cols=163 Identities=20% Similarity=0.114 Sum_probs=91.1
Q ss_pred CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCC-CCHHHHH
Q 012126 127 PVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVL-PNTKSYN 205 (470)
Q Consensus 127 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 205 (470)
|.-+.+||.|.-.+...|+++.|.+.|+...+.+..-+-...|.-+..+ -.|+++.|.+-|.+.-+.+.. |=...|-
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y--Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWL 173 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY--YGGRYKLAQDDLLAFYQDDPNDPFRSLWL 173 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee--ecCchHhhHHHHHHHHhcCCCChHHHHHH
Confidence 4456788888888888888888888888887754333334444444444 355677777777666654422 2233444
Q ss_pred HHHHHHHhcCChhHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC------CCHhhHHHHH
Q 012126 206 IMMRAFCFNGDISIAYT-LFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFV------PDTLSYTTLL 278 (470)
Q Consensus 206 ~li~~~~~~g~~~~a~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~ll 278 (470)
.+.. ..-++.+|.. +.++.... |..-|...|..|.--.-.+ ..+++.+....-. .-..||--|.
T Consensus 174 Yl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~ 244 (297)
T COG4785 174 YLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLG 244 (297)
T ss_pred HHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence 4333 3345555544 33333333 5455555444433211111 1122222221110 1245677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 012126 279 NSLCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 279 ~~~~~~~~~~~a~~~~~~m~~~ 300 (470)
.-+...|+.++|..+|+-....
T Consensus 245 K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 245 KYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHhccccHHHHHHHHHHHHHH
Confidence 8888888888888888877765
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.23 E-value=9.9 Score=30.37 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=30.9
Q ss_pred HcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHC
Q 012126 142 ESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKH 195 (470)
Q Consensus 142 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 195 (470)
..++.+++..++..+.- ..|.......+-..+.-.+|++.+|..+|+++...
T Consensus 22 ~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 45566666666666655 34555555555555555566667777777666554
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.22 E-value=1.1 Score=24.85 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=15.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 012126 378 VSHALIKGFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (470)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555666666666666666666655
No 293
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.09 E-value=7.6 Score=34.58 Aligned_cols=127 Identities=10% Similarity=0.139 Sum_probs=73.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhC----------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHH
Q 012126 242 LMQGLCRKSQVNRAVDLLEDMLNK----------GFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKG---CNPDIVH 308 (470)
Q Consensus 242 ll~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~ 308 (470)
|.++|.....++.-......+-.. |......+...++..-....+++.++..+-.+.... ..++..
T Consensus 25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~- 103 (418)
T KOG4570|consen 25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT- 103 (418)
T ss_pred hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-
Confidence 455666665665544444333222 233344555556665555667777777776665431 111111
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 012126 309 YNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISK 370 (470)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 370 (470)
-.+.++.+ -.-+.++++.++..=...|+-||..+++.+++.+.+.+++.+|..+...|+..
T Consensus 104 ~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 104 IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHH-HccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 11223322 33456677777777777777778888888888888777777777777666654
No 294
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.99 E-value=0.62 Score=26.07 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHHcCCchhHH
Q 012126 127 PVTPSLFTYLIKIYAESNLPDRAL 150 (470)
Q Consensus 127 ~~~~~~~~~li~~~~~~g~~~~A~ 150 (470)
|-+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 556777777777777777777764
No 295
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.77 E-value=27 Score=34.86 Aligned_cols=275 Identities=13% Similarity=0.055 Sum_probs=142.7
Q ss_pred chhHHHHHHHHHhCCCccCHHHHHHHHHHH----HhcCCChhhHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhc
Q 012126 146 PDRALKTFRSMLEFNCKPLPKQLNRILELL----VTHRNYLRPAFDLFKSAHK-------HGVLPNTKSYNIMMRAFCFN 214 (470)
Q Consensus 146 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~ 214 (470)
...|.++++...+.|.. ..-..+-..+ .....+.+.|+.+|+...+ .| +....+.+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~~---~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS---EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcch---HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 35677777777665522 1111111111 1133457888888888766 44 333455666666654
Q ss_pred C-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH----hc
Q 012126 215 G-----DISIAYTLFNKMFERGVMPDVESYRILMQGLCR-KSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLC----RK 284 (470)
Q Consensus 215 g-----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~ 284 (470)
. +.+.|..++...-+.|.+ +...+...+..... ..+...|.++|....+.|.. . .+-.+..+|. -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~--A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-L--AIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-H--HHHHHHHHHHhCCCcC
Confidence 3 567788888888777643 44333222222222 24577888888888888753 2 2222222222 23
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHH---Hh----cCCh
Q 012126 285 KKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGL---CD----QGMF 357 (470)
Q Consensus 285 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~---~~----~g~~ 357 (470)
.+...|..++.+.-+.| .|...--...+..+.. ++++.+.-.+..+.+.|.+--...-..++... .. ..+.
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccch
Confidence 47888888888888876 2222222222333333 67777776666666655321111111111110 01 1244
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----cCCcHHH
Q 012126 358 DVAKKYMQLMISKGFSPHFSVSHALIKGFCNV----GKVDEACGVLEELLKAGEAPHEDTWVMIVPQIC----AGEEMEK 429 (470)
Q Consensus 358 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~ 429 (470)
+.+...+......| +......+-+.|... .+++.|...+......+ ....| .+...+- -.. +..
T Consensus 456 ~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~-nlg~~~e~g~g~~~-~~~ 527 (552)
T KOG1550|consen 456 ERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALF-NLGYMHEHGEGIKV-LHL 527 (552)
T ss_pred hHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHh-hhhhHHhcCcCcch-hHH
Confidence 55555555555444 444555555555433 24677777777665554 22222 2222222 223 667
Q ss_pred HHHHHHHHHHc
Q 012126 430 LGEVLNEIVKV 440 (470)
Q Consensus 430 a~~~~~~m~~~ 440 (470)
|.++++...+.
T Consensus 528 a~~~~~~~~~~ 538 (552)
T KOG1550|consen 528 AKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHhc
Confidence 77777776654
No 296
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.73 E-value=0.64 Score=26.03 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHH
Q 012126 200 NTKSYNIMMRAFCFNGDISIAY 221 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~ 221 (470)
|...|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 5556666666666666666554
No 297
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.53 E-value=3.8 Score=29.30 Aligned_cols=44 Identities=16% Similarity=0.061 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhc
Q 012126 289 EAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDM 332 (470)
Q Consensus 289 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 332 (470)
++.+-++.+....+.|++....+.+++|.+.+++..|.++|+..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33333334433344444444444444444444444444444433
No 298
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.47 E-value=11 Score=29.73 Aligned_cols=52 Identities=17% Similarity=0.072 Sum_probs=27.3
Q ss_pred ccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhC
Q 012126 107 RAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEF 159 (470)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 159 (470)
...+.+++..+++.+.-.. |..+..-..-...+...|++++|+.+|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3455666666666554442 223333333344455566666666666666553
No 299
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.31 E-value=13 Score=30.69 Aligned_cols=56 Identities=9% Similarity=0.003 Sum_probs=25.4
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcc
Q 012126 384 KGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVE 441 (470)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 441 (470)
+.....|.+|+|+..++...+.+. .......-.+.+...|+-++|..-|++.++.+
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 334445555555555554433221 11122223344555555555555555555443
No 300
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.22 E-value=30 Score=34.61 Aligned_cols=181 Identities=17% Similarity=0.162 Sum_probs=84.4
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHHHHHHHHH---HHccCCchHHHHHHHHHhh-------CCCCCCHHHHHHHHHHHHHcC
Q 012126 75 PLLAKEIFDYASRQPNFRHSNSTYLILILK---LGRAKYFSLIDDILITLKS-------EHYPVTPSLFTYLIKIYAESN 144 (470)
Q Consensus 75 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g 144 (470)
...|.+.++.+...+.. ........+.. .+..++.+.|...+....+ .+ .+.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~--~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS--EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhHHHHHHHHHHhhcch--HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 45677777766554422 22222222222 3456777788877777765 33 2334555666665533
Q ss_pred -----CchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcC---CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hc
Q 012126 145 -----LPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHR---NYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFC--FN 214 (470)
Q Consensus 145 -----~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~ 214 (470)
+.+.|+.++...-+.|. |+.... +..+...+ .+...|.++|...-+.|.. ...-+..++.... ..
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~-~~a~~~---lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGN-PDAQYL---LGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCC-chHHHH---HHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcC
Confidence 34456677666665542 222211 11221111 2355666666666666532 2211111111111 23
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012126 215 GDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGF 267 (470)
Q Consensus 215 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 267 (470)
.+...|..++.+..+.| .|...--...+..+.. +..+.+.-.+..+...|.
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 35566666666666665 2221111122222222 555555555555554443
No 301
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.08 E-value=18 Score=31.98 Aligned_cols=60 Identities=17% Similarity=0.072 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012126 238 SYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMK 298 (470)
Q Consensus 238 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 298 (470)
+++.....|..+|.+.+|.++.+.....+. .+...+-.|+..++..||--.+..-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344556677888888888888888777653 377778888888888888777777766664
No 302
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.07 E-value=22 Score=32.93 Aligned_cols=64 Identities=22% Similarity=0.153 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 012126 341 LVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSP---HFSVSHALIKGFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (470)
..+|..++..+.+.|.++.|...+..+.+.+... ...+...........|+.++|...+++.++
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555666666655555555432110 222333334444555555555555555444
No 303
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.95 E-value=36 Score=35.20 Aligned_cols=231 Identities=14% Similarity=0.032 Sum_probs=126.7
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHhCCCccC-------HHHHHHHHHHHHhcCCChhhHHHHHHHHHHC----CCCCCH
Q 012126 133 FTYLIKIYAESNLPDRALKTFRSMLEFNCKPL-------PKQLNRILELLVTHRNYLRPAFDLFKSAHKH----GVLPNT 201 (470)
Q Consensus 133 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~ 201 (470)
.-.-+......+++++|..+..++...-..|+ ...++.+-.......|+.+++.++-+..... -..+..
T Consensus 418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~ 497 (894)
T COG2909 418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRI 497 (894)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhh
Confidence 33344455668899999999988765322221 2345666666666788889999988877653 123456
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHHHcCCh--HHHHHHHHHHHhCC---C---C
Q 012126 202 KSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILM-----QGLCRKSQV--NRAVDLLEDMLNKG---F---V 268 (470)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll-----~~~~~~~~~--~~a~~~~~~~~~~~---~---~ 268 (470)
..+..+..+..-.|++++|..+..+..+..-.-+...+..+. ..+...|+. .+.+..|....... . .
T Consensus 498 ~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~ 577 (894)
T COG2909 498 VALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHE 577 (894)
T ss_pred hhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccch
Confidence 677788888889999999998887765542222333333222 234455632 22233333322210 0 1
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCCHHH--HHHHHHHHHhcCCHhHHHHHHHhchhCCCCC---
Q 012126 269 PDTLSYTTLLNSLCRKKKLREAYKL----LCRMKVKGCNPDIVH--YNTVVLGFCREGRAIDACKVLEDMPSNGCLP--- 339 (470)
Q Consensus 269 ~~~~~~~~ll~~~~~~~~~~~a~~~----~~~m~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--- 339 (470)
+-..++..++.++.+ .+.+..- ++-.......|-..- +..|+......|+.++|...++++......+
T Consensus 578 f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~ 654 (894)
T COG2909 578 FLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYH 654 (894)
T ss_pred hHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC
Confidence 122344455555554 3333322 222222211111121 2256677888999999999888876543322
Q ss_pred -CHHHHHHHHHH--HHhcCChHHHHHHHHH
Q 012126 340 -NLVSYRTLVGG--LCDQGMFDVAKKYMQL 366 (470)
Q Consensus 340 -~~~~~~~li~~--~~~~g~~~~a~~~~~~ 366 (470)
+...-...+.. -...|+.+.+.....+
T Consensus 655 ~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 655 VDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred chHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 22222222222 2356777777666554
No 304
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.61 E-value=35 Score=34.68 Aligned_cols=104 Identities=7% Similarity=-0.090 Sum_probs=63.1
Q ss_pred HHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 012126 66 QKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNL 145 (470)
Q Consensus 66 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 145 (470)
.+.+.+.+.+++|+.+-+.......-..........|..+.-.|++++|-...-.|... +...|..-+..++..++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 35567778888888887765433211113456777788888889999988888777543 45566666666666665
Q ss_pred chhHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 012126 146 PDRALKTFRSMLEFNCKPLPKQLNRILELLV 176 (470)
Q Consensus 146 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 176 (470)
.... +.-+....-..+...|..+|..+.
T Consensus 439 l~~I---a~~lPt~~~rL~p~vYemvLve~L 466 (846)
T KOG2066|consen 439 LTDI---APYLPTGPPRLKPLVYEMVLVEFL 466 (846)
T ss_pred cchh---hccCCCCCcccCchHHHHHHHHHH
Confidence 4432 222332222234455666555554
No 305
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.53 E-value=44 Score=35.79 Aligned_cols=79 Identities=19% Similarity=0.213 Sum_probs=40.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC
Q 012126 278 LNSLCRKKKLREAYKLLCRMKVKGCNPDIV--HYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQG 355 (470)
Q Consensus 278 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 355 (470)
+.+|-.+|++.+|..+..++... .+.. +-..|+.-+...++.-+|-++..+.... ....+..+++..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAK 1040 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHh
Confidence 44555556666665555555322 1111 1134555566666666666666665442 122334455555
Q ss_pred ChHHHHHHHHHH
Q 012126 356 MFDVAKKYMQLM 367 (470)
Q Consensus 356 ~~~~a~~~~~~~ 367 (470)
.+++|..+....
T Consensus 1041 ~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1041 EWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHhc
Confidence 666666655443
No 306
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.53 E-value=1.6 Score=24.01 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=16.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 012126 378 VSHALIKGFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (470)
.+..+...+...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445555666666666666666666655
No 307
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.51 E-value=6.7 Score=32.62 Aligned_cols=71 Identities=7% Similarity=-0.027 Sum_probs=32.5
Q ss_pred HHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccCCHHHH
Q 012126 324 DACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISK---GFSPHFSVSHALIKGFCNVGKVDEA 395 (470)
Q Consensus 324 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a 395 (470)
+|.+.|-.+...+.--+......|..-|. ..+.+++..++....+. +-.+|+.++.+|+..|.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444443333333333333232 34555555555554442 1234455555555555555555544
No 308
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.19 E-value=1.6 Score=25.34 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 012126 412 DTWVMIVPQICAGEEMEKLGEVLNEIVK 439 (470)
Q Consensus 412 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 439 (470)
.+++.|...|...|++++|.+++++.++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777778888888888888877754
No 309
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.13 E-value=9.5 Score=27.69 Aligned_cols=60 Identities=12% Similarity=0.191 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012126 359 VAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVP 419 (470)
Q Consensus 359 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 419 (470)
+..+-++.+....+.|++.+..+.+.+|.+.+++.-|.++|+....+ +.+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 55555666666667777777777777777777777777777766543 2222225555553
No 310
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.96 E-value=13 Score=29.20 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=36.9
Q ss_pred HcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCC
Q 012126 142 ESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHG 196 (470)
Q Consensus 142 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 196 (470)
..++++++..+++.|.- ..|.......+-..+.-.+|++.+|..+|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 46777888888877765 456655555555555556777888888888887654
No 311
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.61 E-value=7 Score=28.03 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012126 357 FDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVP 419 (470)
Q Consensus 357 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 419 (470)
.-++.+-++.+....+.|++.+..+-+++|-+.+++.-|.++|+....+ +..+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 3345555566666666677777777777777777777777777665432 1123345554443
No 312
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.43 E-value=9.7 Score=36.02 Aligned_cols=54 Identities=15% Similarity=0.083 Sum_probs=25.1
Q ss_pred HhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 012126 317 CREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKG 371 (470)
Q Consensus 317 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 371 (470)
...|+++.+...+...... +.....+..+++....+.|++++|..+-..|....
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~e 387 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNE 387 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccc
Confidence 3445555555544443221 22233444445555555555555555555554443
No 313
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.25 E-value=11 Score=27.43 Aligned_cols=45 Identities=20% Similarity=0.235 Sum_probs=21.6
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012126 256 VDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 300 (470)
.+-+..+....+.|++....+.+.+|.+.+++..|.++|+.+..+
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333444444455555555555555555555555555555555443
No 314
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=86.10 E-value=15 Score=32.27 Aligned_cols=159 Identities=11% Similarity=0.038 Sum_probs=80.1
Q ss_pred HHHccCCchHHHHHHHHHhhCCCCCCHH-------HHHHHHHHHHHcCCchhHHHHHHHH----HhCCCccCHHHHHHHH
Q 012126 104 KLGRAKYFSLIDDILITLKSEHYPVTPS-------LFTYLIKIYAESNLPDRALKTFRSM----LEFNCKPLPKQLNRIL 172 (470)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~p~~~~~~~ll 172 (470)
...+.+++++|+..+.++...|+..+.. +...+...|...|+...--+..... .+..-........+++
T Consensus 12 ~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLi 91 (421)
T COG5159 12 NAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLI 91 (421)
T ss_pred HhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHH
Confidence 3445555666666666665555444432 2333566666666665544443322 1211112233444555
Q ss_pred HHHHhcCCChhhHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHH----HHHCCCCCCHHHHHHHH
Q 012126 173 ELLVTHRNYLRPAFDLFKSAHKHGVLPN-----TKSYNIMMRAFCFNGDISIAYTLFNK----MFERGVMPDVESYRILM 243 (470)
Q Consensus 173 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~~~p~~~~~~~ll 243 (470)
..+-...+.++..+.+.....+....-+ ...=..++..+.+.|.+.+|+.+... +.+.+-+|+..+...+=
T Consensus 92 ekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllE 171 (421)
T COG5159 92 EKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLE 171 (421)
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhh
Confidence 5554455555555555555443321111 11224577888899999998876554 44445555544443332
Q ss_pred -HHHHHcCChHHHHHHHHHH
Q 012126 244 -QGLCRKSQVNRAVDLLEDM 262 (470)
Q Consensus 244 -~~~~~~~~~~~a~~~~~~~ 262 (470)
.+|....+..++..-+...
T Consensus 172 SKvyh~irnv~KskaSLTaA 191 (421)
T COG5159 172 SKVYHEIRNVSKSKASLTAA 191 (421)
T ss_pred HHHHHHHHhhhhhhhHHHHH
Confidence 3455555555554444433
No 315
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.88 E-value=34 Score=32.93 Aligned_cols=78 Identities=15% Similarity=0.168 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012126 182 LRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLED 261 (470)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 261 (470)
++-++.+..+|...| -+...|..++.+|... .-+.-..+++++.+..+. |++.-..|..-|-+ ++.+.+..+|.+
T Consensus 82 ~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk-ik~sk~a~~f~K 156 (711)
T COG1747 82 NQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK-IKKSKAAEFFGK 156 (711)
T ss_pred HHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH-hchhhHHHHHHH
Confidence 444555555555544 2445555555555555 334445555555554432 22222333333333 555555555555
Q ss_pred HHh
Q 012126 262 MLN 264 (470)
Q Consensus 262 ~~~ 264 (470)
+..
T Consensus 157 a~y 159 (711)
T COG1747 157 ALY 159 (711)
T ss_pred HHH
Confidence 443
No 316
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.83 E-value=17 Score=29.43 Aligned_cols=140 Identities=15% Similarity=0.130 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHH-HHHHH
Q 012126 94 SNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSL-FTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPK-QLNRI 171 (470)
Q Consensus 94 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l 171 (470)
+...|..-+. +++.+..++|..-|..+.+.|...-+.. .-......+..|+...|...|+++-.....|-.. ....+
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3445555444 5666777888888888877765433332 2223444566788888888888877654444332 11111
Q ss_pred HH-HHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 012126 172 LE-LLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMP 234 (470)
Q Consensus 172 l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 234 (470)
-. .+....|.++.+....+-+-..+.+.-...-..|.-+-.+.|++..|.++|..+......|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 11 1222455567766666666554443344455667777778899999999998877643333
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.81 E-value=2.2 Score=24.73 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 012126 377 SVSHALIKGFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (470)
.+++.+...|...|++++|..++++.++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888887754
No 318
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.75 E-value=9.7 Score=31.71 Aligned_cols=72 Identities=13% Similarity=0.052 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHH
Q 012126 183 RPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFER---GVMPDVESYRILMQGLCRKSQVNRA 255 (470)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~~~~~a 255 (470)
+.|...|-++...+.--++.....|...|. ..+.+++..++.+..+. +-.+|...+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 444444444444333223333333333222 34444444444443332 1233444444444444444444443
No 319
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=85.68 E-value=25 Score=31.18 Aligned_cols=138 Identities=10% Similarity=0.095 Sum_probs=87.7
Q ss_pred CChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHH-cCC-hHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHhcCCHHHH
Q 012126 215 GDISIAYTLFNKMFE-RGVMPDVESYRILMQGLCR-KSQ-VNRAVDLLEDMLN-KGFVPDTLSYTTLLNSLCRKKKLREA 290 (470)
Q Consensus 215 g~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~-~~~-~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a 290 (470)
..+.+|+++|+.... ..+--|..+...+++.... .+. ...-.++.+.+.. .+-.++..+...+++.+++.+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 445566677663221 2344477777777776655 222 2222233333332 23456777788888888889999988
Q ss_pred HHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHh-----chhCCCCCCHHHHHHHHHHHH
Q 012126 291 YKLLCRMKVK-GCNPDIVHYNTVVLGFCREGRAIDACKVLED-----MPSNGCLPNLVSYRTLVGGLC 352 (470)
Q Consensus 291 ~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-----m~~~~~~p~~~~~~~li~~~~ 352 (470)
.++++..... +..-|...|..+|....+.|+..-...+.++ +.+.|+..+...-..+-..+.
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 8888887655 5556778888899988899988877777765 345566666665555444443
No 320
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.64 E-value=14 Score=36.14 Aligned_cols=131 Identities=14% Similarity=0.095 Sum_probs=86.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 012126 239 YRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCR 318 (470)
Q Consensus 239 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 318 (470)
.+.++..+.+.|-.++|+++- ..||. -| +...+.|+++.|.++..+.. +..-|..|.++...
T Consensus 617 rt~va~Fle~~g~~e~AL~~s-------~D~d~-rF----elal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELS-------TDPDQ-RF----ELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhcC-------CChhh-hh----hhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhh
Confidence 344555566666655555432 22222 22 34456788888887766643 56778899999999
Q ss_pred cCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 012126 319 EGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGV 398 (470)
Q Consensus 319 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 398 (470)
.+++..|.+.|..... |..|+-.+...|+-+....+-....+.|. . |.-..+|...|+++++.++
T Consensus 679 ~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-N-----NLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-c-----chHHHHHHHcCCHHHHHHH
Confidence 9999999988887655 44566667777877766666666666652 2 3334456678999999888
Q ss_pred HHHH
Q 012126 399 LEEL 402 (470)
Q Consensus 399 ~~~~ 402 (470)
+.+-
T Consensus 744 Li~t 747 (794)
T KOG0276|consen 744 LIST 747 (794)
T ss_pred HHhc
Confidence 7654
No 321
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.36 E-value=2.9 Score=22.92 Aligned_cols=29 Identities=7% Similarity=0.052 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 012126 412 DTWVMIVPQICAGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 412 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 440 (470)
.+|..+...|...|++++|.+.|++.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35667777888888888888888888753
No 322
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.06 E-value=0.41 Score=37.82 Aligned_cols=47 Identities=2% Similarity=0.027 Sum_probs=17.4
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 012126 212 CFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDL 258 (470)
Q Consensus 212 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 258 (470)
.+.+.++....+++.+...+...+....+.++..|++.+..++..++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~ 64 (143)
T PF00637_consen 18 EERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEF 64 (143)
T ss_dssp TTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHT
T ss_pred HhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHH
Confidence 33334444444444443333222333334444444444333333333
No 323
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.95 E-value=30 Score=30.67 Aligned_cols=60 Identities=12% Similarity=0.063 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 012126 343 SYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELL 403 (470)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 403 (470)
+++.....|...|.+.+|.++.+.....+ +.+...+-.++..+...|+--.|.+-++.+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34445566777778888887777777653 4566667777777777777666666666553
No 324
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.70 E-value=18 Score=30.05 Aligned_cols=95 Identities=13% Similarity=0.143 Sum_probs=67.2
Q ss_pred HHHHhcCCHhHHHHHHHhchhCCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012126 314 LGFCREGRAIDACKVLEDMPSNGCLPNL-----VSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCN 388 (470)
Q Consensus 314 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 388 (470)
+-+...|++++|..-|...++. +++.. ..|..-..++.+.+.++.|+.-..+.++.+. .......--..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHh
Confidence 4477899999999999998886 33332 3344445677888999999888888877541 122222333457888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH
Q 012126 389 VGKVDEACGVLEELLKAGEAPHED 412 (470)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~p~~~ 412 (470)
...+++|++=|+++++.. |...
T Consensus 181 ~ek~eealeDyKki~E~d--Ps~~ 202 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD--PSRR 202 (271)
T ss_pred hhhHHHHHHHHHHHHHhC--cchH
Confidence 899999999999998854 5544
No 325
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.94 E-value=10 Score=31.90 Aligned_cols=56 Identities=18% Similarity=0.164 Sum_probs=29.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 012126 241 ILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRM 297 (470)
Q Consensus 241 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 297 (470)
.-++.+.+.+.+.+++...++-++..+. |...-..++..+|-.|++++|..-++-.
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 3344455555555666555555554332 4444455555566666666665555444
No 326
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.94 E-value=0.62 Score=36.78 Aligned_cols=86 Identities=10% Similarity=0.120 Sum_probs=54.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 012126 242 LMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGR 321 (470)
Q Consensus 242 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 321 (470)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45556666777777777777776665556777788888888877767777666621 11223445666666666
Q ss_pred HhHHHHHHHhchh
Q 012126 322 AIDACKVLEDMPS 334 (470)
Q Consensus 322 ~~~a~~~~~~m~~ 334 (470)
++++.-++.++..
T Consensus 86 ~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 86 YEEAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHccc
Confidence 6666666666543
No 327
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.57 E-value=4.8 Score=27.58 Aligned_cols=47 Identities=4% Similarity=-0.019 Sum_probs=29.9
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHcCCcHHHHHHHH
Q 012126 388 NVGKVDEACGVLEELLKAGEAPHE--DTWVMIVPQICAGEEMEKLGEVL 434 (470)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~ 434 (470)
..+..++|+..|...++.-..+.. .++..++.+|+..|++++++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777665333221 25566777777777777776653
No 328
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.46 E-value=3.1 Score=24.95 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=16.8
Q ss_pred HHHHHHHcCCchhHHHHHHHHHhCC
Q 012126 136 LIKIYAESNLPDRALKTFRSMLEFN 160 (470)
Q Consensus 136 li~~~~~~g~~~~A~~~~~~~~~~~ 160 (470)
|..+|...|+.+.|.++++++...|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5566777777777777777766543
No 329
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=81.07 E-value=73 Score=33.08 Aligned_cols=225 Identities=15% Similarity=0.025 Sum_probs=120.4
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHH-HHHHcCChHHHHHHHHHHHhC----CCCCCHhhHHHHHH
Q 012126 212 CFNGDISIAYTLFNKMFERGVMPDV-------ESYRILMQ-GLCRKSQVNRAVDLLEDMLNK----GFVPDTLSYTTLLN 279 (470)
Q Consensus 212 ~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~ 279 (470)
....++++|..+..++...-..|+. ..++.+-. .....|++++|+++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3568899999988887654222221 12333322 233468889999888776653 22345666777778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---HH--HHHHhcCCHh--HHHHHHHhchhC--CCC----CCHHHHHH
Q 012126 280 SLCRKKKLREAYKLLCRMKVKGCNPDIVHYNT---VV--LGFCREGRAI--DACKVLEDMPSN--GCL----PNLVSYRT 346 (470)
Q Consensus 280 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---li--~~~~~~~~~~--~a~~~~~~m~~~--~~~----p~~~~~~~ 346 (470)
+..-.|++++|..+..+..+..-.-++..+.. +. ..+...|+.. +....+...... +-+ +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88889999999999877655422224433332 22 2345666333 333333333222 011 12234444
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHH
Q 012126 347 LVGGLCDQ-GMFDVAKKYMQLMISKGFSPHFSVS--HALIKGFCNVGKVDEACGVLEELLKAGEA----PHEDTWVMIVP 419 (470)
Q Consensus 347 li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~----p~~~~~~~l~~ 419 (470)
++.++.+. +...++..-+.--......+-...+ ..|+......|++++|...++++...... ++..+-...++
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 44444441 1122222222222222212222222 36778888999999999999988654322 23223333333
Q ss_pred H--HHcCCcHHHHHHHHHH
Q 012126 420 Q--ICAGEEMEKLGEVLNE 436 (470)
Q Consensus 420 ~--~~~~g~~~~a~~~~~~ 436 (470)
. ....|+.+++.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 2 3467888777766555
No 330
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=81.04 E-value=28 Score=30.67 Aligned_cols=87 Identities=8% Similarity=0.017 Sum_probs=47.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----
Q 012126 208 MRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCR---- 283 (470)
Q Consensus 208 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---- 283 (470)
|.++++.+++.++....-+--+.--+....+...-|-.|.+.+.+..+.++-..-....-.-+...|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5566666666666655444332221223344455555666777776666666555543222233346666655544
Q ss_pred -cCCHHHHHHHH
Q 012126 284 -KKKLREAYKLL 294 (470)
Q Consensus 284 -~~~~~~a~~~~ 294 (470)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 56777776665
No 331
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.27 E-value=33 Score=28.62 Aligned_cols=89 Identities=12% Similarity=0.065 Sum_probs=51.5
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 012126 211 FCFNGDISIAYTLFNKMFERGVMPD----VESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKK 286 (470)
Q Consensus 211 ~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 286 (470)
+.+.|++++|..-|...++...... ...|..-..++.+.+.++.|++--.+.++.+.. ...+...-..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhh
Confidence 4466777777777777666532222 223333445666677777777666666655432 22222233445666677
Q ss_pred HHHHHHHHHHHHHc
Q 012126 287 LREAYKLLCRMKVK 300 (470)
Q Consensus 287 ~~~a~~~~~~m~~~ 300 (470)
++.|++-|..+.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777777665
No 332
>PRK09687 putative lyase; Provisional
Probab=80.16 E-value=44 Score=29.94 Aligned_cols=134 Identities=16% Similarity=0.053 Sum_probs=59.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHhchhCCCCCCHHHHHHHH
Q 012126 270 DTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREG-RAIDACKVLEDMPSNGCLPNLVSYRTLV 348 (470)
Q Consensus 270 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li 348 (470)
+..+-...+.++.+.++ +.+...+-.+.+. ++...-...+.++.+.+ ....+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44444455555555554 3344444444432 23333333444444432 12344444444443 23445555555
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012126 349 GGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVP 419 (470)
Q Consensus 349 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 419 (470)
.++.+.|+. .+...+-...+.+ + .....+.++...|.. +|...+..+.+.. +|..+-...+.
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~ 275 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKAID 275 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHHHH
Confidence 556555553 3444333333332 1 123455555555553 4555555555422 34444443333
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.12 E-value=5.6 Score=21.74 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=20.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 012126 378 VSHALIKGFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (470)
+|..+...|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677778888888888888887765
No 334
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.78 E-value=16 Score=30.83 Aligned_cols=77 Identities=16% Similarity=0.103 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 012126 308 HYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISK--GFSPHFSVSHALIKG 385 (470)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~ 385 (470)
|.+..+..+.+.+...+++....+-++.+ +-|..+-..+++.+|-.|++++|..-++-.-.. ...+...+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556778889999999999988877653 335666777889999999999999988877663 223445677777755
No 335
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=79.74 E-value=30 Score=30.50 Aligned_cols=88 Identities=9% Similarity=0.021 Sum_probs=64.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----
Q 012126 242 LMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFC---- 317 (470)
Q Consensus 242 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~---- 317 (470)
=|++++..+++.+++...-+.-+.--+........-|-.|.|.+....+.++-..-....-+-+...|.+++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 4688899999999888766655433333455566667779999999999999888877544445556887776665
Q ss_pred -hcCCHhHHHHHH
Q 012126 318 -REGRAIDACKVL 329 (470)
Q Consensus 318 -~~~~~~~a~~~~ 329 (470)
-.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 469999999887
No 336
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=79.43 E-value=13 Score=33.64 Aligned_cols=51 Identities=16% Similarity=0.104 Sum_probs=27.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHhc
Q 012126 280 SLCRKKKLREAYKLLCRMKVKGCNP-DIVHYNTVVLGFCREGRAIDACKVLEDM 332 (470)
Q Consensus 280 ~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m 332 (470)
-|.+.|.+++|++.|..-... .| +.+++..-..+|.+...+..|..=....
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 355666666666666555443 23 5555555555666666655554443333
No 337
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=79.36 E-value=77 Score=32.25 Aligned_cols=186 Identities=15% Similarity=0.127 Sum_probs=107.5
Q ss_pred HHHHHHHHHhhcCCCCCCCHH--HHHHHHHHHH-ccCCchHHHHHHHHHhhCCCCCCH-----HHHHHHHHHHHHcCCch
Q 012126 76 LLAKEIFDYASRQPNFRHSNS--TYLILILKLG-RAKYFSLIDDILITLKSEHYPVTP-----SLFTYLIKIYAESNLPD 147 (470)
Q Consensus 76 ~~a~~~~~~~~~~~~~~~~~~--~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~ 147 (470)
..|++.++.+.++..++|..+ ++..+...+. ...+++.|+..+.+.....-.++- .....++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 356777777776554444333 4555566665 568899999999887544322221 12223667777666655
Q ss_pred hHHHHHHHHHhC----CCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCC---CCCCHHHHHHHHHHHH--hcCChh
Q 012126 148 RALKTFRSMLEF----NCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHG---VLPNTKSYNIMMRAFC--FNGDIS 218 (470)
Q Consensus 148 ~A~~~~~~~~~~----~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~--~~g~~~ 218 (470)
|+..+++.++. +..+-...+..+-..+....++...|.+.++.+.... ..|-..++..++.+.. ..+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 99988887652 2223333344331222212267888999998887532 2234444444554443 456567
Q ss_pred HHHHHHHHHHHCC---------CCCCHHHHHHHHHHHH--HcCChHHHHHHHHHH
Q 012126 219 IAYTLFNKMFERG---------VMPDVESYRILMQGLC--RKSQVNRAVDLLEDM 262 (470)
Q Consensus 219 ~a~~~~~~m~~~~---------~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~ 262 (470)
++.+.++++.... -.|-..+|..++..++ ..|+++.+.+.++++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777764322 1335566777766544 567766666665554
No 338
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=79.28 E-value=74 Score=32.02 Aligned_cols=37 Identities=11% Similarity=0.009 Sum_probs=0.0
Q ss_pred cCCcHHHHHHHHHHHHHccccCCceeeecccchhhHh
Q 012126 423 AGEEMEKLGEVLNEIVKVEIKGDTRIVEAGIGLEDYL 459 (470)
Q Consensus 423 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~ 459 (470)
+.|++.+|.+.+-.+++.++.|.......+.....++
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~lplL 543 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCDALPLL 543 (566)
T ss_dssp -------------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHh
Confidence 4577888888877777777777765555444443333
No 339
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.88 E-value=4.9 Score=24.10 Aligned_cols=20 Identities=25% Similarity=0.625 Sum_probs=9.0
Q ss_pred HHHHccCCHHHHHHHHHHHH
Q 012126 384 KGFCNVGKVDEACGVLEELL 403 (470)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~ 403 (470)
.+|...|+.+.|.+++++.+
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444444
No 340
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.78 E-value=4.1 Score=22.00 Aligned_cols=24 Identities=8% Similarity=0.093 Sum_probs=14.8
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHH
Q 012126 416 MIVPQICAGEEMEKLGEVLNEIVK 439 (470)
Q Consensus 416 ~l~~~~~~~g~~~~a~~~~~~m~~ 439 (470)
.+..++.+.|++++|.+.|+++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344555666666666666666664
No 341
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.33 E-value=43 Score=28.77 Aligned_cols=16 Identities=13% Similarity=0.075 Sum_probs=9.7
Q ss_pred HhcCChhHHHHHHHHH
Q 012126 212 CFNGDISIAYTLFNKM 227 (470)
Q Consensus 212 ~~~g~~~~a~~~~~~m 227 (470)
.-.+.+++|-++|.+.
T Consensus 25 gg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERA 40 (288)
T ss_pred CCCcchHHHHHHHHHH
Confidence 3345677777776653
No 342
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.51 E-value=3 Score=21.46 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCCchhHHHHHH
Q 012126 133 FTYLIKIYAESNLPDRALKTFR 154 (470)
Q Consensus 133 ~~~li~~~~~~g~~~~A~~~~~ 154 (470)
...+...+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445666666677777666654
No 343
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=77.05 E-value=79 Score=31.17 Aligned_cols=376 Identities=14% Similarity=0.087 Sum_probs=206.4
Q ss_pred HHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHc-cCCchHHHHHHHHHhhC-CCC-CCHHHHHHHHHHH
Q 012126 64 RVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGR-AKYFSLIDDILITLKSE-HYP-VTPSLFTYLIKIY 140 (470)
Q Consensus 64 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~li~~~ 140 (470)
.....-.+.|..+.+..+|+..... ++.+...|...+..+.. .++.+.....|+..... |.. .+...|...|..-
T Consensus 84 kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~e 161 (577)
T KOG1258|consen 84 KFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFE 161 (577)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHH
Confidence 4455556788899999999988643 46778888777765554 57777788888877655 221 2456788888888
Q ss_pred HHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhc----CCChhhHHHHHHHHHH--------------------CC
Q 012126 141 AESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTH----RNYLRPAFDLFKSAHK--------------------HG 196 (470)
Q Consensus 141 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~----~~~~~~a~~~~~~~~~--------------------~~ 196 (470)
..++++.....+++++++....--...+......+-.. ....+++.++-..... .+
T Consensus 162 n~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~ 241 (577)
T KOG1258|consen 162 NGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDST 241 (577)
T ss_pred hccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhcc
Confidence 88889999999999988732111111122111111110 1112333322222221 00
Q ss_pred CCCCHH--HHHHHH-------HHHHhcCChhHHHHHHHHHHHC---CC----CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 012126 197 VLPNTK--SYNIMM-------RAFCFNGDISIAYTLFNKMFER---GV----MPDVESYRILMQGLCRKSQVNRAVDLLE 260 (470)
Q Consensus 197 ~~~~~~--~~~~li-------~~~~~~g~~~~a~~~~~~m~~~---~~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 260 (470)
-+.+.. ..+.+- .++-..-...+....|+.-+++ .+ .++..+|..-+..-...|+.+.+.-+|+
T Consensus 242 ~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~e 321 (577)
T KOG1258|consen 242 DPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFE 321 (577)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHH
Confidence 000100 011111 1111111222222233332222 11 2356778888888889999999999998
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHhHHHHHHHhchhCCCCC
Q 012126 261 DMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGF-CREGRAIDACKVLEDMPSNGCLP 339 (470)
Q Consensus 261 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-~~~~~~~~a~~~~~~m~~~~~~p 339 (470)
.+.-- +..=...|--.+.-....|+.+.|..++..-.+.-++..+. ...+-..+ -..|+++.|..+++.+.+. . |
T Consensus 322 rcli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~-i~L~~a~f~e~~~n~~~A~~~lq~i~~e-~-p 397 (577)
T KOG1258|consen 322 RCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPI-IHLLEARFEESNGNFDDAKVILQRIESE-Y-P 397 (577)
T ss_pred HHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcH-HHHHHHHHHHhhccHHHHHHHHHHHHhh-C-C
Confidence 87532 11112233333444444599999988887776653332222 22222223 3467999999999998876 3 5
Q ss_pred CHHHH-HHHHHHHHhcCChHHHHH---HHHHHHHCCCCCCHHHHHHHHH-----HHHccCCHHHHHHHHHHHHHCCCCCC
Q 012126 340 NLVSY-RTLVGGLCDQGMFDVAKK---YMQLMISKGFSPHFSVSHALIK-----GFCNVGKVDEACGVLEELLKAGEAPH 410 (470)
Q Consensus 340 ~~~~~-~~li~~~~~~g~~~~a~~---~~~~~~~~~~~~~~~~~~~li~-----~~~~~g~~~~a~~~~~~~~~~~~~p~ 410 (470)
+.+-. ..-+....+.|+.+.+.. ++....+ |. -+..+...+.- .+.-.++.+.|..++.++.+. .+++
T Consensus 398 g~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~-~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~ 474 (577)
T KOG1258|consen 398 GLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GK-ENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDC 474 (577)
T ss_pred chhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-cc-cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCcc
Confidence 53322 122344556788887773 3333322 21 12122222221 234467899999999999885 4567
Q ss_pred HHHHHHHHHHHHcCC---cHHHHHHHHHHHHHccccCCcee
Q 012126 411 EDTWVMIVPQICAGE---EMEKLGEVLNEIVKVEIKGDTRI 448 (470)
Q Consensus 411 ~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~ 448 (470)
...|..++......+ +.+-..-++..+.+....+|...
T Consensus 475 k~~~~~~~~~~~~~~~~~e~d~~e~~~~~~~~~~~~~~~~~ 515 (577)
T KOG1258|consen 475 KVLYLELIRFELIQPSGREYDLLEPIDWKELKMLIDFDDSR 515 (577)
T ss_pred HHHHHHHHHHHHhCCcchhhhhhhhHHHHHHhhhccccccc
Confidence 778888888766554 22333344444544444444433
No 344
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.02 E-value=60 Score=32.98 Aligned_cols=91 Identities=19% Similarity=0.097 Sum_probs=37.4
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCC-CCCCHHHHHHHHHHH
Q 012126 62 PCRVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEH-YPVTPSLFTYLIKIY 140 (470)
Q Consensus 62 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~ 140 (470)
|.....++.-.|.++.|++++-. .+....+...+...+..++-.+-.+... ..+.... -.+.+--+..||..|
T Consensus 261 p~~Yf~~LlLtgqFE~AI~~L~~---~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y 334 (613)
T PF04097_consen 261 PLLYFQVLLLTGQFEAAIEFLYR---NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQY 334 (613)
T ss_dssp ---HHHHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHh---hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHH
Confidence 34555667777888888877664 1222344444444443332221111111 2221111 011123466788888
Q ss_pred HHc---CCchhHHHHHHHHHh
Q 012126 141 AES---NLPDRALKTFRSMLE 158 (470)
Q Consensus 141 ~~~---g~~~~A~~~~~~~~~ 158 (470)
++. .++.+|++.|--+..
T Consensus 335 ~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 335 TRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp HHTTTTT-HHHHHHHHHGGGG
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 773 456677777766554
No 345
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=76.16 E-value=1.7e+02 Score=34.47 Aligned_cols=320 Identities=12% Similarity=0.020 Sum_probs=159.2
Q ss_pred HHHHccCCchHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCC
Q 012126 103 LKLGRAKYFSLIDDILITLKSEHY--PVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRN 180 (470)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 180 (470)
.+-.+.+.+.+|...++.-..... ......+-.+...|+..+++|....+...-.. +...+..++..- ..|
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~qil~~e--~~g 1463 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQQILEHE--ASG 1463 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHHHHHHHH--hhc
Confidence 345566777777777776311111 11233444555689999999888777764211 233344444433 445
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCChHHHHHHH
Q 012126 181 YLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRIL-MQGLCRKSQVNRAVDLL 259 (470)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~ 259 (470)
.++.|...|+.+.+.+.. ...+++-+++.....|.++.+....+-.... ..+....++.+ +.+--+.++++.....+
T Consensus 1464 ~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred cHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 689999999999987632 4677887777777788888877765555433 22233333332 33445677777776665
Q ss_pred HHHHhCCCCCCHhhHHHH--HHHHHh--cCCHHHHHHHHHHHHHc--------CCCC-CHHHHHHHHHHHHhcCCHhHHH
Q 012126 260 EDMLNKGFVPDTLSYTTL--LNSLCR--KKKLREAYKLLCRMKVK--------GCNP-DIVHYNTVVLGFCREGRAIDAC 326 (470)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l--l~~~~~--~~~~~~a~~~~~~m~~~--------~~~~-~~~~~~~li~~~~~~~~~~~a~ 326 (470)
. +. +..+|... .....+ ..|.-.-.+..+.+.+. +..- =...|..++....-..--....
T Consensus 1542 ~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~ 1614 (2382)
T KOG0890|consen 1542 S---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIE 1614 (2382)
T ss_pred h---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 22 22222222 222221 22211111222222221 1110 1133444444332221111111
Q ss_pred HHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH-HHHHHC----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHH
Q 012126 327 KVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYM-QLMISK----GFS-PHFSVSHALIKGFCNVGKVDEACGVLE 400 (470)
Q Consensus 327 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~-~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~ 400 (470)
.+...=......-+..-|..-+..-....+..+-+--+ +.+... +.. --..+|-...+...+.|.++.|...+-
T Consensus 1615 ~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall 1694 (2382)
T KOG0890|consen 1615 ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALL 1694 (2382)
T ss_pred HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 11110000011111212222221111111111111111 111111 111 124577777888888999999988877
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcc
Q 012126 401 ELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVE 441 (470)
Q Consensus 401 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 441 (470)
...+.+ -+..+.-.++.+...|+...|+.++++.++..
T Consensus 1695 ~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1695 NAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 776654 23555566777888999999999999888653
No 346
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.05 E-value=47 Score=27.61 Aligned_cols=88 Identities=15% Similarity=0.048 Sum_probs=48.7
Q ss_pred HHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHH-----HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012126 314 LGFCREGRAIDACKVLEDMPSNGCLPNLVSYRT-----LVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCN 388 (470)
Q Consensus 314 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-----li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 388 (470)
..+...|++++|..-++..... |....+.. |.......|.+|+|+++++...+.++. ......-.+.+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHH
Confidence 3456666666666666655432 22222222 334455667777777776665554332 1223334456667
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 012126 389 VGKVDEACGVLEELLKAG 406 (470)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~ 406 (470)
.|+-++|..-|++.++.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 777777777777766654
No 347
>PHA02875 ankyrin repeat protein; Provisional
Probab=74.56 E-value=81 Score=30.08 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=17.2
Q ss_pred HHHHHHHCCCCCCHH--HHHHHHHHHHhcCChhHHHHHH
Q 012126 188 LFKSAHKHGVLPNTK--SYNIMMRAFCFNGDISIAYTLF 224 (470)
Q Consensus 188 ~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~ 224 (470)
+.+.+.+.|..|+.. .....+...+..|+.+.+..++
T Consensus 50 ~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 50 AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH
Confidence 444445555444322 1123344455666665554444
No 348
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=74.22 E-value=46 Score=27.29 Aligned_cols=14 Identities=14% Similarity=0.140 Sum_probs=5.8
Q ss_pred CCCHHHHHHHHHHH
Q 012126 303 NPDIVHYNTVVLGF 316 (470)
Q Consensus 303 ~~~~~~~~~li~~~ 316 (470)
.|+...|+.-+...
T Consensus 110 ~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 110 DPNNELYRKSLEMA 123 (186)
T ss_dssp -TT-HHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 45555555444443
No 349
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=73.84 E-value=70 Score=28.99 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHh----CCCccCHHHHHHHHHHHH
Q 012126 131 SLFTYLIKIYAESNLPDRALKTFRSMLE----FNCKPLPKQLNRILELLV 176 (470)
Q Consensus 131 ~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~~ll~~~~ 176 (470)
..+......|++-|+-+.|++.+++..+ .|.+.|...+..-+..++
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy 154 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFY 154 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhh
Confidence 4455566677777777777776665433 344445544444444444
No 350
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.80 E-value=65 Score=28.59 Aligned_cols=24 Identities=4% Similarity=0.119 Sum_probs=18.7
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHH
Q 012126 415 VMIVPQICAGEEMEKLGEVLNEIV 438 (470)
Q Consensus 415 ~~l~~~~~~~g~~~~a~~~~~~m~ 438 (470)
..++..+.+.|++.+|+.+.+.+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHH
Confidence 457778899999999988765553
No 351
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=73.08 E-value=70 Score=28.69 Aligned_cols=85 Identities=14% Similarity=0.062 Sum_probs=42.4
Q ss_pred cCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHc----cCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----
Q 012126 71 SQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGR----AKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAE---- 142 (470)
Q Consensus 71 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 142 (470)
..+++..+...+....... +......+...+.. ..+...|.+++......| .+.....|...|..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~----~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG----DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGV 125 (292)
T ss_pred ccccHHHHHHHHHHhhhcC----ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCc
Confidence 3455666666666554322 11222223322222 244566777776555554 33334445544444
Q ss_pred cCCchhHHHHHHHHHhCCCc
Q 012126 143 SNLPDRALKTFRSMLEFNCK 162 (470)
Q Consensus 143 ~g~~~~A~~~~~~~~~~~~~ 162 (470)
..+..+|...|++..+.|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNV 145 (292)
T ss_pred ccCHHHHHHHHHHHHHcCCh
Confidence 23566666666666665533
No 352
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=72.83 E-value=33 Score=28.13 Aligned_cols=67 Identities=10% Similarity=0.216 Sum_probs=44.1
Q ss_pred chHHHHHHHHHhhCCCCCCHH--------HHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCC
Q 012126 111 FSLIDDILITLKSEHYPVTPS--------LFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNY 181 (470)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 181 (470)
++.|..+|+.+.+.. +++.. +-...+-.|.+.|.+++|.++++++.. .|+......-|..+.+.++.
T Consensus 85 LESAl~v~~~I~~E~-~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd~ 159 (200)
T cd00280 85 LESALMVLESIEKEF-SLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKDP 159 (200)
T ss_pred HHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcccc
Confidence 467888888876664 22211 112255678889999999999999876 35555556666666655553
No 353
>PRK09687 putative lyase; Provisional
Probab=72.78 E-value=71 Score=28.62 Aligned_cols=227 Identities=13% Similarity=0.060 Sum_probs=141.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh----HHHHHHHHHHHhCCCCCCHhhH
Q 012126 199 PNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQV----NRAVDLLEDMLNKGFVPDTLSY 274 (470)
Q Consensus 199 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 274 (470)
+|.......+..+...|..+ +...+..+... +|...-...+.++...|+. +++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 56666666777777777533 33444444433 2556666667777777763 4677777766443 3466666
Q ss_pred HHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHH
Q 012126 275 TTLLNSLCRKKKL-----REAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVG 349 (470)
Q Consensus 275 ~~ll~~~~~~~~~-----~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 349 (470)
...+.++...+.. ..+...+...... ++..+-...+.++.+.++ .+++..+-.+.+. +|...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 6666666655421 2333444343332 356666677888888876 4567777666653 45555555666
Q ss_pred HHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHH
Q 012126 350 GLCDQG-MFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEME 428 (470)
Q Consensus 350 ~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 428 (470)
++.+.+ ....+...+..+.. .++..+-...+.++.+.|+ ..|...+-+.++.+ + .....+.++...|+.
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 666653 23456666666664 4577778888889999988 56777776666643 2 345678888888885
Q ss_pred HHHHHHHHHHHccccCCceeee
Q 012126 429 KLGEVLNEIVKVEIKGDTRIVE 450 (470)
Q Consensus 429 ~a~~~~~~m~~~~~~p~~~~~~ 450 (470)
+|...+..+.+.. ||..+..
T Consensus 252 ~a~p~L~~l~~~~--~d~~v~~ 271 (280)
T PRK09687 252 TLLPVLDTLLYKF--DDNEIIT 271 (280)
T ss_pred hHHHHHHHHHhhC--CChhHHH
Confidence 7889999888643 4555443
No 354
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.35 E-value=1.1e+02 Score=30.48 Aligned_cols=48 Identities=8% Similarity=-0.043 Sum_probs=28.3
Q ss_pred HHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHh
Q 012126 105 LGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLE 158 (470)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 158 (470)
..+.|+++.|.++..+. .++.-|..|.++..+.|++..|.+.|.....
T Consensus 647 al~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 34556666666554432 2444566677766667777766666665544
No 355
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=71.88 E-value=2.1e+02 Score=33.72 Aligned_cols=318 Identities=12% Similarity=0.055 Sum_probs=162.6
Q ss_pred HHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHH-HHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 012126 64 RVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILI-LKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAE 142 (470)
Q Consensus 64 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 142 (470)
.+.....+.+.+.+|+-.++.-.....-......+..++ ..|+..++++...-+...-.. ++. ....|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s-l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS-LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc-HHHHHHHHHh
Confidence 445566778889999988887321111011223344444 489999999998887764221 222 3344555677
Q ss_pred cCCchhHHHHHHHHHhCCCccC-HHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChhHH
Q 012126 143 SNLPDRALKTFRSMLEFNCKPL-PKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIM-MRAFCFNGDISIA 220 (470)
Q Consensus 143 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a 220 (470)
.|+++.|...|+.+.+.+ |+ ...++-++.... ..+.+..+.-..+-..... .+....|+.+ +.+--+.++++..
T Consensus 1462 ~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml-~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD--PDKEKHHSGVLKSML-AIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred hccHHHHHHHHHHhhcCC--CccccchhhHHHhhh-cccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhh
Confidence 899999999999999854 54 445555555554 3333555555444443321 2233444443 4455677888887
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH--HHHHHHc--CChHHHHHHHHHHHhC--------CCC-CCHhhHHHHHHHHHhcCCH
Q 012126 221 YTLFNKMFERGVMPDVESYRIL--MQGLCRK--SQVNRAVDLLEDMLNK--------GFV-PDTLSYTTLLNSLCRKKKL 287 (470)
Q Consensus 221 ~~~~~~m~~~~~~p~~~~~~~l--l~~~~~~--~~~~~a~~~~~~~~~~--------~~~-~~~~~~~~ll~~~~~~~~~ 287 (470)
..... +. +..+|... .....+. .|.-.-.+..+-+.+. +.. .-...|..++....-..
T Consensus 1538 e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-- 1608 (2382)
T KOG0890|consen 1538 ESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-- 1608 (2382)
T ss_pred hhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH--
Confidence 77665 22 22333332 2222222 2211111222222221 111 01123333433332211
Q ss_pred HHHHHHHHHHHHc----CCCCCHHHHHHHHH---HHHhcCCHhHHHH-HHHhchhC-CCC-CCHHHHHHHHHHHHhcCCh
Q 012126 288 REAYKLLCRMKVK----GCNPDIVHYNTVVL---GFCREGRAIDACK-VLEDMPSN-GCL-PNLVSYRTLVGGLCDQGMF 357 (470)
Q Consensus 288 ~~a~~~~~~m~~~----~~~~~~~~~~~li~---~~~~~~~~~~a~~-~~~~m~~~-~~~-p~~~~~~~li~~~~~~g~~ 357 (470)
-....+..... ...-+..-|-.-+. .+.+...+--|.+ .+...... +.. --..+|....+...+.|++
T Consensus 1609 --l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1609 --LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred --HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 11111111111 00111111222221 2222111111111 11111111 111 1345788888888889999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 012126 358 DVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKA 405 (470)
Q Consensus 358 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (470)
+.|...+-...+.+ .| ..+--........|+...|+.++++-++.
T Consensus 1687 q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 99998887777765 33 45566677788999999999999998754
No 356
>PRK13342 recombination factor protein RarA; Reviewed
Probab=71.59 E-value=97 Score=29.67 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=9.8
Q ss_pred CChhHHHHHHHHHHHCCCCCC
Q 012126 215 GDISIAYTLFNKMFERGVMPD 235 (470)
Q Consensus 215 g~~~~a~~~~~~m~~~~~~p~ 235 (470)
++.+.|+.++..|.+.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 444444444555544444433
No 357
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.09 E-value=73 Score=28.01 Aligned_cols=183 Identities=12% Similarity=0.138 Sum_probs=87.9
Q ss_pred cCCchhHHHHHHHHHhCCCccCHHHH---HHHHHHHHhcCCChhhHHHHHHHHHHC---CCC--CCHHHHHHHHHHHHhc
Q 012126 143 SNLPDRALKTFRSMLEFNCKPLPKQL---NRILELLVTHRNYLRPAFDLFKSAHKH---GVL--PNTKSYNIMMRAFCFN 214 (470)
Q Consensus 143 ~g~~~~A~~~~~~~~~~~~~p~~~~~---~~ll~~~~~~~~~~~~a~~~~~~~~~~---~~~--~~~~~~~~li~~~~~~ 214 (470)
...+++|+.-|.+.++..-.-...-+ ..++.... ..+.+++....|.+++.. .+. -+....|.++......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f-~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINF-RLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34677777777777663222222222 23333333 334466666666666521 111 1334456666655555
Q ss_pred CChhHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-----CCC------CCHhhHHHHH
Q 012126 215 GDISIAYTLFNKMFER-----GVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNK-----GFV------PDTLSYTTLL 278 (470)
Q Consensus 215 g~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~------~~~~~~~~ll 278 (470)
.+.+.-.+.|+.-.+. +-..=-.|-..|...|...+++.+..+++.++... |-. .-...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 5555554444433221 10001112234556666667777766666666432 110 0123455556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH-----HHhcCCHhHHHH
Q 012126 279 NSLCRKKKLREAYKLLCRMKVK-GCNPDIVHYNTVVLG-----FCREGRAIDACK 327 (470)
Q Consensus 279 ~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~-----~~~~~~~~~a~~ 327 (470)
.+|....+-.+...++++.... ..-|.+..... |+- ..+.|++++|..
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHh
Confidence 6666666666666666655432 12233333332 222 235566666543
No 358
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=70.99 E-value=10 Score=24.75 Aligned_cols=29 Identities=10% Similarity=0.071 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 012126 410 HEDTWVMIVPQICAGEEMEKLGEVLNEIV 438 (470)
Q Consensus 410 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 438 (470)
|..-.-.+|.+|...|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344455566666666666666665554
No 359
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=70.56 E-value=89 Score=28.83 Aligned_cols=192 Identities=10% Similarity=0.092 Sum_probs=95.2
Q ss_pred HHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCC----CCCHHHHHHHHHHHH
Q 012126 66 QKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHY----PVTPSLFTYLIKIYA 141 (470)
Q Consensus 66 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~ 141 (470)
.+...+.|+|+.-.+........ .++...|..+.. .+.++++++...++.....-. ......|........
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~---~~~~~~~~al~~--l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED---SPEYSFYRALLA--LRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC---ChhHHHHHHHHH--HhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 35566788888854444433311 233444444433 278888888888777644410 111222333333333
Q ss_pred HcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhc----CCChh---hHHHHHHHHHH--CCCCCCHHHHHHHHHHHH
Q 012126 142 ESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTH----RNYLR---PAFDLFKSAHK--HGVLPNTKSYNIMMRAFC 212 (470)
Q Consensus 142 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~----~~~~~---~a~~~~~~~~~--~~~~~~~~~~~~li~~~~ 212 (470)
+...+.+..++.+-..... .+......++...-.+ .++++ ..+.+-..+.+ ........+|..+.+.+.
T Consensus 80 ~lq~L~Elee~~~~~~~~~--~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLS--QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HHhHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 3333333333332221110 0122222222222211 11111 11111111221 112234567888888888
Q ss_pred hcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012126 213 FNGDISIAYTLFNKMFERGVMP---DVESYRILMQGLCRKSQVNRAVDLLEDMLN 264 (470)
Q Consensus 213 ~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 264 (470)
+.|.++.|...+..+...+... +......-+...-..|+..+|+..++...+
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999988888887654211 233444455666677888888888887776
No 360
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=69.72 E-value=21 Score=32.29 Aligned_cols=97 Identities=12% Similarity=0.020 Sum_probs=55.3
Q ss_pred hcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhH
Q 012126 70 ASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRA 149 (470)
Q Consensus 70 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 149 (470)
-.+|.+++|++.+....... ++++.++..-..+|.+.++|..|+.=.......+ ..-...|..-+.+-...|...+|
T Consensus 108 FKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 108 FKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHH
Confidence 34677888888887665433 4577777777788888888877776665554432 11222333333333334455555
Q ss_pred HHHHHHHHhCCCccCHHHHHHH
Q 012126 150 LKTFRSMLEFNCKPLPKQLNRI 171 (470)
Q Consensus 150 ~~~~~~~~~~~~~p~~~~~~~l 171 (470)
.+-++..++ +.|....+...
T Consensus 185 KkD~E~vL~--LEP~~~ELkK~ 204 (536)
T KOG4648|consen 185 KKDCETVLA--LEPKNIELKKS 204 (536)
T ss_pred HHhHHHHHh--hCcccHHHHHH
Confidence 555554444 44554444333
No 361
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.70 E-value=19 Score=24.75 Aligned_cols=17 Identities=6% Similarity=0.053 Sum_probs=7.0
Q ss_pred HHHHHHHHhcCCHhHHH
Q 012126 310 NTVVLGFCREGRAIDAC 326 (470)
Q Consensus 310 ~~li~~~~~~~~~~~a~ 326 (470)
..++.+|+..|++.+++
T Consensus 47 G~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 47 GYLIQAHMEWGKYREML 63 (80)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 362
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.47 E-value=1.6e+02 Score=31.21 Aligned_cols=27 Identities=26% Similarity=0.629 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHh
Q 012126 132 LFTYLIKIYAESNLPDRALKTFRSMLE 158 (470)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 158 (470)
-|..|+..|...|+.++|+++|.++..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 377899999999999999999998876
No 363
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=68.88 E-value=77 Score=27.42 Aligned_cols=118 Identities=11% Similarity=-0.056 Sum_probs=72.3
Q ss_pred HHccCCchHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChh
Q 012126 105 LGRAKYFSLIDDILITLKSEHYPVTP-SLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLR 183 (470)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 183 (470)
|...+++..|..-+.+.+... |+. .-|+.-+..|.+..+++.+..--.+.++ +.|+...-..++..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 445566777777666665553 444 4456677777778888777766666665 56777777777777766666678
Q ss_pred hHHHHHHHHHH----CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012126 184 PAFDLFKSAHK----HGVLPNTKSYNIMMRAFCFNGDISIAYTLFNK 226 (470)
Q Consensus 184 ~a~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 226 (470)
+++..+.+... ..+.+-...+..|..+--..=...+..++.++
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 88877777643 23334445556665554333344444444443
No 364
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.75 E-value=42 Score=24.40 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=13.0
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012126 385 GFCNVGKVDEACGVLEELLKAGEAPHEDTWVMI 417 (470)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 417 (470)
.+.+.|++++|..+.+.+ ..||...|..|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~AL 76 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLAL 76 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHH
Confidence 344445555554444433 23444444443
No 365
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=68.65 E-value=41 Score=25.63 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=15.7
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012126 264 NKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMK 298 (470)
Q Consensus 264 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 298 (470)
..++.|++......++++.+.+|+..|.++|+.+.
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443
No 366
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=68.40 E-value=22 Score=21.70 Aligned_cols=29 Identities=24% Similarity=0.196 Sum_probs=12.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012126 389 VGKVDEACGVLEELLKAGEAPHEDTWVMI 417 (470)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 417 (470)
.|-++++..++++|.+.|+..+...+..+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 34444444444444444444444444333
No 367
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=68.04 E-value=99 Score=28.38 Aligned_cols=61 Identities=7% Similarity=0.000 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 012126 219 IAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSL 281 (470)
Q Consensus 219 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 281 (470)
.-+.++++.++.+. -+...+..++..+.+..+.++..+.++++...... +...|...|+..
T Consensus 49 ~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~ 109 (321)
T PF08424_consen 49 RKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHH
Confidence 33455555555533 24455555566666666666666666666655332 444554444443
No 368
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=67.59 E-value=55 Score=32.22 Aligned_cols=102 Identities=15% Similarity=0.051 Sum_probs=64.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 012126 212 CFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAY 291 (470)
Q Consensus 212 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 291 (470)
.-.|+...|...+.........-.-+....|.+...+.|....|..++.+.+... ...+-++-.+.++|....++++|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3457777777776665443222233444456666667777777888777766654 225556777778888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH
Q 012126 292 KLLCRMKVKGCNPDIVHYNTVVLG 315 (470)
Q Consensus 292 ~~~~~m~~~~~~~~~~~~~~li~~ 315 (470)
+.|++..+.. +.+.+.-+.|...
T Consensus 697 ~~~~~a~~~~-~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 697 EAFRQALKLT-TKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHhcC-CCChhhHHHHHHH
Confidence 8888877653 2234444444443
No 369
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=67.12 E-value=96 Score=27.88 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=15.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHhhcC
Q 012126 64 RVQKLIASQSDPLLAKEIFDYASRQ 88 (470)
Q Consensus 64 ~l~~~~~~~~~~~~a~~~~~~~~~~ 88 (470)
.++-+....||.+.....++.....
T Consensus 35 ~vq~~~~~~gdle~vak~ldssg~~ 59 (412)
T KOG2297|consen 35 VVQGLEDNAGDLELVAKSLDSSGND 59 (412)
T ss_pred HHHHHHhcCccHHHHHHHHHhcccc
Confidence 3344455677777777776655433
No 370
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.38 E-value=92 Score=27.40 Aligned_cols=157 Identities=11% Similarity=0.071 Sum_probs=74.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhC---CC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH----HHHH
Q 012126 241 ILMQGLCRKSQVNRAVDLLEDMLNK---GF--VPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVK-GCNPDI----VHYN 310 (470)
Q Consensus 241 ~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~----~~~~ 310 (470)
.++..+.+.+++++..+.|.++... .+ .-+....|++++......+.+...+.++.-.+. .-..+. .|-.
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 3444555555555555555554321 01 112334455555554444444444443322211 000011 1123
Q ss_pred HHHHHHHhcCCHhHHHHHHHhchhC-----CC------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHH
Q 012126 311 TVVLGFCREGRAIDACKVLEDMPSN-----GC------LPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKG-FSPHFSV 378 (470)
Q Consensus 311 ~li~~~~~~~~~~~a~~~~~~m~~~-----~~------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~ 378 (470)
.+...|...|.+.+..++++++... |- ..-...|..=|+.|....+-.+...+++..+... --|.+.+
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 3445555566666666666655432 10 0112356666777777777777777777665421 2233333
Q ss_pred HHHHHHHH-----HccCCHHHHHHH
Q 012126 379 SHALIKGF-----CNVGKVDEACGV 398 (470)
Q Consensus 379 ~~~li~~~-----~~~g~~~~a~~~ 398 (470)
-.+|+-| .+.|++++|..-
T Consensus 230 -mGvIRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 230 -MGVIRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred -HhHHHHcCCccccccchHHHHHhH
Confidence 3344444 355777777643
No 371
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=65.97 E-value=49 Score=24.09 Aligned_cols=51 Identities=16% Similarity=0.326 Sum_probs=29.3
Q ss_pred HHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 012126 315 GFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKG 371 (470)
Q Consensus 315 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 371 (470)
.+...|+|++|..+.+.+ +.||...|..|.. .+.|..+++..-+..|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 345667777777666655 3466666655533 34555555555555555554
No 372
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=65.28 E-value=13 Score=19.06 Aligned_cols=25 Identities=4% Similarity=-0.090 Sum_probs=14.0
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH
Q 012126 414 WVMIVPQICAGEEMEKLGEVLNEIV 438 (470)
Q Consensus 414 ~~~l~~~~~~~g~~~~a~~~~~~m~ 438 (470)
|..+...+...|++++|...++..+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444555555566666666665554
No 373
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=64.60 E-value=26 Score=21.41 Aligned_cols=32 Identities=19% Similarity=0.382 Sum_probs=16.9
Q ss_pred HccCCchHHHHHHHHHhhCCCCCCHHHHHHHH
Q 012126 106 GRAKYFSLIDDILITLKSEHYPVTPSLFTYLI 137 (470)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 137 (470)
.+.|-.+++..+++.|.+.|+..++..+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34444555555555555555555555555444
No 374
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=63.23 E-value=35 Score=21.44 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=25.2
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHH
Q 012126 135 YLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILEL 174 (470)
Q Consensus 135 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 174 (470)
.+.-++.+.|++++|++..+.+++ +.|+......+...
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHH
Confidence 455667788888888888888887 56766655554443
No 375
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.16 E-value=51 Score=23.28 Aligned_cols=13 Identities=31% Similarity=0.419 Sum_probs=4.8
Q ss_pred CChhHHHHHHHHH
Q 012126 215 GDISIAYTLFNKM 227 (470)
Q Consensus 215 g~~~~a~~~~~~m 227 (470)
|+.+.|.+++..+
T Consensus 50 g~~~~ar~LL~~L 62 (88)
T cd08819 50 GNESGARELLKRI 62 (88)
T ss_pred CcHHHHHHHHHHh
Confidence 3333333333333
No 376
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.61 E-value=76 Score=30.26 Aligned_cols=212 Identities=12% Similarity=0.065 Sum_probs=105.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHhc
Q 012126 209 RAFCFNGDISIAYTLFNKMFERGVMPDVES--YRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTL--SYTTLLNSLCRK 284 (470)
Q Consensus 209 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~ 284 (470)
...+..|+.+.+.. +.+.|..|+... ..+.+...+..|+.+- .+.+.+.|..|+.. .....+...+..
T Consensus 7 ~~A~~~g~~~iv~~----Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 7 CDAILFGELDIARR----LLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHHhCCHHHHHH----HHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHC
Confidence 33456677655444 445677665433 2345556667777654 44455566655432 122344556677
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHH---HHHHHHHHHHhcCChHHHH
Q 012126 285 KKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLV---SYRTLVGGLCDQGMFDVAK 361 (470)
Q Consensus 285 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~ 361 (470)
|+.+.+..+++.-.......+... .+.+...+..|+.+-+. .+.+.|..|+.. -.+ .+...+..|+.+.+.
T Consensus 79 g~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~~iv~----~Ll~~gad~~~~~~~g~t-pLh~A~~~~~~~~v~ 152 (413)
T PHA02875 79 GDVKAVEELLDLGKFADDVFYKDG-MTPLHLATILKKLDIMK----LLIARGADPDIPNTDKFS-PLHLAVMMGDIKGIE 152 (413)
T ss_pred CCHHHHHHHHHcCCcccccccCCC-CCHHHHHHHhCCHHHHH----HHHhCCCCCCCCCCCCCC-HHHHHHHcCCHHHHH
Confidence 888776665543211100011111 23344445667765444 444455544432 222 334445667766544
Q ss_pred HHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHcCCcHHHHHHHHH
Q 012126 362 KYMQLMISKGFSPHF---SVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDT---WVMIVPQICAGEEMEKLGEVLN 435 (470)
Q Consensus 362 ~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~ 435 (470)
. +.+.|..++. .-.+.+. ..+..|+.+ +.+.+++.|..++... ...++......|+. ++.+
T Consensus 153 ~----Ll~~g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~ 219 (413)
T PHA02875 153 L----LIDHKACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVR 219 (413)
T ss_pred H----HHhcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHH
Confidence 4 4445543332 2223333 334456654 4455566776665432 12344434455654 4556
Q ss_pred HHHHccccCCce
Q 012126 436 EIVKVEIKGDTR 447 (470)
Q Consensus 436 ~m~~~~~~p~~~ 447 (470)
-+++.|..++..
T Consensus 220 ~Ll~~gad~n~~ 231 (413)
T PHA02875 220 LFIKRGADCNIM 231 (413)
T ss_pred HHHHCCcCcchH
Confidence 667778777754
No 377
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=62.56 E-value=66 Score=32.20 Aligned_cols=75 Identities=15% Similarity=0.149 Sum_probs=48.9
Q ss_pred HHHHHHHhcCCHhHHHHHHHhchhC--CCCCCHHHHHHHHHHHHhcCChH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 012126 311 TVVLGFCREGRAIDACKVLEDMPSN--GCLPNLVSYRTLVGGLCDQGMFD------VAKKYMQLMISKGFSPHFSVSHAL 382 (470)
Q Consensus 311 ~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~l 382 (470)
.|..+|...|++..+.++++.+... |-+.-...||..|..+.+.|.++ .|.+.++.. .+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 6888888888888888888887654 22333456777788888888654 233333332 245566777777
Q ss_pred HHHHHc
Q 012126 383 IKGFCN 388 (470)
Q Consensus 383 i~~~~~ 388 (470)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 766444
No 378
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=62.09 E-value=50 Score=23.65 Aligned_cols=22 Identities=14% Similarity=0.028 Sum_probs=13.5
Q ss_pred HHHHHcCCcHHHHHHHHHHHHH
Q 012126 418 VPQICAGEEMEKLGEVLNEIVK 439 (470)
Q Consensus 418 ~~~~~~~g~~~~a~~~~~~m~~ 439 (470)
.......|++++|.+.+++.++
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3344556667777666666654
No 379
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=62.07 E-value=1.5e+02 Score=28.49 Aligned_cols=111 Identities=16% Similarity=0.116 Sum_probs=65.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012126 186 FDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNK 265 (470)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 265 (470)
.+++..+......|+.....+ ..+...|+++.+...+...... +.....+...++....+.|++++|...-+-|...
T Consensus 310 ~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ 386 (831)
T PRK15180 310 QQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN 386 (831)
T ss_pred HHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc
Confidence 334444444433344443333 3345677888777776654332 2334566677777777788888888877777766
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012126 266 GFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 266 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 300 (470)
.+. ++.......-..-..|-++++...|+++...
T Consensus 387 eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 387 EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 655 4444433333344556777777777777654
No 380
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=61.49 E-value=49 Score=27.61 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 012126 373 SPHFSVSHALIKGFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 373 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (470)
.|+..+|..++.++...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555555544
No 381
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.74 E-value=1.6e+02 Score=27.70 Aligned_cols=63 Identities=5% Similarity=-0.005 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012126 202 KSYNIMMRAFCFNGDISIAYTLFNKMFERGV--MPDVESYRILMQGLCRKSQVNRAVDLLEDMLN 264 (470)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 264 (470)
..+.-+...|..+|+++.|++.|.+..+-.. +-....|-.+|..-.-.|+|.....+-.+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3455666667777777777777766544311 11223333444444555666666665555544
No 382
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=58.73 E-value=89 Score=24.66 Aligned_cols=24 Identities=4% Similarity=0.081 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHH
Q 012126 133 FTYLIKIYAESNLPDRALKTFRSM 156 (470)
Q Consensus 133 ~~~li~~~~~~g~~~~A~~~~~~~ 156 (470)
.|.++...+..+++.-.+.+++.+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l 65 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHL 65 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHH
Confidence 344444445555555555555544
No 383
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=58.25 E-value=22 Score=31.78 Aligned_cols=40 Identities=15% Similarity=0.098 Sum_probs=24.9
Q ss_pred CCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 012126 339 PNLV-SYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSV 378 (470)
Q Consensus 339 p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 378 (470)
||.. -|+..|..-.+.||+++|++++++..+.|+.--..+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 4433 345667777777777777777777777765433333
No 384
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.08 E-value=35 Score=28.46 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHh
Q 012126 127 PVTPSLFTYLIKIYAESNLPDRALKTFRSMLE 158 (470)
Q Consensus 127 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 158 (470)
.|++.++..++.++...|+.++|.++..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46777777777777777777777777777765
No 385
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=56.42 E-value=2e+02 Score=28.00 Aligned_cols=81 Identities=21% Similarity=0.303 Sum_probs=60.3
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHHcCCchhHHHHHHH
Q 012126 77 LAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKI-YAESNLPDRALKTFRS 155 (470)
Q Consensus 77 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~ 155 (470)
....+++.+.. .++.|...|...+..|.+.+.+.+...+|..|...+ |.++..|..-..- |-...+++.|..+|.+
T Consensus 89 rIv~lyr~at~--rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 89 RIVFLYRRATN--RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHH--hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 44556666643 356789999999999999998999999999998876 6677777654433 3334458999999988
Q ss_pred HHhCC
Q 012126 156 MLEFN 160 (470)
Q Consensus 156 ~~~~~ 160 (470)
-+..+
T Consensus 166 gLR~n 170 (568)
T KOG2396|consen 166 GLRFN 170 (568)
T ss_pred HhhcC
Confidence 77743
No 386
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=56.13 E-value=1.3e+02 Score=25.78 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=26.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHHcCChHHHHHHHHH
Q 012126 206 IMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQ----GLCRKSQVNRAVDLLED 261 (470)
Q Consensus 206 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~----~~~~~~~~~~a~~~~~~ 261 (470)
.-|....+.|+++.|++....+.-.-+.-|...+-.|.. -..+.|..++|+++.+.
T Consensus 69 ~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 69 LQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 345555677777777776666543322223322222221 12344555555555443
No 387
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.02 E-value=70 Score=22.61 Aligned_cols=9 Identities=33% Similarity=0.383 Sum_probs=3.2
Q ss_pred hHHHHHHHH
Q 012126 252 VNRAVDLLE 260 (470)
Q Consensus 252 ~~~a~~~~~ 260 (470)
.+.|.+++.
T Consensus 52 ~~~ar~LL~ 60 (88)
T cd08819 52 ESGARELLK 60 (88)
T ss_pred HHHHHHHHH
Confidence 333333333
No 388
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.64 E-value=35 Score=22.25 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=14.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHH
Q 012126 380 HALIKGFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~ 404 (470)
-.+|.+|...|++++|.++.+++.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456666666666666666666543
No 389
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=55.48 E-value=1.2e+02 Score=25.04 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012126 218 SIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKG 266 (470)
Q Consensus 218 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 266 (470)
++|.+.|++..+. .|+..+|+.-+.... +|-+++.++.+.+
T Consensus 97 ~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 97 EKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 3444444444443 566677766665542 3555555555544
No 390
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.38 E-value=1.4e+02 Score=25.86 Aligned_cols=21 Identities=5% Similarity=0.082 Sum_probs=12.5
Q ss_pred HhcCChHHHHHHHHHHHHCCC
Q 012126 352 CDQGMFDVAKKYMQLMISKGF 372 (470)
Q Consensus 352 ~~~g~~~~a~~~~~~~~~~~~ 372 (470)
+..+++.+|+.+|+++....+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 445666666666666655433
No 391
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.34 E-value=72 Score=23.69 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHhchh
Q 012126 309 YNTVVLGFCREGRAIDACKVLEDMPS 334 (470)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~m~~ 334 (470)
|..++..|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666666777777777666655
No 392
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=55.21 E-value=90 Score=31.35 Aligned_cols=90 Identities=13% Similarity=0.141 Sum_probs=57.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCCCHHHHHHH
Q 012126 241 ILMQGLCRKSQVNRAVDLLEDMLNKG--FVPDTLSYTTLLNSLCRKKKLR------EAYKLLCRMKVKGCNPDIVHYNTV 312 (470)
Q Consensus 241 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~------~a~~~~~~m~~~~~~~~~~~~~~l 312 (470)
.|+.+|..+|++..+.++++.+...+ -+.-...+|..|+.+.+.|.++ .|.+.+++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78889999999999999998887643 2333456777777788888654 3444444443 44577888888
Q ss_pred HHHHHhcCCHhHHHHHHHhch
Q 012126 313 VLGFCREGRAIDACKVLEDMP 333 (470)
Q Consensus 313 i~~~~~~~~~~~a~~~~~~m~ 333 (470)
+++-..--+-.-..-++.++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 776554322223333444433
No 393
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=54.29 E-value=74 Score=22.38 Aligned_cols=43 Identities=16% Similarity=0.372 Sum_probs=33.8
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHh
Q 012126 116 DILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLE 158 (470)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 158 (470)
++|+.....|++.++.+|..+++...-+--++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6888888888888888888888877766677777777777754
No 394
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=53.98 E-value=86 Score=28.21 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=23.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchh
Q 012126 291 YKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPS 334 (470)
Q Consensus 291 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 334 (470)
.++++.+.+.++.|.-.++.-+.-.+.+.=.+.+++.+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 34555555555555555555555555555555555555555544
No 395
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=53.04 E-value=46 Score=33.46 Aligned_cols=77 Identities=12% Similarity=0.051 Sum_probs=31.3
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchh
Q 012126 256 VDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPS 334 (470)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 334 (470)
....+.+...-+..+...-.-++..|.+.|-.+.|.++.+.+-..-. ...-|..-+..+.+.|+...+-.+.+.+.+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444444433333555556666777777777777777766544311 233456666667777777666555555543
No 396
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.17 E-value=1.1e+02 Score=23.54 Aligned_cols=44 Identities=9% Similarity=0.013 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 012126 394 EACGVLEELLKAGEAP-HEDTWVMIVPQICAGEEMEKLGEVLNEI 437 (470)
Q Consensus 394 ~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 437 (470)
.+.++|+.|..+|+-. -...|......+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 6666666666654422 3345566666666667777777666543
No 397
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=52.01 E-value=1e+02 Score=24.36 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHh
Q 012126 253 NRAVDLLEDMLN 264 (470)
Q Consensus 253 ~~a~~~~~~~~~ 264 (470)
-.|.++|+++.+
T Consensus 37 ~sAeei~~~l~~ 48 (145)
T COG0735 37 LSAEELYEELRE 48 (145)
T ss_pred CCHHHHHHHHHH
Confidence 333333333333
No 398
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=51.72 E-value=1.4e+02 Score=26.93 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=14.1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012126 271 TLSYTTLLNSLCRKKKLREAYKLLCRMK 298 (470)
Q Consensus 271 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 298 (470)
...-...++.+...|++..|++++.+..
T Consensus 127 v~~~~~~l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 127 VQQTQSRLQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3333444445555555555555555544
No 399
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=51.71 E-value=1e+02 Score=23.90 Aligned_cols=31 Identities=13% Similarity=0.059 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 012126 131 SLFTYLIKIYAESNLPDRALKTFRSMLEFNC 161 (470)
Q Consensus 131 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 161 (470)
.++..++--+...|+++.|+++.+..++.|.
T Consensus 49 ~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 49 DVLMTVMVWLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred chHHhhHhhhhcccCHHHHHHHHHHHHHcCC
Confidence 3455555556788889999988888888774
No 400
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=51.68 E-value=1.2e+02 Score=23.98 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=11.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHH
Q 012126 240 RILMQGLCRKSQVNRAVDLLEDM 262 (470)
Q Consensus 240 ~~ll~~~~~~~~~~~a~~~~~~~ 262 (470)
+.++.-....+++...+.+++.+
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l 65 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHL 65 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHH
Confidence 44444444445555555555444
No 401
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=51.30 E-value=2.2e+02 Score=26.93 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=37.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHh--cCCHhHHHHHHHhchhC
Q 012126 280 SLCRKKKLREAYKLLCRMKVKGCNPDIV--HYNTVVLGFCR--EGRAIDACKVLEDMPSN 335 (470)
Q Consensus 280 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~--~~~~~~a~~~~~~m~~~ 335 (470)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344678899999999988876 444443 45555566654 34567888888876654
No 402
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=50.99 E-value=1.7e+02 Score=25.43 Aligned_cols=141 Identities=16% Similarity=0.176 Sum_probs=89.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 012126 273 SYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLC 352 (470)
Q Consensus 273 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 352 (470)
+...-++.|.+.-++.-|....+++.+ ...+-.+ +--|.+..+..-.-++.+-....++.-+..-+..++ +.
T Consensus 132 AlRRtMEiyS~ttRFalaCN~s~KIiE-----PIQSRCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--ft 203 (333)
T KOG0991|consen 132 ALRRTMEIYSNTTRFALACNQSEKIIE-----PIQSRCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FT 203 (333)
T ss_pred HHHHHHHHHcccchhhhhhcchhhhhh-----hHHhhhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hh
Confidence 444556677777777777666666653 2233323 333555555554555555555566666666666554 46
Q ss_pred hcCChHHHHHHHHHHHHC-C-----------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012126 353 DQGMFDVAKKYMQLMISK-G-----------FSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQ 420 (470)
Q Consensus 353 ~~g~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 420 (470)
..|+..+|+.-++.-... | -.|.+.....++..|. .+++++|.+++.++-+.|+.|. ...+.+.+.
T Consensus 204 a~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~-Dii~~~FRv 281 (333)
T KOG0991|consen 204 AQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPE-DIITTLFRV 281 (333)
T ss_pred ccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHH-HHHHHHHHH
Confidence 789999999888765431 1 1466666677776655 5689999999999999998754 344555554
Q ss_pred HHc
Q 012126 421 ICA 423 (470)
Q Consensus 421 ~~~ 423 (470)
+-.
T Consensus 282 ~K~ 284 (333)
T KOG0991|consen 282 VKN 284 (333)
T ss_pred HHh
Confidence 433
No 403
>PRK11619 lytic murein transglycosylase; Provisional
Probab=50.42 E-value=3e+02 Score=28.27 Aligned_cols=180 Identities=13% Similarity=0.048 Sum_probs=83.5
Q ss_pred cCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 012126 214 NGDISIAYTLFNKMFERG-VMPD--VESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREA 290 (470)
Q Consensus 214 ~g~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 290 (470)
..+.+.|..++....... ..+. ..++..+.......+...++...+....... .+......-+....+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 344567777776654332 1111 1122223222222222445555554433221 1333334444455567777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhC------------CCC--------CCH-H-----HH
Q 012126 291 YKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSN------------GCL--------PNL-V-----SY 344 (470)
Q Consensus 291 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------------~~~--------p~~-~-----~~ 344 (470)
...+..|....- -...-.-=+.+++...|+.++|...|+.+... |.. |.. . .-
T Consensus 332 ~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~ 410 (644)
T PRK11619 332 NTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPE 410 (644)
T ss_pred HHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChH
Confidence 777777644321 12222333455555677777777777765321 111 000 0 00
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 012126 345 RTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVL 399 (470)
Q Consensus 345 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 399 (470)
..-+..+...|+...|...+..+.+. .+......+...-.+.|..+.+....
T Consensus 411 ~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~ 462 (644)
T PRK11619 411 MARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQAT 462 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 11123344556666666666666553 23333344444445566666555544
No 404
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=50.35 E-value=2e+02 Score=26.18 Aligned_cols=146 Identities=14% Similarity=0.115 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 012126 287 LREAYKLLCRMKVKGC----NPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKK 362 (470)
Q Consensus 287 ~~~a~~~~~~m~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 362 (470)
.+.|.+.|+.....+. ..+......++....+.|..+.-..+++..... .+...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 5677777887776422 334455556666667777766655555555543 366667778888888888888888
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHccCC--HHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHH
Q 012126 363 YMQLMISKG-FSPHFSVSHALIKGFCNVGK--VDEACGVLEE----LLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLN 435 (470)
Q Consensus 363 ~~~~~~~~~-~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~----~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 435 (470)
+++.+...+ +.+. .+ ..++.++...+. .+.+.+.+.+ +.+ ....+......++..+...-..++-.+-++
T Consensus 223 ~l~~~l~~~~v~~~-d~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 299 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQ-DI-RYVLAGLASSNPVGRDLAWEFFKENWDAIIK-KFGTNSSALSRVIKSFAGNFSTEEQLDELE 299 (324)
T ss_dssp HHHHHHCTSTS-TT-TH-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHC-HC-TTSHCCHHHHHCCCTT--SHHHHHHHH
T ss_pred HHHHHcCCcccccH-HH-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHH-HhcCCChHHHHHHHHHhccCCCHHHHHHHH
Confidence 888888754 4333 23 334444442333 3666666543 222 122222245555554443333333333444
Q ss_pred HHH
Q 012126 436 EIV 438 (470)
Q Consensus 436 ~m~ 438 (470)
++.
T Consensus 300 ~f~ 302 (324)
T PF11838_consen 300 EFF 302 (324)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 405
>PRK09857 putative transposase; Provisional
Probab=49.59 E-value=1.4e+02 Score=27.03 Aligned_cols=57 Identities=9% Similarity=0.149 Sum_probs=29.0
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHccccCC
Q 012126 388 NVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVEIKGD 445 (470)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 445 (470)
..|+.++..++++.+.+. .........++..-+.+.|.-+++.++..+|+..|+..+
T Consensus 218 ~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 218 QTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred hccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344444444555444433 222223333444555555555666667777776666554
No 406
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=49.12 E-value=1.1e+02 Score=22.75 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=20.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 012126 378 VSHALIKGFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (470)
-|..++..|...|..++|.+++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777778888888888888877765
No 407
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=48.67 E-value=22 Score=27.42 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=16.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012126 355 GMFDVAKKYMQLMISKGFSPHFSVSHALIKG 385 (470)
Q Consensus 355 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 385 (470)
|.-..|..+|.+|++.|-+|| .|+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 444556666666666666555 45555543
No 408
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=48.49 E-value=1.3e+02 Score=23.67 Aligned_cols=54 Identities=17% Similarity=0.102 Sum_probs=24.9
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHH
Q 012126 119 ITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILE 173 (470)
Q Consensus 119 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 173 (470)
..+.+.|+..++. -..++..+...+..-.|.++++++.+.+...+..|....|.
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~ 63 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLK 63 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHH
Confidence 3344445444432 33444555555555555555555555443333333333333
No 409
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=47.99 E-value=1.8e+02 Score=28.90 Aligned_cols=100 Identities=10% Similarity=-0.033 Sum_probs=58.8
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 012126 179 RNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDL 258 (470)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 258 (470)
.|....|...+.........-..+....|.....+.|-...|..++.+..... .....++-.+.+++....+.++|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 34455555555554433222223334445555666677777777776665543 22445666677788888888888888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHH
Q 012126 259 LEDMLNKGFVPDTLSYTTLLNS 280 (470)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~ll~~ 280 (470)
|++..+.... +...-+.|...
T Consensus 699 ~~~a~~~~~~-~~~~~~~l~~i 719 (886)
T KOG4507|consen 699 FRQALKLTTK-CPECENSLKLI 719 (886)
T ss_pred HHHHHhcCCC-ChhhHHHHHHH
Confidence 8887776544 44445555443
No 410
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=47.84 E-value=75 Score=20.74 Aligned_cols=49 Identities=29% Similarity=0.288 Sum_probs=29.6
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HcCCcHHHHHHHH
Q 012126 386 FCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQI-----CAGEEMEKLGEVL 434 (470)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~g~~~~a~~~~ 434 (470)
+.+.|++=+|.++++++-.....+....+..+|... .+.|+.+.|.+++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 455788888888888875432223455666666543 3567777776653
No 411
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=46.78 E-value=1.3e+02 Score=23.06 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=21.8
Q ss_pred HHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012126 327 KVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMIS 369 (470)
Q Consensus 327 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 369 (470)
+-++.+...++-|+......-+.+|.+.+++..|..+++-++.
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555555555443
No 412
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=46.64 E-value=1.3e+02 Score=27.19 Aligned_cols=71 Identities=17% Similarity=0.257 Sum_probs=53.2
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----------cCCHhHH
Q 012126 256 VDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCR----------EGRAIDA 325 (470)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----------~~~~~~a 325 (470)
.++|+.+.+.++.|.-.+|..+.-.+.+.=.+...+.+|+.+.. |..-|..++..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 56788888889999999988888888888889999999999876 33336667766653 3566666
Q ss_pred HHHHHh
Q 012126 326 CKVLED 331 (470)
Q Consensus 326 ~~~~~~ 331 (470)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 655554
No 413
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=46.41 E-value=44 Score=29.93 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=27.6
Q ss_pred CCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 012126 199 PNTKS-YNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESY 239 (470)
Q Consensus 199 ~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 239 (470)
||..+ |+..|+...+.||+++|++++++..+.|+.--..+|
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 44444 457777778888888888888888777765333333
No 414
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=46.33 E-value=1.1e+02 Score=22.65 Aligned_cols=21 Identities=14% Similarity=0.490 Sum_probs=11.0
Q ss_pred HHHHHHhcCCHhHHHHHHHhc
Q 012126 312 VVLGFCREGRAIDACKVLEDM 332 (470)
Q Consensus 312 li~~~~~~~~~~~a~~~~~~m 332 (470)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444455556666666655554
No 415
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=46.19 E-value=76 Score=24.68 Aligned_cols=72 Identities=19% Similarity=0.113 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHccC---CchHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHH
Q 012126 93 HSNSTYLILILKLGRAK---YFSLIDDILITLKSEHYPV-TPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPK 166 (470)
Q Consensus 93 ~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 166 (470)
++..+--.+.-++.+.. +.++.+.+++.+.+...|. .......|.-++.+.++++.++++.+.+.+ ..|+..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n~ 105 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNNR 105 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCcH
Confidence 45555555555666654 4566778888887633222 233344577788899999999999999887 345443
No 416
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.14 E-value=1.3e+02 Score=22.98 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHH
Q 012126 359 VAKKYMQLMISKGFSPH-FSVSHALIKGFCNVGKVDEACGVLEE 401 (470)
Q Consensus 359 ~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 401 (470)
.+..+|+.|..+|+-.. ...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777777665433 44666666777777888888777765
No 417
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=45.85 E-value=1.7e+02 Score=24.18 Aligned_cols=21 Identities=10% Similarity=0.265 Sum_probs=12.2
Q ss_pred HHHHHcCChHHHHHHHHHHHh
Q 012126 244 QGLCRKSQVNRAVDLLEDMLN 264 (470)
Q Consensus 244 ~~~~~~~~~~~a~~~~~~~~~ 264 (470)
..|.+.|.+++|.++++....
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345566666666666665544
No 418
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=45.73 E-value=1.1e+02 Score=21.66 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=22.3
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012126 257 DLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMK 298 (470)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 298 (470)
++|+-....|+..|..+|..+++...-+--.+....+++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555555555555555555555544444555555555543
No 419
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.45 E-value=1.1e+02 Score=22.28 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=36.8
Q ss_pred hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHH
Q 012126 112 SLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLN 169 (470)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 169 (470)
...++-++++...+.+..+-....|.-.|++.|+.+.|.+-|+.=.. .-|...+|-
T Consensus 54 ~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~fm 109 (121)
T COG4259 54 AALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVFM 109 (121)
T ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhHH
Confidence 34445566666665555566667777888889999888888876544 345544443
No 420
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=45.29 E-value=1.6e+02 Score=27.84 Aligned_cols=61 Identities=15% Similarity=-0.030 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHhhCC--CCCC-HHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 012126 96 STYLILILKLGRAKYFSLIDDILITLKSEH--YPVT-PSLFTYLIKIYAESNLPDRALKTFRSML 157 (470)
Q Consensus 96 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 157 (470)
.+...|++...-.|+.+...+.++.+.+.- ..|. ..+ -.+.-+|.-.|++.+|.++|-..+
T Consensus 236 fsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 236 FSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666777666666666654441 1111 112 235556666777788888776654
No 421
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.27 E-value=30 Score=26.65 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=12.2
Q ss_pred CCchhHHHHHHHHHhCCCccCH
Q 012126 144 NLPDRALKTFRSMLEFNCKPLP 165 (470)
Q Consensus 144 g~~~~A~~~~~~~~~~~~~p~~ 165 (470)
|.-.+|-.+|++|++.|-.||.
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc
Confidence 4444556666666666655543
No 422
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=45.08 E-value=1.8e+02 Score=24.24 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=33.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC--------C------CCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 012126 346 TLVGGLCDQGMFDVAKKYMQLMISK--------G------FSPHFSVSHALIKGFCNVGKVDEACGVLE 400 (470)
Q Consensus 346 ~li~~~~~~g~~~~a~~~~~~~~~~--------~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 400 (470)
+++-.|.+..++.++.++++.|.+. | ..+.-.+.|.-...|.+.|.+|.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 3455566666777777777766543 1 12233455566666666777777666665
No 423
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=44.55 E-value=55 Score=18.06 Aligned_cols=26 Identities=19% Similarity=0.456 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012126 391 KVDEACGVLEELLKAGEAPHEDTWVMIV 418 (470)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 418 (470)
.++.|..+|+..+. +.|++.+|....
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHHHH
Confidence 45677777777776 347777765543
No 424
>PRK13342 recombination factor protein RarA; Reviewed
Probab=43.57 E-value=3e+02 Score=26.34 Aligned_cols=36 Identities=19% Similarity=0.089 Sum_probs=21.0
Q ss_pred cCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc
Q 012126 319 EGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQ 354 (470)
Q Consensus 319 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 354 (470)
..+.+.|+..+..|.+.|..|....-..++.++..-
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 356667777777777766666554444444444433
No 425
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.14 E-value=4.9e+02 Score=28.61 Aligned_cols=129 Identities=13% Similarity=0.108 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012126 308 HYNTVVLGFCREGRAIDACKVLEDMPSNGCLPN----LVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALI 383 (470)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 383 (470)
-|..+++.+-+.+..+.+.++-....+. ..++ ..+++.+..-....|.+-+|.+.+-.-.. ......+..-++
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlv 1061 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHH
Confidence 3667778888888888888877666654 2222 34566677777777877777665533211 111234666777
Q ss_pred HHHHccCCHHH------------HHH-HHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHH-HHHHHH
Q 012126 384 KGFCNVGKVDE------------ACG-VLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEV-LNEIVK 439 (470)
Q Consensus 384 ~~~~~~g~~~~------------a~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 439 (470)
..++.+|.++. ... +++..-+.........|..|...+...+++.+|-.+ |+....
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamr 1131 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMR 1131 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 77777776543 333 233322322222334566666666788888877655 444443
No 426
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=42.69 E-value=2.9e+02 Score=25.89 Aligned_cols=125 Identities=11% Similarity=0.069 Sum_probs=76.4
Q ss_pred CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHCCCCCCHHHH
Q 012126 127 PVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVT--HRNYLRPAFDLFKSAHKHGVLPNTKSY 204 (470)
Q Consensus 127 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~ 204 (470)
|-...++..+-..+...|+.+.|.+++++.+-.- ...++..+..+.. ..|.. -......-|...|
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~~F~~~~~~~~~g~~---------rL~~~~~eNR~ff 103 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHPSFSPFRSNLTSGNC---------RLDYRRPENRQFF 103 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccCcc---------ccCCccccchHHH
Confidence 6677888888888999999988888888765310 0111111111000 00100 0001111245555
Q ss_pred HHH---HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHh
Q 012126 205 NIM---MRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLC-RKSQVNRAVDLLEDMLN 264 (470)
Q Consensus 205 ~~l---i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~ 264 (470)
-++ |..+.+.|.+..|.++.+-+...++.-|......+|..|+ +.++++-.+++.+....
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 443 5677888999999999988888776656777667777665 56777777887777554
No 427
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=42.24 E-value=2.8e+02 Score=25.49 Aligned_cols=118 Identities=9% Similarity=-0.001 Sum_probs=68.6
Q ss_pred hHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCCHHHHHHHH
Q 012126 323 IDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCN---VGKVDEACGVL 399 (470)
Q Consensus 323 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~ 399 (470)
+.-+.++++..+.+ +-+...+..++..+.+..+.++..+.++++.... +-+...|...++.... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34455666666553 2345566666777777777777777777777652 3356666666655433 23456666666
Q ss_pred HHHHHC------CC----CCCHH-------HHHHHHHHHHcCCcHHHHHHHHHHHHHccc
Q 012126 400 EELLKA------GE----APHED-------TWVMIVPQICAGEEMEKLGEVLNEIVKVEI 442 (470)
Q Consensus 400 ~~~~~~------~~----~p~~~-------~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 442 (470)
.+.++. +. .+... .+..+...+...|-.+.|+.+++-+++.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 554422 11 00111 222333334578888888888888888766
No 428
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=42.05 E-value=3e+02 Score=28.87 Aligned_cols=104 Identities=10% Similarity=0.079 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-------------CCCCHHHHHHHHHHH
Q 012126 356 MFDVAKKYMQLMIS-KGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAG-------------EAPHEDTWVMIVPQI 421 (470)
Q Consensus 356 ~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------------~~p~~~~~~~l~~~~ 421 (470)
..++..+.++.+.+ .|+..+......+... ..|++.+|+.++++....+ -..+...+..++.++
T Consensus 179 s~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL 256 (830)
T PRK07003 179 PAGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL 256 (830)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH
Q ss_pred HcCCcHHHHHHHHHHHHHccccCCceeeecccchhhHhhHH
Q 012126 422 CAGEEMEKLGEVLNEIVKVEIKGDTRIVEAGIGLEDYLIGK 462 (470)
Q Consensus 422 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~ 462 (470)
.. |+..+++.+++++...|+......-..+..+......+
T Consensus 257 ~~-~d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~~~~~~q 296 (830)
T PRK07003 257 AA-GDGPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQ 296 (830)
T ss_pred Hc-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
No 429
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.01 E-value=1.5e+02 Score=25.95 Aligned_cols=57 Identities=18% Similarity=0.172 Sum_probs=33.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHh----CCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 012126 241 ILMQGLCRKSQVNRAVDLLEDMLN----KGF-VPDTLSYTTLLNSLCRKKKLREAYKLLCRM 297 (470)
Q Consensus 241 ~ll~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 297 (470)
.+...|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.+....+--++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455666667777777777666532 232 234455556666666677766666554443
No 430
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=41.17 E-value=90 Score=19.59 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=9.3
Q ss_pred HHHccCCHHHHHHHHHHHHH
Q 012126 385 GFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~ 404 (470)
++.+.|++++|.+..+.+++
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 34445555555555555444
No 431
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=41.06 E-value=1e+02 Score=20.13 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=7.7
Q ss_pred hcCCHhHHHHHHHhch
Q 012126 318 REGRAIDACKVLEDMP 333 (470)
Q Consensus 318 ~~~~~~~a~~~~~~m~ 333 (470)
..|++-+|.++++++-
T Consensus 11 n~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELW 26 (62)
T ss_dssp HTT-HHHHHHHHHHHC
T ss_pred cCCCHHHhHHHHHHHH
Confidence 3455555555555543
No 432
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=40.81 E-value=97 Score=23.06 Aligned_cols=23 Identities=17% Similarity=-0.002 Sum_probs=10.7
Q ss_pred HHHHccCCchHHHHHHHHHhhCC
Q 012126 103 LKLGRAKYFSLIDDILITLKSEH 125 (470)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~ 125 (470)
+.+.++...++|+++++.|.++|
T Consensus 69 D~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 69 DYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhC
Confidence 33444444444555544444444
No 433
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=40.61 E-value=37 Score=32.35 Aligned_cols=103 Identities=15% Similarity=0.004 Sum_probs=66.5
Q ss_pred HHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccC
Q 012126 313 VLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRT-LVGGLCDQGMFDVAKKYMQLMISKGFSPH-FSVSHALIKGFCNVG 390 (470)
Q Consensus 313 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g 390 (470)
..-+...+.++.|..++.+..+. .||...|-. =..++.+.+++..|+.=..++++.. |. ...|.--..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 34456677888888888888874 566554433 3467788888888888777777753 33 223333334555566
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012126 391 KVDEACGVLEELLKAGEAPHEDTWVMIVPQI 421 (470)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 421 (470)
.+.+|...|+.... +.|+..-....+.-|
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 67777777776655 557776666665543
No 434
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=40.43 E-value=2.7e+02 Score=24.95 Aligned_cols=98 Identities=17% Similarity=0.279 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHhCCCCCCH---
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFE----RGVMPDVESYRI-LMQGLCRKSQVNRAVDLLEDMLNKGFVPDT--- 271 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 271 (470)
-...+..+...|++.++.+.+.++..+..+ .|.+.|+....+ |.-.|....-.++-++..+.|.+.|-.-+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 456777888899999999988887776544 355555433222 222344444467777788888888754322
Q ss_pred -hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012126 272 -LSYTTLLNSLCRKKKLREAYKLLCRMKV 299 (470)
Q Consensus 272 -~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 299 (470)
.+|..+..+ ...++.+|-.++-....
T Consensus 194 yK~Y~Gi~~m--~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 194 YKVYKGIFKM--MRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHHH--HHHhhHHHHHHHHHHhc
Confidence 233333222 23567777777766654
No 435
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=40.38 E-value=4.1e+02 Score=26.89 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHH
Q 012126 199 PNTKSYNIMMRAFCFNGDISIAYTLF 224 (470)
Q Consensus 199 ~~~~~~~~li~~~~~~g~~~~a~~~~ 224 (470)
||....|..++.....|...+...+-
T Consensus 161 p~~l~L~faik~IsdaG~~~Ei~s~~ 186 (584)
T PF04858_consen 161 PDCLFLNFAIKLISDAGYQHEITSVS 186 (584)
T ss_pred CCCHHHHHHHHHHHHcchHHHHHhHH
Confidence 67777777777777777766654443
No 436
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=40.34 E-value=1.4e+02 Score=21.37 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=13.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHh
Q 012126 243 MQGLCRKSQVNRAVDLLEDMLN 264 (470)
Q Consensus 243 l~~~~~~~~~~~a~~~~~~~~~ 264 (470)
.......|++++|.+.+++.++
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3445556666666666666553
No 437
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.28 E-value=3.9e+02 Score=26.67 Aligned_cols=193 Identities=12% Similarity=0.066 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHcCC-------chhHHHHHHHHHhCCCcc-------------CHHHHHHHHHHHHh--cCCChhh
Q 012126 127 PVTPSLFTYLIKIYAESNL-------PDRALKTFRSMLEFNCKP-------------LPKQLNRILELLVT--HRNYLRP 184 (470)
Q Consensus 127 ~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~~~~p-------------~~~~~~~ll~~~~~--~~~~~~~ 184 (470)
|-.....-.+.+++-..|+ ++.++-.|+......+.| +...|..+...+.. ++|.+..
T Consensus 281 PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rT 360 (665)
T KOG2422|consen 281 PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRT 360 (665)
T ss_pred CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHH
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012126 185 AFDLFKSAHKHGVLPNTKSYNIMMRAFC-FNGDISIAYTLFNKMFERG--VMPDVESYRILMQGLCRKSQVNRAVDLLED 261 (470)
Q Consensus 185 a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 261 (470)
|+++.+-+.+....-|+.....+|+.|+ ++++++-.+++++.....+ -......|+..+..+.-.++.+.+.+.-..
T Consensus 361 A~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~ 440 (665)
T KOG2422|consen 361 ALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALN 440 (665)
T ss_pred HHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHH
Q ss_pred HHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 012126 262 MLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGR 321 (470)
Q Consensus 262 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 321 (470)
.....+..-+.+.+-|++.+.- ..+.+...++.....--.+...++..++..|.....
T Consensus 441 ~l~qAl~~~P~vl~eLld~~~l--~~da~~~~~k~~~~~a~~~e~pal~~lv~lY~~r~~ 498 (665)
T KOG2422|consen 441 ALLQALKHHPLVLSELLDELLL--GDDALTKDLKFDGSSAENSELPALMLLVKLYANRNE 498 (665)
T ss_pred HHHHHHHhCcHHHHHHHHhccC--CchhhhhhhcccccccccccchHHHHHHHHHHhhhh
No 438
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=40.28 E-value=2.4e+02 Score=24.13 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=13.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC
Q 012126 207 MMRAFCFNGDISIAYTLFNKMFER 230 (470)
Q Consensus 207 li~~~~~~g~~~~a~~~~~~m~~~ 230 (470)
+.....+.|+.++|.+.|.++...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 334445556666666666555544
No 439
>PRK10941 hypothetical protein; Provisional
Probab=40.25 E-value=2.7e+02 Score=24.81 Aligned_cols=77 Identities=18% Similarity=0.112 Sum_probs=54.7
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhC-CCccCHHHHHHHHHHH
Q 012126 98 YLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEF-NCKPLPKQLNRILELL 175 (470)
Q Consensus 98 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~~ 175 (470)
...+-..+.+.++++.|....+.+.... |.++.-+.--.-.|.+.|.+..|..=++..++. .-.|+.......+..+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 3445566788899999999999888775 667777777778888999999998888877653 2334444444444443
No 440
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=40.11 E-value=3e+02 Score=25.24 Aligned_cols=97 Identities=19% Similarity=0.215 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHhCCCCCC----H
Q 012126 201 TKSYNIMMRAFCFNGDISIAYTLFNKMFE----RGVMPDVESYRILMQG-LCRKSQVNRAVDLLEDMLNKGFVPD----T 271 (470)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~----~ 271 (470)
...+-....-||+.|+.+.|.+.+.+..+ .|.+.|+.-+.+-+.. |....-..+-++..+.+.+.|-.-+ .
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 34566667889999999999988876544 4677776665544433 3333334555555666666665332 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012126 272 LSYTTLLNSLCRKKKLREAYKLLCRMKV 299 (470)
Q Consensus 272 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 299 (470)
.+|..+-. ....++.+|-.+|-....
T Consensus 184 KvY~Gly~--msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 184 KVYQGLYC--MSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHH--HHHHhHHHHHHHHHHHcc
Confidence 34443332 234688888888776654
No 441
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=39.47 E-value=58 Score=16.92 Aligned_cols=29 Identities=17% Similarity=0.351 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012126 390 GKVDEACGVLEELLKAGEAPHEDTWVMIVP 419 (470)
Q Consensus 390 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 419 (470)
|+.+.|..+|+.++... +-+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHHH
Confidence 45667777777776542 235556655544
No 442
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.16 E-value=30 Score=31.44 Aligned_cols=94 Identities=11% Similarity=0.065 Sum_probs=56.3
Q ss_pred ccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHH
Q 012126 107 RAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAF 186 (470)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~ 186 (470)
..|.++.|++.+...+... ++....|..-..++.+.+++..|++=++...+ +.||...-..+-...-+..|.++++.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHH
Confidence 4466777777777776665 55666666667777777777777777766665 33443322222222222345577777
Q ss_pred HHHHHHHHCCCCCCHHH
Q 012126 187 DLFKSAHKHGVLPNTKS 203 (470)
Q Consensus 187 ~~~~~~~~~~~~~~~~~ 203 (470)
..|+...+.++.+....
T Consensus 203 ~dl~~a~kld~dE~~~a 219 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSA 219 (377)
T ss_pred HHHHHHHhccccHHHHH
Confidence 77777777665544433
No 443
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=39.15 E-value=51 Score=21.79 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012126 374 PHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICA 423 (470)
Q Consensus 374 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 423 (470)
|....++.+++.+++-.-+++++..+.++.+.|. .+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3445566666666666666667777766666654 355566555555544
No 444
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=38.63 E-value=3.2e+02 Score=28.31 Aligned_cols=84 Identities=13% Similarity=0.057 Sum_probs=52.5
Q ss_pred HhHHHHHHHhc-hhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CC----------CCHHHHHHHHHHHH
Q 012126 322 AIDACKVLEDM-PSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKG---FS----------PHFSVSHALIKGFC 387 (470)
Q Consensus 322 ~~~a~~~~~~m-~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~----------~~~~~~~~li~~~~ 387 (470)
.++....+... ...|+..+......++... .|++..++.+++++...| +. .+......+++++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 34445555443 3457777777777776644 589999999998877643 11 12223344455444
Q ss_pred ccCCHHHHHHHHHHHHHCCCC
Q 012126 388 NVGKVDEACGVLEELLKAGEA 408 (470)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~ 408 (470)
.++...++.+++++...|..
T Consensus 258 -~~d~~~al~~l~~L~~~G~d 277 (709)
T PRK08691 258 -NQDGAALLAKAQEMAACAVG 277 (709)
T ss_pred -cCCHHHHHHHHHHHHHhCCC
Confidence 37778888888888877754
No 445
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=38.57 E-value=3.5e+02 Score=25.60 Aligned_cols=56 Identities=20% Similarity=0.337 Sum_probs=37.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--HcCChHHHHHHHHHHHhC
Q 012126 209 RAFCFNGDISIAYTLFNKMFERGVMPDVE--SYRILMQGLC--RKSQVNRAVDLLEDMLNK 265 (470)
Q Consensus 209 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 265 (470)
..+...+++..|.++|+++..+ +.++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444788888888888888876 444443 3444445443 356677888888876654
No 446
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.30 E-value=1.6e+02 Score=25.82 Aligned_cols=59 Identities=14% Similarity=0.123 Sum_probs=35.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 012126 380 HALIKGFCNVGKVDEACGVLEELLK----AGE-APHEDTWVMIVPQICAGEEMEKLGEVLNEIV 438 (470)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~----~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 438 (470)
..+...|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.++.+.+.=++.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3455667777777777777777632 222 1233355566666677777777766655443
No 447
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.14 E-value=20 Score=32.57 Aligned_cols=90 Identities=18% Similarity=0.094 Sum_probs=40.8
Q ss_pred HcCCchhHHHHHHHHHhCCCccCHHHHHHH-HHHHHhcCCChhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhH
Q 012126 142 ESNLPDRALKTFRSMLEFNCKPLPKQLNRI-LELLVTHRNYLRPAFDLFKSAHKHGVLPNT-KSYNIMMRAFCFNGDISI 219 (470)
Q Consensus 142 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~ 219 (470)
..|.++.|++.|...+..+ |....+..- -..+. ..+....|+.=++.....+ ||. .-|-.=-.+-.-.|++++
T Consensus 126 n~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~l-kl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN--PPLAILYAKRASVFL-KLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred cCcchhhhhcccccccccC--Cchhhhcccccceee-eccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHH
Confidence 3556667777666666532 332222211 11111 2222444555454444432 221 112222223334567777
Q ss_pred HHHHHHHHHHCCCCCCH
Q 012126 220 AYTLFNKMFERGVMPDV 236 (470)
Q Consensus 220 a~~~~~~m~~~~~~p~~ 236 (470)
|...|....+.+..+..
T Consensus 201 aa~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHHHhccccHHH
Confidence 77777766666554433
No 448
>PRK11619 lytic murein transglycosylase; Provisional
Probab=37.98 E-value=4.7e+02 Score=26.93 Aligned_cols=182 Identities=9% Similarity=-0.029 Sum_probs=105.3
Q ss_pred cCChHHHHHHHHHHHhCC-CCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHH
Q 012126 249 KSQVNRAVDLLEDMLNKG-FVPDT--LSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDA 325 (470)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 325 (470)
..+.+.|..++....... ..+.. .++..+....+..+...++...++...... .+......-+..-.+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 455677888887764433 22111 223333333333322456666666544332 2333344445555688999999
Q ss_pred HHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------------CCCCC------HHH---H-----
Q 012126 326 CKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISK------------GFSPH------FSV---S----- 379 (470)
Q Consensus 326 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------------~~~~~------~~~---~----- 379 (470)
...+..|.... .-...-..=+..++...|+.++|...|+.+... |.++. ... +
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~ 410 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPE 410 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChH
Confidence 99999986642 223333444667777789999999999886432 22200 000 0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 012126 380 HALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNE 436 (470)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 436 (470)
-.-+..+...|....|...+..+.+. .+......+.....+.|.++.++.....
T Consensus 411 ~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 411 MARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 11234456678888888888887764 3455556666666677777777665543
No 449
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=37.29 E-value=2.8e+02 Score=24.12 Aligned_cols=40 Identities=15% Similarity=0.068 Sum_probs=17.9
Q ss_pred HHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 012126 101 LILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIY 140 (470)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 140 (470)
++..+-+.++++++...+..+...+...+..-.+.|-.+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 3344444555555555555555544444444444444444
No 450
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=36.75 E-value=3.4e+02 Score=24.90 Aligned_cols=18 Identities=17% Similarity=0.486 Sum_probs=8.5
Q ss_pred HHcCChHHHHHHHHHHHh
Q 012126 247 CRKSQVNRAVDLLEDMLN 264 (470)
Q Consensus 247 ~~~~~~~~a~~~~~~~~~ 264 (470)
.+.|+..+|.+.++++.+
T Consensus 286 RklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HHhhhHHHHHHHHHHHhh
Confidence 344555555555544433
No 451
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=36.47 E-value=2.3e+02 Score=23.07 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=17.0
Q ss_pred cCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC
Q 012126 319 EGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQG 355 (470)
Q Consensus 319 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 355 (470)
.++.-.|.++++.+.+.+...+..|....+..+...|
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3444445555555555444444444333444444444
No 452
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.02 E-value=3.9e+02 Score=25.39 Aligned_cols=56 Identities=9% Similarity=-0.004 Sum_probs=37.0
Q ss_pred HHhcCCChhhHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 012126 175 LVTHRNYLRPAFDLFKSAHKHGV--LPNTKSYNIMMRAFCFNGDISIAYTLFNKMFER 230 (470)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 230 (470)
.+...|+++.|++.|.+.+..-- +-....|-.+|..-...|+|..+..+..+....
T Consensus 159 hy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 159 HYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 33356678888888888654321 113445666777777788888888887776654
No 453
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=35.96 E-value=3.2e+02 Score=24.40 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=9.1
Q ss_pred ChHHHHHHHHHHHHCC
Q 012126 356 MFDVAKKYMQLMISKG 371 (470)
Q Consensus 356 ~~~~a~~~~~~~~~~~ 371 (470)
+..+|...|....+.|
T Consensus 206 d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 206 DLKKAFRWYKKAAEQG 221 (292)
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4555555665555554
No 454
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=35.73 E-value=5.1e+02 Score=28.13 Aligned_cols=198 Identities=15% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHHHcc-CCchHHHHHHHHHhhCCCCCCHHHHHHHH--
Q 012126 63 CRVQKLIASQSDPLLAKEIFDYASRQPN--FRHSNSTYLILILKLGRA-KYFSLIDDILITLKSEHYPVTPSLFTYLI-- 137 (470)
Q Consensus 63 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li-- 137 (470)
....+-+...+++.+|..+.+.-.-+-+ +.+++..|..-+..+.+. ++.+-.-.++..+.+.+ .+...|....
T Consensus 698 L~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~ED--vt~tmY~~~~~~ 775 (928)
T PF04762_consen 698 LAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNED--VTKTMYKDTYPP 775 (928)
T ss_pred HHHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhccccc--cccccccccccc
Q ss_pred ----------HHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 012126 138 ----------KIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIM 207 (470)
Q Consensus 138 ----------~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 207 (470)
......+++...-+.+....+....++....+.+-....+..-++++|+.+..++++.+...-......|
T Consensus 776 ~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl 855 (928)
T PF04762_consen 776 SSEAQPNSNSSTASSESKVNKICDAIRKALEKPKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYL 855 (928)
T ss_pred ccccccccccCCCccccHHHHHHHHHHHHhcccccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHh
Q ss_pred HHHHHhcCChhHHHHHHH----HHHHCCCCCCHHHHHHHHHHHHH-------------cCChHHHHHHHHHH
Q 012126 208 MRAFCFNGDISIAYTLFN----KMFERGVMPDVESYRILMQGLCR-------------KSQVNRAVDLLEDM 262 (470)
Q Consensus 208 i~~~~~~g~~~~a~~~~~----~m~~~~~~p~~~~~~~ll~~~~~-------------~~~~~~a~~~~~~~ 262 (470)
+-.---..-++.|+.+|+ .|....-.-|..=|--.++-+-+ .+++++|++-+.++
T Consensus 856 ~fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 856 CFLVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred eeeccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHHHHHhh
No 455
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.47 E-value=4.3e+02 Score=26.25 Aligned_cols=76 Identities=12% Similarity=0.103 Sum_probs=48.0
Q ss_pred chhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-C------------CCHHHHHHHHHHHHccCCHHHHHHH
Q 012126 332 MPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGF-S------------PHFSVSHALIKGFCNVGKVDEACGV 398 (470)
Q Consensus 332 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~------------~~~~~~~~li~~~~~~g~~~~a~~~ 398 (470)
+.+.|+..+......++.. ..|+...|..+++++...|- . ++......+++++. .|+.+.+..+
T Consensus 191 l~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~~~~l~~ 267 (509)
T PRK14958 191 LKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAGDRLLGC 267 (509)
T ss_pred HHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHH
Confidence 3455777777766666554 35889999999987765431 1 12223333444443 4778888888
Q ss_pred HHHHHHCCCCCC
Q 012126 399 LEELLKAGEAPH 410 (470)
Q Consensus 399 ~~~~~~~~~~p~ 410 (470)
++++.+.|..|.
T Consensus 268 ~~~l~~~g~~~~ 279 (509)
T PRK14958 268 VTRLVEQGVDFS 279 (509)
T ss_pred HHHHHHcCCCHH
Confidence 888888776543
No 456
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=35.27 E-value=1.9e+02 Score=21.53 Aligned_cols=81 Identities=15% Similarity=0.143 Sum_probs=40.4
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 012126 179 RNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDL 258 (470)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 258 (470)
....++|..+.+.+...+.. ...+--+-+..+...|++++| +.. ......||...|..|. -.+.|--+++...
T Consensus 19 ~HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A---Ll~-~~~~~~pdL~p~~AL~--a~klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA---LLL-PQCHCYPDLEPWAALC--AWKLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH---HHH-HTTS--GGGHHHHHHH--HHHCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH---HHh-cccCCCccHHHHHHHH--HHhhccHHHHHHH
Confidence 34467777777777665431 222222334456677777777 111 1223455666654443 3466766777766
Q ss_pred HHHHHhCC
Q 012126 259 LEDMLNKG 266 (470)
Q Consensus 259 ~~~~~~~~ 266 (470)
+.++...|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 66665544
No 457
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.07 E-value=5.1e+02 Score=26.49 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=50.4
Q ss_pred hHHHHHHHh-chhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-C------------CCHHHHHHHHHHHHc
Q 012126 323 IDACKVLED-MPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGF-S------------PHFSVSHALIKGFCN 388 (470)
Q Consensus 323 ~~a~~~~~~-m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~------------~~~~~~~~li~~~~~ 388 (470)
++..+.+.. +.+.|+..+......++. ...|++..++.+++++...|- . .+......+++++.
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~- 262 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA- 262 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH-
Confidence 344444443 345577777777776665 345888999988877664431 1 12233334444444
Q ss_pred cCCHHHHHHHHHHHHHCCCC
Q 012126 389 VGKVDEACGVLEELLKAGEA 408 (470)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~ 408 (470)
.|+...++++++++.+.|..
T Consensus 263 ~~d~~~al~~l~~l~~~G~~ 282 (618)
T PRK14951 263 QGDGRTVVETADELRLNGLS 282 (618)
T ss_pred cCCHHHHHHHHHHHHHcCCC
Confidence 46777888888888777654
No 458
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=34.26 E-value=3.6e+02 Score=24.49 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHccCCHHHHH
Q 012126 376 FSVSHALIKGFCNVGKVDEAC 396 (470)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~ 396 (470)
...|..|+.+++..|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 346777777777777765443
No 459
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=34.09 E-value=3.5e+02 Score=24.37 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=34.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012126 206 IMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLN 264 (470)
Q Consensus 206 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 264 (470)
.++..+.+.+++....+.+..+.. ...-...+......|++..|++++.+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445566666666666666666542 23444566667788888888888877654
No 460
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=33.35 E-value=2e+02 Score=21.23 Aligned_cols=22 Identities=14% Similarity=0.348 Sum_probs=12.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 012126 206 IMMRAFCFNGDISIAYTLFNKM 227 (470)
Q Consensus 206 ~li~~~~~~g~~~~a~~~~~~m 227 (470)
.++.-|...|+.++|..-+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555566666666666554
No 461
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=33.25 E-value=3.3e+02 Score=23.70 Aligned_cols=57 Identities=7% Similarity=-0.007 Sum_probs=28.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHH
Q 012126 206 IMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCR-KSQVNRAVDLLEDM 262 (470)
Q Consensus 206 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~ 262 (470)
.+++.+-..|+++++.+.++++...+...+..=-+.+-.+|-. .|....+.+++..+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 3455555666666666666666666655555555555555432 23333444444433
No 462
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=32.91 E-value=3e+02 Score=23.10 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=12.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 012126 277 LLNSLCRKKKLREAYKLLCRMKV 299 (470)
Q Consensus 277 ll~~~~~~~~~~~a~~~~~~m~~ 299 (470)
++..|.+.-++.++.++++.|.+
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~e 160 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHE 160 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666665544
No 463
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=32.82 E-value=2.9e+02 Score=26.86 Aligned_cols=178 Identities=13% Similarity=0.130 Sum_probs=0.0
Q ss_pred cCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcC-Ch
Q 012126 143 SNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKS----YNIMMRAFCFNG-DI 217 (470)
Q Consensus 143 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g-~~ 217 (470)
..++++|++..++..+.+... +-+.+..|.+++.++.+.|+.||..| ....+.+|+=.| .+
T Consensus 207 ~~~ldeal~~~~~a~~~~~~~--------------SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~ 272 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEGKPI--------------SIGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTV 272 (545)
T ss_pred cCCHHHHHHHHHHHHHcCCce--------------EEEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCH
Q ss_pred hHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh---------
Q 012126 218 SIAYTLFNKMFER---GVMPDVESYRILMQGLCRKSQ--VNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCR--------- 283 (470)
Q Consensus 218 ~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--------- 283 (470)
+++.++..+=.+. -..-+..-....|..+.+.|- +|-.-.+..+..+.|+. +.+.|-..+..|.+
T Consensus 273 ee~~~lr~~dp~~~~~~~~~Sm~rhv~Am~~~~~~Ga~~fDYGN~~r~~a~~aG~~-~aF~~PgfV~~~irplF~~G~GP 351 (545)
T TIGR01228 273 EDADKLRQEEPEAYVKAAKQSMAKHVRAMLAFQKQGSVTFDYGNNIRQVAKEEGVE-DAFDFPGFVPAYIRPLFCRGKGP 351 (545)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHHcCcc-ccCCCCCchhhhcchhhhCcCCC
Q ss_pred ------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------------HHhcCCHhHHHHHHHhchhCC
Q 012126 284 ------KKKLREAYKLLCRMKVKGCNPDIVHYNTVVLG--------------FCREGRAIDACKVLEDMPSNG 336 (470)
Q Consensus 284 ------~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--------------~~~~~~~~~a~~~~~~m~~~~ 336 (470)
.|+.+...+.=+.+.+. ++++...++-+=.+ |...|.-.++-..|++|...|
T Consensus 352 FRWvaLSGdpeDi~~TD~~~~e~-~~~~~~~~~WI~~A~e~~~fqGlpARI~wlg~~eR~~~~l~fNe~V~~G 423 (545)
T TIGR01228 352 FRWVALSGDPADIYRTDAAVKEL-FPEDAHLHRWIDMAQERVSFQGLPARICWLGYGERAKLGLAINEMVRSG 423 (545)
T ss_pred ceeEecCCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHhcCcccCCchhhhhcCccHHHHHHHHHHHHHHcC
No 464
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=32.56 E-value=3.4e+02 Score=23.66 Aligned_cols=106 Identities=17% Similarity=0.201 Sum_probs=75.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhC-C-----------CCCCHHHHHHH
Q 012126 280 SLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSN-G-----------CLPNLVSYRTL 347 (470)
Q Consensus 280 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~-----------~~p~~~~~~~l 347 (470)
-|.+..+.+--.++.+-....+++-+.....+++ +...|++..|+.-++.-... | -.|.......+
T Consensus 168 Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~m 245 (333)
T KOG0991|consen 168 RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKM 245 (333)
T ss_pred hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHH
Confidence 4666677666667777666666666666666655 56789999999888764331 1 14777777888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 012126 348 VGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNV 389 (470)
Q Consensus 348 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 389 (470)
+..|.+ +++++|.+++.++-+.|+.|. ...+.+.+.+-..
T Consensus 246 l~~~~~-~~~~~A~~il~~lw~lgysp~-Dii~~~FRv~K~~ 285 (333)
T KOG0991|consen 246 LQACLK-RNIDEALKILAELWKLGYSPE-DIITTLFRVVKNM 285 (333)
T ss_pred HHHHHh-ccHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHhc
Confidence 887665 789999999999999998876 4556666665443
No 465
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=32.48 E-value=4.6e+02 Score=25.25 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=18.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHH
Q 012126 378 VSHALIKGFCNVGKVDEACGVLEEL 402 (470)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~ 402 (470)
....+|.-|...|+..+..+.++++
T Consensus 347 ~~~~IIqEYFlsgDt~Evi~~L~DL 371 (645)
T KOG0403|consen 347 DLTPIIQEYFLSGDTPEVIRSLRDL 371 (645)
T ss_pred hhHHHHHHHHhcCChHHHHHHHHHc
Confidence 3456788888888888888877755
No 466
>PHA02798 ankyrin-like protein; Provisional
Probab=31.95 E-value=5e+02 Score=25.49 Aligned_cols=13 Identities=31% Similarity=0.473 Sum_probs=6.2
Q ss_pred HHHHHHHCCCCCC
Q 012126 398 VLEELLKAGEAPH 410 (470)
Q Consensus 398 ~~~~~~~~~~~p~ 410 (470)
+++.+++.|..++
T Consensus 273 ~v~~LL~~GAdin 285 (489)
T PHA02798 273 IFEYLLQLGGDIN 285 (489)
T ss_pred HHHHHHHcCCccc
Confidence 3444455554444
No 467
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=31.59 E-value=3.5e+02 Score=23.61 Aligned_cols=80 Identities=11% Similarity=0.039 Sum_probs=32.6
Q ss_pred CCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChhHHHH
Q 012126 144 NLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKS-YNIMMRAFCFNGDISIAYT 222 (470)
Q Consensus 144 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~ 222 (470)
.+++.|+..|.+.+. +.|+..+|..-=..|.-..++++.+..--.+.++. .||..- ...+..+......+++|+.
T Consensus 24 k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHHH
Confidence 345555555544444 33544443322222222233344444333333332 233322 2223334444455555555
Q ss_pred HHHHH
Q 012126 223 LFNKM 227 (470)
Q Consensus 223 ~~~~m 227 (470)
.+.+.
T Consensus 100 ~Lqra 104 (284)
T KOG4642|consen 100 VLQRA 104 (284)
T ss_pred HHHHH
Confidence 55544
No 468
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=31.57 E-value=2.7e+02 Score=23.41 Aligned_cols=64 Identities=9% Similarity=-0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHh
Q 012126 95 NSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLE 158 (470)
Q Consensus 95 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 158 (470)
......+++.|.-.|+++.|.+.|..+....-..-...|..-+..+.+.+......+.++.|..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
No 469
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=31.28 E-value=1.2e+02 Score=22.52 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=17.1
Q ss_pred hcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC
Q 012126 318 REGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQG 355 (470)
Q Consensus 318 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 355 (470)
..+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 12 ~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 12 ESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred hCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 33344445555555554444444444444444444444
No 470
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=31.15 E-value=3.5e+02 Score=23.42 Aligned_cols=29 Identities=17% Similarity=0.029 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHhCCC
Q 012126 133 FTYLIKIYAESNLPDRALKTFRSMLEFNC 161 (470)
Q Consensus 133 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 161 (470)
+..++--....|+++.|+++.+..++.|.
T Consensus 86 l~~~mvW~~D~Gd~~~AL~ia~yAI~~~l 114 (230)
T PHA02537 86 LMTVMVWRFDIGDFDGALEIAEYALEHGL 114 (230)
T ss_pred eeEeeeeeeeccCHHHHHHHHHHHHHcCC
Confidence 44444445678888888888888888764
No 471
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=30.19 E-value=60 Score=26.09 Aligned_cols=18 Identities=11% Similarity=0.036 Sum_probs=12.0
Q ss_pred HHcCCchhHHHHHHHHHh
Q 012126 141 AESNLPDRALKTFRSMLE 158 (470)
Q Consensus 141 ~~~g~~~~A~~~~~~~~~ 158 (470)
.+.++++.|.++...+..
T Consensus 101 L~~~d~~~A~~Ih~~L~t 118 (157)
T PF07304_consen 101 LQARDYDAADEIHVDLMT 118 (157)
T ss_dssp HHHT-HHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHh
Confidence 456777777777777664
No 472
>PRK09462 fur ferric uptake regulator; Provisional
Probab=29.91 E-value=2.8e+02 Score=21.88 Aligned_cols=64 Identities=13% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 012126 327 KVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVG 390 (470)
Q Consensus 327 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 390 (470)
.+-+.+.+.|.+++..-...+-......+..-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 3 ~~~~~l~~~glr~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 3 DNNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred hHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 473
>PRK09857 putative transposase; Provisional
Probab=29.83 E-value=4.2e+02 Score=23.94 Aligned_cols=56 Identities=11% Similarity=0.125 Sum_probs=26.6
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 012126 353 DQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAP 409 (470)
Q Consensus 353 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 409 (470)
..++.++-.++++.+.+. .+......-++..-+...|.-+++.++.++|+..|+..
T Consensus 218 ~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 218 QTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred hccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 344444444444444433 12222222334444444454456666677777666553
No 474
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=29.69 E-value=1.7e+02 Score=21.68 Aligned_cols=35 Identities=9% Similarity=0.088 Sum_probs=14.0
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 012126 215 GDISIAYTLFNKMFERGVMPDVESYRILMQGLCRK 249 (470)
Q Consensus 215 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 249 (470)
+..-.|.++++.+.+.+...+..|.--.+..+...
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~ 48 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEA 48 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC
Confidence 33334444444444444333333333333333333
No 475
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=29.69 E-value=2.8e+02 Score=21.77 Aligned_cols=22 Identities=9% Similarity=0.070 Sum_probs=11.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 012126 279 NSLCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 279 ~~~~~~~~~~~a~~~~~~m~~~ 300 (470)
-++.+.++++.+.++.+.+.+.
T Consensus 79 vg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 79 VGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHhhHHHHHHHHHHHHhh
Confidence 3444555555555555555443
No 476
>PRK05414 urocanate hydratase; Provisional
Probab=29.61 E-value=5.5e+02 Score=25.23 Aligned_cols=67 Identities=16% Similarity=0.098 Sum_probs=40.9
Q ss_pred CCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcC-Chh
Q 012126 144 NLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKS----YNIMMRAFCFNG-DIS 218 (470)
Q Consensus 144 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g-~~~ 218 (470)
.++++|++..++..+.+-.. +-+....+.+++.++.+.|+.||..| ....+.+|+=.| .++
T Consensus 217 ~~Ldeal~~~~~a~~~~~~~--------------SIg~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~t~e 282 (556)
T PRK05414 217 DDLDEALALAEEAKAAGEPL--------------SIGLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGWTLE 282 (556)
T ss_pred CCHHHHHHHHHHHHHcCCce--------------EEEEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCCCCHH
Confidence 46677777777776654221 22335668888888888888887654 222333666666 456
Q ss_pred HHHHHH
Q 012126 219 IAYTLF 224 (470)
Q Consensus 219 ~a~~~~ 224 (470)
++.++.
T Consensus 283 e~~~lr 288 (556)
T PRK05414 283 EAAELR 288 (556)
T ss_pred HHHHHH
Confidence 655544
No 477
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=29.41 E-value=4.6e+02 Score=24.28 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012126 358 DVAKKYMQLMISKGFSPHF----SVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQIC 422 (470)
Q Consensus 358 ~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 422 (470)
++...++.++++. -|+. ..|-.+.......|.++.++.+|++.+..|..|-...-..++..+-
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3455555555543 2332 3455566666666777777777777777776666665555555443
No 478
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=29.28 E-value=4.4e+02 Score=23.92 Aligned_cols=108 Identities=9% Similarity=0.011 Sum_probs=65.2
Q ss_pred HhHHHHHHHhchhCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 012126 322 AIDACKVLEDMPSNGC----LPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACG 397 (470)
Q Consensus 322 ~~~a~~~~~~m~~~~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 397 (470)
.+.|.+.|+.....+. ..+......++....+.|+.+.-..+++.... ..+...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 5678888888777422 34555666667777778876665566555554 3467777889999998999998889
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHcCCcH--HHHHHHH
Q 012126 398 VLEELLKAG-EAPHEDTWVMIVPQICAGEEM--EKLGEVL 434 (470)
Q Consensus 398 ~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~--~~a~~~~ 434 (470)
+++.....+ ++ +.... .++.++...+.. +.+.+.+
T Consensus 223 ~l~~~l~~~~v~-~~d~~-~~~~~~~~~~~~~~~~~~~~~ 260 (324)
T PF11838_consen 223 LLDLLLSNDKVR-SQDIR-YVLAGLASSNPVGRDLAWEFF 260 (324)
T ss_dssp HHHHHHCTSTS--TTTHH-HHHHHHH-CSTTCHHHHHHHH
T ss_pred HHHHHcCCcccc-cHHHH-HHHHHHhcCChhhHHHHHHHH
Confidence 999888754 43 34443 344444423322 5554444
No 479
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.27 E-value=5e+02 Score=26.39 Aligned_cols=86 Identities=14% Similarity=0.207 Sum_probs=51.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 012126 352 CDQGMFDVAKKYMQLMISKGFSPH------FSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGE 425 (470)
Q Consensus 352 ~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 425 (470)
.+..++..+.++|..-... +..| ......+--+|.+..++|.|.+++++..+.+.+ ++.+-..+..+....|
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhc
Confidence 3455666666666554332 1111 234556666777777888888888888774321 3344444556667777
Q ss_pred cHHHHHHHHHHHHH
Q 012126 426 EMEKLGEVLNEIVK 439 (470)
Q Consensus 426 ~~~~a~~~~~~m~~ 439 (470)
.-++|+.++.....
T Consensus 443 ~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 443 KSEEALTCLQKIKS 456 (872)
T ss_pred chHHHHHHHHHHHh
Confidence 77888777766654
No 480
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.14 E-value=1.9e+02 Score=20.05 Aligned_cols=21 Identities=19% Similarity=0.075 Sum_probs=9.6
Q ss_pred HHccCCchHHHHHHHHHhhCC
Q 012126 105 LGRAKYFSLIDDILITLKSEH 125 (470)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~ 125 (470)
+.+..--++|+++++.+.+.|
T Consensus 41 L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 41 LRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHhCcHHHHHHHHHHHHHhC
Confidence 344444444444444444444
No 481
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=29.07 E-value=3.2e+02 Score=22.26 Aligned_cols=37 Identities=14% Similarity=0.064 Sum_probs=17.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 012126 214 NGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKS 250 (470)
Q Consensus 214 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 250 (470)
.++.-.|.++++.+.+.+...+..|.---+..+...|
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3444455555555555544444444333444444443
No 482
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=28.99 E-value=1.7e+02 Score=19.86 Aligned_cols=14 Identities=21% Similarity=0.074 Sum_probs=6.1
Q ss_pred CCHHHHHHHHHHHH
Q 012126 93 HSNSTYLILILKLG 106 (470)
Q Consensus 93 ~~~~~~~~ll~~~~ 106 (470)
-++..|+.+...+.
T Consensus 29 RsPQLYnAI~k~L~ 42 (82)
T PF11123_consen 29 RSPQLYNAIGKLLD 42 (82)
T ss_pred cChHHHHHHHHHHH
Confidence 34444444444333
No 483
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=28.89 E-value=3.8e+02 Score=25.54 Aligned_cols=99 Identities=14% Similarity=0.141 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHh-------chhCCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHH-----
Q 012126 305 DIVHYNTVVLGFCREGRAIDACKVLED-------MPSNGCLP-----NLVSYRTLVGGLCDQGMFDVAKKYMQLM----- 367 (470)
Q Consensus 305 ~~~~~~~li~~~~~~~~~~~a~~~~~~-------m~~~~~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~~----- 367 (470)
+...-..++..+....++.+.++..+. ..+.|..| .-.+...|++..+-.|++..|+++++.+
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Q ss_pred --HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 012126 368 --ISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELL 403 (470)
Q Consensus 368 --~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 403 (470)
...-..-...+|-.+.-+|.-.+++.+|.+.|...+
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.87 E-value=5.7e+02 Score=25.37 Aligned_cols=88 Identities=9% Similarity=-0.067 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHH-----------HHHHHH
Q 012126 74 DPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYL-----------IKIYAE 142 (470)
Q Consensus 74 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----------i~~~~~ 142 (470)
...+..+.+.......++..+......++.... |+...+...++.+...+-+.+......+ +-....
T Consensus 176 s~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~--GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al~ 253 (504)
T PRK14963 176 TEEEIAGKLRRLLEAEGREAEPEALQLVARLAD--GAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAALA 253 (504)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHHH
Q ss_pred cCCchhHHHHHHHHHhCCCcc
Q 012126 143 SNLPDRALKTFRSMLEFNCKP 163 (470)
Q Consensus 143 ~g~~~~A~~~~~~~~~~~~~p 163 (470)
.++++.|+.+++++...|..|
T Consensus 254 ~~d~~~Al~~l~~Ll~~G~~~ 274 (504)
T PRK14963 254 QGDAAEALSGAAQLYRDGFAA 274 (504)
T ss_pred cCCHHHHHHHHHHHHHcCCCH
No 485
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=28.72 E-value=1.1e+02 Score=22.99 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=19.8
Q ss_pred HHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC
Q 012126 312 VVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQG 355 (470)
Q Consensus 312 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 355 (470)
++..+...+..-.|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 33444444445555555555555544444444433444444444
No 486
>PRK14700 recombination factor protein RarA; Provisional
Probab=28.53 E-value=4.5e+02 Score=23.84 Aligned_cols=111 Identities=14% Similarity=0.096 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHH
Q 012126 126 YPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYN 205 (470)
Q Consensus 126 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 205 (470)
+..+..+...++.. ..|+...|+..++.+.......+... =..+.+.+...+-. ....-+...+.
T Consensus 63 ~~i~~~al~~ia~~--a~GDaR~aLN~LE~a~~~~~~~~~~~------------it~~~~~~~~~~~~-~~yDk~gd~HY 127 (300)
T PRK14700 63 FKIDDGLYNAMHNY--NEGDCRKILNLLERMFLISTRGDEIY------------LNKELFDQAVGETS-RDFHREGKEFY 127 (300)
T ss_pred CCcCHHHHHHHHHh--cCCHHHHHHHHHHHHHhhccccCCCc------------cCHHHHHHHHhHHH-hcccCCcchhH
Confidence 44566777766654 36777888887776543100000000 00111222221110 00111222333
Q ss_pred HHHHHHH---hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 012126 206 IMMRAFC---FNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQ 251 (470)
Q Consensus 206 ~li~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 251 (470)
-+++++. +..+.+.|+-++.+|++.|-.|....-..++-++-..|.
T Consensus 128 d~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 128 EQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGN 176 (300)
T ss_pred HHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3344443 456777888888888887777666666666666666553
No 487
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=28.40 E-value=1.6e+02 Score=19.45 Aligned_cols=47 Identities=13% Similarity=0.258 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLC 247 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 247 (470)
+...++-++..+++..-++.++..+.+..+.|.- +..+|.--++.++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~La 53 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLA 53 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 3344555555555555555555555555555432 4444444444433
No 488
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=27.66 E-value=1.7e+02 Score=28.22 Aligned_cols=98 Identities=17% Similarity=0.104 Sum_probs=52.5
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 012126 180 NYLRPAFDLFKSAHKHGVLPNTKSYNIM-MRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDL 258 (470)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 258 (470)
+.++.|..++.+.++.. ||...|-.. ..++.+.+++..|+.=+...++..+. -...|.-=..++.+.+.+.+|...
T Consensus 18 ~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred chHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHHHHHHHH
Confidence 44777777777777654 544444322 36677777777777766666665311 111222222333344445555555
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHH
Q 012126 259 LEDMLNKGFVPDTLSYTTLLNSLC 282 (470)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~ll~~~~ 282 (470)
|+.... +.|+..-...++.-|-
T Consensus 95 l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 95 LEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHhhh--cCcCcHHHHHHHHHHH
Confidence 554433 3566665555555443
No 489
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=27.60 E-value=7.2e+02 Score=25.88 Aligned_cols=30 Identities=10% Similarity=-0.030 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHCCCC
Q 012126 167 QLNRILELLVTHRNYLRPAFDLFKSAHKHGVL 198 (470)
Q Consensus 167 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 198 (470)
....++..+. .++...++.+++++...|..
T Consensus 248 ~If~LldAL~--~~d~~~al~~l~~L~~~G~d 277 (709)
T PRK08691 248 YLYELLTGII--NQDGAALLAKAQEMAACAVG 277 (709)
T ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHHhCCC
Confidence 3444444443 23356666666666665543
No 490
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=27.21 E-value=7.5e+02 Score=25.97 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhCCCC
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQ-----VNRAVDLLEDMLNKGFV 268 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 268 (470)
.......+++.+ +.++++.|+.++.+|.+.|..|....-..++.+....|. ...|...+......|.+
T Consensus 258 hyd~Isa~~ksi-rgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~p 330 (725)
T PRK13341 258 HFDTISAFIKSL-RGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLP 330 (725)
T ss_pred CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCc
Confidence 444555555543 568899999999999998887765555555555544453 22333444444455543
No 491
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.16 E-value=6.1e+02 Score=24.94 Aligned_cols=44 Identities=9% Similarity=-0.031 Sum_probs=29.0
Q ss_pred HHHHHHHhc-hhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012126 324 DACKVLEDM-PSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMIS 369 (470)
Q Consensus 324 ~a~~~~~~m-~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 369 (470)
+..+.++.. ...|+..+......++. ...|+...|+.+++.+..
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~ 228 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIV 228 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHH
Confidence 444445444 33567777777765554 456899999999988664
No 492
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=26.96 E-value=1.7e+02 Score=22.00 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=8.7
Q ss_pred CChhHHHHHHHHHHHCCCCCCHH
Q 012126 215 GDISIAYTLFNKMFERGVMPDVE 237 (470)
Q Consensus 215 g~~~~a~~~~~~m~~~~~~p~~~ 237 (470)
+..-.|.++++.+.+.+...+..
T Consensus 21 ~~~~ta~ei~~~l~~~~~~is~~ 43 (120)
T PF01475_consen 21 PEHLTAEEIYDKLRKKGPRISLA 43 (120)
T ss_dssp SSSEEHHHHHHHHHHTTTT--HH
T ss_pred CCCCCHHHHHHHhhhccCCcCHH
Confidence 33444444444444444333333
No 493
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=26.77 E-value=2.4e+02 Score=20.06 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012126 235 DVESYRILMQGLCRKSQVNRAVDLLEDMLNK 265 (470)
Q Consensus 235 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 265 (470)
|...-..+...+...|++++|++.+-++++.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3344444444555555555555555554443
No 494
>PRK10941 hypothetical protein; Provisional
Probab=25.85 E-value=4.8e+02 Score=23.27 Aligned_cols=59 Identities=10% Similarity=0.027 Sum_probs=34.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 012126 346 TLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKA 405 (470)
Q Consensus 346 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (470)
.+-.+|.+.++++.|+++.+.+.... +.+..-+.--.-.|.+.|.+..|..=++..++.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34455666666667766666666642 223334444444566666666666666666543
No 495
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=25.66 E-value=2.4e+02 Score=24.05 Aligned_cols=81 Identities=17% Similarity=0.227 Sum_probs=42.0
Q ss_pred HhHHHHHHHhchhCCCC-------CCHHHHHHHHHHHHhcC---------ChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 012126 322 AIDACKVLEDMPSNGCL-------PNLVSYRTLVGGLCDQG---------MFDVAKKYMQLMISKGFSP-HFSVSHALIK 384 (470)
Q Consensus 322 ~~~a~~~~~~m~~~~~~-------p~~~~~~~li~~~~~~g---------~~~~a~~~~~~~~~~~~~~-~~~~~~~li~ 384 (470)
.+.|..++.+|--..++ -...-|..+..+|.+.| +.+.-..+++..++.|++. =+.+|.++|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 45555555555433211 13344555666666655 3344455555555555431 1236666666
Q ss_pred HHHccCCHHHHHHHHHHH
Q 012126 385 GFCNVGKVDEACGVLEEL 402 (470)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~ 402 (470)
--.-.-++++..+++..+
T Consensus 217 k~tG~TrpedV~~l~~~~ 234 (236)
T TIGR03581 217 KETGNTRVEDVKQLLAIV 234 (236)
T ss_pred cccCCCCHHHHHHHHHHh
Confidence 554455666666666554
No 496
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=25.38 E-value=2.4e+02 Score=19.64 Aligned_cols=47 Identities=15% Similarity=0.248 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 012126 341 LVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNV 389 (470)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 389 (470)
......++..+.. ++++++...+.++...|+.++ .....+.......
T Consensus 5 ~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~~-~Il~~l~~~l~~~ 51 (89)
T PF08542_consen 5 PEVIEEILESCLN-GDFKEARKKLYELLVEGYSAS-DILKQLHEVLVES 51 (89)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--HH-HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHh
Confidence 3334444444443 466666666666666665443 3444455444444
No 497
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=24.97 E-value=5.6e+02 Score=23.77 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 012126 239 YRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLC 282 (470)
Q Consensus 239 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 282 (470)
|-.++......|.++.++.+|++++..|..|-...-..+++.+.
T Consensus 143 WIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 143 WICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34444555555555666666666666665555544444444433
No 498
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=24.96 E-value=4.5e+02 Score=22.66 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=29.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHH--HHHHHHHHhcCCHhHHHHHHHhch
Q 012126 270 DTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNP---DIVHY--NTVVLGFCREGRAIDACKVLEDMP 333 (470)
Q Consensus 270 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~--~~li~~~~~~~~~~~a~~~~~~m~ 333 (470)
...-++.|+--|.-...+.+|-+.|..-. |+.+ +..++ ..-|....+.|+.++|++....+-
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 44444455444444444444444444322 2222 22222 233455566666666666666554
No 499
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=24.92 E-value=4.7e+02 Score=22.83 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMF 228 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 228 (470)
+..+...+.-++...|+...+.++++.+.
T Consensus 131 ~~Y~lAl~aYAL~la~~~~~~~~~~~~L~ 159 (246)
T PF07678_consen 131 DPYTLALVAYALALAGDSPQASKLLNKLN 159 (246)
T ss_dssp SHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 44444444455555555555555555554
No 500
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=24.88 E-value=1.6e+02 Score=20.36 Aligned_cols=13 Identities=0% Similarity=0.118 Sum_probs=5.4
Q ss_pred HHHHHHHccccCC
Q 012126 433 VLNEIVKVEIKGD 445 (470)
Q Consensus 433 ~~~~m~~~~~~p~ 445 (470)
+++.+.+.|..++
T Consensus 74 ~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 74 IVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHHTTT-TT
T ss_pred HHHHHHHcCCCCC
Confidence 3444444444444
Done!