Query 012126
Match_columns 470
No_of_seqs 622 out of 2661
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 03:17:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 6.7E-32 2.3E-36 269.4 39.8 367 64-441 89-546 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.4E-31 1.2E-35 264.3 41.8 372 63-446 121-583 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.4E-32 4.6E-37 264.2 25.0 207 183-389 7-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 2.1E-32 7.1E-37 262.9 24.4 207 218-424 7-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 3.2E-27 1.1E-31 222.7 42.5 367 65-446 5-372 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 3.9E-26 1.3E-30 215.2 41.2 351 63-425 37-387 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 4E-23 1.4E-27 198.5 36.8 297 62-369 29-357 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 9.8E-23 3.4E-27 195.8 36.8 343 92-446 23-414 (450)
9 2gw1_A Mitochondrial precursor 99.9 9.3E-23 3.2E-27 199.3 36.9 373 64-448 11-484 (514)
10 3fp2_A TPR repeat-containing p 99.9 3.2E-21 1.1E-25 189.6 38.0 369 63-441 29-492 (537)
11 3ieg_A DNAJ homolog subfamily 99.9 1.1E-19 3.6E-24 168.8 36.5 327 95-454 3-347 (359)
12 2gw1_A Mitochondrial precursor 99.9 7.4E-21 2.5E-25 185.8 29.0 342 95-447 6-449 (514)
13 3ieg_A DNAJ homolog subfamily 99.9 2.7E-19 9.1E-24 166.0 37.1 325 63-422 7-351 (359)
14 3hym_B Cell division cycle pro 99.9 7.1E-19 2.4E-23 161.3 29.1 292 128-428 20-322 (330)
15 2xm6_A Protein corresponding t 99.8 4.7E-16 1.6E-20 150.9 49.3 351 62-443 42-435 (490)
16 3fp2_A TPR repeat-containing p 99.8 1.2E-18 4E-23 171.3 31.1 342 95-447 25-462 (537)
17 3hym_B Cell division cycle pro 99.8 3.4E-18 1.2E-22 156.7 29.3 289 96-392 23-321 (330)
18 1fch_A Peroxisomal targeting s 99.8 6.4E-18 2.2E-22 157.5 24.7 256 178-438 76-357 (368)
19 1fch_A Peroxisomal targeting s 99.8 6.4E-18 2.2E-22 157.5 23.4 288 109-402 39-356 (368)
20 2xm6_A Protein corresponding t 99.8 1.5E-14 5E-19 140.3 46.8 321 94-441 38-397 (490)
21 4eqf_A PEX5-related protein; a 99.8 2.9E-17 1E-21 153.0 25.2 274 61-366 67-352 (365)
22 3spa_A Mtrpol, DNA-directed RN 99.8 5.6E-19 1.9E-23 174.8 13.4 151 200-355 126-286 (1134)
23 3cv0_A Peroxisome targeting si 99.8 5.3E-17 1.8E-21 148.5 25.4 275 61-365 23-310 (327)
24 3spa_A Mtrpol, DNA-directed RN 99.8 5.6E-19 1.9E-23 174.8 11.9 115 271-385 127-245 (1134)
25 3cv0_A Peroxisome targeting si 99.8 8.3E-17 2.9E-21 147.2 25.7 235 200-439 54-314 (327)
26 4eqf_A PEX5-related protein; a 99.8 3.6E-17 1.2E-21 152.4 23.5 234 200-436 98-352 (365)
27 2ooe_A Cleavage stimulation fa 99.8 3.6E-15 1.2E-19 146.1 38.3 362 70-440 23-454 (530)
28 2ooe_A Cleavage stimulation fa 99.8 1.5E-14 5.2E-19 141.6 41.0 370 64-441 51-493 (530)
29 3mkr_A Coatomer subunit epsilo 99.7 3.3E-16 1.1E-20 140.5 23.7 249 139-404 8-263 (291)
30 4g1t_A Interferon-induced prot 99.7 5.8E-15 2E-19 142.4 33.8 361 63-441 55-460 (472)
31 1b89_A Protein (clathrin heavy 99.7 3.8E-17 1.3E-21 150.1 16.0 220 132-388 34-253 (449)
32 3mkr_A Coatomer subunit epsilo 99.7 2E-15 6.7E-20 135.5 27.0 251 103-370 7-264 (291)
33 1b89_A Protein (clathrin heavy 99.7 1.3E-16 4.3E-21 146.6 15.5 289 64-398 8-304 (449)
34 1xi4_A Clathrin heavy chain; a 99.7 1.3E-13 4.4E-18 141.2 38.5 317 64-438 990-1307(1630)
35 4g1t_A Interferon-induced prot 99.7 1.6E-14 5.5E-19 139.3 29.7 305 95-404 51-400 (472)
36 3uq3_A Heat shock protein STI1 99.7 9.4E-15 3.2E-19 128.6 24.4 227 201-441 5-237 (258)
37 1ouv_A Conserved hypothetical 99.7 2.8E-13 9.6E-18 120.5 32.0 225 200-442 5-253 (273)
38 2pl2_A Hypothetical conserved 99.7 2E-14 6.7E-19 123.1 21.9 195 237-437 6-211 (217)
39 2pl2_A Hypothetical conserved 99.7 2.3E-14 8E-19 122.7 22.0 200 198-403 2-212 (217)
40 3u4t_A TPR repeat-containing p 99.7 3.4E-14 1.2E-18 126.2 23.8 248 202-455 4-263 (272)
41 3uq3_A Heat shock protein STI1 99.6 1.1E-13 3.8E-18 121.7 24.6 213 179-405 18-236 (258)
42 2ho1_A Type 4 fimbrial biogene 99.6 2.3E-13 8E-18 119.3 26.5 201 201-405 37-238 (252)
43 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.4E-14 4.9E-19 128.8 18.7 246 179-434 18-269 (275)
44 1xi4_A Clathrin heavy chain; a 99.6 2.7E-12 9.3E-17 131.7 36.8 316 63-432 1053-1376(1630)
45 2ho1_A Type 4 fimbrial biogene 99.6 2.9E-13 9.9E-18 118.7 26.2 206 236-447 37-243 (252)
46 1ouv_A Conserved hypothetical 99.6 1.5E-12 5.3E-17 115.6 31.0 178 214-406 55-252 (273)
47 2vq2_A PILW, putative fimbrial 99.6 4.9E-13 1.7E-17 114.8 25.9 202 200-404 7-210 (225)
48 3e4b_A ALGK; tetratricopeptide 99.6 5.5E-13 1.9E-17 127.4 27.9 349 63-441 7-388 (452)
49 2vq2_A PILW, putative fimbrial 99.6 7.5E-13 2.6E-17 113.7 26.2 209 235-448 7-217 (225)
50 2q7f_A YRRB protein; TPR, prot 99.6 4.6E-14 1.6E-18 123.0 18.6 201 200-405 22-222 (243)
51 2h6f_A Protein farnesyltransfe 99.6 4.3E-13 1.5E-17 124.4 25.7 230 130-367 97-344 (382)
52 2q7f_A YRRB protein; TPR, prot 99.6 1.2E-13 4.2E-18 120.2 20.8 201 235-440 22-222 (243)
53 2h6f_A Protein farnesyltransfe 99.6 5.6E-13 1.9E-17 123.6 25.4 248 95-352 97-364 (382)
54 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.2E-13 4.1E-18 122.8 18.5 209 181-399 58-269 (275)
55 3u4t_A TPR repeat-containing p 99.6 6.8E-13 2.3E-17 117.8 23.3 200 203-405 39-250 (272)
56 4a1s_A PINS, partner of inscut 99.5 3.9E-13 1.3E-17 127.1 18.0 276 132-440 50-372 (411)
57 2ond_A Cleavage stimulation fa 99.5 4E-11 1.4E-15 108.5 30.2 217 218-440 33-270 (308)
58 4a1s_A PINS, partner of inscut 99.5 5.4E-13 1.9E-17 126.1 18.6 273 97-405 50-372 (411)
59 3sf4_A G-protein-signaling mod 99.5 8E-13 2.7E-17 124.5 19.7 63 94-157 8-74 (406)
60 3e4b_A ALGK; tetratricopeptide 99.5 1.1E-12 3.7E-17 125.4 20.4 317 100-442 8-353 (452)
61 3ulq_A Response regulator aspa 99.5 3.6E-12 1.2E-16 119.3 23.3 231 207-440 109-368 (383)
62 3sf4_A G-protein-signaling mod 99.5 1.1E-12 3.9E-17 123.4 19.2 275 128-404 7-335 (406)
63 3ro2_A PINS homolog, G-protein 99.5 1.3E-12 4.5E-17 119.4 17.4 239 202-440 44-332 (338)
64 3ro2_A PINS homolog, G-protein 99.5 1.6E-12 5.6E-17 118.8 17.6 276 98-405 8-332 (338)
65 2ond_A Cleavage stimulation fa 99.5 5.9E-11 2E-15 107.4 26.8 219 183-406 33-271 (308)
66 4abn_A Tetratricopeptide repea 99.5 3.6E-12 1.2E-16 122.6 19.3 212 182-399 84-315 (474)
67 3vtx_A MAMA; tetratricopeptide 99.5 2.7E-11 9.1E-16 100.5 22.2 162 273-438 7-168 (184)
68 3ulq_A Response regulator aspa 99.5 9.7E-12 3.3E-16 116.4 21.8 297 105-404 22-367 (383)
69 3vtx_A MAMA; tetratricopeptide 99.4 2E-11 6.9E-16 101.3 20.7 166 129-299 4-169 (184)
70 3nf1_A KLC 1, kinesin light ch 99.4 1.1E-12 3.7E-17 118.8 13.9 240 200-440 26-307 (311)
71 4abn_A Tetratricopeptide repea 99.4 8.7E-12 3E-16 119.9 20.6 217 111-334 84-320 (474)
72 3q15_A PSP28, response regulat 99.4 6.2E-11 2.1E-15 110.7 24.9 231 206-440 106-365 (378)
73 3nf1_A KLC 1, kinesin light ch 99.4 2.9E-12 9.8E-17 116.0 12.1 246 95-369 27-306 (311)
74 4e6h_A MRNA 3'-END-processing 99.4 1.2E-08 4.1E-13 101.0 37.8 375 63-442 70-572 (679)
75 1hz4_A MALT regulatory protein 99.4 3.2E-10 1.1E-14 105.5 25.5 302 132-441 16-350 (373)
76 3q15_A PSP28, response regulat 99.3 3.8E-10 1.3E-14 105.3 25.2 233 169-404 104-364 (378)
77 4e6h_A MRNA 3'-END-processing 99.3 7.3E-09 2.5E-13 102.6 34.5 360 76-442 49-535 (679)
78 3as5_A MAMA; tetratricopeptide 99.3 1.3E-10 4.4E-15 96.1 18.6 164 273-440 10-173 (186)
79 1hz4_A MALT regulatory protein 99.3 1.5E-09 5E-14 101.0 27.7 301 98-406 17-350 (373)
80 3as5_A MAMA; tetratricopeptide 99.3 3.5E-10 1.2E-14 93.5 20.4 163 238-404 10-172 (186)
81 4gyw_A UDP-N-acetylglucosamine 99.3 1.5E-10 5.2E-15 115.8 18.7 164 94-297 8-171 (723)
82 4i17_A Hypothetical protein; T 99.2 2.6E-09 8.8E-14 91.8 23.1 205 199-417 5-220 (228)
83 4gyw_A UDP-N-acetylglucosamine 99.2 5.6E-10 1.9E-14 111.8 21.0 153 178-334 21-173 (723)
84 3edt_B KLC 2, kinesin light ch 99.2 1.1E-10 3.7E-15 103.8 13.7 228 212-440 12-281 (283)
85 4i17_A Hypothetical protein; T 99.2 2.8E-09 9.7E-14 91.6 21.3 199 235-447 6-214 (228)
86 3edt_B KLC 2, kinesin light ch 99.2 3.8E-10 1.3E-14 100.2 14.9 233 72-334 14-280 (283)
87 3mv2_B Coatomer subunit epsilo 99.1 8.9E-09 3.1E-13 90.7 19.9 180 220-406 85-283 (310)
88 3mv2_B Coatomer subunit epsilo 99.1 6.5E-08 2.2E-12 85.3 24.7 179 185-370 85-282 (310)
89 2fo7_A Synthetic consensus TPR 99.1 9E-09 3.1E-13 79.7 17.6 130 308-440 3-132 (136)
90 1qqe_A Vesicular transport pro 99.1 7.4E-09 2.5E-13 92.7 18.8 205 182-403 33-267 (292)
91 2fo7_A Synthetic consensus TPR 99.1 1.3E-08 4.6E-13 78.8 17.3 128 204-334 4-131 (136)
92 3dra_A Protein farnesyltransfe 99.1 3.5E-07 1.2E-11 81.4 28.0 217 112-369 50-286 (306)
93 1qqe_A Vesicular transport pro 99.0 1.8E-08 6.1E-13 90.2 19.4 166 202-369 78-268 (292)
94 3rjv_A Putative SEL1 repeat pr 99.0 5E-08 1.7E-12 82.6 20.6 175 220-406 5-198 (212)
95 3qky_A Outer membrane assembly 99.0 1.7E-08 5.7E-13 88.7 18.3 63 95-158 15-80 (261)
96 3qky_A Outer membrane assembly 99.0 2.6E-08 8.8E-13 87.5 19.1 185 200-405 14-224 (261)
97 3urz_A Uncharacterized protein 99.0 2.8E-08 9.6E-13 84.0 18.5 24 207-230 10-33 (208)
98 3rjv_A Putative SEL1 repeat pr 99.0 6.2E-08 2.1E-12 82.1 20.3 178 183-372 3-199 (212)
99 3dra_A Protein farnesyltransfe 99.0 2.2E-07 7.4E-12 82.7 24.0 226 67-299 41-286 (306)
100 3urz_A Uncharacterized protein 99.0 4.1E-08 1.4E-12 83.0 18.5 192 131-349 5-198 (208)
101 2r5s_A Uncharacterized protein 99.0 1E-08 3.5E-13 84.1 13.9 161 98-263 9-171 (176)
102 3qou_A Protein YBBN; thioredox 99.0 4.5E-08 1.5E-12 87.3 18.7 167 93-263 115-282 (287)
103 2uy1_A Cleavage stimulation fa 98.9 1.6E-06 5.6E-11 83.2 29.9 347 72-439 27-412 (493)
104 2pzi_A Probable serine/threoni 98.9 1.1E-08 3.9E-13 102.7 15.3 174 106-286 402-583 (681)
105 2pzi_A Probable serine/threoni 98.9 1.4E-08 4.9E-13 101.9 15.5 188 141-334 402-604 (681)
106 2r5s_A Uncharacterized protein 98.9 2.9E-08 9.9E-13 81.4 13.7 164 60-229 7-172 (176)
107 2yhc_A BAMD, UPF0169 lipoprote 98.9 3E-07 1E-11 78.7 20.3 203 200-441 3-214 (225)
108 4ga2_A E3 SUMO-protein ligase 98.9 1.1E-08 3.8E-13 81.4 10.4 83 205-289 35-117 (150)
109 2yhc_A BAMD, UPF0169 lipoprote 98.9 2.1E-07 7.2E-12 79.6 19.1 191 178-406 16-214 (225)
110 3qou_A Protein YBBN; thioredox 98.9 9.2E-08 3.2E-12 85.2 17.4 164 271-438 117-282 (287)
111 4ga2_A E3 SUMO-protein ligase 98.9 1.1E-08 3.9E-13 81.3 9.6 143 209-355 5-148 (150)
112 3u3w_A Transcriptional activat 98.8 5.2E-07 1.8E-11 80.6 20.7 164 277-440 81-266 (293)
113 2vsy_A XCC0866; transferase, g 98.8 1E-07 3.4E-12 94.0 17.2 154 72-231 2-158 (568)
114 2vsy_A XCC0866; transferase, g 98.8 1.2E-07 4.1E-12 93.4 17.7 149 182-334 5-156 (568)
115 2ifu_A Gamma-SNAP; membrane fu 98.8 4.8E-08 1.6E-12 88.1 13.4 223 180-433 5-254 (307)
116 3q7a_A Farnesyltransferase alp 98.8 7.1E-06 2.4E-10 73.8 27.0 223 106-369 65-330 (349)
117 3u3w_A Transcriptional activat 98.8 2E-06 6.7E-11 76.8 22.4 125 208-332 82-222 (293)
118 2ifu_A Gamma-SNAP; membrane fu 98.7 2.1E-07 7.2E-12 83.8 15.5 121 202-327 117-253 (307)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.7 6.1E-07 2.1E-11 75.8 17.5 128 273-406 8-151 (213)
120 3q7a_A Farnesyltransferase alp 98.7 9.4E-06 3.2E-10 73.0 25.3 222 178-404 66-330 (349)
121 2qfc_A PLCR protein; TPR, HTH, 98.7 2.5E-06 8.6E-11 76.1 21.0 163 277-439 81-265 (293)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.5E-06 5.3E-11 73.3 18.5 127 204-335 9-150 (213)
123 2qfc_A PLCR protein; TPR, HTH, 98.7 5.3E-06 1.8E-10 74.0 22.1 167 238-404 77-265 (293)
124 1a17_A Serine/threonine protei 98.6 1.7E-06 5.7E-11 69.6 16.1 128 202-332 14-143 (166)
125 2uy1_A Cleavage stimulation fa 98.6 7.2E-05 2.5E-09 71.7 29.9 317 109-437 28-380 (493)
126 1a17_A Serine/threonine protei 98.6 1.8E-06 6E-11 69.5 16.1 130 307-439 14-145 (166)
127 4f3v_A ESX-1 secretion system 98.6 3.5E-06 1.2E-10 73.2 18.4 196 213-416 18-246 (282)
128 4gco_A Protein STI-1; structur 98.6 2.3E-06 7.8E-11 65.5 15.0 97 202-300 14-110 (126)
129 1na0_A Designed protein CTPR3; 98.6 3.4E-06 1.2E-10 63.9 16.0 98 201-300 9-106 (125)
130 3gw4_A Uncharacterized protein 98.6 7.8E-07 2.7E-11 74.4 12.9 84 213-297 4-92 (203)
131 3gw4_A Uncharacterized protein 98.6 5.6E-07 1.9E-11 75.3 11.8 97 343-439 68-175 (203)
132 2c2l_A CHIP, carboxy terminus 98.6 4.3E-07 1.5E-11 80.6 11.5 99 200-300 3-101 (281)
133 2vyi_A SGTA protein; chaperone 98.6 3.2E-06 1.1E-10 64.6 15.0 118 201-321 12-129 (131)
134 2e2e_A Formate-dependent nitri 98.5 1.2E-06 4.1E-11 71.6 13.0 118 180-300 24-144 (177)
135 4gco_A Protein STI-1; structur 98.5 2.4E-06 8.2E-11 65.4 13.8 95 179-276 26-120 (126)
136 3gyz_A Chaperone protein IPGC; 98.5 8.7E-07 3E-11 70.1 11.6 96 343-440 38-133 (151)
137 4f3v_A ESX-1 secretion system 98.5 3.1E-06 1.1E-10 73.6 15.7 189 71-265 18-237 (282)
138 2lni_A Stress-induced-phosphop 98.5 2.8E-06 9.6E-11 65.3 14.2 117 200-319 15-131 (133)
139 1na0_A Designed protein CTPR3; 98.5 4.1E-06 1.4E-10 63.4 14.9 97 307-405 10-106 (125)
140 3gyz_A Chaperone protein IPGC; 98.5 1.6E-06 5.5E-11 68.6 12.7 98 201-300 36-133 (151)
141 2e2e_A Formate-dependent nitri 98.5 8E-07 2.7E-11 72.7 11.1 121 212-335 21-144 (177)
142 2c2l_A CHIP, carboxy terminus 98.5 4.8E-06 1.7E-10 73.7 16.9 194 235-440 3-199 (281)
143 1p5q_A FKBP52, FK506-binding p 98.5 2.9E-06 9.9E-11 77.3 15.3 145 270-437 146-291 (336)
144 2vyi_A SGTA protein; chaperone 98.5 3.4E-06 1.2E-10 64.5 13.5 118 306-426 12-129 (131)
145 2lni_A Stress-induced-phosphop 98.5 3.1E-06 1.1E-10 65.1 13.2 98 306-405 16-113 (133)
146 2vgx_A Chaperone SYCD; alterna 98.5 9.9E-07 3.4E-11 69.7 10.3 99 200-300 20-118 (148)
147 3q49_B STIP1 homology and U bo 98.5 2.6E-06 8.8E-11 66.1 12.2 99 340-440 8-106 (137)
148 1p5q_A FKBP52, FK506-binding p 98.4 4.7E-06 1.6E-10 75.9 15.5 124 200-325 146-283 (336)
149 2vgx_A Chaperone SYCD; alterna 98.4 2.2E-06 7.4E-11 67.8 11.4 96 307-404 22-117 (148)
150 3dss_A Geranylgeranyl transfer 98.4 0.00019 6.5E-09 64.2 24.6 137 178-318 42-191 (331)
151 3sz7_A HSC70 cochaperone (SGT) 98.4 4.4E-06 1.5E-10 67.2 12.9 99 305-405 10-108 (164)
152 3upv_A Heat shock protein STI1 98.4 1.3E-05 4.3E-10 61.2 14.7 97 202-300 5-101 (126)
153 3dss_A Geranylgeranyl transfer 98.4 0.00033 1.1E-08 62.6 25.5 127 182-312 90-233 (331)
154 2xcb_A PCRH, regulatory protei 98.4 2.5E-06 8.5E-11 66.9 10.3 94 344-439 21-114 (142)
155 2fbn_A 70 kDa peptidylprolyl i 98.4 1E-06 3.4E-11 73.6 8.4 97 203-300 40-151 (198)
156 2kck_A TPR repeat; tetratricop 98.4 7.7E-06 2.6E-10 60.5 12.2 99 341-441 6-107 (112)
157 1elw_A TPR1-domain of HOP; HOP 98.3 2.8E-05 9.4E-10 58.0 15.3 97 202-300 5-101 (118)
158 4gcn_A Protein STI-1; structur 98.3 1.2E-05 4.2E-10 61.4 13.4 97 202-299 9-111 (127)
159 3upv_A Heat shock protein STI1 98.3 1.1E-05 3.7E-10 61.5 13.1 94 344-439 7-100 (126)
160 4b4t_Q 26S proteasome regulato 98.3 4.1E-05 1.4E-09 72.3 19.7 196 209-404 12-244 (434)
161 2xcb_A PCRH, regulatory protei 98.3 9.8E-06 3.3E-10 63.4 12.7 98 201-300 18-115 (142)
162 4gcn_A Protein STI-1; structur 98.3 5.7E-06 2E-10 63.3 11.0 61 308-369 10-70 (127)
163 1elw_A TPR1-domain of HOP; HOP 98.3 3.3E-05 1.1E-09 57.5 15.1 96 308-405 6-101 (118)
164 4b4t_Q 26S proteasome regulato 98.3 3.6E-05 1.2E-09 72.7 18.2 234 132-366 57-320 (434)
165 1elr_A TPR2A-domain of HOP; HO 98.3 1.1E-05 3.7E-10 61.6 12.0 98 202-300 5-108 (131)
166 2fbn_A 70 kDa peptidylprolyl i 98.3 1.6E-05 5.6E-10 66.1 14.0 130 308-439 40-185 (198)
167 3q49_B STIP1 homology and U bo 98.3 2.7E-05 9.1E-10 60.2 14.1 98 200-299 8-105 (137)
168 3sz7_A HSC70 cochaperone (SGT) 98.3 2.7E-05 9.2E-10 62.5 14.3 99 200-300 10-108 (164)
169 2dba_A Smooth muscle cell asso 98.3 4.7E-05 1.6E-09 59.5 15.5 98 305-405 27-128 (148)
170 1hxi_A PEX5, peroxisome target 98.2 1.5E-05 5.2E-10 60.3 11.5 94 344-439 20-113 (121)
171 1elr_A TPR2A-domain of HOP; HO 98.2 1.6E-05 5.3E-10 60.7 11.5 97 237-334 5-107 (131)
172 3rkv_A Putative peptidylprolyl 98.2 9.8E-06 3.3E-10 65.0 10.5 62 377-439 64-125 (162)
173 2dba_A Smooth muscle cell asso 98.2 4.2E-05 1.4E-09 59.8 14.0 94 62-159 31-128 (148)
174 1hxi_A PEX5, peroxisome target 98.2 1.7E-05 5.8E-10 60.0 10.9 92 206-299 22-113 (121)
175 2kck_A TPR repeat; tetratricop 98.2 2.7E-05 9.2E-10 57.5 11.8 97 307-405 7-106 (112)
176 2xev_A YBGF; tetratricopeptide 98.2 1.9E-05 6.5E-10 60.3 10.9 89 349-439 10-104 (129)
177 3ro3_A PINS homolog, G-protein 98.2 8.7E-06 3E-10 64.8 9.1 132 309-440 12-158 (164)
178 1wao_1 Serine/threonine protei 98.1 4E-05 1.4E-09 73.3 14.9 118 210-330 15-134 (477)
179 3ro3_A PINS homolog, G-protein 98.1 2.7E-05 9.3E-10 61.8 10.7 26 378-403 131-156 (164)
180 2xev_A YBGF; tetratricopeptide 98.1 0.00017 5.8E-09 54.8 14.5 92 207-300 8-105 (129)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 7.6E-05 2.6E-09 71.0 14.7 124 201-326 268-405 (457)
182 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 6.2E-05 2.1E-09 71.6 13.6 88 342-431 318-405 (457)
183 3k9i_A BH0479 protein; putativ 98.0 4.7E-06 1.6E-10 62.7 4.5 86 319-405 3-90 (117)
184 3rkv_A Putative peptidylprolyl 98.0 0.00015 5.3E-09 57.8 13.3 99 201-300 11-126 (162)
185 3k9i_A BH0479 protein; putativ 97.9 1.5E-05 5E-10 59.9 6.3 87 71-158 2-89 (117)
186 2hr2_A Hypothetical protein; a 97.9 8.6E-05 3E-09 58.2 10.6 95 346-440 16-131 (159)
187 1ihg_A Cyclophilin 40; ppiase 97.9 0.00015 5E-09 66.8 13.8 122 202-325 224-360 (370)
188 1wao_1 Serine/threonine protei 97.9 5.1E-05 1.7E-09 72.6 10.5 115 178-295 18-134 (477)
189 2if4_A ATFKBP42; FKBP-like, al 97.9 4E-05 1.4E-09 69.7 8.8 148 271-440 179-328 (338)
190 1ihg_A Cyclophilin 40; ppiase 97.9 0.00015 5E-09 66.8 12.7 90 341-432 273-362 (370)
191 1klx_A Cysteine rich protein B 97.8 0.00083 2.9E-08 51.9 14.7 89 207-301 31-127 (138)
192 1klx_A Cysteine rich protein B 97.8 0.0011 3.8E-08 51.2 14.9 110 145-266 10-127 (138)
193 1dce_A Protein (RAB geranylger 97.8 0.0012 4.1E-08 64.4 18.2 176 178-358 41-243 (567)
194 1dce_A Protein (RAB geranylger 97.8 0.004 1.4E-07 60.7 21.7 174 213-391 40-241 (567)
195 2hr2_A Hypothetical protein; a 97.8 0.00051 1.7E-08 53.8 12.1 95 203-298 13-129 (159)
196 3n71_A Histone lysine methyltr 97.7 9.5E-05 3.3E-09 70.4 8.9 126 315-440 318-464 (490)
197 3n71_A Histone lysine methyltr 97.7 0.00017 5.8E-09 68.7 10.4 125 281-405 319-464 (490)
198 2l6j_A TPR repeat-containing p 97.7 6.8E-05 2.3E-09 55.3 6.1 63 237-300 5-67 (111)
199 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00017 5.7E-09 65.6 9.5 148 201-370 179-328 (338)
200 2kat_A Uncharacterized protein 97.6 0.00077 2.6E-08 50.0 10.9 79 184-264 3-81 (115)
201 2l6j_A TPR repeat-containing p 97.6 6.2E-05 2.1E-09 55.5 4.5 65 340-405 3-67 (111)
202 1na3_A Designed protein CTPR2; 97.5 0.0012 4.1E-08 46.3 10.4 63 202-265 10-72 (91)
203 2kat_A Uncharacterized protein 97.5 0.00096 3.3E-08 49.5 10.1 79 219-299 3-81 (115)
204 1na3_A Designed protein CTPR2; 97.4 0.0017 5.7E-08 45.5 10.3 78 342-421 10-87 (91)
205 1zu2_A Mitochondrial import re 97.4 0.00057 1.9E-08 53.5 7.6 46 254-300 64-120 (158)
206 1zu2_A Mitochondrial import re 97.3 0.00034 1.2E-08 54.7 5.7 99 71-174 14-133 (158)
207 3ma5_A Tetratricopeptide repea 97.3 0.0016 5.4E-08 46.9 8.6 64 340-404 6-69 (100)
208 3ma5_A Tetratricopeptide repea 97.1 0.0031 1.1E-07 45.3 8.8 64 200-264 6-69 (100)
209 3mkq_A Coatomer beta'-subunit; 96.8 0.044 1.5E-06 56.1 17.9 153 211-402 609-762 (814)
210 3qww_A SET and MYND domain-con 96.8 0.003 1E-07 59.1 8.3 87 353-439 310-410 (433)
211 3ly7_A Transcriptional activat 96.8 0.018 6E-07 51.9 12.5 71 340-414 276-346 (372)
212 3qwp_A SET and MYND domain-con 96.7 0.0059 2E-07 57.1 9.5 91 349-439 295-399 (429)
213 2kc7_A BFR218_protein; tetratr 96.7 0.0054 1.9E-07 43.7 7.3 59 347-406 6-65 (99)
214 3u64_A Protein TP_0956; tetrat 96.7 0.11 3.6E-06 44.9 15.7 84 323-408 180-272 (301)
215 3ly7_A Transcriptional activat 96.6 0.026 8.8E-07 50.8 11.9 64 200-265 276-339 (372)
216 3qwp_A SET and MYND domain-con 96.5 0.017 5.7E-07 54.1 11.0 92 313-404 294-399 (429)
217 3qww_A SET and MYND domain-con 96.5 0.0046 1.6E-07 57.8 7.2 87 318-404 310-410 (433)
218 2kc7_A BFR218_protein; tetratr 96.5 0.015 5.2E-07 41.3 8.4 53 246-299 10-63 (99)
219 3bee_A Putative YFRE protein; 96.4 0.03 1E-06 39.5 9.0 65 340-405 5-72 (93)
220 3mkq_A Coatomer beta'-subunit; 96.4 0.097 3.3E-06 53.5 16.7 128 244-404 607-735 (814)
221 3mkq_B Coatomer subunit alpha; 96.3 0.16 5.3E-06 40.3 13.7 129 279-437 13-141 (177)
222 1wy6_A Hypothetical protein ST 96.3 0.22 7.4E-06 37.2 13.9 65 342-407 92-156 (172)
223 1wy6_A Hypothetical protein ST 96.2 0.24 8.2E-06 36.9 14.9 67 305-372 90-156 (172)
224 1pc2_A Mitochondria fission pr 96.2 0.015 5.1E-07 44.9 7.1 81 322-404 14-99 (152)
225 3bee_A Putative YFRE protein; 96.0 0.093 3.2E-06 36.9 10.0 65 200-265 5-72 (93)
226 2v5f_A Prolyl 4-hydroxylase su 95.9 0.032 1.1E-06 40.3 7.6 66 340-405 4-75 (104)
227 2v5f_A Prolyl 4-hydroxylase su 95.9 0.097 3.3E-06 37.6 10.1 66 200-265 4-75 (104)
228 3u64_A Protein TP_0956; tetrat 95.7 0.053 1.8E-06 46.8 9.0 92 357-450 179-281 (301)
229 1pc2_A Mitochondria fission pr 95.5 0.093 3.2E-06 40.5 8.9 79 358-438 15-98 (152)
230 3mkq_B Coatomer subunit alpha; 95.3 0.83 2.8E-05 36.2 17.3 101 211-332 15-115 (177)
231 4h7y_A Dual specificity protei 95.2 0.3 1E-05 37.3 10.5 102 305-408 12-126 (161)
232 1nzn_A CGI-135 protein, fissio 94.9 0.12 4.2E-06 38.3 7.7 82 357-439 17-102 (126)
233 4h7y_A Dual specificity protei 93.9 0.73 2.5E-05 35.2 10.0 103 200-304 12-127 (161)
234 1nzn_A CGI-135 protein, fissio 93.3 0.46 1.6E-05 35.2 8.0 80 220-300 20-103 (126)
235 4ady_A RPN2, 26S proteasome re 93.2 8.6 0.00029 39.3 24.2 256 105-369 384-657 (963)
236 4gns_B Protein CSD3, chitin bi 93.1 0.36 1.2E-05 48.1 9.3 52 385-437 346-397 (754)
237 4gns_B Protein CSD3, chitin bi 91.5 0.92 3.2E-05 45.2 10.1 128 133-263 251-398 (754)
238 2ff4_A Probable regulatory pro 91.4 3.8 0.00013 37.5 13.6 67 347-414 177-248 (388)
239 1v54_E Cytochrome C oxidase po 91.3 2.1 7.3E-05 29.9 8.6 47 287-333 26-72 (109)
240 2ff4_A Probable regulatory pro 90.8 2.4 8.3E-05 38.8 11.7 95 72-167 128-247 (388)
241 4fhn_B Nucleoporin NUP120; pro 90.5 5.8 0.0002 42.2 15.7 147 277-430 818-990 (1139)
242 3o48_A Mitochondria fission 1 90.3 2.6 9E-05 31.4 9.1 46 359-404 61-106 (134)
243 4b4t_P 26S proteasome regulato 89.8 13 0.00044 34.7 18.1 189 215-404 30-246 (445)
244 1y8m_A FIS1; mitochondria, unk 89.5 5.5 0.00019 30.1 11.3 67 338-404 36-105 (144)
245 4fhn_B Nucleoporin NUP120; pro 88.9 24 0.00084 37.5 18.9 168 98-288 815-988 (1139)
246 4ady_A RPN2, 26S proteasome re 88.8 23 0.00078 36.3 21.9 271 70-351 385-671 (963)
247 2y69_E Cytochrome C oxidase su 88.8 3.7 0.00013 30.5 8.6 47 288-334 70-116 (152)
248 3txn_A 26S proteasome regulato 87.6 16 0.00056 33.2 23.4 241 132-377 21-290 (394)
249 3lpz_A GET4 (YOR164C homolog); 87.0 16 0.00054 32.3 18.9 19 421-439 197-215 (336)
250 3o48_A Mitochondria fission 1 86.0 7.3 0.00025 29.0 9.0 65 374-438 38-105 (134)
251 1v54_E Cytochrome C oxidase po 85.6 7.4 0.00025 27.3 10.0 47 184-230 28-74 (109)
252 3lpz_A GET4 (YOR164C homolog); 84.8 20 0.0007 31.6 17.7 167 132-333 37-214 (336)
253 3lvg_A Clathrin heavy chain 1; 84.6 0.0023 7.8E-08 59.0 -12.3 198 64-284 59-276 (624)
254 1zbp_A Hypothetical protein VP 84.5 15 0.0005 31.3 11.4 55 245-300 6-60 (273)
255 1y8m_A FIS1; mitochondria, unk 83.1 13 0.00044 28.1 11.5 66 374-439 37-105 (144)
256 2wpv_A GET4, UPF0363 protein Y 83.0 23 0.0008 30.9 17.1 66 374-440 132-217 (312)
257 2y69_E Cytochrome C oxidase su 82.6 13 0.00044 27.7 10.0 58 185-243 72-129 (152)
258 3esl_A Checkpoint serine/threo 81.4 13 0.00044 30.0 9.5 58 354-411 92-150 (202)
259 3lvg_A Clathrin heavy chain 1; 81.0 0.01 3.5E-07 54.8 -9.5 212 201-436 54-316 (624)
260 4b4t_R RPN7, 26S proteasome re 80.6 21 0.00073 33.0 12.3 99 202-300 132-237 (429)
261 3ffl_A Anaphase-promoting comp 80.4 9.6 0.00033 29.6 8.1 24 344-367 66-89 (167)
262 3esl_A Checkpoint serine/threo 79.3 23 0.00079 28.5 10.4 57 319-375 92-149 (202)
263 3ffl_A Anaphase-promoting comp 79.0 12 0.0004 29.2 8.2 94 344-437 23-148 (167)
264 2wpv_A GET4, UPF0363 protein Y 78.6 33 0.0011 30.0 19.2 25 200-224 133-157 (312)
265 4b4t_R RPN7, 26S proteasome re 75.6 16 0.00056 33.7 9.9 97 273-369 133-236 (429)
266 4a1g_A Mitotic checkpoint seri 73.2 29 0.00098 26.5 9.1 50 395-444 84-134 (152)
267 3eiq_C Programmed cell death p 72.9 26 0.00088 31.4 10.0 77 344-421 220-298 (358)
268 2qx5_A Nucleoporin NIC96; mRNA 72.8 75 0.0026 31.2 16.2 221 207-446 300-570 (661)
269 2uwj_G Type III export protein 70.6 22 0.00074 24.9 6.8 46 386-437 49-94 (115)
270 3eiq_C Programmed cell death p 68.9 26 0.00088 31.4 9.1 80 378-458 219-300 (358)
271 1zbp_A Hypothetical protein VP 68.0 56 0.0019 27.8 14.2 118 103-230 5-129 (273)
272 2wvi_A Mitotic checkpoint seri 67.2 42 0.0014 26.0 9.0 55 358-412 77-132 (164)
273 1k1a_A B-cell lymphoma 3-encod 67.1 35 0.0012 27.9 9.5 23 210-232 15-37 (241)
274 4b4t_P 26S proteasome regulato 65.3 87 0.003 29.0 25.5 191 73-264 30-246 (445)
275 3eu9_A Huntingtin-interacting 64.3 8.4 0.00029 31.8 5.0 11 209-219 47-57 (240)
276 2uwj_G Type III export protein 63.9 34 0.0012 23.9 7.9 79 180-266 20-98 (115)
277 1wdy_A 2-5A-dependent ribonucl 62.0 17 0.00058 30.8 6.7 122 313-446 152-281 (285)
278 4g8k_A 2-5A-dependent ribonucl 57.5 27 0.00093 30.7 7.4 16 104-119 31-46 (337)
279 1k1a_A B-cell lymphoma 3-encod 56.8 52 0.0018 26.8 8.7 185 242-445 12-210 (241)
280 2p58_C Putative type III secre 54.8 52 0.0018 23.0 9.0 78 286-371 22-99 (116)
281 1bpo_A Protein (clathrin); cla 54.5 1.2E+02 0.0043 28.0 10.8 91 64-159 334-424 (494)
282 2wvi_A Mitotic checkpoint seri 53.4 76 0.0026 24.6 9.9 52 324-375 78-130 (164)
283 2ijq_A Hypothetical protein; s 52.9 63 0.0021 24.9 7.5 60 379-439 36-103 (161)
284 4a1g_A Mitotic checkpoint seri 52.2 76 0.0026 24.2 10.0 53 147-199 82-134 (152)
285 4aez_C MAD3, mitotic spindle c 51.0 51 0.0017 27.1 7.0 53 182-234 130-183 (223)
286 3txn_A 26S proteasome regulato 50.1 1.5E+02 0.0051 26.9 22.9 291 97-406 21-344 (394)
287 2p58_C Putative type III secre 50.1 63 0.0022 22.6 10.3 80 179-266 20-99 (116)
288 1wdy_A 2-5A-dependent ribonucl 50.1 17 0.00059 30.8 4.6 48 317-364 190-239 (285)
289 4aez_C MAD3, mitotic spindle c 48.8 34 0.0012 28.1 5.7 53 358-410 131-184 (223)
290 3ltm_A Alpha-REP4; protein eng 47.6 1E+02 0.0036 24.4 19.1 17 200-216 32-48 (211)
291 3bu8_A Telomeric repeat-bindin 47.3 64 0.0022 26.2 6.8 67 111-180 88-162 (235)
292 2d2s_A Exocyst complex compone 46.9 95 0.0033 25.7 8.4 90 312-404 24-119 (235)
293 2d2s_A Exocyst complex compone 46.7 1.2E+02 0.0042 25.0 9.1 87 208-297 25-117 (235)
294 2nsz_A Programmed cell death p 46.6 84 0.0029 23.1 7.2 22 241-262 12-33 (129)
295 3t8k_A Uncharacterized protein 46.4 72 0.0025 25.1 7.5 18 358-375 91-108 (186)
296 3jxi_A Vanilloid receptor-rela 46.3 16 0.00055 30.7 3.7 26 210-235 11-36 (260)
297 1qsa_A Protein (soluble lytic 45.4 2.2E+02 0.0077 27.6 33.8 178 250-434 228-436 (618)
298 3hra_A Ankyrin repeat family p 44.7 54 0.0019 25.8 6.7 13 212-224 13-25 (201)
299 2zu6_B Programmed cell death p 44.5 29 0.00098 30.3 5.0 25 204-228 6-30 (307)
300 3kae_A CDC27, possible protein 43.6 1.1E+02 0.0039 23.9 7.4 55 245-299 71-142 (242)
301 3eu9_A Huntingtin-interacting 43.6 42 0.0014 27.3 5.9 6 283-288 186-191 (240)
302 2keb_A DNA polymerase subunit 43.4 65 0.0022 22.3 5.4 31 360-390 28-58 (101)
303 4b4t_S RPN3, 26S proteasome re 42.3 2.3E+02 0.0078 26.8 12.0 66 130-195 231-299 (523)
304 3t8k_A Uncharacterized protein 42.0 1.1E+02 0.0039 23.9 8.0 63 243-305 42-108 (186)
305 2ion_A PDCD4, programmed cell 41.8 1.1E+02 0.0038 23.3 7.4 64 204-268 12-77 (152)
306 4gq2_M Nucleoporin NUP120; bet 41.0 2.1E+02 0.0072 29.6 11.6 51 312-367 816-866 (950)
307 2zu6_B Programmed cell death p 40.4 1.8E+02 0.0063 25.2 10.2 60 167-229 5-66 (307)
308 2ijq_A Hypothetical protein; s 39.5 1.3E+02 0.0044 23.2 8.4 52 213-264 44-103 (161)
309 2ion_A PDCD4, programmed cell 37.6 76 0.0026 24.2 5.9 63 239-302 12-76 (152)
310 2r9g_A AAA ATPase, central reg 37.4 1.6E+02 0.0055 23.6 9.9 18 249-266 27-44 (204)
311 2nsz_A Programmed cell death p 36.8 1.2E+02 0.0042 22.2 8.8 66 204-270 10-77 (129)
312 3kea_A K1L; tropism, ANK repea 36.5 50 0.0017 28.2 5.4 204 206-437 33-244 (285)
313 3jxi_A Vanilloid receptor-rela 36.2 51 0.0017 27.4 5.4 21 105-125 12-32 (260)
314 1qsa_A Protein (soluble lytic 35.0 3.2E+02 0.011 26.5 31.9 311 69-400 82-437 (618)
315 3hra_A Ankyrin repeat family p 35.0 72 0.0025 25.0 5.9 81 245-331 11-94 (201)
316 2xig_A Ferric uptake regulatio 34.7 1.5E+02 0.005 22.4 7.4 12 288-299 43-54 (150)
317 4gq2_M Nucleoporin NUP120; bet 34.6 2.8E+02 0.0095 28.7 11.3 131 277-425 816-950 (950)
318 1mzb_A Ferric uptake regulatio 33.4 1.3E+02 0.0044 22.2 6.6 57 333-390 10-67 (136)
319 3pvs_A Replication-associated 33.0 3E+02 0.01 25.4 12.9 38 284-321 268-305 (447)
320 1ug3_A EIF4GI, eukaryotic prot 32.3 2.2E+02 0.0075 25.1 8.9 22 100-121 16-37 (339)
321 3bge_A Predicted ATPase; struc 31.9 2E+02 0.0067 23.0 9.1 32 249-280 20-51 (201)
322 4ets_A Ferric uptake regulatio 31.9 1.1E+02 0.0038 23.5 6.1 68 77-145 15-84 (162)
323 4fke_A Aminopeptidase N; zinc 31.8 4.4E+02 0.015 27.1 17.6 90 205-299 690-786 (909)
324 3bqo_A Telomeric repeat-bindin 31.7 26 0.0009 27.9 2.4 48 111-158 94-145 (211)
325 2w57_A Ferric uptake regulatio 30.6 1.3E+02 0.0046 22.6 6.4 60 332-392 8-68 (150)
326 2fe3_A Peroxide operon regulat 29.7 1.8E+02 0.006 21.8 7.8 38 213-250 33-70 (145)
327 2xig_A Ferric uptake regulatio 29.6 1.8E+02 0.0062 21.9 8.4 45 206-250 31-75 (150)
328 3pvs_A Replication-associated 29.0 3.5E+02 0.012 25.0 13.1 124 232-372 190-326 (447)
329 1mzb_A Ferric uptake regulatio 28.2 1.8E+02 0.0061 21.4 7.0 35 216-250 33-67 (136)
330 2b7e_A PRE-mRNA processing pro 28.2 39 0.0013 20.9 2.2 28 289-316 4-31 (59)
331 3eyy_A Putative iron uptake re 27.7 1.9E+02 0.0065 21.6 7.5 15 146-160 33-47 (145)
332 3eyy_A Putative iron uptake re 27.6 1.7E+02 0.0057 21.9 6.4 34 217-250 33-66 (145)
333 1bpo_A Protein (clathrin); cla 27.5 3.8E+02 0.013 24.9 10.9 141 108-262 342-482 (494)
334 2w57_A Ferric uptake regulatio 26.3 2E+02 0.007 21.6 6.7 35 216-250 32-66 (150)
335 3l6a_A Eukaryotic translation 26.1 3.5E+02 0.012 24.1 12.0 26 97-122 14-39 (364)
336 3ctd_A Putative ATPase, AAA fa 25.9 2.6E+02 0.009 22.6 9.9 32 249-280 48-79 (213)
337 2f6m_A Suppressor protein STP2 25.8 1.1E+02 0.0038 19.3 4.0 46 378-424 4-49 (65)
338 3kea_A K1L; tropism, ANK repea 25.3 1.2E+02 0.0042 25.6 6.0 192 188-402 46-244 (285)
339 2fe3_A Peroxide operon regulat 24.9 2.2E+02 0.0074 21.2 9.0 54 121-175 13-66 (145)
340 2rfa_A Transient receptor pote 24.8 2.2E+02 0.0075 22.7 7.3 19 388-406 163-181 (232)
341 3f3f_C Nucleoporin NUP85; stru 24.4 3E+02 0.01 26.3 8.4 73 251-325 496-568 (570)
342 2o03_A Probable zinc uptake re 23.2 1.3E+02 0.0045 21.9 5.0 40 316-355 20-59 (131)
343 2pnn_A Transient receptor pote 23.1 1.1E+02 0.0039 25.4 5.3 22 210-231 19-40 (273)
344 3d5l_A Regulatory protein RECX 23.1 3.1E+02 0.01 22.3 10.1 169 223-402 35-206 (221)
345 4ets_A Ferric uptake regulatio 23.0 1.9E+02 0.0065 22.2 6.0 45 206-250 37-83 (162)
346 3t5v_B Nuclear mRNA export pro 22.7 2.1E+02 0.007 26.6 7.1 62 132-193 178-247 (455)
347 3b7b_A Euchromatic histone-lys 22.7 83 0.0028 25.5 4.2 51 385-439 183-235 (237)
348 3bu8_A Telomeric repeat-bindin 22.5 3.2E+02 0.011 22.3 11.7 21 279-299 122-142 (235)
349 2o03_A Probable zinc uptake re 22.3 1.6E+02 0.0056 21.4 5.3 24 215-238 24-47 (131)
350 3mwm_A ZUR, putative metal upt 22.1 1.5E+02 0.0052 21.9 5.2 39 210-248 22-60 (139)
351 3mwm_A ZUR, putative metal upt 21.8 1.6E+02 0.0054 21.9 5.2 42 103-144 21-62 (139)
352 4fke_A Aminopeptidase N; zinc 20.8 6.9E+02 0.024 25.6 17.5 91 240-335 690-787 (909)
353 1ug3_A EIF4GI, eukaryotic prot 20.5 1.1E+02 0.0039 26.9 4.8 25 274-298 14-38 (339)
354 2fu4_A Ferric uptake regulatio 20.1 1.9E+02 0.0064 18.7 7.5 30 219-248 35-64 (83)
355 3qil_A Clathrin heavy chain 1; 20.1 1.4E+02 0.0046 21.8 4.0 46 67-116 40-85 (125)
356 3ygs_P Procaspase 9; apoptosis 20.0 2.2E+02 0.0075 19.5 5.6 13 287-299 53-65 (97)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.7e-32 Score=269.44 Aligned_cols=367 Identities=10% Similarity=-0.012 Sum_probs=275.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 012126 64 RVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAES 143 (470)
Q Consensus 64 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 143 (470)
.+...+...|+++.|+.+|+.+... .|+..++..++..|.+.|++++|..+++.+... ++++.+++.++.+|.+.
T Consensus 89 ~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 163 (597)
T 2xpi_A 89 LWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKL 163 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHH
Confidence 4456667889999999999988743 357788888888899999999999988887543 56778888888888888
Q ss_pred CCchhHHHHHHHHHhC---------------CCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCC-----------
Q 012126 144 NLPDRALKTFRSMLEF---------------NCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGV----------- 197 (470)
Q Consensus 144 g~~~~A~~~~~~~~~~---------------~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~----------- 197 (470)
|++++|+++|+++... +..++..+++.+...+. ..|++++|.++|+++.+.+.
T Consensus 164 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 242 (597)
T 2xpi_A 164 YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYT-NLSNFDRAKECYKEALMVDAKCYEAFDQLVS 242 (597)
T ss_dssp TCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCchhhHHHHHHHH
Confidence 8888888888743221 12234566666666665 44557888888777765432
Q ss_pred -----------------------------------------------------------CCCHHHHHHHHHHHHhcCChh
Q 012126 198 -----------------------------------------------------------LPNTKSYNIMMRAFCFNGDIS 218 (470)
Q Consensus 198 -----------------------------------------------------------~~~~~~~~~li~~~~~~g~~~ 218 (470)
.++..+|+.++.+|.+.|+++
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 322 (597)
T 2xpi_A 243 NHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFI 322 (597)
T ss_dssp TTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHH
T ss_pred hhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHH
Confidence 156777788888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012126 219 IAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMK 298 (470)
Q Consensus 219 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 298 (470)
+|.++|+++.+.+.. +..++..++.++.+.|++++|.++++++.+... .+..+++.++.+|.+.|++++|.++|+++.
T Consensus 323 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 400 (597)
T 2xpi_A 323 DVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKISEARRYFSKSS 400 (597)
T ss_dssp HHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 888888888776543 666777777777777777777777777765433 367778888888888888888888888887
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 012126 299 VKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSV 378 (470)
Q Consensus 299 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 378 (470)
+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+
T Consensus 401 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 477 (597)
T 2xpi_A 401 TMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLL 477 (597)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 652 3356788888888888888888888888877653 3467778888888888888888888888887753 346777
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHcc
Q 012126 379 SHALIKGFCNVGKVDEACGVLEELLKA----GEAPH--EDTWVMIVPQICAGEEMEKLGEVLNEIVKVE 441 (470)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 441 (470)
|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 888888888888888888888887665 55666 6788888888888888888888888887654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-31 Score=264.34 Aligned_cols=372 Identities=10% Similarity=0.016 Sum_probs=320.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhC---------------CCC
Q 012126 63 CRVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSE---------------HYP 127 (470)
Q Consensus 63 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------~~~ 127 (470)
..+...+...|+++.|+.+|+.+... +++..++..++..+.+.|++++|.++|+++... +.+
T Consensus 121 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (597)
T 2xpi_A 121 FWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIK 197 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccc
Confidence 44567778899999999999988643 468899999999999999999999999853222 223
Q ss_pred CCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCC----------------------------------------------
Q 012126 128 VTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNC---------------------------------------------- 161 (470)
Q Consensus 128 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------------------------------------------- 161 (470)
.+..+|+.++.+|.+.|++++|+++|+++.+.+.
T Consensus 198 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 277 (597)
T 2xpi_A 198 LEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYML 277 (597)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHH
Confidence 4578999999999999999999999999876431
Q ss_pred ------------------------ccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 012126 162 ------------------------KPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDI 217 (470)
Q Consensus 162 ------------------------~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 217 (470)
.++..+++.+...+. ..|++++|..+|+++.+.+.. +..+++.++.+|.+.|++
T Consensus 278 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 278 KLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF-VRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEK 355 (597)
T ss_dssp TSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCH
T ss_pred HHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCH
Confidence 145555666666555 556799999999999987643 788899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 012126 218 SIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRM 297 (470)
Q Consensus 218 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 297 (470)
++|.++++++.+.. +.+..+++.++.+|.+.|++++|.++|+++.+.... +..+|+.++.+|.+.|++++|.++|+++
T Consensus 356 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 356 NKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp HHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998764 347899999999999999999999999999886543 7889999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC
Q 012126 298 KVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISK----GFS 373 (470)
Q Consensus 298 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~ 373 (470)
.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..
T Consensus 434 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 511 (597)
T 2xpi_A 434 ARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511 (597)
T ss_dssp HHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence 8874 4478899999999999999999999999998864 347899999999999999999999999999876 667
Q ss_pred CC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHccccCCc
Q 012126 374 PH--FSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVEIKGDT 446 (470)
Q Consensus 374 ~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 446 (470)
|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|++++|.+.++++++. .|+.
T Consensus 512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~ 583 (597)
T 2xpi_A 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNE 583 (597)
T ss_dssp SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCC
Confidence 77 7899999999999999999999999998865 348899999999999999999999999999964 4554
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.4e-32 Score=264.20 Aligned_cols=207 Identities=20% Similarity=0.265 Sum_probs=173.8
Q ss_pred hhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---------h
Q 012126 183 RPAFDLFKSAHKHGVLPNT-KSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQ---------V 252 (470)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~ 252 (470)
..+..+.+++.+.+....+ ..++.+|++|++.|++++|.++|++|.+.|+.||..||++||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4456666677766655443 45788899999999999999999999999999999999999999987654 6
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhc
Q 012126 253 NRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDM 332 (470)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 332 (470)
++|.++|++|...|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 012126 333 PSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNV 389 (470)
Q Consensus 333 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 389 (470)
.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999888754
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.1e-32 Score=262.89 Aligned_cols=207 Identities=18% Similarity=0.195 Sum_probs=182.8
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC---------H
Q 012126 218 SIAYTLFNKMFERGVMPDV-ESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKK---------L 287 (470)
Q Consensus 218 ~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~ 287 (470)
..+..+.+++.+++..... ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3456667777777765544 46888999999999999999999999999999999999999999987654 7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 012126 288 REAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLM 367 (470)
Q Consensus 288 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 367 (470)
+.|.++|++|...|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 012126 368 ISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAG 424 (470)
Q Consensus 368 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 424 (470)
.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999998763
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3.2e-27 Score=222.65 Aligned_cols=367 Identities=13% Similarity=0.046 Sum_probs=316.3
Q ss_pred HHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 012126 65 VQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESN 144 (470)
Q Consensus 65 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 144 (470)
+...+...|+++.|++.++.+.+.. +.+...+..+...+.+.|++++|...++...+.. |.+..+|..+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 4566778999999999999887654 4567778888888999999999999999988775 778999999999999999
Q ss_pred CchhHHHHHHHHHhCCCccCHH-HHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 012126 145 LPDRALKTFRSMLEFNCKPLPK-QLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTL 223 (470)
Q Consensus 145 ~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 223 (470)
++++|++.|+++... .|+.. .+..+...+. ..|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.
T Consensus 82 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 82 QLQEAIEHYRHALRL--KPDFIDGYINLAAALV-AAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH-HHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--CcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHH
Confidence 999999999999874 46544 4555554444 667799999999999987643 566788888999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 012126 224 FNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCN 303 (470)
Q Consensus 224 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 303 (470)
|+++.+.... +..+|..+...+...|++++|+..|+++.+.++. +...+..+...+...|++++|...+++..+.. +
T Consensus 158 ~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p 234 (388)
T 1w3b_A 158 YLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-P 234 (388)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-T
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 9999987543 6889999999999999999999999999987654 67789999999999999999999999998763 3
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012126 304 PDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALI 383 (470)
Q Consensus 304 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 383 (470)
.+..++..+...|.+.|++++|...|+++.+.+ +.+..+|..+..++.+.|++++|...++++.+.. +.+..+++.+.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 312 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 357889999999999999999999999998863 2357789999999999999999999999999863 56788999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHccccCCc
Q 012126 384 KGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVEIKGDT 446 (470)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 446 (470)
..+...|++++|.+.++++++.. +.+..++..+..+|.+.|++++|.+.++++++ ..|+.
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~ 372 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTF 372 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCC
Confidence 99999999999999999998853 34678999999999999999999999999995 45654
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=3.9e-26 Score=215.20 Aligned_cols=351 Identities=13% Similarity=0.016 Sum_probs=307.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 012126 63 CRVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAE 142 (470)
Q Consensus 63 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 142 (470)
..+..++...++++.|..+++.+.... +.+...|..+...+.+.|++++|...++++.... |.+...+..+..++..
T Consensus 37 ~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 113 (388)
T 1w3b_A 37 LLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVA 113 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 455677888999999999999887654 5688999999999999999999999999998875 6678889999999999
Q ss_pred cCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 012126 143 SNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYT 222 (470)
Q Consensus 143 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 222 (470)
.|++++|++.|+++.+. .|+.......+..++...|++++|.+.|+++.+.... +..+|+.+...+...|++++|..
T Consensus 114 ~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 190 (388)
T 1w3b_A 114 AGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIH 190 (388)
T ss_dssp HSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999884 5777777777777887889999999999999987543 68899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012126 223 LFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGC 302 (470)
Q Consensus 223 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 302 (470)
.|+++.+.+.. +...|..+...+...|++++|+..+++....... +..++..+..+|.+.|++++|...|+++.+.+
T Consensus 191 ~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 267 (388)
T 1w3b_A 191 HFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ- 267 (388)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred HHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 99999987644 6788999999999999999999999999887544 67889999999999999999999999999873
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012126 303 NPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHAL 382 (470)
Q Consensus 303 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 382 (470)
+.+..+|..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+
T Consensus 268 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 345 (388)
T 1w3b_A 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNL 345 (388)
T ss_dssp SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 3357789999999999999999999999998863 4578899999999999999999999999998863 4567899999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 012126 383 IKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGE 425 (470)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 425 (470)
...|.+.|++++|.+.|+++++... .+...|..+...+...|
T Consensus 346 ~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 346 ASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHhHHHHHHHcc
Confidence 9999999999999999999988542 25667777777766655
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=4e-23 Score=198.48 Aligned_cols=297 Identities=10% Similarity=0.050 Sum_probs=181.1
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 012126 62 PCRVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYA 141 (470)
Q Consensus 62 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 141 (470)
...++..+...|+++.|+.+|+.+.... +.+...+..+...+...|++++|...++.+.+.+ |.+..++..+..+|.
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 3455566777888888888888876543 3567788888888888888888888888887765 556778888888888
Q ss_pred HcCCchhHHHHHHHHHhCCCccCHH----HHHHHHH-----------HHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHH
Q 012126 142 ESNLPDRALKTFRSMLEFNCKPLPK----QLNRILE-----------LLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNI 206 (470)
Q Consensus 142 ~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~ll~-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 206 (470)
..|++++|++.|+++.+. .|+.. .+..+.. ..+...|++++|...|+++.+... .+...+..
T Consensus 106 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 182 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELREL 182 (450)
T ss_dssp HTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHH
Confidence 888888888888888773 35443 2222211 112244456666666666665432 25556666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHH---------
Q 012126 207 MMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTL--------- 277 (470)
Q Consensus 207 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------- 277 (470)
+..+|...|++++|.++|+++.+... .+..++..+..+|...|++++|+..|+++.+.... +...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHH
Confidence 66666666666666666666655432 24556666666666666666666666666544322 23333332
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHH
Q 012126 278 ---LNSLCRKKKLREAYKLLCRMKVKGCNPD-----IVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVG 349 (470)
Q Consensus 278 ---l~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 349 (470)
...+.+.|++++|...|+++.+. .|+ ...|..+...+.+.|++++|+..++++.+.. +.+...|..+..
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 337 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 45555556666666666655553 222 2345555555556666666666665555431 224455555555
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 012126 350 GLCDQGMFDVAKKYMQLMIS 369 (470)
Q Consensus 350 ~~~~~g~~~~a~~~~~~~~~ 369 (470)
+|...|++++|...++++.+
T Consensus 338 ~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 56666666666666665555
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=9.8e-23 Score=195.79 Aligned_cols=343 Identities=12% Similarity=0.040 Sum_probs=276.6
Q ss_pred CCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHH
Q 012126 92 RHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRI 171 (470)
Q Consensus 92 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 171 (470)
+.+...+..+...+.+.|++++|..+|+.+.... |.+..++..+..+|...|++++|+..|+++.+.+ |+.......
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 99 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQ 99 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHH
Confidence 4567789999999999999999999999998764 6689999999999999999999999999998853 544444444
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHCCCCCCH---HHHHHH------------HHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 012126 172 LELLVTHRNYLRPAFDLFKSAHKHGVLPNT---KSYNIM------------MRAFCFNGDISIAYTLFNKMFERGVMPDV 236 (470)
Q Consensus 172 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 236 (470)
+..++...|++++|...|+++.+.... +. ..+..+ ...+...|++++|..+|+++.+.... +.
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 177 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DA 177 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Ch
Confidence 455555777899999999999986532 33 555555 44488999999999999999987543 78
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----
Q 012126 237 ESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTV---- 312 (470)
Q Consensus 237 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---- 312 (470)
.++..+..+|...|++++|++.|+++.+.... +..++..+..+|...|++++|...|+++.+.. +.+...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 89999999999999999999999999876543 78899999999999999999999999998763 2234445444
Q ss_pred --------HHHHHhcCCHhHHHHHHHhchhCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 012126 313 --------VLGFCREGRAIDACKVLEDMPSNGCLPN-----LVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVS 379 (470)
Q Consensus 313 --------i~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 379 (470)
...+.+.|++++|...|+++.+. .|+ ...|..+...+.+.|++++|...++++.+.. +.+..+|
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~ 332 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHH
Confidence 78899999999999999999884 354 4478888999999999999999999998863 4468899
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH------------HHcCC-----cHHHHHHHHHHHHHccc
Q 012126 380 HALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQ------------ICAGE-----EMEKLGEVLNEIVKVEI 442 (470)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~m~~~~~ 442 (470)
..+..+|...|++++|...|+++++... -+...+..+..+ |...| +.+++.+.++++.. ..
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l-~~ 410 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEHNE-NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLAL-QW 410 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHH-HS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHH-Hh
Confidence 9999999999999999999999988542 245666666632 33344 56777888886322 23
Q ss_pred cCCc
Q 012126 443 KGDT 446 (470)
Q Consensus 443 ~p~~ 446 (470)
.||.
T Consensus 411 ~pd~ 414 (450)
T 2y4t_A 411 HPDN 414 (450)
T ss_dssp CGGG
T ss_pred CCCC
Confidence 4554
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=9.3e-23 Score=199.33 Aligned_cols=373 Identities=12% Similarity=-0.027 Sum_probs=309.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 012126 64 RVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAES 143 (470)
Q Consensus 64 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 143 (470)
..+..+...|+++.|+..|+.+.... |+...|..+...+.+.|++++|...++.+.+.+ |.+..++..+..+|...
T Consensus 11 ~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 11 DKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHH
Confidence 45677888999999999999998764 588999999999999999999999999998876 67888999999999999
Q ss_pred CCchhHHHHHHHHHhCCCc-------------------------------------------------------------
Q 012126 144 NLPDRALKTFRSMLEFNCK------------------------------------------------------------- 162 (470)
Q Consensus 144 g~~~~A~~~~~~~~~~~~~------------------------------------------------------------- 162 (470)
|++++|+..|+++...+..
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 9999999999998765420
Q ss_pred ----------------cCHHHHHHHHHHHHh---cCCChhhHHHHHHHHHH-----CCCC--------CCHHHHHHHHHH
Q 012126 163 ----------------PLPKQLNRILELLVT---HRNYLRPAFDLFKSAHK-----HGVL--------PNTKSYNIMMRA 210 (470)
Q Consensus 163 ----------------p~~~~~~~ll~~~~~---~~~~~~~a~~~~~~~~~-----~~~~--------~~~~~~~~li~~ 210 (470)
|+............. ..|++++|...|+++.+ .... .+...+..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 111111111222122 26789999999999988 4111 235678888999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 012126 211 FCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREA 290 (470)
Q Consensus 211 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 290 (470)
+...|++++|..+|+++.+.+.. ..++..+..++...|++++|+..++++.+.... +..++..+..++...|++++|
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999987654 888999999999999999999999999987544 677889999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 012126 291 YKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISK 370 (470)
Q Consensus 291 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 370 (470)
...+++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 324 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 324 GKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999998874 3357788899999999999999999999988753 335678888999999999999999999998874
Q ss_pred CC-CCC----HHHHHHHHHHHHc---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHccc
Q 012126 371 GF-SPH----FSVSHALIKGFCN---VGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVEI 442 (470)
Q Consensus 371 ~~-~~~----~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 442 (470)
.. .++ ...+..+...+.. .|++++|...++++++.. +.+..++..+..+|.+.|++++|.+.++++++..
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~- 479 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA- 479 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc-
Confidence 21 111 3488899999999 999999999999998864 3367889999999999999999999999999654
Q ss_pred cCCcee
Q 012126 443 KGDTRI 448 (470)
Q Consensus 443 ~p~~~~ 448 (470)
|+...
T Consensus 480 -~~~~~ 484 (514)
T 2gw1_A 480 -RTMEE 484 (514)
T ss_dssp -SSHHH
T ss_pred -cccHH
Confidence 55433
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=3.2e-21 Score=189.58 Aligned_cols=369 Identities=10% Similarity=0.037 Sum_probs=294.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 012126 63 CRVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAE 142 (470)
Q Consensus 63 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 142 (470)
..++..+...|+++.|+..|+.+.... +.+...+..+...+.+.|++++|.+.++.+.+.+ |.+..++..+..++..
T Consensus 29 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH
Confidence 445677888999999999999998765 4678999999999999999999999999998876 6788999999999999
Q ss_pred cCCchhHHHHHHHHHhCCC------------------------------------ccCHHH-------------------
Q 012126 143 SNLPDRALKTFRSMLEFNC------------------------------------KPLPKQ------------------- 167 (470)
Q Consensus 143 ~g~~~~A~~~~~~~~~~~~------------------------------------~p~~~~------------------- 167 (470)
.|++++|+..|+.+..... .|+...
T Consensus 106 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 106 LGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp HTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred cCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 9999999999964321100 011111
Q ss_pred ----------HHHHHHHHHhc--------CCChhhHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHhcCChhHHHH
Q 012126 168 ----------LNRILELLVTH--------RNYLRPAFDLFKSAHKHGVLPN-------TKSYNIMMRAFCFNGDISIAYT 222 (470)
Q Consensus 168 ----------~~~ll~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~ 222 (470)
+...+..+... .+++++|..+++++.+.... + ..++..+...+...|++++|..
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 11122222111 13578899999999876533 3 2356777788899999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012126 223 LFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGC 302 (470)
Q Consensus 223 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 302 (470)
.|++..+.. |+..++..+...+...|++++|++.++++.+.... +..++..+..++...|++++|...+++..+..
T Consensus 265 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 340 (537)
T 3fp2_A 265 LLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN- 340 (537)
T ss_dssp HHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-
Confidence 999999874 45788889999999999999999999999887644 67889999999999999999999999998864
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHH
Q 012126 303 NPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKG-----FSPHFS 377 (470)
Q Consensus 303 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~ 377 (470)
+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. ......
T Consensus 341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 3356788899999999999999999999998863 3456788889999999999999999999987642 111223
Q ss_pred HHHHHHHHHHcc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcc
Q 012126 378 VSHALIKGFCNV----------GKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVE 441 (470)
Q Consensus 378 ~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 441 (470)
.+......+... |++++|...|++.++... .+...|..+..+|.+.|++++|.+.++++++..
T Consensus 420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 344555667777 999999999999988643 367889999999999999999999999999754
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=1.1e-19 Score=168.75 Aligned_cols=327 Identities=11% Similarity=0.037 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHH
Q 012126 95 NSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILEL 174 (470)
Q Consensus 95 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 174 (470)
...+..+...+.+.|++++|...++.+.... |.+..++..+...+...|++++|+..|+++.+. .|+.......+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHH
Confidence 4556666677777777777777777776654 456667777777777777777777777776653 2322222223333
Q ss_pred HHhcCCChhhHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 012126 175 LVTHRNYLRPAFDLFKSAHKHGVL--PNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQV 252 (470)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 252 (470)
++...|++++|...|+++.+.... .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 333444455555555555544310 02222222210000 00011113445555555
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhc
Q 012126 253 NRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDM 332 (470)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 332 (470)
++|++.++++.+.... +...+..+..++...|++++|...+++..+.. +.+...+..+...+...|++++|...+++.
T Consensus 137 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555544322 44455555555555555555555555555442 224455555555555555555555555555
Q ss_pred hhCCCCCCHHHHH------------HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHH
Q 012126 333 PSNGCLPNLVSYR------------TLVGGLCDQGMFDVAKKYMQLMISKGFSPHF----SVSHALIKGFCNVGKVDEAC 396 (470)
Q Consensus 333 ~~~~~~p~~~~~~------------~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~ 396 (470)
.+.. +.+...+. .+...+...|++++|...++++.+.. +.+. ..+..+..++...|++++|.
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 5432 11122111 22445667777777777777776643 1122 22344566677777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHccccCCceeeecccc
Q 012126 397 GVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVEIKGDTRIVEAGIG 454 (470)
Q Consensus 397 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~~~ 454 (470)
+.+++.++.. +.+..+|..+..++...|++++|.+.++++++ +.|+.......+.
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~ 347 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLE 347 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHH
Confidence 7777776643 22566777777777777777777777777774 3455444333333
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=7.4e-21 Score=185.81 Aligned_cols=342 Identities=11% Similarity=-0.047 Sum_probs=278.4
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHH
Q 012126 95 NSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILEL 174 (470)
Q Consensus 95 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 174 (470)
...+......+.+.|++++|...|+.+.... |++.++..+..+|...|++++|++.|+++.+.+ |+.......+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHH
Confidence 4567777888999999999999999999876 589999999999999999999999999998843 655444444555
Q ss_pred HHhcCCChhhHHHHHHHHHHCCCCC-------------------------------------------------------
Q 012126 175 LVTHRNYLRPAFDLFKSAHKHGVLP------------------------------------------------------- 199 (470)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~------------------------------------------------------- 199 (470)
++...|++++|...|+++.+.+...
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 5557778999999999998765310
Q ss_pred -----------------------CHHHHHHHHHHHHh---cCChhHHHHHHHHHHH-----CCC--------CCCHHHHH
Q 012126 200 -----------------------NTKSYNIMMRAFCF---NGDISIAYTLFNKMFE-----RGV--------MPDVESYR 240 (470)
Q Consensus 200 -----------------------~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~~~--------~p~~~~~~ 240 (470)
+...+......+.. .|++++|..+|+++.+ ... +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 13333333333443 8999999999999987 311 12456788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 012126 241 ILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREG 320 (470)
Q Consensus 241 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 320 (470)
.+...+...|++++|+..++++.+.... ..++..+..++...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 8899999999999999999999887544 8888999999999999999999999998763 346778899999999999
Q ss_pred CHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 012126 321 RAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLE 400 (470)
Q Consensus 321 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 400 (470)
++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998864 2356788889999999999999999999998863 3456788999999999999999999999
Q ss_pred HHHHCCCC-CC----HHHHHHHHHHHHc---CCcHHHHHHHHHHHHHccccCCce
Q 012126 401 ELLKAGEA-PH----EDTWVMIVPQICA---GEEMEKLGEVLNEIVKVEIKGDTR 447 (470)
Q Consensus 401 ~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~ 447 (470)
++.+.... ++ ...|..+..++.. .|++++|.+.++++++. .|+..
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~ 449 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSE 449 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccH
Confidence 98764311 11 3388999999999 99999999999999865 35443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=2.7e-19 Score=166.04 Aligned_cols=325 Identities=12% Similarity=0.013 Sum_probs=246.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 012126 63 CRVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAE 142 (470)
Q Consensus 63 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 142 (470)
..++..+...|+++.|+..|+.+.... +.+...+..+...+...|++++|...++.+.+.. |.+...+..+...|..
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHH
Confidence 355677889999999999999987654 4578899999999999999999999999998875 6678899999999999
Q ss_pred cCCchhHHHHHHHHHhCCCcc---CHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 012126 143 SNLPDRALKTFRSMLEFNCKP---LPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISI 219 (470)
Q Consensus 143 ~g~~~~A~~~~~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 219 (470)
.|++++|+..|+++.+. .| +.......+..+. ....+..+...+...|++++
T Consensus 84 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-----------------------EMQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTTCHHH
T ss_pred cCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHccCHHH
Confidence 99999999999999884 45 3332222221111 11234445667778888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012126 220 AYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKV 299 (470)
Q Consensus 220 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 299 (470)
|.++++++.+.... +...+..+..++...|++++|+..++++.+.... +..++..+...+...|++++|...+++..+
T Consensus 139 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 139 AITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888888776433 6677778888888888888888888888776543 667777888888888888888888888776
Q ss_pred cCCCCCHHHHH------------HHHHHHHhcCCHhHHHHHHHhchhCCCCCC-H----HHHHHHHHHHHhcCChHHHHH
Q 012126 300 KGCNPDIVHYN------------TVVLGFCREGRAIDACKVLEDMPSNGCLPN-L----VSYRTLVGGLCDQGMFDVAKK 362 (470)
Q Consensus 300 ~~~~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~----~~~~~li~~~~~~g~~~~a~~ 362 (470)
.. +.+...+. .+...+.+.|++++|...++++.+.. |+ . ..+..+...+...|++++|..
T Consensus 217 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 217 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 52 22233222 23566888999999999999988753 33 2 234557788899999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012126 363 YMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQIC 422 (470)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 422 (470)
.+++..+.. +.+..++..+..+|...|++++|.+.|++.++... -+...+..+..+..
T Consensus 294 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 294 ICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHH
Confidence 999998863 44678899999999999999999999999988542 23556666555443
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=7.1e-19 Score=161.28 Aligned_cols=292 Identities=12% Similarity=-0.062 Sum_probs=198.6
Q ss_pred CCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCH-HHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHH
Q 012126 128 VTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLP-KQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNI 206 (470)
Q Consensus 128 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 206 (470)
.+...+..+...+...|++++|+++|+++.+.. |+. ..+..+...+ ...|++++|..+++++.+.... +...|..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 95 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTL-VELNKANELFYLSHKLVDLYPS-NPVSWFA 95 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTT-STHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHH-HHhhhHHHHHHHHHHHHHhCcC-CHHHHHH
Confidence 444556666666666677777777776666532 222 2222222222 2444566677766666654432 5667777
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 012126 207 MMRAFCFNG-DISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKK 285 (470)
Q Consensus 207 li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 285 (470)
+...+...| ++++|.+.|++..+.... +...|..+..++...|++++|++.++++.+.... +...+..+...|...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh
Confidence 777777777 788888888877766433 4566777777888888888888888887766433 4455666777788888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCC--------CCCCHHHHHHHHHHHHhcCCh
Q 012126 286 KLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNG--------CLPNLVSYRTLVGGLCDQGMF 357 (470)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~ 357 (470)
++++|...+++..+.. +.+...+..+...+...|++++|...++++.+.. ...+...+..+...+...|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 8888888888877653 3356777777888888888888888887766531 123456778888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HcCCcHH
Q 012126 358 DVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQI-CAGEEME 428 (470)
Q Consensus 358 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~ 428 (470)
++|...++++.+.. +.+...+..+..+|...|++++|.+.|++..+.. +.+...+..+..++ ...|+.+
T Consensus 253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 88888888888753 3356778888888888888888888888887754 23566777777777 3455543
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=4.7e-16 Score=150.85 Aligned_cols=351 Identities=13% Similarity=0.048 Sum_probs=294.8
Q ss_pred hHHHHHHHhc----CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHc----cCCchHHHHHHHHHhhCCCCCCHHHH
Q 012126 62 PCRVQKLIAS----QSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGR----AKYFSLIDDILITLKSEHYPVTPSLF 133 (470)
Q Consensus 62 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 133 (470)
...+...+.. .++++.|+..|+.+...+ +...+..+...+.. .+++++|..++++..+.+ ++..+
T Consensus 42 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 42 QLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 3455566666 899999999999987653 56788888888888 899999999999998876 67888
Q ss_pred HHHHHHHHH----cCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHCCCCCCHHHHHH
Q 012126 134 TYLIKIYAE----SNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVT---HRNYLRPAFDLFKSAHKHGVLPNTKSYNI 206 (470)
Q Consensus 134 ~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 206 (470)
..|...|.. .+++++|++.|++..+.| +...+..+-..+.. ..++.++|.+.|++..+.| +...+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 889999988 889999999999998865 34444444444433 1567999999999999875 7788899
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 012126 207 MMRAFCF----NGDISIAYTLFNKMFERGVMPDVESYRILMQGLCR----KSQVNRAVDLLEDMLNKGFVPDTLSYTTLL 278 (470)
Q Consensus 207 li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 278 (470)
+...|.. .+++++|.++|++..+.| +...+..+...|.. .+++++|+++|++..+.| +...+..+.
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 262 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLG 262 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 9999988 899999999999998876 66788888888887 889999999999998875 556777788
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHhHHHHHHHhchhCCCCCCHHHHHHHHH
Q 012126 279 NSLCR----KKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCRE-----GRAIDACKVLEDMPSNGCLPNLVSYRTLVG 349 (470)
Q Consensus 279 ~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 349 (470)
.+|.. .++.++|...|++..+.| +...+..+...|... +++++|+..|++..+.| +...+..+..
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 336 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGA 336 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHH
Confidence 88887 899999999999998775 566777888888887 89999999999998875 5667777888
Q ss_pred HHHhcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012126 350 GLCDQG---MFDVAKKYMQLMISKGFSPHFSVSHALIKGFCN----VGKVDEACGVLEELLKAGEAPHEDTWVMIVPQIC 422 (470)
Q Consensus 350 ~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 422 (470)
.|...| +.++|..++++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..|...|.
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~ 410 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYY 410 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 887766 7899999999999874 67788888888988 899999999999999876 6788888999898
Q ss_pred c----CCcHHHHHHHHHHHHHcccc
Q 012126 423 A----GEEMEKLGEVLNEIVKVEIK 443 (470)
Q Consensus 423 ~----~g~~~~a~~~~~~m~~~~~~ 443 (470)
. .++.++|.+.|++..+.+..
T Consensus 411 ~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 411 YGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 8 89999999999999988743
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=1.2e-18 Score=171.25 Aligned_cols=342 Identities=14% Similarity=0.074 Sum_probs=260.9
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHH
Q 012126 95 NSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILEL 174 (470)
Q Consensus 95 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 174 (470)
...+..+...+.+.|++++|...|+.+.... |.++.++..+..+|...|++++|++.|+++.+. .|+.......+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEI--KPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHH
Confidence 4567888889999999999999999998876 678999999999999999999999999999884 3655555555555
Q ss_pred HHhcCCChhhHHHHHHHHHHCCCC------------------------------------CCHH----------------
Q 012126 175 LVTHRNYLRPAFDLFKSAHKHGVL------------------------------------PNTK---------------- 202 (470)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~------------------------------------~~~~---------------- 202 (470)
+....|++++|...|+.+...... |+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 555777899999999643211100 1111
Q ss_pred --------------HHHHHHHHHH--------hcCChhHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHHcCChH
Q 012126 203 --------------SYNIMMRAFC--------FNGDISIAYTLFNKMFERGVMPD-------VESYRILMQGLCRKSQVN 253 (470)
Q Consensus 203 --------------~~~~li~~~~--------~~g~~~~a~~~~~~m~~~~~~p~-------~~~~~~ll~~~~~~~~~~ 253 (470)
....+...+. ..|++++|..+|+++.+.... + ..++..+...+...|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHH
Confidence 1111111111 124788999999998876433 2 235667778888999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhch
Q 012126 254 RAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMP 333 (470)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 333 (470)
+|+..++++.+.. |+..++..+...+...|++++|...++++.+.. +.+..+|..+...+...|++++|...++++.
T Consensus 261 ~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 261 DAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999998864 457788889999999999999999999998764 3467889999999999999999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----C
Q 012126 334 SNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGE-----A 408 (470)
Q Consensus 334 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~ 408 (470)
+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.|+++++... .
T Consensus 338 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 338 SLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp HHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence 764 2346788889999999999999999999998864 44567888999999999999999999999876421 1
Q ss_pred CCHHHHHHHHHHHHcC----------CcHHHHHHHHHHHHHccccCCce
Q 012126 409 PHEDTWVMIVPQICAG----------EEMEKLGEVLNEIVKVEIKGDTR 447 (470)
Q Consensus 409 p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~p~~~ 447 (470)
.....+..+..++... |++++|...++++++. .|+..
T Consensus 416 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~ 462 (537)
T 3fp2_A 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSE 462 (537)
T ss_dssp STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCH
Confidence 1222344555667777 9999999999999865 35443
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=3.4e-18 Score=156.71 Aligned_cols=289 Identities=10% Similarity=-0.045 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 012126 96 STYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELL 175 (470)
Q Consensus 96 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 175 (470)
..+..+...+...|++++|.++++.+.+.. |.+...+..++..+...|++++|+..++++.+. .|+.......+..+
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFAVGCY 99 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHH
Confidence 344444555555555555555555555443 334444555555555556666666666555542 22222222222222
Q ss_pred HhcCC-ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Q 012126 176 VTHRN-YLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNR 254 (470)
Q Consensus 176 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 254 (470)
+...| ++++|...|++..+.... +...|..+...+...|++++|.+.|++..+.... +...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHH
Confidence 22333 556666666666554322 4566777777777777777777777777665433 34555567777777777777
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCCHhHHH
Q 012126 255 AVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKG--------CNPDIVHYNTVVLGFCREGRAIDAC 326 (470)
Q Consensus 255 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~ 326 (470)
|++.++++.+.... +..++..+...+...|++++|...+++..+.. .+.....+..+...|.+.|++++|.
T Consensus 178 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 77777777766433 56677777777777777777777777766531 1223456777777777777777777
Q ss_pred HHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCCH
Q 012126 327 KVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGF-CNVGKV 392 (470)
Q Consensus 327 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~ 392 (470)
..+++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++ ...|+.
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 7777776643 2345667777777777788888887777776642 33555666666666 445543
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=6.4e-18 Score=157.53 Aligned_cols=256 Identities=15% Similarity=0.084 Sum_probs=188.7
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 012126 178 HRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVD 257 (470)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 257 (470)
..|++++|...|+++.+... .+...+..+..++...|++++|.+.|+++.+.+.. +..++..+..++...|++++|++
T Consensus 76 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 153 (368)
T 1fch_A 76 QEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACE 153 (368)
T ss_dssp HTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 34445666666666555442 25666777777777777777777777777766433 66677777777777777777777
Q ss_pred HHHHHHhCCCCCCHhhHHH---------------HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 012126 258 LLEDMLNKGFVPDTLSYTT---------------LLNSLCRKKKLREAYKLLCRMKVKGCNP-DIVHYNTVVLGFCREGR 321 (470)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~---------------ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~ 321 (470)
.++++.+.... +...+.. .+..+...|++++|...++++.+..... +..++..+...|.+.|+
T Consensus 154 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~ 232 (368)
T 1fch_A 154 ILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE 232 (368)
T ss_dssp HHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCC
Confidence 77777765433 2222211 2333348899999999999988763211 47888889999999999
Q ss_pred HhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 012126 322 AIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEE 401 (470)
Q Consensus 322 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 401 (470)
+++|+..++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|...|++
T Consensus 233 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 310 (368)
T 1fch_A 233 YDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLE 310 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999988753 3357788889999999999999999999988863 45677889999999999999999999999
Q ss_pred HHHCCCCC----------CHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 012126 402 LLKAGEAP----------HEDTWVMIVPQICAGEEMEKLGEVLNEIV 438 (470)
Q Consensus 402 ~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 438 (470)
+++..... ...+|..+..+|...|++++|..++++.+
T Consensus 311 al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 311 ALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 87642211 26789999999999999999998876543
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=6.4e-18 Score=157.55 Aligned_cols=288 Identities=8% Similarity=-0.075 Sum_probs=186.2
Q ss_pred CCchHHHH-HHHHHhhCCC---CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhh
Q 012126 109 KYFSLIDD-ILITLKSEHY---PVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRP 184 (470)
Q Consensus 109 ~~~~~a~~-~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 184 (470)
+++++|.. .++....... ..+...+..+...+...|++++|+..|+++.+. .|+.......+..++...|++++
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHH
Confidence 45555555 5554433210 002334555666666666666666666666653 23333333333333345555666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHHc
Q 012126 185 AFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRI---------------LMQGLCRK 249 (470)
Q Consensus 185 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~---------------ll~~~~~~ 249 (470)
|...|+++.+... .+..++..+...|...|++++|.+.|+++.+.... +...+.. .+..+...
T Consensus 117 A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 6666666665543 26677777777777778888888877777765432 2222211 23334478
Q ss_pred CChHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 012126 250 SQVNRAVDLLEDMLNKGFVP-DTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKV 328 (470)
Q Consensus 250 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 328 (470)
|++++|+..++++.+..... +..++..+..+|.+.|++++|...++++.+.. +.+...|..+...+...|++++|...
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888887764332 46778888888888888888888888887763 33567788888888888888888888
Q ss_pred HHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHccCCHHHHHHH
Q 012126 329 LEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFS----------PHFSVSHALIKGFCNVGKVDEACGV 398 (470)
Q Consensus 329 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~~a~~~ 398 (470)
++++.+.. +.+...+..+..+|.+.|++++|...++++.+.... ....+|..+..+|...|++++|..+
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 88887753 335677888888888888888888888888764211 1257888888888888988888888
Q ss_pred HHHH
Q 012126 399 LEEL 402 (470)
Q Consensus 399 ~~~~ 402 (470)
+++.
T Consensus 353 ~~~~ 356 (368)
T 1fch_A 353 DARD 356 (368)
T ss_dssp HTTC
T ss_pred HHHH
Confidence 7643
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=1.5e-14 Score=140.32 Aligned_cols=321 Identities=12% Similarity=0.064 Sum_probs=270.2
Q ss_pred CHHHHHHHHHHHHc----cCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCchhHHHHHHHHHhCCCccCH
Q 012126 94 SNSTYLILILKLGR----AKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAE----SNLPDRALKTFRSMLEFNCKPLP 165 (470)
Q Consensus 94 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~ 165 (470)
+...+..+...+.. .+++++|...++...+.+ ++..+..|...|.. .+++++|++.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 56667777777776 899999999999998875 67889999999999 899999999999998865 44
Q ss_pred HHHHHHHHHHHhc---CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHH
Q 012126 166 KQLNRILELLVTH---RNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCF----NGDISIAYTLFNKMFERGVMPDVES 238 (470)
Q Consensus 166 ~~~~~ll~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~ 238 (470)
..+..+-..+... .+++++|...|++..+.| +...+..|...|.. .+++++|.++|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 4444444444331 567999999999999875 67788888888887 889999999999999876 7788
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 012126 239 YRILMQGLCR----KSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCR----KKKLREAYKLLCRMKVKGCNPDIVHYN 310 (470)
Q Consensus 239 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~ 310 (470)
+..+...|.. .++.++|++.|++..+.| +...+..+..+|.. .++.++|...|++..+.| +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 8889999988 899999999999998875 56778888888886 889999999999998875 566777
Q ss_pred HHHHHHHh----cCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHH
Q 012126 311 TVVLGFCR----EGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQ-----GMFDVAKKYMQLMISKGFSPHFSVSHA 381 (470)
Q Consensus 311 ~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~ 381 (470)
.+...|.. .++.++|+..|++..+.| +...+..+...|... +++++|...+++..+.| +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 78888887 899999999999998765 566777788888877 89999999999999875 4567777
Q ss_pred HHHHHHccC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCcHHHHHHHHHHHHHcc
Q 012126 382 LIKGFCNVG---KVDEACGVLEELLKAGEAPHEDTWVMIVPQICA----GEEMEKLGEVLNEIVKVE 441 (470)
Q Consensus 382 li~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 441 (470)
+...|...| ++++|.++|++..+.| +...+..|...|.. .+++++|.+.+++..+.+
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 888887766 8899999999999874 78889999999988 899999999999998865
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=2.9e-17 Score=152.97 Aligned_cols=274 Identities=12% Similarity=-0.034 Sum_probs=164.4
Q ss_pred ChHHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 012126 61 SPCRVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIY 140 (470)
Q Consensus 61 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 140 (470)
.....+..+...|+++.|+..|+.+.... +.+...+..+...+.+.|++++|...++++.... |.+..++..+...|
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34555666677777777777777776543 3456677777777777777777777777776654 45667777777777
Q ss_pred HHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 012126 141 AESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIA 220 (470)
Q Consensus 141 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 220 (470)
...|++++|++.|+++.+.+ |+.......+ ......+..+...+...|++++|
T Consensus 144 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~g~~~~A 196 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQN--PKYKYLVKNK-------------------------KGSPGLTRRMSKSPVDSSVLEGV 196 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhC--ccchHHHhhh-------------------------ccchHHHHHHHHHHhhhhhHHHH
Confidence 77777777777777766522 2111100000 00122344455666666777777
Q ss_pred HHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012126 221 YTLFNKMFERGVM-PDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKV 299 (470)
Q Consensus 221 ~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 299 (470)
.++|+++.+.... .+..++..+...|...|++++|++.|+++.+.... +..++..+..+|.+.|++++|...|++..+
T Consensus 197 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 275 (365)
T 4eqf_A 197 KELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALE 275 (365)
T ss_dssp HHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777766665322 14566666667777777777777777776665433 556666677777777777777777777665
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCC-----------CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 012126 300 KGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCL-----------PNLVSYRTLVGGLCDQGMFDVAKKYMQL 366 (470)
Q Consensus 300 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----------p~~~~~~~li~~~~~~g~~~~a~~~~~~ 366 (470)
.. +.+..++..+..+|.+.|++++|...|+++.+.... .+...|..+..++...|+.+.+..+..+
T Consensus 276 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 276 IQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred cC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 52 223566666777777777777777777766543100 1245667777777777777777666554
No 22
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=5.6e-19 Score=174.83 Aligned_cols=151 Identities=15% Similarity=0.217 Sum_probs=126.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFE---RGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTT 276 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 276 (470)
-..|||+||++||+.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 457899999999999999999999988764 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCC------HHHHHHHHH
Q 012126 277 LLNSLCRKKK-LREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPN------LVSYRTLVG 349 (470)
Q Consensus 277 ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~li~ 349 (470)
+|+++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.+. .+++..+++ ..+..|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999998 578999999999999999999999999776654 344445554 2334443 334444555
Q ss_pred HHHhcC
Q 012126 350 GLCDQG 355 (470)
Q Consensus 350 ~~~~~g 355 (470)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 555544
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=5.3e-17 Score=148.52 Aligned_cols=275 Identities=13% Similarity=0.009 Sum_probs=156.7
Q ss_pred ChHHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 012126 61 SPCRVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIY 140 (470)
Q Consensus 61 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 140 (470)
........+...|+++.|+.+|+.+.... +.+...+..+...+.+.|++++|...++.+.+.. |.+..++..+...|
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 44566788889999999999999987654 4578888899999999999999999999998875 66788899999999
Q ss_pred HHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCChh
Q 012126 141 AESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMR--AFCFNGDIS 218 (470)
Q Consensus 141 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~ 218 (470)
...|++++|++.|+++.+.. |+.......+.. ..|+......+.. .+...|+++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQ----------------------ADVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS--TTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhH----------------------HHHHHHHHHHHHHhHHHHHcccHH
Confidence 99999999999999988743 322211111100 0001111111111 133444455
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012126 219 IAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMK 298 (470)
Q Consensus 219 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 298 (470)
+|.+.++++.+.... +..++..+...+...|++++|++.++++.+.... +..++..+..++...|++++|...+++..
T Consensus 156 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555554443322 3444444455555555555555555554443222 34444455555555555555555555544
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCC-----------CHHHHHHHHHHHHhcCChHHHHHHHH
Q 012126 299 VKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLP-----------NLVSYRTLVGGLCDQGMFDVAKKYMQ 365 (470)
Q Consensus 299 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~a~~~~~ 365 (470)
+.. +.+...+..+...|.+.|++++|...++++.+..... +...|..+..++...|++++|..+++
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 432 1234444455555555555555555555544321110 23445555555555555555555544
No 24
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=5.6e-19 Score=174.81 Aligned_cols=115 Identities=20% Similarity=0.240 Sum_probs=63.4
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHH
Q 012126 271 TLSYTTLLNSLCRKKKLREAYKLLCRMK---VKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTL 347 (470)
Q Consensus 271 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 347 (470)
..+|++||++||+.|++++|.++|++|. ..|+.||++|||+||.+||+.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3455555555555555555555555443 2345555555555555555555555555555555555555555555555
Q ss_pred HHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012126 348 VGGLCDQGMF-DVAKKYMQLMISKGFSPHFSVSHALIKG 385 (470)
Q Consensus 348 i~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~ 385 (470)
|.++++.|+. ++|.++|++|.+.|+.||..+|++++..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence 5555555542 4555555555555555555555555543
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=8.3e-17 Score=147.20 Aligned_cols=235 Identities=11% Similarity=-0.002 Sum_probs=172.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHH--
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTL-- 277 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-- 277 (470)
+...+..+...+...|++++|.+.|+++.+.... +..++..+...+...|++++|++.++++.+.... +...+..+
T Consensus 54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 131 (327)
T 3cv0_A 54 REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQ 131 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhH
Confidence 4555666666666667777777766666665322 5566666666666777777777777666655332 22222222
Q ss_pred ------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHH
Q 012126 278 ------------LN-SLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSY 344 (470)
Q Consensus 278 ------------l~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 344 (470)
.. .+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+.. +.+...+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 209 (327)
T 3cv0_A 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLW 209 (327)
T ss_dssp --------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHH
Confidence 22 3667788999999999888763 3367788888899999999999999999887753 3357788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-----------CHHH
Q 012126 345 RTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAP-----------HEDT 413 (470)
Q Consensus 345 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-----------~~~~ 413 (470)
..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|.+.++++.+..... +...
T Consensus 210 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 288 (327)
T 3cv0_A 210 NKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSM 288 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHH
Confidence 888999999999999999999988863 4467788899999999999999999999987753221 3678
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHH
Q 012126 414 WVMIVPQICAGEEMEKLGEVLNEIVK 439 (470)
Q Consensus 414 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 439 (470)
|..+..++.+.|++++|..++++.++
T Consensus 289 ~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 289 WDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999876643
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=3.6e-17 Score=152.35 Aligned_cols=234 Identities=11% Similarity=0.038 Sum_probs=175.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC---------CC
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFV---------PD 270 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---------~~ 270 (470)
+..+|..+...|...|++++|...|+++.+.... +..++..+..+|...|++++|++.++++.+.... ..
T Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 176 (365)
T 4eqf_A 98 DAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGS 176 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccc
Confidence 5667777788888888888888888887776433 5777778888888888888888888887764321 01
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHH
Q 012126 271 TLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCN-PDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVG 349 (470)
Q Consensus 271 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 349 (470)
...+..+...+...|++++|...++++.+.... .+..++..+...|.+.|++++|+..++++.+.. +.+..+|..+..
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 255 (365)
T 4eqf_A 177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGA 255 (365)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 223344577888899999999999999876321 157888899999999999999999999988753 346788999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-----------CCHHHHHHHH
Q 012126 350 GLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEA-----------PHEDTWVMIV 418 (470)
Q Consensus 350 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----------p~~~~~~~l~ 418 (470)
+|...|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++++.... .+...|..+.
T Consensus 256 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~ 334 (365)
T 4eqf_A 256 TLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALR 334 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHH
Confidence 9999999999999999998863 445788899999999999999999999998764211 1357889999
Q ss_pred HHHHcCCcHHHHHHHHHH
Q 012126 419 PQICAGEEMEKLGEVLNE 436 (470)
Q Consensus 419 ~~~~~~g~~~~a~~~~~~ 436 (470)
.++...|+.+.+.++.++
T Consensus 335 ~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 335 IALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHTCHHHHHHHHTT
T ss_pred HHHHHcCcHHHHHHHHHh
Confidence 999999999888877654
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=3.6e-15 Score=146.14 Aligned_cols=362 Identities=9% Similarity=0.002 Sum_probs=209.2
Q ss_pred hcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHH-HHcCCchh
Q 012126 70 ASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIY-AESNLPDR 148 (470)
Q Consensus 70 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~ 148 (470)
...|+.+.|..+|+.+.... |.+...|...+..+.+.|++++|..+|+++.... |+...|...+... ...|+.+.
T Consensus 23 ~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~ 98 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPS 98 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTT
T ss_pred HHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhh
Confidence 56899999999999998664 5678899999999999999999999999998875 4788888777533 45688888
Q ss_pred HHH----HHHHHHh-CCCcc-CHHHHHHHHHHHHh--------cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH--
Q 012126 149 ALK----TFRSMLE-FNCKP-LPKQLNRILELLVT--------HRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFC-- 212 (470)
Q Consensus 149 A~~----~~~~~~~-~~~~p-~~~~~~~ll~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-- 212 (470)
|.+ +|++.+. .|..| +...|...+..... ..|+++.|..+|++.++.........|........
T Consensus 99 a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~ 178 (530)
T 2ooe_A 99 YKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGI 178 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhh
Confidence 776 6776654 35444 45566666555432 14568999999999998421111344544443321
Q ss_pred -----------hcCChhHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHHc----CCh----HHHH
Q 012126 213 -----------FNGDISIAYTLFNKMF------ERG---VMPD--------VESYRILMQGLCRK----SQV----NRAV 256 (470)
Q Consensus 213 -----------~~g~~~~a~~~~~~m~------~~~---~~p~--------~~~~~~ll~~~~~~----~~~----~~a~ 256 (470)
..++++.|..++.++. +.. +.|+ ...|...+...... ++. +.+.
T Consensus 179 ~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~ 258 (530)
T 2ooe_A 179 NIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVM 258 (530)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHH
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHH
Confidence 2334566666555421 111 2222 12333333222111 121 2455
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 012126 257 DLLEDMLNKGFVPDTLSYTTLLNSLCR-------KKKLR-------EAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRA 322 (470)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 322 (470)
.+|++++...+. +...|..+...+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++
T Consensus 259 ~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~ 337 (530)
T 2ooe_A 259 FAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY 337 (530)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH
Confidence 556665554322 45555555555543 45554 5666666665421222455566666666666666
Q ss_pred hHHHHHHHhchhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCHHHHHHHH
Q 012126 323 IDACKVLEDMPSNGCLPN--LVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKG-FCNVGKVDEACGVL 399 (470)
Q Consensus 323 ~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~ 399 (470)
++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|++..+.. +.+...|...... +...|++++|..+|
T Consensus 338 ~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~ 414 (530)
T 2ooe_A 338 EKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIF 414 (530)
T ss_dssp HHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence 6666666666653 232 1355555555556666666666666665532 1122222221111 22456666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 012126 400 EELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 400 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 440 (470)
++.++.. +.+...|..++..+.+.|+.++|..+|++++..
T Consensus 415 e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 415 ELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 6655532 124556666666666666666666666666554
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=1.5e-14 Score=141.64 Aligned_cols=370 Identities=9% Similarity=0.006 Sum_probs=265.1
Q ss_pred HHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH-HccCCchHHHH----HHHHHhhC-CC-CCCHHHHHHH
Q 012126 64 RVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKL-GRAKYFSLIDD----ILITLKSE-HY-PVTPSLFTYL 136 (470)
Q Consensus 64 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~-~~~~~~~~~l 136 (470)
....+....|+.+.|..+|+.+.... |+...|...+... ...|+++.|.+ +|+..... |. +.+..+|...
T Consensus 51 ~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~ 127 (530)
T 2ooe_A 51 LYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDY 127 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 44566778899999999999998664 4777777776533 45678887765 67666543 43 3467888888
Q ss_pred HHHHHH---------cCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHh------------cCCChhhHHHHHHHHH--
Q 012126 137 IKIYAE---------SNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVT------------HRNYLRPAFDLFKSAH-- 193 (470)
Q Consensus 137 i~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~------------~~~~~~~a~~~~~~~~-- 193 (470)
+..... .|+++.|..+|++.+..........|......... ..+.+..|..++..+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~ 207 (530)
T 2ooe_A 128 INFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETV 207 (530)
T ss_dssp HHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 887665 78899999999999883211112333332221110 1223556666666532
Q ss_pred ----HCC---CCCC--------HHHHHHHHHHHHhc----CCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--
Q 012126 194 ----KHG---VLPN--------TKSYNIMMRAFCFN----GDI----SIAYTLFNKMFERGVMPDVESYRILMQGLCR-- 248 (470)
Q Consensus 194 ----~~~---~~~~--------~~~~~~li~~~~~~----g~~----~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-- 248 (470)
+.. +.|+ ...|...+...... ++. +.+..+|++.....+ -+...|..++..+.+
T Consensus 208 ~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~ 286 (530)
T 2ooe_A 208 MKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSS 286 (530)
T ss_dssp HHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhc
Confidence 211 2333 24566555443322 232 377889999887643 378888888888876
Q ss_pred -----cCChH-------HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H-HHHHHHHH
Q 012126 249 -----KSQVN-------RAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPD-I-VHYNTVVL 314 (470)
Q Consensus 249 -----~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~-~~~~~li~ 314 (470)
.|+++ +|..+|++..+.-.+-+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++.
T Consensus 287 ~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~ 364 (530)
T 2ooe_A 287 KLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMK 364 (530)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHH
T ss_pred hhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHH
Confidence 69987 89999999986322336788999999999999999999999999986 454 2 57888999
Q ss_pred HHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 012126 315 GFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGG-LCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVD 393 (470)
Q Consensus 315 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 393 (470)
.+.+.|++++|..+|++..+.. +.+...|...+.. +...|+.++|..+|+..++.. +.+...|..++..+.+.|+.+
T Consensus 365 ~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~ 442 (530)
T 2ooe_A 365 FARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDN 442 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHh
Confidence 8999999999999999998753 2233333332222 346899999999999998863 446789999999999999999
Q ss_pred HHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcc
Q 012126 394 EACGVLEELLKAGE-AP--HEDTWVMIVPQICAGEEMEKLGEVLNEIVKVE 441 (470)
Q Consensus 394 ~a~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 441 (470)
+|..+|++.+..+. .| ....|...+......|+.+.+..+.+++.+.-
T Consensus 443 ~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 443 NTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 99999999998642 22 24488888888888999999999999998653
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=3.3e-16 Score=140.49 Aligned_cols=249 Identities=14% Similarity=0.100 Sum_probs=126.6
Q ss_pred HHHHcCCchhHHHHHHHHHhCCCccCHH--HHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 012126 139 IYAESNLPDRALKTFRSMLEFNCKPLPK--QLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGD 216 (470)
Q Consensus 139 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 216 (470)
.....|+++.|+..++..... .|+.. ....+...+. ..|+++.|...++. .-.|+..++..+...+...|+
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi-~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYL-AQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHH-HTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHH-HCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 334566666666666554332 23321 1122222222 34445555554432 122345555555566666666
Q ss_pred hhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 012126 217 ISIAYTLFNKMFERGVMP-DVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLC 295 (470)
Q Consensus 217 ~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 295 (470)
.++|.+.++++...+..| +...+..+..++...|++++|++.+++ ..+...+..+..+|.+.|++++|...++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666666665554333 334444445556666666666666554 2345555555666666666666666666
Q ss_pred HHHHcCCCCCHHHH---HHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 012126 296 RMKVKGCNPDIVHY---NTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGF 372 (470)
Q Consensus 296 ~m~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 372 (470)
++.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++++++..
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 665542 332111 11222233345566666666665554 23345555555556666666666666666655542
Q ss_pred CCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHH
Q 012126 373 SPHFSVSHALIKGFCNVGKVDE-ACGVLEELLK 404 (470)
Q Consensus 373 ~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~ 404 (470)
+-+..++..++..+...|+.++ +.++++++++
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2344555555555555555543 3455555555
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=5.8e-15 Score=142.45 Aligned_cols=361 Identities=13% Similarity=-0.021 Sum_probs=154.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhhcC-------CCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhC-----C--CCC
Q 012126 63 CRVQKLIASQSDPLLAKEIFDYASRQ-------PNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSE-----H--YPV 128 (470)
Q Consensus 63 ~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~ 128 (470)
..++.+....|+.++|++.|+.+... ..-+....+|..+...+...|++++|...+++..+. + ...
T Consensus 55 n~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~ 134 (472)
T 4g1t_A 55 NLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIE 134 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchh
Confidence 34445555555555555555544220 001123345555555555555555555555544321 0 011
Q ss_pred CHHHHHHHHHHHHHc--CCchhHHHHHHHHHhCCCccCHHHHHHHHHHH---HhcCCChhhHHHHHHHHHHCCCCCCHHH
Q 012126 129 TPSLFTYLIKIYAES--NLPDRALKTFRSMLEFNCKPLPKQLNRILELL---VTHRNYLRPAFDLFKSAHKHGVLPNTKS 203 (470)
Q Consensus 129 ~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 203 (470)
.+.++..+..++... +++++|++.|++..+. .|+...+..-+..+ ....+..++|++.+++..+.... +...
T Consensus 135 ~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~ 211 (472)
T 4g1t_A 135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYL 211 (472)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHH
T ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHH
Confidence 234444444444333 2355555555555542 23322222211111 11233345555555555544321 3344
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 012126 204 YNIMMRAFCF----NGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLN 279 (470)
Q Consensus 204 ~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 279 (470)
+..+...+.. .|++++|.+++++....... +..++..+...|...|++++|++.+++..+..+. +..++..+..
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 289 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGC 289 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHH
Confidence 4433333322 23445555555555544322 4445555555555555555555555555554322 3444444444
Q ss_pred HHHhc-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCC
Q 012126 280 SLCRK-------------------KKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPN 340 (470)
Q Consensus 280 ~~~~~-------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 340 (470)
+|... +..+.|...++...+.. +.+...+..+...|...|++++|+..|++..+....+.
T Consensus 290 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~ 368 (472)
T 4g1t_A 290 CYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV 368 (472)
T ss_dssp HHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh
Confidence 43221 12334444444444332 12334444555555555555555555555554322111
Q ss_pred HH--HHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012126 341 LV--SYRTLVG-GLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMI 417 (470)
Q Consensus 341 ~~--~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 417 (470)
.. .+..+.. .....|+.++|+..+.+.++. .|+.... .+..+.+.++++..++.+ +.+..+|..+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~---------~~~~~~l~~~~~~~l~~~-p~~~~~~~~L 436 (472)
T 4g1t_A 369 AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREK---------EKMKDKLQKIAKMRLSKN-GADSEALHVL 436 (472)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHH---------HHHHHHHHHHHHHHHHHC-C-CTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHH---------HHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 10 1111111 123445555555555555543 2221111 111222333344443333 2356789999
Q ss_pred HHHHHcCCcHHHHHHHHHHHHHcc
Q 012126 418 VPQICAGEEMEKLGEVLNEIVKVE 441 (470)
Q Consensus 418 ~~~~~~~g~~~~a~~~~~~m~~~~ 441 (470)
..+|...|++++|++.|++.++.+
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHCC-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999764
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=3.8e-17 Score=150.09 Aligned_cols=220 Identities=10% Similarity=0.091 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012126 132 LFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAF 211 (470)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 211 (470)
+|..|+.++.+.|++++|++.|.+. +|...|..+...+. ..|.+++|...++..++. .+++.+.+.++.+|
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae-~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y 104 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAAN-TSGNWEELVKYLQMARKK--ARESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHh--CccchhHHHHHHHH
Confidence 4444444444444444444444321 23333333333332 233344444433333332 12344455555555
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 012126 212 CFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAY 291 (470)
Q Consensus 212 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 291 (470)
.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+ ..|..++.++.+.|++++|.
T Consensus 105 ~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 105 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp ----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHH
T ss_pred HHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHH
Confidence 55555555554442 134445555555555555555555555543 24555555555555555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 012126 292 KLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKG 371 (470)
Q Consensus 292 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 371 (470)
+.++++ .++.+|..++.+|+..|+++.|......+. .+..-...++..|.+.|.+++|..+++..+...
T Consensus 169 ea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le 237 (449)
T 1b89_A 169 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE 237 (449)
T ss_dssp HHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST
T ss_pred HHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc
Confidence 555555 145555555555555555555544333322 122223345555555555555555555554432
Q ss_pred CCCCHHHHHHHHHHHHc
Q 012126 372 FSPHFSVSHALIKGFCN 388 (470)
Q Consensus 372 ~~~~~~~~~~li~~~~~ 388 (470)
+-...+|+-+..+|++
T Consensus 238 -~ah~~~ftel~il~~k 253 (449)
T 1b89_A 238 -RAHMGMFTELAILYSK 253 (449)
T ss_dssp -TCCHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHh
Confidence 2334444444444443
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=2e-15 Score=135.45 Aligned_cols=251 Identities=14% Similarity=0.121 Sum_probs=158.8
Q ss_pred HHHHccCCchHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCC
Q 012126 103 LKLGRAKYFSLIDDILITLKSEHYPVT--PSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRN 180 (470)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 180 (470)
+.....|+++.|+...+...... |+ ......+..+|...|+++.|+..++.. ..|+...+.. +..++...+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~-la~~~~~~~ 79 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRM-FAEYLASHS 79 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHH-HHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHH-HHHHHcCCC
Confidence 34455666666666665543332 22 223445666777777777766655331 1232333333 333334555
Q ss_pred ChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 012126 181 YLRPAFDLFKSAHKHGVLP-NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLL 259 (470)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 259 (470)
+.++|++.++++...+..| +...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|++.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6777777777776655334 455566666777777888888877766 346677777777788888888888888
Q ss_pred HHHHhCCCCCCHhhH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCC
Q 012126 260 EDMLNKGFVPDTLSY---TTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNG 336 (470)
Q Consensus 260 ~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 336 (470)
+++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++..+..
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8777654 332111 22334444557788888888888776 34567777778888888888888888888877653
Q ss_pred CCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHC
Q 012126 337 CLPNLVSYRTLVGGLCDQGMFDV-AKKYMQLMISK 370 (470)
Q Consensus 337 ~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~ 370 (470)
+-+..++..++..+...|+.++ +.++++++.+.
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 2356677777777777887765 56777777764
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=1.3e-16 Score=146.65 Aligned_cols=289 Identities=13% Similarity=0.023 Sum_probs=131.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 012126 64 RVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAES 143 (470)
Q Consensus 64 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 143 (470)
.+..++...|+.++|.++++... .+.+|..++.++.+.|++++|++.|.+. ++...|..++..+...
T Consensus 8 a~~~ll~~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~ 74 (449)
T 1b89_A 8 AVQVLIEHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhC
Confidence 35567778889999999999772 2358999999999999999999999652 4677899999999999
Q ss_pred CCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 012126 144 NLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTL 223 (470)
Q Consensus 144 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 223 (470)
|++++|+..++...+. .+++.+.+.++..+. ..|+++++.++++ .|+..+|+.+...|...|.+++|..+
T Consensus 75 g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~-Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~ 144 (449)
T 1b89_A 75 GNWEELVKYLQMARKK--ARESYVETELIFALA-KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLL 144 (449)
T ss_dssp -------------------------------------CHHHHTTTTT-------CC----------------CTTTHHHH
T ss_pred CCHHHHHHHHHHHHHh--CccchhHHHHHHHHH-HhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999987766653 445566666666666 4566888887774 26778999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 012126 224 FNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCN 303 (470)
Q Consensus 224 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 303 (470)
|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+.
T Consensus 145 Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----- 204 (449)
T 1b89_A 145 YNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----- 204 (449)
T ss_dssp HHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----
T ss_pred HHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----
Confidence 9976 48899999999999999999999988 278999999999999999999966555432
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCC------C
Q 012126 304 PDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQ--GMFDVAKKYMQLMISKGFSP------H 375 (470)
Q Consensus 304 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~------~ 375 (470)
..+.....++..|.+.|++++|+.+++...... +-....|+.+.-+|++- ++..+.+++|..- .+++| +
T Consensus 205 ~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~ 281 (449)
T 1b89_A 205 VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQ 281 (449)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHT
T ss_pred hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHH
Confidence 244445578899999999999999999987654 45677788877777764 3333444433311 12222 3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHH
Q 012126 376 FSVSHALIKGFCNVGKVDEACGV 398 (470)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~ 398 (470)
...|.-++..|...++++.|...
T Consensus 282 ~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 282 AHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHH
Confidence 45788888889999999988764
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=1.3e-13 Score=141.25 Aligned_cols=317 Identities=15% Similarity=0.127 Sum_probs=238.8
Q ss_pred HHHHHHhcCCChHHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 012126 64 RVQKLIASQSDPLLAKEIFDYASRQPN-FRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAE 142 (470)
Q Consensus 64 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 142 (470)
...+.+...|++.+|+++++.+...+. |.-+...-+.++...++. +..+..+....+... + ...+...+..
T Consensus 990 ~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~ 1061 (1630)
T 1xi4_A 990 VTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAIS 1061 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHh
Confidence 344667789999999999999875543 344555666677777776 456666666655422 1 3447788888
Q ss_pred cCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 012126 143 SNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYT 222 (470)
Q Consensus 143 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 222 (470)
.|.+++|..+|++... +...+..+....+.+++|.++.++. -+..+|..+..++...|++++|.+
T Consensus 1062 lglyEEAf~IYkKa~~---------~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFDV---------NTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred CCCHHHHHHHHHHcCC---------HHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999998632 2222233333455689999988865 257889999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012126 223 LFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGC 302 (470)
Q Consensus 223 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 302 (470)
.|.+. -|...|..++.++.+.|++++|+++|....+.. ++....+.++.+|++.+++++..... +
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~--- 1191 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N--- 1191 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---
Confidence 99664 278888999999999999999999999877764 34444556899999999988644442 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012126 303 NPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHAL 382 (470)
Q Consensus 303 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 382 (470)
.++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence 346677778899999999999999999985 37889999999999999999999876 345677777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 012126 383 IKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIV 438 (470)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 438 (470)
-.+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++..+
T Consensus 1257 ~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7778888887777776543 23456667777777888888888888887776
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=1.6e-14 Score=139.32 Aligned_cols=305 Identities=12% Similarity=-0.063 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHhhC--------CCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhC-----C-
Q 012126 95 NSTYLILILKLGRAKYFSLIDDILITLKSE--------HYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEF-----N- 160 (470)
Q Consensus 95 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~- 160 (470)
...|+.+...+...|++++|++.+++..+. ..+....+|+.+..+|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 344555555555555555555555543221 11223444555555555555555555555544321 0
Q ss_pred Ccc-CHHHHHHHHHHHH-hcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCChhHHHHHHHHHHHCCCCCC
Q 012126 161 CKP-LPKQLNRILELLV-THRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRA---FCFNGDISIAYTLFNKMFERGVMPD 235 (470)
Q Consensus 161 ~~p-~~~~~~~ll~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~~~~p~ 235 (470)
..+ ....+...-.++. ...+++++|...|++..+..+. +...+..+..+ +...++.++|++.+++..+.+.. +
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-N 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-C
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-c
Confidence 011 1222222211111 1233455555555555544321 33333333222 22344555555555555544322 3
Q ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 012126 236 VESYRILMQGLCR----KSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNT 311 (470)
Q Consensus 236 ~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 311 (470)
..++..+...+.. .+++++|.+.+++....... +..++..+...|...|++++|...+++..+.. +-+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 3344333333322 23445555555555544322 44455555555555555555555555555441 112333443
Q ss_pred HHHHHHhc-------------------CCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 012126 312 VVLGFCRE-------------------GRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGF 372 (470)
Q Consensus 312 li~~~~~~-------------------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 372 (470)
+...|... +.+++|...++...+.. +.+...+..+...+...|++++|...|++.++...
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 33333211 12344555555544432 12233444455555555555555555555555322
Q ss_pred CCCH--HHHHHHHH-HHHccCCHHHHHHHHHHHHH
Q 012126 373 SPHF--SVSHALIK-GFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 373 ~~~~--~~~~~li~-~~~~~g~~~~a~~~~~~~~~ 404 (470)
.+.. .++..+.. .....|+.++|+..|++.++
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2111 11122211 12344555555555555544
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=9.4e-15 Score=128.57 Aligned_cols=227 Identities=13% Similarity=0.058 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC--CC----HhhH
Q 012126 201 TKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFV--PD----TLSY 274 (470)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 274 (470)
...+..+...+...|++++|...|++..+.. .+..++..+..++...|++++|++.++++.+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567778888888888888888888888776 57788888888888888888888888887764321 11 4677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc
Q 012126 275 TTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQ 354 (470)
Q Consensus 275 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 354 (470)
..+..++...|++++|...|++..+. .|+. ..+.+.|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 88888888888888888888888775 3442 34566778888888888887742 22456677788888888
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHH
Q 012126 355 GMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVL 434 (470)
Q Consensus 355 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 434 (470)
|++++|...++++.+.. +.+..++..+..+|...|++++|...+++.++.. +.+...|..+..++...|++++|.+.+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999998888763 4467788888888889999999999999888754 235778888888899999999999999
Q ss_pred HHHHHcc
Q 012126 435 NEIVKVE 441 (470)
Q Consensus 435 ~~m~~~~ 441 (470)
+++.+..
T Consensus 231 ~~a~~~~ 237 (258)
T 3uq3_A 231 DAARTKD 237 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 8887654
No 37
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=2.8e-13 Score=120.48 Aligned_cols=225 Identities=8% Similarity=-0.084 Sum_probs=177.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHhhHH
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCR----KSQVNRAVDLLEDMLNKGFVPDTLSYT 275 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (470)
+..++..+...|...|++++|.+.|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56677777788888888888888888887743 55677777788888 888888888888887775 667777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHhchhCCCCCCHHHHHHH
Q 012126 276 TLLNSLCR----KKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCR----EGRAIDACKVLEDMPSNGCLPNLVSYRTL 347 (470)
Q Consensus 276 ~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 347 (470)
.+..+|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 78888888 888888888888887764 66777778888888 888888888888887765 56667777
Q ss_pred HHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012126 348 VGGLCD----QGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCN----VGKVDEACGVLEELLKAGEAPHEDTWVMIVP 419 (470)
Q Consensus 348 i~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 419 (470)
...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777 888888888888888764 45677777788888 888888888888888764 3677777888
Q ss_pred HHHc----CCcHHHHHHHHHHHHHccc
Q 012126 420 QICA----GEEMEKLGEVLNEIVKVEI 442 (470)
Q Consensus 420 ~~~~----~g~~~~a~~~~~~m~~~~~ 442 (470)
.|.. .+++++|.+.+++..+.+.
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 8887 8888888888888887653
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=2e-14 Score=123.14 Aligned_cols=195 Identities=14% Similarity=0.037 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012126 237 ESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGF 316 (470)
Q Consensus 237 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 316 (470)
..+..+...+...|++++|+..|++..+..+. +...+..+..++.+.|++++|...+++..+.. +.+...+..+...+
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 34444444444444444444444444443322 34444444444444444444444444444431 11233444444444
Q ss_pred Hhc-----------CCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012126 317 CRE-----------GRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKG 385 (470)
Q Consensus 317 ~~~-----------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 385 (470)
.+. |++++|+..+++..+.. +-+...+..+..++...|++++|+..+++.++.. .+...+..+..+
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 444 66666666666666532 1234556666666666677777777776666654 456666666666
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 012126 386 FCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEI 437 (470)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 437 (470)
|...|++++|...|++.++... .+...+..+..++...|++++|.+.+++.
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC--------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6677777777777776666432 24556666666666777777776666654
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=2.3e-14 Score=122.68 Aligned_cols=200 Identities=14% Similarity=0.030 Sum_probs=164.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 012126 198 LPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTL 277 (470)
Q Consensus 198 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 277 (470)
+++...+..+...+...|++++|...|++..+..+. +...+..+..++.+.|++++|+..+++..+..+. +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 356778899999999999999999999999987654 7889999999999999999999999999987654 77888999
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHH
Q 012126 278 LNSLCRK-----------KKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRT 346 (470)
Q Consensus 278 l~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 346 (470)
..++... |++++|...+++..+.. +-+...+..+...+...|++++|+..|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 99999999999998873 3357788899999999999999999999999876 68889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 012126 347 LVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELL 403 (470)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 403 (470)
+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...|++.-
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999863 4567888999999999999999999988753
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=3.4e-14 Score=126.19 Aligned_cols=248 Identities=10% Similarity=0.002 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC--HhhHHHHHH
Q 012126 202 KSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPD--TLSYTTLLN 279 (470)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~ 279 (470)
..+......+...|++++|...|++..+.... +...+..+..++...|++++|++.++++.+.+..++ ..+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34556677888999999999999999887543 556888888899999999999999999988432222 234788889
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHH
Q 012126 280 SLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDV 359 (470)
Q Consensus 280 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 359 (470)
++...|++++|...|++..+.. +.+...+..+...|...|++++|+..+++..+.. +.+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988763 3356788899999999999999999999988762 3356667766634445569999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHcCCcHHH
Q 012126 360 AKKYMQLMISKGFSPHFSVSHALIKGFCNVGK---VDEACGVLEELLKAG-EAPH------EDTWVMIVPQICAGEEMEK 429 (470)
Q Consensus 360 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~ 429 (470)
|...++++.+.. +.+...+..+..++...|+ +++|...+++..+.. -.|+ ..+|..+...|...|++++
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999998863 3446777778888888888 888888888876531 1123 2577888889999999999
Q ss_pred HHHHHHHHHHccccCCceeeecccch
Q 012126 430 LGEVLNEIVKVEIKGDTRIVEAGIGL 455 (470)
Q Consensus 430 a~~~~~~m~~~~~~p~~~~~~~~~~~ 455 (470)
|.+.++++++. .|+.......++.
T Consensus 240 A~~~~~~al~~--~p~~~~a~~~l~~ 263 (272)
T 3u4t_A 240 ADAAWKNILAL--DPTNKKAIDGLKM 263 (272)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHC-
T ss_pred HHHHHHHHHhc--CccHHHHHHHhhh
Confidence 99999999854 5766555444443
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.1e-13 Score=121.66 Aligned_cols=213 Identities=12% Similarity=0.080 Sum_probs=147.4
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CC----HHHHHHHHHHHHHcCCh
Q 012126 179 RNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVM--PD----VESYRILMQGLCRKSQV 252 (470)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~----~~~~~~ll~~~~~~~~~ 252 (470)
.|++++|...|++..+.. .+...+..+..++...|++++|.+.+++..+.... ++ ..++..+..++...|++
T Consensus 18 ~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 95 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDL 95 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccH
Confidence 344555555555555444 35566777777777777777777777776654221 11 46677777777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhc
Q 012126 253 NRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDM 332 (470)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 332 (470)
++|++.|+++.+.. |+ ...+.+.|++++|...++.+.... +.+...+..+...+...|++++|...++++
T Consensus 96 ~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 165 (258)
T 3uq3_A 96 KKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEM 165 (258)
T ss_dssp HHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 77777777777643 23 234556677788888888777652 224556777777788888888888888887
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 012126 333 PSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKA 405 (470)
Q Consensus 333 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (470)
.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|.+.+++..+.
T Consensus 166 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 166 IKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 7653 2356777778888888888888888888887753 345677888888888888888888888887663
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=2.3e-13 Score=119.31 Aligned_cols=201 Identities=13% Similarity=0.052 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 012126 201 TKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNS 280 (470)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 280 (470)
...+..+...+...|++++|.+.|+++.+.... +..++..+..++...|++++|++.++++.+.... +...+..+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 455666666777777777777777776665322 5566666666677777777777777666655332 45556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHH
Q 012126 281 LCRKKKLREAYKLLCRMKVKGCNP-DIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDV 359 (470)
Q Consensus 281 ~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 359 (470)
|...|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666665522222 33445555555666666666666666655432 1234455555555556666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 012126 360 AKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKA 405 (470)
Q Consensus 360 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (470)
|...++++.+.. +.+...+..+...+...|++++|.++++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666665555432 234445555555555556666666666555553
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=1.4e-14 Score=128.78 Aligned_cols=246 Identities=11% Similarity=-0.030 Sum_probs=178.4
Q ss_pred CCChhhHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Q 012126 179 RNYLRPAFDLFKSAHKHGVL---PNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRA 255 (470)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 255 (470)
.+++++|+..|+++.+.... .+...+..+...+...|++++|...|++..+.... +..++..+..++...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHH
Confidence 35577788888887765321 14567788888888999999999999888877543 678888888889999999999
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhC
Q 012126 256 VDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSN 335 (470)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 335 (470)
++.|+++.+.... +..++..+..+|.+.|++++|...++++.+. .|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999988876543 5678888888888999999999999988876 344444444555566778899999998777664
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 012126 336 GCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFS---PHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHED 412 (470)
Q Consensus 336 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 412 (470)
. +++...+. ++..+...++.++|...+.+..+.... .+..++..+...|...|++++|...|++.++.. |+.
T Consensus 174 ~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~- 248 (275)
T 1xnf_A 174 S-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN- 248 (275)
T ss_dssp S-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT-
T ss_pred C-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh-
Confidence 2 33434443 666777778888888888887654211 114677888888999999999999999988754 422
Q ss_pred HHHHHHHHHHcCCcHHHHHHHH
Q 012126 413 TWVMIVPQICAGEEMEKLGEVL 434 (470)
Q Consensus 413 ~~~~l~~~~~~~g~~~~a~~~~ 434 (470)
+.....++...|++++|++.+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 233355667778888887766
No 44
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.63 E-value=2.7e-12 Score=131.67 Aligned_cols=316 Identities=11% Similarity=0.077 Sum_probs=232.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 012126 63 CRVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAE 142 (470)
Q Consensus 63 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 142 (470)
..++.++...|.+++|..+|+... ......+.++. ..+++++|.++.++. .++.+|..+..++..
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHh
Confidence 446777788888999999988763 12223333332 667788888888755 257788999999999
Q ss_pred cCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 012126 143 SNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYT 222 (470)
Q Consensus 143 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 222 (470)
.|++++|++.|.+. -|...|..+...+. ..|++++|.+.|...++.. ++....+.++.+|++.+++++...
T Consensus 1118 ~G~~kEAIdsYiKA------dD~say~eVa~~~~-~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~ 1188 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA------DDPSSYMEVVQAAN-TSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEE 1188 (1630)
T ss_pred CCCHHHHHHHHHhc------CChHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHH
Confidence 99999999998664 34556666555554 6677999999998877755 333333458888888888885433
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 012126 223 LFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGC 302 (470)
Q Consensus 223 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 302 (470)
. ++ .++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++..
T Consensus 1189 f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~---- 1248 (1630)
T 1xi4_A 1189 F----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN---- 1248 (1630)
T ss_pred H----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC----
Confidence 3 22 235567777888999999999999999884 378889999999999999999998763
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012126 303 NPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHAL 382 (470)
Q Consensus 303 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 382 (470)
+..+|..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++..+... +-....|+-+
T Consensus 1249 --n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftEL 1320 (1630)
T 1xi4_A 1249 --STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 1320 (1630)
T ss_pred --CHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHH
Confidence 67889989999999999998888766432 356677789999999999999999998887654 3344566666
Q ss_pred HHHHHcc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHcCCcHHHHHH
Q 012126 383 IKGFCNV--GKVDEACGVLEELLKAGEAP------HEDTWVMIVPQICAGEEMEKLGE 432 (470)
Q Consensus 383 i~~~~~~--g~~~~a~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~ 432 (470)
...|++. ++..++.++|..-.. +++ +...|.-++-.|.+.|+++.|..
T Consensus 1321 aiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 6666654 455555555553322 222 46689999999999999999984
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=2.9e-13 Score=118.70 Aligned_cols=206 Identities=11% Similarity=0.012 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012126 236 VESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLG 315 (470)
Q Consensus 236 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 315 (470)
...+..+...+...|++++|++.|+++.+.... +..++..+..+|...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 567788889999999999999999999887543 67889999999999999999999999998774 3367888999999
Q ss_pred HHhcCCHhHHHHHHHhchhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 012126 316 FCREGRAIDACKVLEDMPSNGCLP-NLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDE 394 (470)
Q Consensus 316 ~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 394 (470)
|...|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998743345 46678888899999999999999999998864 4467889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHccccCCce
Q 012126 395 ACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVEIKGDTR 447 (470)
Q Consensus 395 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 447 (470)
|...++++.+.. +.+...+..+...+...|++++|.++++++.+.. |+..
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~ 243 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY--PGSL 243 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCCH
Confidence 999999998764 3467788899999999999999999999998653 5443
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=1.5e-12 Score=115.63 Aligned_cols=178 Identities=9% Similarity=-0.041 Sum_probs=77.2
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cC
Q 012126 214 NGDISIAYTLFNKMFERGVMPDVESYRILMQGLCR----KSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCR----KK 285 (470)
Q Consensus 214 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~ 285 (470)
.+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+
T Consensus 55 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCccc
Confidence 444444444444443332 33333344444444 444444444444444332 33334444444444 44
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHh----cCCh
Q 012126 286 KLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCR----EGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCD----QGMF 357 (470)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~ 357 (470)
++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++
T Consensus 129 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~ 202 (273)
T 1ouv_A 129 DFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNF 202 (273)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCH
T ss_pred CHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccH
Confidence 4444444444444432 23333334444443 444444444444444432 23344444444444 4555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCC
Q 012126 358 DVAKKYMQLMISKGFSPHFSVSHALIKGFCN----VGKVDEACGVLEELLKAG 406 (470)
Q Consensus 358 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 406 (470)
++|...+++..+.+ +...+..+..+|.. .+++++|.+.|++..+.|
T Consensus 203 ~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 203 KEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 55555555544432 13344444444444 455555555555554443
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=4.9e-13 Score=114.82 Aligned_cols=202 Identities=10% Similarity=-0.026 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLN 279 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 279 (470)
+...+..+...+...|++++|.+.|+++.+.... +...+..+...+...|++++|.+.++++.+.... +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 3445556666666666666666666666654322 4555666666666666666666666666554322 4455555566
Q ss_pred HHHhc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCh
Q 012126 280 SLCRK-KKLREAYKLLCRMKVKGCNPD-IVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMF 357 (470)
Q Consensus 280 ~~~~~-~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 357 (470)
.+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 66666 666666666666555211222 3445555555555555555555555555432 12344455555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 012126 358 DVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 358 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (470)
++|...++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 55555555555432113344444444555555555555555555543
No 48
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=5.5e-13 Score=127.44 Aligned_cols=349 Identities=10% Similarity=0.006 Sum_probs=170.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCc---hHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 012126 63 CRVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYF---SLIDDILITLKSEHYPVTPSLFTYLIKI 139 (470)
Q Consensus 63 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~ 139 (470)
..+.......|++++|++.|+.+...++ ...+..+...+...|+. ++|..+|++..+. ++..+..|...
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~----~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~ 78 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELGY----SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC----CTGGGTCC--------------------------------CHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHH
Confidence 4566777788889999998888765432 22333444445556666 8888888877643 55566666665
Q ss_pred HHHcC-----CchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012126 140 YAESN-----LPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRN--YLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFC 212 (470)
Q Consensus 140 ~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 212 (470)
+...+ ++++|+..|++..+.|... .+..+-..+....+ .-..+.+.+......| +...+..|...|.
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYR 152 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 55544 6678888888887765332 22222222222111 0133444444444433 2334455555555
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----C
Q 012126 213 FNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKS---QVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRK----K 285 (470)
Q Consensus 213 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~ 285 (470)
..+.++++......+.+.-...+...+..+...|...| +.++|++.|++..+.|.. +...+..|..+|... +
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSC
T ss_pred cCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCC
Confidence 55544443333222222111112235555666666666 666666666666665533 343334455555433 4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC-----Ch
Q 012126 286 KLREAYKLLCRMKVKGCNPDIVHYNTVVLG-F--CREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQG-----MF 357 (470)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~ 357 (470)
+.++|...|++.. .| +...+..+... | ...+++++|+..|++..+.| +...+..|...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 6666666666655 32 34444444444 2 34566666666666666554 4445555555554 33 66
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCcHHH
Q 012126 358 DVAKKYMQLMISKGFSPHFSVSHALIKGFCN----VGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICA----GEEMEK 429 (470)
Q Consensus 358 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 429 (470)
++|..+|++.. . .+...+..|...|.. ..++++|..+|++..+.| +......|...|.. ..+.++
T Consensus 304 ~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHH
Confidence 66666666655 2 244455555555544 236666666666666554 23334444444442 345666
Q ss_pred HHHHHHHHHHcc
Q 012126 430 LGEVLNEIVKVE 441 (470)
Q Consensus 430 a~~~~~~m~~~~ 441 (470)
|...++...+.|
T Consensus 377 A~~~~~~A~~~g 388 (452)
T 3e4b_A 377 AYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHCC
Confidence 666666665554
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=7.5e-13 Score=113.65 Aligned_cols=209 Identities=12% Similarity=0.030 Sum_probs=177.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012126 235 DVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVL 314 (470)
Q Consensus 235 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 314 (470)
+...+..+...+...|++++|++.++++.+.... +...+..+..+|...|++++|.+.+++..+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 5677888899999999999999999999886543 67889999999999999999999999998763 346788899999
Q ss_pred HHHhc-CCHhHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 012126 315 GFCRE-GRAIDACKVLEDMPSNGCLPN-LVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKV 392 (470)
Q Consensus 315 ~~~~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 392 (470)
.+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999988433343 5778888999999999999999999998863 44578899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHccccCCcee
Q 012126 393 DEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVEIKGDTRI 448 (470)
Q Consensus 393 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 448 (470)
++|...++++.+.....+...+..+...+...|+.+++..+++.+.+. .|+...
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~ 217 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEE 217 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHH
Confidence 999999999988643247778888888889999999999999999854 355443
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.60 E-value=4.6e-14 Score=122.99 Aligned_cols=201 Identities=14% Similarity=0.072 Sum_probs=104.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLN 279 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 279 (470)
....|..+...+...|++++|..+|+++.+.... +...+..+...+...|++++|++.++++.+.... +..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHH
Confidence 3445566666666677777777777766654332 5566666666666667777777766666655332 4555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHH
Q 012126 280 SLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDV 359 (470)
Q Consensus 280 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 359 (470)
.+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666665542 2244555555566666666666666666655432 2234455555555555666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 012126 360 AKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKA 405 (470)
Q Consensus 360 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (470)
|...++++.+.. +.+..++..+..+|...|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666665555542 233445555555555555555555555555553
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=4.3e-13 Score=124.36 Aligned_cols=230 Identities=10% Similarity=0.077 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 012126 130 PSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNY-LRPAFDLFKSAHKHGVLPNTKSYNIMM 208 (470)
Q Consensus 130 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 208 (470)
..+|..+..++...|++++|++.|++++. ..|+.......+..++...|+ +++|+..|+++++.... +...|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~--l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 34455555555556666666666665555 223332222222222223332 55555555555544332 555666666
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-cCCH
Q 012126 209 RAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCR-KKKL 287 (470)
Q Consensus 209 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~ 287 (470)
.++...|++++|+..|+++++.... +...|..+..++...|++++|+..++++++..+. +...|+.+..++.+ .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 6666666666666666666665443 5566666666666666666666666666665443 55566666666665 3443
Q ss_pred HHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC-----
Q 012126 288 REA-----YKLLCRMKVKGCNPDIVHYNTVVLGFCREG--RAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQG----- 355 (470)
Q Consensus 288 ~~a-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----- 355 (470)
++| +..+++..... +-+...|+.+...+...| ++++|++.+.++ +. ...+...+..+...|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 444 35555555442 223445555555555555 455666655555 21 1223445555555555542
Q ss_pred ----ChHHHHHHHHHH
Q 012126 356 ----MFDVAKKYMQLM 367 (470)
Q Consensus 356 ----~~~~a~~~~~~~ 367 (470)
..++|.++++++
T Consensus 329 ~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 329 NKEDILNKALELCEIL 344 (382)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 135566666655
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.60 E-value=1.2e-13 Score=120.24 Aligned_cols=201 Identities=15% Similarity=0.118 Sum_probs=130.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012126 235 DVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVL 314 (470)
Q Consensus 235 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 314 (470)
....|..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4556666777777778888888888777765433 56677777777777888888888887776653 335667777777
Q ss_pred HHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 012126 315 GFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDE 394 (470)
Q Consensus 315 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 394 (470)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 7778888888888887776653 2356667777777778888888888887777653 3456677777777778888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 012126 395 ACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 395 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 440 (470)
|.+.++++.+.. +.+..+|..+..+|...|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 888887776653 235667777777778888888888888877753
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=5.6e-13 Score=123.57 Aligned_cols=248 Identities=9% Similarity=0.001 Sum_probs=199.0
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-chhHHHHHHHHHhCCCccCHHHHHHHHH
Q 012126 95 NSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNL-PDRALKTFRSMLEFNCKPLPKQLNRILE 173 (470)
Q Consensus 95 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 173 (470)
...|..+...+.+.|++++|...++.++... |.+..+|+.+..++...|+ +++|+..|++++.. .|+.......+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHH
Confidence 4567788888889999999999999998876 6788999999999999997 99999999999884 465554444555
Q ss_pred HHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCh
Q 012126 174 LLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCR-KSQV 252 (470)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~ 252 (470)
.++...|++++|+..|+++++.... +...|..+..++...|++++|+..|+++++.... +...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 5555677899999999999987654 8899999999999999999999999999998655 78899999999999 6665
Q ss_pred HHH-----HHHHHHHHhCCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----
Q 012126 253 NRA-----VDLLEDMLNKGFVPDTLSYTTLLNSLCRKK--KLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREG----- 320 (470)
Q Consensus 253 ~~a-----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----- 320 (470)
++| ++.+++.+..... +...|..+..++...| ++++|.+.+.++ +. .+.+...+..+...|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 777 5888888887654 6788888888888888 689999999888 33 3446778888999998874
Q ss_pred ----CHhHHHHHHHhc-hhCCCCCC-HHHHHHHHHHHH
Q 012126 321 ----RAIDACKVLEDM-PSNGCLPN-LVSYRTLVGGLC 352 (470)
Q Consensus 321 ----~~~~a~~~~~~m-~~~~~~p~-~~~~~~li~~~~ 352 (470)
..++|+++++++ .+. .|. ...|..+...+.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 358999999998 553 344 345555554443
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=1.2e-13 Score=122.79 Aligned_cols=209 Identities=13% Similarity=0.016 Sum_probs=119.1
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 012126 181 YLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLE 260 (470)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 260 (470)
++++|...|+++.+... .+...|..+...|...|++++|.+.|++..+.... +..++..+..+|...|++++|+..++
T Consensus 58 ~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~ 135 (275)
T 1xnf_A 58 LRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLL 135 (275)
T ss_dssp CHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHH
Confidence 34444444444443322 24566666667777777777777777776665332 45666667777777777777777777
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCC-
Q 012126 261 DMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLP- 339 (470)
Q Consensus 261 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p- 339 (470)
++.+.. |+.......+..+...|++++|...+++..... +++...+ .++..+...++.++|+..+....+.....
T Consensus 136 ~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 211 (275)
T 1xnf_A 136 AFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLA 211 (275)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccccccc
Confidence 766643 222233334444455677777777776665542 2233333 35555666666677777777665532110
Q ss_pred --CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 012126 340 --NLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVL 399 (470)
Q Consensus 340 --~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 399 (470)
+...+..+...+...|++++|...++++.+.. |+. +.....++...|++++|.+.+
T Consensus 212 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 212 EHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 13566667777777777777777777777643 321 222344555667777766654
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=6.8e-13 Score=117.75 Aligned_cols=200 Identities=11% Similarity=0.041 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 012126 203 SYNIMMRAFCFNGDISIAYTLFNKMFERGVMP--DVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNS 280 (470)
Q Consensus 203 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 280 (470)
.+..+...|...|++++|.+.+++..+.+..+ ...+|..+...+...|++++|++.|++..+.... +..++..+..+
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~ 117 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSY 117 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHH
Confidence 34444444445555555555555444421111 1222444444555555555555555554443322 33444455555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC---h
Q 012126 281 LCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGM---F 357 (470)
Q Consensus 281 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~ 357 (470)
|...|++++|...+++..+.. +.+...|..+...+...+++++|...|+++.+.. +.+...+..+...+...|+ +
T Consensus 118 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~ 195 (272)
T 3u4t_A 118 FYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQ 195 (272)
T ss_dssp HHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSS
T ss_pred HHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhh
Confidence 555555555555555544431 2233344444412222335555555555554432 1123444444445544454 5
Q ss_pred HHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 012126 358 DVAKKYMQLMISKG-FSPH------FSVSHALIKGFCNVGKVDEACGVLEELLKA 405 (470)
Q Consensus 358 ~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (470)
++|...++++.+.. -.|+ ..+|..+...|...|++++|.+.|++.++.
T Consensus 196 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 196 GLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp CTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55555555544421 0111 134555556666666666666666666554
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=3.9e-13 Score=127.06 Aligned_cols=276 Identities=11% Similarity=0.012 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012126 132 LFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAF 211 (470)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 211 (470)
.+..+...+...|++++|+..|+++.+.+ |+.... -...+..+...|
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~-------------------------------~~~~~~~lg~~~ 96 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRT-------------------------------LSAIYSQLGNAY 96 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHH-------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhH-------------------------------HHHHHHHHHHHH
Confidence 34445566667777777777777666532 221100 012344444444
Q ss_pred HhcCChhHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC----C-CCCCHhhHHHHHHHH
Q 012126 212 CFNGDISIAYTLFNKMFER----G-VMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNK----G-FVPDTLSYTTLLNSL 281 (470)
Q Consensus 212 ~~~g~~~~a~~~~~~m~~~----~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ll~~~ 281 (470)
...|++++|...|++..+. + ......++..+...|...|++++|+..+++..+. + ......++..+...|
T Consensus 97 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 97 FYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVY 176 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 4555555555555444322 0 0112234444445555555555555555544332 0 011223444555555
Q ss_pred HhcCC-----------------HHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCC-
Q 012126 282 CRKKK-----------------LREAYKLLCRMKVK----GC-NPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCL- 338 (470)
Q Consensus 282 ~~~~~-----------------~~~a~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~- 338 (470)
...|+ +++|.+.+++..+. +. ......+..+...|...|++++|+..+++..+....
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 55555 55555555554321 10 111235555666666677777777666665442100
Q ss_pred CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC---
Q 012126 339 PN----LVSYRTLVGGLCDQGMFDVAKKYMQLMISKG--FS---PHFSVSHALIKGFCNVGKVDEACGVLEELLKAG--- 406 (470)
Q Consensus 339 p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--- 406 (470)
++ ...+..+...+...|++++|...+++..+.. .. ....++..+...|...|++++|...+++.++..
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 11 2256666677777777777777777665421 00 113466667777777788888877777765421
Q ss_pred -C-CCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 012126 407 -E-APHEDTWVMIVPQICAGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 407 -~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 440 (470)
. .....++..+...|...|++++|.+.+++.++.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 0 011336667777777888888888888777654
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.51 E-value=4e-11 Score=108.52 Aligned_cols=217 Identities=12% Similarity=0.036 Sum_probs=128.7
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------HcCCh-------HHHHHHHHHHHh-CCCCCCHhhHHHHHHHHH
Q 012126 218 SIAYTLFNKMFERGVMPDVESYRILMQGLC-------RKSQV-------NRAVDLLEDMLN-KGFVPDTLSYTTLLNSLC 282 (470)
Q Consensus 218 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~ 282 (470)
++|..+|++.+..... +...|..++..+. ..|++ ++|..+|++.++ .... +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 4555566665554322 4555555555443 23554 666666666665 2322 4456666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHH-hcCChHH
Q 012126 283 RKKKLREAYKLLCRMKVKGCNPD-IV-HYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLC-DQGMFDV 359 (470)
Q Consensus 283 ~~~~~~~a~~~~~~m~~~~~~~~-~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~ 359 (470)
+.|++++|..+|++..+. .|+ .. .|..++..+.+.|++++|..+|++..+.+ +.+...|........ ..|+.++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 667777777777766654 333 22 56666666666777777777777766543 123333333322211 2577777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 012126 360 AKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAG-EAP--HEDTWVMIVPQICAGEEMEKLGEVLNE 436 (470)
Q Consensus 360 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~ 436 (470)
|..+|++.++.. +-+...|..++..+.+.|++++|..+|++.++.. +.| ....|..++..+.+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777766642 3355666777777777777777777777776642 233 345666667766677777777777777
Q ss_pred HHHc
Q 012126 437 IVKV 440 (470)
Q Consensus 437 m~~~ 440 (470)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=5.4e-13 Score=126.10 Aligned_cols=273 Identities=14% Similarity=0.026 Sum_probs=141.4
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCCchhHHHHHHHHHhC----CCccCHHHH
Q 012126 97 TYLILILKLGRAKYFSLIDDILITLKSEHYPVTP----SLFTYLIKIYAESNLPDRALKTFRSMLEF----NCKPLPKQL 168 (470)
Q Consensus 97 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~ 168 (470)
.+..+...+...|++++|...++.+.+.. +.+. .++..+...|...|++++|++.|++..+. +..|.
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---- 124 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG---- 124 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH----
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH----
Confidence 34445556667777777777777776653 3333 35666777777777777777777765541 10111
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----C-CCCCHHHHHHHH
Q 012126 169 NRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFER----G-VMPDVESYRILM 243 (470)
Q Consensus 169 ~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~p~~~~~~~ll 243 (470)
....+..+...|...|++++|...|++..+. + ......++..+.
T Consensus 125 -------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 173 (411)
T 4a1s_A 125 -------------------------------EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLG 173 (411)
T ss_dssp -------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 1223333344444444444444444433321 0 001123344444
Q ss_pred HHHHHcCC-----------------hHHHHHHHHHHHhC----CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 012126 244 QGLCRKSQ-----------------VNRAVDLLEDMLNK----GF-VPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKG 301 (470)
Q Consensus 244 ~~~~~~~~-----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 301 (470)
..|...|+ +++|++.+++..+. +. .....++..+...|...|++++|...+++..+..
T Consensus 174 ~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (411)
T 4a1s_A 174 NVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA 253 (411)
T ss_dssp HHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 44444444 44444444443221 10 1112344555555555566666655555544321
Q ss_pred CC-CC----HHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-
Q 012126 302 CN-PD----IVHYNTVVLGFCREGRAIDACKVLEDMPSNGCL-----PNLVSYRTLVGGLCDQGMFDVAKKYMQLMISK- 370 (470)
Q Consensus 302 ~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~- 370 (470)
.. .+ ...+..+...|...|++++|...+++..+.... ....++..+...+...|++++|...+++..+.
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 00 01 124555566666666666666666655432100 01345566666677777777777777766542
Q ss_pred ---CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 012126 371 ---GF-SPHFSVSHALIKGFCNVGKVDEACGVLEELLKA 405 (470)
Q Consensus 371 ---~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (470)
+. .....++..+...|...|++++|.+.+++..+.
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 10 011336666777777788888888888777663
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.51 E-value=8e-13 Score=124.50 Aligned_cols=63 Identities=11% Similarity=-0.044 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 012126 94 SNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVT----PSLFTYLIKIYAESNLPDRALKTFRSML 157 (470)
Q Consensus 94 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 157 (470)
....+......+...|++++|...++.+.... +.+ ..++..+...|...|++++|+..|++..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 74 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 74 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34445555556666666666666666665543 223 2345556666666666666666666544
No 60
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.51 E-value=1.1e-12 Score=125.37 Aligned_cols=317 Identities=15% Similarity=0.047 Sum_probs=212.8
Q ss_pred HHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCc---hhHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 012126 100 ILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLP---DRALKTFRSMLEFNCKPLPKQLNRILELLV 176 (470)
Q Consensus 100 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 176 (470)
.+...+.+.|++++|.++|....+.+ ++..+..|...|...|+. ++|++.|++..+. +...+..+-..+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35667788899999999999998776 445566777778888888 8999999998764 3333333333243
Q ss_pred hcC----CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 012126 177 THR----NYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDIS---IAYTLFNKMFERGVMPDVESYRILMQGLCRK 249 (470)
Q Consensus 177 ~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 249 (470)
... ++.++|...|++..+.|.. + .+..|...|...+..+ ++.+.+....+.| +...+..+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 333 3678999999999997743 2 6667777777666543 4556666665555 345667788888888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCH
Q 012126 250 SQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKK---KLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCRE----GRA 322 (470)
Q Consensus 250 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----~~~ 322 (470)
+.++++......+.+.-...+...+..|..+|.+.| +.++|.+.|++..+.| .++...+..+...|... +++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCH
Confidence 865554444333322212223448888999999999 9999999999999887 44555556677777554 799
Q ss_pred hHHHHHHHhchhCCCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-----CHHH
Q 012126 323 IDACKVLEDMPSNGCLPNLVSYRTLVGG-L--CDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVG-----KVDE 394 (470)
Q Consensus 323 ~~a~~~~~~m~~~~~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~ 394 (470)
++|+..|+... .| +...+..+... + ...+++++|..+|++..+.| +...+..+...|. .| ++++
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 99999999987 43 55566666665 3 46899999999999999876 6677777887777 55 9999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCcHHHHHHHHHHHHHccc
Q 012126 395 ACGVLEELLKAGEAPHEDTWVMIVPQICA----GEEMEKLGEVLNEIVKVEI 442 (470)
Q Consensus 395 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 442 (470)
|.+.|++.. . -+...+..|...|.. ..++++|.+.|++..+.|.
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 999999987 4 377888888887776 4499999999999987653
No 61
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.50 E-value=3.6e-12 Score=119.30 Aligned_cols=231 Identities=11% Similarity=-0.047 Sum_probs=173.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC------CCHhhHH
Q 012126 207 MMRAFCFNGDISIAYTLFNKMFER----GVMP-DVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFV------PDTLSYT 275 (470)
Q Consensus 207 li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 275 (470)
....+...|++++|...|++..+. +-.+ ...++..+...|...|++++|+..+.+..+.... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556778899999999999998764 1111 3467888889999999999999999887753111 1235778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHhchhC----CC-CCCHHHHH
Q 012126 276 TLLNSLCRKKKLREAYKLLCRMKVK----GCNP-DIVHYNTVVLGFCREGRAIDACKVLEDMPSN----GC-LPNLVSYR 345 (470)
Q Consensus 276 ~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~ 345 (470)
.+..+|...|++++|...+++..+. +..+ ...++..+...|...|++++|+..+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888999999999999999887653 1111 1247888899999999999999999987762 22 23456788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 012126 346 TLVGGLCDQGMFDVAKKYMQLMISK----GFSPHFSVSHALIKGFCNVGK---VDEACGVLEELLKAGEAPH-EDTWVMI 417 (470)
Q Consensus 346 ~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~l 417 (470)
.+...+...|++++|...+++..+. +-+.....+..+...|...|+ +++|..++++. +..++ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8899999999999999999988763 111122345677788899999 77777777765 22222 3467788
Q ss_pred HHHHHcCCcHHHHHHHHHHHHHc
Q 012126 418 VPQICAGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 418 ~~~~~~~g~~~~a~~~~~~m~~~ 440 (470)
...|...|++++|.+.+++..+.
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999764
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=1.1e-12 Score=123.43 Aligned_cols=275 Identities=13% Similarity=0.028 Sum_probs=151.1
Q ss_pred CCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCH----HHHHHHHHHHHhcCCChhhHHHHHHHHHHC----CCCC
Q 012126 128 VTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLP----KQLNRILELLVTHRNYLRPAFDLFKSAHKH----GVLP 199 (470)
Q Consensus 128 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 199 (470)
.....+......+...|++++|+..|++..+.+ |+. ......+..++...|++++|...+++.... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 445566677788888888888888888887743 321 112223333444556677777777765532 1111
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCC--------------------hH
Q 012126 200 -NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVM-PD----VESYRILMQGLCRKSQ--------------------VN 253 (470)
Q Consensus 200 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~--------------------~~ 253 (470)
...++..+...|...|++++|...+++..+.... .+ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2345666667777777777777777766543100 01 3356666666777777 66
Q ss_pred HHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHh
Q 012126 254 RAVDLLEDMLNK----GFVP-DTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGC-NPD----IVHYNTVVLGFCREGRAI 323 (470)
Q Consensus 254 ~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~~~~~ 323 (470)
+|++.+.+..+. +..+ ...++..+...|...|++++|...+++..+... .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 666666665432 1111 123455566666666666666666666543210 011 124555556666666666
Q ss_pred HHHHHHHhchhCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHH
Q 012126 324 DACKVLEDMPSNGCL-PN----LVSYRTLVGGLCDQGMFDVAKKYMQLMISKGF-SPH----FSVSHALIKGFCNVGKVD 393 (470)
Q Consensus 324 ~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~ 393 (470)
+|...+++..+.... .+ ..++..+...+...|++++|...+++..+... ..+ ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 666666655432100 11 33455555566666666666666665554210 011 334555555566666666
Q ss_pred HHHHHHHHHHH
Q 012126 394 EACGVLEELLK 404 (470)
Q Consensus 394 ~a~~~~~~~~~ 404 (470)
+|.+.+++..+
T Consensus 325 ~A~~~~~~al~ 335 (406)
T 3sf4_A 325 QAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666555
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=1.3e-12 Score=119.39 Aligned_cols=239 Identities=13% Similarity=0.041 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-CC----H
Q 012126 202 KSYNIMMRAFCFNGDISIAYTLFNKMFER----GVM-PDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFV-PD----T 271 (470)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~ 271 (470)
..+..+...+...|++++|.+.+++..+. +.. ....++..+...+...|++++|...+++..+.... .+ .
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 123 (338)
T 3ro2_A 44 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHH
Confidence 44555566666666666666666654332 111 12345555666666667777776666665432110 11 2
Q ss_pred hhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHhHHH
Q 012126 272 LSYTTLLNSLCRKKK--------------------LREAYKLLCRMKVK----GCN-PDIVHYNTVVLGFCREGRAIDAC 326 (470)
Q Consensus 272 ~~~~~ll~~~~~~~~--------------------~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~ 326 (470)
.++..+...|...|+ +++|...+++.... +.. .....+..+...+...|++++|.
T Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 203 (338)
T 3ro2_A 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 203 (338)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 355566666666666 77777766665332 111 11345666777778888888888
Q ss_pred HHHHhchhCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHH
Q 012126 327 KVLEDMPSNGC-LPN----LVSYRTLVGGLCDQGMFDVAKKYMQLMISKGF-SPH----FSVSHALIKGFCNVGKVDEAC 396 (470)
Q Consensus 327 ~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~a~ 396 (470)
..+++..+... .++ ..++..+...+...|++++|...+++..+... ..+ ..++..+...|...|++++|.
T Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (338)
T 3ro2_A 204 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 283 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHH
Confidence 88877654210 011 23667777788888888888888887765310 111 456777888888999999999
Q ss_pred HHHHHHHHC----CC-CCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 012126 397 GVLEELLKA----GE-APHEDTWVMIVPQICAGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 397 ~~~~~~~~~----~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 440 (470)
..+++..+. +. .....++..+...|.+.|++++|.+.++++.+.
T Consensus 284 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 284 DYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 998887653 11 011346778888889999999999999998864
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=1.6e-12 Score=118.76 Aligned_cols=276 Identities=14% Similarity=0.045 Sum_probs=153.0
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHH
Q 012126 98 YLILILKLGRAKYFSLIDDILITLKSEHYPVT----PSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILE 173 (470)
Q Consensus 98 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 173 (470)
+......+...|++++|...++.+.+.. +.+ ..++..+...|...|++++|++.+++......
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------ 74 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR------------ 74 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh------------
Confidence 3344555666677777777777666553 223 24556666677777777777777666543100
Q ss_pred HHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHH
Q 012126 174 LLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVM-PD----VESYRILMQGLCR 248 (470)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~ 248 (470)
..++ .......+..+...+...|++++|...+++..+.... .+ ..++..+...+..
T Consensus 75 ----~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 75 ----TIGD---------------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp ----HHTC---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----cccc---------------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 0000 0001233444555555555555555555554332100 01 2244555555555
Q ss_pred cCC--------------------hHHHHHHHHHHHhC----CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 012126 249 KSQ--------------------VNRAVDLLEDMLNK----GF-VPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVK--- 300 (470)
Q Consensus 249 ~~~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--- 300 (470)
.|+ +++|.+.+++.... +. .....++..+...+...|++++|...+++..+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 555 56665555554321 11 111335555666666667777777666665432
Q ss_pred -CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC---
Q 012126 301 -GC-NPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCL-PN----LVSYRTLVGGLCDQGMFDVAKKYMQLMISK--- 370 (470)
Q Consensus 301 -~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--- 370 (470)
+. .....++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..+.
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 10 001235666667777777777777777765432100 11 445666777777888888888888776653
Q ss_pred -CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 012126 371 -GFS-PHFSVSHALIKGFCNVGKVDEACGVLEELLKA 405 (470)
Q Consensus 371 -~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (470)
+.. ....++..+...|...|++++|...+++..+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 111 11346667778888888888888888887764
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.46 E-value=5.9e-11 Score=107.39 Aligned_cols=219 Identities=10% Similarity=0.031 Sum_probs=151.3
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCh-------hHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 012126 183 RPAFDLFKSAHKHGVLPNTKSYNIMMRAFC-------FNGDI-------SIAYTLFNKMFER-GVMPDVESYRILMQGLC 247 (470)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~ 247 (470)
++|..+|++...... -+...|..++..+. ..|++ ++|..+|++.++. .. -+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 455666666665432 25666666666554 34665 7888888887763 32 25567777888888
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHhHH
Q 012126 248 RKSQVNRAVDLLEDMLNKGFVPDTL-SYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFC-REGRAIDA 325 (470)
Q Consensus 248 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~~~~~~a 325 (470)
..|++++|.++|+++.+.... +.. +|..+...+.+.|++++|..+|++..+.. +.+...|........ ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888775332 232 67777888888888888888888887653 223344433333222 36888888
Q ss_pred HHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 012126 326 CKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKG-FSP--HFSVSHALIKGFCNVGKVDEACGVLEEL 402 (470)
Q Consensus 326 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~ 402 (470)
..+|+...+.. +-+...|..++..+.+.|++++|..+|++.++.. +.| ....|..++..+.+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888877642 2356777788888888888888888888888852 344 4667888888888888888888888888
Q ss_pred HHCC
Q 012126 403 LKAG 406 (470)
Q Consensus 403 ~~~~ 406 (470)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7743
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=3.6e-12 Score=122.57 Aligned_cols=212 Identities=9% Similarity=-0.036 Sum_probs=145.3
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 012126 182 LRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDI-SIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLE 260 (470)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 260 (470)
++++...+++...... .+...+..+...+...|++ ++|++.|++..+.... +...|..+..+|...|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6677777776665432 3677778888888888888 8888888888776533 57778888888888888888888888
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCHh
Q 012126 261 DMLNKGFVPDTLSYTTLLNSLCRK---------KKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCRE--------GRAI 323 (470)
Q Consensus 261 ~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------~~~~ 323 (470)
+..+.. |+...+..+..+|... |++++|...+++..+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 887764 4567777777777777 77777777777777653 23466677777777766 6677
Q ss_pred HHHHHHHhchhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 012126 324 DACKVLEDMPSNGCL--PNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVL 399 (470)
Q Consensus 324 ~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 399 (470)
+|+..|++..+.... -+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777776664210 255666666666677777777777777666642 234455666666666666666666544
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.45 E-value=2.7e-11 Score=100.55 Aligned_cols=162 Identities=11% Similarity=0.009 Sum_probs=65.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 012126 273 SYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLC 352 (470)
Q Consensus 273 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 352 (470)
+|..+...|.+.|++++|+..|++..+.. +-+...+..+..+|.+.|++++|...+....... +-+...+..+...+.
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHH
Confidence 33334444444444444444444433331 1123333334444444444444444444433321 112233333333444
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHH
Q 012126 353 DQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGE 432 (470)
Q Consensus 353 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 432 (470)
..++++.|...+.+..+.. +.+...+..+..+|.+.|++++|.+.|++.++... .+..+|..+..+|.+.|++++|++
T Consensus 85 ~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHHHHH
Confidence 4444444444444444321 22333444444444444444444444444444321 133444444444444444444444
Q ss_pred HHHHHH
Q 012126 433 VLNEIV 438 (470)
Q Consensus 433 ~~~~m~ 438 (470)
.|++++
T Consensus 163 ~~~~al 168 (184)
T 3vtx_A 163 YFKKAL 168 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.45 E-value=9.7e-12 Score=116.36 Aligned_cols=297 Identities=8% Similarity=0.004 Sum_probs=194.9
Q ss_pred HHccCCchHHHHHHHHHhhC--CCCCCHH--HHHHHHHH--HHHcCCchhHH-----------HHHHHHHhCCCccCH--
Q 012126 105 LGRAKYFSLIDDILITLKSE--HYPVTPS--LFTYLIKI--YAESNLPDRAL-----------KTFRSMLEFNCKPLP-- 165 (470)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~--~~~~li~~--~~~~g~~~~A~-----------~~~~~~~~~~~~p~~-- 165 (470)
+.+.+++++|..+++++.+. ....+.. .|-.++.. ....+..+.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45667777777777776543 1112332 22222222 11223333333 555555431111010
Q ss_pred -HHHHHHHHHHHhcCCChhhHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC------C
Q 012126 166 -KQLNRILELLVTHRNYLRPAFDLFKSAHKH----GVLP-NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGV------M 233 (470)
Q Consensus 166 -~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------~ 233 (470)
..+......+....|++++|...|++..+. +..+ ...++..+...|...|++++|...+++..+... .
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 112223445555677889999999888763 1111 346788888999999999999999988765311 1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-C
Q 012126 234 PDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFV-PD----TLSYTTLLNSLCRKKKLREAYKLLCRMKVK----GC-N 303 (470)
Q Consensus 234 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~ 303 (470)
....+++.+..+|...|++++|++.+++..+.... .+ ..++..+..+|...|++++|...+++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 12457788889999999999999999887753111 11 247788889999999999999999988762 22 3
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHhchhC----CCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-
Q 012126 304 PDIVHYNTVVLGFCREGRAIDACKVLEDMPSN----GCLPNLVSYRTLVGGLCDQGM---FDVAKKYMQLMISKGFSPH- 375 (470)
Q Consensus 304 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~- 375 (470)
....++..+...|.+.|++++|...+++..+. +-+.....+..+...+...|+ .++|..++++. +..++
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~ 338 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADL 338 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHH
Confidence 34567888899999999999999999887653 111112335667777888888 66666666655 22222
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 012126 376 FSVSHALIKGFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (470)
...+..+...|...|++++|.+.|++..+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34677888999999999999999998865
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.44 E-value=2e-11 Score=101.27 Aligned_cols=166 Identities=13% Similarity=0.061 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 012126 129 TPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMM 208 (470)
Q Consensus 129 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 208 (470)
++.+|..+...|...|++++|++.|++.++. .|+.......+..++...|++++|...+......... +...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 3344444444555555555555555444431 1222222222222222223333333333333332211 333444444
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 012126 209 RAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLR 288 (470)
Q Consensus 209 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 288 (470)
..+...++++.+...+.+....... +...+..+..++.+.|++++|++.|++..+..+. +..++..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 4444445555555555444443222 3444444444455555555555555544443322 3444444444555555555
Q ss_pred HHHHHHHHHHH
Q 012126 289 EAYKLLCRMKV 299 (470)
Q Consensus 289 ~a~~~~~~m~~ 299 (470)
+|...|++..+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555554444
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=1.1e-12 Score=118.78 Aligned_cols=240 Identities=13% Similarity=0.059 Sum_probs=158.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC------C
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFER-------GVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNK------G 266 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 266 (470)
+..++..+...+...|++++|..+|+++.+. .......++..+...|...|++++|+..++++.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4566777888888888888888888887763 22234566777888888888888888888887653 2
Q ss_pred C-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHhchhC---
Q 012126 267 F-VPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVK------GCNP-DIVHYNTVVLGFCREGRAIDACKVLEDMPSN--- 335 (470)
Q Consensus 267 ~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 335 (470)
. .....++..+...|...|++++|...+++..+. +..| ....+..+...+...|++++|+.+++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 223556777888888888888888888887654 1112 3456777888888889999988888887653
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCC-------HHHHHHHHHHHHccCCHHHHHH
Q 012126 336 ---GCLP-NLVSYRTLVGGLCDQGMFDVAKKYMQLMISK-------GFSPH-------FSVSHALIKGFCNVGKVDEACG 397 (470)
Q Consensus 336 ---~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~-------~~~~~~li~~~~~~g~~~~a~~ 397 (470)
+..| ...++..+...+...|++++|...++++.+. ...+. ...+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 2456777888888899999999998888753 11111 1122223333444555666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 012126 398 VLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 398 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 440 (470)
.++...... ..+..+|..+..+|.+.|++++|.+++++.++.
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 666665432 224567888899999999999999999998754
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=8.7e-12 Score=119.89 Aligned_cols=217 Identities=9% Similarity=-0.074 Sum_probs=161.5
Q ss_pred chHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCc-hhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHH
Q 012126 111 FSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLP-DRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLF 189 (470)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~ 189 (470)
++++...++...... +.+...+..+...|...|++ ++|++.|++..+. .|+.......+..++...|++++|...|
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 556666666665543 45777788888888888888 8888888887763 3543333344444444666788888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CCh
Q 012126 190 KSAHKHGVLPNTKSYNIMMRAFCFN---------GDISIAYTLFNKMFERGVMPDVESYRILMQGLCRK--------SQV 252 (470)
Q Consensus 190 ~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--------~~~ 252 (470)
++..+.. |+...+..+...|... |++++|.+.|++..+.... +...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 8888765 5667788888888888 8888888888888877543 677888888888888 888
Q ss_pred HHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 012126 253 NRAVDLLEDMLNKGFV--PDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLE 330 (470)
Q Consensus 253 ~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 330 (470)
++|++.|++..+.... -+...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|++.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888876431 267788888888888889999988888887763 3345677788888888888888888777
Q ss_pred hchh
Q 012126 331 DMPS 334 (470)
Q Consensus 331 ~m~~ 334 (470)
.+..
T Consensus 317 ~~~~ 320 (474)
T 4abn_A 317 KTKP 320 (474)
T ss_dssp TCCH
T ss_pred cccC
Confidence 6643
No 72
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.42 E-value=6.2e-11 Score=110.65 Aligned_cols=231 Identities=9% Similarity=-0.057 Sum_probs=168.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-----CC-CHhhH
Q 012126 206 IMMRAFCFNGDISIAYTLFNKMFERGV-MP----DVESYRILMQGLCRKSQVNRAVDLLEDMLNKGF-----VP-DTLSY 274 (470)
Q Consensus 206 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~ 274 (470)
.....+...|++++|...|++..+... .+ ...++..+..+|...|+++.|+..+++..+... .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345566788999999999998875411 11 245677888889999999999999888765311 11 24567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHhchh-----CCCCCCHHHH
Q 012126 275 TTLLNSLCRKKKLREAYKLLCRMKVK----GCN-PDIVHYNTVVLGFCREGRAIDACKVLEDMPS-----NGCLPNLVSY 344 (470)
Q Consensus 275 ~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~ 344 (470)
+.+..+|...|++++|.+.+++..+. +.. ....++..+...|...|++++|+..+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 78888899999999999999887653 111 1235677888889999999999999998776 32 2236678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCCCCC-HHHHHH
Q 012126 345 RTLVGGLCDQGMFDVAKKYMQLMISKG----FSPHFSVSHALIKGFCNVGK---VDEACGVLEELLKAGEAPH-EDTWVM 416 (470)
Q Consensus 345 ~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~ 416 (470)
..+...+.+.|++++|...+++..+.. -+.....+..+...|...|+ +.+|...+++. +..++ ...+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 888899999999999999999988742 12223455666677778888 77777777662 22222 346677
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHc
Q 012126 417 IVPQICAGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 417 l~~~~~~~g~~~~a~~~~~~m~~~ 440 (470)
+...|...|++++|.+.++++.+.
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 888999999999999999988753
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.37 E-value=2.9e-12 Score=115.95 Aligned_cols=246 Identities=13% Similarity=0.079 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhC------CC
Q 012126 95 NSTYLILILKLGRAKYFSLIDDILITLKSE-------HYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEF------NC 161 (470)
Q Consensus 95 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~ 161 (470)
..++..+...+...|++++|..+++.+.+. ..+....++..+...|...|++++|+..|++.... +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445555566666666666666666665542 12334455666666777777777777766665542 11
Q ss_pred ccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----
Q 012126 162 KPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKH------GVLP-NTKSYNIMMRAFCFNGDISIAYTLFNKMFER---- 230 (470)
Q Consensus 162 ~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---- 230 (470)
.|........+..++...|++++|...+++..+. +..| ....+..+...+...|++++|.++|++..+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 1111111112222222333333333333333321 1011 2233444445555555555555555554432
Q ss_pred --CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012126 231 --GVMP-DVESYRILMQGLCRKSQVNRAVDLLEDMLNKG-------FVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 231 --~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 300 (470)
+..| ...++..+..+|...|++++|++.++++.+.. ..+.......
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------ 242 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------------ 242 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH------------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH------------------------
Confidence 1011 12334444445555555555555554444310 0000000000
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012126 301 GCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMIS 369 (470)
Q Consensus 301 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 369 (470)
....+..+...+...+.+.++...+....... ..+..++..+..+|...|++++|..++++..+
T Consensus 243 ----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 ----HAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----HHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11122233334445555556666666555421 22345566666777777777777777776654
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.36 E-value=1.2e-08 Score=101.02 Aligned_cols=375 Identities=11% Similarity=-0.013 Sum_probs=241.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCC---chHHHHHHHHHhhCC-CCCCHHHHHHHHH
Q 012126 63 CRVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKY---FSLIDDILITLKSEH-YPVTPSLFTYLIK 138 (470)
Q Consensus 63 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~~~li~ 138 (470)
..+.......++...+..+|+.+... ++.+...|...+..-.+.++ ++.+..+|++..... .+|+...|..-+.
T Consensus 70 ~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~ 147 (679)
T 4e6h_A 70 VKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYIT 147 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 34445556678888888999988765 35677788888888888888 999999999988764 1478888888777
Q ss_pred HHHHcCCc--------hhHHHHHHHHHh-CCC-ccC-HHHHHHHHHHHHh--------cCCChhhHHHHHHHHHHCCCCC
Q 012126 139 IYAESNLP--------DRALKTFRSMLE-FNC-KPL-PKQLNRILELLVT--------HRNYLRPAFDLFKSAHKHGVLP 199 (470)
Q Consensus 139 ~~~~~g~~--------~~A~~~~~~~~~-~~~-~p~-~~~~~~ll~~~~~--------~~~~~~~a~~~~~~~~~~~~~~ 199 (470)
...+.++. +...++|+..+. .|. .++ ...|...+..... ..+.++.+..+|++.+......
T Consensus 148 f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~ 227 (679)
T 4e6h_A 148 YVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDC 227 (679)
T ss_dssp HHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred HHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHH
Confidence 66665554 234467776553 455 453 4556555544321 1122455666666666432111
Q ss_pred CHHHHHH-------------------------------------------------------------------------
Q 012126 200 NTKSYNI------------------------------------------------------------------------- 206 (470)
Q Consensus 200 ~~~~~~~------------------------------------------------------------------------- 206 (470)
-..+|..
T Consensus 228 ~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~ 307 (679)
T 4e6h_A 228 LESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLE 307 (679)
T ss_dssp HHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHH
Confidence 1122211
Q ss_pred HHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHhCCCCCCHhhHHHHH
Q 012126 207 MMRAFCFNG-------DISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAV-DLLEDMLNKGFVPDTLSYTTLL 278 (470)
Q Consensus 207 li~~~~~~g-------~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll 278 (470)
.+..--..+ ..+.+..+|++.+... .-....|...+..+...|+.++|. ++|+...... +.+...|-..+
T Consensus 308 yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a 385 (679)
T 4e6h_A 308 WIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLS 385 (679)
T ss_dssp HHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 111000000 0111223344443332 124455555556666778888886 8998888643 33666677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHHhcCCHhHHHHHHHhchhCCC
Q 012126 279 NSLCRKKKLREAYKLLCRMKVKG---------CNPD------------IVHYNTVVLGFCREGRAIDACKVLEDMPSNGC 337 (470)
Q Consensus 279 ~~~~~~~~~~~a~~~~~~m~~~~---------~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 337 (470)
...-+.|+++.|..+|+.+.+.. ..|+ ...|...+....+.|..+.|..+|....+.-.
T Consensus 386 ~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~ 465 (679)
T 4e6h_A 386 EQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK 465 (679)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Confidence 88888999999999999887641 0131 23577777777888999999999999887511
Q ss_pred CCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHHHH
Q 012126 338 LPNLVSYRTLVGGLCDQ-GMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAP--HEDTW 414 (470)
Q Consensus 338 ~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~ 414 (470)
......|...+..-.+. ++.+.|.++|+..++. ++.+...+...+......|+.+.|..+|+..+.....+ ....|
T Consensus 466 ~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw 544 (679)
T 4e6h_A 466 LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIF 544 (679)
T ss_dssp GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 12233444333333333 4589999999998886 45567777888888888999999999999998764321 34578
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHccc
Q 012126 415 VMIVPQICAGEEMEKLGEVLNEIVKVEI 442 (470)
Q Consensus 415 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 442 (470)
...+..-.+.|+.+.+.++.+++.+...
T Consensus 545 ~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 545 QKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 8888888889999999999999987643
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.36 E-value=3.2e-10 Score=105.52 Aligned_cols=302 Identities=14% Similarity=0.094 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHH---HHHHHHHHHhcCCChhhHHHHHHHHHHCCCC-CCH----HH
Q 012126 132 LFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQ---LNRILELLVTHRNYLRPAFDLFKSAHKHGVL-PNT----KS 203 (470)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~ 203 (470)
+.......+...|++++|...+++........+... ....+..++...|++++|...+++....... .+. .+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 344556667788999999999998877442222221 1223334444667789999999887753211 122 33
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC----CHh
Q 012126 204 YNIMMRAFCFNGDISIAYTLFNKMFER----GVM--P-DVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVP----DTL 272 (470)
Q Consensus 204 ~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~ 272 (470)
+..+...+...|++++|...+++..+. +.. | ...++..+...+...|++++|...+++........ ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 566777888899999999998887653 221 2 23456667788888999999999998877643221 234
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH-----HHHHHHHhcCCHhHHHHHHHhchhCCCCCC---HHH
Q 012126 273 SYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPD-IVHYN-----TVVLGFCREGRAIDACKVLEDMPSNGCLPN---LVS 343 (470)
Q Consensus 273 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~ 343 (470)
++..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 567777888889999999999988765311111 11222 233447788999999999988876432211 224
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012126 344 YRTLVGGLCDQGMFDVAKKYMQLMISK----GFSPHF-SVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIV 418 (470)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 418 (470)
+..+...+...|++++|...++..... |..++. .++..+..++...|+.++|...+++..... +. ...+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~ 329 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFI 329 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHH
Confidence 566777888889999999988887653 222222 255666777888899999999988887742 11 1122
Q ss_pred HHHHcCCcHHHHHHHHHHHHHcc
Q 012126 419 PQICAGEEMEKLGEVLNEIVKVE 441 (470)
Q Consensus 419 ~~~~~~g~~~~a~~~~~~m~~~~ 441 (470)
..+...| +....+++.+...+
T Consensus 330 ~~~~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 330 SHFVIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp HHHHTTH--HHHHHHHHHHHHTT
T ss_pred HHHHHcc--HHHHHHHHHHHhCC
Confidence 3445555 66777777776543
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.35 E-value=3.8e-10 Score=105.25 Aligned_cols=233 Identities=11% Similarity=0.016 Sum_probs=169.2
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHCCCC-C----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----CC-CHH
Q 012126 169 NRILELLVTHRNYLRPAFDLFKSAHKHGVL-P----NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGV-----MP-DVE 237 (470)
Q Consensus 169 ~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----~p-~~~ 237 (470)
......+....|++++|...|++..+.... + ...++..+...|...|+++.|...+++..+... .+ ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 334455555777899999999988754211 2 245678888999999999999999988765311 11 245
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHH
Q 012126 238 SYRILMQGLCRKSQVNRAVDLLEDMLNK----GFV-PDTLSYTTLLNSLCRKKKLREAYKLLCRMKVK----GCNPDIVH 308 (470)
Q Consensus 238 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~ 308 (470)
+++.+..+|...|++++|++.|++..+. +.. ....++..+..+|...|++++|...+++..+. +.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 7788889999999999999999887653 211 12356778888999999999999999988761 22233677
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHhchhCC----CCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-HHHHH
Q 012126 309 YNTVVLGFCREGRAIDACKVLEDMPSNG----CLPNLVSYRTLVGGLCDQGM---FDVAKKYMQLMISKGFSPH-FSVSH 380 (470)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~ 380 (470)
+..+...|.+.|++++|...+++..+.. -+.....+..+...+...++ +.+|...+++ .+..++ ...+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~ 340 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHH
Confidence 8888899999999999999999876642 11223445556666677777 6677666665 222222 34667
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHH
Q 012126 381 ALIKGFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~~~~ 404 (470)
.+...|...|++++|.+.|++..+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788999999999999999998765
No 77
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.33 E-value=7.3e-09 Score=102.57 Aligned_cols=360 Identities=9% Similarity=-0.016 Sum_probs=224.3
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC---chhHHHH
Q 012126 76 LLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNL---PDRALKT 152 (470)
Q Consensus 76 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~ 152 (470)
...+..|+.....+ +.+...|..++..+.+.+.++.+..+|+.+... +|.....|..-+..-.+.|. ++.+.++
T Consensus 49 ~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp SCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 34444444444333 468999999999999999999999999999887 58899999999999888888 9999999
Q ss_pred HHHHHhCC-CccCHHHHHHHHHHHHhcCCC-------hhhHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHH---------
Q 012126 153 FRSMLEFN-CKPLPKQLNRILELLVTHRNY-------LRPAFDLFKSAHK-HGV-LP-NTKSYNIMMRAFC--------- 212 (470)
Q Consensus 153 ~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~-------~~~a~~~~~~~~~-~~~-~~-~~~~~~~li~~~~--------- 212 (470)
|++.+... ..|+...|...+.......+. .+.+.++|+..+. .|. .+ +...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99988743 248888888877766543332 1345577777664 455 44 4578887776543
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------------cCChHHHHHHH--------------------
Q 012126 213 FNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCR-------------KSQVNRAVDLL-------------------- 259 (470)
Q Consensus 213 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------------~~~~~~a~~~~-------------------- 259 (470)
..++++.+..+|++.+......-..+|......-.. ..+++.|...+
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 234567788888887753211112222211110000 01112222222
Q ss_pred -----------------------------------------------HHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHH-
Q 012126 260 -----------------------------------------------EDMLNKGFVPDTLSYTTLLNSLCRKKKLREAY- 291 (470)
Q Consensus 260 -----------------------------------------------~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~- 291 (470)
++++..-.. +...|-..+..+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHH
Confidence 222221111 2223333333444566777775
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCC---------CCCC------------HHHHHHHHHH
Q 012126 292 KLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNG---------CLPN------------LVSYRTLVGG 350 (470)
Q Consensus 292 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------~~p~------------~~~~~~li~~ 350 (470)
.+|++.... ++.+...|-..+....+.|++++|.++|+.+.+.. -.|+ ...|...+..
T Consensus 365 ~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 788777664 33455556667777778888888888888776531 0132 2356666676
Q ss_pred HHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHH
Q 012126 351 LCDQGMFDVAKKYMQLMISK-GFSPHFSVSHALIKGFCNV-GKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEME 428 (470)
Q Consensus 351 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 428 (470)
..+.|..+.|.++|..+++. +. ....+|...+..-.+. ++.+.|.++|+..++. ..-+...|...+......|+.+
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence 67778888888888888775 21 1223333333323333 4578888888887775 3346666777777777788888
Q ss_pred HHHHHHHHHHHccc
Q 012126 429 KLGEVLNEIVKVEI 442 (470)
Q Consensus 429 ~a~~~~~~m~~~~~ 442 (470)
.|..+|+..++...
T Consensus 522 ~AR~lferal~~~~ 535 (679)
T 4e6h_A 522 QVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHhcC
Confidence 88888888876543
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.33 E-value=1.3e-10 Score=96.10 Aligned_cols=164 Identities=15% Similarity=0.084 Sum_probs=105.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 012126 273 SYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLC 352 (470)
Q Consensus 273 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 352 (470)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444555555566666666665554432 2244555556666666666666666666655542 234556666666677
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHH
Q 012126 353 DQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGE 432 (470)
Q Consensus 353 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 432 (470)
..|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777766652 3456667777777777888888888887776653 2356677777788888888888888
Q ss_pred HHHHHHHc
Q 012126 433 VLNEIVKV 440 (470)
Q Consensus 433 ~~~~m~~~ 440 (470)
.++++.+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88887754
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=1.5e-09 Score=101.04 Aligned_cols=301 Identities=11% Similarity=-0.020 Sum_probs=201.2
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHHcCCchhHHHHHHHHHhCCC-ccCH---HHHH
Q 012126 98 YLILILKLGRAKYFSLIDDILITLKSEHYPVTPS----LFTYLIKIYAESNLPDRALKTFRSMLEFNC-KPLP---KQLN 169 (470)
Q Consensus 98 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~---~~~~ 169 (470)
.......+...|++++|...++......-..+.. +++.+...+...|++++|.+.+++...... ..+. ....
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4444556677899999999999887664222222 456677888889999999999988765211 1122 1123
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC----CHHH
Q 012126 170 RILELLVTHRNYLRPAFDLFKSAHKH----GVL--P-NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMP----DVES 238 (470)
Q Consensus 170 ~ll~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----~~~~ 238 (470)
..+..+....|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+..... ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 33445555778899999999988752 221 2 23456677888899999999999999887653221 2356
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC--HhhHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHH
Q 012126 239 YRILMQGLCRKSQVNRAVDLLEDMLNKGFVPD--TLSYT----TLLNSLCRKKKLREAYKLLCRMKVKGCNP---DIVHY 309 (470)
Q Consensus 239 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~ 309 (470)
+..+...+...|++++|...+++.......++ ..... ..+..+...|+.++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77788889999999999999998865321111 11111 23344778999999999998887643211 12345
Q ss_pred HHHHHHHHhcCCHhHHHHHHHhchhC----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012126 310 NTVVLGFCREGRAIDACKVLEDMPSN----GCLPNL-VSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIK 384 (470)
Q Consensus 310 ~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 384 (470)
..+...+...|++++|...++..... |..++. ..+..+..++...|+.++|...+++..... +. ...+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHH
Confidence 67778889999999999999887543 221222 256666778889999999999999987742 10 11223
Q ss_pred HHHccCCHHHHHHHHHHHHHCC
Q 012126 385 GFCNVGKVDEACGVLEELLKAG 406 (470)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~~ 406 (470)
.+...| +....+++.+....
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHTT
T ss_pred HHHHcc--HHHHHHHHHHHhCC
Confidence 344445 56667777776643
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=3.5e-10 Score=93.48 Aligned_cols=163 Identities=17% Similarity=0.116 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012126 238 SYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFC 317 (470)
Q Consensus 238 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 317 (470)
.+..+...+...|++++|++.++++.+.... +..++..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3344444555555555555555554443222 34445555555555555555555555554442 223445555555556
Q ss_pred hcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 012126 318 REGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACG 397 (470)
Q Consensus 318 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 397 (470)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666555432 2344555556666666666666666666666542 3345566666666666667777766
Q ss_pred HHHHHHH
Q 012126 398 VLEELLK 404 (470)
Q Consensus 398 ~~~~~~~ 404 (470)
.+++..+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.27 E-value=1.5e-10 Score=115.85 Aligned_cols=164 Identities=10% Similarity=0.022 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHH
Q 012126 94 SNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILE 173 (470)
Q Consensus 94 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 173 (470)
+...|+.+...+.+.|++++|++.|++..+.. |.+..++..+..+|.+.|++++|++.|++.++. .|+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~--------- 75 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPT--------- 75 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---------
Confidence 34455556666666666666666666655543 445555555666666666666666666555542 233
Q ss_pred HHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH
Q 012126 174 LLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVN 253 (470)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 253 (470)
+...|+.+..+|...|++++|++.|++.++.... +...|..+..+|.+.|+++
T Consensus 76 --------------------------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~ 128 (723)
T 4gyw_A 76 --------------------------FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIP 128 (723)
T ss_dssp --------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred --------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 3445555555555555555555555555544322 4455555555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 012126 254 RAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRM 297 (470)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 297 (470)
+|++.|++.++.... +...+..+..+|...|++++|.+.+++.
T Consensus 129 eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 129 EAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp HHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence 555555555554332 3445555555555555555555555444
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.25 E-value=2.6e-09 Score=91.82 Aligned_cols=205 Identities=10% Similarity=-0.014 Sum_probs=151.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 012126 199 PNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLL 278 (470)
Q Consensus 199 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 278 (470)
.|...+......+...|++++|.+.|++..+....++...+..+..++...|++++|++.+++..+.... +..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567888888888999999999999999888765467777777888899999999999999998887554 667888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCC---HHHHHHHH
Q 012126 279 NSLCRKKKLREAYKLLCRMKVKGCNPDI-------VHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPN---LVSYRTLV 348 (470)
Q Consensus 279 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li 348 (470)
.+|...|++++|...+++..+.. +.+. ..|..+...+...|++++|+..|++..+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 89999999999999999988763 2234 45777778888999999999999998875 454 45666666
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 012126 349 GGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPH-EDTWVMI 417 (470)
Q Consensus 349 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l 417 (470)
.++... +..+++++...+ ..+...|.... ....+.+++|...|++..+.. |+ ..+...+
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~--p~~~~~~~~l 220 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS--PNRTEIKQMQ 220 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHH
Confidence 666544 344455555543 23444454444 334567899999999998854 44 4444443
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.24 E-value=5.6e-10 Score=111.79 Aligned_cols=153 Identities=10% Similarity=-0.011 Sum_probs=117.4
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 012126 178 HRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVD 257 (470)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 257 (470)
..|++++|++.|++.++... -+...|+.+..+|.+.|++++|++.|++.++.... +...|..+..+|...|++++|++
T Consensus 21 ~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l~~~g~~~~A~~ 98 (723)
T 4gyw_A 21 EQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQDVQGALQ 98 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 33334444444444443322 25677888888899999999999999988887544 67888889999999999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchh
Q 012126 258 LLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPS 334 (470)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 334 (470)
.|++..+.... +..++..+..+|.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|.+.+++..+
T Consensus 99 ~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 99 CYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 99988887544 67788888999999999999999999888763 23567888888899999999888888877654
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.23 E-value=1.1e-10 Score=103.81 Aligned_cols=228 Identities=13% Similarity=-0.008 Sum_probs=158.7
Q ss_pred HhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC------CC-CCCHhhHHHH
Q 012126 212 CFNGDISIAYTLFNKMFER-------GVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNK------GF-VPDTLSYTTL 277 (470)
Q Consensus 212 ~~~g~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 277 (470)
...|++++|..+|++..+. ..+....++..+...|...|++++|+..++++.+. +- .....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4568888888888776652 22234677888999999999999999999998764 22 2245678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc------C-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhC------CCCC-CHHH
Q 012126 278 LNSLCRKKKLREAYKLLCRMKVK------G-CNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSN------GCLP-NLVS 343 (470)
Q Consensus 278 l~~~~~~~~~~~a~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~ 343 (470)
..+|...|++++|...+++..+. . .+.....+..+...|...|++++|...++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1223567888899999999999999999998764 1122 3567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHccCC------HHHHHHHHHHHHHCCCCC
Q 012126 344 YRTLVGGLCDQGMFDVAKKYMQLMISK-------GFSPH-FSVSHALIKGFCNVGK------VDEACGVLEELLKAGEAP 409 (470)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~-~~~~~~li~~~~~~g~------~~~a~~~~~~~~~~~~~p 409 (470)
+..+...+...|++++|...++++.+. ...+. ...+..+...+...+. +..+...++.... ....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888899999999999999999998763 11222 2233333333333333 2222222222211 1112
Q ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 012126 410 HEDTWVMIVPQICAGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 410 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 440 (470)
...++..+...|...|++++|.+++++.++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3447888999999999999999999998753
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.21 E-value=2.8e-09 Score=91.58 Aligned_cols=199 Identities=13% Similarity=0.027 Sum_probs=153.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012126 235 DVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVL 314 (470)
Q Consensus 235 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 314 (470)
|...+......+...|++++|++.|++..+....++...+..+..++...|++++|...+++..+.. +.+...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 5678888899999999999999999999987654577777779999999999999999999998863 225677888999
Q ss_pred HHHhcCCHhHHHHHHHhchhCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 012126 315 GFCREGRAIDACKVLEDMPSNGCLPNL-------VSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPH---FSVSHALIK 384 (470)
Q Consensus 315 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~ 384 (470)
.|...|++++|+..+++..+.. +.+. ..|..+...+...|++++|...++++++. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 9999999999999999988753 1234 45777788888999999999999999885 444 456777777
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHccccCCce
Q 012126 385 GFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKVEIKGDTR 447 (470)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 447 (470)
+|...| ..+++++...+. .+...|.... ....+.+++|...+++.++. .|+..
T Consensus 162 ~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~ 214 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRT 214 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCH
Confidence 775544 445566655432 2444554443 34567789999999999965 45543
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.18 E-value=3.8e-10 Score=100.18 Aligned_cols=233 Identities=13% Similarity=0.047 Sum_probs=121.0
Q ss_pred CCChHHHHHHHHHhhc------CCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhC------C-CCCCHHHHHHHHH
Q 012126 72 QSDPLLAKEIFDYASR------QPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSE------H-YPVTPSLFTYLIK 138 (470)
Q Consensus 72 ~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~ 138 (470)
.++++.|+..|+.+.. ..+.+....++..+...+...|++++|...++..... + .+....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4555555555554432 1111223445666666666677777777666666543 1 1223445566666
Q ss_pred HHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 012126 139 IYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDIS 218 (470)
Q Consensus 139 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 218 (470)
.|...|++++|++.|++..... ++...........++..+...|...|+++
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~-----------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 144 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIR-----------------------------EKVLGKFHPDVAKQLNNLALLCQNQGKAE 144 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHH-----------------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHhccHHHHHHHHHHHHHHH-----------------------------HHHcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666654310 00000000113455666777777777777
Q ss_pred HHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-------CCCCC-HhhHHHHHHHHHh
Q 012126 219 IAYTLFNKMFER------GVMP-DVESYRILMQGLCRKSQVNRAVDLLEDMLNK-------GFVPD-TLSYTTLLNSLCR 283 (470)
Q Consensus 219 ~a~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~ll~~~~~ 283 (470)
+|..+|++..+. +..| ...++..+..+|...|++++|++.++++.+. ...+. ...+..+...+..
T Consensus 145 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (283)
T 3edt_B 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREES 224 (283)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhc
Confidence 777777776654 1111 3456666777777777777777777776642 11122 2223323323322
Q ss_pred cCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchh
Q 012126 284 KKK------LREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPS 334 (470)
Q Consensus 284 ~~~------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 334 (470)
.+. +..+...++..... .+....++..+...|...|++++|..++++..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 225 KDKRRDSAPYGEYGSWYKACKVD-SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp TCCCCC------------CCCCC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCchhHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222 22222222222111 112345677777888888888888888877654
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.11 E-value=8.9e-09 Score=90.71 Aligned_cols=180 Identities=9% Similarity=0.037 Sum_probs=118.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012126 220 AYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGF-VPDTLSYTTLLNSLCRKKKLREAYKLLCRMK 298 (470)
Q Consensus 220 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 298 (470)
|...|++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777776654 34555556777788888888888888888766654 1256677777888888888888888888887
Q ss_pred HcCCCC-----CHHHHHHHHHHH--HhcC--CHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012126 299 VKGCNP-----DIVHYNTVVLGF--CREG--RAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMIS 369 (470)
Q Consensus 299 ~~~~~~-----~~~~~~~li~~~--~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 369 (470)
+. .| +..+...+..++ ...| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 65 44 244445555552 2223 788888888887664 35433333444477788888888888876654
Q ss_pred C-----C----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 012126 370 K-----G----FSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAG 406 (470)
Q Consensus 370 ~-----~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (470)
. . -+.+..++..+|......|+ +|.++++++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 2 0 02345566455555555665 7778888887743
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=6.5e-08 Score=85.27 Aligned_cols=179 Identities=10% Similarity=0.059 Sum_probs=112.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012126 185 AFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGV-MPDVESYRILMQGLCRKSQVNRAVDLLEDML 263 (470)
Q Consensus 185 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 263 (470)
++..|++....+ .++..++..+..++...|++++|++++.+.++.|. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555666655544 34555556777777777888888888877766553 1256667777777888888888888888776
Q ss_pred hCCCCC-----CHhhHHHHHHHHH--hcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchh
Q 012126 264 NKGFVP-----DTLSYTTLLNSLC--RKK--KLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPS 334 (470)
Q Consensus 264 ~~~~~~-----~~~~~~~ll~~~~--~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 334 (470)
+. .| +..+...|..++. ..| +.++|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 65 33 2344445554422 223 777888888887665 34433334444477778888888888776544
Q ss_pred C-----CC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 012126 335 N-----GC----LPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISK 370 (470)
Q Consensus 335 ~-----~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 370 (470)
. +. +-|..++..+|......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 2 00 2245555455555555565 777777777774
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=9e-09 Score=79.75 Aligned_cols=130 Identities=13% Similarity=0.171 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012126 308 HYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFC 387 (470)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 387 (470)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34555666666677777777776665542 2245566666666777777777777777776653 334566667777777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 012126 388 NVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 440 (470)
..|++++|.++++++.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777776643 235667777777777788888888887777654
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.09 E-value=7.4e-09 Score=92.68 Aligned_cols=205 Identities=14% Similarity=0.053 Sum_probs=115.7
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCChHHHH
Q 012126 182 LRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFER----GVMPD-VESYRILMQGLCRKSQVNRAV 256 (470)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~ 256 (470)
+++|...|.+. ...|...|++++|.+.|++..+. |-.++ ..+|+.+..+|...|++++|+
T Consensus 33 ~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 33 FEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 66666666554 34566778888888877776543 21111 456777777777788888887
Q ss_pred HHHHHHHhCCCC---C--CHhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHhHH
Q 012126 257 DLLEDMLNKGFV---P--DTLSYTTLLNSLCRK-KKLREAYKLLCRMKVKGCN-PD----IVHYNTVVLGFCREGRAIDA 325 (470)
Q Consensus 257 ~~~~~~~~~~~~---~--~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~~~~~~a 325 (470)
..|++..+.... + -..+++.+..+|... |++++|+..|++..+.... .+ ..+++.+...+.+.|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 777776543110 0 123566666667664 7777777777766543100 01 23456666667777777777
Q ss_pred HHHHHhchhCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHH--ccCC
Q 012126 326 CKVLEDMPSNGCLPNL------VSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPH------FSVSHALIKGFC--NVGK 391 (470)
Q Consensus 326 ~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~--~~g~ 391 (470)
+..|++..+....... ..|..+..++...|++++|...+++..+. .|+ ...+..++.+|. ..++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 7777766654322111 13455555666667777777776666542 222 112333444443 3445
Q ss_pred HHHHHHHHHHHH
Q 012126 392 VDEACGVLEELL 403 (470)
Q Consensus 392 ~~~a~~~~~~~~ 403 (470)
+++|...|+++.
T Consensus 256 ~~~A~~~~~~~~ 267 (292)
T 1qqe_A 256 LSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHTTSS
T ss_pred HHHHHHHhccCC
Confidence 666666655543
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=1.3e-08 Score=78.76 Aligned_cols=128 Identities=13% Similarity=0.155 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 012126 204 YNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCR 283 (470)
Q Consensus 204 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 283 (470)
|..+...+...|++++|..+++++.+.+.. +...+..+...+...|++++|...++++...+.. +...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence 444555555556666666665555544322 4445555555555555555555555555544322 34444455555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchh
Q 012126 284 KKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPS 334 (470)
Q Consensus 284 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 334 (470)
.|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555554432 12334444445555555555555555554443
No 92
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.06 E-value=3.5e-07 Score=81.36 Aligned_cols=217 Identities=12% Similarity=0.062 Sum_probs=128.8
Q ss_pred hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC--CchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHH
Q 012126 112 SLIDDILITLKSEHYPVTPSLFTYLIKIYAESN--LPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLF 189 (470)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~ 189 (470)
++|..+.+.++... |-+..+|+.--.++...| +++++++.++.++.
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~------------------------------- 97 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIAL------------------------------- 97 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH-------------------------------
Confidence 46666666666554 445555665555555555 55555555555544
Q ss_pred HHHHHCCCCCCHHHHHHHHHHH----Hhc---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH--HHHHHHH
Q 012126 190 KSAHKHGVLPNTKSYNIMMRAF----CFN---GDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVN--RAVDLLE 260 (470)
Q Consensus 190 ~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~ 260 (470)
..++ +..+|+.-...+ ... +++++++++++++.+...+ +..+|+.-.-.+.+.|.++ ++++.++
T Consensus 98 -----~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~ 170 (306)
T 3dra_A 98 -----DNEK-NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVD 170 (306)
T ss_dssp -----HCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred -----HCcc-cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHH
Confidence 3222 333333222222 222 5566677777777666544 6666666655666666666 7777777
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhH-HHHHHHhch
Q 012126 261 DMLNKGFVPDTLSYTTLLNSLCRKKK------LREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAID-ACKVLEDMP 333 (470)
Q Consensus 261 ~~~~~~~~~~~~~~~~ll~~~~~~~~------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~ 333 (470)
++.+..+. |..+|+.-...+.+.+. ++++++.++.+.... +-|...|+.+-..+.+.|+..+ +..+..++.
T Consensus 171 ~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 171 KVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred HHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 77766554 66666655555555554 677777777776653 3366677777777777666443 445666655
Q ss_pred hCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012126 334 SNG--CLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMIS 369 (470)
Q Consensus 334 ~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 369 (470)
+.+ -..+...+..++..+.+.|+.++|.++++.+.+
T Consensus 249 ~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 249 DLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 432 123566677777777777777777777777765
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.04 E-value=1.8e-08 Score=90.15 Aligned_cols=166 Identities=13% Similarity=0.047 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---C--CHHHHHHHHHHHHHc-CChHHHHHHHHHHHhCCCCC-C----
Q 012126 202 KSYNIMMRAFCFNGDISIAYTLFNKMFERGVM---P--DVESYRILMQGLCRK-SQVNRAVDLLEDMLNKGFVP-D---- 270 (470)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---p--~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~-~---- 270 (470)
.+|+.+..+|...|++++|+..|++..+.... + -..+++.+...|... |++++|+..|++..+..... +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 45666666666666666666666665442110 0 134566666667664 77777777777665431110 1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCH---
Q 012126 271 TLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDI------VHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNL--- 341 (470)
Q Consensus 271 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--- 341 (470)
..++..+...+.+.|++++|...|++..+....... ..|..+..++...|++++|...|++..+. .|+.
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~ 235 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCc
Confidence 235666677777777777777777777664322111 14555666677777777777777776653 2221
Q ss_pred ---HHHHHHHHHHH--hcCChHHHHHHHHHHHH
Q 012126 342 ---VSYRTLVGGLC--DQGMFDVAKKYMQLMIS 369 (470)
Q Consensus 342 ---~~~~~li~~~~--~~g~~~~a~~~~~~~~~ 369 (470)
..+..++.++. ..+++++|...|+.+..
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 12334445553 34556666666655533
No 94
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.03 E-value=5e-08 Score=82.64 Aligned_cols=175 Identities=14% Similarity=-0.013 Sum_probs=85.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC----CHHHHHHHHH
Q 012126 220 AYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKK----KLREAYKLLC 295 (470)
Q Consensus 220 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~ 295 (470)
|.+.|++..+.| +...+..+...|...+++++|++.|++..+.| +...+..|..+|.. + +.++|.+.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444444444443 44445555555555555555555555555443 33444444444444 3 5555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHhchhCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHHH
Q 012126 296 RMKVKGCNPDIVHYNTVVLGFCR----EGRAIDACKVLEDMPSNGCL-PNLVSYRTLVGGLCD----QGMFDVAKKYMQL 366 (470)
Q Consensus 296 ~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~~ 366 (470)
+..+.| +...+..|...|.. .+++++|+.+|++..+.|.. .+...+..|...|.. .+++++|..+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554443 34444445444544 45555555555555554310 013444445555554 4555666666665
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcc-C-----CHHHHHHHHHHHHHCC
Q 012126 367 MISKGFSPHFSVSHALIKGFCNV-G-----KVDEACGVLEELLKAG 406 (470)
Q Consensus 367 ~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~ 406 (470)
..+. ..+...+..|..+|... | ++++|...|+...+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5554 11223344444444322 2 5666666666555544
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.03 E-value=1.7e-08 Score=88.72 Aligned_cols=63 Identities=6% Similarity=0.031 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHcCCchhHHHHHHHHHh
Q 012126 95 NSTYLILILKLGRAKYFSLIDDILITLKSEHYPVT---PSLFTYLIKIYAESNLPDRALKTFRSMLE 158 (470)
Q Consensus 95 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 158 (470)
...+..+...+.+.|++++|...|+.+.... |.+ ..++..+..+|...|++++|+..|++.++
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ 80 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3334444444444455555555554444432 222 34444444444455555555555544444
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.02 E-value=2.6e-08 Score=87.51 Aligned_cols=185 Identities=10% Similarity=0.059 Sum_probs=113.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-C-CHhhH
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPD---VESYRILMQGLCRKSQVNRAVDLLEDMLNKGFV-P-DTLSY 274 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~ 274 (470)
+...+..+...+.+.|++++|...|+++.+.... + ...+..+..+|...|++++|+..|++..+..+. + ...++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 5666777777777888888888888887776432 2 566777777788888888888888887765331 1 23455
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHH
Q 012126 275 TTLLNSLCR--------KKKLREAYKLLCRMKVKGCNPDI-VHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYR 345 (470)
Q Consensus 275 ~~ll~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 345 (470)
..+..++.. .|++++|...|+++.+. .|+. .....+... ..+... ....+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~--------------~~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKI--------------RELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHH--------------HHHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHH--------------HHHHHH----HHHHHH
Confidence 566666766 77777777777777765 2322 222111110 000000 011134
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHHC
Q 012126 346 TLVGGLCDQGMFDVAKKYMQLMISKGFSP--HFSVSHALIKGFCNV----------GKVDEACGVLEELLKA 405 (470)
Q Consensus 346 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~ 405 (470)
.+...|.+.|++++|...++++++..... ....+..+..+|... |++++|...|+++++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 45666777777888887777777642111 234556666666655 7777788888777764
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.01 E-value=2.8e-08 Score=83.96 Aligned_cols=24 Identities=17% Similarity=0.110 Sum_probs=14.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC
Q 012126 207 MMRAFCFNGDISIAYTLFNKMFER 230 (470)
Q Consensus 207 li~~~~~~g~~~~a~~~~~~m~~~ 230 (470)
....+...|++++|...|++..+.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~ 33 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL 33 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344455666666666666666554
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.01 E-value=6.2e-08 Score=82.08 Aligned_cols=178 Identities=14% Similarity=0.094 Sum_probs=135.4
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----ChHHHHHH
Q 012126 183 RPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKS----QVNRAVDL 258 (470)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~ 258 (470)
.+|++.|++..+.| +...+..|...|...+++++|.++|++..+.| +...+..+...|.. + ++++|+++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 45667777777764 67788888888888899999999998888876 56777777777777 6 88899999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----cCCHhHHHHHH
Q 012126 259 LEDMLNKGFVPDTLSYTTLLNSLCR----KKKLREAYKLLCRMKVKGCN-PDIVHYNTVVLGFCR----EGRAIDACKVL 329 (470)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~ 329 (470)
|++..+.| +...+..|..+|.. .+++++|.+.|++..+.|.. .+...+..|...|.. .+++++|+..|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 98887765 56677777777876 78899999999988877521 126777788888887 77899999999
Q ss_pred HhchhCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHCCC
Q 012126 330 EDMPSNGCLPNLVSYRTLVGGLCDQ-G-----MFDVAKKYMQLMISKGF 372 (470)
Q Consensus 330 ~~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~~ 372 (470)
++..+. ..+...+..|...|... | +.++|..+++...+.|.
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 988775 23445666677776543 3 78999999998888763
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.99 E-value=2.2e-07 Score=82.71 Aligned_cols=226 Identities=10% Similarity=0.046 Sum_probs=155.6
Q ss_pred HHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccC--CchHHHHHHHHHhhCCCCCCHHHHHHHHHHH----
Q 012126 67 KLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAK--YFSLIDDILITLKSEHYPVTPSLFTYLIKIY---- 140 (470)
Q Consensus 67 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---- 140 (470)
.+.......++|+++++.++... +-....|+.--..+...+ +++++.+.++.+.... |-+..+|+.-..++
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIM 117 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHH
Confidence 44455666679999999988654 345667888778888888 9999999999998876 66777888755555
Q ss_pred HHc---CCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChh--hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 012126 141 AES---NLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLR--PAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNG 215 (470)
Q Consensus 141 ~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 215 (470)
... +++++++++++.+.+.+ .-+...|+.---.+. ..+.++ ++++.++++.+..+. |...|+.-...+...|
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~-~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVD-TFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-HTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSG
T ss_pred HhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-HhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 555 67888888888888743 123344443332222 334456 788888888876654 7777776666666666
Q ss_pred C------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC--CCCCHhhHHHHHHHHHhcCC
Q 012126 216 D------ISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNR-AVDLLEDMLNKG--FVPDTLSYTTLLNSLCRKKK 286 (470)
Q Consensus 216 ~------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~ 286 (470)
. ++++++.+++++...+. |...|+-+...+.+.|.... +..+..++.+.+ -..+...+..+.++|.+.|+
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK 273 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred ccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence 5 77777777777777655 77777777777777766333 445555554432 12256677777777777777
Q ss_pred HHHHHHHHHHHHH
Q 012126 287 LREAYKLLCRMKV 299 (470)
Q Consensus 287 ~~~a~~~~~~m~~ 299 (470)
.++|.++++.+.+
T Consensus 274 ~~~A~~~~~~l~~ 286 (306)
T 3dra_A 274 YNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777765
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.99 E-value=4.1e-08 Score=82.96 Aligned_cols=192 Identities=12% Similarity=0.049 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012126 131 SLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRA 210 (470)
Q Consensus 131 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 210 (470)
..+......+...|++++|+..|++..+. .|+......... .... ........+.+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~----~~~~---------------~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTN----VDKN---------------SEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHH----SCTT---------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhh----hcch---------------hhhhHHHHHHHHHH
Confidence 33444555666778888888888877763 243322111100 0000 00122334457778
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC--HH
Q 012126 211 FCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKK--LR 288 (470)
Q Consensus 211 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~ 288 (470)
|.+.|++++|...|++..+..+. +...+..+..++...|++++|+..|++..+..+. +..++..+..+|...|+ .+
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHH
Confidence 88888888888888888877544 6778888888888888888888888888876544 66777777777765543 34
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHH
Q 012126 289 EAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVG 349 (470)
Q Consensus 289 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 349 (470)
.+...++..... .|....+.....++...|++++|...|++..+. .|+......+..
T Consensus 142 ~~~~~~~~~~~~--~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~~ 198 (208)
T 3urz_A 142 KLETDYKKLSSP--TKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHC---CC--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 455555555422 222333444555666778888888888888774 577655554433
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.98 E-value=1e-08 Score=84.10 Aligned_cols=161 Identities=12% Similarity=0.023 Sum_probs=96.5
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHH-H
Q 012126 98 YLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELL-V 176 (470)
Q Consensus 98 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~-~ 176 (470)
+......+.+.|++++|...++...+.. |.+...+..+..++...|++++|+..|++.... .|+.. +..+...+ .
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHHHHHHH
Confidence 3344445566666666666666655443 445666666666666677777777766665542 23222 22221111 1
Q ss_pred hcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChHHH
Q 012126 177 THRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMP-DVESYRILMQGLCRKSQVNRA 255 (470)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a 255 (470)
...+....+...+++..+..+. +...+..+...+...|++++|...|+++.+..+.+ +...+..+..++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 1111123456666666665432 56777777778888888888888888877765432 345677777777788888888
Q ss_pred HHHHHHHH
Q 012126 256 VDLLEDML 263 (470)
Q Consensus 256 ~~~~~~~~ 263 (470)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777654
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.97 E-value=4.5e-08 Score=87.28 Aligned_cols=167 Identities=7% Similarity=-0.016 Sum_probs=114.8
Q ss_pred CCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHH
Q 012126 93 HSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRIL 172 (470)
Q Consensus 93 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 172 (470)
.+...+..+...+.+.|++++|...++...... |.+...+..+...+...|++++|+..++++... .|+........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 345566677777788888888888888887765 567777888888888888888888888877663 35554444433
Q ss_pred HHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCC
Q 012126 173 ELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMP-DVESYRILMQGLCRKSQ 251 (470)
Q Consensus 173 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~ 251 (470)
.......+..+.|...+++.....+. +...+..+...+...|++++|...|.++.+..... +...+..++..+...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 33333444456677777777765532 66777777777777777777777777777764331 24567777777777777
Q ss_pred hHHHHHHHHHHH
Q 012126 252 VNRAVDLLEDML 263 (470)
Q Consensus 252 ~~~a~~~~~~~~ 263 (470)
.++|...|++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 777777776543
No 103
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.95 E-value=1.6e-06 Score=83.17 Aligned_cols=347 Identities=10% Similarity=-0.002 Sum_probs=218.6
Q ss_pred CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCC-chHHHHHHHHHhhC-CC-CCCHHHHHHHHHHHH----HcC
Q 012126 72 QSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKY-FSLIDDILITLKSE-HY-PVTPSLFTYLIKIYA----ESN 144 (470)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~li~~~~----~~g 144 (470)
.++.+.+..+|+..... .|+...|...+....+.+. .+.+..+|+..... |. +.+..+|...+..+. ..|
T Consensus 27 ~~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~ 103 (493)
T 2uy1_A 27 SKDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQT 103 (493)
T ss_dssp TTCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHH
T ss_pred CCCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhH
Confidence 38899999999999864 3689999888887777653 45677788877654 32 447788888887654 346
Q ss_pred CchhHHHHHHHHHhCCCccCHHHHHHHHHHHHh------------cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012126 145 LPDRALKTFRSMLEFNCKPLPKQLNRILELLVT------------HRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFC 212 (470)
Q Consensus 145 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 212 (470)
+.+.+.++|++.+......-...|......-.. ....+..|..+++.+...-...+...|...+..-.
T Consensus 104 ~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~ 183 (493)
T 2uy1_A 104 RIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEM 183 (493)
T ss_dssp HHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 788899999999873221111222222111000 00112334444444432100013446666555432
Q ss_pred hcC--C-----hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 012126 213 FNG--D-----ISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKK 285 (470)
Q Consensus 213 ~~g--~-----~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 285 (470)
..+ - .+.+..+|++++.... .+...|...+..+.+.|+.+.|..+|++.... |....... .|+...
T Consensus 184 ~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~ 256 (493)
T 2uy1_A 184 ENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVM 256 (493)
T ss_dssp TCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHT
T ss_pred cCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhc
Confidence 211 1 3456789999887643 36788888888889999999999999999987 33322211 222221
Q ss_pred CHHHHHHHHHHHHHcC---------C---CCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHh
Q 012126 286 KLREAYKLLCRMKVKG---------C---NPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCD 353 (470)
Q Consensus 286 ~~~~a~~~~~~m~~~~---------~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 353 (470)
..++. ++.+.+.- . ......|-..+....+.+..+.|..+|+.. ... ..+...|...+..-..
T Consensus 257 e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~ 331 (493)
T 2uy1_A 257 DEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY 331 (493)
T ss_dssp TCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH
T ss_pred chhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH
Confidence 11111 22222210 0 111245666677777788899999999998 321 2344455433322222
Q ss_pred -cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHH
Q 012126 354 -QGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGE 432 (470)
Q Consensus 354 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 432 (470)
.++.+.|..+|+...+.- +-+...+...++...+.|+.+.|..+|+.+. .....|...+..-...|+.+.+..
T Consensus 332 ~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~ 405 (493)
T 2uy1_A 332 ATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRE 405 (493)
T ss_dssp HHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHH
Confidence 336999999999998853 3345566777888888999999999999972 257888888887778899999999
Q ss_pred HHHHHHH
Q 012126 433 VLNEIVK 439 (470)
Q Consensus 433 ~~~~m~~ 439 (470)
+++++.+
T Consensus 406 v~~~~~~ 412 (493)
T 2uy1_A 406 LVDQKMD 412 (493)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988875
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.94 E-value=1.1e-08 Score=102.72 Aligned_cols=174 Identities=9% Similarity=-0.053 Sum_probs=131.4
Q ss_pred HccCCchHHHHHHHHHh--------hCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHh
Q 012126 106 GRAKYFSLIDDILITLK--------SEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVT 177 (470)
Q Consensus 106 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 177 (470)
...|++++|.+.++... +.. +.+...+..+...|...|++++|++.|++..+. .|+.......+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHH
Confidence 67788888888888887 433 556777888888888888888888888888773 4555444445555555
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 012126 178 HRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVD 257 (470)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 257 (470)
..|++++|...|++..+.... +...|..+..+|.+.|++++ .+.|++..+.+.. +...|..+..++.+.|++++|++
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 667788888888888876543 67788888899999999999 9999998887544 67888889999999999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 012126 258 LLEDMLNKGFVPDTLSYTTLLNSLCRKKK 286 (470)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 286 (470)
.|++..+.+.. +...+..+..++...++
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 99988776433 45667777777655444
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.93 E-value=1.4e-08 Score=101.94 Aligned_cols=188 Identities=10% Similarity=-0.022 Sum_probs=146.9
Q ss_pred HHcCCchhHHHHHHHHHh------CCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 012126 141 AESNLPDRALKTFRSMLE------FNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFN 214 (470)
Q Consensus 141 ~~~g~~~~A~~~~~~~~~------~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 214 (470)
...|++++|++.+++..+ ....|+.......+...+...|++++|...|++..+.... +...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHc
Confidence 678999999999999881 1134554444444444445667799999999999986543 788999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 012126 215 GDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLL 294 (470)
Q Consensus 215 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 294 (470)
|++++|.+.|++..+.... +...|..+..++.+.|++++ ++.|++..+.+.. +...+..+..++.+.|++++|...|
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999887544 67788889999999999999 9999999887655 7778999999999999999999999
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHHhcC--------CHhHHHHHHHhchh
Q 012126 295 CRMKVKGCNPD-IVHYNTVVLGFCREG--------RAIDACKVLEDMPS 334 (470)
Q Consensus 295 ~~m~~~~~~~~-~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~ 334 (470)
++..+. .|+ ...+..+..++...+ ++++|.+.+..+..
T Consensus 558 ~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~ 604 (681)
T 2pzi_A 558 DEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPP 604 (681)
T ss_dssp HTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCT
T ss_pred Hhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCC
Confidence 998876 444 566777777765544 36677777776643
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.90 E-value=2.9e-08 Score=81.39 Aligned_cols=164 Identities=15% Similarity=0.104 Sum_probs=126.5
Q ss_pred CChHHHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 012126 60 GSPCRVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKI 139 (470)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 139 (470)
.........+...|+++.|+..|+.+.... +.+...+..+...+.+.|++++|...++...... | ++..+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~~~~~~~~~~~ 82 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY-Q-DNSYKSLIAKL 82 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C-ChHHHHHHHHH
Confidence 344566788899999999999999987654 4578889999999999999999999999987664 3 55544433322
Q ss_pred -HHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh
Q 012126 140 -YAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLP-NTKSYNIMMRAFCFNGDI 217 (470)
Q Consensus 140 -~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~ 217 (470)
+...+...+|+..|++..+ ..|+.......+..+....|++++|...|+++.+....+ +...+..+...+...|+.
T Consensus 83 ~~~~~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHhhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 2233444568899999887 457655555556666667888999999999999876543 466889999999999999
Q ss_pred hHHHHHHHHHHH
Q 012126 218 SIAYTLFNKMFE 229 (470)
Q Consensus 218 ~~a~~~~~~m~~ 229 (470)
++|...|++...
T Consensus 161 ~~A~~~y~~al~ 172 (176)
T 2r5s_A 161 NAIASKYRRQLY 172 (176)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999999987654
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.89 E-value=3e-07 Score=78.66 Aligned_cols=203 Identities=9% Similarity=-0.011 Sum_probs=114.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH--hhHH
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMP--DVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDT--LSYT 275 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 275 (470)
+...+..+...+...|++++|...|+++.+..... ....+..+..+|.+.|++++|+..|+++.+..+.... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455556666777777777777777777653321 1345666677777777777777777777765433111 1233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHH-HHHHHHHHHHhc
Q 012126 276 TLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLV-SYRTLVGGLCDQ 354 (470)
Q Consensus 276 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~ 354 (470)
.+..++...+.. .+ ..|..+...+...|++++|+..|+++.+. .|+.. .+.....
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----- 138 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----- 138 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH-----
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH-----
Confidence 333333332210 00 01122223334567778888888887764 23322 2211110
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHcCCcHHHH
Q 012126 355 GMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPH----EDTWVMIVPQICAGEEMEKL 430 (470)
Q Consensus 355 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a 430 (470)
...+...+. .....+...|.+.|++++|...|+++++.. |+ ...+..+..+|.+.|++++|
T Consensus 139 -----l~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 139 -----LVFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp -----HHHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -----HHHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 000011110 112345677888899999999999988753 33 24678888889999999999
Q ss_pred HHHHHHHHHcc
Q 012126 431 GEVLNEIVKVE 441 (470)
Q Consensus 431 ~~~~~~m~~~~ 441 (470)
.+.++.+...+
T Consensus 204 ~~~~~~l~~~~ 214 (225)
T 2yhc_A 204 EKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhhC
Confidence 99999888654
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.88 E-value=1.1e-08 Score=81.42 Aligned_cols=83 Identities=10% Similarity=0.060 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 012126 205 NIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRK 284 (470)
Q Consensus 205 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 284 (470)
..+...|.+.|++++|.+.|++.++.... +..+|..+..+|...|++++|+..|++..+..+. +..++..+..+|.+.
T Consensus 35 ~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 35 FYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKN 112 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 33444444444444444444444444322 3444444444444444444444444444443322 334444444444444
Q ss_pred CCHHH
Q 012126 285 KKLRE 289 (470)
Q Consensus 285 ~~~~~ 289 (470)
|+.++
T Consensus 113 ~~~~~ 117 (150)
T 4ga2_A 113 DVTDG 117 (150)
T ss_dssp CSSSS
T ss_pred CChHH
Confidence 44443
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.88 E-value=2.1e-07 Score=79.61 Aligned_cols=191 Identities=8% Similarity=0.040 Sum_probs=110.4
Q ss_pred cCCChhhHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCChH
Q 012126 178 HRNYLRPAFDLFKSAHKHGVL-P-NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDV--ESYRILMQGLCRKSQVN 253 (470)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~ 253 (470)
..|++++|...|+++.+.... + ....+..+..+|.+.|++++|+..|+++.+..+.... ..+..+..++...+..
T Consensus 16 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~- 94 (225)
T 2yhc_A 16 QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS- 94 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh-
Confidence 556799999999999976432 1 2467888899999999999999999999987543221 2444455555543311
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHhc
Q 012126 254 RAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDI-VHYNTVVLGFCREGRAIDACKVLEDM 332 (470)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m 332 (470)
.+. .|..+...+...|+.++|...|+++.+. .|+. ..+.+..... .+...+
T Consensus 95 ----~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~----------~~~~~~ 146 (225)
T 2yhc_A 95 ----ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV----------FLKDRL 146 (225)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH----------HHHHHH
T ss_pred ----hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH----------HHHHHH
Confidence 110 1222333444567777777777777765 2332 2222111100 000000
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 012126 333 PSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPH---FSVSHALIKGFCNVGKVDEACGVLEELLKAG 406 (470)
Q Consensus 333 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (470)
. .....+...+.+.|++++|...++++++.. +.+ ...+..+..+|.+.|++++|.+.++.+...+
T Consensus 147 ~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 A--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp H--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred H--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0 011234556677777777777777777642 111 2456667777777788888877777776654
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.88 E-value=9.2e-08 Score=85.21 Aligned_cols=164 Identities=15% Similarity=0.055 Sum_probs=98.9
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHH-HH
Q 012126 271 TLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTL-VG 349 (470)
Q Consensus 271 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-i~ 349 (470)
...+..+...+...|++++|...|++..+.. +-+...+..+...+.+.|++++|...++++... .|+....... ..
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHH
Confidence 3444555556666677777777776666552 224556666666677777777777777766554 2443322222 22
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCcHH
Q 012126 350 GLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAP-HEDTWVMIVPQICAGEEME 428 (470)
Q Consensus 350 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 428 (470)
.+...++.+.|...+++..+.. +.+...+..+...+...|++++|...|+++++..... +...+..++..+...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 2445566666666676666653 3455666677777777777777777777776643211 1446667777777777777
Q ss_pred HHHHHHHHHH
Q 012126 429 KLGEVLNEIV 438 (470)
Q Consensus 429 ~a~~~~~~m~ 438 (470)
+|...+++.+
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 7776666654
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.86 E-value=1.1e-08 Score=81.33 Aligned_cols=143 Identities=9% Similarity=-0.104 Sum_probs=84.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 012126 209 RAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLR 288 (470)
Q Consensus 209 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 288 (470)
..+...|++++|+..++........ +...+..+...|.+.|++++|++.|++.++..+. +..+|..+..+|.+.|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchH
Confidence 3444556667777766665543211 3344555666777777777777777777665443 5666777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHH-HHhchhCCCCCCHHHHHHHHHHHHhcC
Q 012126 289 EAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKV-LEDMPSNGCLPNLVSYRTLVGGLCDQG 355 (470)
Q Consensus 289 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~m~~~~~~p~~~~~~~li~~~~~~g 355 (470)
+|...|++..+.. +-+...|..+...|.+.|++++|.+. +++..+.. +-+...|......+...|
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 7777777766652 22456666666777777776655543 35555532 123455555555555544
No 112
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.83 E-value=5.2e-07 Score=80.64 Aligned_cols=164 Identities=10% Similarity=0.075 Sum_probs=112.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCCHhHHHHHHHhchhCCCC-CC----HHHHHH
Q 012126 277 LLNSLCRKKKLREAYKLLCRMKVKGC-NPDI----VHYNTVVLGFCREGRAIDACKVLEDMPSNGCL-PN----LVSYRT 346 (470)
Q Consensus 277 ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ 346 (470)
.+..+...|++++|..++++..+... .++. ..+..+...+...|++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566777888888888877765421 1221 12334555666677888888888887763222 22 235777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 012126 347 LVGGLCDQGMFDVAKKYMQLMISK-----GFSPH-FSVSHALIKGFCNVGKVDEACGVLEELLKA----GEAPH-EDTWV 415 (470)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~ 415 (470)
+...|...|++++|...++++.+. +..+. ..++..+...|.+.|++++|.+.+++.++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888888887741 11111 337778888899999999999998887642 22222 56888
Q ss_pred HHHHHHHcCC-cHHHHHHHHHHHHHc
Q 012126 416 MIVPQICAGE-EMEKLGEVLNEIVKV 440 (470)
Q Consensus 416 ~l~~~~~~~g-~~~~a~~~~~~m~~~ 440 (470)
.+..+|.+.| ++++|.+.+++++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8888899999 469999999888764
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.82 E-value=1e-07 Score=93.99 Aligned_cols=154 Identities=10% Similarity=-0.032 Sum_probs=85.9
Q ss_pred CCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHH
Q 012126 72 QSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALK 151 (470)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 151 (470)
.|++++|++.|+.+.+.. +.+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...|...|++++|++
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 466777777777776543 3456777777777777788888888777777664 5567777777777777777777777
Q ss_pred HHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHH
Q 012126 152 TFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFN---GDISIAYTLFNKMF 228 (470)
Q Consensus 152 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~ 228 (470)
.|++..+. .|+.......+..++...|++++|.+.|++..+.... +...+..+...+... |++++|.+.+++..
T Consensus 79 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 77777663 2433333333333334555566666666666654422 455566666666666 66666666666665
Q ss_pred HCC
Q 012126 229 ERG 231 (470)
Q Consensus 229 ~~~ 231 (470)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 554
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.82 E-value=1.2e-07 Score=93.41 Aligned_cols=149 Identities=10% Similarity=-0.101 Sum_probs=62.3
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012126 182 LRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLED 261 (470)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 261 (470)
+++|...|++..+.... +...+..+...+...|++++|.+.|++..+.... +...+..+..+|...|++++|++.+++
T Consensus 5 ~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ----------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444444444333211 3444444445555555555555555554443322 344444444555555555555555555
Q ss_pred HHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHhHHHHHHHhchh
Q 012126 262 MLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCRE---GRAIDACKVLEDMPS 334 (470)
Q Consensus 262 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~ 334 (470)
..+.... +...+..+..+|.+.|++++|.+.+++..+.. +.+...+..+...+... |++++|.+.+++..+
T Consensus 83 al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 83 ASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 4443322 34444444455555555555555555544431 12334444444444444 555555555554444
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.81 E-value=4.8e-08 Score=88.05 Aligned_cols=223 Identities=14% Similarity=0.014 Sum_probs=151.3
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 012126 180 NYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCF-NGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDL 258 (470)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 258 (470)
|++++|.+++++..+... . .+.. .++++.|...|.+. ...|...|++++|...
T Consensus 5 ~~~~eA~~~~~~a~k~~~--~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLK--T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHC--C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHcc--c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 346667777766654311 1 1222 46667766666654 4567788999999999
Q ss_pred HHHHHhCCC----CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHhHHHHH
Q 012126 259 LEDMLNKGF----VP-DTLSYTTLLNSLCRKKKLREAYKLLCRMKVK----GCNP-DIVHYNTVVLGFCREGRAIDACKV 328 (470)
Q Consensus 259 ~~~~~~~~~----~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~ 328 (470)
|.+..+... .. -..+|+.+..+|.+.|++++|...|++..+. |-.. ...+++.+...|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 988765321 11 1357888888999999999999999987653 2111 13567778888888 999999999
Q ss_pred HHhchhCCCCC-C----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCCHHHHHHH
Q 012126 329 LEDMPSNGCLP-N----LVSYRTLVGGLCDQGMFDVAKKYMQLMISK----GFSPH-FSVSHALIKGFCNVGKVDEACGV 398 (470)
Q Consensus 329 ~~~m~~~~~~p-~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~ 398 (470)
|++..+..... + ..++..+...+...|++++|+..+++..+. +..+. ...+..+..++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99876531111 1 456778888999999999999999988763 21111 22566677778888999999999
Q ss_pred HHHHHHCCCCCCHH------HHHHHHHHHHcCCcHHHHHHH
Q 012126 399 LEELLKAGEAPHED------TWVMIVPQICAGEEMEKLGEV 433 (470)
Q Consensus 399 ~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~a~~~ 433 (470)
|++.+ .. |+.. ....++.++ ..|+.+.+.++
T Consensus 218 ~~~al-~~--p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SI--PGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TS--TTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CC--CCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99988 43 4321 234455544 56777766664
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.81 E-value=7.1e-06 Score=73.78 Aligned_cols=223 Identities=11% Similarity=0.035 Sum_probs=105.8
Q ss_pred HccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-CchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhh
Q 012126 106 GRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESN-LPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRP 184 (470)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 184 (470)
.+....++|.++++.+.... |-+..+|+.--.++...| .+++++++++.+...+ |.
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PK-------------------- 121 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LK-------------------- 121 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CC--------------------
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CC--------------------
Confidence 33444456777777777665 556666666666665556 3666666666665532 22
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH--------H
Q 012126 185 AFDLFKSAHKHGVLPNTKSYNIMMRAFCFN-G-DISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVN--------R 254 (470)
Q Consensus 185 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--------~ 254 (470)
+..+|+.-...+... + ++++++++++++.+...+ +..+|+--.-.+.+.|.++ +
T Consensus 122 ---------------ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~e 185 (349)
T 3q7a_A 122 ---------------SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGS 185 (349)
T ss_dssp ---------------CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred ---------------cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHH
Confidence 333333333222222 2 344444444444444322 3344433333333333333 5
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-----
Q 012126 255 AVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKK-------LREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRA----- 322 (470)
Q Consensus 255 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~----- 322 (470)
+++.++++.+..+. |..+|+.....+.+.+. ++++++.+++..... +-|...|+-+-..+.+.|+.
T Consensus 186 ELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~ 263 (349)
T 3q7a_A 186 ELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPIL 263 (349)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCccccc
Confidence 55555555555443 55555555555544443 455666665555542 22455555544444444432
Q ss_pred ---------------hHHHHHHHhchhCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012126 323 ---------------IDACKVLEDMPSNG-----CLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMIS 369 (470)
Q Consensus 323 ---------------~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 369 (470)
.+..++..++...+ -.++...+..++..|...|+.++|.++++.+.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 264 PAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 12222222222211 023445555555566666666666666665543
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.77 E-value=2e-06 Score=76.81 Aligned_cols=125 Identities=10% Similarity=0.087 Sum_probs=60.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-CC----HhhHHHH
Q 012126 208 MRAFCFNGDISIAYTLFNKMFERGV-MPDV----ESYRILMQGLCRKSQVNRAVDLLEDMLNKGFV-PD----TLSYTTL 277 (470)
Q Consensus 208 i~~~~~~g~~~~a~~~~~~m~~~~~-~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 277 (470)
+..+...|++++|.+++++..+... .|+. ..+..+...+...+++++|+..+++..+.... .+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4555666666666666666655321 1111 12223444444455666666666666553221 11 1245555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHhc
Q 012126 278 LNSLCRKKKLREAYKLLCRMKVK-----GCNPD-IVHYNTVVLGFCREGRAIDACKVLEDM 332 (470)
Q Consensus 278 l~~~~~~~~~~~a~~~~~~m~~~-----~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m 332 (470)
..+|...|++++|...|++..+. +..+. ..+|..+...|.+.|++++|+..+++.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 55666666666666666555421 00111 123444444455555555555544443
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.75 E-value=2.1e-07 Score=83.80 Aligned_cols=121 Identities=12% Similarity=0.014 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCCC-H
Q 012126 202 KSYNIMMRAFCFNGDISIAYTLFNKMFERGVMP-----DVESYRILMQGLCRKSQVNRAVDLLEDMLNK----GFVPD-T 271 (470)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~ 271 (470)
.+++.+...|.. |++++|+..|++..+..... ...++..+...|...|++++|+..|++..+. +..+. .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 455566666666 77777777776655431100 1345666677777777777777777766542 11111 1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCHhHHHH
Q 012126 272 LSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPD------IVHYNTVVLGFCREGRAIDACK 327 (470)
Q Consensus 272 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~ 327 (470)
..+..+..++...|++++|...|++.. . .|+ ......++.++ ..|+.+.+.+
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 245555666666677777777777766 3 221 11233444444 4566655555
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.75 E-value=6.1e-07 Score=75.79 Aligned_cols=128 Identities=12% Similarity=-0.030 Sum_probs=87.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 012126 273 SYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLC 352 (470)
Q Consensus 273 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 352 (470)
.+..+...+...|++++|...|++.. .|+...|..+...|.+.|++++|+..+++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34455666677777777777777663 4566777777777777777777777777776643 235566777777777
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 012126 353 DQGMFDVAKKYMQLMISKGFSPH----------------FSVSHALIKGFCNVGKVDEACGVLEELLKAG 406 (470)
Q Consensus 353 ~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (470)
..|++++|...+++..+.. +.+ ...+..+..+|...|++++|.+.|++.++..
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 7777777777777777642 111 2566667777777777777777777777643
No 120
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.73 E-value=9.4e-06 Score=73.01 Aligned_cols=222 Identities=12% Similarity=0.018 Sum_probs=146.8
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-C-ChHH
Q 012126 178 HRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNG-DISIAYTLFNKMFERGVMPDVESYRILMQGLCRK-S-QVNR 254 (470)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~-~~~~ 254 (470)
..+..++|++++++++..... +..+|+.--..+...| .++++++.++.+.....+ +..+|+.-...+... + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHH
Confidence 445567788888888876644 6777888777777778 599999999999988766 788888877777776 7 8899
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----
Q 012126 255 AVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLR--------EAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGR----- 321 (470)
Q Consensus 255 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~----- 321 (470)
++++++.+.+...+ |..+|+.-.-++.+.|.++ ++++.++++.+.. .-|...|+.....+.+.++
T Consensus 144 EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 99999999987665 7777776555555555544 7888888887764 3367777777777766665
Q ss_pred --HhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCCh--------------------HHHHHHHHHHHHCC-----CCC
Q 012126 322 --AIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMF--------------------DVAKKYMQLMISKG-----FSP 374 (470)
Q Consensus 322 --~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~~ 374 (470)
++++++.++++.... +-|...|+.+-..+.+.|+. ........++...+ -.+
T Consensus 222 ~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 567777777776643 23566666655555555443 11112211221111 023
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 012126 375 HFSVSHALIKGFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (470)
.......+++.|...|+.++|.++++.+.+
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 455555666666666666666666666653
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.70 E-value=2.5e-06 Score=76.12 Aligned_cols=163 Identities=9% Similarity=0.009 Sum_probs=91.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHhHHHHHHHhchhCCC---CCC--HHHHHH
Q 012126 277 LLNSLCRKKKLREAYKLLCRMKVKGCNPD-----IVHYNTVVLGFCREGRAIDACKVLEDMPSNGC---LPN--LVSYRT 346 (470)
Q Consensus 277 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~ 346 (470)
.+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|+..+++..+... .+. ..+|+.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34445555556655555555444311100 01122344445566677777776666554211 111 335666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC----CCC-CHHHHH
Q 012126 347 LVGGLCDQGMFDVAKKYMQLMIS---K-GFSP--HFSVSHALIKGFCNVGKVDEACGVLEELLKAG----EAP-HEDTWV 415 (470)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~~~~---~-~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~p-~~~~~~ 415 (470)
+...|...|++++|...+++..+ . +..+ ...++..+...|...|++++|.+.+++.++.. ... -..+|.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 66777777777777777776652 1 1111 11466677777777777777777777765421 111 145667
Q ss_pred HHHHHHHcCCcHHHH-HHHHHHHHH
Q 012126 416 MIVPQICAGEEMEKL-GEVLNEIVK 439 (470)
Q Consensus 416 ~l~~~~~~~g~~~~a-~~~~~~m~~ 439 (470)
.+..+|.+.|++++| ...+++.+.
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 777777777777777 666666653
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.70 E-value=1.5e-06 Score=73.25 Aligned_cols=127 Identities=11% Similarity=-0.085 Sum_probs=81.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 012126 204 YNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCR 283 (470)
Q Consensus 204 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 283 (470)
+..+...+...|++++|...|++.. .|+...+..+..+|...|++++|++.|++..+.... +...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHH
Confidence 4455556666777777777776553 346666777777777777777777777776665432 55666667777777
Q ss_pred cCCHHHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHhcCCHhHHHHHHHhchhC
Q 012126 284 KKKLREAYKLLCRMKVKGCN--------------P-DIVHYNTVVLGFCREGRAIDACKVLEDMPSN 335 (470)
Q Consensus 284 ~~~~~~a~~~~~~m~~~~~~--------------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 335 (470)
.|++++|...|++..+..-. | ....+..+..+|.+.|++++|...|+...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 77777777777776654211 1 1255666666777777777777777776664
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.67 E-value=5.3e-06 Score=73.98 Aligned_cols=167 Identities=7% Similarity=-0.020 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--HH
Q 012126 238 SYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDT-----LSYTTLLNSLCRKKKLREAYKLLCRMKVKGC---NPD--IV 307 (470)
Q Consensus 238 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~~ 307 (470)
.+...+..+...|++++|++.+.+..+.....+. ..+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4444566677777788887777776664322111 1233355556677788888888887764311 111 34
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHhchhC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CH
Q 012126 308 HYNTVVLGFCREGRAIDACKVLEDMPSN-GCLPN-----LVSYRTLVGGLCDQGMFDVAKKYMQLMISK----GFSP-HF 376 (470)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~ 376 (470)
+|+.+...|...|++++|+..+++..+. ...|+ ..++..+...|...|++++|...+++.++. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7777888888888888888888877621 00122 257777888888999999999998887653 1111 15
Q ss_pred HHHHHHHHHHHccCCHHHH-HHHHHHHHH
Q 012126 377 SVSHALIKGFCNVGKVDEA-CGVLEELLK 404 (470)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a-~~~~~~~~~ 404 (470)
.+|..+..+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788888899999999999 777777643
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.63 E-value=1.7e-06 Score=69.61 Aligned_cols=128 Identities=11% Similarity=-0.057 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 012126 202 KSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSL 281 (470)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 281 (470)
..+..+...+...|++++|...|++..+.... +..++..+..++...|++++|++.+++..+.... +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 34555666666677777777777766655332 4566666666666667777777766666655332 455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHhHHHHHHHhc
Q 012126 282 CRKKKLREAYKLLCRMKVKGCNPDIVHYN--TVVLGFCREGRAIDACKVLEDM 332 (470)
Q Consensus 282 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m 332 (470)
...|++++|...+++..+.. +.+...+. ..+..+...|++++|+..+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66666666666666665542 11233332 2222344556666666555543
No 125
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.63 E-value=7.2e-05 Score=71.73 Aligned_cols=317 Identities=7% Similarity=-0.086 Sum_probs=190.0
Q ss_pred CCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-chhHHHHHHHHHh-CCCcc-CHHHHHHHHHHHHh---cCCCh
Q 012126 109 KYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNL-PDRALKTFRSMLE-FNCKP-LPKQLNRILELLVT---HRNYL 182 (470)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~-~~~~p-~~~~~~~ll~~~~~---~~~~~ 182 (470)
++++.+..+|++....- |+..+|..-+....+.+. .+....+|+..+. .|..| +...|...+..+.. ..+..
T Consensus 28 ~~~e~~~~iferal~~~--ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS--YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 88999999999998853 599999998888777763 4667788888765 34333 55666666655421 12347
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------------hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 012126 183 RPAFDLFKSAHKHGVLPNTKSYNIMMRAFC-------------FNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRK 249 (470)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------------~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 249 (470)
+.+..+|++.+.....--...|......-. ..+.+..|..+++.+...-...+...|...+..-...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 789999999987432211223332222111 1123334454554443210011334555544432221
Q ss_pred --CC-----hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 012126 250 --SQ-----VNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRA 322 (470)
Q Consensus 250 --~~-----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 322 (470)
+- .+.+..+|++++..... +...|-..+..+.+.|+.+.|..++++.... +.+...|. .|......
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~p~-~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~ 258 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSFYY-AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDE 258 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTC
T ss_pred CccCcchhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcch
Confidence 11 34567889998876433 5778888888888999999999999999887 33333332 23322222
Q ss_pred hHHH-HHHHhchhCC-----CCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCH
Q 012126 323 IDAC-KVLEDMPSNG-----CLP---NLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCN-VGKV 392 (470)
Q Consensus 323 ~~a~-~~~~~m~~~~-----~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~ 392 (470)
++.. .+.+...... ..+ ....|...+....+.++.+.|..+|+.+ +.. ..+..+|......-.. .++.
T Consensus 259 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~ 336 (493)
T 2uy1_A 259 EAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSR 336 (493)
T ss_dssp THHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCS
T ss_pred hHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCCh
Confidence 2221 1222111000 001 1245666666666788899999999999 321 2344455433322222 3369
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 012126 393 DEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEI 437 (470)
Q Consensus 393 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 437 (470)
+.|..+|+..++.. .-+...|...++...+.|+.+.|..+|+.+
T Consensus 337 ~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 337 ATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998753 234566777788778889999999888876
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.63 E-value=1.8e-06 Score=69.48 Aligned_cols=130 Identities=12% Similarity=-0.006 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012126 307 VHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGF 386 (470)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 386 (470)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 445666677777888888888888776643 2356777777888888888888888888887753 44567788888888
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHcCCcHHHHHHHHHHHHH
Q 012126 387 CNVGKVDEACGVLEELLKAGEAPHEDTWVMI--VPQICAGEEMEKLGEVLNEIVK 439 (470)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~a~~~~~~m~~ 439 (470)
...|++++|...|++..+... .+...+..+ +..+...|++++|.+.+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888899999998888877542 244555333 3336778889999888887754
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.62 E-value=3.5e-06 Score=73.23 Aligned_cols=196 Identities=11% Similarity=0.000 Sum_probs=121.8
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHHcCChHHHHHHHHHHHhCCCCCC---------------
Q 012126 213 FNGDISIAYTLFNKMFERGVMPDVESYRIL-------MQGLCRKSQVNRAVDLLEDMLNKGFVPD--------------- 270 (470)
Q Consensus 213 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 270 (470)
..++...|.+.|.+..+..+. ....|..+ ...+...+...+++..+..... +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 467778888888887776544 56666665 3444454445555544444333 1211
Q ss_pred -------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCC--H
Q 012126 271 -------TLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPN--L 341 (470)
Q Consensus 271 -------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~ 341 (470)
....-.+..++...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1122334566677788888888888776643 433355555567778888888888887655431 111 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 012126 342 VSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPH--FSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVM 416 (470)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 416 (470)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++.... |+...+..
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~a 246 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAA 246 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHH
Confidence 3566677778888888888888888775332243 3355566667778888888888888887744 55333333
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.59 E-value=2.3e-06 Score=65.48 Aligned_cols=97 Identities=13% Similarity=0.075 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 012126 202 KSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSL 281 (470)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 281 (470)
..+......|.+.|++++|++.|++.++.... +..+|..+..+|.+.|++++|++.+++.++.+.. +...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 34555666666666666666666666665433 5566666666666666666666666666665433 455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 012126 282 CRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 282 ~~~~~~~~a~~~~~~m~~~ 300 (470)
...|++++|.+.|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 6666666666666666654
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.59 E-value=3.4e-06 Score=63.87 Aligned_cols=98 Identities=14% Similarity=0.200 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 012126 201 TKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNS 280 (470)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 280 (470)
...+..+...+...|++++|.++|+++.+... .+..++..+...+...|++++|+..++++.+.... +..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 44556666666666777777777766665532 24556666666666666666666666666654322 45555666666
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 012126 281 LCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 281 ~~~~~~~~~a~~~~~~m~~~ 300 (470)
+...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666666554
No 130
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.57 E-value=7.8e-07 Score=74.37 Aligned_cols=84 Identities=7% Similarity=-0.059 Sum_probs=35.0
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHHhcCCH
Q 012126 213 FNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNK----GFV-PDTLSYTTLLNSLCRKKKL 287 (470)
Q Consensus 213 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~ 287 (470)
..|++++|.++++.+.. .......++..+...+...|++++|+..+++..+. +.. ....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555555553333222 11123444445555555555555555555544431 111 1123344444444455555
Q ss_pred HHHHHHHHHH
Q 012126 288 REAYKLLCRM 297 (470)
Q Consensus 288 ~~a~~~~~~m 297 (470)
++|...+++.
T Consensus 83 ~~A~~~~~~a 92 (203)
T 3gw4_A 83 DAARRCFLEE 92 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 131
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.57 E-value=5.6e-07 Score=75.28 Aligned_cols=97 Identities=8% Similarity=-0.064 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCC-CCH
Q 012126 343 SYRTLVGGLCDQGMFDVAKKYMQLMISK----GFSP--HFSVSHALIKGFCNVGKVDEACGVLEELLKA----GEA-PHE 411 (470)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-p~~ 411 (470)
.+..+...+...|++++|...+++..+. +-.+ ....+..+...+...|++++|...+++..+. +.. ...
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444444445555555555555444331 1010 1223444455555555555555555554321 100 001
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 012126 412 DTWVMIVPQICAGEEMEKLGEVLNEIVK 439 (470)
Q Consensus 412 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 439 (470)
.++..+...+...|++++|.+.+++..+
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1234455555556666666655555544
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.56 E-value=4.3e-07 Score=80.58 Aligned_cols=99 Identities=11% Similarity=-0.031 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLN 279 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 279 (470)
+...+..+...+...|++++|...|++..+.... +...|..+..+|.+.|++++|+..+++..+.... +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4556666777777778888888877777766433 6667777777777777888887777777765433 5666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 012126 280 SLCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 280 ~~~~~~~~~~a~~~~~~m~~~ 300 (470)
+|...|++++|...|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777776554
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.55 E-value=3.2e-06 Score=64.62 Aligned_cols=118 Identities=9% Similarity=-0.032 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 012126 201 TKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNS 280 (470)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 280 (470)
...+..+...+...|++++|...|++....... +...+..+..++...|++++|++.+++..+.... +...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 445556666666667777777777666655322 4556666666666666666666666666654322 45556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 012126 281 LCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGR 321 (470)
Q Consensus 281 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 321 (470)
+...|++++|...+++..+.. +.+...+..+..++.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 666666666666666665542 2244455555555555444
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.54 E-value=1.2e-06 Score=71.61 Aligned_cols=118 Identities=10% Similarity=0.134 Sum_probs=67.6
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCh--HHHH
Q 012126 180 NYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQG-LCRKSQV--NRAV 256 (470)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~--~~a~ 256 (470)
|++++|...+++..+... .+...|..+...|...|++++|...|++..+.... +...+..+..+ +...|++ ++|+
T Consensus 24 ~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ---CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred cCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHHH
Confidence 345555555555554432 25556666666666666666666666666554322 45555555555 5566665 6666
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012126 257 DLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 300 (470)
..++++.+.... +...+..+..+|...|++++|...|++..+.
T Consensus 102 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 102 AMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666655332 4455555666666666666666666666554
No 135
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.54 E-value=2.4e-06 Score=65.36 Aligned_cols=95 Identities=13% Similarity=0.029 Sum_probs=57.7
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 012126 179 RNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDL 258 (470)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 258 (470)
.|++++|++.|++.++... .+...|..+..+|.+.|++++|++.|++.++.+.. +...|..+..++...|++++|++.
T Consensus 26 ~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~ 103 (126)
T 4gco_A 26 KGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVAMREWSKAQRA 103 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHCCCHHHHHHH
Confidence 3334444444444444332 25666677777777777777777777777665433 566677777777777777777777
Q ss_pred HHHHHhCCCCCCHhhHHH
Q 012126 259 LEDMLNKGFVPDTLSYTT 276 (470)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~ 276 (470)
|++..+..+. +......
T Consensus 104 ~~~al~l~P~-~~~a~~~ 120 (126)
T 4gco_A 104 YEDALQVDPS-NEEAREG 120 (126)
T ss_dssp HHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHCcC-CHHHHHH
Confidence 7777665433 3434333
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.54 E-value=8.7e-07 Score=70.12 Aligned_cols=96 Identities=7% Similarity=0.017 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012126 343 SYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQIC 422 (470)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 422 (470)
.+..+...+.+.|++++|...|+++++.. +.+...|..+..+|...|++++|...|++.++... -+...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHH
Confidence 44445555556666666666666665542 33455555666666666666666666666655432 13455556666666
Q ss_pred cCCcHHHHHHHHHHHHHc
Q 012126 423 AGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 423 ~~g~~~~a~~~~~~m~~~ 440 (470)
..|++++|.+.|++.++.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666543
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.53 E-value=3.1e-06 Score=73.55 Aligned_cols=189 Identities=11% Similarity=-0.074 Sum_probs=112.4
Q ss_pred cCCChHHHHHHHHHhhcCCCCCCCHHHHHHH-------HHHHHccCCchHHHHHHHHHhh------------CCC-----
Q 012126 71 SQSDPLLAKEIFDYASRQPNFRHSNSTYLIL-------ILKLGRAKYFSLIDDILITLKS------------EHY----- 126 (470)
Q Consensus 71 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~------------~~~----- 126 (470)
..+|+..|++.|..+.... +-....|..+ ...+.+.++..++...+..-.. .|.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 5799999999999998765 4567778777 4666666666666555555443 110
Q ss_pred ---CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCC--CH
Q 012126 127 ---PVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLP--NT 201 (470)
Q Consensus 127 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~ 201 (470)
.....+.......+...|++++|.++|+.+...+ |+.. ....+..++...+++++|+..|+...+.. .| ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 0013344556677788888888888888776533 4333 33333334445556677777666443321 11 02
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012126 202 KSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPD--VESYRILMQGLCRKSQVNRAVDLLEDMLNK 265 (470)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 265 (470)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2455566666666666666666666653322132 234445555666666666666666666655
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.53 E-value=2.8e-06 Score=65.29 Aligned_cols=117 Identities=11% Similarity=-0.012 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLN 279 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 279 (470)
+...+..+...+...|++++|...|++..+.... +...+..+..++...|++++|++.+++..+.... +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 4555666666666777777777777766655322 5566666666666666777777766666654332 4556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 012126 280 SLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCRE 319 (470)
Q Consensus 280 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 319 (470)
++.+.|++++|...|++..+.. +.+...+..+..++.+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 6666666666666666665542 11233444444444433
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.53 E-value=4.1e-06 Score=63.40 Aligned_cols=97 Identities=16% Similarity=0.176 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012126 307 VHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGF 386 (470)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 386 (470)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|..+++++.+.. +.+..++..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344444445555555555555555544431 1234444455555555555555555555555432 22344555555555
Q ss_pred HccCCHHHHHHHHHHHHHC
Q 012126 387 CNVGKVDEACGVLEELLKA 405 (470)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~ 405 (470)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 5555555555555555543
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.53 E-value=1.6e-06 Score=68.60 Aligned_cols=98 Identities=17% Similarity=0.024 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 012126 201 TKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNS 280 (470)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 280 (470)
...+..+...+.+.|++++|...|++..+..+. +...|..+..+|...|++++|+..|++..+..+. +...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 445566666666777777777777777666433 5666666777777777777777777776665443 45566666667
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 012126 281 LCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 281 ~~~~~~~~~a~~~~~~m~~~ 300 (470)
|.+.|++++|...|++..+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777776665
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.51 E-value=8e-07 Score=72.66 Aligned_cols=121 Identities=6% Similarity=0.023 Sum_probs=86.4
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHhcCCH--H
Q 012126 212 CFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNS-LCRKKKL--R 288 (470)
Q Consensus 212 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~--~ 288 (470)
...|++++|...+++..+.... +...+..+..+|...|++++|+..|++..+.... +...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 3567788888888887776433 6677888888888888888888888887776443 56667777777 6677887 8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhC
Q 012126 289 EAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSN 335 (470)
Q Consensus 289 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 335 (470)
+|...+++..+.. +.+...+..+...|...|++++|...|+++.+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888877663 234666777777888888888888888887764
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.51 E-value=4.8e-06 Score=73.72 Aligned_cols=194 Identities=7% Similarity=-0.045 Sum_probs=134.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012126 235 DVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVL 314 (470)
Q Consensus 235 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 314 (470)
+...+..+...+...|++++|+..|++..+.... +...+..+..+|.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 5667888889999999999999999999887544 78889999999999999999999999998763 345778889999
Q ss_pred HHHhcCCHhHHHHHHHhchhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 012126 315 GFCREGRAIDACKVLEDMPSNGCLPNL-VSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVD 393 (470)
Q Consensus 315 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 393 (470)
+|...|++++|...|++..+.+ |+. ..+...+....+ ..++. -+..........+..+...+... ..|+.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 9999999999999999877642 211 011111111111 11111 12223333344555554444332 268999
Q ss_pred HHHHHHHHHHHCCCCCCHHHH-HHHHHHHHcC-CcHHHHHHHHHHHHHc
Q 012126 394 EACGVLEELLKAGEAPHEDTW-VMIVPQICAG-EEMEKLGEVLNEIVKV 440 (470)
Q Consensus 394 ~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~-g~~~~a~~~~~~m~~~ 440 (470)
+|.+.+++..+. .|+.... ..+...+.+. +.++++.++|.++.+.
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999888774 4555433 3333334444 6788999999888653
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.49 E-value=2.9e-06 Score=77.32 Aligned_cols=145 Identities=9% Similarity=-0.070 Sum_probs=70.7
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHH
Q 012126 270 DTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVG 349 (470)
Q Consensus 270 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 349 (470)
+...+..+...|.+.|++++|...|++..+.. |+...+ ..+.+..+- . .....|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~-~-------~~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ-A-------LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH-H-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH-H-------HHHHHHHHHHH
Confidence 34556666666666777777777776666542 221000 000000000 0 00234455555
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHH
Q 012126 350 GLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEK 429 (470)
Q Consensus 350 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 429 (470)
++.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...|++.++... -+...+..+..++.+.|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555542 23445555555555555666666665555555321 134455555555555555555
Q ss_pred H-HHHHHHH
Q 012126 430 L-GEVLNEI 437 (470)
Q Consensus 430 a-~~~~~~m 437 (470)
+ ...++.|
T Consensus 283 a~~~~~~~~ 291 (336)
T 1p5q_A 283 REKKLYANM 291 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 5 2334444
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.48 E-value=3.4e-06 Score=64.48 Aligned_cols=118 Identities=11% Similarity=-0.052 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012126 306 IVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKG 385 (470)
Q Consensus 306 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 385 (470)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3445555555666666666666666655532 2245555566666666666666666666666542 2345566666666
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCc
Q 012126 386 FCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEE 426 (470)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 426 (470)
+...|++++|...|++..+... .+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 6666666666666666665431 244555555555555443
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.48 E-value=3.1e-06 Score=65.06 Aligned_cols=98 Identities=11% Similarity=0.000 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012126 306 IVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKG 385 (470)
Q Consensus 306 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 385 (470)
...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3445555555555566666666655555432 1234455555555555666666666666555542 2244555555555
Q ss_pred HHccCCHHHHHHHHHHHHHC
Q 012126 386 FCNVGKVDEACGVLEELLKA 405 (470)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~ 405 (470)
+...|++++|.+.|++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 66666666666666655543
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.48 E-value=9.9e-07 Score=69.74 Aligned_cols=99 Identities=12% Similarity=-0.073 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLN 279 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 279 (470)
+...+..+...+...|++++|...|++....... +...|..+..+|...|++++|+..|++....... +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 4455666777777788888888888777766433 6677777777777888888888888777766543 5566677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 012126 280 SLCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 280 ~~~~~~~~~~a~~~~~~m~~~ 300 (470)
+|...|++++|...|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777788888888877777654
No 147
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.45 E-value=2.6e-06 Score=66.10 Aligned_cols=99 Identities=7% Similarity=-0.044 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012126 340 NLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVP 419 (470)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 419 (470)
+...+..+...+...|++++|...++..++.. +.+...+..+..++...|++++|...+++.++.+. .+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 45556666666666666666666666666543 33455666666666667777777777766666432 24556666666
Q ss_pred HHHcCCcHHHHHHHHHHHHHc
Q 012126 420 QICAGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 420 ~~~~~g~~~~a~~~~~~m~~~ 440 (470)
++...|++++|.+.++++++.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 667777777777777766654
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.44 E-value=4.7e-06 Score=75.88 Aligned_cols=124 Identities=8% Similarity=-0.044 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPD--------------VESYRILMQGLCRKSQVNRAVDLLEDMLNK 265 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 265 (470)
+...+..+...|.+.|++++|...|++..+...... ..+|..+..+|.+.|++++|+..+++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345566666777777777777777777766543321 355666666666666666666666666655
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHH
Q 012126 266 GFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDA 325 (470)
Q Consensus 266 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 325 (470)
... +..++..+..+|...|++++|...|++..+.. +.+...+..+..++.+.|+.++|
T Consensus 226 ~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 DSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 433 45556666666666666666666666665542 22345555555556666665555
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.44 E-value=2.2e-06 Score=67.75 Aligned_cols=96 Identities=13% Similarity=0.021 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012126 307 VHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGF 386 (470)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 386 (470)
..+..+...+.+.|++++|+..|+...... +.+...|..+..+|...|++++|...+++.++.. +.+...+..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 334444455555555555555555554432 1234445555555555555555555555555432 22334445555555
Q ss_pred HccCCHHHHHHHHHHHHH
Q 012126 387 CNVGKVDEACGVLEELLK 404 (470)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~ 404 (470)
...|++++|.+.|++.++
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555544
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.42 E-value=0.00019 Score=64.21 Aligned_cols=137 Identities=6% Similarity=-0.036 Sum_probs=81.0
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012126 178 HRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGD----------ISIAYTLFNKMFERGVMPDVESYRILMQGLC 247 (470)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 247 (470)
.+...++|+.+++.++..++. +..+|+.=-..+...+. +++++.+++.+....++ +..+|+.-...+.
T Consensus 42 ~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~ 119 (331)
T 3dss_A 42 AGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLS 119 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHh
Confidence 444455788888888776543 55666654333333332 45666666666665544 6666666555555
Q ss_pred HcC--ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 012126 248 RKS--QVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKK-LREAYKLLCRMKVKGCNPDIVHYNTVVLGFCR 318 (470)
Q Consensus 248 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 318 (470)
..+ +++++++++..+.+.... |..+|+.-..++...|. ++++++.++.+.+.. +-|...|+.....+..
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred ccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
Confidence 655 366777777777666544 66666665555566666 466666666666653 2355555555444443
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.41 E-value=4.4e-06 Score=67.24 Aligned_cols=99 Identities=10% Similarity=-0.035 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012126 305 DIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIK 384 (470)
Q Consensus 305 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 384 (470)
+...+..+...+.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|+..+++.++.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34566667777777888888888887777643 2256677777777777788888888887777753 335667777777
Q ss_pred HHHccCCHHHHHHHHHHHHHC
Q 012126 385 GFCNVGKVDEACGVLEELLKA 405 (470)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~ 405 (470)
+|...|++++|.+.|++.++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777778888888877777664
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.40 E-value=1.3e-05 Score=61.17 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 012126 202 KSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSL 281 (470)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 281 (470)
..|..+...+.+.|++++|...|++..+.... +...|..+..++.+.|++++|+..+++..+.... +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 34555556666666666666666666655432 5566666666666666666666666666655433 455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 012126 282 CRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 282 ~~~~~~~~a~~~~~~m~~~ 300 (470)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 6666666666666665543
No 153
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.39 E-value=0.00033 Score=62.65 Aligned_cols=127 Identities=7% Similarity=0.050 Sum_probs=82.9
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-hHHHHHH
Q 012126 182 LRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNG--DISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQ-VNRAVDL 258 (470)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~ 258 (470)
+++++.+++.+....++ +..+|+.-.-.+...| .+++++.+++++.+.... |..+|+.-.-.+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 45667777777765543 6777776666666666 377888888888877655 67777766666667777 4788888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 012126 259 LEDMLNKGFVPDTLSYTTLLNSLCRK--------------KKLREAYKLLCRMKVKGCNPDIVHYNTV 312 (470)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~m~~~~~~~~~~~~~~l 312 (470)
+..+.+..+. |..+|+.....+.+. +.++++++.+....... +-|...|+-+
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~ 233 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYH 233 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 8888777655 677776665555544 33566666666665542 2344555433
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.38 E-value=2.5e-06 Score=66.85 Aligned_cols=94 Identities=10% Similarity=-0.119 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012126 344 YRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICA 423 (470)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 423 (470)
+..+...+.+.|++++|...|+.+.+.. +.+...|..+..+|...|++++|...|++.++.+. .+...|..+..+|..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 3334444555555555555555555432 23444555555555555555555555555554331 233445555555555
Q ss_pred CCcHHHHHHHHHHHHH
Q 012126 424 GEEMEKLGEVLNEIVK 439 (470)
Q Consensus 424 ~g~~~~a~~~~~~m~~ 439 (470)
.|++++|.+.++++++
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555553
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.37 E-value=1e-06 Score=73.60 Aligned_cols=97 Identities=12% Similarity=0.037 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 012126 203 SYNIMMRAFCFNGDISIAYTLFNKMFERGVMPD---------------VESYRILMQGLCRKSQVNRAVDLLEDMLNKGF 267 (470)
Q Consensus 203 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 267 (470)
.+..+...+...|++++|...|++..+....-. ...+..+..+|...|++++|+..+++..+...
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 344555555566666666666666555321100 13444444445555555555555555444322
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012126 268 VPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 268 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 300 (470)
. +...+..+..+|...|++++|...|++..+.
T Consensus 120 ~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 120 N-NVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred c-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 2 3444444444455555555555555544443
No 156
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.35 E-value=7.7e-06 Score=60.50 Aligned_cols=99 Identities=10% Similarity=-0.004 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 012126 341 LVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAP--HEDTWVMIV 418 (470)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~ 418 (470)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+++.++.. +. +...|..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3455566677777788888888887777653 3456677777777888888888888888877753 22 466777777
Q ss_pred HHHHcC-CcHHHHHHHHHHHHHcc
Q 012126 419 PQICAG-EEMEKLGEVLNEIVKVE 441 (470)
Q Consensus 419 ~~~~~~-g~~~~a~~~~~~m~~~~ 441 (470)
.++... |++++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 888888 88888888888887543
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=2.8e-05 Score=57.99 Aligned_cols=97 Identities=10% Similarity=-0.033 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 012126 202 KSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSL 281 (470)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 281 (470)
..+..+...+...|++++|...|++....... +...+..+..++...|++++|...+++..+.... +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 34455555555566666666666655554322 4455555555555556666666555555544322 344455555555
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 012126 282 CRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 282 ~~~~~~~~a~~~~~~m~~~ 300 (470)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 5555555555555555543
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.35 E-value=1.2e-05 Score=61.42 Aligned_cols=97 Identities=14% Similarity=0.103 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC--CC----HhhHH
Q 012126 202 KSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFV--PD----TLSYT 275 (470)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 275 (470)
..+..+...+.+.|++++|++.|++.++..+. +...|..+..+|...|++++|++.+++.++.... .+ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34455566666666666666666666655432 4555666666666666666666666665543211 01 12344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 012126 276 TLLNSLCRKKKLREAYKLLCRMKV 299 (470)
Q Consensus 276 ~ll~~~~~~~~~~~a~~~~~~m~~ 299 (470)
.+..++...|++++|++.|++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555555555555555555544
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.34 E-value=1.1e-05 Score=61.52 Aligned_cols=94 Identities=12% Similarity=0.005 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012126 344 YRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICA 423 (470)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 423 (470)
+..+...+.+.|++++|...|++.++.. +.+...|..+..+|.+.|++++|...+++.++.+. .+...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 3334444444455555555554444432 22344444444555555555555555555444321 134444444555555
Q ss_pred CCcHHHHHHHHHHHHH
Q 012126 424 GEEMEKLGEVLNEIVK 439 (470)
Q Consensus 424 ~g~~~~a~~~~~~m~~ 439 (470)
.|++++|.+.+++.++
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555555443
No 160
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=4.1e-05 Score=72.28 Aligned_cols=196 Identities=7% Similarity=-0.089 Sum_probs=98.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCH
Q 012126 209 RAFCFNGDISIAYTLFNKMFERGVMPD----------------VESYRILMQGLCRKSQVNRAVDLLEDMLNKGF-VPDT 271 (470)
Q Consensus 209 ~~~~~~g~~~~a~~~~~~m~~~~~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~ 271 (470)
+.+.+.|++++|.+.|.++.+...... ...+..+...|...|++++|.+.+..+...-. .++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445667777777777777766533211 01245566666667777777666666543211 1111
Q ss_pred h----hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHhchhC----CCC
Q 012126 272 L----SYTTLLNSLCRKKKLREAYKLLCRMKVK----GCNPD-IVHYNTVVLGFCREGRAIDACKVLEDMPSN----GCL 338 (470)
Q Consensus 272 ~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~ 338 (470)
. +.+.+-..+...|+.+.|..+++..... +..+. ..++..+...|...|++++|..+++++... +-.
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 1122222233455666666666655331 11111 234555566666666666666666654432 111
Q ss_pred C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 012126 339 P-NLVSYRTLVGGLCDQGMFDVAKKYMQLMISK--GFSPH----FSVSHALIKGFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 339 p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (470)
+ ....+..++..|...|++++|..++++.... .+..+ ...+..+...+...|++++|...|.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 1234555556666666666666666555431 11111 22344444555556666666666555544
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.33 E-value=9.8e-06 Score=63.38 Aligned_cols=98 Identities=8% Similarity=-0.114 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 012126 201 TKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNS 280 (470)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 280 (470)
...+..+...+...|++++|...|++....+.. +...|..+..++...|++++|+..|++....... +...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 344555566667777777777777777665433 5666666777777777777777777777665443 45566666777
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 012126 281 LCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 281 ~~~~~~~~~a~~~~~~m~~~ 300 (470)
|...|++++|...|+...+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777766554
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.32 E-value=5.7e-06 Score=63.33 Aligned_cols=61 Identities=7% Similarity=0.013 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012126 308 HYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMIS 369 (470)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 369 (470)
.+..+...+.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|+..+++.++
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444555555555555555555544431 11334444445555555555555555554443
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.32 E-value=3.3e-05 Score=57.54 Aligned_cols=96 Identities=15% Similarity=-0.001 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012126 308 HYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFC 387 (470)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 387 (470)
.+..+...+...|++++|...++...... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444455555555555555555554432 1234444555555555555555555555555432 223445555555555
Q ss_pred ccCCHHHHHHHHHHHHHC
Q 012126 388 NVGKVDEACGVLEELLKA 405 (470)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~ 405 (470)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 555555555555555543
No 164
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=3.6e-05 Score=72.69 Aligned_cols=234 Identities=8% Similarity=-0.035 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHhCC-Ccc---CHHHHHHHHHHHHhcCCChhhHHHHHHHHHH----CCCCC-CHH
Q 012126 132 LFTYLIKIYAESNLPDRALKTFRSMLEFN-CKP---LPKQLNRILELLVTHRNYLRPAFDLFKSAHK----HGVLP-NTK 202 (470)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p---~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~ 202 (470)
.+..+...|...|++++|.+.+..+...- ..+ ........+..+....|..+.+..++..... .+..+ -..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 45678888888888888888888765421 111 1223445566666677778888888887653 23222 256
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCC----CC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCCC--H
Q 012126 203 SYNIMMRAFCFNGDISIAYTLFNKMFERG----VM-PDVESYRILMQGLCRKSQVNRAVDLLEDMLNK----GFVPD--T 271 (470)
Q Consensus 203 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~ 271 (470)
++..+...|...|++++|..++++....- -. ....++..++..|...|++++|..++++.... +..+. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 77889999999999999999999876531 11 13567888899999999999999999887642 11111 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHH----HHHHHHHHhcCCHhHHHHHHHhch--hCCCCCCH
Q 012126 272 LSYTTLLNSLCRKKKLREAYKLLCRMKVK----GCNPDIVHY----NTVVLGFCREGRAIDACKVLEDMP--SNGCLPNL 341 (470)
Q Consensus 272 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~----~~li~~~~~~~~~~~a~~~~~~m~--~~~~~p~~ 341 (470)
..+..+...+...|++++|...|.+..+. +........ ..++.+....+..+.....+..-. .....++.
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGI 296 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhh
Confidence 45566677778889999999888776542 211111111 111122223333444444443322 11223445
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHH
Q 012126 342 VSYRTLVGGLCDQGMFDVAKKYMQL 366 (470)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~ 366 (470)
..+..++.++.. +++......+..
T Consensus 297 ~~~~~l~~~~~~-~~l~~~~~~~~~ 320 (434)
T 4b4t_Q 297 DAMKAVAEAYNN-RSLLDFNTALKQ 320 (434)
T ss_dssp HHHHHHHHHHHH-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHh-hhHHHHHHHHHH
Confidence 566666666643 445544444443
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.29 E-value=1.1e-05 Score=61.63 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC--CC----HhhHH
Q 012126 202 KSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFV--PD----TLSYT 275 (470)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 275 (470)
..+..+...+...|++++|...|++..+... .+...+..+..++...|++++|...++++.+.... ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4455566666666666666666666665532 24555666666666666666666666666543211 11 44555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 012126 276 TLLNSLCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 276 ~ll~~~~~~~~~~~a~~~~~~m~~~ 300 (470)
.+..++...|++++|...|++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5556666666666666666666554
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.29 E-value=1.6e-05 Score=66.12 Aligned_cols=130 Identities=9% Similarity=-0.061 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHhchhCCCC-C--------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 012126 308 HYNTVVLGFCREGRAIDACKVLEDMPSNGCL-P--------------NLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGF 372 (470)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p--------------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 372 (470)
.+..+...+...|++++|+..|++..+.... | ....+..+..+|...|++++|...+++.++..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 3444455555566666666666555543111 1 02566677777788888888888888877753
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHH-HHHHHHHH
Q 012126 373 SPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLG-EVLNEIVK 439 (470)
Q Consensus 373 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~ 439 (470)
+.+...+..+..+|...|++++|.+.|++.++... -+...+..+..++...++.+++. ..+..|..
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566777777888888888888888888776532 25566777777776666666655 44555543
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.27 E-value=2.7e-05 Score=60.20 Aligned_cols=98 Identities=11% Similarity=-0.024 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLN 279 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 279 (470)
+...+..+...+...|++++|...|++..+.... +...|..+..++...|++++|+..+++..+.... +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 4556666666666666666666666666655432 4556666666666666666666666666654433 4555566666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 012126 280 SLCRKKKLREAYKLLCRMKV 299 (470)
Q Consensus 280 ~~~~~~~~~~a~~~~~~m~~ 299 (470)
+|...|++++|...|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666666544
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.26 E-value=2.7e-05 Score=62.52 Aligned_cols=99 Identities=9% Similarity=-0.072 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLN 279 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 279 (470)
+...+..+...+...|++++|++.|++.++.... +...|..+..+|...|++++|+..|++.++.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4556677777777888888888888887776433 6677777777888888888888888877776543 5667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 012126 280 SLCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 280 ~~~~~~~~~~a~~~~~~m~~~ 300 (470)
+|...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777888888888888777664
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=4.7e-05 Score=59.52 Aligned_cols=98 Identities=12% Similarity=0.016 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 012126 305 DIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPN----LVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSH 380 (470)
Q Consensus 305 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 380 (470)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 3444555555556666666666666665553 233 3455555556666666666666666665542 22445555
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHC
Q 012126 381 ALIKGFCNVGKVDEACGVLEELLKA 405 (470)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~~~~~ 405 (470)
.+..+|...|++++|...|++.++.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5666666666666666666666553
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.23 E-value=1.5e-05 Score=60.30 Aligned_cols=94 Identities=7% Similarity=-0.151 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 012126 344 YRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICA 423 (470)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 423 (470)
+..+...+.+.|++++|...+++.++.. +.+...|..+..++...|++++|...|++.++... -+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 4445666777888888888888887753 34667777777888888888888888888877542 256677778888888
Q ss_pred CCcHHHHHHHHHHHHH
Q 012126 424 GEEMEKLGEVLNEIVK 439 (470)
Q Consensus 424 ~g~~~~a~~~~~~m~~ 439 (470)
.|++++|...++++++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 8888888888888874
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.22 E-value=1.6e-05 Score=60.70 Aligned_cols=97 Identities=12% Similarity=0.075 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHHH
Q 012126 237 ESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGC--NPD----IVHYN 310 (470)
Q Consensus 237 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~ 310 (470)
..+..+...+...|++++|+..|++..+.... +...+..+..++...|++++|...+++...... .++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 44555666666677777777777766655322 455566666666666677666666666654311 011 44455
Q ss_pred HHHHHHHhcCCHhHHHHHHHhchh
Q 012126 311 TVVLGFCREGRAIDACKVLEDMPS 334 (470)
Q Consensus 311 ~li~~~~~~~~~~~a~~~~~~m~~ 334 (470)
.+..++...|++++|.+.|+...+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 555556666666666666665555
No 172
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.21 E-value=9.8e-06 Score=65.00 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 012126 377 SVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVK 439 (470)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 439 (470)
.+|..+..+|.+.|++++|...+++.++.+ +.+...|..+..+|...|++++|...+++.++
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 455556666666666666666666666543 22455666666666666666666666666664
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=4.2e-05 Score=59.83 Aligned_cols=94 Identities=5% Similarity=-0.148 Sum_probs=76.1
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHH
Q 012126 62 PCRVQKLIASQSDPLLAKEIFDYASRQPNFRHS----NSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLI 137 (470)
Q Consensus 62 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 137 (470)
...+...+...++++.|+..|+.+.... |+ ...+..+...+...|++++|...++...... +.+...+..+.
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 106 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHH
Confidence 3445677788999999999999887653 34 5678888888889999999999998887764 55778888888
Q ss_pred HHHHHcCCchhHHHHHHHHHhC
Q 012126 138 KIYAESNLPDRALKTFRSMLEF 159 (470)
Q Consensus 138 ~~~~~~g~~~~A~~~~~~~~~~ 159 (470)
.+|...|++++|...|++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 8999999999999999888773
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.19 E-value=1.7e-05 Score=60.05 Aligned_cols=92 Identities=13% Similarity=-0.016 Sum_probs=50.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 012126 206 IMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKK 285 (470)
Q Consensus 206 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 285 (470)
.+...+.+.|++++|...|++..+.... +...|..+..++...|++++|+..|++..+.... +...+..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 3444555556666666666655554332 4555555555555666666666666555554333 4445555555555556
Q ss_pred CHHHHHHHHHHHHH
Q 012126 286 KLREAYKLLCRMKV 299 (470)
Q Consensus 286 ~~~~a~~~~~~m~~ 299 (470)
++++|...+++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 66666655555544
No 175
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.18 E-value=2.7e-05 Score=57.45 Aligned_cols=97 Identities=12% Similarity=-0.020 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 012126 307 VHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSP--HFSVSHALIK 384 (470)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~ 384 (470)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 334445555555555555555555555432 1234455555556666666666666666665542 22 3555666666
Q ss_pred HHHcc-CCHHHHHHHHHHHHHC
Q 012126 385 GFCNV-GKVDEACGVLEELLKA 405 (470)
Q Consensus 385 ~~~~~-g~~~~a~~~~~~~~~~ 405 (470)
++... |++++|.+.+++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 66666 6666666666666554
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.16 E-value=1.9e-05 Score=60.28 Aligned_cols=89 Identities=9% Similarity=0.053 Sum_probs=38.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 012126 349 GGLCDQGMFDVAKKYMQLMISKGFSPHF---SVSHALIKGFCNVGKVDEACGVLEELLKAGEAPH---EDTWVMIVPQIC 422 (470)
Q Consensus 349 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~ 422 (470)
..+...|++++|...++.+.+.. +.+. ..+..+..++...|++++|...|++.++.... + ...+..+..++.
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHH
Confidence 33444444444444444444421 1111 23334444444455555555555444443211 1 333444444444
Q ss_pred cCCcHHHHHHHHHHHHH
Q 012126 423 AGEEMEKLGEVLNEIVK 439 (470)
Q Consensus 423 ~~g~~~~a~~~~~~m~~ 439 (470)
..|++++|...++++++
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555443
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.15 E-value=8.7e-06 Score=64.79 Aligned_cols=132 Identities=11% Similarity=0.016 Sum_probs=72.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHhchhCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHH
Q 012126 309 YNTVVLGFCREGRAIDACKVLEDMPSNGCL-PN----LVSYRTLVGGLCDQGMFDVAKKYMQLMISK----GFSP-HFSV 378 (470)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~ 378 (470)
+..+...+...|++++|+..+++..+.... ++ ...+..+...+...|++++|...+++..+. +..+ ...+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444445555555555555444332000 01 124455555666666666666666665442 1000 1335
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 012126 379 SHALIKGFCNVGKVDEACGVLEELLKA----GEA-PHEDTWVMIVPQICAGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 440 (470)
+..+...+...|++++|.+.+++.++. +.. .....+..+...+...|++++|.+.+++.++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 556666777777777777777766532 111 11235666777777888888888888777653
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.14 E-value=4e-05 Score=73.31 Aligned_cols=118 Identities=12% Similarity=-0.063 Sum_probs=72.3
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 012126 210 AFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLRE 289 (470)
Q Consensus 210 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 289 (470)
.+.+.|++++|.+.|++..+.... +..+|..+..+|.+.|++++|++.+++..+.... +..++..+..+|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 445667777777777776665332 4666777777777777777777777777766433 55666677777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHhHHHHHHH
Q 012126 290 AYKLLCRMKVKGCNPDIVHYNTVVLG--FCREGRAIDACKVLE 330 (470)
Q Consensus 290 a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~ 330 (470)
|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777766542 1123334444444 666677777777776
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.08 E-value=2.7e-05 Score=61.82 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=12.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 012126 378 VSHALIKGFCNVGKVDEACGVLEELL 403 (470)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~ 403 (470)
++..+...|...|++++|.+.+++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33444444555555555555555443
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.06 E-value=0.00017 Score=54.81 Aligned_cols=92 Identities=17% Similarity=0.051 Sum_probs=49.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC---HhhHHHHHHH
Q 012126 207 MMRAFCFNGDISIAYTLFNKMFERGVMPDV---ESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPD---TLSYTTLLNS 280 (470)
Q Consensus 207 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~ 280 (470)
+...+...|++++|...|++..+.... +. ..+..+..++...|++++|+..|+++.+.... + ..++..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 344455566666666666665554322 11 34445555556666666666666665554322 2 3344455555
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 012126 281 LCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 281 ~~~~~~~~~a~~~~~~m~~~ 300 (470)
+...|++++|...|+.+.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 55566666666666655544
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.04 E-value=7.6e-05 Score=71.00 Aligned_cols=124 Identities=7% Similarity=-0.037 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012126 201 TKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPD--------------VESYRILMQGLCRKSQVNRAVDLLEDMLNKG 266 (470)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 266 (470)
...|..+...|.+.|++++|...|++.++...... ...|..+..+|.+.|++++|+..+++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 44566677777777888888887777766432211 3455555566666666666666666655543
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 012126 267 FVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDAC 326 (470)
Q Consensus 267 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 326 (470)
.. +...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.++.+++.
T Consensus 348 p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 32 45555555556666666666666666655542 113344455555555555555443
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.02 E-value=6.2e-05 Score=71.61 Aligned_cols=88 Identities=10% Similarity=0.012 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012126 342 VSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQI 421 (470)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 421 (470)
..|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...|++.++... -+...+..+..++
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 444555555555566666666555555542 23445555555556666666666666665555321 1233455555555
Q ss_pred HcCCcHHHHH
Q 012126 422 CAGEEMEKLG 431 (470)
Q Consensus 422 ~~~g~~~~a~ 431 (470)
.+.++.+++.
T Consensus 396 ~~~~~~~~a~ 405 (457)
T 1kt0_A 396 KKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.00 E-value=4.7e-06 Score=62.70 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=47.2
Q ss_pred cCCHhHHHHHHHhchhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 012126 319 EGRAIDACKVLEDMPSNGC--LPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEAC 396 (470)
Q Consensus 319 ~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 396 (470)
.|++++|+..|++..+.+. +-+...+..+..+|...|++++|...+++.++.. +-+..++..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4566666666666655421 1123455555666666666666666666666542 234555566666666666666666
Q ss_pred HHHHHHHHC
Q 012126 397 GVLEELLKA 405 (470)
Q Consensus 397 ~~~~~~~~~ 405 (470)
..+++.++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666665553
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.98 E-value=0.00015 Score=57.84 Aligned_cols=99 Identities=12% Similarity=0.065 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHC--------CC---------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012126 201 TKSYNIMMRAFCFNGDISIAYTLFNKMFER--------GV---------MPDVESYRILMQGLCRKSQVNRAVDLLEDML 263 (470)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------~~---------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 263 (470)
...+......+.+.|++++|...|.+.++. .. +.+...|..+..+|.+.|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445667777788888888888888877654 00 1123456666677777777777777777776
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012126 264 NKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 264 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 300 (470)
+.... +...|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 65433 5566666777777777777777777776665
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.95 E-value=1.5e-05 Score=59.95 Aligned_cols=87 Identities=9% Similarity=0.041 Sum_probs=66.2
Q ss_pred cCCChHHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhH
Q 012126 71 SQSDPLLAKEIFDYASRQPN-FRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRA 149 (470)
Q Consensus 71 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 149 (470)
..|+++.|+..|+.+..... -+.+...+..+...+.+.|++++|...+++..+.. |.+..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 35778888999988876520 02345678888888889999999999999888775 66788888889999999999999
Q ss_pred HHHHHHHHh
Q 012126 150 LKTFRSMLE 158 (470)
Q Consensus 150 ~~~~~~~~~ 158 (470)
+..|++...
T Consensus 81 ~~~~~~al~ 89 (117)
T 3k9i_A 81 VELLLKIIA 89 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988776
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.94 E-value=8.6e-05 Score=58.22 Aligned_cols=95 Identities=12% Similarity=0.065 Sum_probs=66.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCC------CC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----CCCC
Q 012126 346 TLVGGLCDQGMFDVAKKYMQLMISKGFS------PH-----FSVSHALIKGFCNVGKVDEACGVLEELLKA-----GEAP 409 (470)
Q Consensus 346 ~li~~~~~~g~~~~a~~~~~~~~~~~~~------~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~p 409 (470)
.....+.+.|++++|+..|++.++.... .+ ...|..+..++.+.|++++|+..+++.++. .+.|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 3344455566666666666665553211 02 237888888888888888888888888774 1145
Q ss_pred CH-HHH----HHHHHHHHcCCcHHHHHHHHHHHHHc
Q 012126 410 HE-DTW----VMIVPQICAGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 410 ~~-~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 440 (470)
+. ..| .....++...|++++|+..|++.++.
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44 477 88888999999999999999999854
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.93 E-value=0.00015 Score=66.82 Aligned_cols=122 Identities=11% Similarity=-0.025 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCC---------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 012126 202 KSYNIMMRAFCFNGDISIAYTLFNKMFERG---------------VMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKG 266 (470)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 266 (470)
..+..+...+.+.|++++|.+.|++.++.- -..+..+|..+..+|.+.|++++|++.+++.++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 446677778888888888888888776520 01123445555555555566666666665555543
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHH
Q 012126 267 FVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDA 325 (470)
Q Consensus 267 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 325 (470)
.. +...+..+..+|...|++++|...|++..+.. +.+...+..+...+...++.+++
T Consensus 304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 22 44455555555555555555555555555441 11333444444444444444433
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.90 E-value=5.1e-05 Score=72.58 Aligned_cols=115 Identities=11% Similarity=-0.001 Sum_probs=82.6
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 012126 178 HRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVD 257 (470)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 257 (470)
..|++++|.+.|++..+.... +...|..+..+|.+.|++++|.+.+++..+.... +..++..+..+|...|++++|++
T Consensus 18 ~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 445677777777777765432 6788888888888899999999999888887543 67788888888888999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHH--HHhcCCHHHHHHHHH
Q 012126 258 LLEDMLNKGFVPDTLSYTTLLNS--LCRKKKLREAYKLLC 295 (470)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~ 295 (470)
.|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 96 ~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 96 DYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 98888876433 34455555555 777788888888887
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.87 E-value=4e-05 Score=69.75 Aligned_cols=148 Identities=16% Similarity=0.060 Sum_probs=84.7
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 012126 271 TLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGG 350 (470)
Q Consensus 271 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 350 (470)
...+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 455677777888889999999999988765 343321 223333444433221 1367778888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHcCCcHH
Q 012126 351 LCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPH-EDTWVMIVPQ-ICAGEEME 428 (470)
Q Consensus 351 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~ 428 (470)
|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++.++.. |+ ...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998863 4467888899999999999999999999987643 43 4455555544 23456778
Q ss_pred HHHHHHHHHHHc
Q 012126 429 KLGEVLNEIVKV 440 (470)
Q Consensus 429 ~a~~~~~~m~~~ 440 (470)
++.+.++.|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 888888888754
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.87 E-value=0.00015 Score=66.84 Aligned_cols=90 Identities=7% Similarity=-0.044 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012126 341 LVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQ 420 (470)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 420 (470)
...|..+..+|.+.|++++|+..++++++.. +.+...+..+..+|...|++++|.+.|++.++... -+...+..+..+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 4566667777777788888888887777653 33566777777777788888888888887776532 245566666666
Q ss_pred HHcCCcHHHHHH
Q 012126 421 ICAGEEMEKLGE 432 (470)
Q Consensus 421 ~~~~g~~~~a~~ 432 (470)
+...++.+++.+
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666655543
No 191
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.83 E-value=0.00083 Score=51.89 Aligned_cols=89 Identities=13% Similarity=0.023 Sum_probs=40.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 012126 207 MMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCR----KSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLC 282 (470)
Q Consensus 207 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 282 (470)
|...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|+++|++..+.| +...+..|..+|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 3333334444444444444444443 33444444444444 444555555555544443 3334444444444
Q ss_pred h----cCCHHHHHHHHHHHHHcC
Q 012126 283 R----KKKLREAYKLLCRMKVKG 301 (470)
Q Consensus 283 ~----~~~~~~a~~~~~~m~~~~ 301 (470)
. .++.++|.+.|++..+.|
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC
Confidence 4 445555555555544443
No 192
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.80 E-value=0.0011 Score=51.19 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=58.6
Q ss_pred CchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHH
Q 012126 145 LPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCF----NGDISIA 220 (470)
Q Consensus 145 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a 220 (470)
++++|++.|++..+.| .|+.. +..++...+..++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~-----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC-----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH-----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh-----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 4455566665555544 22222 4444444444555666666555543 44555555555555 5556666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCC
Q 012126 221 YTLFNKMFERGVMPDVESYRILMQGLCR----KSQVNRAVDLLEDMLNKG 266 (470)
Q Consensus 221 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 266 (470)
.++|++..+.| +...+..|...|.. .++.++|++.|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666655554 44555555555555 555666666666555554
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.79 E-value=0.0012 Score=64.37 Aligned_cols=176 Identities=6% Similarity=-0.053 Sum_probs=121.5
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 012126 178 HRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGD----------ISIAYTLFNKMFERGVMPDVESYRILMQGLC 247 (470)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 247 (470)
.+...++|++.++++...... +..+|+.--..+...|+ ++++++.++++.+...+ +..+|+.-..++.
T Consensus 41 ~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~ 118 (567)
T 1dce_A 41 AGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLS 118 (567)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 344456777777777776543 56667665555555555 78888888888877655 7777777777777
Q ss_pred HcC--ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----
Q 012126 248 RKS--QVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKK-KLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCRE----- 319 (470)
Q Consensus 248 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----- 319 (470)
+.+ +++++++.++++.+.... +..+|+.-..++.+.| .++++.+.++++.+.. +-+...|+.....+.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCC
T ss_pred HcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccc
Confidence 777 568888888888887655 7777777777777777 7888888888877764 33566676666665552
Q ss_pred ---------CCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChH
Q 012126 320 ---------GRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFD 358 (470)
Q Consensus 320 ---------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 358 (470)
+.++++++.+++..... +-|...|..+-..+.+.++.+
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 45678888888877643 235667777666666666533
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.78 E-value=0.004 Score=60.71 Aligned_cols=174 Identities=9% Similarity=-0.020 Sum_probs=119.2
Q ss_pred hcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 012126 213 FNGD-ISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQ----------VNRAVDLLEDMLNKGFVPDTLSYTTLLNSL 281 (470)
Q Consensus 213 ~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 281 (470)
+.|+ -++|++.++++...+.. +..+|+.--.++...|+ ++++++.++.+.+...+ +..+|+.-..++
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3344 45778889888887655 66677766666666666 88888888888887666 777887777777
Q ss_pred HhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhc----
Q 012126 282 CRKK--KLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREG-RAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQ---- 354 (470)
Q Consensus 282 ~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---- 354 (470)
.+.+ +++++.+.++++.+.. +-+...|+.-...+.+.| .++++++.++++.+... -|...|+.....+.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCC
T ss_pred HHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhcccc
Confidence 7888 6788888888888774 336677777777777777 78888888888877643 3566676666555543
Q ss_pred ----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 012126 355 ----------GMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGK 391 (470)
Q Consensus 355 ----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 391 (470)
+.++++.+.+.+++... +-|...|+.+-..+.+.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 33556666666666542 3344555555555555554
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.75 E-value=0.00051 Score=53.85 Aligned_cols=95 Identities=12% Similarity=-0.050 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC------CH-----HHHHHHHHHHHHcCChHHHHHHHHHHHhC------
Q 012126 203 SYNIMMRAFCFNGDISIAYTLFNKMFERGVMP------DV-----ESYRILMQGLCRKSQVNRAVDLLEDMLNK------ 265 (470)
Q Consensus 203 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p------~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------ 265 (470)
.+......+.+.|++++|+..|++.++..... +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34455566667777777777777766653221 11 25555555555556655555555555543
Q ss_pred -CCCCCHhhH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 012126 266 -GFVPDTLSY----TTLLNSLCRKKKLREAYKLLCRMK 298 (470)
Q Consensus 266 -~~~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~m~ 298 (470)
... +...| .....++...|++++|+..|++..
T Consensus 93 ~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 93 LNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp TTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 221 22334 444444455555555555554443
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.71 E-value=9.5e-05 Score=70.40 Aligned_cols=126 Identities=11% Similarity=0.042 Sum_probs=85.4
Q ss_pred HHHhcCCHhHHHHHHHhchhC---CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CC-CCC-HHHHH
Q 012126 315 GFCREGRAIDACKVLEDMPSN---GCLP----NLVSYRTLVGGLCDQGMFDVAKKYMQLMISK-----GF-SPH-FSVSH 380 (470)
Q Consensus 315 ~~~~~~~~~~a~~~~~~m~~~---~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~-~~~~~ 380 (470)
.+...|++++|+.++++..+. -+.| ...+++.|..+|...|++++|+.++++.++. |- .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345678888888877765442 1112 2456788888888888888888888876642 21 122 34677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHH-----CCCC-CC-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 012126 381 ALIKGFCNVGKVDEACGVLEELLK-----AGEA-PH-EDTWVMIVPQICAGEEMEKLGEVLNEIVKV 440 (470)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~~~~-----~~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 440 (470)
.|...|...|++++|+.++++.++ .|.. |+ ..+...+..++...+.+++|..++..+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887653 2422 22 224456666777888888888888888764
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.70 E-value=0.00017 Score=68.68 Aligned_cols=125 Identities=10% Similarity=-0.075 Sum_probs=91.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcC---CC---C-CHHHHHHHHHHHHhcCCHhHHHHHHHhchhC-----CC-CC-CHHHHHH
Q 012126 281 LCRKKKLREAYKLLCRMKVKG---CN---P-DIVHYNTVVLGFCREGRAIDACKVLEDMPSN-----GC-LP-NLVSYRT 346 (470)
Q Consensus 281 ~~~~~~~~~a~~~~~~m~~~~---~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~p-~~~~~~~ 346 (470)
+...|++++|+.++++.++.. +. | ...+++.|...|...|++++|..++++..+- |. .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 556889999999888775531 11 2 2467888889999999999999888876542 21 12 2467888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH-----CCCC-CC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 012126 347 LVGGLCDQGMFDVAKKYMQLMIS-----KGFS-PH-FSVSHALIKGFCNVGKVDEACGVLEELLKA 405 (470)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (470)
|...|...|++++|+.++++..+ .|-. |+ ..+.+.+-.++...+.+++|+.+|+.+.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988765 2321 22 335566677888889999999999988653
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.69 E-value=6.8e-05 Score=55.30 Aligned_cols=63 Identities=11% Similarity=0.110 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012126 237 ESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 237 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 300 (470)
..+..+...+...|++++|++.|++..+.... +...+..+..++.+.|++++|...+++..+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34444445555555555555555555444322 3444555555555555555555555555443
No 199
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.66 E-value=0.00017 Score=65.61 Aligned_cols=148 Identities=8% Similarity=-0.026 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 012126 201 TKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNS 280 (470)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 280 (470)
...+..+...+.+.|++++|...|++..... |+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 3456667777778888888888888877652 22221 112222333322211 1256677777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCC-HHHHHHHHHH-HHhcCChH
Q 012126 281 LCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPN-LVSYRTLVGG-LCDQGMFD 358 (470)
Q Consensus 281 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~-~~~~g~~~ 358 (470)
|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888777652 235667777777888888888888888877664 233 3334433333 23445667
Q ss_pred HHHHHHHHHHHC
Q 012126 359 VAKKYMQLMISK 370 (470)
Q Consensus 359 ~a~~~~~~~~~~ 370 (470)
++..+|..|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 777777777654
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.60 E-value=0.00077 Score=49.99 Aligned_cols=79 Identities=10% Similarity=0.053 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012126 184 PAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDML 263 (470)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 263 (470)
.+...|++..+... .+...+..+...|...|++++|...|++..+.... +...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555555432 25566666666666666666666666666655432 45556666666666666666666666655
Q ss_pred h
Q 012126 264 N 264 (470)
Q Consensus 264 ~ 264 (470)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.58 E-value=6.2e-05 Score=55.53 Aligned_cols=65 Identities=12% Similarity=0.136 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 012126 340 NLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKA 405 (470)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (470)
+...+..+...+...|++++|...+++.++.. +.+...+..+..++...|++++|.+.+++.++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34456666677777777777777777777653 335667777777777778888888887777764
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.51 E-value=0.0012 Score=46.25 Aligned_cols=63 Identities=16% Similarity=0.272 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012126 202 KSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNK 265 (470)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 265 (470)
..+..+...+...|++++|...|++..+.... +...+..+..++...|++++|+..+++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34455555555566666666666555554322 4445555555555555555555555555544
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.48 E-value=0.00096 Score=49.47 Aligned_cols=79 Identities=13% Similarity=0.029 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012126 219 IAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMK 298 (470)
Q Consensus 219 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 298 (470)
.|...|++..+.... +...+..+...|...|++++|+..|++..+.... +...+..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555555554322 4555555666666666666666666665554332 34455555556666666666666665554
Q ss_pred H
Q 012126 299 V 299 (470)
Q Consensus 299 ~ 299 (470)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.42 E-value=0.0017 Score=45.47 Aligned_cols=78 Identities=17% Similarity=0.161 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012126 342 VSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQI 421 (470)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 421 (470)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+... .+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 344455555566666666666666655542 23445555566666666666666666666655431 2344444444444
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.37 E-value=0.00057 Score=53.46 Aligned_cols=46 Identities=11% Similarity=-0.010 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-----------CHHHHHHHHHHHHHc
Q 012126 254 RAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKK-----------KLREAYKLLCRMKVK 300 (470)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-----------~~~~a~~~~~~m~~~ 300 (470)
+|+..|++.++..+. +..+|..+..+|...| ++++|.+.|++..+.
T Consensus 64 eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 64 EAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 455555554444333 3344444444444432 455555555555443
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.31 E-value=0.00034 Score=54.71 Aligned_cols=99 Identities=10% Similarity=-0.076 Sum_probs=77.6
Q ss_pred cCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCc----------hHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 012126 71 SQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYF----------SLIDDILITLKSEHYPVTPSLFTYLIKIY 140 (470)
Q Consensus 71 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 140 (470)
+.+.+++|++.++.+.... +.+...|..+..++...+++ ++|+..|++.++.. |....+|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 4456788999999887654 45788888888888887765 49999999998886 66888999999999
Q ss_pred HHcC-----------CchhHHHHHHHHHhCCCccCHHHHHHHHHH
Q 012126 141 AESN-----------LPDRALKTFRSMLEFNCKPLPKQLNRILEL 174 (470)
Q Consensus 141 ~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 174 (470)
...| ++++|++.|++.++ +.|+...|...+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 8774 78889999988887 45776666655554
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.26 E-value=0.0016 Score=46.94 Aligned_cols=64 Identities=9% Similarity=0.046 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 012126 340 NLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (470)
+...+..+...+...|++++|+..|++.++.. +.+...|..+..+|...|++++|.+.|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45556666666667777777777777766653 22445666666667777777777777666654
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.10 E-value=0.0031 Score=45.31 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLN 264 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 264 (470)
+...+..+...|...|++++|+..|++..+.... +...|..+..+|...|++++|++.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455556666666666666666666666555433 344555566666666666666666655543
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.84 E-value=0.044 Score=56.10 Aligned_cols=153 Identities=11% Similarity=0.042 Sum_probs=87.8
Q ss_pred HHhcCChhHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 012126 211 FCFNGDISIAYT-LFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLRE 289 (470)
Q Consensus 211 ~~~~g~~~~a~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 289 (470)
....+++++|.+ ++..+ + +......++..+.+.|..+.|+++.+.- . .-.......|+++.
T Consensus 609 ~~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~----~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPDQ--------D----QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------H----HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCCc--------c----hheehhhhcCCHHH
Confidence 345677777765 44111 1 0222356666677777777777655211 1 11233455677777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012126 290 AYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMIS 369 (470)
Q Consensus 290 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 369 (470)
|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.. |..+...+...|+.+...++.+....
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 77775443 2567777788888888888888888877654 33344445556666666665555555
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 012126 370 KGFSPHFSVSHALIKGFCNVGKVDEACGVLEEL 402 (470)
Q Consensus 370 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 402 (470)
.|. ++.-..+|.+.|++++|.+++.++
T Consensus 736 ~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 736 TGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp TTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred cCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 431 233334455566666666666544
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.84 E-value=0.003 Score=59.06 Aligned_cols=87 Identities=9% Similarity=0.014 Sum_probs=58.0
Q ss_pred hcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHHHH
Q 012126 353 DQGMFDVAKKYMQLMISK---GFSPH----FSVSHALIKGFCNVGKVDEACGVLEELLKA-----GE-APHE-DTWVMIV 418 (470)
Q Consensus 353 ~~g~~~~a~~~~~~~~~~---~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~~-~~~~~l~ 418 (470)
..|++++|+.++++.++. -+.|+ ..+++.+..+|...|++++|+.++++.++. |. .|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346777777777776542 12222 346777788888888888888888776532 31 1222 3677777
Q ss_pred HHHHcCCcHHHHHHHHHHHHH
Q 012126 419 PQICAGEEMEKLGEVLNEIVK 439 (470)
Q Consensus 419 ~~~~~~g~~~~a~~~~~~m~~ 439 (470)
..|...|++++|..++++.++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888877754
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.80 E-value=0.018 Score=51.87 Aligned_cols=71 Identities=15% Similarity=0.029 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 012126 340 NLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTW 414 (470)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 414 (470)
+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.|++.... .|...+|
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 44455554444444555666666665555543 44444444455555556666666665555553 2444443
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.73 E-value=0.0059 Score=57.12 Aligned_cols=91 Identities=12% Similarity=0.023 Sum_probs=51.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----CC-CCC-HHHH
Q 012126 349 GGLCDQGMFDVAKKYMQLMISK---GFSPH----FSVSHALIKGFCNVGKVDEACGVLEELLKA-----GE-APH-EDTW 414 (470)
Q Consensus 349 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~-~~~~ 414 (470)
..+.+.|++++|+.++++.++. -+.++ ..+++.+..+|...|++++|+.++++.++. |. .|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3444556666666666666542 11122 335666666666667777776666665431 21 112 2255
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHH
Q 012126 415 VMIVPQICAGEEMEKLGEVLNEIVK 439 (470)
Q Consensus 415 ~~l~~~~~~~g~~~~a~~~~~~m~~ 439 (470)
+.|...|...|++++|..+++++++
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6666666677777777766666643
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.71 E-value=0.0054 Score=43.71 Aligned_cols=59 Identities=10% Similarity=0.126 Sum_probs=40.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 012126 347 LVGGLCDQGMFDVAKKYMQLMISKGFSPHFS-VSHALIKGFCNVGKVDEACGVLEELLKAG 406 (470)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (470)
....+...|++++|...++++++.. +.+.. .+..+..+|...|++++|.+.|++.++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3445666777777777777777653 33455 67777777777778888888777777654
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.65 E-value=0.11 Score=44.92 Aligned_cols=84 Identities=12% Similarity=0.059 Sum_probs=43.9
Q ss_pred hHHHHHHHhchhCCCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHH
Q 012126 323 IDACKVLEDMPSNGCLPN---LVSYRTLVGGLCD-----QGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCN-VGKVD 393 (470)
Q Consensus 323 ~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~ 393 (470)
..|..++++..+. .|+ ...|..+...|.+ -|+.++|.+.|++.++.+-.-+..++..+.+.++. .|+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3445555555542 344 3345555555555 26666666666666654211124455555555555 36666
Q ss_pred HHHHHHHHHHHCCCC
Q 012126 394 EACGVLEELLKAGEA 408 (470)
Q Consensus 394 ~a~~~~~~~~~~~~~ 408 (470)
++.+.+++.+.....
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 666666666654433
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.56 E-value=0.026 Score=50.81 Aligned_cols=64 Identities=17% Similarity=0.100 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNK 265 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 265 (470)
+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 55555555555555566666666666666654 45555555556666666666666666665554
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.53 E-value=0.017 Score=54.08 Aligned_cols=92 Identities=11% Similarity=-0.035 Sum_probs=71.1
Q ss_pred HHHHHhcCCHhHHHHHHHhchhCC---CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCC-HHH
Q 012126 313 VLGFCREGRAIDACKVLEDMPSNG---CLPN----LVSYRTLVGGLCDQGMFDVAKKYMQLMISK-----G-FSPH-FSV 378 (470)
Q Consensus 313 i~~~~~~~~~~~a~~~~~~m~~~~---~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~-~~~ 378 (470)
+..+.+.|++++|+.++++..+.. ..|+ ..+++.+..+|...|++++|+.+++++++. | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667899999999998876531 2222 457888999999999999999999987752 2 1222 457
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Q 012126 379 SHALIKGFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (470)
++.|...|...|++++|+.++++.++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999998764
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.53 E-value=0.0046 Score=57.80 Aligned_cols=87 Identities=14% Similarity=0.025 Sum_probs=66.0
Q ss_pred hcCCHhHHHHHHHhchhC---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCC-HHHHHHHH
Q 012126 318 REGRAIDACKVLEDMPSN---GCLPN----LVSYRTLVGGLCDQGMFDVAKKYMQLMISK-----G-FSPH-FSVSHALI 383 (470)
Q Consensus 318 ~~~~~~~a~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~li 383 (470)
..|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|+.++++.++. | -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357888888888876542 12222 467888999999999999999999987752 3 1222 45788899
Q ss_pred HHHHccCCHHHHHHHHHHHHH
Q 012126 384 KGFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~ 404 (470)
..|...|++++|+.++++.++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998764
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.47 E-value=0.015 Score=41.26 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=23.1
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012126 246 LCRKSQVNRAVDLLEDMLNKGFVPDTL-SYTTLLNSLCRKKKLREAYKLLCRMKV 299 (470)
Q Consensus 246 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~ 299 (470)
+...|++++|++.|+++.+.... +.. .+..+..+|...|++++|...|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444444444443222 233 444444444444444444444444443
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.36 E-value=0.03 Score=39.47 Aligned_cols=65 Identities=9% Similarity=-0.045 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 012126 340 NLVSYRTLVGGLCDQGM---FDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKA 405 (470)
Q Consensus 340 ~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (470)
|...+..+..++...++ .++|..++++.++.. +-+......+...+...|++++|...|+++++.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44445555555443332 455566665555542 223444455555555566666666666665553
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.36 E-value=0.097 Score=53.50 Aligned_cols=128 Identities=14% Similarity=0.100 Sum_probs=86.1
Q ss_pred HHHHHcCChHHHHH-HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 012126 244 QGLCRKSQVNRAVD-LLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRA 322 (470)
Q Consensus 244 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 322 (470)
......+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+.-. .-.....+.|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 34456788888877 55221 112233778888899999999987664211 113345678999
Q ss_pred hHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 012126 323 IDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEEL 402 (470)
Q Consensus 323 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 402 (470)
++|+++.+.+ .+...|..+...+.+.|+++.|++.|..+.+ |..+...|...|+.+...++.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 9999997665 3678999999999999999999999998743 233334444455555555444444
Q ss_pred HH
Q 012126 403 LK 404 (470)
Q Consensus 403 ~~ 404 (470)
..
T Consensus 734 ~~ 735 (814)
T 3mkq_A 734 ET 735 (814)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.16 Score=40.31 Aligned_cols=129 Identities=12% Similarity=0.067 Sum_probs=87.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChH
Q 012126 279 NSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFD 358 (470)
Q Consensus 279 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 358 (470)
+.....|+++.|.++.+.+. +...|..|.......|+++-|.+.|..... +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 44556888888888877662 677888999988899999999988888754 344555566678887
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 012126 359 VAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEI 437 (470)
Q Consensus 359 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 437 (470)
+..++-+.....| + ++.-...+...|+++++.++|.+.-+ -| .. +-.....|-.+.|.++.+++
T Consensus 78 ~L~kla~iA~~~g---~---~n~af~~~l~lGdv~~~i~lL~~~~r---~~--eA----~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE---D---FGSMLLNTFYNNSTKERSSIFAEGGS---LP--LA----YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHHHHTTC---HH--HH----HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc---c---HHHHHHHHHHcCCHHHHHHHHHHCCC---hH--HH----HHHHHHcCcHHHHHHHHHHh
Confidence 7777766666554 2 34555556678899999888865422 11 11 11123356677777777766
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.31 E-value=0.22 Score=37.16 Aligned_cols=65 Identities=22% Similarity=0.165 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 012126 342 VSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGE 407 (470)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (470)
..+...+......|.-++..+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34444455555556666666665554332 245555555555666666666666666666555554
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.24 E-value=0.24 Score=36.95 Aligned_cols=67 Identities=12% Similarity=-0.027 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 012126 305 DIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGF 372 (470)
Q Consensus 305 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 372 (470)
+....+..+..+...|.-++..+++.++.. +.+|+......+..+|.+.|+..++.+++.++-+.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 334455566667777777777777777433 2456677777777777777777777777777777765
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.19 E-value=0.015 Score=44.91 Aligned_cols=81 Identities=14% Similarity=0.092 Sum_probs=49.1
Q ss_pred HhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHH
Q 012126 322 AIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQG---MFDVAKKYMQLMISKGFSP--HFSVSHALIKGFCNVGKVDEAC 396 (470)
Q Consensus 322 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~ 396 (470)
...+.+-|.+..+.|. ++..+...+..++++.+ +.+++..++++..+.+ .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445555555555443 55556555666666666 4557777777776653 23 2445555556667777777777
Q ss_pred HHHHHHHH
Q 012126 397 GVLEELLK 404 (470)
Q Consensus 397 ~~~~~~~~ 404 (470)
+.++.+++
T Consensus 92 ~y~~~lL~ 99 (152)
T 1pc2_A 92 KYVRGLLQ 99 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777766
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.97 E-value=0.093 Score=36.87 Aligned_cols=65 Identities=6% Similarity=0.079 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012126 200 NTKSYNIMMRAFCFNGD---ISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNK 265 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 265 (470)
|...+..+..++...++ .++|..++++..+.... +......+...+.+.|++++|+..|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444432222 34555555554444332 3444444444445555555555555554443
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.92 E-value=0.032 Score=40.30 Aligned_cols=66 Identities=15% Similarity=0.077 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 012126 340 NLVSYRTLVGGLCDQGMFDVAKKYMQLMISKG------FSPHFSVSHALIKGFCNVGKVDEACGVLEELLKA 405 (470)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (470)
+..-+..+...+.+.|+++.|...++...+.- -.....++..+..+|.+.|++++|..++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445556666777777777777777766531 1233456666777777777777777777777663
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.88 E-value=0.097 Score=37.64 Aligned_cols=66 Identities=9% Similarity=0.110 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLFNKMFERG------VMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNK 265 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 265 (470)
+...+..|...+...|+++.|...|+...+.- ..+....+..+..++.+.|+++.|+..++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44455566666666677777766666655421 1224455566666666666666666666666554
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.68 E-value=0.053 Score=46.79 Aligned_cols=92 Identities=15% Similarity=0.234 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC-CcH
Q 012126 357 FDVAKKYMQLMISKGFSPH---FSVSHALIKGFCNV-----GKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAG-EEM 427 (470)
Q Consensus 357 ~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~ 427 (470)
...|..++++.++. .|+ ...|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45777778888774 555 56888999999884 99999999999999955222478888889988884 999
Q ss_pred HHHHHHHHHHHHcccc--CCceeee
Q 012126 428 EKLGEVLNEIVKVEIK--GDTRIVE 450 (470)
Q Consensus 428 ~~a~~~~~~m~~~~~~--p~~~~~~ 450 (470)
+++.+++++.+..... |+..+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 9999999999998877 6655444
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.50 E-value=0.093 Score=40.49 Aligned_cols=79 Identities=18% Similarity=0.090 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHcCCcHHHHHH
Q 012126 358 DVAKKYMQLMISKGFSPHFSVSHALIKGFCNVG---KVDEACGVLEELLKAGEAP--HEDTWVMIVPQICAGEEMEKLGE 432 (470)
Q Consensus 358 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~ 432 (470)
..+.+.|.+..+.|. ++..+...+..++++.+ +++++..+|++..+.+ .| +...+..|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344444444444432 45555555555555555 4445666666555533 12 23344444555566666666666
Q ss_pred HHHHHH
Q 012126 433 VLNEIV 438 (470)
Q Consensus 433 ~~~~m~ 438 (470)
+++.++
T Consensus 93 y~~~lL 98 (152)
T 1pc2_A 93 YVRGLL 98 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666665
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.83 Score=36.16 Aligned_cols=101 Identities=10% Similarity=0.115 Sum_probs=58.1
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 012126 211 FCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREA 290 (470)
Q Consensus 211 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 290 (470)
....|+++.|.++.+++ -+...|..|.......|+++-|++.|....+ +..+.-.|.-.|+.++.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34567777777666554 1556677777777777777777776665432 33444445556666665
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhc
Q 012126 291 YKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDM 332 (470)
Q Consensus 291 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 332 (470)
.++-+.....| -++.....+...|+++++.++|.+.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 55544444332 1344444555566777776666553
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.20 E-value=0.3 Score=37.27 Aligned_cols=102 Identities=13% Similarity=0.102 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhcCCH------hHHHHHHHhchhCCCCCCHH----HHHHHHH---HHHhcCChHHHHHHHHHHHHCC
Q 012126 305 DIVHYNTVVLGFCREGRA------IDACKVLEDMPSNGCLPNLV----SYRTLVG---GLCDQGMFDVAKKYMQLMISKG 371 (470)
Q Consensus 305 ~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~----~~~~li~---~~~~~g~~~~a~~~~~~~~~~~ 371 (470)
|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|-.+-- .+...++.++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 555666666666666666 6666666665553 444321 0111100 1122356666666666665431
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 012126 372 FSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEA 408 (470)
Q Consensus 372 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 408 (470)
+-=..+|-....--.+.|++..|.+++...+..+.+
T Consensus 91 -KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 91 -KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp -TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred -HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 111445555555555566666666666666655443
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.92 E-value=0.12 Score=38.26 Aligned_cols=82 Identities=18% Similarity=0.095 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHHHHCCCC-CCHHHHHHHHHHHHcCCcHHHHHH
Q 012126 357 FDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDE---ACGVLEELLKAGEA-PHEDTWVMIVPQICAGEEMEKLGE 432 (470)
Q Consensus 357 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~ 432 (470)
+..+.+.|.+....|. ++..+-..+..++++...... ++.++++..+.+-+ -.....-.|.-++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344444444444332 444555555555555554444 55566655553210 122233344455666666666666
Q ss_pred HHHHHHH
Q 012126 433 VLNEIVK 439 (470)
Q Consensus 433 ~~~~m~~ 439 (470)
+++.+++
T Consensus 96 ~~~~lL~ 102 (126)
T 1nzn_A 96 YVRGLLQ 102 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666663
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.91 E-value=0.73 Score=35.18 Aligned_cols=103 Identities=12% Similarity=0.091 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHhcCCh------hHHHHHHHHHHHCCCCCCHH-HHHHHHH------HHHHcCChHHHHHHHHHHHhCC
Q 012126 200 NTKSYNIMMRAFCFNGDI------SIAYTLFNKMFERGVMPDVE-SYRILMQ------GLCRKSQVNRAVDLLEDMLNKG 266 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~~~~p~~~-~~~~ll~------~~~~~~~~~~a~~~~~~~~~~~ 266 (470)
|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|...+. .+...+|.++|.++|+.+++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 555555555555555666 6666777766653 344311 1111111 1233477888888888886653
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 012126 267 FVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNP 304 (470)
Q Consensus 267 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 304 (470)
-.. ...|......-.+.|++..|.+++......+.+|
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 332 5556666666667888888888888887766443
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.34 E-value=0.46 Score=35.17 Aligned_cols=80 Identities=19% Similarity=0.076 Sum_probs=34.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHhCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 012126 220 AYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNR---AVDLLEDMLNKGFV-PDTLSYTTLLNSLCRKKKLREAYKLLC 295 (470)
Q Consensus 220 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~ 295 (470)
+.+-|.+....|. ++..+-..+..++.++.+... ++.+++++.+.+.. -.....-.|.-++.+.|++++|.+.++
T Consensus 20 ~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 20 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344443333332 344444444445555444433 55555555544210 011122223334555555555555555
Q ss_pred HHHHc
Q 012126 296 RMKVK 300 (470)
Q Consensus 296 ~m~~~ 300 (470)
.+++.
T Consensus 99 ~lL~~ 103 (126)
T 1nzn_A 99 GLLQT 103 (126)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55544
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.16 E-value=8.6 Score=39.35 Aligned_cols=256 Identities=11% Similarity=0.010 Sum_probs=119.4
Q ss_pred HHccCCchHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHHcCCchhHHHHHHHHHhCCC--ccC----HHHHHHHHHH-H
Q 012126 105 LGRAKYFSLIDDILITLKSEHYPVTPSLFT--YLIKIYAESNLPDRALKTFRSMLEFNC--KPL----PKQLNRILEL-L 175 (470)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~ll~~-~ 175 (470)
.+..++.+++..+++.....+-..++.+-. .+.-..+.+|..+++.+.+...+...- .-+ .......+.. +
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 445566666666665544321011222222 233334445555566666665543211 000 1111111111 1
Q ss_pred HhcCCChhhHHHHHHHHHHCCCCCCHHH--HH--HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHc
Q 012126 176 VTHRNYLRPAFDLFKSAHKHGVLPNTKS--YN--IMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQG--LCRK 249 (470)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~ 249 (470)
...+..-+++.+.+..+.... +... .. .|...++-.|+-+....++..+.+.. +..+...+.-+ +...
T Consensus 464 a~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 111111245566666655432 2111 11 22333445566666666666655432 22333333333 3356
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 012126 250 SQVNRAVDLLEDMLNKGFVPDTLSY--TTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACK 327 (470)
Q Consensus 250 ~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 327 (470)
|+.+.+..+.+.+.... .|....- .++.-+|+..|+.....+++..+.... ..++.....+.-++...|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 77777777777766531 2121111 123345667778777777777776542 2223333333334445666666777
Q ss_pred HHHhchhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 012126 328 VLEDMPSNGCLPNLVSYRTLVGGLCDQGMF-DVAKKYMQLMIS 369 (470)
Q Consensus 328 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~ 369 (470)
+++.+.+.+ .|....-..+.-+....|.. .++..++..+..
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 776665543 34433333344444444443 466666766654
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.08 E-value=0.36 Score=48.13 Aligned_cols=52 Identities=21% Similarity=0.177 Sum_probs=32.2
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 012126 385 GFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEI 437 (470)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 437 (470)
-|...|+++-|+++-++.+... +-+..+|..|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445666666666666666532 223556666666677777777666666665
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.54 E-value=0.92 Score=45.22 Aligned_cols=128 Identities=14% Similarity=0.154 Sum_probs=77.2
Q ss_pred HHHHHHHHHHcCC-chhHHHHHHHHHhCCCccCHHHH-H-HHHHHHHhcCCChhhHHHHHHHHHHC------CCC-CCHH
Q 012126 133 FTYLIKIYAESNL-PDRALKTFRSMLEFNCKPLPKQL-N-RILELLVTHRNYLRPAFDLFKSAHKH------GVL-PNTK 202 (470)
Q Consensus 133 ~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~-~-~ll~~~~~~~~~~~~a~~~~~~~~~~------~~~-~~~~ 202 (470)
...++..+...++ .+.|+.+|+++.... |....+ . .++..+......--+|.+++.+..+. ... .+..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 3445555555666 477899999887743 433322 2 22222221222223344444444321 111 1211
Q ss_pred ----------HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012126 203 ----------SYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDML 263 (470)
Q Consensus 203 ----------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 263 (470)
..+.=.+.+...|+++-|+++-++....-+ -+-.+|..|..+|...|+++.|+-.+..+.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122223556678999999999999887643 368899999999999999999999888773
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.40 E-value=3.8 Score=37.46 Aligned_cols=67 Identities=10% Similarity=0.058 Sum_probs=40.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 012126 347 LVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLK-----AGEAPHEDTW 414 (470)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~ 414 (470)
++.++...|+.+++...+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 4555556666666666666665542 44556666666666666666666666665532 3666666543
No 239
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.28 E-value=2.1 Score=29.95 Aligned_cols=47 Identities=15% Similarity=0.044 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhch
Q 012126 287 LREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMP 333 (470)
Q Consensus 287 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 333 (470)
.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++.++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444443
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.85 E-value=2.4 Score=38.76 Aligned_cols=95 Identities=21% Similarity=0.112 Sum_probs=65.3
Q ss_pred CCChHHHHHHHHHhhcC--CCCCCCH------------------HHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHH
Q 012126 72 QSDPLLAKEIFDYASRQ--PNFRHSN------------------STYLILILKLGRAKYFSLIDDILITLKSEHYPVTPS 131 (470)
Q Consensus 72 ~~~~~~a~~~~~~~~~~--~~~~~~~------------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 131 (470)
.+++..|.+.++.+... +.+-++. .....++..+.+.|+++++...+..+.... |.+..
T Consensus 128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~ 206 (388)
T 2ff4_A 128 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREP 206 (388)
T ss_dssp TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 57888888888877542 1111111 112334555667788888888888877665 77888
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHh-----CCCccCHHH
Q 012126 132 LFTYLIKIYAESNLPDRALKTFRSMLE-----FNCKPLPKQ 167 (470)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 167 (470)
.+..+|.++.+.|+..+|++.|+.+.. .|+.|+..+
T Consensus 207 ~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 207 LWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 888899999889998888888887643 467775544
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.50 E-value=5.8 Score=42.21 Aligned_cols=147 Identities=18% Similarity=0.188 Sum_probs=100.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhC----CC---------------
Q 012126 277 LLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSN----GC--------------- 337 (470)
Q Consensus 277 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~--------------- 337 (470)
++..+.+.+..+.+.++..-. +.+...--.+..+|...|++++|.+.|.+.-.. +.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444455556655555433322 234444455667889999999999999875321 00
Q ss_pred ---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 012126 338 ---LPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHF----SVSHALIKGFCNVGKVDEACGVLEELLKAGEAPH 410 (470)
Q Consensus 338 ---~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 410 (470)
..-..-|..++..+.+.+.++.+.++-...++..-..+. ..|..+...+...|++++|...+-.+..... -
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--K 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--C
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--H
Confidence 001234677888899999999999998887764322222 2678889999999999999999988876543 3
Q ss_pred HHHHHHHHHHHHcCCcHHHH
Q 012126 411 EDTWVMIVPQICAGEEMEKL 430 (470)
Q Consensus 411 ~~~~~~l~~~~~~~g~~~~a 430 (470)
......|+..+|+.|..+.-
T Consensus 971 ~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHhCCChhhh
Confidence 66778888888877665554
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.32 E-value=2.6 Score=31.36 Aligned_cols=46 Identities=15% Similarity=0.129 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 012126 359 VAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 359 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (470)
+++.+++++.+.+..-....+-.+.-++.+.|++++|.+..+.+++
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4455555554433111233344444455555555555555555554
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.77 E-value=13 Score=34.68 Aligned_cols=189 Identities=13% Similarity=0.080 Sum_probs=103.9
Q ss_pred CChhHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH----hcC
Q 012126 215 GDISIAYTLFNKMFER-----GVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLC----RKK 285 (470)
Q Consensus 215 g~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~~ 285 (470)
|+++.|.+.+-.+.+. +..-+......++..|...|+++...+.+..+.+..-. .......+++.+. ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 6788888777665532 23445666777888888889988887777665543222 2222333443332 222
Q ss_pred CHHH--HHHHHHHHHH--cC-CCCC---HHHHHHHHHHHHhcCCHhHHHHHHHhchhC--CCCCC---HHHHHHHHHHHH
Q 012126 286 KLRE--AYKLLCRMKV--KG-CNPD---IVHYNTVVLGFCREGRAIDACKVLEDMPSN--GCLPN---LVSYRTLVGGLC 352 (470)
Q Consensus 286 ~~~~--a~~~~~~m~~--~~-~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~li~~~~ 352 (470)
..+. -..+.+.+.. .| +... ......|...|...|++.+|.+++.++... |.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2221 1111111111 01 1111 112345667777788888888888776542 21111 234555666777
Q ss_pred hcCChHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 012126 353 DQGMFDVAKKYMQLMIS----KGFSPH--FSVSHALIKGFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 353 ~~g~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (470)
..+++..|..+++++.. ....|+ ...+...+..+...+++.+|...|.+..+
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 77888888877777642 111222 23455566666777777777777666644
No 244
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.47 E-value=5.5 Score=30.06 Aligned_cols=67 Identities=15% Similarity=0.072 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 012126 338 LPNLVSYRTLVGGLCDQGM---FDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 338 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (470)
.|+..+--.+..++.+..+ ..+++.+++++.+.+..-.....-.+.-++.+.|++++|.++.+.+++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3455444445555555443 335666666666543222333444455566666666666666666666
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.87 E-value=24 Score=37.46 Aligned_cols=168 Identities=13% Similarity=0.041 Sum_probs=96.9
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHh
Q 012126 98 YLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVT 177 (470)
Q Consensus 98 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 177 (470)
...++..+...+..+.+.++...+. .++..--.+..+|..+|++++|.+.|.+.-. |+..+..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~----------- 877 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTS----------- 877 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCC-----------
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccch-----------
Confidence 3456777888899988888766543 3444445577888999999999999987532 1111100
Q ss_pred cCCChhhHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCC
Q 012126 178 HRNYLRPAFDLFKSAHKHG--VLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPD----VESYRILMQGLCRKSQ 251 (470)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~ 251 (470)
.... ..-+..+.... ...-..-|..++..+-+.|.++.+.++-...++....-+ ...|..+.+++...|+
T Consensus 878 ---l~~~-~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ 953 (1139)
T 4fhn_B 878 ---QFAV-LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK 953 (1139)
T ss_dssp ---SCSS-HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC
T ss_pred ---hhhh-hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC
Confidence 0000 00011111111 111234466677777777777777777666554321111 1246677778888888
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 012126 252 VNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLR 288 (470)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 288 (470)
+++|...+-.+.....+ ......|+...|..|..+
T Consensus 954 ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 954 FDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp SGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChh
Confidence 88888777777655433 334555555555555433
No 246
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.83 E-value=23 Score=36.32 Aligned_cols=271 Identities=13% Similarity=0.067 Sum_probs=140.1
Q ss_pred hcCCChHHHHHHHHHhhcCCCCCCCHHHHH--HHHHHHHccCCchHHHHHHHHHhhCCC--CC---CHHHH--HHHHHHH
Q 012126 70 ASQSDPLLAKEIFDYASRQPNFRHSNSTYL--ILILKLGRAKYFSLIDDILITLKSEHY--PV---TPSLF--TYLIKIY 140 (470)
Q Consensus 70 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~---~~~~~--~~li~~~ 140 (470)
...++.+.++.+++......+ ..+..+-. .+.-.++..|..+++..++.......- .- ++.+. ..+.-+.
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~-s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSR-ASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSC-CSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccC-CCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 356777778777776543211 12333322 223334555665677776666554321 00 12111 2232233
Q ss_pred HHcCC-chhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCh
Q 012126 141 AESNL-PDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSY--NIMMRAFCFNGDI 217 (470)
Q Consensus 141 ~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~ 217 (470)
+-.|. -+++.+.+..+....-..........+..+....++-+....++..+.+.. +.... ..+.-++...|+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCG
T ss_pred HhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCCh
Confidence 33343 246667776666532110011112223333334455566677777666532 33333 3333445578999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 012126 218 SIAYTLFNKMFERGVMPDVESYR---ILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLL 294 (470)
Q Consensus 218 ~~a~~~~~~m~~~~~~p~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 294 (470)
+.+..+.+.+.... .| ..-|. ++.-+|+..|+.....+++..+.... ..++.-...+.-++...|+.+.+.+++
T Consensus 541 e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 541 ELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 99999988887642 22 22222 23346778889888877998888652 223332222233344467767777787
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 012126 295 CRMKVKGCNPDIVHYNTVVLGFCREGRA-IDACKVLEDMPSNGCLPNLVSYRTLVGGL 351 (470)
Q Consensus 295 ~~m~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 351 (470)
+.+.+.+ .|.+.--.++..+....|.. .++++++..+... +|..+-...+.++
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIAL 671 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHH
Confidence 7776653 44444444444455555554 5788888888753 4544443333333
No 247
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.80 E-value=3.7 Score=30.54 Aligned_cols=47 Identities=15% Similarity=0.056 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchh
Q 012126 288 REAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPS 334 (470)
Q Consensus 288 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 334 (470)
-+..+-++.+....+.|++....+.+++|.+.+++..|.++|+-++.
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33444444444444445555555555555555555555555544443
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.64 E-value=16 Score=33.22 Aligned_cols=241 Identities=7% Similarity=0.040 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHhC-CCcc---CHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHH---
Q 012126 132 LFTYLIKIYAESNLPDRALKTFRSMLEF-NCKP---LPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSY--- 204 (470)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p---~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--- 204 (470)
....|...|.+.|+.++..+++...... +..| .......++..+....+..+.-.++..+..+..-. +..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3445566666666666666665554321 1111 12233444555544444444444444443321100 11122
Q ss_pred ---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhC--CCCCCHhhH
Q 012126 205 ---NIMMRAFCFNGDISIAYTLFNKMFERGVMPD-----VESYRILMQGLCRKSQVNRAVDLLEDMLNK--GFVPDTLSY 274 (470)
Q Consensus 205 ---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~ 274 (470)
..++..|...|++.+|.+++.++.+.--..| ..++..-+..|...+++.++...+...... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2577888888888888888888766421112 334555667788888888888888776542 122333332
Q ss_pred HHH----HHHHH-hcCCHHHHHHHHHHHHHc-CC--CC---CHHHHHHHHHHHHhcCCHhHHHHHHH-hchhCCCCCCHH
Q 012126 275 TTL----LNSLC-RKKKLREAYKLLCRMKVK-GC--NP---DIVHYNTVVLGFCREGRAIDACKVLE-DMPSNGCLPNLV 342 (470)
Q Consensus 275 ~~l----l~~~~-~~~~~~~a~~~~~~m~~~-~~--~~---~~~~~~~li~~~~~~~~~~~a~~~~~-~m~~~~~~p~~~ 342 (470)
..+ .-++. ..+++..|...|-+..+. .. .| +...|..+.... .++..+.-.++. +....-..|...
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCccHH
Confidence 221 12344 678888887777655321 10 01 122232222222 233233323221 111111235555
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 012126 343 SYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFS 377 (470)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 377 (470)
.+..++.+|. .+++.+...+++.... .+..|..
T Consensus 258 ~l~~L~~a~~-~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 258 AMKSVAEASH-KRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred HHHHHHHHHH-hCCHHHHHHHHHHHHH-HHhcChH
Confidence 5666666543 4667666666655432 2444543
No 249
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.99 E-value=16 Score=32.34 Aligned_cols=19 Identities=0% Similarity=-0.108 Sum_probs=14.3
Q ss_pred HHcCCcHHHHHHHHHHHHH
Q 012126 421 ICAGEEMEKLGEVLNEIVK 439 (470)
Q Consensus 421 ~~~~g~~~~a~~~~~~m~~ 439 (470)
|...++...|..+++...+
T Consensus 197 yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 197 YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 6667788888887777664
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.96 E-value=7.3 Score=29.00 Aligned_cols=65 Identities=8% Similarity=0.082 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 012126 374 PHFSVSHALIKGFCNVGK---VDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIV 438 (470)
Q Consensus 374 ~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 438 (470)
|+..+--.+..++++..+ ..+++.++++..+.+..-....+-.|.-++.+.|++++|.++.+.++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444444444444433 33455555555544311123344445555566666666666666655
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.61 E-value=7.4 Score=27.29 Aligned_cols=47 Identities=13% Similarity=0.124 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 012126 184 PAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFER 230 (470)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 230 (470)
+..+-+..+...+..|++....+.+++|.+.+++..|.++|+-.+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444455555556666666666666666666666666666665544
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.75 E-value=20 Score=31.61 Aligned_cols=167 Identities=10% Similarity=0.031 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCC----hhhHHHHHHHHHHCCCCCCHHHHHHH
Q 012126 132 LFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNY----LRPAFDLFKSAHKHGVLPNTKSYNIM 207 (470)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~l 207 (470)
.|.++..-|.+.+++++|++++..-.. .++ ..++ .|.+.-+++...+.++++|......+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~-----------~ll-----~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ-----------TLL-----RSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HHH-----HTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH-----------HHH-----HCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 345566667788888888887654211 000 1111 23444445555566777777777777
Q ss_pred HHHHHhcCChhH-HHHHHHHHHH----CC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 012126 208 MRAFCFNGDISI-AYTLFNKMFE----RG--VMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNS 280 (470)
Q Consensus 208 i~~~~~~g~~~~-a~~~~~~m~~----~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 280 (470)
+..+.....-+- =.++.+++++ .| ..-|......+...|.+.+++.+|...|- .|-.++...|..++--
T Consensus 101 ~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~e 176 (336)
T 3lpz_A 101 LGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYE 176 (336)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHH
Confidence 777766554221 1223333321 12 23366777788888999999888887762 2334333566555544
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhch
Q 012126 281 LCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMP 333 (470)
Q Consensus 281 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 333 (470)
+...+... .++...-.+++ .|.-.++...|..+++...
T Consensus 177 w~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 177 WYKQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 44433211 11222223333 3455667777776655544
No 253
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=84.63 E-value=0.0023 Score=59.00 Aligned_cols=198 Identities=12% Similarity=0.072 Sum_probs=113.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 012126 64 RVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAES 143 (470)
Q Consensus 64 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 143 (470)
.+++.....+...+|++-|=.+ .|+..|..+|.++.+.|.+++....+...++.. .++.+=+.|+-+|++.
T Consensus 59 ~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 59 QLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKT 129 (624)
T ss_dssp SHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTS
T ss_pred HHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhh
Confidence 4566666667666665543222 244568888888999999999888887666553 3445557788899998
Q ss_pred CCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCC--------------------CCCCHHH
Q 012126 144 NLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHG--------------------VLPNTKS 203 (470)
Q Consensus 144 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~ 203 (470)
++..+-.+++. .|+......+-..|. ..|.++.|.-+|..+.... -.-+..|
T Consensus 130 ~rL~elEefl~-------~~N~A~iq~VGDrcf-~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 130 NRLAELEEFIN-------GPNNAHIQQVGDRCY-DEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp CSSSTTTSTTS-------CCSSSCTHHHHHHHH-HSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred CcHHHHHHHHc-------CCCcccHHHHHHHHH-HccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 88766444332 244444444445555 3333555555554332110 0124556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 012126 204 YNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCR 283 (470)
Q Consensus 204 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 283 (470)
|-.+-.+|...+++..|.-.--.++-. ..-...++..|-..|.+++.+.+++.-... -......|+-|.-.|++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHh
Confidence 666666666666666654433333322 112223455566667777777766665422 12355666666666665
Q ss_pred c
Q 012126 284 K 284 (470)
Q Consensus 284 ~ 284 (470)
-
T Consensus 276 Y 276 (624)
T 3lvg_A 276 F 276 (624)
T ss_dssp S
T ss_pred c
Confidence 4
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.51 E-value=15 Score=31.29 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=41.6
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012126 245 GLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 245 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 300 (470)
...+.|+++++++....-++..+. |...-..++..+|-.|+++.|..-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 345677888888888777777654 7777777888888888888888888777665
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.07 E-value=13 Score=28.06 Aligned_cols=66 Identities=8% Similarity=0.087 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 012126 374 PHFSVSHALIKGFCNVGK---VDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEIVK 439 (470)
Q Consensus 374 ~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 439 (470)
|+..+--.+..++++..+ ..+++.+++++.+.+..-.....-.|.-++.+.|++++|.++.+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444444544443 334555555555433211223334444455666666666666666653
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.96 E-value=23 Score=30.93 Aligned_cols=66 Identities=9% Similarity=-0.069 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH----------------HHHHC--CCCCCHHHH--HHHHHHHHcCCcHHHHHHH
Q 012126 374 PHFSVSHALIKGFCNVGKVDEACGVLE----------------ELLKA--GEAPHEDTW--VMIVPQICAGEEMEKLGEV 433 (470)
Q Consensus 374 ~~~~~~~~li~~~~~~g~~~~a~~~~~----------------~~~~~--~~~p~~~~~--~~l~~~~~~~g~~~~a~~~ 433 (470)
.++.....+...|.+.|++.+|+..|- ...+. |.+-+...| ..++ -|.-.|+...|..+
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL-~yL~l~n~~~A~~~ 210 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVF-NYLFISNISFAHES 210 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-HHHHTTBHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH-HHHHhcCHHHHHHH
Confidence 355666666677777777777666441 11111 321112222 2222 36678899999999
Q ss_pred HHHHHHc
Q 012126 434 LNEIVKV 440 (470)
Q Consensus 434 ~~~m~~~ 440 (470)
++...+.
T Consensus 211 ~~~f~~~ 217 (312)
T 2wpv_A 211 KDIFLER 217 (312)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877543
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.64 E-value=13 Score=27.70 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=33.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012126 185 AFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILM 243 (470)
Q Consensus 185 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 243 (470)
..+-+..+...++.|++....+.+++|.+.+++..|.++|+-.+.+- .+...+|..++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 34444444555666677777777777777777777777776665542 22334455444
No 258
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=81.43 E-value=13 Score=29.98 Aligned_cols=58 Identities=19% Similarity=0.109 Sum_probs=45.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 012126 354 QGMFDVAKKYMQLMISKGFSPH-FSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHE 411 (470)
Q Consensus 354 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 411 (470)
.++...+..+|..|..+|+-.. ...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4446788899999988876544 456777788888899999999999998888777643
No 259
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=81.02 E-value=0.01 Score=54.81 Aligned_cols=212 Identities=14% Similarity=0.109 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 012126 201 TKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNS 280 (470)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 280 (470)
..+|..|.+++...+.+.+|++-|-+ .+ |...|..++.+..+.|.+++-+..+...++. .+ +...=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk---A~---Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~k-e~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK---AD---DPSSYMEVVQAANTSGNWEELVKYLQMARKK-AR-ESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC---CS---CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CC-STTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh---CC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hc-ccccHHHHHHH
Confidence 34566677777777766666654421 11 4455666777777777777777766554443 22 44455567777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCC--------------------CCCC
Q 012126 281 LCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNG--------------------CLPN 340 (470)
Q Consensus 281 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------------------~~p~ 340 (470)
|++.++..+-++++ ..|+..-...+.+-|...|.++.|.-+|..+.... -.-+
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 77766654432222 12444444455555555555555555554432110 0124
Q ss_pred HHHHHHHHHHHHhcCChH------------------------------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 012126 341 LVSYRTLVGGLCDQGMFD------------------------------VAKKYMQLMISKGFSPHFSVSHALIKGFCNVG 390 (470)
Q Consensus 341 ~~~~~~li~~~~~~g~~~------------------------------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 390 (470)
..||-.+-.+|...+++. +.+.+++.-... -.....+|+-|.-.|++-
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY- 276 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF- 276 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-
Confidence 456666666666555544 444444433321 123455666666666655
Q ss_pred CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 012126 391 KVDEACGVLEELLKA-GEAPHEDTWVMIVPQICAGEEMEKLGEVLNE 436 (470)
Q Consensus 391 ~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 436 (470)
++++..+.++..-.+ ++ -.+|++|.+..-|.++.-++..
T Consensus 277 ~PeKlmEHlklf~sriNi-------pKviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 277 KPQKMREHLELFWSRVNI-------PKVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp CTTHHHHHHTTSSSSSCC-------TTTHHHHTTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccH-------HHHHHHHHHHhhHHHHHHHHhc
Confidence 344444444332211 22 1467777777777777766653
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.61 E-value=21 Score=32.97 Aligned_cols=99 Identities=14% Similarity=0.023 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---CCCCCCHhh--H
Q 012126 202 KSYNIMMRAFCFNGDISIAYTLFNKMFERG--VMPDVESYRILMQGLCRKSQVNRAVDLLEDMLN---KGFVPDTLS--Y 274 (470)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~--~ 274 (470)
.+...+...|.+.|+++.|.+.|.++.+.. ..--...+-..++.+...+++..+...+.++.. .+..++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 356778899999999999999999998753 233456777788899999999999999888753 232222211 0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 012126 275 TTLLNSLCRKKKLREAYKLLCRMKVK 300 (470)
Q Consensus 275 ~~ll~~~~~~~~~~~a~~~~~~m~~~ 300 (470)
..-...+...+++..|...|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11111233568899888888776543
No 261
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.43 E-value=9.6 Score=29.64 Aligned_cols=24 Identities=8% Similarity=-0.006 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 012126 344 YRTLVGGLCDQGMFDVAKKYMQLM 367 (470)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~~ 367 (470)
+..+.+++...+++..|...|+..
T Consensus 66 l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 66 LVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH
Confidence 334445555555555555555554
No 262
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.35 E-value=23 Score=28.53 Aligned_cols=57 Identities=16% Similarity=0.129 Sum_probs=45.3
Q ss_pred cCCHhHHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 012126 319 EGRAIDACKVLEDMPSNGCLPN-LVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPH 375 (470)
Q Consensus 319 ~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 375 (470)
.+...++.++|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4447788999999988876544 55677777888889999999999999988877774
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=79.03 E-value=12 Score=29.17 Aligned_cols=94 Identities=9% Similarity=0.070 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHC--C-------
Q 012126 344 YRTLVGGLCDQGMFDVAKKYMQLMISK-GFSPH-------FSVSHALIKGFCNVGKVDEACGVLEELLKA--G------- 406 (470)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~------- 406 (470)
+-.-++.+...|.++.|+-+.+.+... +..++ ..++..+.+++...|++..|...|++.++. .
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 333456677888888888887776542 11233 236677788999999999999999986421 1
Q ss_pred ---------------CCCCHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 012126 407 ---------------EAPHEDTWVMIVPQICAGEEMEKLGEVLNEI 437 (470)
Q Consensus 407 ---------------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 437 (470)
...+.+.-..+..+|.+.+++++|+.+++.+
T Consensus 103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1111233345778899999999999998765
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=78.62 E-value=33 Score=29.96 Aligned_cols=25 Identities=12% Similarity=-0.063 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH
Q 012126 200 NTKSYNIMMRAFCFNGDISIAYTLF 224 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~ 224 (470)
+......+...|.+.|++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 5566666667777777776666655
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.56 E-value=16 Score=33.75 Aligned_cols=97 Identities=14% Similarity=-0.078 Sum_probs=57.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhC---CCCCCHHHHH--
Q 012126 273 SYTTLLNSLCRKKKLREAYKLLCRMKVKG--CNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSN---GCLPNLVSYR-- 345 (470)
Q Consensus 273 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~-- 345 (470)
+...+...|.+.|+++.|.+.+.++...- ..--...+-.+++.+...+++..+...+.+.... +..|+...-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 55667788888888888888888876642 2223455666777777778888887777775432 2222221100
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 012126 346 TLVGGLCDQGMFDVAKKYMQLMIS 369 (470)
Q Consensus 346 ~li~~~~~~g~~~~a~~~~~~~~~ 369 (470)
.-...+...+++..|-+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 011112345667766666665544
No 266
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=73.17 E-value=29 Score=26.55 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=23.4
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHccccC
Q 012126 395 ACGVLEELLKAGEAP-HEDTWVMIVPQICAGEEMEKLGEVLNEIVKVEIKG 444 (470)
Q Consensus 395 a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 444 (470)
+.++|..|...|+-- -...|......+...|++++|.++++..++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444555554443321 22344444444455555555555555555554444
No 267
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=72.88 E-value=26 Score=31.36 Aligned_cols=77 Identities=14% Similarity=0.084 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012126 344 YRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGK--VDEACGVLEELLKAGEAPHEDTWVMIVPQI 421 (470)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 421 (470)
...++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+...+++..+...|+-........+.+.+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 466777788888888888888887432111 23344555555555433 355777777777776654444444444433
No 268
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=72.76 E-value=75 Score=31.18 Aligned_cols=221 Identities=9% Similarity=0.048 Sum_probs=98.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh---
Q 012126 207 MMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCR--- 283 (470)
Q Consensus 207 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--- 283 (470)
....+.-.|+++.|.+.+-.. ...+.+.+.+.+.-| |-+.... .+......-...-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~---gLL~~~~----~lls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASL---KLFKIDS----STRLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHT---TC---------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHc---CCccCCC----cccccCCCcccccHHHHHHHHHHHhh
Confidence 334455567777777766543 122444444433332 2222111 11111000113347778888875
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHhchhCCC-------------CC-C-HHHHHH-
Q 012126 284 KKKLREAYKLLCRMKVKGCNPDI-VHYNTVVLGFCREGRAIDACKVLEDMPSNGC-------------LP-N-LVSYRT- 346 (470)
Q Consensus 284 ~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------------~p-~-~~~~~~- 346 (470)
..+..+|.+.|--+...+.+... ..+..+-......+.++. ++-.+...|. .. | ......
T Consensus 369 ~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~---LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i 445 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFTV---LLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTI 445 (661)
T ss_dssp TTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHH---HHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHH---HcCCcCCCCCcCcchHHHhhcccccccHHHHHHHH
Confidence 57888999888777332100011 112223333344444332 2222211110 11 2 111222
Q ss_pred ---HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHcc---------------CCHHHHHHHHHHHHHC--
Q 012126 347 ---LVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKG-FCNV---------------GKVDEACGVLEELLKA-- 405 (470)
Q Consensus 347 ---li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~---------------g~~~~a~~~~~~~~~~-- 405 (470)
...-+...|++++|..+|....+.. .-..+.|.++.- .... +-...|.++.+.....
T Consensus 446 ~~~aA~~ae~~G~~~dAi~LY~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~ 523 (661)
T 2qx5_A 446 TEQAARRADEDGRIYDSILLYQLAEEYD--IVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAG 523 (661)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCch
Confidence 2334567888888888887653311 112233433322 2211 1123444444443221
Q ss_pred ---CCC-CCHHHHHHHHHH-----HHcCCcHHHHHHHHHHHHHccccCCc
Q 012126 406 ---GEA-PHEDTWVMIVPQ-----ICAGEEMEKLGEVLNEIVKVEIKGDT 446 (470)
Q Consensus 406 ---~~~-p~~~~~~~l~~~-----~~~~g~~~~a~~~~~~m~~~~~~p~~ 446 (470)
.+. .+..|+..|+.. +...|+++.|++.++++ ++-|..
T Consensus 524 ~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L---~llPl~ 570 (661)
T 2qx5_A 524 ISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELL---DLLPFS 570 (661)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT---SCSCC-
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCC
Confidence 222 133456655543 36899999999888875 455644
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=70.65 E-value=22 Score=24.85 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=18.7
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 012126 386 FCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEI 437 (470)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 437 (470)
+.+.|++++|..+.+.+ +.||...|..|.. .+.|-.+++..-+..+
T Consensus 49 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp HHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 44444444444443322 2344444443322 3344444444433333
No 270
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=68.91 E-value=26 Score=31.36 Aligned_cols=80 Identities=18% Similarity=0.121 Sum_probs=52.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHccccCCceeeecccch
Q 012126 378 VSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGE--EMEKLGEVLNEIVKVEIKGDTRIVEAGIGL 455 (470)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~ 455 (470)
....++.-|...|+.++|.+.++++..-... ...+...+..++-+.+ ..+.+.+++..+.+.|+-+...+...+..+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4578888999999999999999999532111 2334455555666544 345678888888877765555544444444
Q ss_pred hhH
Q 012126 456 EDY 458 (470)
Q Consensus 456 ~~~ 458 (470)
.+.
T Consensus 298 l~~ 300 (358)
T 3eiq_C 298 YNE 300 (358)
T ss_dssp HHH
T ss_pred HHh
Confidence 333
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=68.04 E-value=56 Score=27.77 Aligned_cols=118 Identities=15% Similarity=0.033 Sum_probs=71.1
Q ss_pred HHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCCh
Q 012126 103 LKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYL 182 (470)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 182 (470)
..+.+.|+++++++....-++.. |.|...-..|+..+|-.|+++.|.+-++...+. .|+......+...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI------ 75 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLV------ 75 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHH------
Confidence 45677888999988888777775 778888888999999999999999988877763 343322222222211
Q ss_pred hhHHHHHHHHHHCCCCC-----CHHHHHHHHHHHH--hcCChhHHHHHHHHHHHC
Q 012126 183 RPAFDLFKSAHKHGVLP-----NTKSYNIMMRAFC--FNGDISIAYTLFNKMFER 230 (470)
Q Consensus 183 ~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~ 230 (470)
.|+..=.++..-+-.| ...-...|+.+.. ..|+.++|.++-.+..+.
T Consensus 76 -~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 76 -KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -HHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1122222222222111 2223334444443 457888887777766543
No 272
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=67.18 E-value=42 Score=26.03 Aligned_cols=55 Identities=9% Similarity=0.125 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 012126 358 DVAKKYMQLMISKGFSPH-FSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHED 412 (470)
Q Consensus 358 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 412 (470)
+.+..+|..|..+|+-.. ...|......+-..|++.+|.++|+.-++.+-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 335667777777665433 3455566666667777777777777777766665444
No 273
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=67.11 E-value=35 Score=27.88 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=12.6
Q ss_pred HHHhcCChhHHHHHHHHHHHCCC
Q 012126 210 AFCFNGDISIAYTLFNKMFERGV 232 (470)
Q Consensus 210 ~~~~~g~~~~a~~~~~~m~~~~~ 232 (470)
..+..|+.+.+..+++.+.+.|.
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC
Confidence 34455666666666655554443
No 274
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.33 E-value=87 Score=29.01 Aligned_cols=191 Identities=15% Similarity=0.122 Sum_probs=107.2
Q ss_pred CChHHHHHHHHHhh----cCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHH----HHcC
Q 012126 73 SDPLLAKEIFDYAS----RQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIY----AESN 144 (470)
Q Consensus 73 ~~~~~a~~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g 144 (470)
+++..|++.+-.+. ...+...+......++..|...++++...+.+..+.... .........++..+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr-~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH-GQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT-TTSHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhcCC
Confidence 67788877665443 233445677888899999999999999988877765543 12233334444332 2233
Q ss_pred CchhHH--HHHHHHHh--CC-Ccc--CHHHHHHHHHHHHhcCCChhhHHHHHHHHHH--CCCCCC---HHHHHHHHHHHH
Q 012126 145 LPDRAL--KTFRSMLE--FN-CKP--LPKQLNRILELLVTHRNYLRPAFDLFKSAHK--HGVLPN---TKSYNIMMRAFC 212 (470)
Q Consensus 145 ~~~~A~--~~~~~~~~--~~-~~p--~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~~~~~~---~~~~~~li~~~~ 212 (470)
..+... .+.+.+.. .| +.. ...-....|..+....|++.+|.+++..+.. .|.... ...+..-++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 322211 11111110 11 111 1223344455555566778888888877753 221111 345566677777
Q ss_pred hcCChhHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012126 213 FNGDISIAYTLFNKMFE----RGVMPD--VESYRILMQGLCRKSQVNRAVDLLEDMLN 264 (470)
Q Consensus 213 ~~g~~~~a~~~~~~m~~----~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 264 (470)
..+++..|..++.+... ....|+ ...+..++..+...+++.+|-+.|.++..
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 88888888777776532 112222 23345556666677777777777666543
No 275
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=64.28 E-value=8.4 Score=31.76 Aligned_cols=11 Identities=18% Similarity=0.226 Sum_probs=4.9
Q ss_pred HHHHhcCChhH
Q 012126 209 RAFCFNGDISI 219 (470)
Q Consensus 209 ~~~~~~g~~~~ 219 (470)
...+..|+.+-
T Consensus 47 ~~A~~~~~~~~ 57 (240)
T 3eu9_A 47 HWAAINNRIDL 57 (240)
T ss_dssp HHHHHTTCHHH
T ss_pred HHHHHhCCHHH
Confidence 33444555443
No 276
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=63.91 E-value=34 Score=23.88 Aligned_cols=79 Identities=11% Similarity=0.066 Sum_probs=43.5
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 012126 180 NYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLL 259 (470)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 259 (470)
...++|..+-+.+...+. ...+--+=+..+...|++++|..+.+.+ .-||.+.|..|.. .+.|..+++...+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 345666666666666542 1111112234456677777776655433 2566666655433 3666666666666
Q ss_pred HHHHhCC
Q 012126 260 EDMLNKG 266 (470)
Q Consensus 260 ~~~~~~~ 266 (470)
..+...|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 6665554
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=62.02 E-value=17 Score=30.77 Aligned_cols=122 Identities=10% Similarity=0.036 Sum_probs=56.3
Q ss_pred HHHHHhcCCHhHHHHHHHhchhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHH
Q 012126 313 VLGFCREGRAIDACKVLEDMPSNGCLP---NLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSV--SHALIKGFC 387 (470)
Q Consensus 313 i~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~ 387 (470)
+...+..|+.+-+..+++.. |..+ +..-.+.+.. .+..++......+.+.+.+.|..++... -.+.+...+
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~ 227 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEM---GADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTS---CCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence 33445567766555555431 2222 2222233333 3345555555667777777776554221 112333445
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHcCCcHHHHHHHHHHHHHccccCCc
Q 012126 388 NVGKVDEACGVLEELLKAGEAPHE---DTWVMIVPQICAGEEMEKLGEVLNEIVKVEIKGDT 446 (470)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 446 (470)
..|..+-+..+++. .|..++. .-.+.+ ....+.|+. ++.+-+++.|..++.
T Consensus 228 ~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~l-~~A~~~~~~----~i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 228 EKKHLGLVQRLLEQ---EHIEINDTDSDGKTAL-LLAVELKLK----KIAELLCKRGASTDC 281 (285)
T ss_dssp HTTCHHHHHHHHHS---SSCCTTCCCTTSCCHH-HHHHHTTCH----HHHHHHHHHSSCSCC
T ss_pred HcCCHHHHHHHHhc---cCCCccccCCCCCcHH-HHHHHcCcH----HHHHHHHHcCCCCCc
Confidence 56776554444431 3433332 122222 233444544 344555566766654
No 278
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=57.50 E-value=27 Score=30.67 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=7.4
Q ss_pred HHHccCCchHHHHHHH
Q 012126 104 KLGRAKYFSLIDDILI 119 (470)
Q Consensus 104 ~~~~~~~~~~a~~~~~ 119 (470)
..++.|+++.+..+++
T Consensus 31 ~Av~~g~~~~V~~LL~ 46 (337)
T 4g8k_A 31 KAVQNEDVDLVQQLLE 46 (337)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 3344555544444443
No 279
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=56.84 E-value=52 Score=26.79 Aligned_cols=185 Identities=10% Similarity=0.050 Sum_probs=92.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHh---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHH
Q 012126 242 LMQGLCRKSQVNRAVDLLEDMLNKGFVPDTL---SYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVH--YNTVVLGF 316 (470)
Q Consensus 242 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~ 316 (470)
.+...+..|+.+.+..+++.+.+.|..++.. -.+ .+...+..|+.+-+ +.+.+.|..++... -.+.+...
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQT-PLHLAVITTLPSVV----RLLVTAGASPMALDRHGQTAAHLA 86 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCC-HHHHHHHcCCHHHH----HHHHHcCCCccccCCCCCCHHHHH
Confidence 3455567899988888888777666544432 223 34445567776544 44445554443221 11234445
Q ss_pred HhcCCHhHHHHHHHhchhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccC
Q 012126 317 CREGRAIDACKVLEDMPSNGCLP---NLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFS---VSHALIKGFCNVG 390 (470)
Q Consensus 317 ~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g 390 (470)
+..|+.+-+..+++.....++.+ +..-.+.+. ..+..|+.+- ++.+.+.|..++.. .-...+...+..|
T Consensus 87 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~-~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~ 161 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH-VAVNTECQET----VQLLLERGADIDAVDIKSGRSPLIHAVENN 161 (241)
T ss_dssp HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHH-HHHHHTCHHH----HHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHcCCCccccccccCcCCCcHHH-HHHHcCCHHH----HHHHHHcCCCcccccccCCCcHHHHHHHcC
Confidence 57788877777776654221111 222222232 3344566544 44455555444321 1122333445567
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHcCCcHHHHHHHHHHHHHccccCC
Q 012126 391 KVDEACGVLEELLKAGEAPHED---TWVMIVPQICAGEEMEKLGEVLNEIVKVEIKGD 445 (470)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 445 (470)
+.+-+ +.+++.|..++.. -.+. +...+..|+.+ +++.+++.|..++
T Consensus 162 ~~~~v----~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 162 SLSMV----QLLLQHGANVNAQMYSGSSA-LHSASGRGLLP----LVRTLVRSGADSS 210 (241)
T ss_dssp CHHHH----HHHHHTTCCTTCBCTTSCBH-HHHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred CHHHH----HHHHHcCCCCCCcCCCCCCH-HHHHHHcCCHH----HHHHHHhcCCCCC
Confidence 76544 4444556554432 1222 33334455544 4455556666654
No 280
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=54.80 E-value=52 Score=23.04 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 012126 286 KLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQ 365 (470)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 365 (470)
..++|.-+-+-+...+. ...+--+-+..+...|++++|..+.+.+- -||...|..|.. .+.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 44555555555444432 11111111233556677777776666543 466666655533 35566666666665
Q ss_pred HHHHCC
Q 012126 366 LMISKG 371 (470)
Q Consensus 366 ~~~~~~ 371 (470)
.+...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 555544
No 281
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=54.49 E-value=1.2e+02 Score=28.04 Aligned_cols=91 Identities=13% Similarity=0.087 Sum_probs=52.1
Q ss_pred HHHHHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 012126 64 RVQKLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAES 143 (470)
Q Consensus 64 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 143 (470)
.+--+.....+++.|+.+.... |++-....|..-...+...|++++|-++-..... |+-.++.+.+.+-.+=..-
T Consensus 334 ivpyi~~~l~n~~lA~~lA~R~----~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~p 408 (494)
T 1bpo_A 334 IIPYITNVLQNPDLALRMAVRN----NLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQP 408 (494)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHT----TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCT
T ss_pred chhhhhhccCCHHHHHHHHHhc----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCC
Confidence 3334445567777777765533 4455666777777777888888888777655433 2333555554443333333
Q ss_pred CCchhHHHHHHHHHhC
Q 012126 144 NLPDRALKTFRSMLEF 159 (470)
Q Consensus 144 g~~~~A~~~~~~~~~~ 159 (470)
|+..--+.+|..+.+.
T Consensus 409 gq~splL~YF~~Ll~~ 424 (494)
T 1bpo_A 409 GQTSPLLQYFGILLDQ 424 (494)
T ss_dssp TSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcc
Confidence 4444455555555443
No 282
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=53.43 E-value=76 Score=24.57 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=29.3
Q ss_pred HHHHHHHhchhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 012126 324 DACKVLEDMPSNGCLPN-LVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPH 375 (470)
Q Consensus 324 ~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 375 (470)
++.++|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 35556666666554332 34455555555666666666666666666555554
No 283
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=52.92 E-value=63 Score=24.95 Aligned_cols=60 Identities=10% Similarity=0.060 Sum_probs=40.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHcCCcHHHHHHHHHHHHH
Q 012126 379 SHALIKGFCNVGKVDEACGVLEELLKAGEAP--HEDTWVMIVP-Q-----ICAGEEMEKLGEVLNEIVK 439 (470)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~m~~ 439 (470)
|...+..| +.|++-+|.++|++.-.....+ ....|..||+ . ..+.|+...|..++.+.+.
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33333333 4488888888888886654444 4557777777 2 2357888889888888866
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=52.19 E-value=76 Score=24.20 Aligned_cols=53 Identities=11% Similarity=0.087 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCC
Q 012126 147 DRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHGVLP 199 (470)
Q Consensus 147 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~ 199 (470)
+++.++|..|...|+--....+..-...+....|++++|.++|+.-++.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34566666666655555555555555555555555666666666666555544
No 285
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=51.01 E-value=51 Score=27.07 Aligned_cols=53 Identities=17% Similarity=0.168 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 012126 182 LRPAFDLFKSAHKHGVLP-NTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMP 234 (470)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 234 (470)
.+...++|..|...|+-. -...|......+...|++.+|.++|+.-++.+-.|
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 356667777777666533 34556666777777788888888887777776665
No 286
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=50.13 E-value=1.5e+02 Score=26.92 Aligned_cols=291 Identities=9% Similarity=0.045 Sum_probs=135.4
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHhhCC--C--CCCHHHHHHHHHHHHHcCC-chhHHHHHHHHH----hCCCccCHHH
Q 012126 97 TYLILILKLGRAKYFSLIDDILITLKSEH--Y--PVTPSLFTYLIKIYAESNL-PDRALKTFRSML----EFNCKPLPKQ 167 (470)
Q Consensus 97 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~----~~~~~p~~~~ 167 (470)
....+...+.+.|+.++..+++......- + .-.......+++.+....+ .+.-.++..+.. .....--...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666665543220 0 0123344555665554322 222222222222 2110000001
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHH
Q 012126 168 LNRILELLVTHRNYLRPAFDLFKSAHKHGVLP-----NTKSYNIMMRAFCFNGDISIAYTLFNKMFER--GVMPDVESYR 240 (470)
Q Consensus 168 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~ 240 (470)
.+.=+..++-..|++.+|.+++.++.+.=-.. -...+..-++.|...+++.++...+...... .+.+++.+..
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 12223334445666777777777666421111 1344566678888889999998888776532 2223333322
Q ss_pred HH----HHHHH-HcCChHHHHHHHHHHHhC--CCC-C---CHhhHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCCHHH
Q 012126 241 IL----MQGLC-RKSQVNRAVDLLEDMLNK--GFV-P---DTLSYTTLLNSLCRKKKLREAYKLLC-RMKVKGCNPDIVH 308 (470)
Q Consensus 241 ~l----l~~~~-~~~~~~~a~~~~~~~~~~--~~~-~---~~~~~~~ll~~~~~~~~~~~a~~~~~-~m~~~~~~~~~~~ 308 (470)
.+ ...+. ..+++..|...|-+..+. ... | +...|..+.... .++..+...++. .....-..|....
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~pei~~ 258 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGRDIDA 258 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCccHHH
Confidence 21 22344 678888888877765421 011 1 122333222222 223222222221 1111112455555
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCC-CHHHHHHHH
Q 012126 309 YNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKG----FSP-HFSVSHALI 383 (470)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~~~~~li 383 (470)
+..++.+| ..+++.+...++...... +..|...... + ..+++.+...+ +.| ....+..+.
T Consensus 259 l~~L~~a~-~~~dl~~f~~iL~~~~~~-l~~D~~l~~h-~------------~~L~~~Ir~~~L~~i~~pYsrIsl~~iA 323 (394)
T 3txn_A 259 MKSVAEAS-HKRSLADFQAALKEYKKE-LAEDVIVQAH-L------------GTLYDTMLEQNLCRIIEPYSRVQVAHVA 323 (394)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHSTTT-TTTSHHHHHH-H------------HHHHHHHHHHHHHHHHTTCSEEEHHHHH
T ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHHH-HhcChHHHHH-H------------HHHHHHHHHHHHHHHhHhhceeeHHHHH
Confidence 66666665 567787777777765432 4445432111 1 11222222110 111 223444444
Q ss_pred HHHHccCCHHHHHHHHHHHHHCC
Q 012126 384 KGFCNVGKVDEACGVLEELLKAG 406 (470)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~~ 406 (470)
..+.- ..++++..+-+|+..|
T Consensus 324 ~~l~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 324 ESIQL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp HHHTC--CHHHHHHHHHHHHHTT
T ss_pred HHHCc--CHHHHHHHHHHHHHCC
Confidence 44432 5778888888887654
No 287
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=50.09 E-value=63 Score=22.63 Aligned_cols=80 Identities=20% Similarity=0.186 Sum_probs=46.0
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 012126 179 RNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDL 258 (470)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 258 (470)
....++|..+-+.+...+. ...+--+=+..+...|++++|..+.+.+. -||.+.|..|.. .+.|..+++...
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 3346677777776666542 11111122344567777777777665433 567776655543 366777777766
Q ss_pred HHHHHhCC
Q 012126 259 LEDMLNKG 266 (470)
Q Consensus 259 ~~~~~~~~ 266 (470)
+..+...|
T Consensus 92 L~~la~sg 99 (116)
T 2p58_C 92 LNRLARSQ 99 (116)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhCC
Confidence 66665554
No 288
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=50.09 E-value=17 Score=30.76 Aligned_cols=48 Identities=8% Similarity=0.037 Sum_probs=22.1
Q ss_pred HhcCCHhHHHHHHHhchhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHH
Q 012126 317 CREGRAIDACKVLEDMPSNGCLPNLVS--YRTLVGGLCDQGMFDVAKKYM 364 (470)
Q Consensus 317 ~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~ 364 (470)
+..++.....++++.+.+.|..++... -.+.+...+..|+.+-+..++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 345554444555555556655443211 112233344556665444443
No 289
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=48.75 E-value=34 Score=28.10 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 012126 358 DVAKKYMQLMISKGFSPH-FSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPH 410 (470)
Q Consensus 358 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 410 (470)
+.+..+|..|..+|+-.. ...|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 567788888888776544 44667777777888888888888888877766663
No 290
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=47.65 E-value=1e+02 Score=24.44 Aligned_cols=17 Identities=18% Similarity=-0.037 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHHHhcCC
Q 012126 200 NTKSYNIMMRAFCFNGD 216 (470)
Q Consensus 200 ~~~~~~~li~~~~~~g~ 216 (470)
+...-...+..+.+.|.
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 44444444444444444
No 291
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=47.29 E-value=64 Score=26.19 Aligned_cols=67 Identities=16% Similarity=0.245 Sum_probs=42.7
Q ss_pred chHHHHHHHHHhhCCCCCCHHHH--------HHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCC
Q 012126 111 FSLIDDILITLKSEHYPVTPSLF--------TYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRN 180 (470)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~--------~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 180 (470)
++.|..+|+.+.+.. +.+...+ ...+-.|.+.|.+++|.+++++.... .++..-...-|..+.+.++
T Consensus 88 LESAl~v~~~I~~e~-~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~--~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 88 LESAINVLEMIKTEF-TLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK--DPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--CGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC--CCCchHHHHHHHHHHhccC
Confidence 467888888886664 3322221 13456688899999999999988763 3444545555555555554
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=46.92 E-value=95 Score=25.75 Aligned_cols=90 Identities=13% Similarity=0.004 Sum_probs=49.7
Q ss_pred HHHHHHhcCCHhHHHHHHHhchhC--CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012126 312 VVLGFCREGRAIDACKVLEDMPSN--GCLP----NLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKG 385 (470)
Q Consensus 312 li~~~~~~~~~~~a~~~~~~m~~~--~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 385 (470)
-++.+....++++|.+++++..+. +.++ +.......+..-.....-.-+..+.+++ .. ..+.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 467778888888888888876542 2221 1111222222222222233334444444 22 3455556666677
Q ss_pred HHccCCHHHHHHHHHHHHH
Q 012126 386 FCNVGKVDEACGVLEELLK 404 (470)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~ 404 (470)
+.+.|+.++|.++|=+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 7788888888888766544
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=46.68 E-value=1.2e+02 Score=25.04 Aligned_cols=87 Identities=7% Similarity=-0.017 Sum_probs=42.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 012126 208 MRAFCFNGDISIAYTLFNKMFER--GVMP----DVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSL 281 (470)
Q Consensus 208 i~~~~~~g~~~~a~~~~~~m~~~--~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 281 (470)
++.+....++++|.+++++..+. +.+. +.......+..-.....-.-+..+.+++.. ..+.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 45566667777777766655432 1111 111112223332333333333344444422 33445555566677
Q ss_pred HhcCCHHHHHHHHHHH
Q 012126 282 CRKKKLREAYKLLCRM 297 (470)
Q Consensus 282 ~~~~~~~~a~~~~~~m 297 (470)
.+.|+.++|.++|=+.
T Consensus 102 ~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHH
Confidence 7777777777776443
No 294
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.56 E-value=84 Score=23.10 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=11.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHH
Q 012126 241 ILMQGLCRKSQVNRAVDLLEDM 262 (470)
Q Consensus 241 ~ll~~~~~~~~~~~a~~~~~~~ 262 (470)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444555555555555555554
No 295
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=46.45 E-value=72 Score=25.07 Aligned_cols=18 Identities=11% Similarity=0.218 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHCCCCCC
Q 012126 358 DVAKKYMQLMISKGFSPH 375 (470)
Q Consensus 358 ~~a~~~~~~~~~~~~~~~ 375 (470)
....++.+.+++.|..++
T Consensus 91 ~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 91 TGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHHHHHHHHTTCCSS
T ss_pred hhHHHHHHHHHHCCCCCC
Confidence 334455556666655444
No 296
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=46.29 E-value=16 Score=30.66 Aligned_cols=26 Identities=8% Similarity=-0.051 Sum_probs=14.6
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCC
Q 012126 210 AFCFNGDISIAYTLFNKMFERGVMPD 235 (470)
Q Consensus 210 ~~~~~g~~~~a~~~~~~m~~~~~~p~ 235 (470)
..++.|+.+....+++.+.+.|..++
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 34455666666666665555554443
No 297
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=45.40 E-value=2.2e+02 Score=27.64 Aligned_cols=178 Identities=10% Similarity=-0.026 Sum_probs=92.0
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHH----HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHH
Q 012126 250 SQVNRAVDLLEDMLNKGFVPDTLSYTTLLNS----LCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDA 325 (470)
Q Consensus 250 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 325 (470)
.+.+.|...+....+... .+......+-.. ....+...++...+....... .+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 367788888877754332 233222222222 223342445555555544332 2332333334444567888888
Q ss_pred HHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------------CCCCC------------HHH---
Q 012126 326 CKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISK------------GFSPH------------FSV--- 378 (470)
Q Consensus 326 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------------~~~~~------------~~~--- 378 (470)
...|+.|...... ...-..=+..++...|+.++|..+|..+.+. |.++. ...
T Consensus 305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~ 383 (618)
T 1qsa_A 305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGP 383 (618)
T ss_dssp HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSH
T ss_pred HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccCh
Confidence 8888887653211 2222333455667778888888877776431 21110 000
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHH
Q 012126 379 SHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVL 434 (470)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 434 (470)
-...+..+...|....|...+..+.+. .+......+.......|.++.++...
T Consensus 384 ~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 384 EMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 112234466678888888777776653 23333334444445566666555443
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=44.70 E-value=54 Score=25.76 Aligned_cols=13 Identities=8% Similarity=0.051 Sum_probs=6.2
Q ss_pred HhcCChhHHHHHH
Q 012126 212 CFNGDISIAYTLF 224 (470)
Q Consensus 212 ~~~g~~~~a~~~~ 224 (470)
+..|+.+.+..++
T Consensus 13 ~~~g~~~~v~~ll 25 (201)
T 3hra_A 13 ANQRDTKKVKEIL 25 (201)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhccHHHHHHHH
Confidence 3445555444444
No 299
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=44.45 E-value=29 Score=30.33 Aligned_cols=25 Identities=8% Similarity=0.242 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 012126 204 YNIMMRAFCFNGDISIAYTLFNKMF 228 (470)
Q Consensus 204 ~~~li~~~~~~g~~~~a~~~~~~m~ 228 (470)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4556777777788877777777653
No 300
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=43.60 E-value=1.1e+02 Score=23.87 Aligned_cols=55 Identities=18% Similarity=0.102 Sum_probs=33.3
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCC--C--------------C-HhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012126 245 GLCRKSQVNRAVDLLEDMLNKGFV--P--------------D-TLSYTTLLNSLCRKKKLREAYKLLCRMKV 299 (470)
Q Consensus 245 ~~~~~~~~~~a~~~~~~~~~~~~~--~--------------~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 299 (470)
+|-+..++..|+..++.+....+. | | ...++.+...+...|+.++|+..+..--.
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 445566666666666666643322 1 2 34556666677778888888877765543
No 301
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=43.55 E-value=42 Score=27.31 Aligned_cols=6 Identities=0% Similarity=-0.241 Sum_probs=2.5
Q ss_pred hcCCHH
Q 012126 283 RKKKLR 288 (470)
Q Consensus 283 ~~~~~~ 288 (470)
..|+.+
T Consensus 186 ~~~~~~ 191 (240)
T 3eu9_A 186 LAGNTT 191 (240)
T ss_dssp HHTCHH
T ss_pred HcCCHH
Confidence 344443
No 302
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=43.41 E-value=65 Score=22.30 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=15.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 012126 360 AKKYMQLMISKGFSPHFSVSHALIKGFCNVG 390 (470)
Q Consensus 360 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 390 (470)
|..+.++....|+.|+..+..-++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4444444545555555555555555554444
No 303
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.33 E-value=2.3e+02 Score=26.82 Aligned_cols=66 Identities=9% Similarity=0.008 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHhCCC-ccC--HHHHHHHHHHHHhcCCChhhHHHHHHHHHHC
Q 012126 130 PSLFTYLIKIYAESNLPDRALKTFRSMLEFNC-KPL--PKQLNRILELLVTHRNYLRPAFDLFKSAHKH 195 (470)
Q Consensus 130 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~--~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 195 (470)
..++|.+++.|...+.++.|..+..+..--.. .++ ...|...++.+....+++.+|.+.+....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 56788899999999999999999988742100 111 2345555566655667788888888877754
No 304
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=41.98 E-value=1.1e+02 Score=23.90 Aligned_cols=63 Identities=13% Similarity=0.088 Sum_probs=27.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHh---hHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCC
Q 012126 243 MQGLCRKSQVNRAVDLLEDMLNKGFVPDTL---SYTTLLNSLCR-KKKLREAYKLLCRMKVKGCNPD 305 (470)
Q Consensus 243 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~-~~~~~~a~~~~~~m~~~~~~~~ 305 (470)
+...+..|+.+.-.++.+.+++.|..++.. -.+.|..++.. ..+.....++.+.+.+.|..++
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 333444455544445555555555544332 12222222211 2233344455555555554443
No 305
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=41.84 E-value=1.1e+02 Score=23.27 Aligned_cols=64 Identities=16% Similarity=0.278 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhCCCC
Q 012126 204 YNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQ--VNRAVDLLEDMLNKGFV 268 (470)
Q Consensus 204 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~ 268 (470)
.+.++.-|...|+.++|...++++..-... ...+...+..++-+.++ .+.+..++..+...|+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 455667777777777777777776421111 22333333334443222 34566666666666544
No 306
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.97 E-value=2.1e+02 Score=29.61 Aligned_cols=51 Identities=6% Similarity=-0.143 Sum_probs=28.2
Q ss_pred HHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 012126 312 VVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLM 367 (470)
Q Consensus 312 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 367 (470)
++..+...|.++-|.++..-+.. +...--.+..+|...|++++|..+|+++
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-----t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-----SHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44455556666655544333322 3322234566677777777777777654
No 307
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=40.37 E-value=1.8e+02 Score=25.20 Aligned_cols=60 Identities=7% Similarity=0.077 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHH
Q 012126 167 QLNRILELLVTHRNYLRPAFDLFKSAHKHGVLPNTKSYNIMMRAFCFNGD--ISIAYTLFNKMFE 229 (470)
Q Consensus 167 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~ 229 (470)
....++.-|... ++.++|...++++..... .......++......++ -+.+-.++..+..
T Consensus 5 ~~~~ii~EYf~~-~d~~Ea~~~l~el~~p~~--~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 5 TLTPIIQEYFEH-GDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHH-CCHHHHHHHHHTTCCGGG--GGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHhCCcch--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 345667777744 568888888887643221 12222334444444443 2344556666653
No 308
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=39.53 E-value=1.3e+02 Score=23.20 Aligned_cols=52 Identities=10% Similarity=0.028 Sum_probs=30.4
Q ss_pred hcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHHcCChHHHHHHHHHHHh
Q 012126 213 FNGDISIAYTLFNKMFERGVMP--DVESYRILMQ-G-----LCRKSQVNRAVDLLEDMLN 264 (470)
Q Consensus 213 ~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~~~ 264 (470)
..|++-+|.++++..-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477777777777766654444 3445555555 1 2335666666666666543
No 309
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.59 E-value=76 Score=24.20 Aligned_cols=63 Identities=14% Similarity=0.204 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCC
Q 012126 239 YRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKK--LREAYKLLCRMKVKGC 302 (470)
Q Consensus 239 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~ 302 (470)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...|+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 345677777778888888888776421111 22333444444444322 3455666666665543
No 310
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=37.35 E-value=1.6e+02 Score=23.63 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=10.0
Q ss_pred cCChHHHHHHHHHHHhCC
Q 012126 249 KSQVNRAVDLLEDMLNKG 266 (470)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~ 266 (470)
-.|.+.|+-.+.+|++.|
T Consensus 27 GSDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG 44 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 345555555555555555
No 311
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=36.79 E-value=1.2e+02 Score=22.17 Aligned_cols=66 Identities=15% Similarity=0.251 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhCCCCCC
Q 012126 204 YNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQ--VNRAVDLLEDMLNKGFVPD 270 (470)
Q Consensus 204 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~ 270 (470)
...++.-|...|+.++|...++++..-... ...+...+..++-+.++ .+.+..++..+.+.|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 456777788888888888888887422111 22333344444444332 3566777777777665533
No 312
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=36.48 E-value=50 Score=28.16 Aligned_cols=204 Identities=11% Similarity=0.035 Sum_probs=100.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHH
Q 012126 206 IMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDT---LSYTTLLNSLC 282 (470)
Q Consensus 206 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~ 282 (470)
+.+...+..|+.+-+..+++ .|..++...-.+.+...+..|+.+-+..+ .+.|..++. .-++.| ...+
T Consensus 33 t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~ga~~~~~d~~g~t~L-~~A~ 103 (285)
T 3kea_A 33 SASYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVKIL----LFSGLDDSQFDDKGNTAL-YYAV 103 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHHHH----HHTTCCTTCCCTTSCCHH-HHHH
T ss_pred CHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCCcHH-HHHH
Confidence 34455567788776655554 44333322122344455566776654444 445654432 223333 3445
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCHhHHHHHHHhchhCCCCC-CH-HHHHHHHHHHHhcCCh
Q 012126 283 RKKKLREAYKLLCRMKVKGCNPDIV---HYNTVVLGFCREGRAIDACKVLEDMPSNGCLP-NL-VSYRTLVGGLCDQGMF 357 (470)
Q Consensus 283 ~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~-~~~~~li~~~~~~g~~ 357 (470)
..|+.+-+..+++. |..++.. .+.+.+...+..|+.+-+..+++. |..+ +. .-.+ .+...+..|+.
T Consensus 104 ~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~g~t-~L~~A~~~g~~ 174 (285)
T 3kea_A 104 DSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE----IPSTFDLAILLS-CIHITIKNGHV 174 (285)
T ss_dssp HTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT----SCTTCCCSTHHH-HHHHHHHTTCH
T ss_pred HcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhC----CCccccccCCcc-HHHHHHHcChH
Confidence 66777655555444 4443322 223455555677777655554443 3222 22 2333 44445677887
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 012126 358 DVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAGEEMEKLGEVLNEI 437 (470)
Q Consensus 358 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 437 (470)
+-+..+++.-..-... +..-.+..+...+..|.. ++.+.+++.|..++.... .-...|+.+-+.-+++.-
T Consensus 175 ~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~-----~a~~~~~~~iv~~Ll~~g 244 (285)
T 3kea_A 175 DMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANL-----ENVLLDDAEIAKMIIEKH 244 (285)
T ss_dssp HHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTG-----GGGTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCCh-----hhhhcCCHHHHHHHHHcC
Confidence 7766666554332221 111222223333445654 455556677877766542 113456555444444443
No 313
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=36.24 E-value=51 Score=27.40 Aligned_cols=21 Identities=10% Similarity=0.015 Sum_probs=9.6
Q ss_pred HHccCCchHHHHHHHHHhhCC
Q 012126 105 LGRAKYFSLIDDILITLKSEH 125 (470)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~ 125 (470)
.++.|+.+....+++.+...+
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcC
Confidence 344455554444444444433
No 314
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=35.05 E-value=3.2e+02 Score=26.51 Aligned_cols=311 Identities=9% Similarity=-0.040 Sum_probs=135.5
Q ss_pred HhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchh
Q 012126 69 IASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDR 148 (470)
Q Consensus 69 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 148 (470)
+.+.+++...+.++.. .+.+...-.....+....|+-.+|......+-..| ...+..+..++..+.+.|....
T Consensus 82 l~~~~~w~~~l~~~~~------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 82 LARREDWRGLLAFSPE------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp HHHTTCHHHHHHHCCS------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCH
T ss_pred HHhCCCHHHHHHhccC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCH
Confidence 3445666655543321 13344444555666667777666766666665555 3345567777777776665533
Q ss_pred --HHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHCC---------CCCCHHH---HHHHHHHHHhc
Q 012126 149 --ALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFDLFKSAHKHG---------VLPNTKS---YNIMMRAFCFN 214 (470)
Q Consensus 149 --A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~---~~~li~~~~~~ 214 (470)
..+-++.+...| +......+...+ ........+.+..+.+.. ..++... +...+.-+.+
T Consensus 155 ~~~~~R~~~al~~~---~~~~a~~l~~~l---~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar- 227 (618)
T 1qsa_A 155 LAYLERIRLAMKAG---NTGLVTVLAGQM---PADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR- 227 (618)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHTC---CGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHhC---CHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh-
Confidence 222222232222 111111111110 000000000011111100 0111111 1111222222
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 012126 215 GDISIAYTLFNKMFERGVMPDVESYRILMQGLC----RKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREA 290 (470)
Q Consensus 215 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 290 (470)
.+.+.|...+....+... .+......+-...+ ..+...++...+........ +.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC--ChHHHHHHHHHHHHCCCHHHH
Confidence 255666666666544321 12222222222222 22323344444444333221 222233333334455666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhC------------CCC-------CC-----HH---H
Q 012126 291 YKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSN------------GCL-------PN-----LV---S 343 (470)
Q Consensus 291 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------------~~~-------p~-----~~---~ 343 (470)
...|+.|...... .....-=+.+++...|+.++|..+|..+... |.+ ++ .. .
T Consensus 305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~ 383 (618)
T 1qsa_A 305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGP 383 (618)
T ss_dssp HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSH
T ss_pred HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccCh
Confidence 6666666443111 1222223344555666666666666554321 111 00 00 0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 012126 344 YRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLE 400 (470)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 400 (470)
-..-+..+...|....|...+..+.+. . +..-...+.......|..+.+.....
T Consensus 384 ~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 384 EMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 112244567788888888888877664 2 33333344555566777777665543
No 315
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=35.04 E-value=72 Score=25.00 Aligned_cols=81 Identities=16% Similarity=0.132 Sum_probs=36.5
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCC
Q 012126 245 GLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIV---HYNTVVLGFCREGR 321 (470)
Q Consensus 245 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~~~ 321 (470)
..+..|+.+....++..-...--..+..-++.| ...+..|+.+-+. .+.+.|..++.. ..+ .+...+..|+
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~ 84 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTPL-NIAVHNNDIEIAK----ALIDRGADINLQNSISDS-PYLYAGAQGR 84 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHH-HHHHHHTCHHHHH----HHHHTTCCTTCCCTTSCC-HHHHHHHTTC
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHH-HHHHHcCCHHHHH----HHHHcCCCCCCCCCCCCC-HHHHHHHcCC
Confidence 345667777666665432100001122223333 3344556655444 444445444322 122 2333455677
Q ss_pred HhHHHHHHHh
Q 012126 322 AIDACKVLED 331 (470)
Q Consensus 322 ~~~a~~~~~~ 331 (470)
.+-+..+++.
T Consensus 85 ~~~~~~Ll~~ 94 (201)
T 3hra_A 85 TEILAYMLKH 94 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7666666543
No 316
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=34.66 E-value=1.5e+02 Score=22.40 Aligned_cols=12 Identities=0% Similarity=0.016 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 012126 288 REAYKLLCRMKV 299 (470)
Q Consensus 288 ~~a~~~~~~m~~ 299 (470)
-.|.++++.+.+
T Consensus 43 ~sa~ei~~~l~~ 54 (150)
T 2xig_A 43 LSPEEITHSIRQ 54 (150)
T ss_dssp BCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 334444444433
No 317
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.56 E-value=2.8e+02 Score=28.73 Aligned_cols=131 Identities=13% Similarity=0.063 Sum_probs=73.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC
Q 012126 277 LLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGM 356 (470)
Q Consensus 277 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 356 (470)
++..+...|..+-+.++..- ++.++..--.+..+|...|++++|...|++.-. |+..+......
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~---------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAV---------- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGG----------
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccc----------
Confidence 44445556666655443322 233544444577889999999999999998642 33222111000
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHcCC
Q 012126 357 FDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEELLKAGEAPHED----TWVMIVPQICAGE 425 (470)
Q Consensus 357 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g 425 (470)
......++... +. -.....-|..++..|-+.+.++.+.++-+..++.--.-|.. .|..++++.+..|
T Consensus 880 ~~~~~~ll~~~-e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 LREFQEIAEKY-HH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp GHHHHHHHHHT-TT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhccCcc-cc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00111111111 10 01123477888888999999999988888887642222333 6777777766554
No 318
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=33.38 E-value=1.3e+02 Score=22.20 Aligned_cols=57 Identities=12% Similarity=0.121 Sum_probs=25.0
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 012126 333 PSNGCLPNLVSYRTLVGGLCDQG-MFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVG 390 (470)
Q Consensus 333 ~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 390 (470)
.+.|.+++..-.. ++..+...+ ..-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 10 ~~~g~r~T~qR~~-Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 10 RKAGLKVTLPRVK-ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHTTCCCCHHHHH-HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHCCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3444444433222 333333333 44455555555555544444444444444444444
No 319
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=32.96 E-value=3e+02 Score=25.41 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=22.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 012126 284 KKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGR 321 (470)
Q Consensus 284 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 321 (470)
.++.+.|+.++.+|.+.|..|....-..++.+.-.-|.
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~ 305 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGN 305 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Confidence 45677777777777777665554444444445444443
No 320
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=32.34 E-value=2.2e+02 Score=25.07 Aligned_cols=22 Identities=9% Similarity=-0.055 Sum_probs=10.5
Q ss_pred HHHHHHHccCCchHHHHHHHHH
Q 012126 100 ILILKLGRAKYFSLIDDILITL 121 (470)
Q Consensus 100 ~ll~~~~~~~~~~~a~~~~~~~ 121 (470)
.++.-|...|+.++|...++++
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHc
Confidence 3444444445555554444443
No 321
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=31.90 E-value=2e+02 Score=23.05 Aligned_cols=32 Identities=19% Similarity=0.092 Sum_probs=16.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 012126 249 KSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNS 280 (470)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 280 (470)
-.|.+.|+-.+.+|++.|-.|.-..-..++-+
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~A 51 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIA 51 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 35566666666666666655444333333333
No 322
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=31.89 E-value=1.1e+02 Score=23.50 Aligned_cols=68 Identities=13% Similarity=0.171 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCC
Q 012126 77 LAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDDILITLKSE--HYPVTPSLFTYLIKIYAESNL 145 (470)
Q Consensus 77 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~ 145 (470)
.+++-+....+..|++.+.. =..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-
T Consensus 15 ~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 15 VLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 34444444444444444432 233344444445555556666655544 333344444444444455543
No 323
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=31.82 E-value=4.4e+02 Score=27.07 Aligned_cols=90 Identities=12% Similarity=0.078 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCC---hhHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 012126 205 NIMMRAFCFNGD---ISIAYTLFNKMFERG----VMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTL 277 (470)
Q Consensus 205 ~~li~~~~~~g~---~~~a~~~~~~m~~~~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 277 (470)
..++...|..|. .+.|.+.|++....+ +.||.. ..+...-.+.|+.++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 345566667665 346667777665431 344422 223333345566666666666666542 33344556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 012126 278 LNSLCRKKKLREAYKLLCRMKV 299 (470)
Q Consensus 278 l~~~~~~~~~~~a~~~~~~m~~ 299 (470)
+.+++...+.+...++++....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTC
T ss_pred HHHhCCCCCHHHHHHHHHHHhC
Confidence 7777777777777777766654
No 324
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=31.65 E-value=26 Score=27.93 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=29.8
Q ss_pred chHHHHHHHHHhhCCCCCCHHH----HHHHHHHHHHcCCchhHHHHHHHHHh
Q 012126 111 FSLIDDILITLKSEHYPVTPSL----FTYLIKIYAESNLPDRALKTFRSMLE 158 (470)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~~~~ 158 (470)
++.|..+|+.+....-.+.... -...+..|.+.|.+++|.++|++...
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 4577778877765531111111 12245668889999999999998654
No 325
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=30.62 E-value=1.3e+02 Score=22.61 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=33.4
Q ss_pred chhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 012126 332 MPSNGCLPNLVSYRTLVGGLCDQG-MFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKV 392 (470)
Q Consensus 332 m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 392 (470)
+.+.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..|..--+..+...|-+
T Consensus 8 l~~~g~r~T~qR~~-Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTLPRLK-ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCHHHHH-HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 44556665554333 344444444 4556777777776665555555555555556666544
No 326
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.67 E-value=1.8e+02 Score=21.76 Aligned_cols=38 Identities=5% Similarity=-0.110 Sum_probs=17.1
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 012126 213 FNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKS 250 (470)
Q Consensus 213 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 250 (470)
..+..-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 33 ~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 33 NSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred hCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33444445555555554444444444433344444433
No 327
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.64 E-value=1.8e+02 Score=21.89 Aligned_cols=45 Identities=7% Similarity=0.055 Sum_probs=21.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 012126 206 IMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKS 250 (470)
Q Consensus 206 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 250 (470)
.++..+...+..-.|.++++.+.+.+...+..|.--.+..+...|
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 334444444445555566665555544444444444444444444
No 328
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=28.97 E-value=3.5e+02 Score=24.95 Aligned_cols=124 Identities=19% Similarity=0.139 Sum_probs=68.2
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-C---CCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCH
Q 012126 232 VMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGF-V---PDTLSYTTLLNSLCRKK-KLREAYKLLCRMKVKGCNPDI 306 (470)
Q Consensus 232 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~---~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~ 306 (470)
+..+......++.. -.|+..+++.+++.+..... . ....+...+-.+..+.. .++ +...
T Consensus 190 ~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~~~~d--------------k~gd 253 (447)
T 3pvs_A 190 IVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFD--------------NKGD 253 (447)
T ss_dssp EECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCCCC-----------------CCH
T ss_pred CcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhhhhccC--------------Cccc
Confidence 34456666666555 46888888888877654321 0 01222222222221110 000 0012
Q ss_pred HHHHHHHHHH---HhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHCCC
Q 012126 307 VHYNTVVLGF---CREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGM-----FDVAKKYMQLMISKGF 372 (470)
Q Consensus 307 ~~~~~li~~~---~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~ 372 (470)
..|+ ++.++ .+..+.+.|+.++..|.+.|..|....-..++.+...-|. ...|...++.....|+
T Consensus 254 ~~yd-~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 254 RFYD-LISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 2222 33333 3567899999999999999887776666666666665554 3456666666666664
No 329
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=28.20 E-value=1.8e+02 Score=21.39 Aligned_cols=35 Identities=9% Similarity=0.085 Sum_probs=15.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 012126 216 DISIAYTLFNKMFERGVMPDVESYRILMQGLCRKS 250 (470)
Q Consensus 216 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 250 (470)
..-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555555444444444433344444433
No 330
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=28.15 E-value=39 Score=20.88 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012126 289 EAYKLLCRMKVKGCNPDIVHYNTVVLGF 316 (470)
Q Consensus 289 ~a~~~~~~m~~~~~~~~~~~~~~li~~~ 316 (470)
+|.+.|.+|++..-.+...+|...+..+
T Consensus 4 Eae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 4 EAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp HHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 3444444443332222333444444433
No 331
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=27.70 E-value=1.9e+02 Score=21.57 Aligned_cols=15 Identities=0% Similarity=-0.132 Sum_probs=6.6
Q ss_pred chhHHHHHHHHHhCC
Q 012126 146 PDRALKTFRSMLEFN 160 (470)
Q Consensus 146 ~~~A~~~~~~~~~~~ 160 (470)
.-.|.++++.+.+.+
T Consensus 33 h~ta~ei~~~l~~~~ 47 (145)
T 3eyy_A 33 HATPDDILGEVRKTA 47 (145)
T ss_dssp SBCHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHhhC
Confidence 334444444444433
No 332
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=27.62 E-value=1.7e+02 Score=21.90 Aligned_cols=34 Identities=3% Similarity=-0.044 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 012126 217 ISIAYTLFNKMFERGVMPDVESYRILMQGLCRKS 250 (470)
Q Consensus 217 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 250 (470)
.-.|.++++.+.+.+...+..|.---+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3445555555544444444444333333333333
No 333
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=27.48 E-value=3.8e+02 Score=24.93 Aligned_cols=141 Identities=11% Similarity=0.064 Sum_probs=84.3
Q ss_pred cCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCChhhHHH
Q 012126 108 AKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELLVTHRNYLRPAFD 187 (470)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~ 187 (470)
..+.+.|.++-. +.|+|--...|..-.+.+...|++++|.++--.... |+-.+..+.+.+...- ...|...-.+.
T Consensus 342 l~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp-~~pgq~splL~ 416 (494)
T 1bpo_A 342 LQNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVP-AQPGQTSPLLQ 416 (494)
T ss_dssp TCCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSC-CCTTSCCHHHH
T ss_pred cCCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCC-CCCCCCCHHHH
Confidence 355666655544 466777788888888899999999999887766544 4556677766554322 23455566777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012126 188 LFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDM 262 (470)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 262 (470)
+|..+.+.|- .+..---.+++.-...|+.+-..+++.+ ..+..+... .-++ +..+..-|+.+|.+.
T Consensus 417 YF~~Ll~~g~-Ln~~ESlEl~r~vL~q~r~~llekWl~e---~KL~~SEeL-GDlv----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 417 YFGILLDQGQ-LNKYESLELCRPVLQQGRKQLLEKWLKE---DKLECSEEL-GDLV----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHH---TCSCCCHHH-HHHH----HHHCSHHHHHHHHHH
T ss_pred HHHHHhccCc-cchHHhhHHhHHHHhccHHHHHHHHHhc---CCccccHHh-Hhhh----hhcCHHHHHHHHHHc
Confidence 7777776653 3554444556666666666655555443 223333322 2222 333555666666554
No 334
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.27 E-value=2e+02 Score=21.57 Aligned_cols=35 Identities=11% Similarity=0.127 Sum_probs=15.4
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 012126 216 DISIAYTLFNKMFERGVMPDVESYRILMQGLCRKS 250 (470)
Q Consensus 216 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 250 (470)
..-.|.++++.+.+.+...+..|.---+..+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555544444444444333334444433
No 335
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=26.13 E-value=3.5e+02 Score=24.10 Aligned_cols=26 Identities=0% Similarity=-0.160 Sum_probs=18.6
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHh
Q 012126 97 TYLILILKLGRAKYFSLIDDILITLK 122 (470)
Q Consensus 97 ~~~~ll~~~~~~~~~~~a~~~~~~~~ 122 (470)
....++.-|...|+.++|...++++.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 34566777777788888877777764
No 336
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=25.87 E-value=2.6e+02 Score=22.58 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=16.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 012126 249 KSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNS 280 (470)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 280 (470)
-.|.+.|+-.+.+|++.|-.|.-..-..++-+
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~A 79 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISA 79 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 35555666666666655554443333333333
No 337
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=25.77 E-value=1.1e+02 Score=19.32 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=28.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 012126 378 VSHALIKGFCNVGKVDEACGVLEELLKAGEAPHEDTWVMIVPQICAG 424 (470)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 424 (470)
.++-+++.++...-+++++..++++.+.|. .+..+|..-++.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 345566666666666777777777766663 3666666555555543
No 338
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=25.33 E-value=1.2e+02 Score=25.64 Aligned_cols=192 Identities=9% Similarity=-0.016 Sum_probs=93.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 012126 188 LFKSAHKHGVLPNTKSYNIMMRAFCFNGDISIAYTLFNKMFERGVMPDV---ESYRILMQGLCRKSQVNRAVDLLEDMLN 264 (470)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 264 (470)
+++.+.+.|..++...-.+.+...+..|+.+-+..+ .+.|..++. .-++ .+...+..|+.+-+..+++.
T Consensus 46 ~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~--- 117 (285)
T 3kea_A 46 LVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKIL----LFSGLDDSQFDDKGNT-ALYYAVDSGNMQTVKLFVKK--- 117 (285)
T ss_dssp HHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHH----HHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHH---
T ss_pred HHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCCc-HHHHHHHcCCHHHHHHHHhc---
Confidence 344444555443322223445556677876655444 445654432 2222 34445567776655544443
Q ss_pred CCCCCCHh---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCC
Q 012126 265 KGFVPDTL---SYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIV-HYNTVVLGFCREGRAIDACKVLEDMPSNGCLPN 340 (470)
Q Consensus 265 ~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 340 (470)
|..++.. -+.+.+...+..|+.+-+. .+.+.|..+... .-.+.+...+..|+.+-+.-+++.-..-+. .+
T Consensus 118 -ga~~~~~~~~g~~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~ 191 (285)
T 3kea_A 118 -NWRLMFYGKTGWKTSFYHAVMLNDVSIVS----YFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NN 191 (285)
T ss_dssp -CGGGGGCSSSGGGSHHHHHHHTTCHHHHH----HHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT-TC
T ss_pred -CCCCCccCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCc-cc
Confidence 5443332 2234455556677765444 444444333211 233445555677888776666665333222 12
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 012126 341 LVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPHFSVSHALIKGFCNVGKVDEACGVLEEL 402 (470)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 402 (470)
..-.+..+...+..|+. ++.+.+++.|..++.... .-+..|+.+-+.-+++.-
T Consensus 192 ~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~-----~a~~~~~~~iv~~Ll~~g 244 (285)
T 3kea_A 192 SLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANL-----ENVLLDDAEIAKMIIEKH 244 (285)
T ss_dssp CCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTG-----GGGTTTCHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCCh-----hhhhcCCHHHHHHHHHcC
Confidence 22222223333445554 455666777877765432 113466665555555443
No 339
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.92 E-value=2.2e+02 Score=21.24 Aligned_cols=54 Identities=13% Similarity=0.080 Sum_probs=22.5
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 012126 121 LKSEHYPVTPSLFTYLIKIYAESNLPDRALKTFRSMLEFNCKPLPKQLNRILELL 175 (470)
Q Consensus 121 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 175 (470)
+.+.|+..++. -..++..+...+..-.|.++++.+.+.+...+..|....|..+
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L 66 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVF 66 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHH
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 33444443332 2233333334444445555555554443333344433333333
No 340
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=24.79 E-value=2.2e+02 Score=22.72 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=8.0
Q ss_pred ccCCHHHHHHHHHHHHHCC
Q 012126 388 NVGKVDEACGVLEELLKAG 406 (470)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~ 406 (470)
..|+.+-+..+++.+.+.|
T Consensus 163 ~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 163 LQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp TCSCHHHHHHHHHHHHHTT
T ss_pred HcCChHHHHHHHHHHHhcC
Confidence 3444444444444444433
No 341
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=24.41 E-value=3e+02 Score=26.34 Aligned_cols=73 Identities=8% Similarity=-0.025 Sum_probs=28.5
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHH
Q 012126 251 QVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVVLGFCREGRAIDA 325 (470)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 325 (470)
+........++++.+=.--+..-..-++..|.+.|-.+.|.++++.+-..-+. +...| ..+..|+++|+++.+
T Consensus 496 ~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 496 TRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp CHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred chhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 33444555555554322224455566677777777777777777766544222 23334 445556677766543
No 342
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.16 E-value=1.3e+02 Score=21.94 Aligned_cols=40 Identities=10% Similarity=0.097 Sum_probs=16.9
Q ss_pred HHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcC
Q 012126 316 FCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQG 355 (470)
Q Consensus 316 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 355 (470)
+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 20 l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 20 LETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333344444455555444433334434333344444433
No 343
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=23.10 E-value=1.1e+02 Score=25.44 Aligned_cols=22 Identities=5% Similarity=-0.096 Sum_probs=13.1
Q ss_pred HHHhcCChhHHHHHHHHHHHCC
Q 012126 210 AFCFNGDISIAYTLFNKMFERG 231 (470)
Q Consensus 210 ~~~~~g~~~~a~~~~~~m~~~~ 231 (470)
..++.|+.+.+..+++...+.+
T Consensus 19 ~A~~~g~~~~v~~Ll~~~~~~~ 40 (273)
T 2pnn_A 19 DAVAQSNCQELESLLPFLQRSK 40 (273)
T ss_dssp HHHHTTCSSTTTTHHHHHHHSC
T ss_pred HHHHcCCHHHHHHHHHHHhhcc
Confidence 3445666666666666655544
No 344
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=23.06 E-value=3.1e+02 Score=22.33 Aligned_cols=169 Identities=10% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcC
Q 012126 223 LFNKMFERGVMPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGFVPDTLSYTTLLNSLCRKK-KLREAYKLLCRMKVKG 301 (470)
Q Consensus 223 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~ 301 (470)
+.+-.+..|...+...+..+........-...|+.++.. -..+-.-|-.-+.+.| ..+.+..+++.+.+.|
T Consensus 35 l~~~~L~kg~el~~e~~~~i~~~~~~~~a~~~Al~~Ls~--------r~~S~~EL~~KL~~kg~~~e~i~~vl~~L~~~g 106 (221)
T 3d5l_A 35 LIQFRLMKGTELDEKQIAAIATADQQAKAYSRMLDYLSY--------QMRTESDIVKKLKEIDTPEEFVEPILKKLRGQQ 106 (221)
T ss_dssp HHHTTCCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCcCCCCCCHHHHHHHHHhHHHHHHHHHHHHHhcc--------ccccHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHhchhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHH
Q 012126 302 CNPDIVHYNTVVLGFCREGRAIDACKVLEDMPSNGCLPNLVSYRTLVGGLCDQGMFDVAKKYMQLMISKGFSPH-FSVSH 380 (470)
Q Consensus 302 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~ 380 (470)
.--|..--...+....+.+.+ ....+-.++...|+ +..+....+..+......+.|..+.++-.......+ .....
T Consensus 107 ~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI--~~~~I~~al~~~~~~~e~e~a~~l~~Kk~~~~~~~~~~~~k~ 183 (221)
T 3d5l_A 107 LIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGI--GESDIDDALTQFTPEVQAELAKKLALKLFRRYRNQPERRREQ 183 (221)
T ss_dssp CCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTC--CHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCC--CHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccCCChHHHHH
Q ss_pred HHHHHHHccC-CHHHHHHHHHHH
Q 012126 381 ALIKGFCNVG-KVDEACGVLEEL 402 (470)
Q Consensus 381 ~li~~~~~~g-~~~~a~~~~~~~ 402 (470)
-++..+.+.| .++.+..+++++
T Consensus 184 K~~~~L~rrGFs~~~I~~vl~~~ 206 (221)
T 3d5l_A 184 KVQQGLTTKGFSSSVYEMIKDEV 206 (221)
T ss_dssp HHHHHHHHTTCCHHHHHHHTTC-
T ss_pred HHHHHHHhCCCCHHHHHHHHHhc
No 345
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.00 E-value=1.9e+02 Score=22.16 Aligned_cols=45 Identities=4% Similarity=0.102 Sum_probs=20.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcC
Q 012126 206 IMMRAFCFNGDISIAYTLFNKMFER--GVMPDVESYRILMQGLCRKS 250 (470)
Q Consensus 206 ~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~ 250 (470)
.++..+...+..-.|.++++.+.+. +...+..|.---+..+...|
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444455555555555544 44444444433444444444
No 346
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=22.71 E-value=2.1e+02 Score=26.59 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHhCCCcc--------CHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 012126 132 LFTYLIKIYAESNLPDRALKTFRSMLEFNCKP--------LPKQLNRILELLVTHRNYLRPAFDLFKSAH 193 (470)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--------~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 193 (470)
..+.|...|.+.++...+..+++.+...+..| ...+|...++.+....+++.+|.+.+.+..
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~ 247 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAF 247 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHH
Confidence 45567788888888888888887776544322 223444444444444444555555544444
No 347
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=22.68 E-value=83 Score=25.49 Aligned_cols=51 Identities=4% Similarity=-0.139 Sum_probs=27.3
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 012126 385 GFCNVGKVDEACGVLEELLKAGEAPHED--TWVMIVPQICAGEEMEKLGEVLNEIVK 439 (470)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~ 439 (470)
..++.|+.+-+ +.+++.|..++.. .-.+.+......|+.+.+.++.+.+.+
T Consensus 183 ~A~~~~~~~~v----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 183 IAARENRYDCV----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHTTCHHHH----HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHhHH----HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455665433 3344455444322 112233445667778888888887765
No 348
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.45 E-value=3.2e+02 Score=22.27 Aligned_cols=21 Identities=19% Similarity=0.176 Sum_probs=11.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 012126 279 NSLCRKKKLREAYKLLCRMKV 299 (470)
Q Consensus 279 ~~~~~~~~~~~a~~~~~~m~~ 299 (470)
-.|.+.|.+++|.+++++...
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHhcchHHHHHHHHHHhc
Confidence 345555666666666655544
No 349
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.33 E-value=1.6e+02 Score=21.44 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=9.7
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHH
Q 012126 215 GDISIAYTLFNKMFERGVMPDVES 238 (470)
Q Consensus 215 g~~~~a~~~~~~m~~~~~~p~~~~ 238 (470)
+..-.|.++++.+.+.+...+..|
T Consensus 24 ~~~~sa~ei~~~l~~~~~~is~~T 47 (131)
T 2o03_A 24 DDFRSAQELHDELRRRGENIGLTT 47 (131)
T ss_dssp CSCEEHHHHHHHHHHTTCCCCHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCCHhh
Confidence 333444444444444433333333
No 350
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.13 E-value=1.5e+02 Score=21.94 Aligned_cols=39 Identities=15% Similarity=0.111 Sum_probs=15.9
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 012126 210 AFCFNGDISIAYTLFNKMFERGVMPDVESYRILMQGLCR 248 (470)
Q Consensus 210 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 248 (470)
.+...+..-.|.++++.+.+.+...+..|.--.+..+..
T Consensus 22 ~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e 60 (139)
T 3mwm_A 22 ALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLAD 60 (139)
T ss_dssp HHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 333333344444444444444433343333333333333
No 351
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.76 E-value=1.6e+02 Score=21.85 Aligned_cols=42 Identities=14% Similarity=0.106 Sum_probs=19.0
Q ss_pred HHHHccCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 012126 103 LKLGRAKYFSLIDDILITLKSEHYPVTPSLFTYLIKIYAESN 144 (470)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 144 (470)
..+...+..-.|.++++.+.+.+...+..+...-++.+...|
T Consensus 21 ~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 21 AALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 333333344445555555554443344444444444444444
No 352
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=20.76 E-value=6.9e+02 Score=25.60 Aligned_cols=91 Identities=8% Similarity=0.006 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCC---hHHHHHHHHHHHhCC----CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 012126 240 RILMQGLCRKSQ---VNRAVDLLEDMLNKG----FVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTV 312 (470)
Q Consensus 240 ~~ll~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 312 (470)
..++...|..|+ .+.|.+.|+.....+ +.||. -..+...-.+.|+.++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 345566677666 356677777765432 33443 2233333445677776666777766542 34444567
Q ss_pred HHHHHhcCCHhHHHHHHHhchhC
Q 012126 313 VLGFCREGRAIDACKVLEDMPSN 335 (470)
Q Consensus 313 i~~~~~~~~~~~a~~~~~~m~~~ 335 (470)
+.+++...+.....++++.....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~ 787 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNP 787 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCT
T ss_pred HHHhCCCCCHHHHHHHHHHHhCC
Confidence 77777777777777777776553
No 353
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.46 E-value=1.1e+02 Score=26.92 Aligned_cols=25 Identities=8% Similarity=0.220 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 012126 274 YTTLLNSLCRKKKLREAYKLLCRMK 298 (470)
Q Consensus 274 ~~~ll~~~~~~~~~~~a~~~~~~m~ 298 (470)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567777888888888888888775
No 354
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.12 E-value=1.9e+02 Score=18.74 Aligned_cols=30 Identities=10% Similarity=0.183 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 012126 219 IAYTLFNKMFERGVMPDVESYRILMQGLCR 248 (470)
Q Consensus 219 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 248 (470)
.+.++++.+.+.+...+..|..-.+..+..
T Consensus 35 s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 35 SAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp CHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 344444444443333333333333333333
No 355
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=20.10 E-value=1.4e+02 Score=21.77 Aligned_cols=46 Identities=9% Similarity=0.121 Sum_probs=22.7
Q ss_pred HHHhcCCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCchHHHH
Q 012126 67 KLIASQSDPLLAKEIFDYASRQPNFRHSNSTYLILILKLGRAKYFSLIDD 116 (470)
Q Consensus 67 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 116 (470)
+..+..++.+.|.++++++...+ +.+.|...+-.|-..=+++.+.+
T Consensus 40 etAa~S~d~elaEeLL~yFVe~g----~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 40 QYASESKDTELAEELLQWFLQEE----KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp HTTTSSCCSHHHHHHHHHHTTSC----SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC----chHHHHHHHHHHHhccChHHHHH
Confidence 33344555555555555554332 34445555555555544444443
No 356
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.03 E-value=2.2e+02 Score=19.50 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 012126 287 LREAYKLLCRMKV 299 (470)
Q Consensus 287 ~~~a~~~~~~m~~ 299 (470)
.+.|.++++.+..
T Consensus 53 ~~~ar~Lld~L~~ 65 (97)
T 3ygs_P 53 RDQARQLIIDLET 65 (97)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
Done!