Query 012127
Match_columns 470
No_of_seqs 225 out of 990
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 23:20:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012127.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012127hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4683 Uncharacterized conser 100.0 6E-72 1.3E-76 548.5 18.4 439 1-470 108-549 (549)
2 COG4299 Uncharacterized protei 100.0 2.5E-63 5.3E-68 472.3 26.5 359 33-470 6-371 (371)
3 COG2311 Predicted membrane pro 99.9 2.1E-21 4.6E-26 198.6 25.3 125 26-170 4-144 (394)
4 PF07786 DUF1624: Protein of u 99.8 1.5E-18 3.2E-23 167.4 17.4 113 34-158 1-118 (223)
5 PRK10835 hypothetical protein; 99.8 1.1E-16 2.3E-21 166.1 26.9 103 38-166 1-119 (373)
6 COG3503 Predicted membrane pro 99.6 8.8E-14 1.9E-18 136.2 18.8 121 32-164 13-138 (323)
7 PF10129 OpgC_C: OpgC protein; 99.1 6.3E-08 1.4E-12 100.1 26.4 82 34-119 1-85 (358)
8 PF01757 Acyl_transf_3: Acyltr 98.5 9E-05 1.9E-09 72.6 26.0 54 36-89 2-61 (340)
9 PF04235 DUF418: Protein of un 98.3 8.7E-06 1.9E-10 74.8 12.9 49 360-410 60-108 (163)
10 COG4645 Uncharacterized protei 98.2 0.00031 6.7E-09 70.7 20.4 87 29-119 18-110 (410)
11 PRK03854 opgC glucans biosynth 98.1 0.0083 1.8E-07 62.4 31.0 90 29-119 3-101 (375)
12 PF06423 GWT1: GWT1; InterPro 97.7 0.0004 8.7E-09 62.2 11.2 117 289-408 3-133 (136)
13 COG3274 Predicted O-acyltransf 96.9 0.39 8.5E-06 48.7 23.1 57 32-88 2-65 (332)
14 COG5062 Uncharacterized membra 94.4 0.32 6.9E-06 49.7 10.3 111 287-401 265-379 (429)
15 COG3594 NolL Fucose 4-O-acetyl 92.2 16 0.00034 37.8 23.4 51 31-87 1-54 (343)
16 COG1835 Predicted acyltransfer 88.5 0.38 8.2E-06 50.2 3.3 70 25-100 5-76 (386)
17 PF15345 TMEM51: Transmembrane 71.1 2.7 5.8E-05 40.8 2.1 31 352-382 58-88 (233)
18 TIGR02230 ATPase_gene1 F0F1-AT 41.8 88 0.0019 26.6 6.1 26 289-314 41-68 (100)
19 PF11654 DUF2665: Protein of u 41.4 35 0.00075 24.9 3.0 31 78-108 9-41 (47)
20 PF05857 TraX: TraX protein; 40.0 94 0.002 29.6 6.9 63 37-111 2-64 (219)
21 PF10295 DUF2406: Uncharacteri 37.5 24 0.00052 27.9 1.9 26 15-45 39-64 (69)
22 COG3619 Predicted membrane pro 34.4 2.1E+02 0.0045 28.0 8.2 55 65-121 51-105 (226)
23 COG4763 Predicted membrane pro 34.2 37 0.00081 34.6 3.1 44 366-412 274-317 (388)
No 1
>KOG4683 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6e-72 Score=548.49 Aligned_cols=439 Identities=38% Similarity=0.671 Sum_probs=375.6
Q ss_pred CcccccccccCCCccccCCCcch--hhhccccccchhHHHHHHHHHHHHHHHHHhcCCCCccccccCcccchhhHHHHHH
Q 012127 1 MSEIKAETTHHHPLIISEPDVSD--QQEKSHLKTQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMP 78 (470)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ri~slD~lRGlai~~Milvn~~~~~~~~l~h~~w~G~~~~DlvfP 78 (470)
|.|||.|..|.|-+--...|.|. ..++.++.++|+.|+|++||+++++||+||+.|+.||+.+|++|||++++|.|+|
T Consensus 108 ~~~ik~~~~~d~~~~E~k~~~ss~~~~rsla~~r~RL~SLD~FRGltValMIlVdd~GG~~p~I~HapWnG~~LADfVmP 187 (549)
T KOG4683|consen 108 ALKIKSCAWRDYRYDEAKAAASSIGEARSLATQRKRLRSLDTFRGLTVALMILVDDGGGGYPWIEHAPWNGLHLADFVMP 187 (549)
T ss_pred HHHHhhccchhhhhccchhhhhhhhhhhhcCCCchhhhhhhhhcCceEEEEEEEecCCCCchhhhcCCcCCccHHHHHHH
Confidence 35889998887776433333332 2344556678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccccchhhhchHHHHHHHHHHHHHHH
Q 012127 79 FFLFIVGVAIALALKRIPDRADAVKKVIFRTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLV 158 (470)
Q Consensus 79 ~Flfl~G~s~~l~~~r~~~~~~~~~~~~~R~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~r~~gVLq~I~~~y~v~all 158 (470)
+|+|++|+|+++++++...|.+..+|.--|..+|++.|++++..|.+.++++++|.|.+++|++|||||+|++|++.+++
T Consensus 188 fFLfIvGVsials~K~~s~rf~a~rKa~~R~cklllwgLflqGgf~h~~~nLTygidve~lR~mGILQr~~~ayLVvAi~ 267 (549)
T KOG4683|consen 188 FFLFIVGVSIALSVKSQSSRFSATRKAKARICKLLLWGLFLQGGFLHSMSNLTYGIDVEQLRIMGILQRFGVAYLVVAIL 267 (549)
T ss_pred HHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhcccCcccccCCccHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHcccCCCcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHhccCCCccccccCCCCCCcCcccceeccccCCCC-CCC
Q 012127 159 EIFTKDVQDKDQSVGRFSIFRLYCWHWLMAACVLVVYLALLYGTYVPDWQFTIINKDSADYGKVFNVTCGVRAKLN-PPC 237 (470)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~l~~~~~vp~~~~~~~~~~~~~~g~~~~v~~~~~g~l~-~~~ 237 (470)
.....++ .+.+++ +|-++..+.+..+.+..++..||+|.....+...+.|||-+.+.||.++... |.|
T Consensus 268 ~~~~~~~--~~~~~S---------~~R~V~~~~L~~~~~~~~~~~V~~~~~~~~~~~~~~~~r~~~~~~G~~~~~~~P~C 336 (549)
T KOG4683|consen 268 HTLCCRP--ISPQRS---------WQRAVHDVCLFSGELAVLLALVATYLGLTFGLRVPGCPRGYLGPGGKHDYNAHPKC 336 (549)
T ss_pred hhhccCC--Cccccc---------hhhhhhHHHHHHHHHHHHHHhhhhhhceecccccCCCCcccccCCcccccCCCCCc
Confidence 7776552 222221 3344555666666666666777877665555555567777777777777665 469
Q ss_pred chhHHHHHHhhcccccccCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHhcccc
Q 012127 238 NAVGYIDRKVLGINHMYHHPAWRRSKACTQDSPFEGPLRKDAPSWCHAPFEPEGLLSSVSSILSTIIGVHFGHVIIHTKG 317 (470)
Q Consensus 238 n~~~~id~~llg~~h~y~~~~~~~~~~~~~~~~~~g~~r~~~~~~~~~~~dpeGll~tl~~i~~~LlG~~aG~~l~~~~~ 317 (470)
|+++|.||.++|++|+|++|+|++.++|+.+.|.+|++|.++++||..+|||||+++++.++..+++|+.+|+++.+.++
T Consensus 337 nAvGy~DrqvLGi~HiY~hP~~~r~k~cs~n~P~nG~l~~DAPSWCqapFdPEGilssi~avv~~llG~h~Ghiilh~k~ 416 (549)
T KOG4683|consen 337 NAVGYADRQVLGIAHIYQHPTAKRVKDCSINYPNNGPLPPDAPSWCQAPFDPEGILSSILAVVQVLLGAHAGHIILHHKN 416 (549)
T ss_pred cchhhhHHhhhhhHHHhcCchHHHhhhcccCCCCCCCCCCCCchhhcCCCChHHHHHHHHHHHHHHHHhhcCeEEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCccccCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCcccchhHhhHhcHHHHHH
Q 012127 318 HLARLKQWVTMGFALLIFGLTLHFTNAIPLNKQLYTLSYVCVTSGAAALVFSAIYALVDIWNLKYPFLPLAWIGMNAMLV 397 (470)
Q Consensus 318 ~~~~~~~l~~~G~~ll~lGl~l~~~~~~pi~K~lwT~S~vl~t~G~a~l~La~~y~l~d~~~~~~~~~pf~~~G~naL~~ 397 (470)
+..|+++|...++.+.++|..++.....|.||++|+.||+++|+|.+.++++.+|+++|++.|+.-..||+..|||++.+
T Consensus 417 ~~sRir~wis~~~~l~llg~tL~~~s~~Plnk~L~slsfvCVT~~~A~Li~S~mY~~iDv~EW~~~~~P~~~~GMNAi~~ 496 (549)
T KOG4683|consen 417 FQSRIRRWISLAILLGLLGGTLCGFSAIPLNKNLWSLSFVCVTVSLALLILSLMYYFIDVREWSWSGYPFTECGMNAIVM 496 (549)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccccchhHhHHHhhhhHHHHHHHHHHHHHHHHHhhHHHhhhccCChhhhccchhHH
Confidence 89999999999999888898887655579999999999999999999999999999999999887889999999999999
Q ss_pred HHHhhhhHHHHhhhhcccCCCCCChHHHHHHHhhhhhhccCchhHHHHHHHHHHHHHHHHHHHHHhccceEeC
Q 012127 398 YVMAAEGIFAGFINGWYYGDPHNTLPYWIKKHAFLGVWRSRKVSTILYVIFVEILFWGLVTGILHRFGIYWKL 470 (470)
Q Consensus 398 Yl~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~w~~i~~~l~rkki~ikl 470 (470)
|+.+ +++..+++ |+|+.++++. |.+.-.+.+- -+++|.+++.+++|.++|+|+
T Consensus 497 YV~~--~vL~~~~~-W~~R~~~~~~------H~~l~~~~t~-----------~~L~W~~i~~~~~~~~~Y~~~ 549 (549)
T KOG4683|consen 497 YVGH--SVLHKMLP-WHWRIGEMNT------HFMLLLEATW-----------NTLVWVGIALYLDAQEFYYSV 549 (549)
T ss_pred HHhH--HHHHHhcc-hhhccCCCce------eEEEeeehhh-----------hhhhhhhhheeeeheeeEecC
Confidence 9999 99998887 9999988765 2222233221 234699999999999999986
No 2
>COG4299 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=2.5e-63 Score=472.28 Aligned_cols=359 Identities=31% Similarity=0.498 Sum_probs=304.6
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCC---CCccccccCcccchhhHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHH
Q 012127 33 QRLASLDIFRGLAVALMILVDHAG---GDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFRT 109 (470)
Q Consensus 33 ~Ri~slD~lRGlai~~Milvn~~~---~~~~~l~h~~w~G~~~~DlvfP~Flfl~G~s~~l~~~r~~~~~~~~~~~~~R~ 109 (470)
-|+.|+|++||+++++||+||+.+ +.|+++.|++|.|+|.+|+|||.|+|++|.+|++|.+|..+.++...++.||.
T Consensus 6 ~RltsLDvfRGlTv~lMilVN~ag~gd~~y~qL~HA~w~G~T~tDlVFP~FLF~vG~am~Fs~sk~~~~n~~tw~~~RRa 85 (371)
T COG4299 6 FRLTSLDVFRGLTVLLMILVNNAGLGDSTYRQLSHAHWGGLTLTDLVFPWFLFCVGAAMPFSASKMNKANVTTWPLYRRA 85 (371)
T ss_pred hhhhhHHHHhhhHHHHHHhhcccccccccccccccccccCCCHHHHHHHHHHHHHhhhccccccccCccCCcchHHHHHH
Confidence 699999999999999999999965 37889999999999999999999999999999999998877777789999999
Q ss_pred HHHHHHHHHHHhccCCCCcccccccc-cchhhhchHHHHHHHHHHHHHHHHHHcccCCCcccccchhhhhhhHHHHHHHH
Q 012127 110 LKLLFWGILLQGGFSHAPDELTYGVD-VRMIRLCGVLQRIALSYLLVSLVEIFTKDVQDKDQSVGRFSIFRLYCWHWLMA 188 (470)
Q Consensus 110 ~~L~~lG~~~~~~~~~~~~~~~~~~~-~~~~r~~gVLq~I~~~y~v~all~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (470)
+.+|++|++++. |+...+ +.++ .+..|.+||||||++||+++++...+.+. ++|++.+
T Consensus 86 a~~f~Lg~Lm~~-F~~~~~---ws~~~~s~tr~mGVLQrIaL~ylfAal~v~~L~~-----------------r~q~~la 144 (371)
T COG4299 86 AERFALGYLMGA-FVTVRD---WSVTSHSLTRGMGVLQRIALAYLFAALLVRQLRG-----------------RWQALLA 144 (371)
T ss_pred HHHHHHHHHhhh-ccccce---eeeeechhhHHHHHHHHHHHHHHHHHHHHHhcCh-----------------HHHHHHH
Confidence 999999999976 443322 2233 57889999999999999999988766653 3789999
Q ss_pred HHHHHHHHHHHHhccCCCccccccCCCCCCcCcccceeccccCCCCCCCchhHHHHHHhhcccccccCCcccccccccCC
Q 012127 189 ACVLVVYLALLYGTYVPDWQFTIINKDSADYGKVFNVTCGVRAKLNPPCNAVGYIDRKVLGINHMYHHPAWRRSKACTQD 268 (470)
Q Consensus 189 ~~lL~~~~~l~~~~~vp~~~~~~~~~~~~~~g~~~~v~~~~~g~l~~~~n~~~~id~~llg~~h~y~~~~~~~~~~~~~~ 268 (470)
.+++++||+.+...++|+.+ ++..+|..+++|+.+.+.+|+|..
T Consensus 145 avLL~gYwl~lm~~p~P~~~------------------------l~~~Gn~g~~~d~l~i~~~hLy~~------------ 188 (371)
T COG4299 145 AVLLAGYWLFLMFTPHPAAP------------------------LGGIGNVGESADPLQILNDHLYSA------------ 188 (371)
T ss_pred HHHHHHHHHHHhhcCCCccc------------------------cccccccccccchhhhhhhhhhcc------------
Confidence 99999999988767776521 223358889999999999999963
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHhhhcCcccc
Q 012127 269 SPFEGPLRKDAPSWCHAPFEPEGLLSSVSSILSTIIGVHFGHVIIHTKGHLARLKQWVTMGFALLIFGLTLHFTNAIPLN 348 (470)
Q Consensus 269 ~~~~g~~r~~~~~~~~~~~dpeGll~tl~~i~~~LlG~~aG~~l~~~~~~~~~~~~l~~~G~~ll~lGl~l~~~~~~pi~ 348 (470)
+ ..+||||+++|+|+++.++.|+.++|++++++.+.+....+...|+.+.++|+.|.. .+|||
T Consensus 189 ---d------------G~~dpeGLlstvPttv~VLaGylaar~l~~~p~~~ra~l~la~~Gvvl~~~G~gW~~--~fPi~ 251 (371)
T COG4299 189 ---D------------GGFDPEGLLSTVPTTVLVLAGYLAARPLQQKPGNPRAPLLLAGLGVVLTALGYGWAG--RFPIS 251 (371)
T ss_pred ---c------------CCCCchhhhhcchHHHHHHHHHHhhhHHhhCCCCCcchHHHHHHHHHHHHhcccccc--ccccc
Confidence 1 137999999999999999999999999988766666677788999999999999874 58999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHhhcCcccchhHhhHhcHHHHHHHHHhhhhHHHHhh-hhcccC--CCCCChHHH
Q 012127 349 KQLYTLSYVCVTSGAAALVFSAIYALVDIWNLKYPFLPLAWIGMNAMLVYVMAAEGIFAGFI-NGWYYG--DPHNTLPYW 425 (470)
Q Consensus 349 K~lwT~S~vl~t~G~a~l~La~~y~l~d~~~~~~~~~pf~~~G~naL~~Yl~~~~~ii~~~~-~~~~~~--~~~~~~~~~ 425 (470)
|++||+||+++|+|++.+.++.||.+.|.+..+++..||++.|.|++..|+++ .++...+ ..|... .|..+ .+|
T Consensus 252 KkLWTssyvl~t~G~~llllaac~~l~e~~~~kr~~~pf~i~GlNalalyvls--~L~~v~l~~~~g~getaps~~-~~w 328 (371)
T COG4299 252 KKLWTSSYVLYTAGLGLLLLAACWVLAESPGGKRLLAPFTIPGLNALALYVLS--ILIKVWLLLDWGVGETAPSQS-IAW 328 (371)
T ss_pred hhhcCCceeehhhhHHHHHHHHHHHHHcCcccCcCcCceeecCcchhHHHHHH--HHHHHHHhhccccccccCCcc-hhH
Confidence 99999999999999999999999999999999999999999999999999999 6665543 223321 13333 688
Q ss_pred HHHHhhhhhhccCchhHHHHHHHHHHHHHHHHHHHHHhccceEeC
Q 012127 426 IKKHAFLGVWRSRKVSTILYVIFVEILFWGLVTGILHRFGIYWKL 470 (470)
Q Consensus 426 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~w~~i~~~l~rkki~ikl 470 (470)
.+.++++... .+..|++.|++.+.+++| +..++|+||+|++|+
T Consensus 329 ~~~n~f~s~~-g~~~Gsll~aL~yvl~~W-l~~~~MaRrg~~~Kl 371 (371)
T COG4299 329 SLLNMFRSSF-GPVGGSLLYALGYVLAVW-LGLAWMARRGIIWKL 371 (371)
T ss_pred HHHHHHHHhc-CCCCchhHHHHHHHHHHH-HHHHHHHhcceeeeC
Confidence 8888887755 678999999999666555 689999999999996
No 3
>COG2311 Predicted membrane protein [Function unknown]
Probab=99.89 E-value=2.1e-21 Score=198.56 Aligned_cols=125 Identities=26% Similarity=0.447 Sum_probs=98.6
Q ss_pred hccccccchhHHHHHHHHHHHHHHHHHhcCCCCccc----cccCcc-cch-----hhHHHH-----HHHHHHHHHHHHHH
Q 012127 26 EKSHLKTQRLASLDIFRGLAVALMILVDHAGGDWPE----ISHAPW-NGC-----NLADFV-----MPFFLFIVGVAIAL 90 (470)
Q Consensus 26 ~~~~~~~~Ri~slD~lRGlai~~Milvn~~~~~~~~----l~h~~w-~G~-----~~~Dlv-----fP~Flfl~G~s~~l 90 (470)
..|+..+||+.++|++||+|+++++++|...+.+|. ..+..| .+. -+.|++ .|+|.|++|+++.+
T Consensus 4 ~~p~~~~eRi~~LDilRG~AlLGILl~Ni~~F~~p~~~~~~~~~~~~s~~D~~a~~~v~~f~~~KF~~lFs~LFG~G~~~ 83 (394)
T COG2311 4 LQPTAQRERILTLDILRGFALLGILLVNISAFGYPGAAYLNPWSGWLSPLDAWAWALVDLFAQGKFLTLFSFLFGVGLAM 83 (394)
T ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhCchHHHhCcCcccCChHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Confidence 446677899999999999999999999987665541 112222 111 133443 79999999999999
Q ss_pred HhccCCchhHH-HHHHHHHHHHHHHHHHHHHhccCCCCcccccccccchhhhchHHHHHHHHHHHHHHHHHHcccCCCcc
Q 012127 91 ALKRIPDRADA-VKKVIFRTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLVEIFTKDVQDKD 169 (470)
Q Consensus 91 ~~~r~~~~~~~-~~~~~~R~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~r~~gVLq~I~~~y~v~all~l~~~~~~~~~ 169 (470)
.++|+.+|++. .+..+||...|+++|++|..+. |.| ||.+.|.++|++++.+.++++|+
T Consensus 84 ~~~r~~~~g~~~~~~~~RR~~~Lll~G~iH~~fi-----------------W~G---DIL~~Ya~~g~ill~~~~~~~k~ 143 (394)
T COG2311 84 MLRRAARKGRRWVALYARRLLLLLLLGLIHALFI-----------------WDG---DILLAYALTGLILLLFRRRKPKT 143 (394)
T ss_pred HHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHH-----------------hcc---hHHHHHHHHHHHHHHHHhccccH
Confidence 99998888866 5667999999999999997632 446 77789999999999999999887
Q ss_pred c
Q 012127 170 Q 170 (470)
Q Consensus 170 ~ 170 (470)
+
T Consensus 144 l 144 (394)
T COG2311 144 L 144 (394)
T ss_pred H
Confidence 4
No 4
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=99.80 E-value=1.5e-18 Score=167.38 Aligned_cols=113 Identities=33% Similarity=0.409 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCC-Cccc-cc-cC--cccchhhHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Q 012127 34 RLASLDIFRGLAVALMILVDHAGG-DWPE-IS-HA--PWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFR 108 (470)
Q Consensus 34 Ri~slD~lRGlai~~Milvn~~~~-~~~~-l~-h~--~w~G~~~~DlvfP~Flfl~G~s~~l~~~r~~~~~~~~~~~~~R 108 (470)
|+.++|++||+|+++|+++|.... .++. .+ +. .+....+.|.++|.|+|++|+|++++.+|+.++ ++..||
T Consensus 1 Ri~~lD~~RGlaii~Mi~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ap~F~fl~G~s~~l~~~~~~~~----~~~~~R 76 (223)
T PF07786_consen 1 RIPSLDALRGLAIIGMILVHFLFDLNYFGGWPQSWFGSFFWRFFRGLAAPLFLFLAGISLALSTGRRRRR----RKFLKR 76 (223)
T ss_pred CcHHHHHHHHHHHHhhhHhhCcChHhhcCccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccch----hHHHHH
Confidence 899999999999999999998653 1111 11 21 133456789999999999999999999887665 788899
Q ss_pred HHHHHHHHHHHHhccCCCCcccccccccchhhhchHHHHHHHHHHHHHHH
Q 012127 109 TLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLV 158 (470)
Q Consensus 109 ~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~r~~gVLq~I~~~y~v~all 158 (470)
++.|+++|++++.... ...++...+.||||+||+++++++++
T Consensus 77 ~~~l~~~g~~i~~~~~--------~~~~~~~i~~gIL~~ig~~~ll~~~~ 118 (223)
T PF07786_consen 77 GLKLFLLGLLINLLTF--------FFFPEGFIYFGILQFIGLSMLLAALF 118 (223)
T ss_pred HHHHHHHHHHHHHHHH--------HhcCCceeehhHHHHHHHHHHHHHHH
Confidence 9999999999876311 11223444779999999999888866
No 5
>PRK10835 hypothetical protein; Provisional
Probab=99.77 E-value=1.1e-16 Score=166.10 Aligned_cols=103 Identities=24% Similarity=0.328 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccc-------ccc--Ccccch--hhHHH-----HHHHHHHHHHHHHHHHhccCCchhHH
Q 012127 38 LDIFRGLAVALMILVDHAGGDWPE-------ISH--APWNGC--NLADF-----VMPFFLFIVGVAIALALKRIPDRADA 101 (470)
Q Consensus 38 lD~lRGlai~~Milvn~~~~~~~~-------l~h--~~w~G~--~~~Dl-----vfP~Flfl~G~s~~l~~~r~~~~~~~ 101 (470)
+|++||+|+++++++|...+..|. ..+ +.+|.. .+.|+ .+|+|.+++|+|+.+..+|.++
T Consensus 1 lD~lRGfALlGIllvNi~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~gKf~~LFs~LFG~G~~l~~~r~~~---- 76 (373)
T PRK10835 1 LDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAISPSDAWTWAILDLVAQVKFLTLFALLFGAGLQLLLPRGKR---- 76 (373)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCccccccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhH----
Confidence 699999999999999975432221 111 111111 12233 3799999999999999875222
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCcccccccccchhhhchHHHHHHHHHHHHHHHHHHcccCC
Q 012127 102 VKKVIFRTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLVEIFTKDVQ 166 (470)
Q Consensus 102 ~~~~~~R~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~r~~gVLq~I~~~y~v~all~l~~~~~~ 166 (470)
...||...|+++|++|.... |.| ||...|+++|++++++.+++
T Consensus 77 --~~~rRl~~Ll~~GliH~~ll-----------------w~G---DIL~~YAv~Gl~l~~~~~~~ 119 (373)
T PRK10835 77 --WIQSRLTLLVLLGFIHGLLF-----------------WDG---DILLAYGLVGLICWRLIRDA 119 (373)
T ss_pred --HHHHHHHHHHHHHHHHHHHH-----------------ccc---hHHHHHHHHHHHHHHHHhcc
Confidence 35699999999999997532 324 44459999999999888864
No 6
>COG3503 Predicted membrane protein [Function unknown]
Probab=99.58 E-value=8.8e-14 Score=136.23 Aligned_cols=121 Identities=26% Similarity=0.329 Sum_probs=89.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCCCC-c-cccccCcc-cc--hhhHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Q 012127 32 TQRLASLDIFRGLAVALMILVDHAGGD-W-PEISHAPW-NG--CNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVI 106 (470)
Q Consensus 32 ~~Ri~slD~lRGlai~~Milvn~~~~~-~-~~l~h~~w-~G--~~~~DlvfP~Flfl~G~s~~l~~~r~~~~~~~~~~~~ 106 (470)
.+|+.+||++||++|+.|++-|...+. + ..++-+.- .| ..++..+.|.|+|++|+|..++-+|..+| .++..
T Consensus 13 ~~R~~~ID~LRGla~l~MalyHf~~dl~ffg~~dl~~ta~g~~r~~ar~~A~~FlFLaG~Sl~L~~~r~~~r---~~~l~ 89 (323)
T COG3503 13 PNRLGEIDILRGLALLAMALYHFFWDLEFFGYMDLATTALGLWRYFARLIASSFLFLAGVSLSLSHSRGLRR---WRFLV 89 (323)
T ss_pred ccchhhhHHHhHHHHHHHHHHHHHhhhhhcCccccchhhhhHHHHHHHHHHHHHHHHHhhHheeeccccccc---hHHHH
Confidence 389999999999999999999965431 1 11221111 11 34788999999999999999998776653 78899
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccccccccchhhhchHHHHHHHHHHHHHHHHHHccc
Q 012127 107 FRTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLVEIFTKD 164 (470)
Q Consensus 107 ~R~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~r~~gVLq~I~~~y~v~all~l~~~~ 164 (470)
||.+.|...++.++..-+ +.+ ++++.++|||+.||++.++... ++++++
T Consensus 90 kRgL~l~~l~l~It~~Tw-------f~~-P~sfI~fgILh~igLa~ll~~~-fl~lP~ 138 (323)
T COG3503 90 KRGLKLAALALAITAVTW-------FAF-PDSFIFFGILHAIGLASLLGAA-FLWLPR 138 (323)
T ss_pred HHHHHHHHHHHHHHHeee-------Eec-CCceehHHHHHHHHHHHHHHHH-HHhCch
Confidence 999999999999976311 112 3667789999999999977664 455543
No 7
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.08 E-value=6.3e-08 Score=100.11 Aligned_cols=82 Identities=27% Similarity=0.363 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCccccccCcccchhhHHHHHHHHHHHHHHHHHHHhccCCchh---HHHHHHHHHHH
Q 012127 34 RLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRA---DAVKKVIFRTL 110 (470)
Q Consensus 34 Ri~slD~lRGlai~~Milvn~~~~~~~~l~h~~w~G~~~~DlvfP~Flfl~G~s~~l~~~r~~~~~---~~~~~~~~R~~ 110 (470)
|...||.+||++++.|..-|.+++.+..+.+.++ ++.|- ...|+|++|++..+.+.|+.+|+ ...+|+.||+.
T Consensus 1 Rd~riD~~RGlaL~~Ifi~Hip~~~~~~~T~~~~---Gfsda-AE~FVflSG~~~gl~Y~~~~~~~g~~~~~~r~~~Ra~ 76 (358)
T PF10129_consen 1 RDLRIDFFRGLALVMIFIDHIPGNVLEWFTLRNF---GFSDA-AEGFVFLSGYAAGLAYGRRFRRRGLWAATRRLWRRAW 76 (358)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCcHHHHhccccc---cCCCc-chhHhhHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHH
Confidence 6778999999999766555555544333334333 34443 36899999999999998775443 34788999998
Q ss_pred HHHHHHHHH
Q 012127 111 KLLFWGILL 119 (470)
Q Consensus 111 ~L~~lG~~~ 119 (470)
.|..--+.+
T Consensus 77 ~lY~a~i~l 85 (358)
T PF10129_consen 77 QLYVAHIAL 85 (358)
T ss_pred HHHHHHHHH
Confidence 887665544
No 8
>PF01757 Acyl_transf_3: Acyltransferase family; InterPro: IPR002656 This entry contains a range of acyltransferase enzymes as well as yet uncharacterised proteins from Caenorhabditis elegans. It also includes the protein OatA. The pathogenic bacteria, Staphylococcus aureus, is able to cause persistent infections due to its ability to resist the immune defence system. Lysozyme, a cell wall-lytic enzyme, is one of the first defence compounds induced in serum and tissues after the onset of infection. S. aureus has complete resistance to lysozyme action by O-acetylating its peptidoglycan (PG) by O-acetyltransferase (OatA) [, ]. Staphylococcus bacteria are one of the only bacterial genera that are resistant to lysozyme and tend to colonise the skin and mucosa of humans and animals []. OatA is an integral membrane protein. This entry also includes NolL proteins. NolL-dependent acetylation is specific for the fucosyl penta-N-acetylglucosamine species. In addition, the NolL protein caused elevated production of lipo-chitin oligosaccharides (LCOs). The NolL protein obtained from Rhizobium loti (Mesorhizobium loti) functions as an acetyl transferase [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=98.51 E-value=9e-05 Score=72.62 Aligned_cols=54 Identities=26% Similarity=0.450 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccc-cccCcc-cc-h---hhHHHHHHHHHHHHHHHHH
Q 012127 36 ASLDIFRGLAVALMILVDHAGGDWPE-ISHAPW-NG-C---NLADFVMPFFLFIVGVAIA 89 (470)
Q Consensus 36 ~slD~lRGlai~~Milvn~~~~~~~~-l~h~~w-~G-~---~~~DlvfP~Flfl~G~s~~ 89 (470)
.++|.+||++++++++.|......+. ...... .. . .......|+|.++.|+.+.
T Consensus 2 ~~iD~lR~ia~l~Vv~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ff~iSG~~~~ 61 (340)
T PF01757_consen 2 YWIDGLRGIAILLVVFGHSFIFYFPPPFQGWPIFDSFSIFLFIGRFAVPLFFFISGYLLA 61 (340)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcccccccchhhhhHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 58999999999999998875421111 011000 00 0 3455668999999999998
No 9
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=98.33 E-value=8.7e-06 Score=74.80 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccchhHhhHhcHHHHHHHHHhhhhHHHHhh
Q 012127 360 TSGAAALVFSAIYALVDIWNLKYPFLPLAWIGMNAMLVYVMAAEGIFAGFI 410 (470)
Q Consensus 360 t~G~a~l~La~~y~l~d~~~~~~~~~pf~~~G~naL~~Yl~~~~~ii~~~~ 410 (470)
....+....+++..+++..+.++..+||+.+||||||+|+.| ++++..+
T Consensus 60 ~~~~a~~y~~l~~ll~~~~~~~~~~~~l~~~GrmaLT~Yi~q--sii~~~l 108 (163)
T PF04235_consen 60 GPLLALGYVALLILLCQKRPRQRLLRPLAAVGRMALTNYILQ--SIIGTLL 108 (163)
T ss_pred HHHHHHHHHHHHHHHHHHcCccHHHHHHHHHhhHHHHHHHHH--HHHHHHH
Confidence 344555556666688888888889999999999999999999 8888774
No 10
>COG4645 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.17 E-value=0.00031 Score=70.67 Aligned_cols=87 Identities=22% Similarity=0.376 Sum_probs=62.0
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhcCCCCccccccCcccchhhHHHHHHHHHHHHHHHHHHHhccCCchh-HH--HHHH
Q 012127 29 HLKTQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRA-DA--VKKV 105 (470)
Q Consensus 29 ~~~~~Ri~slD~lRGlai~~Milvn~~~~~~~~l~h~~w~G~~~~DlvfP~Flfl~G~s~~l~~~r~~~~~-~~--~~~~ 105 (470)
+-..+|...||.+||++++.|.+-|.+++.+..+.|.+. ++.|- .-.|+|+.|++..+++.|+..++ +. ..|+
T Consensus 18 ~v~mkRdtriDv~Ral~Lv~IfiNHvpgt~le~itHknf---gfsda-AEaFVliSGllvgmaYsrKf~~ggrla~~lki 93 (410)
T COG4645 18 AVPMKRDTRIDVFRALALVTIFINHVPGTILEEITHKNF---GFSDA-AEAFVLISGLLVGMAYSRKFMKGGRLAGTLKI 93 (410)
T ss_pred cCccCchhHHHHHHHHHHHHHHHhcccHHHHHHhhcccc---ccccc-chhhhhHHHHHHHHHHhhhhccCcHHHHHHHH
Confidence 334589999999999999887554445544444667653 34443 35799999999999998876554 22 4588
Q ss_pred HHHHHHHHH---HHHHH
Q 012127 106 IFRTLKLLF---WGILL 119 (470)
Q Consensus 106 ~~R~~~L~~---lG~~~ 119 (470)
.||+..|.. .|.++
T Consensus 94 WrRA~~LY~~himtl~i 110 (410)
T COG4645 94 WRRAMVLYVAHIMTLVI 110 (410)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 999999886 45444
No 11
>PRK03854 opgC glucans biosynthesis protein; Provisional
Probab=98.11 E-value=0.0083 Score=62.37 Aligned_cols=90 Identities=20% Similarity=0.144 Sum_probs=57.0
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhcCC--CCccc----cccCcccc-h-hhHH-HHHHHHHHHHHHHHHHHhccCCchh
Q 012127 29 HLKTQRLASLDIFRGLAVALMILVDHAG--GDWPE----ISHAPWNG-C-NLAD-FVMPFFLFIVGVAIALALKRIPDRA 99 (470)
Q Consensus 29 ~~~~~Ri~slD~lRGlai~~Milvn~~~--~~~~~----l~h~~w~G-~-~~~D-lvfP~Flfl~G~s~~l~~~r~~~~~ 99 (470)
+++++|...+|.+||+++++.++.|... ...++ .+.+.|.. . ...+ ...|+|.|+.|+....+.+|+ +.+
T Consensus 3 ~~~~~R~~~lD~lR~~a~l~VV~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~mplFf~iSG~~~~~~~~~~-~~~ 81 (375)
T PRK03854 3 PVPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAEPSLWLTLLNDFIHAFRMQVFFVISGYFSYMLFLRY-PPK 81 (375)
T ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHHHhccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHH
Confidence 4456899999999999999999888632 11111 11122211 1 1112 237999999999988876554 333
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012127 100 DAVKKVIFRTLKLLFWGILL 119 (470)
Q Consensus 100 ~~~~~~~~R~~~L~~lG~~~ 119 (470)
+-.++-++|.+.-++++.++
T Consensus 82 ~f~~~R~~rl~iP~l~~~~~ 101 (375)
T PRK03854 82 RWLKVRLERVGIPMLTAIPL 101 (375)
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 44566677777777776543
No 12
>PF06423 GWT1: GWT1; InterPro: IPR009447 Glycosylphosphatidylinositol (GPI) is a conserved post-translational modification to anchor cell surface proteins to plasma membrane in eukaryotes. GWT1 is involved in GPI anchor biosynthesis; it is required for inositol acylation in yeast [].; GO: 0016746 transferase activity, transferring acyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=97.72 E-value=0.0004 Score=62.22 Aligned_cols=117 Identities=19% Similarity=0.269 Sum_probs=79.3
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHhcccc-h-----HHH---HHHHHHHHHHHHHHHHHHhhhcCccccCCCChHHHHHH
Q 012127 289 PEGLLSSVSSILSTIIGVHFGHVIIHTKG-H-----LAR---LKQWVTMGFALLIFGLTLHFTNAIPLNKQLYTLSYVCV 359 (470)
Q Consensus 289 peGll~tl~~i~~~LlG~~aG~~l~~~~~-~-----~~~---~~~l~~~G~~ll~lGl~l~~~~~~pi~K~lwT~S~vl~ 359 (470)
-||++|...-++..++|...|+.+.+.+. . ++. ..+++.+.+++..+-.+++. ...|++.+....+|++.
T Consensus 3 rEGi~S~~GY~aIyl~g~~~G~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~vSRRlaNl~Yvlw 81 (136)
T PF06423_consen 3 REGIFSLPGYLAIYLIGVSLGRYILPPSSSSNSSSRRQWIKLLIKLLILSFIFWALYYLLNS-YIEPVSRRLANLPYVLW 81 (136)
T ss_pred cchhhhHHHHHHHHHHHHHHhhhhhCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-CCCchhHHhcchHHHHH
Confidence 58988888889999999999996643222 2 122 22344444444434444432 25789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCccc-----chhHhhHhcHHHHHHHHHhhhhHHHH
Q 012127 360 TSGAAALVFSAIYALVDIWNLKY-----PFLPLAWIGMNAMLVYVMAAEGIFAG 408 (470)
Q Consensus 360 t~G~a~l~La~~y~l~d~~~~~~-----~~~pf~~~G~naL~~Yl~~~~~ii~~ 408 (470)
..+.....++.++.+-+.....+ ....++.+.+|.|+.++++ -++..
T Consensus 82 v~a~n~~~l~~~~~i~~~~~~~~~~~~~~~~l~~aiN~N~L~~FLla--NllTG 133 (136)
T PF06423_consen 82 VLAFNTFFLALYLLIELLLFRPKASYSKTPCLLDAINRNGLFVFLLA--NLLTG 133 (136)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccHHHHHHcccccHHHHHH--HHHHc
Confidence 99988777776554444332222 4567899999999999998 55543
No 13
>COG3274 Predicted O-acyltransferase [General function prediction only]
Probab=96.94 E-value=0.39 Score=48.69 Aligned_cols=57 Identities=18% Similarity=0.384 Sum_probs=40.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCCC-Cccc-ccc-Ccc---cch-hhHHHHHHHHHHHHHHHH
Q 012127 32 TQRLASLDIFRGLAVALMILVDHAGG-DWPE-ISH-APW---NGC-NLADFVMPFFLFIVGVAI 88 (470)
Q Consensus 32 ~~Ri~slD~lRGlai~~Milvn~~~~-~~~~-l~h-~~w---~G~-~~~DlvfP~Flfl~G~s~ 88 (470)
++|+.++|.+|++|++..+.+|.... .+.+ ..| ..| |+. +....+.|+|..+.|.-+
T Consensus 2 ~~ri~wiD~~r~iA~f~VV~iH~~~~~~t~~~~vs~~~w~i~nvlns~sr~aVPLFfmISGyL~ 65 (332)
T COG3274 2 QPRIVWIDLLRSIACFMVVMIHSTLWSVTEAHFVSPTLWIIANVLNSASRVAVPLFFMISGYLF 65 (332)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999888887432 2221 122 224 443 456677999999999643
No 14
>COG5062 Uncharacterized membrane protein [Function unknown]
Probab=94.44 E-value=0.32 Score=49.67 Aligned_cols=111 Identities=19% Similarity=0.215 Sum_probs=63.8
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHHHHHHHhhhcCccc-cCCCChHHHHHHHHHHH
Q 012127 287 FEPEGLLSSVSSILSTIIGVHFGHVI-IHTKGHLARLKQWVTMGFALLIFGLTLHFTNAIPL-NKQLYTLSYVCVTSGAA 364 (470)
Q Consensus 287 ~dpeGll~tl~~i~~~LlG~~aG~~l-~~~~~~~~~~~~l~~~G~~ll~lGl~l~~~~~~pi-~K~lwT~S~vl~t~G~a 364 (470)
-+-||+.+.+|-++..+.|...|+.. .+++.+++.++.+...-+..+.+-.+.++ .|. +.++....|++...-+-
T Consensus 265 ~NrEGI~sll~yisIfl~g~~tg~vvf~~kpTr~~~wk~~~~~~af~lciylVfnf---~s~ssRRlaNlpfv~wi~~lh 341 (429)
T COG5062 265 SNREGITSLLPYISIFLMGADTGKVVFKKKPTRKKAWKIIILYNAFFLCVYLVFNF---YSTSSRRLANLPFVMWIMLLH 341 (429)
T ss_pred hchhhhhhcchhhhheeeecccceEEecCCCchHHHHHHHHHHHHHHHHHHHHHhh---cccchhhhcCccHHHHHHHHH
Confidence 36799999999999999999999955 33333333344443221211222222233 344 66777777887766444
Q ss_pred HHHHHHHHHHHhhcC--cccchhHhhHhcHHHHHHHHHh
Q 012127 365 ALVFSAIYALVDIWN--LKYPFLPLAWIGMNAMLVYVMA 401 (470)
Q Consensus 365 ~l~La~~y~l~d~~~--~~~~~~pf~~~G~naL~~Yl~~ 401 (470)
. .....|.+.|... +.+..+-|...-.|-+..+...
T Consensus 342 ~-f~lt~y~lfd~ts~~yn~v~~~fes~n~n~llvfs~a 379 (429)
T COG5062 342 T-FHLTVYELFDRTSKIYNLVMHRFESKNLNFLLVFSNA 379 (429)
T ss_pred H-HHhheeeeeecccchhhhHHHHHHhcccchHHHHHHH
Confidence 3 3444566777532 2344555665555555555544
No 15
>COG3594 NolL Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]
Probab=92.23 E-value=16 Score=37.79 Aligned_cols=51 Identities=25% Similarity=0.442 Sum_probs=35.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCCCccccccCcccch---hhHHHHHHHHHHHHHHH
Q 012127 31 KTQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGC---NLADFVMPFFLFIVGVA 87 (470)
Q Consensus 31 ~~~Ri~slD~lRGlai~~Milvn~~~~~~~~l~h~~w~G~---~~~DlvfP~Flfl~G~s 87 (470)
+++|-.++|+.||+-|++.++-|......| |.-. -..-.-+|+|.|+.|+-
T Consensus 1 ~~~R~~~~D~AKGigIlLVV~GH~~~p~~~------~~~~l~~~IysFHMPlFf~ISGyf 54 (343)
T COG3594 1 MKKRDLWFDAAKGIGILLVVFGHILQPISP------WLSVLYKFIYSFHMPLFFFISGYF 54 (343)
T ss_pred CchhHHHHhHhhccchhhhhhhhhcccccc------cchHHHHHHHHHHHHHHHhhhhhc
Confidence 368999999999999999988887543222 3110 01112279999999974
No 16
>COG1835 Predicted acyltransferases [Lipid metabolism]
Probab=88.48 E-value=0.38 Score=50.18 Aligned_cols=70 Identities=23% Similarity=0.257 Sum_probs=46.1
Q ss_pred hhccccccchhHHHHHHHHHHHHHHHHHhcCCCCccccccCcc--cchhhHHHHHHHHHHHHHHHHHHHhccCCchhH
Q 012127 25 QEKSHLKTQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPW--NGCNLADFVMPFFLFIVGVAIALALKRIPDRAD 100 (470)
Q Consensus 25 ~~~~~~~~~Ri~slD~lRGlai~~Milvn~~~~~~~~l~h~~w--~G~~~~DlvfP~Flfl~G~s~~l~~~r~~~~~~ 100 (470)
+......++|..++|.+||+|.+..++.|......+ ++..+ +|..-.| .|..+.|+-+.-...++.++++
T Consensus 5 ~~~~~~~~~~~~~ldgLR~iAal~Vv~~H~~~~~~~--~~~g~~~~g~~gVd----iFFvlSGfli~~~~~~~~~~~~ 76 (386)
T COG1835 5 MTAINSSGGRLPGLDGLRAIAALLVVLYHAGFQIGP--GPGGFVGRGVLGVD----LFFVLSGFLITRSLLRSAAAPV 76 (386)
T ss_pred cccccccccccCCcHHHHHHHHHHHHHHHccccccC--CCCcccccccccee----EeeeccHHHHHHHHHHHhhcCC
Confidence 344445578999999999999998888886432111 11111 2223344 6889999999998876655444
No 17
>PF15345 TMEM51: Transmembrane protein 51
Probab=71.15 E-value=2.7 Score=40.77 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Q 012127 352 YTLSYVCVTSGAAALVFSAIYALVDIWNLKY 382 (470)
Q Consensus 352 wT~S~vl~t~G~a~l~La~~y~l~d~~~~~~ 382 (470)
-|..||++.+|+++++|++|.-+-|.++.+.
T Consensus 58 ~SVAyVLVG~Gv~LLLLSICL~IR~KRr~rq 88 (233)
T PF15345_consen 58 FSVAYVLVGSGVALLLLSICLSIRDKRRRRQ 88 (233)
T ss_pred EEEEEehhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3457999999999999999988888776543
No 18
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=41.75 E-value=88 Score=26.57 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=18.0
Q ss_pred CcchhhhHHH--HHHHHHHHHHHHHHhc
Q 012127 289 PEGLLSSVSS--ILSTIIGVHFGHVIIH 314 (470)
Q Consensus 289 peGll~tl~~--i~~~LlG~~aG~~l~~ 314 (470)
--|+++++.+ ++..++|++.|+|+.+
T Consensus 41 ~l~~~g~IG~~~v~pil~G~~lG~WLD~ 68 (100)
T TIGR02230 41 GLGMFGLIGWSVAIPTLLGVAVGIWLDR 68 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566664 5677889999988854
No 19
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=41.40 E-value=35 Score=24.94 Aligned_cols=31 Identities=13% Similarity=0.368 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhccCCc--hhHHHHHHHHH
Q 012127 78 PFFLFIVGVAIALALKRIPD--RADAVKKVIFR 108 (470)
Q Consensus 78 P~Flfl~G~s~~l~~~r~~~--~~~~~~~~~~R 108 (470)
|+|...+|++.++..+++.. +|.....+++|
T Consensus 9 P~~av~iG~~ayyl~e~R~~rp~g~~L~eLl~~ 41 (47)
T PF11654_consen 9 PLFAVFIGTSAYYLYENREGRPEGHSLNELLRR 41 (47)
T ss_pred hHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHH
Confidence 89999999999999987654 34445555443
No 20
>PF05857 TraX: TraX protein; InterPro: IPR008875 This family consists of several bacterial TraX proteins. TraX is responsible for the N-terminal acetylation of F-pilin subunits [].
Probab=40.01 E-value=94 Score=29.63 Aligned_cols=63 Identities=19% Similarity=0.271 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccccccCcccchhhHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Q 012127 37 SLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFRTLK 111 (470)
Q Consensus 37 slD~lRGlai~~Milvn~~~~~~~~l~h~~w~G~~~~DlvfP~Flfl~G~s~~l~~~r~~~~~~~~~~~~~R~~~ 111 (470)
|-|.+.=+|++.|++=|.. ... .++.+| -.....+.||.|.|+..-+..- .++.+|..+|...
T Consensus 2 s~~~LK~iA~i~M~iDHi~-~~~--~~~~~~-~~~iGR~afPlF~f~~~eG~~~--------T~n~~kY~~RL~~ 64 (219)
T PF05857_consen 2 SGFQLKIIAIIAMLIDHIG-FLF--FPDGPW-LRIIGRIAFPLFAFLLVEGFFH--------TRNRKKYLLRLLI 64 (219)
T ss_pred chhHHHHHHHHHHHHHhhc-ccc--cCcchH-HHHhhHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHH
Confidence 5688889999999876544 211 122223 2235678899999998877654 2334566666544
No 21
>PF10295 DUF2406: Uncharacterised protein (DUF2406); InterPro: IPR018809 This entry represents a family of small proteins conserved in fungi. The function is not known.
Probab=37.47 E-value=24 Score=27.86 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=18.4
Q ss_pred cccCCCcchhhhccccccchhHHHHHHHHHH
Q 012127 15 IISEPDVSDQQEKSHLKTQRLASLDIFRGLA 45 (470)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~Ri~slD~lRGla 45 (470)
.|.+||.|..++..-+. =||.+||+=
T Consensus 39 ~I~~PD~SNPTR~R~ER-----PLDTIRsFE 64 (69)
T PF10295_consen 39 PITDPDRSNPTRSRDER-----PLDTIRSFE 64 (69)
T ss_pred ccCCCCCCCCCcccccC-----chHHHHHHH
Confidence 57899998766554433 489999974
No 22
>COG3619 Predicted membrane protein [Function unknown]
Probab=34.38 E-value=2.1e+02 Score=27.96 Aligned_cols=55 Identities=25% Similarity=0.271 Sum_probs=39.8
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 012127 65 APWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFRTLKLLFWGILLQG 121 (470)
Q Consensus 65 ~~w~G~~~~DlvfP~Flfl~G~s~~l~~~r~~~~~~~~~~~~~R~~~L~~lG~~~~~ 121 (470)
++++.....+...|.+.|++|....-.++|+..| .....+.+...++.+++....
T Consensus 51 ~~~~~~~a~~~~~pii~Fv~Gv~~~~~~~r~~~~--~~~~~l~~~~~ll~~~v~~~~ 105 (226)
T COG3619 51 AEGDAALAVLLLLPILAFVLGVAAAELISRRATR--SFIPVLLLVSLLLALIALLAL 105 (226)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHH
Confidence 4455566778899999999999998888776554 233455677777777776654
No 23
>COG4763 Predicted membrane protein [Function unknown]
Probab=34.25 E-value=37 Score=34.56 Aligned_cols=44 Identities=18% Similarity=0.349 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhcCcccchhHhhHhcHHHHHHHHHhhhhHHHHhhhh
Q 012127 366 LVFSAIYALVDIWNLKYPFLPLAWIGMNAMLVYVMAAEGIFAGFING 412 (470)
Q Consensus 366 l~La~~y~l~d~~~~~~~~~pf~~~G~naL~~Yl~~~~~ii~~~~~~ 412 (470)
..+.++|-+++..+ ++....+++.|+|+|.+|+.| .+...++.+
T Consensus 274 V~l~~~~~l~~~fg-~~v~e~L~~iG~htl~IY~~h--~i~~slf~g 317 (388)
T COG4763 274 VILKLFYQLEQRFG-MRVTELLNVIGSHTLAIYTTH--RILVSLFSG 317 (388)
T ss_pred HHHHHHHHHHHHcC-chHHHHHHHhccCceEEEeeh--hhHHHHHHH
Confidence 45788888888776 457889999999999999999 565555544
Done!