Query 012127
Match_columns 470
No_of_seqs 225 out of 990
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 03:18:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ar0_A Type IV pilus biogenesi 14.6 91 0.0031 26.2 2.6 11 8-18 4-14 (128)
2 2l2l_B Methyl-CPG-binding doma 11.2 16 0.00053 24.2 -2.5 25 12-36 3-27 (36)
3 2w7q_A Outer-membrane lipoprot 10.9 10 0.00034 34.3 -5.0 10 6-15 1-10 (204)
4 3n2f_G Na+/K+ ATPase gamma sub 9.9 1E+02 0.0034 19.6 1.0 28 64-91 4-31 (31)
5 2ks1_B Epidermal growth factor 8.7 3.5E+02 0.012 18.4 3.5 12 456-467 30-41 (44)
6 2jo1_A Phospholemman; FXYD1, N 8.4 3.4E+02 0.012 20.5 3.5 29 65-93 11-39 (72)
7 2k1k_A Ephrin type-A receptor 7.9 4.2E+02 0.014 17.3 3.5 10 456-465 29-38 (38)
8 2jp3_A FXYD domain-containing 7.3 3.3E+02 0.011 20.3 3.0 29 65-93 12-40 (67)
9 2k6i_A Uncharacterized protein 7.2 1.3E+02 0.0045 21.7 0.8 16 8-23 4-19 (56)
10 1w4v_A Thioredoxin, mitochondr 6.2 1.1E+02 0.0039 23.9 0.0 8 7-14 2-9 (119)
No 1
>4ar0_A Type IV pilus biogenesis and competence protein P; transport, secretin type II secretion system; NMR {Neisseria meningitidis}
Probab=14.64 E-value=91 Score=26.19 Aligned_cols=11 Identities=36% Similarity=0.697 Sum_probs=7.4
Q ss_pred cccCCCccccC
Q 012127 8 TTHHHPLIISE 18 (470)
Q Consensus 8 ~~~~~~~~~~~ 18 (470)
..||||+.-.|
T Consensus 4 ~~~~~p~~~~~ 14 (128)
T 4ar0_A 4 HHHHHPMSDYD 14 (128)
T ss_dssp SCSSSCSCSTT
T ss_pred cccCCCCcccC
Confidence 46889995443
No 2
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=11.18 E-value=16 Score=24.16 Aligned_cols=25 Identities=20% Similarity=0.500 Sum_probs=21.2
Q ss_pred CCccccCCCcchhhhccccccchhH
Q 012127 12 HPLIISEPDVSDQQEKSHLKTQRLA 36 (470)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~Ri~ 36 (470)
++..++|.|...|++......+|+.
T Consensus 3 ~~~~Vte~DIr~QE~rV~~aR~rL~ 27 (36)
T 2l2l_B 3 KAFIVTDEDIRKQEERVQQVRKKLE 27 (36)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeCHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999998888777765
No 3
>2w7q_A Outer-membrane lipoprotein carrier protein; periplasmic chaperone, lipoprotein transport, transport, CHA protein transport; 1.88A {Pseudomonas aeruginosa}
Probab=10.95 E-value=10 Score=34.25 Aligned_cols=10 Identities=60% Similarity=0.979 Sum_probs=0.0
Q ss_pred cccccCCCcc
Q 012127 6 AETTHHHPLI 15 (470)
Q Consensus 6 ~~~~~~~~~~ 15 (470)
||..|||-|+
T Consensus 1 ~~~~~~~~~~ 10 (204)
T 2w7q_A 1 AEHHHHHHLV 10 (204)
T ss_dssp ----------
T ss_pred CCcccccccc
Confidence 5777888775
No 4
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=9.92 E-value=1e+02 Score=19.62 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=19.5
Q ss_pred cCcccchhhHHHHHHHHHHHHHHHHHHH
Q 012127 64 HAPWNGCNLADFVMPFFLFIVGVAIALA 91 (470)
Q Consensus 64 h~~w~G~~~~DlvfP~Flfl~G~s~~l~ 91 (470)
|-+|++.....+++-.-+|++|+.+.+|
T Consensus 4 ~yDy~tLrigGLi~a~vLfi~gi~iils 31 (31)
T 3n2f_G 4 YYDYETVRNGGLIFAALAFIVGLIIILS 31 (31)
T ss_dssp CCCHHHHHHHHTTTHHHHHHHHHHHHTC
T ss_pred CCChHHHhhcchhHHHHHHHHHHHHhcC
Confidence 3456666667777778888888877653
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=8.71 E-value=3.5e+02 Score=18.42 Aligned_cols=12 Identities=17% Similarity=0.019 Sum_probs=7.2
Q ss_pred HHHHHHHhccce
Q 012127 456 LVTGILHRFGIY 467 (470)
Q Consensus 456 ~i~~~l~rkki~ 467 (470)
++.+++.|||+.
T Consensus 30 ~~~~~~RRr~~~ 41 (44)
T 2ks1_B 30 GIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHTTTCC
T ss_pred HHHHHhhhhHhh
Confidence 345666677664
No 6
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=8.41 E-value=3.4e+02 Score=20.52 Aligned_cols=29 Identities=24% Similarity=0.505 Sum_probs=23.9
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHhc
Q 012127 65 APWNGCNLADFVMPFFLFIVGVAIALALK 93 (470)
Q Consensus 65 ~~w~G~~~~DlvfP~Flfl~G~s~~l~~~ 93 (470)
-+|+.+-..-++|-..+|++|+.+.+|-+
T Consensus 11 YDY~tLRiGGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 11 YDYQSLQIGGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp CSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhhccchHHHHHHHHHHHHHHHcCc
Confidence 35666667788899999999999999974
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=7.87 E-value=4.2e+02 Score=17.32 Aligned_cols=10 Identities=10% Similarity=-0.174 Sum_probs=7.1
Q ss_pred HHHHHHHhcc
Q 012127 456 LVTGILHRFG 465 (470)
Q Consensus 456 ~i~~~l~rkk 465 (470)
.++++++|||
T Consensus 29 ~l~~~~~rrr 38 (38)
T 2k1k_A 29 GILVFRSRRA 38 (38)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHHeecC
Confidence 3567788876
No 8
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=7.32 E-value=3.3e+02 Score=20.32 Aligned_cols=29 Identities=31% Similarity=0.539 Sum_probs=23.8
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHhc
Q 012127 65 APWNGCNLADFVMPFFLFIVGVAIALALK 93 (470)
Q Consensus 65 ~~w~G~~~~DlvfP~Flfl~G~s~~l~~~ 93 (470)
-+|+.+...-++|-..+|++|+.+.+|-+
T Consensus 12 YDY~tLRigGLifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 12 YDWESLQLGGLIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred cchHHheecchhhHHHHHHHHHHHHHcCc
Confidence 45666677788899999999999999864
No 9
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=7.20 E-value=1.3e+02 Score=21.74 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=7.6
Q ss_pred cccCCCccccCCCcch
Q 012127 8 TTHHHPLIISEPDVSD 23 (470)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (470)
..||||.=++-||+-.
T Consensus 4 ~~~~~~~~~~~~EvL~ 19 (56)
T 2k6i_A 4 HHHHHPMGVSVMEAIK 19 (56)
T ss_dssp ------CCCCCTTTSC
T ss_pred ccccCCCCCCHHHHHH
Confidence 3588999888887754
No 10
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=6.17 E-value=1.1e+02 Score=23.93 Aligned_cols=8 Identities=38% Similarity=0.659 Sum_probs=0.0
Q ss_pred ccccCCCc
Q 012127 7 ETTHHHPL 14 (470)
Q Consensus 7 ~~~~~~~~ 14 (470)
||+||||.
T Consensus 2 ~~~~~~~~ 9 (119)
T 1w4v_A 2 RGSHHHHH 9 (119)
T ss_dssp --------
T ss_pred CCcccccc
Confidence 55666654
Done!