Query 012127
Match_columns 470
No_of_seqs 225 out of 990
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 03:18:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012127.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012127hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90m_ f.23.25.1 (M:) PetM su 5.5 3E+02 0.022 15.8 3.1 18 296-313 10-27 (34)
2 d1xmec1 f.23.9.1 (C:2-34) Bact 4.9 3.2E+02 0.023 15.5 3.5 14 448-461 16-29 (33)
3 d1jb0j_ f.23.18.1 (J:) Subunit 4.6 3E+02 0.022 16.9 2.9 20 293-312 8-27 (41)
4 d1xrta2 c.1.9.6 (A:56-365) Two 3.4 1.8E+02 0.013 25.0 1.5 19 4-23 197-215 (310)
5 d1nfga2 c.1.9.6 (A:52-381) D-h 3.2 1.7E+02 0.013 25.7 1.1 20 3-23 205-224 (330)
6 d1l0ba2 c.15.1.3 (A:1705-1801) 3.2 2.3E+02 0.017 20.8 1.6 13 10-22 44-56 (97)
7 d1yqea1 c.56.7.1 (A:1-278) Hyp 2.9 2E+02 0.014 25.3 1.1 16 4-19 132-147 (278)
8 d2gfqa1 c.56.7.1 (A:1-274) Hyp 2.9 1.8E+02 0.013 25.5 0.9 16 4-19 134-149 (274)
9 d2r6gf1 e.70.1.1 (F:13-260) Ma 2.4 1.4E+03 0.1 18.7 6.6 30 387-418 55-85 (248)
10 d1gkra2 c.1.9.6 (A:55-379) L-h 2.4 1.5E+02 0.011 26.0 -0.6 20 3-23 204-223 (325)
No 1
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.46 E-value=3e+02 Score=15.79 Aligned_cols=18 Identities=22% Similarity=0.588 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 012127 296 VSSILSTIIGVHFGHVII 313 (470)
Q Consensus 296 l~~i~~~LlG~~aG~~l~ 313 (470)
+..+++.++|+..|-.+.
T Consensus 10 ~tmig~tl~glaigfvll 27 (34)
T d1q90m_ 10 LTMVGMTLVGLAIGFVLL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhe
Confidence 345778888888886443
No 2
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=4.91 E-value=3.2e+02 Score=15.53 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHH
Q 012127 448 FVEILFWGLVTGIL 461 (470)
Q Consensus 448 ~~~~~~w~~i~~~l 461 (470)
++.+++|..+-.++
T Consensus 16 l~ilvfw~gv~avf 29 (33)
T d1xmec1 16 LTILVFWLGVYAVF 29 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34566776554443
No 3
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=4.63 E-value=3e+02 Score=16.87 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 012127 293 LSSVSSILSTIIGVHFGHVI 312 (470)
Q Consensus 293 l~tl~~i~~~LlG~~aG~~l 312 (470)
+||-|.+++..++..||-+.
T Consensus 8 lstAPVla~~w~~~tAG~lI 27 (41)
T d1jb0j_ 8 LSTAPVLAAIWMTITAGILI 27 (41)
T ss_dssp TTBHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHH
Confidence 57778777777777777533
No 4
>d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]}
Probab=3.40 E-value=1.8e+02 Score=25.04 Aligned_cols=19 Identities=32% Similarity=0.580 Sum_probs=8.9
Q ss_pred cccccccCCCccccCCCcch
Q 012127 4 IKAETTHHHPLIISEPDVSD 23 (470)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (470)
+-+||++|| |..++.|+.+
T Consensus 197 vt~e~~ph~-L~l~~~~~~~ 215 (310)
T d1xrta2 197 ITCEVNPNH-LLFTEREVLN 215 (310)
T ss_dssp EEEEECGGG-GC--------
T ss_pred eecchHHHH-hhcccccccc
Confidence 568999998 6677777655
No 5
>d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii [TaxId: 329]}
Probab=3.21 E-value=1.7e+02 Score=25.75 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=13.9
Q ss_pred ccccccccCCCccccCCCcch
Q 012127 3 EIKAETTHHHPLIISEPDVSD 23 (470)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ 23 (470)
.+.+||+.|| |..+|.|++.
T Consensus 205 ~vt~Et~ph~-L~l~~~d~~~ 224 (330)
T d1nfga2 205 RALAETCTHY-LYLTKEDLER 224 (330)
T ss_dssp CEEECEEGGG-GTCCGGGGGC
T ss_pred cccccccchh-hhhhhhhhhc
Confidence 4678999998 4556666643
No 6
>d1l0ba2 c.15.1.3 (A:1705-1801) Breast cancer associated protein, BRCA1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.19 E-value=2.3e+02 Score=20.82 Aligned_cols=13 Identities=23% Similarity=0.659 Sum_probs=7.8
Q ss_pred cCCCccccCCCcc
Q 012127 10 HHHPLIISEPDVS 22 (470)
Q Consensus 10 ~~~~~~~~~~~~~ 22 (470)
..||+||.+||..
T Consensus 44 ~~~~viVvqpda~ 56 (97)
T d1l0ba2 44 GAHPIVLVQPSAW 56 (97)
T ss_dssp SSCCEEEEC----
T ss_pred CCeeEEEEcCCcc
Confidence 4599999999875
No 7
>d1yqea1 c.56.7.1 (A:1-278) Hypothetical protein AF0625 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=2.94 E-value=2e+02 Score=25.33 Aligned_cols=16 Identities=50% Similarity=0.727 Sum_probs=10.3
Q ss_pred cccccccCCCccccCC
Q 012127 4 IKAETTHHHPLIISEP 19 (470)
Q Consensus 4 ~~~~~~~~~~~~~~~~ 19 (470)
+--|.|||=|.=++-|
T Consensus 132 vt~EaTHHGPt~l~~P 147 (278)
T d1yqea1 132 FTMEVTHHGPSEISKP 147 (278)
T ss_dssp EEECCSCSSCCCCCSC
T ss_pred EEEEEeccCCccCCCc
Confidence 4457888888644444
No 8
>d2gfqa1 c.56.7.1 (A:1-274) Hypothetical protein PH0006 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=2.91 E-value=1.8e+02 Score=25.50 Aligned_cols=16 Identities=38% Similarity=0.578 Sum_probs=9.7
Q ss_pred cccccccCCCccccCC
Q 012127 4 IKAETTHHHPLIISEP 19 (470)
Q Consensus 4 ~~~~~~~~~~~~~~~~ 19 (470)
+--|.|||-|.=++-|
T Consensus 134 vt~EaTHHGPt~l~~P 149 (274)
T d2gfqa1 134 VCYEATHHGPTELEVP 149 (274)
T ss_dssp EEECCSCSSCCCCCSB
T ss_pred EEEEEeccCCccCCCc
Confidence 3457788877644444
No 9
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=2.37 E-value=1.4e+03 Score=18.65 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=20.2
Q ss_pred hhHhcHHHHHHHHHhhhhHHHHh-hhhcccCCC
Q 012127 387 LAWIGMNAMLVYVMAAEGIFAGF-INGWYYGDP 418 (470)
Q Consensus 387 f~~~G~naL~~Yl~~~~~ii~~~-~~~~~~~~~ 418 (470)
....|.--|.+|++- -++++. +....++.+
T Consensus 55 yi~PG~~~l~~Fvi~--Pi~yT~~iaFTNy~tg 85 (248)
T d2r6gf1 55 YVYPGMAGMGLFVLF--PLVCTIAIAFTNYSST 85 (248)
T ss_dssp HHHHHHHHHHHHTHH--HHHHHHHGGGBCCSST
T ss_pred hhhhHHHHHHHHHHH--hheeEEEEEEEEcCCC
Confidence 345688888888887 788887 444444433
No 10
>d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]}
Probab=2.36 E-value=1.5e+02 Score=26.00 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=13.3
Q ss_pred ccccccccCCCccccCCCcch
Q 012127 3 EIKAETTHHHPLIISEPDVSD 23 (470)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ 23 (470)
.+.+||++||- ..++.|+.+
T Consensus 204 ~vt~et~ph~L-~lt~~~~~~ 223 (325)
T d1gkra2 204 DVHCESGPQYL-NITTDDAER 223 (325)
T ss_dssp CEEEEECHHHH-SCCGGGHHH
T ss_pred ceEEeeccccc-ccchhhhhc
Confidence 36789998884 456666543
Done!