Query 012128
Match_columns 470
No_of_seqs 26 out of 28
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 03:19:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012128.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012128hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1olma1 a.5.3.1 (A:1-75) Super 14.7 54 0.0039 23.1 2.9 22 267-288 36-58 (75)
2 d1auaa1 a.5.3.1 (A:4-96) N-ter 14.2 55 0.004 24.5 3.0 22 267-288 53-75 (93)
3 d2cvla1 d.79.1.1 (A:1-124) Put 11.7 62 0.0045 24.3 2.6 43 139-183 28-73 (124)
4 d1jfla1 c.78.2.1 (A:1-115) Asp 11.7 36 0.0026 25.9 1.2 37 320-359 79-115 (115)
5 d1r5la1 a.5.3.1 (A:25-90) Alph 10.6 1.3E+02 0.0097 21.0 4.0 36 267-304 26-62 (66)
6 d1he1a_ a.24.11.1 (A:) ExoS to 9.8 38 0.0027 28.3 0.7 19 336-358 52-70 (135)
7 d1wdya_ d.211.1.1 (A:) RNase L 9.4 64 0.0047 24.9 1.9 24 157-180 261-284 (285)
8 d1avqa_ c.52.1.13 (A:) lambda 8.4 61 0.0044 27.1 1.5 18 327-344 154-171 (228)
9 d1ykga1 c.23.5.2 (A:63-208) Su 8.4 92 0.0067 24.4 2.5 32 344-375 12-43 (146)
10 d1pvva2 c.78.1.1 (A:151-313) O 8.2 1.2E+02 0.0087 23.7 3.2 41 261-312 9-49 (163)
No 1
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.65 E-value=54 Score=23.11 Aligned_cols=22 Identities=9% Similarity=0.205 Sum_probs=19.2
Q ss_pred hhHHHHh-hcCCCHHHHHHHHHh
Q 012128 267 GVAYSYL-SSKLSAEAANSAFRI 288 (470)
Q Consensus 267 ~VVl~wL-a~KL~~~~An~~~R~ 288 (470)
..++||| |+|.+.+.|.++||.
T Consensus 36 ~~LlRFLrAr~fdv~kA~~ml~~ 58 (75)
T d1olma1 36 YFLLRWLRARSFDLQKSEAMLRK 58 (75)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHH
Confidence 6789999 679999999999974
No 2
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.22 E-value=55 Score=24.53 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=19.6
Q ss_pred hhHHHHh-hcCCCHHHHHHHHHh
Q 012128 267 GVAYSYL-SSKLSAEAANSAFRI 288 (470)
Q Consensus 267 ~VVl~wL-a~KL~~~~An~~~R~ 288 (470)
..++||| |+|.+.+.|.+||+.
T Consensus 53 ~~llRfLrAr~fd~~~a~~ml~~ 75 (93)
T d1auaa1 53 STLLRFLRARKFDVQLAKEMFEN 75 (93)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHH
Confidence 6799999 789999999999975
No 3
>d2cvla1 d.79.1.1 (A:1-124) Putative translation intiation inhibitor TTHA0137 {Thermus thermophilus [TaxId: 274]}
Probab=11.74 E-value=62 Score=24.33 Aligned_cols=43 Identities=9% Similarity=0.312 Sum_probs=31.6
Q ss_pred HhhcccCCcCeeeec---cchhhhhHHHHHHHHhhcCCcCCcCcccee
Q 012128 139 FQGFYSMKSDKLVLQ---NTVANDCFSDILSILASRGANHTIPTLCSV 183 (470)
Q Consensus 139 ~~Gq~S~~s~~L~Ln---~t~A~~C~SDi~~iL~s~GAn~~l~~iCSv 183 (470)
+-||-+.+.+...+. .+.++.||..|.++|.+.|++ +..+..+
T Consensus 28 vSGq~~~d~~~~~~~~~~~~Q~~~~l~~i~~~L~~~G~~--~~dvvk~ 73 (124)
T d2cvla1 28 VSGQIPLAPDGSLVEGDIRVQTERVMENLKAVLEAAGSG--LSRVVQT 73 (124)
T ss_dssp EEEECSBCTTSCBCCSSHHHHHHHHHHHHHHHHHHTTCC--GGGEEEE
T ss_pred EEEecCCCCCcccccCCHhHHHHHHHHHHHHHHHHhcCC--ccccEEE
Confidence 456777666655554 567899999999999999995 4555554
No 4
>d1jfla1 c.78.2.1 (A:1-115) Aspartate racemase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=11.74 E-value=36 Score=25.93 Aligned_cols=37 Identities=14% Similarity=0.275 Sum_probs=27.3
Q ss_pred cchhhhhhHHHHHHhHHhhhhhhhHHHHHHHHhhhhhhcC
Q 012128 320 PSCCSSLNAYIAGVQKQMLITNKQAIICAAVFGSMLRKEG 359 (470)
Q Consensus 320 ~sCC~al~sYvs~lQkQ~lITNlQAl~CAt~lGs~Lqk~~ 359 (470)
.-||..+|.|...+|++. |+-=|+=+...+.++|+.|
T Consensus 79 ~i~cNT~H~~~d~i~~~~---~iP~l~i~~~t~~~i~~~G 115 (115)
T d1jfla1 79 IMPCNTAHAFVEDIRKAI---KIPIISMIEETAKKVKELG 115 (115)
T ss_dssp ECSCTGGGGGHHHHHHHC---SSCBCCHHHHHHHHHHHTT
T ss_pred EEcCcHHHHHHHHHHHHC---CCCEecHHHHHHHHHHhcC
Confidence 468999999999999986 4445555555667777665
No 5
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.56 E-value=1.3e+02 Score=21.00 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=25.4
Q ss_pred hhHHHHh-hcCCCHHHHHHHHHhhccCccCcccccCCCC
Q 012128 267 GVAYSYL-SSKLSAEAANSAFRILSACKVNKVCPLDFKQ 304 (470)
Q Consensus 267 ~VVl~wL-a~KL~~~~An~~~R~LS~CkVNkvCPL~F~~ 304 (470)
...+||| |+|.+.+.|.++++.--. .-+.+|-.|.+
T Consensus 26 ~~LlrFLRarkf~~~ka~~~l~~y~~--~R~~~peif~~ 62 (66)
T d1r5la1 26 SFLLRFLRARDFDLDLAWRLLKNYYK--WRAECPEISAD 62 (66)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHH--HHHHCHHHHSC
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH--HHHHCHHHccC
Confidence 6889999 678999999999987533 33344444443
No 6
>d1he1a_ a.24.11.1 (A:) ExoS toxin {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.81 E-value=38 Score=28.31 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=14.6
Q ss_pred HhhhhhhhHHHHHHHHhhhhhhc
Q 012128 336 QMLITNKQAIICAAVFGSMLRKE 358 (470)
Q Consensus 336 Q~lITNlQAl~CAt~lGs~Lqk~ 358 (470)
-+++||||.|.| |+++|.+
T Consensus 52 Rsl~T~Lqgi~~----g~e~~q~ 70 (135)
T d1he1a_ 52 RSLSTALAGIRA----GSQVEES 70 (135)
T ss_dssp HHHHHHHHHHHH----HCSCHHH
T ss_pred HHHHHHhhhhhc----chHHHHH
Confidence 378999999997 6666553
No 7
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.38 E-value=64 Score=24.93 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=19.6
Q ss_pred hhhhHHHHHHHHhhcCCcCCcCcc
Q 012128 157 ANDCFSDILSILASRGANHTIPTL 180 (470)
Q Consensus 157 A~~C~SDi~~iL~s~GAn~~l~~i 180 (470)
+.+.-.++.++|.+.||+-+...+
T Consensus 261 ~~~~~~eiv~~Ll~~GAd~n~~d~ 284 (285)
T d1wdya_ 261 VELKLKKIAELLCKRGASTDCGDL 284 (285)
T ss_dssp HHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred HHcCCHHHHHHHHHCCCCCCcccC
Confidence 455678999999999999887754
No 8
>d1avqa_ c.52.1.13 (A:) lambda exonuclease {Bacteriophage lambda [TaxId: 10710]}
Probab=8.44 E-value=61 Score=27.09 Aligned_cols=18 Identities=50% Similarity=0.648 Sum_probs=15.8
Q ss_pred hHHHHHHhHHhhhhhhhH
Q 012128 327 NAYIAGVQKQMLITNKQA 344 (470)
Q Consensus 327 ~sYvs~lQkQ~lITNlQA 344 (470)
..|...+|-||+||+++.
T Consensus 154 ~~Y~~QvQ~qM~vtg~~~ 171 (228)
T d1avqa_ 154 SAYMAQVQYSMWVTRKNA 171 (228)
T ss_dssp HHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHhcCCCE
Confidence 359999999999999874
No 9
>d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.41 E-value=92 Score=24.40 Aligned_cols=32 Identities=16% Similarity=0.105 Sum_probs=26.9
Q ss_pred HHHHHHHHhhhhhhcCcccccccccccccccc
Q 012128 344 AIICAAVFGSMLRKEGVMTNIYELCDVDLKDF 375 (470)
Q Consensus 344 Al~CAt~lGs~Lqk~~V~~niY~LC~I~LKDF 375 (470)
|-..|..|...|++.|+...++++-+++..++
T Consensus 12 ae~~A~~l~~~l~~~g~~~~~~~~~~~~~~~l 43 (146)
T d1ykga1 12 ARRVAEALRDDLLAAKLNVKLVNAGDYKFKQI 43 (146)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEEGGGCCGGGG
T ss_pred HHHHHHHHHHHHHHCCCCceEeeccccchhhc
Confidence 44568889999999999999999988887765
No 10
>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=8.18 E-value=1.2e+02 Score=23.72 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=30.5
Q ss_pred cCCcchhhHHHHhhcCCCHHHHHHHHHhhccCccCcccccCCCCchHHHHHh
Q 012128 261 ALNDCKGVAYSYLSSKLSAEAANSAFRILSACKVNKVCPLDFKQPSEVIEAC 312 (470)
Q Consensus 261 ~v~DCK~VVl~wLa~KL~~~~An~~~R~LS~CkVNkvCPL~F~~~s~V~k~C 312 (470)
-+.|.+||..||+- +++.+ +.++.-++|-.|.-+.++.+.-
T Consensus 9 ~VGD~~nv~~Sli~----------~l~~~-g~~v~~~~P~~~~~~~~~~~~~ 49 (163)
T d1pvva2 9 YVGDGNNVAHSLMI----------AGTKL-GADVVVATPEGYEPDEKVIKWA 49 (163)
T ss_dssp EESCCCHHHHHHHH----------HHHHT-TCEEEEECCTTCCCCHHHHHHH
T ss_pred EECCCcHHHHHHHH----------HHHHc-CCeEEEecccccCCChHHHHHH
Confidence 45667899999973 34444 6899999999998887776543
Done!