BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012130
(470 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 224 bits (572), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 114/280 (40%), Positives = 171/280 (61%), Gaps = 5/280 (1%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTG+G ++P+G + F+ L G SG+ I FD ++ P +IAAE+ ++
Sbjct: 2 RRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEV-DVDPGAYL 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
K +R+D+F+ Y L A + AL D G+ + +LD + G L+G+G+GGM+ +
Sbjct: 61 DRKELRRLDRFVQYALIAAQLALEDAGLKPE---DLDPERVGTLVGTGIGGMETWEAQSR 117
Query: 285 A-LRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
L +++PF +P NM SA +AM G+ GP+ ++ TACAT + +A I
Sbjct: 118 VFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQL 177
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXX 403
GEA+++L GG++AA+ P+ +G F RALS RN +P KASRP+ ++RDGFVM
Sbjct: 178 GEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVLV 237
Query: 404 XXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
HAKKRGA+IYAE G ++DA+H+TEPHP+GK A
Sbjct: 238 LEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGA 277
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
From Synechocystis Sp
Length = 416
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/284 (40%), Positives = 167/284 (58%), Gaps = 4/284 (1%)
Query: 161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFST 220
++++KRVVVTG+G ++P+G+ ++ L+EG +GI I FD + + E+K F
Sbjct: 3 NLEKKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDA 62
Query: 221 DGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 280
++ K +KRMD+F + + A ++A+ D + V+NEL+ + GVLIG+G+GG+KV
Sbjct: 63 TQFLDRKEAKRMDRFCHFAVCASQQAINDAKL---VINELNADEIGVLIGTGIGGLKVLE 119
Query: 281 DAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAAN 339
D L + +PF +P NM S + A++LG GPN TACA + I +A
Sbjct: 120 DQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFR 179
Query: 340 HIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXX 399
+ G A M+CGG++AA+ P+ GF + RALS RN+DP ASRP+D +RDGFVM
Sbjct: 180 LVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGS 239
Query: 400 XXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
A RGAKIY E G + T DAYH+T P PDG+ A
Sbjct: 240 GILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGA 283
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 206 bits (523), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/287 (41%), Positives = 165/287 (57%), Gaps = 9/287 (3%)
Query: 161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFST 220
HMK RVVVTG G+ SP+G+ P+ F+N+L G GI I FD + F AAEI+ F
Sbjct: 20 HMKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPF 79
Query: 221 DGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 280
D + K + R D + LY L A ++A+ + + +N + + GV++ SG+GG+K
Sbjct: 80 DKYFVKKDTNRFDNYSLYALYAAQEAVNHANLDVEALN---RDRFGVIVASGIGGIKEIE 136
Query: 281 DAIEALRISY---KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNA 337
D + LR+ K++ P +P A NM S +AM G G SI+TAC++SN I +A
Sbjct: 137 DQV--LRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDA 194
Query: 338 ANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXX 397
I G +VML GG++A++ P + GF A ALS DPT+AS P+D +R+GFVM
Sbjct: 195 FRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST-TEDPTRASIPFDKDRNGFVMGE 253
Query: 398 XXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM 444
HA+KRGA I AE G T DAYHMT PHP+G+ A+
Sbjct: 254 GSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAI 300
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 206 bits (523), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/287 (41%), Positives = 165/287 (57%), Gaps = 9/287 (3%)
Query: 161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFST 220
HMK RVVVTG G+ SP+G+ P+ F+N+L G GI I FD + F AAEI+ F
Sbjct: 19 HMKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPF 78
Query: 221 DGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 280
D + K + R D + LY L A ++A+ + + +N + + GV++ SG+GG+K
Sbjct: 79 DKYFVKKDTNRFDNYSLYALYAAQEAVNHANLDVEALN---RDRFGVIVASGIGGIKEIE 135
Query: 281 DAIEALRISY---KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNA 337
D + LR+ K++ P +P A NM S +AM G G SI+TAC++SN I +A
Sbjct: 136 DQV--LRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDA 193
Query: 338 ANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXX 397
I G +VML GG++A++ P + GF A ALS DPT+AS P+D +R+GFVM
Sbjct: 194 FRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST-TEDPTRASIPFDKDRNGFVMGE 252
Query: 398 XXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM 444
HA+KRGA I AE G T DAYHMT PHP+G+ A+
Sbjct: 253 GSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAI 299
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/287 (41%), Positives = 165/287 (57%), Gaps = 9/287 (3%)
Query: 161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFST 220
HMK RVVVTG G+ SP+G+ P F+N+L G GI I FD + F AAEI+ F
Sbjct: 19 HMKLNRVVVTGYGVTSPIGNTPAEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPF 78
Query: 221 DGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 280
D + K + R D + LY L A ++A+ + DV L++ + GV++ SG+GG+K
Sbjct: 79 DKYFVKKDTNRFDNYSLYALYAAQEAVNHANL--DVA-ALNRDRFGVIVASGIGGIKEIE 135
Query: 281 DAIEALRISY---KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNA 337
D + LR+ K++ P +P A NM S +AM G G SI+TAC++SN I +A
Sbjct: 136 DQV--LRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDA 193
Query: 338 ANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXX 397
I G +VML GG++A++ P + GF A ALS DPT+AS P+D +R+GFVM
Sbjct: 194 FRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST-TEDPTRASIPFDKDRNGFVMGE 252
Query: 398 XXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM 444
HA+KRGA I AE G T DAYHMT PHP+G+ A+
Sbjct: 253 GSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAI 299
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 199 bits (505), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 109/275 (39%), Positives = 161/275 (58%), Gaps = 2/275 (0%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
+ ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 15 VSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 74
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K ++MD F+ Y + AG +A+ D G+ ++ E + G + +
Sbjct: 75 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGL--EITEENATRIGAAIGSGIGGLGLIEEN 132
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+ +K++PF VP NM + L + G GP+ SI+TAC + I +AA I
Sbjct: 133 HTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARII 192
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXX 401
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+
Sbjct: 193 AYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGM 252
Query: 402 XXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEP 436
HAKKRGAKIYAE G +SDAYHMT P
Sbjct: 253 LVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 287
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 199 bits (505), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 109/275 (39%), Positives = 161/275 (58%), Gaps = 2/275 (0%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
+ ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 15 VSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 74
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K ++MD F+ Y + AG +A+ D G+ ++ E + G + +
Sbjct: 75 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGL--EITEENATRIGAAIGSGIGGLGLIEEN 132
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+ +K++PF VP NM + L + G GP+ SI+TAC + I +AA I
Sbjct: 133 HTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARII 192
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXX 401
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+
Sbjct: 193 AYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGM 252
Query: 402 XXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEP 436
HAKKRGAKIYAE G +SDAYHMT P
Sbjct: 253 LVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 287
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 198 bits (504), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 109/273 (39%), Positives = 160/273 (58%), Gaps = 2/273 (0%)
Query: 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGW 223
++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 2 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 61
Query: 224 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAI 283
++ K ++MD F+ Y + AG +A+ D G+ ++ E + G + +
Sbjct: 62 ISRKEQRKMDAFIQYGIVAGVQAMQDSGL--EITEENATRIGAAIGSGIGGLGLIEENHT 119
Query: 284 EALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
+ +K++PF VP NM + L + G GP+ SI+TAC + I +AA I
Sbjct: 120 SLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAY 179
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXX 403
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+
Sbjct: 180 GDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLV 239
Query: 404 XXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEP 436
HAKKRGAKIYAE G +SDAYHMT P
Sbjct: 240 LEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 272
>pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
pdb|2GQD|B Chain B, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
Length = 437
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/280 (38%), Positives = 162/280 (57%), Gaps = 5/280 (1%)
Query: 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDG 222
+ KRVV+TGMG +SP+G++ + N L+GV+GI +I D + +A E+K+F+ +
Sbjct: 26 QNKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNIED 85
Query: 223 WVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDA 282
+ K ++RMD+F Y + A ++A+ D + +NE + GV IGSG+GGM+ F A
Sbjct: 86 HIDKKEARRMDRFTQYAIVAAREAVKDAQLD---INENTADRIGVWIGSGIGGMETFEIA 142
Query: 283 IEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+ L ++++PF VP +M + +++DLG GPN + TACAT I A +
Sbjct: 143 HKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIV 202
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXX 401
RG+A+ M+ GG++A + + + GF A RALS N+D A RP+ RDGFVM
Sbjct: 203 QRGDADAMITGGTEAPITHMAIAGFSASRALST-NDDIETACRPFQEGRDGFVMGEGAGI 261
Query: 402 XXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGK 441
A+ RGA IYAE G T DAYH+T P P+G+
Sbjct: 262 LVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGE 301
>pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin
pdb|3HO2|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
pdb|3HO9|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
A1
pdb|3I8P|A Chain A, Crystal Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin A1
Length = 427
Score = 196 bits (497), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 108/275 (39%), Positives = 160/275 (58%), Gaps = 2/275 (0%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
+ ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 15 VSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 74
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K ++MD F+ Y + AG +A+ D G+ ++ E + G + +
Sbjct: 75 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGL--EITEENATRIGAAIGSGIGGLGLIEEN 132
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+ +K++PF VP NM + L + G GP+ SI+TA + I +AA I
Sbjct: 133 HTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAATSGVHNIGHAARII 192
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXX 401
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+
Sbjct: 193 AYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGM 252
Query: 402 XXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEP 436
HAKKRGAKIYAE G +SDAYHMT P
Sbjct: 253 LVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 287
>pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant
pdb|2GFX|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Platensimycin
pdb|3G0Y|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydroplatensimycin
pdb|3G11|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydrophenyl Platensimycin
Length = 427
Score = 194 bits (494), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 108/275 (39%), Positives = 160/275 (58%), Gaps = 2/275 (0%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
+ ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 15 VSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 74
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K ++MD F+ Y + AG +A+ D G+ ++ E + G + +
Sbjct: 75 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGL--EITEENATRIGAAIGSGIGGLGLIEEN 132
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+ +K++PF VP NM + L + G GP+ SI+TA + I +AA I
Sbjct: 133 HTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAQTSGVHNIGHAARII 192
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXX 401
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+
Sbjct: 193 AYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGM 252
Query: 402 XXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEP 436
HAKKRGAKIYAE G +SDAYHMT P
Sbjct: 253 LVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 287
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/281 (37%), Positives = 167/281 (59%), Gaps = 5/281 (1%)
Query: 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGW 223
++RVVVTG+G V+P+G++ + + N +GV+G+++ + FP KIAAE+K F + +
Sbjct: 3 KRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKXTRLNPDDFPVKIAAELKDFDVEKY 62
Query: 224 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAI 283
+ K +++ D+F Y + + + A+ D G+ V+++ + ++ GV IGSG+GG + F
Sbjct: 63 LEKKEARKXDRFTHYAIASAEXAVQDSGL---VIDDSNANRVGVWIGSGIGGXETFETQY 119
Query: 284 EA-LRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHII 342
E L +++++PF VP + GS +++ G G N + TACAT+ I +A I
Sbjct: 120 EIFLNRGHRRVSPFFVPXXIPDXGSGQVSIRFGAKGINSTTVTACATATNSIGDAFKVIE 179
Query: 343 RGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXX 402
RG+A+ + GG++A + L GF A +ALS N DP A RP+D +RDGF++
Sbjct: 180 RGDADAXITGGAEAPITKXSLAGFTANKALSL-NPDPETACRPFDKDRDGFIIGEGAGIV 238
Query: 403 XXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
HAK RGAKIYAE G T DAYH+T P P+G+ A
Sbjct: 239 ILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGA 279
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 167/289 (57%), Gaps = 11/289 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK-------S 217
+RVV+TG+GLVSPL + + LL G SG + F+ +IA I +
Sbjct: 10 RRVVITGLGLVSPLASGVEETWKRLLAGESGARRVTEFEVDDLACQIACRIPVGDGTNGT 69
Query: 218 FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK 277
F+ D + PK +++D F++Y + A +AL D G + N+ D+ + GVLIGSG+GG++
Sbjct: 70 FNPDLHMDPKEQRKVDPFIVYAVGAADQALDDAGWHPE--NDEDQVRTGVLIGSGIGGIE 127
Query: 278 VFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILN 336
+A LR ++++PF +P N+ S +++ GPN+S+ TACAT I +
Sbjct: 128 GIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSIKHKLRGPNHSVVTACATGTHAIGD 187
Query: 337 AANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALS-QRNNDPTKASRPWDINRDGFVM 395
AA I G+A+VM+ GG+++ V I L GF AC+ALS +RN+DPT ASRP+D +RDGFVM
Sbjct: 188 AARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAASRPYDEDRDGFVM 247
Query: 396 XXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM 444
HA RGAKIYAE G + DA+H+T P G+ A
Sbjct: 248 GEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQ 296
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
pdb|3E60|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
Length = 424
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 161/291 (55%), Gaps = 15/291 (5%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK-------S 217
+RVV+TG+GLVSPL + + + LLEG SG+ I FD + +IAA I +
Sbjct: 6 RRVVITGLGLVSPLAGDVEYSWKRLLEGKSGVRRITEFDVSDLSCQIAARIPVGDGTNGT 65
Query: 218 FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK 277
++ D + K +++D F++Y + A +ALA + + D+ + + G G
Sbjct: 66 YNADLHMESKEQRKVDAFIVYAIAAADQALA----DAEWFPKSDEDQICTGVLIGSGIGG 121
Query: 278 VFYDAIEALRISYK---KMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCI 334
+ + K +++PF +P N+ S +++ G GPN+S+ TAC+T I
Sbjct: 122 IEGIVEAGYTLRDKGPRRISPFFIPGRLINLASGYVSIKYGLRGPNHSVVTACSTGAHAI 181
Query: 335 LNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQ-RNNDPTKASRPWDINRDGF 393
+AA I G+A+VML GG+++ + I L GF ACRALS RN+DP +ASRP+D++RDGF
Sbjct: 182 GDAARLIALGDADVMLAGGTESPINRISLAGFSACRALSTCRNDDPERASRPYDVDRDGF 241
Query: 394 VMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM 444
VM HAKKRGA+IYAE G + DAYH+T P G+ A
Sbjct: 242 VMGEGAAIVVLEELEHAKKRGARIYAEIIGYGLSGDAYHITAPSESGEGAQ 292
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 153/288 (53%), Gaps = 10/288 (3%)
Query: 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDG- 222
+RVV+TG+GLV+PLG + ++ L+ G SGI + + S P +AA + S +G
Sbjct: 20 HRRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQ 79
Query: 223 -----WVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK 277
+V+ K M + + A + A+ D G +E D+ GV IG G+ ++
Sbjct: 80 FNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQ--SEADQVATGVAIGMGMIPLE 137
Query: 278 VFYD-AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILN 336
V + A+ Y K++PF VP NM + +++ GPN+++STAC T + +
Sbjct: 138 VVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTACTTGAHAVGD 197
Query: 337 AANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMX 396
+ I G+A+VM+ GG+D+ + P+ L GF RALS N+DP A RP+ RDGFVM
Sbjct: 198 SFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST-NSDPKLACRPFHPKRDGFVMG 256
Query: 397 XXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM 444
HA +R A+IYAE G + DA H+T P P+G+ A+
Sbjct: 257 EGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGAL 304
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 152/288 (52%), Gaps = 10/288 (3%)
Query: 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDG- 222
+RVV+TG+GLV+PLG + ++ L+ G SGI + + S P +AA + S +G
Sbjct: 26 HRRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQ 85
Query: 223 -----WVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK 277
+V+ K M + + A + A+ D G +E D+ GV IG G+ ++
Sbjct: 86 FNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQ--SEADQVATGVAIGMGMIPLE 143
Query: 278 VFYD-AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILN 336
V + A+ Y K++PF VP NM + +++ GPN+++STA T + +
Sbjct: 144 VVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTAXTTGAHAVGD 203
Query: 337 AANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMX 396
+ I G+A+VM+ GG+D+ + P+ L GF RALS N+DP A RP+ RDGFVM
Sbjct: 204 SFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST-NSDPKLACRPFHPKRDGFVMG 262
Query: 397 XXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM 444
HA +R A+IYAE G + DA H+T P P+G+ A+
Sbjct: 263 EGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGAL 310
>pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis
Length = 451
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 157/300 (52%), Gaps = 18/300 (6%)
Query: 158 KKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKS 217
+ P RVVVTG+G+VSPLG ++ + L+ G SG+ + K+ ++
Sbjct: 17 QGPGSMTLRVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSAKVGGTVQD 76
Query: 218 FSTD--GWVAPKLS------KRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLI 269
+ D G P+ S ++MD+F+ + A +ALA+ G + E + + ++
Sbjct: 77 VAEDPEGGFDPERSVPHKELRKMDRFIQMAMVAADEALAEAGWAPEA--EQQRERTATVV 134
Query: 270 GSGLGGMKVFYDAIEALRIS----YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSIST 325
SG+GG F EA+RI ++++PF +PF +N+ + +++ + GP T
Sbjct: 135 ASGIGG---FPGLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVT 191
Query: 326 ACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASR 384
ACA S I +A I GEA+V+L GG++AA + LGGF A RALS + +P +ASR
Sbjct: 192 ACAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASR 251
Query: 385 PWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM 444
P+D +RDGFVM HA RGA+ AE G T+DAYHMT DG AM
Sbjct: 252 PFDRDRDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAM 311
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 160/304 (52%), Gaps = 31/304 (10%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGI----------------SEIETFDCTSFP 208
+RVVVTG+G+V+PLG + + L++G GI +++ TFD S
Sbjct: 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLS-- 58
Query: 209 TKIAAEIKSFSTDGWVAPKL---SKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKC 265
+K+AA + S G L SK + F+ Y + A +AL D E +++
Sbjct: 59 SKVAAFVPYGSNPGEFDEALWLNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGV 118
Query: 266 GVLIGSGLGGMKVFYDAIEALRI----SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNY 321
+ G D +EA ++ ++++PF +P NM S ++M G+ GPN+
Sbjct: 119 SIGGGI-----GSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNH 173
Query: 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPT 380
+ TACAT I +A I G+A+VM+ GG+++++ + + GF RALS + N+ P
Sbjct: 174 AAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQ 233
Query: 381 KASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
+ASRP+D +RDGFV+ HAK+RGAKIYAE G + DA+H+T+P DG
Sbjct: 234 EASRPFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDG 293
Query: 441 KSAM 444
K A+
Sbjct: 294 KGAV 297
>pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
pdb|4F32|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
Length = 451
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 156/300 (52%), Gaps = 18/300 (6%)
Query: 158 KKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKS 217
+ P RVVVTG+G+VSPLG ++ + L+ G SG+ + K+ ++
Sbjct: 17 QGPGSMTLRVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSAKVGGTVQD 76
Query: 218 FSTD--GWVAPKLS------KRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLI 269
+ D G P+ S ++MD+F+ + A +ALA+ G + E + + ++
Sbjct: 77 VAEDPEGGFDPERSVPHKELRKMDRFIQMAMVAADEALAEAGWAPEA--EQQRERTATVV 134
Query: 270 GSGLGGMKVFYDAIEALRIS----YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSIST 325
SG+GG F EA+RI ++++PF +PF +N+ + +++ + GP T
Sbjct: 135 ASGIGG---FPGLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVT 191
Query: 326 ACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASR 384
A A S I +A I GEA+V+L GG++AA + LGGF A RALS + +P +ASR
Sbjct: 192 AXAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASR 251
Query: 385 PWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM 444
P+D +RDGFVM HA RGA+ AE G T+DAYHMT DG AM
Sbjct: 252 PFDRDRDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAM 311
>pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis Bound To The Fragment 7-Hydroxycoumarin
Length = 411
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 139/278 (50%), Gaps = 7/278 (2%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTGMG+VS +G + +L E SGIS E + F ++ + V
Sbjct: 6 RRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFRCQVHGA-PDIDIESLV 64
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
+ + + + A +A+AD G+TE+ E+ + G+++GSG + D+ +
Sbjct: 65 DRRAMRFHGRGTAWNHIAMDQAIADAGLTEE---EVSNERTGIIMGSGGPSTRTIVDSAD 121
Query: 285 ALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
R K++ PF VP A ++ SA LA G NYSIS+ACATSN CI NA I
Sbjct: 122 ITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACATSNHCIGNAYEMIQY 181
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXXXX 402
G+ + M GG + + + F A A+S + ND P+ ASR +D NRDGFV+
Sbjct: 182 GKQDRMFAGGCEDLDWTLSV-LFDAMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGAGVL 240
Query: 403 XXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
A RGAKIY E G TSD Y M P +G
Sbjct: 241 VLEDLETALARGAKIYGEIVGYGATSDGYDMVAPSGEG 278
>pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis
pdb|3MQD|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis With Fol 0758, (1-Methyl-1h-Indazol-3-Yl)
Methanol
pdb|3U0E|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis In Complex With Fragment 9320
Length = 428
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 139/278 (50%), Gaps = 7/278 (2%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTGMG+VS +G + +L E SGIS E + F ++ + V
Sbjct: 23 RRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFRCQVHGA-PDIDIESLV 81
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
+ + + + A +A+AD G+TE+ E+ + G+++GSG + D+ +
Sbjct: 82 DRRAMRFHGRGTAWNHIAMDQAIADAGLTEE---EVSNERTGIIMGSGGPSTRTIVDSAD 138
Query: 285 ALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
R K++ PF VP A ++ SA LA G NYSIS+ACATSN CI NA I
Sbjct: 139 ITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACATSNHCIGNAYEMIQY 198
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXXXX 402
G+ + M GG + + + F A A+S + ND P+ ASR +D NRDGFV+
Sbjct: 199 GKQDRMFAGGCEDLDWTLSV-LFDAMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGAGVL 257
Query: 403 XXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
A RGAKIY E G TSD Y M P +G
Sbjct: 258 VLEDLETALARGAKIYGEIVGYGATSDGYDMVAPSGEG 295
>pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|B Chain B, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|C Chain C, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|D Chain D, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYX|A Chain A, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|B Chain B, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|C Chain C, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|D Chain D, Kas I Lys328ala Mutant In Complex With Fatty Acid
Length = 418
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 141/280 (50%), Gaps = 9/280 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KRVV+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 14 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 131 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQI 189
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 400
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 190 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 248
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
HA RGA IYAE G TSD M P +G
Sbjct: 249 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEG 288
>pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|B Chain B, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|C Chain C, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|D Chain D, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|2CDH|A Chain A, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|B Chain B, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|C Chain C, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|D Chain D, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|E Chain E, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|F Chain F, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 406
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 141/280 (50%), Gaps = 9/280 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KRVV+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 2 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 119 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQI 177
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 400
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 178 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 236
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
HA RGA IYAE G TSD M P +G
Sbjct: 237 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEG 276
>pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation
pdb|2BYY|B Chain B, E. Coli Kas I H298e Mutation
pdb|2BYY|C Chain C, E. Coli Kas I H298e Mutation
pdb|2BYY|D Chain D, E. Coli Kas I H298e Mutation
pdb|2BZ3|A Chain A, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|B Chain B, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|C Chain C, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|D Chain D, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
Length = 418
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 140/280 (50%), Gaps = 9/280 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KR V+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 14 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 131 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQI 189
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 400
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 190 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 248
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
HA RGA IYAE G TSD M P +G
Sbjct: 249 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEG 288
>pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|B Chain B, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|C Chain C, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|D Chain D, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BZ4|A Chain A, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|B Chain B, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|C Chain C, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|D Chain D, Structure Of E. Coli Kas I H298q Mutant
Length = 418
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 140/280 (50%), Gaps = 9/280 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KR V+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 14 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 131 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQI 189
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 400
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 190 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 248
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
HA RGA IYAE G TSD M P +G
Sbjct: 249 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEG 288
>pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|B Chain B, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|C Chain C, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|D Chain D, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
Length = 406
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 140/280 (50%), Gaps = 9/280 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KR V+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 119 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQI 177
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 400
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 178 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 236
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
HA RGA IYAE G TSD M P +G
Sbjct: 237 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEG 276
>pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ8|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1G5X|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|2BUH|A Chain A, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|B Chain B, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|C Chain C, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|D Chain D, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUI|A Chain A, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|B Chain B, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|C Chain C, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|D Chain D, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2AQ7|A Chain A, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|B Chain B, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|C Chain C, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|D Chain D, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQB|A Chain A, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|B Chain B, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|C Chain C, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|D Chain D, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2VB7|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB8|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB9|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VBA|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
Length = 406
Score = 131 bits (330), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 140/280 (50%), Gaps = 9/280 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KR V+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 119 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQI 177
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 400
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 178 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 236
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
HA RGA IYAE G TSD M P +G
Sbjct: 237 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEG 276
>pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|C Chain C, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|E Chain E, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|G Chain G, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 424
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 140/293 (47%), Gaps = 11/293 (3%)
Query: 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGW 223
++RVV+TG+G+ +P G+ F+ L G + I FD + + +++AAE
Sbjct: 2 KRRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVAEG 61
Query: 224 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK------ 277
P+ RMD+ + + ++A A G+ D LD ++ GV +GS +
Sbjct: 62 FGPRELDRMDRASQFAVACAREAFAASGLDPDT---LDPARVGVSLGSAVAAATSLEREY 118
Query: 278 -VFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILN 336
+ D+ + ++ + ++ A +A +G GP +ST C + + N
Sbjct: 119 LLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSVGN 178
Query: 337 AANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMX 396
A I G A+VM G +D + PI + F A RA + RN+DP ASRP+D RDGFV+
Sbjct: 179 AVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARNDDPEHASRPFDGTRDGFVLA 238
Query: 397 XXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKS-AMSLRL 448
A RGA+I+AE G + +AYHMT DG+ A ++R+
Sbjct: 239 EGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRV 291
>pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
pdb|2WGE|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
With Bound Tlm
Length = 416
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 134/269 (49%), Gaps = 15/269 (5%)
Query: 182 PDV--FYNNLLEGVSGISEIETFDCTSF--PTKIAAEIKSFSTDGWVAPKLSKRMD-KFM 236
PD+ + LL G SGI +E T + KI +K D + R+D + M
Sbjct: 27 PDIESTWKGLLAGESGIHALEDEFVTKWDLAVKIGGHLKD-PVDSHMG-----RLDMRRM 80
Query: 237 LYLLTAGKKALADGGITEDVMN-ELDKSKCGVLIGSGLGGMKVFYDAIEALRIS-YKKMN 294
Y+ GK L G + E + E+D + V++G+GLGG + ++ + + +K++
Sbjct: 81 SYVQRMGK--LLGGQLWESAGSPEVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVS 138
Query: 295 PFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGS 354
P V N +A++ + LG + +AC++ + I +A I+ G+A+V +CGG
Sbjct: 139 PLAVQMIMPNGAAAVIGLQLGARAGVMTPVSACSSGSEAIAHAWRQIVMGDADVAVCGGV 198
Query: 355 DAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRG 414
+ + + + F RA+S RN++P +ASRP+D +RDGFV HAK RG
Sbjct: 199 EGPIEALPIAAFSMMRAMSTRNDEPERASRPFDKDRDGFVFGEAGALMLIETEEHAKARG 258
Query: 415 AKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
AK A G TSDA+HM P DG A
Sbjct: 259 AKPLARLLGAGITSDAFHMVAPAADGVRA 287
>pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
Length = 416
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 133/269 (49%), Gaps = 15/269 (5%)
Query: 182 PDV--FYNNLLEGVSGISEIETFDCTSF--PTKIAAEIKSFSTDGWVAPKLSKRMD-KFM 236
PD+ + LL G SGI +E T + KI +K D + R+D + M
Sbjct: 27 PDIESTWKGLLAGESGIHALEDEFVTKWDLAVKIGGHLKD-PVDSHMG-----RLDMRRM 80
Query: 237 LYLLTAGKKALADGGITEDVMN-ELDKSKCGVLIGSGLGGMKVFYDAIEALRIS-YKKMN 294
Y+ GK L G + E + E+D + V++G+GLGG + ++ + + +K++
Sbjct: 81 SYVQRMGK--LLGGQLWESAGSPEVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVS 138
Query: 295 PFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGS 354
P V N +A++ + LG + +A ++ + I +A I+ G+A+V +CGG
Sbjct: 139 PLAVQMIMPNGAAAVIGLQLGARAGVMTPVSAQSSGSEAIAHAWRQIVMGDADVAVCGGV 198
Query: 355 DAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRG 414
+ + + + F RA+S RN++P +ASRP+D +RDGFV HAK RG
Sbjct: 199 EGPIEALPIAAFSMMRAMSTRNDEPERASRPFDKDRDGFVFGEAGALMLIETEEHAKARG 258
Query: 415 AKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
AK A G TSDA+HM P DG A
Sbjct: 259 AKPLARLLGAGITSDAFHMVAPAADGVRA 287
>pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|B Chain B, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|C Chain C, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|D Chain D, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
Length = 418
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 140/280 (50%), Gaps = 9/280 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KRVV+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 14 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+A ATS CI NA I
Sbjct: 131 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSASATSAHCIGNAVEQI 189
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 400
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 190 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 248
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
HA RGA IYAE G TSD M P +G
Sbjct: 249 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEG 288
>pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|B Chain B, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|C Chain C, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|D Chain D, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|2CF2|A Chain A, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|J Chain J, Architecture Of Mammalian Fatty Acid Synthase
Length = 406
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 140/280 (50%), Gaps = 9/280 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KRVV+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 2 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+A ATS CI NA I
Sbjct: 119 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSASATSAHCIGNAVEQI 177
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 400
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 178 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 236
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
HA RGA IYAE G TSD M P +G
Sbjct: 237 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEG 276
>pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
Length = 406
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/280 (33%), Positives = 139/280 (49%), Gaps = 9/280 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KR V+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+A ATS CI NA I
Sbjct: 119 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSAXATSAHCIGNAVEQI 177
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 400
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 178 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 236
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
HA RGA IYAE G TSD M P +G
Sbjct: 237 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEG 276
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 134/299 (44%), Gaps = 25/299 (8%)
Query: 154 VTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISE-----IETFDCTSFP 208
VT K P+ VVVTG+ + + L + + + LL+ SGI +E FD P
Sbjct: 22 VTGKAFPY-----VVVTGIAMTTALATDAETTWKLLLDRQSGIRTLDDPFVEEFD---LP 73
Query: 209 TKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVL 268
+I + D + +RM ++ + G E +D ++ V
Sbjct: 74 VRIGGHLLE-EFDHQLTRIELRRMGYLQRMSTVLSRRLWENAGSPE-----VDTNRLMVS 127
Query: 269 IGSGLGGMK--VF-YDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSIST 325
IG+GLG + VF YD + A K ++P V N +A + ++ + +
Sbjct: 128 IGTGLGSAEELVFSYDDMRAR--GMKAVSPLTVQKYMPNGAAAAVGLERHAKAGVMTPVS 185
Query: 326 ACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACR-ALSQRNNDPTKASR 384
ACA+ I A I+ GEA+ +CGG + + + + GF R +S N+DP A R
Sbjct: 186 ACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACR 245
Query: 385 PWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
P+D +RDGFV HAK RGA I A G S TSD +HM P P+G+ A
Sbjct: 246 PFDRDRDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERA 304
>pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
pdb|3OYT|B Chain B, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
Length = 410
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 132/283 (46%), Gaps = 14/283 (4%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KR V+TG+G+VS +G+ +L EG SGI+ + F + + ++K S
Sbjct: 5 KRAVITGLGIVSSIGNNQQEVLASLQEGRSGITFAQEFKDAGXRSHVWGDVKLQSE---- 60
Query: 225 APK--LSKRMDKFM----LYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKV 278
PK + +++ +F +Y A ++A+AD G+++ ++ G
Sbjct: 61 -PKDLIDRKVLRFXSDASIYAYLAXQEAIADSGLSDSQVSNFRSGLVVGSGGGSPRNQVA 119
Query: 279 FYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAA 338
DA R K + P+ V A + SA LA G NYSIS+ACATS CI +A
Sbjct: 120 GSDAXRTPR-GLKGVGPYXVTKAXASGVSACLATPFKIKGVNYSISSACATSAHCIGHAL 178
Query: 339 NHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXX 397
I G+ +++ GG + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 179 ELIQLGKQDIVFAGGGEELCWEXACE-FDAXGALSTKYNDTPAKASRTYDQDRDGFVIAG 237
Query: 398 XXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
HA RGA IYAE G TSD P +G
Sbjct: 238 GGGXVVVEELEHALARGAHIYAEIVGYGATSDGADXVAPSGEG 280
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 126/276 (45%), Gaps = 9/276 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDC-TSFPTKIAAEIKSFSTDGW 223
KRVV+TGMG V+ LG D L G + + + +D S T++AA + F+
Sbjct: 6 KRVVITGMGGVTALGSRWDEIEAALKAGRNAVRRMPDWDYFESLHTRLAAPLPGFAQPAD 65
Query: 224 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG---MKVFY 280
K ++ M + +Y + A + ALAD G D + + GV GS G ++ F
Sbjct: 66 WPRKKTRSMGRVSMYAVRASELALADAGFAGD--ESISDGRMGVAYGSSSGSVEPIRAFG 123
Query: 281 DAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+E+ ++ N + T + L DL G S+ACA+ + I A +
Sbjct: 124 TMLESGSMTDVTSNSYVQMMPHTTAVNVSLFWDL--KGRIVPTSSACASGSQAIGYAYEN 181
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXX 400
I G+ +ML GG++ P + F A S RN++P RP+D RDG V+
Sbjct: 182 IAMGKQTLMLAGGAEELSGP-AVAVFDTLYATSTRNDEPHLTPRPFDAKRDGLVVGEGAA 240
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEP 436
HAK RGA I+AE G SD HMT+P
Sbjct: 241 TLVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQP 276
>pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|D Chain D, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|F Chain F, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|H Chain H, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 415
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 110/271 (40%), Gaps = 11/271 (4%)
Query: 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDG 222
K V++TG+G+V+P G +++ +L+G G+ + FD + +P +A +I F
Sbjct: 7 DDKSVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPD 66
Query: 223 WVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDA 282
+ +L + D LTA AL D + + + D GV+ + GG +
Sbjct: 67 HIPGRLLPQTDPSTRLALTAADWALQDAKADPESLTDYD---MGVVTANACGGFDFTHRE 123
Query: 283 IEALRISYKKMNPFCVPFA---TTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAAN 339
L K FA N G +++ G GP+ ++ A L A
Sbjct: 124 FRKLWSEGPKSVSVYESFAWFYAVNTG--QISIRHGMRGPSSAL-VAEQAGGLDALGHAR 180
Query: 340 HIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXX 399
IR +++ GG D+A+ P G +A +S DP +A P+D G+V
Sbjct: 181 RTIRRGTPLVVSGGVDSALDPWGWVSQIASGRIST-ATDPDRAYLPFDERAAGYVPGEGG 239
Query: 400 XXXXXXXXXHAKKRGA-KIYAEFRGGSFTSD 429
A+ RG Y E G + T D
Sbjct: 240 AILVLEDSAAAEARGRHDAYGELAGCASTFD 270
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 54/250 (21%), Positives = 94/250 (37%), Gaps = 8/250 (3%)
Query: 197 SEIETFDCTSFPTKIAAEIKS-FSTDGW-VAPKLSKRMDKFMLYLLTAGKKALADGGIT- 253
+EI T + A+I + F W ++P ++ +D+ L+ + A A G T
Sbjct: 2607 TEIRVPRKTKLSRTVGAQIPTGFDPTVWGISPDMASSIDRVALWNIVATVDAFLSSGFTP 2666
Query: 254 EDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313
++M + S+ G+G+GGM + K N + + ++
Sbjct: 2667 TELMRWVHPSQVASTQGTGMGGMTSMQTMYHGNLLGRAKPNDILQEVLPNVVAAHVMQSY 2726
Query: 314 LGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIP--IGLGGFVA--- 368
+G G ACAT+ + + I G+A++++ GG D + IG G A
Sbjct: 2727 VGGYGAMVHPVGACATAAVSVEEGVDKIKLGKADLVIAGGFDDLTLEAIIGFGDMAATAD 2786
Query: 369 CRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTS 428
+ + +K SR D R GF+ A K G + A +
Sbjct: 2787 TEMMRAKGISDSKFSRANDRRRLGFLEAQGGGTILLARGDLALKMGLPVLAVVGYAQSFA 2846
Query: 429 DAYHMTEPHP 438
D H + P P
Sbjct: 2847 DGVHTSIPAP 2856
>pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|B Chain B, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|C Chain C, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|D Chain D, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|E Chain E, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|F Chain F, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVB|A Chain A, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|B Chain B, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|C Chain C, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|D Chain D, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|E Chain E, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|F Chain F, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 1878
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 94/238 (39%), Gaps = 29/238 (12%)
Query: 222 GW------VAPKLSKRMDKFMLYLLTAGKKALADGGITE--DVMNELDKSKCGVLIGSGL 273
GW V + +++D LY+L + +AL GIT+ + + S+ G IGSG+
Sbjct: 1167 GWDARRYGVPEDIIQQVDPVTLYVLVSVAEALLSSGITDPYEFYKYVHLSEVGNCIGSGV 1226
Query: 274 GGMKVFYDAIEALRISYK--------KMNPFCVPFATTNMGSAMLAMDLGWMGPNYSIST 325
GG ALR YK + + F T M + + + L GP +
Sbjct: 1227 GGTS-------ALRGMYKDRYLDKPVQKDILQESFVNT-MAAWVNMLLLSSTGPIKTPVG 1278
Query: 326 ACATSNFCILNAANHIIRGEANVMLCGGSD-----AAVIPIGLGGFVACRALSQRNNDPT 380
ACAT+ + + I++G+A V L GG D + +G + R +P
Sbjct: 1279 ACATAVESLDVGYDTIMQGKARVCLVGGFDDFQEEGSYEFANMGATSNAKEEFARGREPG 1338
Query: 381 KASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHP 438
+ SRP R+GF+ A + G IY S +D + P P
Sbjct: 1339 EMSRPTSTTRNGFMESQGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPAP 1396
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 17/203 (8%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIE---TFDCTSFPTKIAA--EIKSFS 219
+ VV+ GM P F++NL+ GV +++ + P + ++ F
Sbjct: 4 EEVVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDDRRWKAGLYGLPRRSGKLKDLSRFD 63
Query: 220 TDGW-VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIG-SGLGGMK 277
+ V PK + MD + LL +A+ DGGI D L + GV +G SG
Sbjct: 64 ASFFGVHPKQAHTMDPQLRLLLEVTYEAIVDGGINPD---SLRGTHTGVWVGVSG----- 115
Query: 278 VFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNA 337
+ EAL + + + + M + L+ + GP+ ++ TAC++S + NA
Sbjct: 116 --SETSEALSRDPETLVGYSMVGCQRAMMANRLSFFFDFRGPSIALDTACSSSLMALQNA 173
Query: 338 ANHIIRGEANVMLCGGSDAAVIP 360
I G+ + GG + + P
Sbjct: 174 YQAIHSGQCPAAIVGGINVLLKP 196
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 80/206 (38%), Gaps = 15/206 (7%)
Query: 224 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAI 283
V+P+ + MD LL + + + GI + G G LG K Y
Sbjct: 84 VSPREAAAMDPQQRLLLETSWELVENAGIDPHSLR-------GTATGVFLGVAKFGYGED 136
Query: 284 EALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
A + + + + V + S ++ +G GP+ S+ TAC++S + A + +
Sbjct: 137 TA---AAEDVEGYSVTGVAPAVASGRISYTMGLEGPSISVDTACSSSLVALHLAVESLRK 193
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXX 403
GE+++ + GG+ P F RAL+ S+ + DGF
Sbjct: 194 GESSMAVVGGAAVMATPGVFVDFSRQRALAADGR-----SKAFGAGADGFGFSEGVTLVL 248
Query: 404 XXXXXHAKKRGAKIYAEFRGGSFTSD 429
A++ G ++ A RG + D
Sbjct: 249 LERLSEARRNGHEVLAVVRGSALNQD 274
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 89/216 (41%), Gaps = 15/216 (6%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIE---TFDCTSFPTKIAA--EIKSFS 219
+ VV+ GM P + F+ NL+ GV ++ + P ++ ++ F
Sbjct: 2 EEVVIAGMSGKLPESENLEEFWANLIGGVDMVTADDRRWKAGLYGLPRRMGKLKDLSRFD 61
Query: 220 TDGW-VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKV 278
+ V K + MD + LL +A+ DGGI L + GV +G
Sbjct: 62 ASFFGVHSKQANTMDPQLRMLLEVTYEAIVDGGINP---ASLRGTSTGVWVGVSSS---- 114
Query: 279 FYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAA 338
DA EAL + + + + M + L+ + GP+ +I TAC++S + +A
Sbjct: 115 --DASEALSRDPETLVGYSMIGCQRAMMANRLSFFFDFKGPSITIDTACSSSLLALQSAY 172
Query: 339 NHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQ 374
I GE + + GG + + P F+ LSQ
Sbjct: 173 QAIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLSQ 208
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 97/245 (39%), Gaps = 30/245 (12%)
Query: 222 GW------VAPKLSKRMDKFMLYLLTAGKKALADGGITE--DVMNELDKSKCGVLIGSGL 273
GW ++ + ++D L++L + +A GIT+ ++ + S+ G GSG+
Sbjct: 993 GWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGM 1052
Query: 274 GGMKVFYDAIEALRISYK---KMNPF---CVPFATTNMGSAMLAMDL-GWMGPNYSISTA 326
GG + ALR +K K P + + N SA + M L GP + A
Sbjct: 1053 GG-------VSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGA 1105
Query: 327 CATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALS------QRNNDPT 380
CATS + I+ G+A + + GG D G F +A S + P
Sbjct: 1106 CATSVESVDIGVETILSGKARICIVGGYD-DFQEEGSFEFGNMKATSNTLEEFEHGRTPA 1164
Query: 381 KASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
+ SRP R+GF+ A K G IY + +D + P P G
Sbjct: 1165 EMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAP-G 1223
Query: 441 KSAMS 445
K ++
Sbjct: 1224 KGILT 1228
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 93/238 (39%), Gaps = 29/238 (12%)
Query: 222 GW------VAPKLSKRMDKFMLYLLTAGKKALADGGITE--DVMNELDKSKCGVLIGSGL 273
GW ++ + ++D L++L + +A GIT+ ++ + S+ G GSG+
Sbjct: 1192 GWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGM 1251
Query: 274 GGMKVFYDAIEALRISYK---KMNPF---CVPFATTNMGSAMLAMDL-GWMGPNYSISTA 326
GG + ALR +K K P + + N SA + M L GP + A
Sbjct: 1252 GG-------VSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGA 1304
Query: 327 CATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALS------QRNNDPT 380
CATS + I+ G+A + + GG D G F +A S + P
Sbjct: 1305 CATSVESVDIGVETILSGKARICIVGGYD-DFQEEGSFEFGNMKATSNTLEEFEHGRTPA 1363
Query: 381 KASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHP 438
+ SRP R+GF+ A K G IY + +D + P P
Sbjct: 1364 EMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAP 1421
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 93/238 (39%), Gaps = 29/238 (12%)
Query: 222 GW------VAPKLSKRMDKFMLYLLTAGKKALADGGITE--DVMNELDKSKCGVLIGSGL 273
GW ++ + ++D L++L + +A GIT+ ++ + S+ G GSG+
Sbjct: 1192 GWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGM 1251
Query: 274 GGMKVFYDAIEALRISYK---KMNPF---CVPFATTNMGSAMLAMDL-GWMGPNYSISTA 326
GG + ALR +K K P + + N SA + M L GP + A
Sbjct: 1252 GG-------VSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGA 1304
Query: 327 CATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALS------QRNNDPT 380
CATS + I+ G+A + + GG D G F +A S + P
Sbjct: 1305 CATSVESVDIGVETILSGKARICIVGGYD-DFQEEGSFEFGNMKATSNTLEEFEHGRTPA 1363
Query: 381 KASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHP 438
+ SRP R+GF+ A K G IY + +D + P P
Sbjct: 1364 EMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAP 1421
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 5/127 (3%)
Query: 303 TNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG 362
+++ S +A LG GP ++ TAC++ + A + R E + L GG P
Sbjct: 175 SSVASGRVAYCLGLEGPAXTVDTACSSGLTALHLAXESLRRDECGLALAGGVTVXSSP-- 232
Query: 363 LGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFR 422
G F R SQ +P+ DGF + A++ G + A R
Sbjct: 233 -GAFTEFR--SQGGLAADGRCKPFSKAADGFGLAEGAGVLVLQRLSAARREGRPVLAVLR 289
Query: 423 GGSFTSD 429
G + D
Sbjct: 290 GSAVNQD 296
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,819,511
Number of Sequences: 62578
Number of extensions: 423256
Number of successful extensions: 805
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 675
Number of HSP's gapped (non-prelim): 46
length of query: 470
length of database: 14,973,337
effective HSP length: 102
effective length of query: 368
effective length of database: 8,590,381
effective search space: 3161260208
effective search space used: 3161260208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)