Query 012131
Match_columns 470
No_of_seqs 154 out of 1649
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 03:22:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012131.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012131hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 5.5E-54 1.9E-58 433.4 41.1 415 20-444 5-433 (445)
2 3gia_A Uncharacterized protein 100.0 8.3E-51 2.8E-55 410.0 44.1 420 20-449 3-430 (444)
3 4djk_A Probable glutamate/gamm 100.0 9.7E-51 3.3E-55 416.8 43.3 392 18-413 6-427 (511)
4 2jln_A MHP1; hydantoin, transp 99.4 7.6E-11 2.6E-15 119.1 29.8 305 1-315 1-329 (501)
5 3dh4_A Sodium/glucose cotransp 98.1 0.005 1.7E-07 62.3 29.5 110 21-133 18-130 (530)
6 2xq2_A Sodium/glucose cotransp 97.8 0.042 1.4E-06 56.3 34.2 280 22-310 48-375 (593)
7 2a65_A Leutaa, Na(+):neurotran 97.6 0.068 2.3E-06 53.4 31.9 216 26-245 10-285 (519)
8 4ain_A Glycine betaine transpo 90.4 15 0.00051 36.4 17.4 83 87-169 179-271 (539)
9 2wsw_A BCCT family betaine/car 86.7 26 0.00088 34.6 30.7 87 87-173 178-273 (509)
10 3gia_A Uncharacterized protein 73.5 65 0.0022 30.8 27.7 64 390-454 368-432 (444)
11 2i68_A Protein EMRE; transmemb 36.1 98 0.0034 24.3 6.6 15 421-435 87-101 (137)
12 2knc_A Integrin alpha-IIB; tra 29.2 1.2E+02 0.004 19.6 4.7 9 432-440 28-36 (54)
13 3rko_J NADH-quinone oxidoreduc 20.6 3.3E+02 0.011 22.6 7.3 37 147-183 35-71 (184)
14 2jln_A MHP1; hydantoin, transp 20.5 5.9E+02 0.02 24.7 11.0 58 119-177 124-181 (501)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=5.5e-54 Score=433.43 Aligned_cols=415 Identities=18% Similarity=0.250 Sum_probs=351.1
Q ss_pred ccccccchhhHHHhHhhhhcc-cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhC
Q 012131 20 ERFQKVSVIPLVFLIFYEVSG-GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALG 98 (470)
Q Consensus 20 ~~~r~l~~~~~~~~~~~~v~g-g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g 98 (470)
++||+++.+++.++.+++++| |++..+..+..+||. .+++|++++++ .++.+++|+|+++++|++||.|+|+++.+|
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~-~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G 82 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIG-ALGLSMVYAKMSFLDPSPGGSYAYARRCFG 82 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHH-HHHHHHHHHHHHHHCCCTTTHHHHHHHHSC
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHH-HHHHHHHHHHHHccCCCCCCchhhHHhHcC
Confidence 478899999999999999988 888888777778885 67999999986 888999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 012131 99 PHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPF 178 (470)
Q Consensus 99 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~ 178 (470)
|.+|+..+|.+++.+....+..+..++++++.++|...++++..++++++++++..+|++|+|..++++.+...++++.+
T Consensus 83 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~ 162 (445)
T 3l1l_A 83 PFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPI 162 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888766667788889899999999999999999999999999999888
Q ss_pred HHHHHHHhhccCCCcccc-cccc-c---cchHHHHHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHHHHHHHHH
Q 012131 179 ALMGLIAIPRLKPWRWCM-VDLK-N---VNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFP 253 (470)
Q Consensus 179 ~~~~i~~~~~~~~~~~~~-~~~~-~---~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~ 253 (470)
+++.+.++...+++++.+ .+.. . .++...+...+|+|.|+|.+++++||+|||+|++||+++.+..++.++|++.
T Consensus 163 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~ 242 (445)
T 3l1l_A 163 VGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLS 242 (445)
T ss_dssp HHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHH
Confidence 888777766655544421 1111 1 1223333445799999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCcccccccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhhhhcCCCCC
Q 012131 254 LLIGTGAAPVHRELWSDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYGT 333 (470)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~r~~~ 333 (470)
.+......|.++...++.|+.+++++..++++..++.+..+++.+++.++.+.+.+|.+++|+|||.+|++|+|+||+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~ 322 (445)
T 3l1l_A 243 TTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGT 322 (445)
T ss_dssp HHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCTTCC
T ss_pred HHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCCCCC
Confidence 99999999998887788899999999988999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCchhhHHHhhhhh
Q 012131 334 PLVGILFSASGVILLSWL--------SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILLCIPP 405 (470)
Q Consensus 334 P~~ai~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (470)
|++++++..+++.++.+. .++.+.++.++...+.|.+..++++++|+|+| .+ |.|.. .+...+.
T Consensus 323 P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~~---r~~~~----~~~~~~~ 394 (445)
T 3l1l_A 323 PVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-GK---ARPAY----LAVTTIA 394 (445)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-GG---GCTTT----HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-cc---ccchh----HHHHHHH
Confidence 999999999987665543 26788999999999999999999999998876 22 33333 2234445
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhhhhHHHHHHHhhc
Q 012131 406 TLLILVVLALASPKVMAISVIAVLIGFFIQPCMTYAEKR 444 (470)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 444 (470)
.+++.+..+..++.....+..+.++|+.+|.+++|++++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 395 FLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 556666667778888888899999999988877655443
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=8.3e-51 Score=410.02 Aligned_cols=420 Identities=17% Similarity=0.208 Sum_probs=335.3
Q ss_pred ccccccchhhHHHhHhhhhcc-cccchhh-HHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhh
Q 012131 20 ERFQKVSVIPLVFLIFYEVSG-GPFGVED-SVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASAL 97 (470)
Q Consensus 20 ~~~r~l~~~~~~~~~~~~v~g-g~~~~~~-~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~ 97 (470)
++||+++.+++.+++++.++| |++..+. ....+|| ..+++|++++++ .++.+++|+|+++++|++||.|+|+++.+
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~-~~~~~~~~~el~~~~P~~Gg~y~~~~~~~ 80 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIY-ALLVAYSYTKLGAKIVSNAGPIAFIHKAI 80 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHH-HHHHHHHHHHHHTTCCCTTTHHHHHHHHH
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCcHHHhHHHHh
Confidence 368999999999999999888 7777654 4455888 578999999986 88899999999999999999999999999
Q ss_pred CChH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 012131 98 GPHW-GFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLV 176 (470)
Q Consensus 98 g~~~-g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~ 176 (470)
||++ +...+|.+++.+....+.++..+++|++..++...+++...+.+.++++++..+|++|+|..++++.+...++++
T Consensus 81 G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~ 160 (444)
T 3gia_A 81 GDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLL 160 (444)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9973 555689999999999999999999999998876555556667888889999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCccccccccccchHHHHHH---HHhhhhhHHHhhhhhccccCCCCchhHHHHHHHHHHHHHHHHH
Q 012131 177 PFALMGLIAIPRLKPWRWCMVDLKNVNWGLYLNT---LFWNLNYWDSISTLVGEVEDPGKTLPRALFYALILVVFAYFFP 253 (470)
Q Consensus 177 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~ 253 (470)
.++++.+.++...+++++.+. ..+.++.+++.+ .+|+|.|+|.+++++||+|||+|++||++..+..++.++|++.
T Consensus 161 ~~~~~ii~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y~~~ 239 (444)
T 3gia_A 161 ILGLFIFAGLITIHPSYVIPD-LAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGV 239 (444)
T ss_dssp HHHHHHHHHHHHCCGGGTSCC-CSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcChhhcCCC-CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHHHHHHH
Confidence 988888887777666665432 223445444433 3699999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCcccc-cccHHHHHHHHhcchhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhhcCCCchhhhhcCCCC
Q 012131 254 LLIGTGAAPVHRELW-SDGYFSVIAKLIGGVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAERGMLPEIFARRSQYG 332 (470)
Q Consensus 254 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~r~~ 332 (470)
.+......|.++... .+.|+.++.+...++++..++.+..+++.+++.++.+.+.+|.+++|||||.+|++|+|+|| +
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~f~~~~~-~ 318 (444)
T 3gia_A 240 AISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVW-F 318 (444)
T ss_dssp HHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSSCCTTSC-C
T ss_pred HHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHhCCCC-C
Confidence 999998888877543 45688888888878888888999999999999999999999999999999999999999985 5
Q ss_pred CChHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccCCchhhHHHhhhhhHHHHHH
Q 012131 333 TPLVGILFSASGVILLSWL-SFQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIRPYKVPLGTVGAILLCIPPTLLILV 411 (470)
Q Consensus 333 ~P~~ai~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (470)
+|.+++++..++++++.+. +++.+.++.++...+.|.+..++++++|||+|+. | .......+.+........+
T Consensus 319 ~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~----~~~~~~~~~~~~~~~~~~~ 392 (444)
T 3gia_A 319 KSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVGGR--K----EIVIFSFIVVLGVFLLLLY 392 (444)
T ss_dssp SCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCC--H----HHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc--c----hHHHHHHHHHHHHHHHHHH
Confidence 6999999999988765544 7899999999999999999999999999887542 1 1111111111111111112
Q ss_pred HHHhccchHHHHHHHHHHHhhhhHHHHHHHhhcccccc
Q 012131 412 VLALASPKVMAISVIAVLIGFFIQPCMTYAEKRQWFRF 449 (470)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 449 (470)
.....++..........+.....+..++++++|+..+.
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (444)
T 3gia_A 393 YQWITNRFVFYGIIATFIGVLIFEIIYRKVTKRTFSNN 430 (444)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCGG
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHhccCCCcCc
Confidence 22223344455555556666666666666665554433
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=9.7e-51 Score=416.84 Aligned_cols=392 Identities=20% Similarity=0.280 Sum_probs=296.5
Q ss_pred ccccccccchhhHHHhHhhhhcccccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCccCCchhHhHHH
Q 012131 18 KLERFQKVSVIPLVFLIFYEVSGGPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGT--MFPENGGYVVWVAS 95 (470)
Q Consensus 18 ~~~~~r~l~~~~~~~~~~~~v~gg~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~--~~p~~GG~y~~~~~ 95 (470)
+++++|+++++++.+++++.++| ++..+. ...+||. .++.++++++++.++.+++|+|+++ ++| +||.|+|+++
T Consensus 6 ~~~~~r~l~~~~~~~l~~~~~ig-~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~~~~ 81 (511)
T 4djk_A 6 QTGKAKQLTLLGFFAITASMVMA-VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAWVSN 81 (511)
T ss_dssp ------CCCHHHHHHHTGGGGCC-GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHHHHH
T ss_pred cCccCccccHHHHHHHHHHHHHh-hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhhHHh
Confidence 44588999999999999999876 444444 4557875 4456666666546778999999999 999 9999999999
Q ss_pred hhCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--ccccC-CchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 012131 96 ALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSA--IPALE-GGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGV 172 (470)
Q Consensus 96 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~ 172 (470)
.+||++|+..||.+|+++....+......++++.++ .|... +++...++++++++++..+|++|+|..++++.+...
T Consensus 82 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~ 161 (511)
T 4djk_A 82 TLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFF 161 (511)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHH
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 999999999999999999999999988888888777 44443 356678888899999999999999999999999877
Q ss_pred HHHHH-HHHHHHHHhh---ccCCC----ccccc--cccccchHHHHHHHHhhhhhHHHhhhhhccccCCCCchhHHHHHH
Q 012131 173 FSLVP-FALMGLIAIP---RLKPW----RWCMV--DLKNVNWGLYLNTLFWNLNYWDSISTLVGEVEDPGKTLPRALFYA 242 (470)
Q Consensus 173 ~~i~~-~~~~~i~~~~---~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ai~~~ 242 (470)
++++. ++++++.++. ..++. ++.+. +..+.+....+...+|+|.|+|.+++++||+|||+|++||+++.+
T Consensus 162 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~ 241 (511)
T 4djk_A 162 AGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLL 241 (511)
T ss_dssp HTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHHHH
Confidence 64433 3333333332 12111 11111 111122223445568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcccccccH---HHHHHHHhc--chhHHHHHHHHHHHHhHHHHHHHhhhhhHHHHhhhh
Q 012131 243 LILVVFAYFFPLLIGTGAAPVHRELWSDGY---FSVIAKLIG--GVWLRTWIQGASAVSNMGMFIAEMSSDSFQLLGMAE 317 (470)
Q Consensus 243 ~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 317 (470)
+.++.++|++..++.....|.++....+.+ +.++.+..+ .++...++.+..+++.+++.++.+.+.+|.++++||
T Consensus 242 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ar 321 (511)
T 4djk_A 242 MVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQ 321 (511)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999998886554432 333333344 467788888999999999999999999999999999
Q ss_pred cCCCchhhhhcCCCCCChHHHHHHHHHHHH-HHHH-h--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 012131 318 RGMLPEIFARRSQYGTPLVGILFSASGVIL-LSWL-S--------FQEIVAAENFLYCFAMIMEFIAFVKLRMQYPEAIR 387 (470)
Q Consensus 318 d~~lP~~~~~~~r~~~P~~ai~~~~~~~~~-~~~~-~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (470)
||.+|++|+|+||+++|++|+++..++..+ +... + ++.+.++.++...++|.+..++++++|+|+|+.+|
T Consensus 322 dg~lP~~~~~~~~~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~ 401 (511)
T 4djk_A 322 KNLLPAAFAKMNKNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKR 401 (511)
T ss_dssp GGGCSSSCCCCCSSSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCC
T ss_pred CCcccHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999998544332 2221 2 67889999999999999999999999999998899
Q ss_pred CcccCCchhhHHHhhhhhHHHHHHHH
Q 012131 388 PYKVPLGTVGAILLCIPPTLLILVVL 413 (470)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (470)
|||.|.+.....++.++..+++++..
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (511)
T 4djk_A 402 TFNIPGGKGVKLVVAIVGLLTSIMAF 427 (511)
T ss_dssp SCCCSSTTHHHHHHHHHHHHHHHHHH
T ss_pred CeecCCCchHHHHHHHHHHHHHHHHH
Confidence 99999765543433444444444433
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.45 E-value=7.6e-11 Score=119.13 Aligned_cols=305 Identities=12% Similarity=0.011 Sum_probs=155.9
Q ss_pred CCCCcccc-ee-eCCCCCcccccccccchhhHHHhHhhhhcc-cccchhhHHhh-hChHHHHHHHHHHHHHHHHHHHHHH
Q 012131 1 MESNNVHY-VQ-LGEDSSPKLERFQKVSVIPLVFLIFYEVSG-GPFGVEDSVMA-AGPLLALIGFLFFPFIWSIPEALIT 76 (470)
Q Consensus 1 m~~~~~~~-~~-~~~~~~~~~~~~r~l~~~~~~~~~~~~v~g-g~~~~~~~~~~-~g~~~~~~~~ii~~~~~~~~~al~~ 76 (470)
|++++.++ +. ++++-++.++++|+.++++...+=++...+ +.+..+..... -+....+++.+++.++.+++ .
T Consensus 1 m~~~~~~~~~~~e~~~i~pvp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~----~ 76 (501)
T 2jln_A 1 MNSTPIEEARSLLNPSNAPTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVIL----L 76 (501)
T ss_dssp -------CCCBCCCSTTSCCCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHH----H
T ss_pred CCCCCCCCCCccccCCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHH----H
Confidence 55554442 22 233334455677889999998888776544 22323333322 12233455555555543333 3
Q ss_pred HHhhccCccCCchhH-hHHHhhCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Q 012131 77 AEMGTMFPENGGYVV-WVASALGPHWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYM 155 (470)
Q Consensus 77 ~el~~~~p~~GG~y~-~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (470)
+-++..-|+.|-.|. ..+..||++.+.+......+..+...+......++.+...+....+..+.++..+++.++...+
T Consensus 77 ~l~~~~G~~~Gl~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~ 156 (501)
T 2jln_A 77 FFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVT 156 (501)
T ss_dssp HHHTHHHHHHCCCHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred HHHhHHHhhcCCChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence 334555555454444 7778899999988888877777776666666666665554421100011344455566677788
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--Cccccccc--cccchHHHHHHH-HhhhhhHHHhhhhhccccC
Q 012131 156 NYRGLTIVGWVAIVLGVFSLVPFALMGLIAIPRLKP--WRWCMVDL--KNVNWGLYLNTL-FWNLNYWDSISTLVGEVED 230 (470)
Q Consensus 156 n~~g~~~~~~~~~i~~~~~i~~~~~~~i~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~-~~~~~G~e~~~~~~~E~k~ 230 (470)
.+.|.|...+++.+...+.++.++.+.+..+.+.+. .+...... ...++...+... -+...+.-..+.++.+.|+
T Consensus 157 ~~~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~ 236 (501)
T 2jln_A 157 TFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKV 236 (501)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCC
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCC
Confidence 899999999999988877766666665555544332 11111111 111233222221 1222333446778888888
Q ss_pred CCCc-----------hhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccccHHHHHHHHhcchhH-HHHHH-HHHHHHh
Q 012131 231 PGKT-----------LPRALFYALILVVFAYFFPLLIGTGAAPVHRELWSDGYFSVIAKLIGGVWL-RTWIQ-GASAVSN 297 (470)
Q Consensus 231 P~k~-----------ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~ 297 (470)
+++. .-++...+..+...+..+........ ....+|...+.+.+.++.. ..+.. +...++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~------~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~ 310 (501)
T 2jln_A 237 DPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVL------VGEWNPVIAITEVVGGVSIPMAILFQVFVLLAT 310 (501)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred CccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh------ccccCHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 7551 22333333333332222222211111 1234566555554444433 45555 5666666
Q ss_pred HHHHHH-HhhhhhHHHHhh
Q 012131 298 MGMFIA-EMSSDSFQLLGM 315 (470)
Q Consensus 298 ~~~~~~-~~~~~sR~l~~~ 315 (470)
+++... .+++.+--+..+
T Consensus 311 i~tn~~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 311 WSTNPAANLLSPAYTLCST 329 (501)
T ss_dssp HTTHHHHHTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHh
Confidence 665553 555555444443
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.07 E-value=0.005 Score=62.33 Aligned_cols=110 Identities=7% Similarity=-0.154 Sum_probs=59.5
Q ss_pred cccccchhhHHHhHhhhhcc--cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhC
Q 012131 21 RFQKVSVIPLVFLIFYEVSG--GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALG 98 (470)
Q Consensus 21 ~~r~l~~~~~~~~~~~~v~g--g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g 98 (470)
-.|++++|...+-.+++..+ ...+.+......|-....+.|.. ++. .+..+..+...-++. +.-..+.|.++-||
T Consensus 18 aGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~-~~i~~~~~~p~~~~~-~~~T~~e~l~~Rfg 94 (530)
T 3dh4_A 18 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AIT-LIIVGKYFLPIFIEK-GIYTIPEFVEKRFN 94 (530)
T ss_dssp CCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHH-HHHHHHHTHHHHHHT-TCCSHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHH-HHHHHHHHHHHHHHc-CCccHHHHHHHHcC
Confidence 45889998887777666544 34556666555554322222221 111 111233233333332 33578999999999
Q ss_pred ChHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHhcc
Q 012131 99 PHWGFQQGWMKWLSGVI-DNALYPVLFLDYLKSAIP 133 (470)
Q Consensus 99 ~~~g~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 133 (470)
++...+......+.+.. ..+......+..++..++
T Consensus 95 ~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G 130 (530)
T 3dh4_A 95 KKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG 130 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 98877777655544433 233344444445555553
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.81 E-value=0.042 Score=56.35 Aligned_cols=280 Identities=11% Similarity=0.017 Sum_probs=123.1
Q ss_pred ccccchhhHHHhHhhhhcc--cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCchhHhHHHhhCC
Q 012131 22 FQKVSVIPLVFLIFYEVSG--GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMGTMFPENGGYVVWVASALGP 99 (470)
Q Consensus 22 ~r~l~~~~~~~~~~~~v~g--g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~~~~p~~GG~y~~~~~~~g~ 99 (470)
.|+++++...+-.+++..+ ...+.+......|-....+.|.. .+. .+..+..+...-++. +.-..+.|.++-||+
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~-~~~-~~~~~~~~~p~~~r~-~~~T~~e~l~~Rfg~ 124 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AIT-LIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 124 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHHH-HHH-HHHHHHTHHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHHH-HHH-HHHHHHHHHHHHHhC-CCCCcHHHHHHHccC
Confidence 5788888666655555433 34455555555554222122211 111 111233333333333 335789999999998
Q ss_pred hHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 012131 100 HWGFQQGWMKWLSGVI-DNALYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVPF 178 (470)
Q Consensus 100 ~~g~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~ 178 (470)
....+......+.+.. ..+......+..++..++. + .+....+...+...+...-|.|...+...+=.++.++..
T Consensus 125 ~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi---~-~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~iiml~~~ 200 (593)
T 2xq2_A 125 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILGI---P-LMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLVLGG 200 (593)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCC---C-HHHHHHHHHHHHHHHHHTTC---CCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---c-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 8877776655443333 3344444445555555542 1 122222222333444455567765554443333333332
Q ss_pred HHHHHHHhhc----------------cCCCccccccc-cc------cchHHHHHHH---HhhhhhHH-HhhhhhccccCC
Q 012131 179 ALMGLIAIPR----------------LKPWRWCMVDL-KN------VNWGLYLNTL---FWNLNYWD-SISTLVGEVEDP 231 (470)
Q Consensus 179 ~~~~i~~~~~----------------~~~~~~~~~~~-~~------~~~~~~~~~~---~~~~~G~e-~~~~~~~E~k~P 231 (470)
+++.+....+ .+++.+..... ++ ..+...+... ...+.|.+ ...+-.=+.||+
T Consensus 201 l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~q~~~qR~laaks~ 280 (593)
T 2xq2_A 201 FMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKSV 280 (593)
T ss_dssp HHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTTTCSHHHHHHTTSCH
T ss_pred HHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHHHHhhcCChHHHHHhheeCCH
Confidence 2222221110 01121211110 10 1122222111 11233333 122333467775
Q ss_pred CCchhHHHHHHHHHHHHHHHHHH---HHHHhc-cC--------------CCcccccccHHHHHHHHhcchhHHHHHHHHH
Q 012131 232 GKTLPRALFYALILVVFAYFFPL---LIGTGA-AP--------------VHRELWSDGYFSVIAKLIGGVWLRTWIQGAS 293 (470)
Q Consensus 232 ~k~ip~ai~~~~~~~~~~y~l~~---~~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (470)
|+..|+.+.+.........+.. ++.... .+ ..+....+..+..+. +..++++..++.+..
T Consensus 281 -k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~p~l~-~~lp~~l~gl~~a~l 358 (593)
T 2xq2_A 281 -SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLT-QFLPVGVKGVVFAAL 358 (593)
T ss_dssp -HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHHHHHH-HTSCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHHHHHH-HHcChhHHHHHHHHH
Confidence 7778888777665333333211 111111 00 111223344555556 667777777777777
Q ss_pred HHHhHHHHHHHhhhhhH
Q 012131 294 AVSNMGMFIAEMSSDSF 310 (470)
Q Consensus 294 ~~~~~~~~~~~~~~~sR 310 (470)
+.+..++..+.+.+.|-
T Consensus 359 laA~mST~~s~l~a~st 375 (593)
T 2xq2_A 359 AAAIVSSLASMLNSTAT 375 (593)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777776666554
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=97.62 E-value=0.068 Score=53.40 Aligned_cols=216 Identities=12% Similarity=0.081 Sum_probs=109.1
Q ss_pred chhhHHHhHhhhhcc--cccchhhHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHhh--c---cCccCCchhHhHHHhhC
Q 012131 26 SVIPLVFLIFYEVSG--GPFGVEDSVMAAGPLLALIGFLFFPFIWSIPEALITAEMG--T---MFPENGGYVVWVASALG 98 (470)
Q Consensus 26 ~~~~~~~~~~~~v~g--g~~~~~~~~~~~g~~~~~~~~ii~~~~~~~~~al~~~el~--~---~~p~~GG~y~~~~~~~g 98 (470)
+..+.+.-.+|..+| -+--.|+...+-|+...++-+++..+...+|.-+ .|++ + +..+.|..-.|- +.-.
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~--~E~alGq~~~~~~r~~~i~a~~-~l~~ 86 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMW--IEWAMGRYGGAQGHGTTPAIFY-LLWR 86 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHH--HHHHHHHHHHTTTCCSHHHHHH-HHSC
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH--HHHHhcccchhccCCCHHHHHH-HhcC
Confidence 345556666666656 4667899998866667888888888766777655 6654 3 122333333332 1111
Q ss_pred ChHHHHHHHHHHHHHhhhHHHHHHHHH--------------------------------HHHHHhccccC------C-ch
Q 012131 99 PHWGFQQGWMKWLSGVIDNALYPVLFL--------------------------------DYLKSAIPALE------G-GF 139 (470)
Q Consensus 99 ~~~g~~~g~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~------~-~~ 139 (470)
+......||...+.......-+....+ ++........+ + ++
T Consensus 87 ~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g~~~~ 166 (519)
T 2a65_A 87 NRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSL 166 (519)
T ss_dssp SHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCCCH
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccccCccH
Confidence 111111222211111111111111111 12222211100 0 13
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-----C---ccccccc----cccchHH
Q 012131 140 PRIVAVLLLTTALTYMNYRGL-TIVGWVAIVLGVFSLVPFALMGLIAIPRLKP-----W---RWCMVDL----KNVNWGL 206 (470)
Q Consensus 140 ~~~~~~~~~~~~~~~~n~~g~-~~~~~~~~i~~~~~i~~~~~~~i~~~~~~~~-----~---~~~~~~~----~~~~~~~ 206 (470)
...+.-.+..++...+..+|+ |...|+..++...-.+.++++.+-.+.-.++ + .+..++. ++.-|..
T Consensus 167 ~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw~~ 246 (519)
T 2a65_A 167 FAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIA 246 (519)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHHHH
Confidence 444444555566777788899 7788988887766666666555544422110 0 0001111 1234666
Q ss_pred HHHHHHhhhh-hHHHhhhhhccccCCCCchhHHHHHHHHH
Q 012131 207 YLNTLFWNLN-YWDSISTLVGEVEDPGKTLPRALFYALIL 245 (470)
Q Consensus 207 ~~~~~~~~~~-G~e~~~~~~~E~k~P~k~ip~ai~~~~~~ 245 (470)
....++|++. |+.....++.-.|+ +.|++|.-+.....
T Consensus 247 A~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~ 285 (519)
T 2a65_A 247 AVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATL 285 (519)
T ss_dssp HHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHH
Confidence 6666677664 66666666666664 67777765544443
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=90.37 E-value=15 Score=36.45 Aligned_cols=83 Identities=14% Similarity=0.110 Sum_probs=37.2
Q ss_pred CchhHhHHHh-hCChHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHhcccc-CCchHHHHHHHHHHHHHHHHHhhhh
Q 012131 87 GGYVVWVASA-LGPHWGFQQGWMKWLSGVIDNAL----YPVLFLDYLKSAIPAL-EGGFPRIVAVLLLTTALTYMNYRGL 160 (470)
Q Consensus 87 GG~y~~~~~~-~g~~~g~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~n~~g~ 160 (470)
...|-...+. ....+|.+.-....++.++..+. .+.....-++.++... .+...+..+.+++.++.+.-...|+
T Consensus 179 s~l~PllG~r~~~G~~G~~IDilav~atv~GvatSLGlg~~Qi~~Gl~~lfGi~~~~~~~qi~ii~vit~i~~~Sa~sGl 258 (539)
T 4ain_A 179 SAFVPLIGEKGAEGWLGKLIDILAIIATVFGTACSLGLGALQIGAGLSAANIIEDPSDWTIVGIVSVLTLAFIFSAISGV 258 (539)
T ss_dssp GGGHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCSTTTTTHHHHHHHHHHHHHHHC--
T ss_pred HHhHhhcCCCccCCcchhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445444432 33345666666655555554443 3333444455555432 2222333344444455555555554
Q ss_pred ----HHHHHHHHH
Q 012131 161 ----TIVGWVAIV 169 (470)
Q Consensus 161 ----~~~~~~~~i 169 (470)
|...+.|..
T Consensus 259 ~kGIk~LS~~N~~ 271 (539)
T 4ain_A 259 GKGIQYLSNANMV 271 (539)
T ss_dssp -CCHHHHGGGHCC
T ss_pred HHHHHHHHHHHHH
Confidence 555555543
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=86.71 E-value=26 Score=34.55 Aligned_cols=87 Identities=10% Similarity=-0.015 Sum_probs=38.7
Q ss_pred CchhHhHH-HhhCChHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhh-
Q 012131 87 GGYVVWVA-SALGPHWGFQQGWMKWLSGVIDNALY----PVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGL- 160 (470)
Q Consensus 87 GG~y~~~~-~~~g~~~g~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~- 160 (470)
...|--.. +.....+|.+.-....++.++..+.. +.....-+++++...++...+..+..++..+.+.-...|+
T Consensus 178 s~l~PllG~~r~~G~~G~~IDilav~at~~G~atsLGlg~~qi~~Gl~~lfGi~~~~~~qi~ii~vit~~~~~Sa~sGl~ 257 (509)
T 2wsw_A 178 STLVPLVGEKHVNGLFGTVVDNFYLVALILAMGTSLGLATPLVTECIQYLFGIPHTLQLDAIIISCWILLNAICVAFGLQ 257 (509)
T ss_dssp GGCHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHhHhhcCCcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45555554 22233456555555555544443332 3333344445443222223333344344444444455554
Q ss_pred ---HHHHHHHHHHHHH
Q 012131 161 ---TIVGWVAIVLGVF 173 (470)
Q Consensus 161 ---~~~~~~~~i~~~~ 173 (470)
|...+.|..+.+.
T Consensus 258 kGIk~LS~~N~~la~~ 273 (509)
T 2wsw_A 258 KGVKIASDVRTYLSFL 273 (509)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555544443
No 10
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=73.51 E-value=65 Score=30.78 Aligned_cols=64 Identities=9% Similarity=-0.136 Sum_probs=34.5
Q ss_pred ccCCchhhHHHhhhhhHHHHHHHHHhccch-HHHHHHHHHHHhhhhHHHHHHHhhccccccccccc
Q 012131 390 KVPLGTVGAILLCIPPTLLILVVLALASPK-VMAISVIAVLIGFFIQPCMTYAEKRQWFRFSMSSD 454 (470)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 454 (470)
|.|... ...+.+++..++..+......+. ............+.....+..+++++.++.++++.
T Consensus 368 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (444)
T 3gia_A 368 EVGGRK-EIVIFSFIVVLGVFLLLLYYQWITNRFVFYGIIATFIGVLIFEIIYRKVTKRTFSNNMY 432 (444)
T ss_dssp HHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCGGGT
T ss_pred cCCCcc-hHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhccCCCcCcee
Confidence 336654 44444444444444444433333 34455566666666677777777777666654443
No 11
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=36.06 E-value=98 Score=24.34 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhhhH
Q 012131 421 MAISVIAVLIGFFIQ 435 (470)
Q Consensus 421 ~~~~~~~~~~g~~~~ 435 (470)
-.+++.++++|+...
T Consensus 87 ~~~Gi~LIi~GV~ll 101 (137)
T 2i68_A 87 AIIGMMLICAGVLII 101 (137)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555554
No 12
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=29.17 E-value=1.2e+02 Score=19.62 Aligned_cols=9 Identities=0% Similarity=0.072 Sum_probs=3.6
Q ss_pred hhhHHHHHH
Q 012131 432 FFIQPCMTY 440 (470)
Q Consensus 432 ~~~~~~~~~ 440 (470)
...+..|+.
T Consensus 28 li~~~LwK~ 36 (54)
T 2knc_A 28 ILVLAMWKV 36 (54)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 333444443
No 13
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=20.63 E-value=3.3e+02 Score=22.60 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012131 147 LLTTALTYMNYRGLTIVGWVAIVLGVFSLVPFALMGL 183 (470)
Q Consensus 147 ~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~~~~~~i 183 (470)
.+.......-..|....+-+|.+.=...+..+.++.+
T Consensus 35 ~f~~~a~l~~ll~a~Fla~~qilVYvGAi~VLflFvv 71 (184)
T 3rko_J 35 SLLAISGVFFSLGAYFAGALEIIVYAGAIMVLFVFVV 71 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555556677776666544444444444433
No 14
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=20.46 E-value=5.9e+02 Score=24.68 Aligned_cols=58 Identities=10% Similarity=-0.089 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 012131 119 LYPVLFLDYLKSAIPALEGGFPRIVAVLLLTTALTYMNYRGLTIVGWVAIVLGVFSLVP 177 (470)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~i~~~~~i~~ 177 (470)
.......+.+...+ ...+.+...++..++.+.....-+..++...++......+..+.
T Consensus 124 ~gg~al~~~~~~~~-g~~~~~v~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~i~~i~ 181 (501)
T 2jln_A 124 LGALALDEITRLLT-GFTNLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLAMGVY 181 (501)
T ss_dssp HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443 22333455555555666666777777777777765554444333
Done!