BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012132
(470 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Query: 337 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEI 396
I+DRV F+ K VA LA D+++ S+ E FG + +EAMA +P +GT GG E+
Sbjct: 265 IEDRVLFLGKQDNVAELLAMSDLMLLLSEK--ESFGLVLLEAMACGVPCIGTRVGGIPEV 322
Query: 397 VVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQ 446
+ +G TG L VG T +A ++L E MG+R E V E F+
Sbjct: 323 IQHGDTGYLCEVGD--TTGVADQAIQLLKDEELHRNMGERARESVYEQFR 370
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Query: 337 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEI 396
I+DRV F+ K VA LA D+++ S+ E FG + +EAMA +P +GT GG E+
Sbjct: 285 IEDRVLFLGKQDNVAELLAMSDLMLLLSEK--ESFGLVLLEAMACGVPCIGTRVGGIPEV 342
Query: 397 VVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQ 446
+ +G TG L VG T +A ++L E MG+R E V E F+
Sbjct: 343 IQHGDTGYLCEVGD--TTGVADQAIQLLKDEELHRNMGERARESVYEQFR 390
>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
Length = 416
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 83/375 (22%), Positives = 142/375 (37%), Gaps = 55/375 (14%)
Query: 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151
+L L LLR +G + W I+ P+E V + + + +G E++ +
Sbjct: 58 ILHSLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNAL----------QGNESLKLTEEM 107
Query: 152 DLIVLNTAVAG-KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID- 209
+ LN K++D + V +H+ + Y K P + ID
Sbjct: 108 KELYLNVNRENSKFIDLSSFDYV---------LVHDPQPAALIEFYEKKSPWLWRCHIDL 158
Query: 210 SHVTAEYWKNRTR-----ERLRIKMPDTYVVHLGNSKELM------EVAEDNVAKR---V 255
S E+W+ R +R +P+ L +K ++ ++E NV + +
Sbjct: 159 SSPNREFWEFLRRFVEKYDRYIFHLPEYVQPELDRNKAVIMPPSIDPLSEKNVELKQTEI 218
Query: 256 LREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESXXXXXXXXXXVPSVHAVIIG 315
LR + E V E + ++ KG ++ +P V +++G
Sbjct: 219 LR--ILERFDVDPEKPIITQVSRFDPWKG-------IFDVIEIYRKVKEKIPGVQLLLVG 269
Query: 316 ----SDMNAQTKFESELRNYVMQKKIQDRVHFVN-KTLTVAPYLAAIDVLVQNSQAWGEC 370
D FE LR ++ + + V + A DV++Q S G
Sbjct: 270 VMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIRAG-- 327
Query: 371 FGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERR 430
FG EAM PV+G A GG +V+G TG L E + + ++ L H E
Sbjct: 328 FGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVRDANEAV----EVVLYLLKHPEVS 383
Query: 431 LTMGKRGYERVKEIF 445
MG + ERV++ F
Sbjct: 384 KEMGAKAKERVRKNF 398
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 83/375 (22%), Positives = 142/375 (37%), Gaps = 55/375 (14%)
Query: 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151
+L L LLR +G + W I+ P+E V + + + +G E++ +
Sbjct: 58 ILHSLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNAL----------QGNESLKLTEEM 107
Query: 152 DLIVLNTAVAG-KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID- 209
+ LN K++D + V +H+ + Y K P + ID
Sbjct: 108 KELYLNVNRENSKFIDLSSFDYV---------LVHDPQPAALIEFYEKKSPWLWRCHIDL 158
Query: 210 SHVTAEYWKNRTR-----ERLRIKMPDTYVVHLGNSKELM------EVAEDNVAKR---V 255
S E+W+ R +R +P+ L +K ++ ++E NV + +
Sbjct: 159 SSPNREFWEFLRRFVEKYDRYIFHLPEYVQPELDRNKAVIMPPSIDPLSEKNVELKQTEI 218
Query: 256 LREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESXXXXXXXXXXVPSVHAVIIG 315
LR + E V E + ++ KG ++ +P V +++G
Sbjct: 219 LR--ILERFDVDPEKPIITQVSRFDPWKG-------IFDVIEIYRKVKEKIPGVQLLLVG 269
Query: 316 ----SDMNAQTKFESELRNYVMQKKIQDRVHFVN-KTLTVAPYLAAIDVLVQNSQAWGEC 370
D FE LR ++ + + V + A DV++Q S E
Sbjct: 270 VMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIR--EG 327
Query: 371 FGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERR 430
FG EAM PV+G A GG +V+G TG L E + + ++ L H E
Sbjct: 328 FGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVRDANEAV----EVVLYLLKHPEVS 383
Query: 431 LTMGKRGYERVKEIF 445
MG + ERV++ F
Sbjct: 384 KEMGAKAKERVRKNF 398
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 366 AWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGL-LHPV-GKEGITPLAKNIVKL 423
A E FG +EAM LP T GG EI+V+G +G + P G + LA K
Sbjct: 672 ALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKC 731
Query: 424 ATHVERRLTMGKRGYERVKEIFQEHHMAERI 454
+ K G +R++E + ++R+
Sbjct: 732 KEDPSHWDEISKGGLQRIEEKYTWQIYSQRL 762
>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
Length = 416
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 81/375 (21%), Positives = 140/375 (37%), Gaps = 55/375 (14%)
Query: 92 LLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151
+L L LLR +G + W I+ P+E V + + + +G E++ +
Sbjct: 58 ILHSLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNAL----------QGNESLKLTEEX 107
Query: 152 DLIVLNTAVAG-KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID- 209
+ LN K++D + V +H+ + Y K P + ID
Sbjct: 108 KELYLNVNRENSKFIDLSSFDYV---------LVHDPQPAALIEFYEKKSPWLWRCHIDL 158
Query: 210 SHVTAEYWKNRTR-----ERLRIKMPDTYVVHLGNSKELME------VAEDNVAKR---V 255
S E+W+ R +R +P+ L +K ++ ++E NV + +
Sbjct: 159 SSPNREFWEFLRRFVEKYDRYIFHLPEYVQPELDRNKAVIXPPSIDPLSEKNVELKQTEI 218
Query: 256 LREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESXXXXXXXXXXVPSVHAVIIG 315
LR + E V E + ++ KG ++ +P V +++G
Sbjct: 219 LR--ILERFDVDPEKPIITQVSRFDPWKG-------IFDVIEIYRKVKEKIPGVQLLLVG 269
Query: 316 ----SDMNAQTKFESELRNYVMQKKIQDRVHFVN-KTLTVAPYLAAIDVLVQNSQAWGEC 370
D FE LR ++ + + V + A DV++Q S E
Sbjct: 270 VXAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQXSIR--EG 327
Query: 371 FGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERR 430
FG EA PV+G A GG +V+G TG L E + + ++ L H E
Sbjct: 328 FGLTVTEAXWKGKPVIGRAVGGIKFQIVDGETGFLVRDANEAV----EVVLYLLKHPEVS 383
Query: 431 LTMGKRGYERVKEIF 445
G + ERV++ F
Sbjct: 384 KEXGAKAKERVRKNF 398
>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 369 ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGL-LHPV-GKEGITPLAKNIVKLATH 426
E FG +EA LP T GG EI+V+G +G + P G + LA K
Sbjct: 675 EAFGLTVVEAXTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKCKED 734
Query: 427 VERRLTMGKRGYERVKEIFQEHHMAERI 454
+ K G +R++E + ++R+
Sbjct: 735 PSHWDEISKGGLQRIEEKYTWQIYSQRL 762
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 12/136 (8%)
Query: 312 VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK---TLTVAPYLAAIDVLVQNSQAWG 368
VII + R+ + ++ R+ F++ + VA Y AA V V ++
Sbjct: 279 VIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVP---SFN 335
Query: 369 ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITP--LAKNIVKLATH 426
E FG + +EA A PV+ GG V G TGLL +G +P A + L
Sbjct: 336 ESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLL----VDGHSPHAWADALATLLDD 391
Query: 427 VERRLTMGKRGYERVK 442
E R+ MG+ E +
Sbjct: 392 DETRIRMGEDAVEHAR 407
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 12/136 (8%)
Query: 312 VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK---TLTVAPYLAAIDVLVQNSQAWG 368
VII + R+ + ++ R+ F++ + VA Y AA V V ++
Sbjct: 259 VIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVP---SFN 315
Query: 369 ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITP--LAKNIVKLATH 426
E FG + +EA A PV+ GG V G TGLL +G +P A + L
Sbjct: 316 ESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLL----VDGHSPHAWADALATLLDD 371
Query: 427 VERRLTMGKRGYERVK 442
E R+ MG+ E +
Sbjct: 372 DETRIRMGEDAVEHAR 387
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 369 ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 428
E FG +EAMA LP + T GG EI+ G G+L V E +A+ ++K E
Sbjct: 369 EPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVL--VDPEDPEDIARGLLKAFESEE 426
Query: 429 RRLTMGKRGYERVKEIF 445
++G +RV+E +
Sbjct: 427 TWSAYQEKGKQRVEERY 443
>pdb|2IW1|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 337 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEI 396
++ VHF + V+ +AA D+L+ A+ E G + +EA+ LPVL TA G
Sbjct: 251 VRSNVHFFSGRNDVSELMAAADLLLH--PAYQEAAGIVLLEAITAGLPVLTTAVCGYAHY 308
Query: 397 VVNGTTG--LLHPVGKEGIT 414
+ + G + P +E +
Sbjct: 309 IADANCGTVIAEPFSQEQLN 328
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 21/152 (13%)
Query: 257 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESXXXXXXXXXXVPSVHAVIIGS 316
+ R+ LG + + A + + KGQD + + + P +I+GS
Sbjct: 185 KSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAAR-------PDAQLLIVGS 237
Query: 317 DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWG-----E 369
++ES LR + + V F+ + + LAA D+ ++ G E
Sbjct: 238 G-----RYESTLRR--LATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVE 290
Query: 370 CFGRITIEAMAFQLPVLGTAAGGTTEIVVNGT 401
G + +EA A +PV+ +GG E V T
Sbjct: 291 GLGIVYLEAQACGVPVIAGTSGGAPETVTPAT 322
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 21/152 (13%)
Query: 257 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESXXXXXXXXXXVPSVHAVIIGS 316
+ R+ LG + + A + + KGQD + + + P +I+GS
Sbjct: 185 KSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAAR-------PDAQLLIVGS 237
Query: 317 DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWG-----E 369
++ES LR + + V F+ + + LAA D+ ++ G E
Sbjct: 238 G-----RYESTLRR--LATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVE 290
Query: 370 CFGRITIEAMAFQLPVLGTAAGGTTEIVVNGT 401
G + +EA A +PV+ +GG E V T
Sbjct: 291 GLGIVYLEAQACGVPVIAGTSGGAPETVTPAT 322
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 18/135 (13%)
Query: 272 LFAIINSVSRGKGQDLFLHSFYESXXXXXXXXXXVPSVHAVIIGSDMNAQTKFESELRNY 331
L A I + KG D+ + E V V++G+ + KFE L++
Sbjct: 329 LIAFIGRLEEQKGPDVMAAAIPELMQE---------DVQIVLLGT---GKKKFEKLLKS- 375
Query: 332 VMQKKIQDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389
M++K +V V K +L A DVL S+ E G I ++ M + P +
Sbjct: 376 -MEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRF--EPCGLIQLQGMRYGTPCACAS 432
Query: 390 AGGTTEIVVNGTTGL 404
GG + V+ G TG
Sbjct: 433 TGGLVDTVIEGKTGF 447
>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
(Wbaz-1)from Archaeoglobus Fulgidus, Northeast
Structural Genomics Target Gr29a
Length = 177
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%)
Query: 366 AWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLL 405
A E FG IEA A PV+ GG E V+N TG L
Sbjct: 105 AKDEDFGLTPIEAXASGKPVIAVNEGGFKETVINEKTGYL 144
>pdb|1KQF|B Chain B, Formate Dehydrogenase N From E. Coli
pdb|1KQG|B Chain B, Formate Dehydrogenase N From E. Coli
Length = 294
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 222 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRN 268
+E +K T +H G KE++E+AE VAK L+ E GV N
Sbjct: 171 QEPACVKTCPTGAIHFGTKKEMLELAEQRVAK--LKARGYEHAGVYN 215
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 366 AWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVK 422
++ E FG + +EAM + +A GG +I+ N TG+L G G LA I+K
Sbjct: 338 SYFEPFGLVALEAMCLGAIPIASAVGGLRDIITN-ETGILVKAGDPG--ELANAILK 391
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 366 AWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVK 422
++ E FG + +EAM + +A GG +I+ N TG+L G G LA I+K
Sbjct: 123 SYFEPFGLVALEAMCLGAIPIASAVGGLRDIITN-ETGILVKAGDPG--ELANAILK 176
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 366 AWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVK 422
++ E FG + +EAM + +A GG +I+ N TG+L G G LA I+K
Sbjct: 339 SYFEPFGLVALEAMCLGAIPIASAVGGLRDIITN-ETGILVKAGDPG--ELANAILK 392
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 366 AWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVK 422
++ E FG + +EAM + +A GG +I+ N TG+L G G LA I+K
Sbjct: 338 SYFEPFGLVALEAMCLGAIPIASAVGGLRDIITN-ETGILVKAGDPG--ELANAILK 391
>pdb|2VWS|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWS|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWS|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWT|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
pdb|2VWT|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
pdb|2VWT|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
Length = 267
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 306 VPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 364
V + V IG +D++A + + +Q+ I+ + + A +LA + Q
Sbjct: 167 VEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQC 226
Query: 365 QAWGECFGRITIEAMAF 381
AWG F + ++ M +
Sbjct: 227 LAWGANFVAVGVDTMLY 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,237,930
Number of Sequences: 62578
Number of extensions: 458003
Number of successful extensions: 1063
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1047
Number of HSP's gapped (non-prelim): 27
length of query: 470
length of database: 14,973,337
effective HSP length: 102
effective length of query: 368
effective length of database: 8,590,381
effective search space: 3161260208
effective search space used: 3161260208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)