Query 012132
Match_columns 470
No_of_seqs 350 out of 1603
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 23:23:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03088 stp2 sugar transfera 100.0 5.2E-45 1.1E-49 354.0 35.8 355 75-462 2-374 (374)
2 PLN02871 UDP-sulfoquinovose:DA 100.0 8.4E-44 1.8E-48 353.4 33.7 352 72-464 56-438 (465)
3 PRK14099 glycogen synthase; Pr 100.0 1.2E-43 2.6E-48 350.0 34.5 370 72-464 1-482 (485)
4 PLN02316 synthase/transferase 100.0 1.7E-43 3.7E-48 362.7 35.7 370 72-462 585-1035(1036)
5 cd03796 GT1_PIG-A_like This fa 100.0 2E-43 4.4E-48 344.7 34.1 345 76-466 1-373 (398)
6 PLN02939 transferase, transfer 100.0 5.4E-43 1.2E-47 352.4 37.2 377 72-466 479-972 (977)
7 TIGR03449 mycothiol_MshA UDP-N 100.0 2.5E-43 5.4E-48 345.8 33.3 343 87-463 20-404 (405)
8 PRK00654 glgA glycogen synthas 100.0 1.9E-43 4.2E-48 350.0 32.4 367 75-463 1-465 (466)
9 PRK15179 Vi polysaccharide bio 100.0 3.8E-43 8.2E-48 353.5 34.7 353 76-459 283-692 (694)
10 PRK15427 colanic acid biosynth 100.0 2.3E-43 5E-48 342.7 32.0 349 75-460 1-405 (406)
11 PRK10307 putative glycosyl tra 100.0 2E-43 4.3E-48 346.8 31.4 357 75-464 1-411 (412)
12 cd04962 GT1_like_5 This family 100.0 8E-43 1.7E-47 338.5 34.9 352 75-461 1-371 (371)
13 TIGR02472 sucr_P_syn_N sucrose 100.0 9.1E-43 2E-47 343.2 32.6 352 87-458 26-438 (439)
14 PRK15490 Vi polysaccharide bio 100.0 1.8E-41 3.9E-46 325.6 34.8 352 76-460 163-575 (578)
15 TIGR02095 glgA glycogen/starch 100.0 8.7E-42 1.9E-46 340.0 32.7 365 75-461 1-473 (473)
16 TIGR02149 glgA_Coryne glycogen 100.0 2E-41 4.3E-46 330.7 33.5 344 75-462 1-388 (388)
17 cd03792 GT1_Trehalose_phosphor 100.0 2.3E-41 5.1E-46 327.7 32.2 353 76-461 1-372 (372)
18 PRK14098 glycogen synthase; Pr 100.0 6.1E-41 1.3E-45 331.1 32.4 369 74-463 5-488 (489)
19 cd04951 GT1_WbdM_like This fam 100.0 1.5E-40 3.3E-45 321.2 34.0 348 76-459 1-359 (360)
20 cd03805 GT1_ALG2_like This fam 100.0 4.1E-41 9E-46 328.9 30.1 347 75-454 1-392 (392)
21 TIGR02468 sucrsPsyn_pln sucros 100.0 1.3E-40 2.8E-45 340.5 33.4 380 70-465 165-675 (1050)
22 PRK15484 lipopolysaccharide 1, 100.0 5.3E-40 1.1E-44 317.4 34.4 339 75-462 3-379 (380)
23 cd03819 GT1_WavL_like This fam 100.0 3.2E-40 7E-45 318.3 32.5 336 82-450 5-355 (355)
24 cd03807 GT1_WbnK_like This fam 100.0 8.4E-40 1.8E-44 315.7 33.3 345 76-459 1-365 (365)
25 cd03791 GT1_Glycogen_synthase_ 100.0 5.6E-40 1.2E-44 328.4 30.7 364 76-460 1-476 (476)
26 TIGR02470 sucr_synth sucrose s 100.0 3E-39 6.5E-44 324.5 34.5 372 72-458 253-745 (784)
27 cd03818 GT1_ExpC_like This fam 100.0 7.3E-40 1.6E-44 319.6 29.3 334 76-455 1-395 (396)
28 PRK09922 UDP-D-galactose:(gluc 100.0 8.6E-40 1.9E-44 314.7 28.4 342 75-463 1-358 (359)
29 cd05844 GT1_like_7 Glycosyltra 100.0 3.9E-39 8.4E-44 312.2 30.4 331 76-456 1-366 (367)
30 cd03812 GT1_CapH_like This fam 100.0 7.2E-39 1.6E-43 309.2 30.9 329 76-443 1-348 (358)
31 cd03825 GT1_wcfI_like This fam 100.0 1.2E-38 2.6E-43 308.5 30.9 326 75-461 1-365 (365)
32 cd03800 GT1_Sucrose_synthase T 100.0 1.4E-38 3.1E-43 311.7 31.7 348 76-455 8-397 (398)
33 PLN02949 transferase, transfer 100.0 1.2E-37 2.6E-42 304.1 37.4 352 74-464 33-460 (463)
34 cd03799 GT1_amsK_like This is 100.0 2.4E-38 5.2E-43 305.2 29.5 339 76-453 1-354 (355)
35 PRK10125 putative glycosyl tra 100.0 1.7E-38 3.7E-43 307.3 27.5 334 75-461 1-405 (405)
36 cd03802 GT1_AviGT4_like This f 100.0 1.4E-38 3E-43 304.3 26.5 321 75-459 1-335 (335)
37 PLN02846 digalactosyldiacylgly 100.0 5.2E-38 1.1E-42 301.5 28.7 337 73-460 3-391 (462)
38 cd03822 GT1_ecORF704_like This 100.0 1.1E-37 2.3E-42 301.7 31.2 348 76-459 1-366 (366)
39 cd03795 GT1_like_4 This family 100.0 1.2E-37 2.6E-42 300.6 30.1 332 76-451 1-357 (357)
40 KOG1111 N-acetylglucosaminyltr 100.0 7.3E-39 1.6E-43 282.4 19.5 343 75-465 1-371 (426)
41 PLN00142 sucrose synthase 100.0 1.7E-37 3.8E-42 311.7 29.6 219 229-458 519-768 (815)
42 cd03821 GT1_Bme6_like This fam 100.0 3E-37 6.5E-42 299.0 30.4 348 76-455 1-374 (375)
43 cd03813 GT1_like_3 This family 100.0 8.7E-38 1.9E-42 310.4 25.3 276 149-459 172-475 (475)
44 cd03820 GT1_amsD_like This fam 100.0 6.4E-37 1.4E-41 293.4 30.0 329 76-455 1-347 (348)
45 cd03814 GT1_like_2 This family 100.0 4.7E-37 1E-41 296.9 28.2 342 76-459 1-364 (364)
46 cd03817 GT1_UGDG_like This fam 100.0 2.1E-36 4.5E-41 293.1 32.3 347 76-460 1-373 (374)
47 cd03806 GT1_ALG11_like This fa 100.0 3.5E-36 7.5E-41 293.7 33.6 343 76-452 2-418 (419)
48 cd04955 GT1_like_6 This family 100.0 2.3E-36 5.1E-41 292.3 31.6 330 76-459 1-363 (363)
49 cd03801 GT1_YqgM_like This fam 100.0 1.4E-36 3.1E-41 293.2 29.5 351 76-459 1-374 (374)
50 cd03816 GT1_ALG1_like This fam 100.0 3.3E-36 7.1E-41 294.2 31.2 347 73-453 2-409 (415)
51 cd03808 GT1_cap1E_like This fa 100.0 5.5E-36 1.2E-40 288.2 31.5 331 76-455 1-358 (359)
52 cd03811 GT1_WabH_like This fam 100.0 2.2E-36 4.7E-41 290.1 28.5 337 76-446 1-352 (353)
53 TIGR03087 stp1 sugar transfera 100.0 5.6E-36 1.2E-40 292.2 30.8 340 77-459 1-395 (397)
54 cd03823 GT1_ExpE7_like This fa 100.0 1.5E-35 3.2E-40 285.8 31.6 335 76-459 1-358 (359)
55 cd03809 GT1_mtfB_like This fam 100.0 1.6E-36 3.4E-41 293.4 24.5 340 76-455 1-364 (365)
56 cd03794 GT1_wbuB_like This fam 100.0 1.4E-35 2.9E-40 289.0 28.8 345 76-455 1-394 (394)
57 cd03798 GT1_wlbH_like This fam 100.0 2.5E-35 5.4E-40 285.2 28.6 350 77-461 1-377 (377)
58 TIGR02918 accessory Sec system 100.0 2.7E-34 5.9E-39 283.2 28.3 273 148-461 209-500 (500)
59 PLN02501 digalactosyldiacylgly 100.0 4.3E-34 9.3E-39 277.4 28.8 334 74-458 322-707 (794)
60 cd04946 GT1_AmsK_like This fam 100.0 1.2E-33 2.5E-38 275.6 32.1 340 77-455 2-406 (407)
61 KOG0853 Glycosyltransferase [C 100.0 7.8E-33 1.7E-37 260.9 23.9 328 128-463 123-470 (495)
62 PHA01630 putative group 1 glyc 100.0 3.7E-32 8.1E-37 255.1 28.1 296 90-460 13-330 (331)
63 cd03804 GT1_wbaZ_like This fam 100.0 2.4E-32 5.2E-37 262.8 25.4 312 76-454 1-350 (351)
64 PHA01633 putative glycosyl tra 100.0 2.2E-31 4.7E-36 246.4 28.4 307 75-456 1-335 (335)
65 cd04949 GT1_gtfA_like This fam 100.0 7.7E-32 1.7E-36 261.5 24.6 263 149-454 98-372 (372)
66 PLN02275 transferase, transfer 100.0 1.1E-30 2.4E-35 251.8 26.6 308 75-424 5-371 (371)
67 COG0297 GlgA Glycogen synthase 100.0 5.3E-29 1.2E-33 239.3 30.6 372 75-466 1-483 (487)
68 PRK00726 murG undecaprenyldiph 100.0 6.5E-29 1.4E-33 239.3 26.6 323 74-459 1-356 (357)
69 PRK05749 3-deoxy-D-manno-octul 100.0 1.2E-27 2.5E-32 235.7 31.1 335 88-464 61-423 (425)
70 cd03788 GT1_TPS Trehalose-6-Ph 100.0 2.8E-28 6.1E-33 239.8 25.6 288 149-457 130-458 (460)
71 TIGR02400 trehalose_OtsA alpha 100.0 9.8E-28 2.1E-32 233.8 29.1 289 149-458 126-454 (456)
72 cd03793 GT1_Glycogen_synthase_ 100.0 9.1E-28 2E-32 231.4 27.1 303 149-463 147-589 (590)
73 PRK13609 diacylglycerol glucos 100.0 1.9E-27 4.2E-32 230.9 28.7 338 73-461 3-372 (380)
74 cd03785 GT1_MurG MurG is an N- 100.0 1.4E-27 3.1E-32 229.6 25.9 313 77-451 2-348 (350)
75 TIGR01133 murG undecaprenyldip 100.0 3.3E-27 7E-32 226.9 24.1 312 75-451 1-345 (348)
76 PF00534 Glycos_transf_1: Glyc 100.0 2.1E-27 4.5E-32 204.1 18.0 169 257-440 2-172 (172)
77 PLN02605 monogalactosyldiacylg 100.0 3.8E-26 8.1E-31 221.2 25.9 274 144-457 94-378 (382)
78 PLN03063 alpha,alpha-trehalose 99.9 2.6E-25 5.7E-30 229.8 29.0 295 150-464 147-481 (797)
79 PRK13608 diacylglycerol glucos 99.9 3.9E-25 8.5E-30 214.3 27.4 340 73-463 4-374 (391)
80 PRK14501 putative bifunctional 99.9 5.8E-24 1.3E-28 220.7 25.8 294 149-464 132-466 (726)
81 cd01635 Glycosyltransferase_GT 99.9 1.8E-23 4E-28 188.0 20.5 224 77-406 1-229 (229)
82 cd04950 GT1_like_1 Glycosyltra 99.9 4.1E-23 8.9E-28 199.5 21.8 261 148-460 100-371 (373)
83 TIGR02398 gluc_glyc_Psyn gluco 99.9 4.9E-21 1.1E-25 185.5 29.6 290 149-459 131-481 (487)
84 KOG1387 Glycosyltransferase [C 99.9 1.1E-20 2.3E-25 166.7 27.9 356 74-465 43-463 (465)
85 PRK00025 lpxB lipid-A-disaccha 99.9 2.6E-21 5.7E-26 188.1 26.2 338 74-463 1-376 (380)
86 TIGR00236 wecB UDP-N-acetylglu 99.9 1.7E-20 3.6E-25 181.1 25.9 316 75-437 1-345 (365)
87 COG0438 RfaG Glycosyltransfera 99.9 2.9E-19 6.2E-24 171.4 29.9 203 231-463 173-379 (381)
88 cd03786 GT1_UDP-GlcNAc_2-Epime 99.9 5.1E-20 1.1E-24 178.0 24.5 330 76-457 1-361 (363)
89 PRK09814 beta-1,6-galactofuran 99.9 6.4E-20 1.4E-24 174.1 21.7 282 86-443 14-315 (333)
90 PLN03064 alpha,alpha-trehalose 99.8 1.5E-18 3.3E-23 178.7 26.1 293 150-462 231-563 (934)
91 TIGR02094 more_P_ylases alpha- 99.8 2.3E-17 5E-22 164.9 25.2 186 266-458 385-598 (601)
92 TIGR00215 lpxB lipid-A-disacch 99.8 5.5E-17 1.2E-21 156.5 26.2 328 75-446 6-370 (385)
93 TIGR03713 acc_sec_asp1 accesso 99.8 2.4E-17 5.2E-22 162.9 24.1 218 199-458 269-519 (519)
94 KOG2941 Beta-1,4-mannosyltrans 99.8 1.7E-15 3.6E-20 134.3 29.8 352 73-454 11-435 (444)
95 PF13692 Glyco_trans_1_4: Glyc 99.8 1.5E-18 3.2E-23 142.6 8.0 133 270-426 2-135 (135)
96 cd04299 GT1_Glycogen_Phosphory 99.7 6.4E-15 1.4E-19 150.0 24.5 189 266-458 474-687 (778)
97 PF00982 Glyco_transf_20: Glyc 99.6 6.4E-13 1.4E-17 129.6 27.6 296 149-459 140-473 (474)
98 PRK12446 undecaprenyldiphospho 99.6 6.7E-13 1.5E-17 126.4 26.9 313 75-459 2-350 (352)
99 COG0707 MurG UDP-N-acetylgluco 99.6 5E-12 1.1E-16 119.0 30.1 310 87-460 11-353 (357)
100 PF05693 Glycogen_syn: Glycoge 99.6 6.1E-13 1.3E-17 128.5 24.0 255 202-465 221-586 (633)
101 PRK10117 trehalose-6-phosphate 99.6 1.7E-12 3.7E-17 124.9 26.0 296 149-462 122-455 (474)
102 PF13524 Glyco_trans_1_2: Glyc 99.6 2.2E-14 4.7E-19 108.8 9.1 92 359-456 1-92 (92)
103 PLN02205 alpha,alpha-trehalose 99.5 6.8E-11 1.5E-15 123.3 29.6 296 152-462 203-553 (854)
104 TIGR02919 accessory Sec system 99.5 1.3E-11 2.8E-16 119.5 21.9 185 201-439 238-424 (438)
105 PF13439 Glyco_transf_4: Glyco 99.4 9.6E-14 2.1E-18 119.4 6.0 158 77-245 1-177 (177)
106 COG0380 OtsA Trehalose-6-phosp 99.4 2E-10 4.4E-15 110.1 27.5 296 149-460 146-479 (486)
107 PF13844 Glyco_transf_41: Glyc 99.4 3.7E-10 8.1E-15 108.4 27.7 182 260-461 275-467 (468)
108 TIGR03590 PseG pseudaminic aci 99.4 2.5E-10 5.3E-15 105.2 24.1 253 76-390 1-268 (279)
109 COG3914 Spy Predicted O-linked 99.4 5.8E-10 1.3E-14 106.4 26.1 343 68-464 253-617 (620)
110 TIGR03492 conserved hypothetic 99.3 3.3E-10 7.1E-15 109.7 20.7 174 231-440 181-378 (396)
111 COG0763 LpxB Lipid A disacchar 99.3 1.2E-09 2.6E-14 100.5 22.4 320 74-438 1-356 (381)
112 COG1519 KdtA 3-deoxy-D-manno-o 99.3 5.8E-09 1.3E-13 97.1 25.9 317 88-443 60-403 (419)
113 PF02684 LpxB: Lipid-A-disacch 99.2 2.8E-09 6.1E-14 100.6 22.9 293 89-434 10-348 (373)
114 cd03784 GT1_Gtf_like This fami 99.2 1.1E-09 2.4E-14 107.4 20.9 92 336-435 285-380 (401)
115 TIGR03568 NeuC_NnaA UDP-N-acet 99.2 6.2E-09 1.3E-13 99.8 24.0 198 224-457 161-364 (365)
116 PF04007 DUF354: Protein of un 99.2 1.2E-08 2.7E-13 94.9 22.3 277 75-425 1-309 (335)
117 PF13528 Glyco_trans_1_3: Glyc 99.1 1.3E-09 2.8E-14 103.3 15.5 120 268-423 191-317 (318)
118 COG0381 WecB UDP-N-acetylgluco 99.1 1.8E-07 4E-12 86.6 25.4 339 72-462 1-372 (383)
119 PF13579 Glyco_trans_4_4: Glyc 99.0 1.1E-09 2.3E-14 92.3 6.5 135 87-238 1-160 (160)
120 PRK01021 lpxB lipid-A-disaccha 99.0 6.1E-07 1.3E-11 88.6 26.3 312 73-439 225-584 (608)
121 TIGR00661 MJ1255 conserved hyp 98.8 7.2E-07 1.6E-11 84.5 19.9 81 338-427 228-315 (321)
122 PF04464 Glyphos_transf: CDP-G 98.7 5.1E-06 1.1E-10 80.4 22.7 304 73-430 12-340 (369)
123 PF09314 DUF1972: Domain of un 98.6 5.5E-07 1.2E-11 76.0 12.0 152 74-240 1-185 (185)
124 COG1819 Glycosyl transferases, 98.6 7.3E-06 1.6E-10 79.6 21.2 160 269-459 237-400 (406)
125 PF02350 Epimerase_2: UDP-N-ac 98.6 1.9E-06 4E-11 81.9 16.7 270 143-458 60-345 (346)
126 COG3980 spsG Spore coat polysa 98.6 1.2E-05 2.6E-10 70.7 19.3 293 75-436 1-303 (318)
127 TIGR01426 MGT glycosyltransfer 98.6 1.1E-06 2.3E-11 86.0 14.4 114 337-458 273-390 (392)
128 PRK02797 4-alpha-L-fucosyltran 98.6 8.5E-06 1.8E-10 73.3 18.4 170 269-463 145-319 (322)
129 PRK14089 ipid-A-disaccharide s 98.5 1E-05 2.2E-10 76.3 18.8 250 74-388 1-260 (347)
130 COG4641 Uncharacterized protei 98.5 4.1E-06 8.9E-11 77.0 15.1 324 87-462 14-363 (373)
131 COG1817 Uncharacterized protei 98.4 7.4E-05 1.6E-09 66.9 19.9 271 90-428 13-316 (346)
132 PF07429 Glyco_transf_56: 4-al 98.4 0.00041 8.8E-09 63.7 24.3 269 147-461 75-356 (360)
133 KOG4626 O-linked N-acetylgluco 98.3 0.00013 2.7E-09 71.1 19.2 346 73-464 581-944 (966)
134 COG4671 Predicted glycosyl tra 98.3 0.00011 2.4E-09 66.9 17.8 142 268-427 218-366 (400)
135 KOG3742 Glycogen synthase [Car 98.3 9.3E-05 2E-09 69.1 17.6 112 348-462 492-614 (692)
136 PF13477 Glyco_trans_4_2: Glyc 98.3 9.1E-06 2E-10 66.6 10.1 96 76-187 1-109 (139)
137 PRK10017 colanic acid biosynth 98.2 0.0062 1.3E-07 59.5 29.0 329 75-432 1-398 (426)
138 COG0058 GlgP Glucan phosphoryl 98.0 7.2E-05 1.6E-09 75.7 12.2 143 266-410 483-632 (750)
139 PF04101 Glyco_tran_28_C: Glyc 97.9 4.7E-06 1E-10 70.7 2.5 92 339-436 55-154 (167)
140 PHA03392 egt ecdysteroid UDP-g 97.9 0.0002 4.3E-09 71.8 14.1 139 269-439 296-445 (507)
141 PF08323 Glyco_transf_5: Starc 97.8 3.4E-05 7.3E-10 69.7 6.4 39 76-114 1-43 (245)
142 PRK14986 glycogen phosphorylas 97.7 0.00095 2.1E-08 68.7 14.0 154 261-418 532-702 (815)
143 PF00343 Phosphorylase: Carboh 97.6 0.0024 5.2E-08 64.9 15.2 153 261-417 433-602 (713)
144 TIGR02093 P_ylase glycogen/sta 97.5 0.00057 1.2E-08 70.1 10.6 155 260-418 515-686 (794)
145 cd04300 GT1_Glycogen_Phosphory 97.5 0.001 2.2E-08 68.5 12.4 148 261-409 519-683 (797)
146 PRK14985 maltodextrin phosphor 97.3 0.0012 2.6E-08 67.7 9.8 148 261-409 518-682 (798)
147 KOG1050 Trehalose-6-phosphate 97.1 0.034 7.4E-07 57.5 17.7 189 231-431 240-445 (732)
148 PLN02670 transferase, transfer 97.0 0.016 3.4E-07 57.5 14.1 115 341-461 341-466 (472)
149 PF00201 UDPGT: UDP-glucoronos 97.0 0.012 2.7E-07 59.5 13.3 138 268-433 275-416 (500)
150 COG0859 RfaF ADP-heptose:LPS h 97.0 0.16 3.4E-06 48.3 19.9 100 269-389 175-277 (334)
151 cd03789 GT1_LPS_heptosyltransf 97.0 0.034 7.3E-07 51.5 15.0 97 272-389 124-224 (279)
152 PLN02448 UDP-glycosyltransfera 96.7 0.046 9.9E-07 54.4 14.8 95 339-438 323-428 (459)
153 PLN02410 UDP-glucoronosyl/UDP- 96.6 0.033 7.2E-07 55.0 12.3 91 339-438 324-421 (451)
154 COG3660 Predicted nucleoside-d 96.6 0.5 1.1E-05 41.9 20.9 120 257-392 150-275 (329)
155 PF11440 AGT: DNA alpha-glucos 96.6 0.3 6.5E-06 43.5 16.5 310 87-427 1-354 (355)
156 PLN03007 UDP-glucosyltransfera 96.5 0.095 2.1E-06 52.5 15.4 85 338-427 344-441 (482)
157 PLN02562 UDP-glycosyltransfera 96.5 0.052 1.1E-06 53.7 13.2 87 339-432 328-419 (448)
158 PLN02208 glycosyltransferase f 96.5 0.12 2.6E-06 51.0 15.4 96 339-439 311-415 (442)
159 TIGR03609 S_layer_CsaB polysac 96.3 0.49 1.1E-05 44.2 17.8 72 308-389 205-276 (298)
160 PLN02863 UDP-glucoronosyl/UDP- 96.2 0.2 4.3E-06 50.0 15.6 83 339-428 343-436 (477)
161 PLN02764 glycosyltransferase f 96.2 0.21 4.5E-06 49.3 15.4 93 340-439 318-421 (453)
162 PLN02210 UDP-glucosyl transfer 96.1 0.16 3.5E-06 50.4 14.1 84 340-428 325-417 (456)
163 PLN03004 UDP-glycosyltransfera 96.0 0.16 3.4E-06 50.2 13.3 87 339-430 334-428 (451)
164 PLN00414 glycosyltransferase f 95.9 0.43 9.4E-06 47.2 16.1 94 341-441 314-418 (446)
165 PF15024 Glyco_transf_18: Glyc 95.9 1.2 2.6E-05 44.3 18.5 148 274-460 281-455 (559)
166 PLN02173 UDP-glucosyl transfer 95.8 0.24 5.2E-06 48.9 13.9 94 339-438 317-419 (449)
167 PLN02992 coniferyl-alcohol glu 95.6 0.32 7E-06 48.4 14.0 84 339-427 338-428 (481)
168 PLN02167 UDP-glycosyltransfera 95.6 0.26 5.7E-06 49.3 13.3 81 340-427 341-435 (475)
169 PF06258 Mito_fiss_Elm1: Mitoc 95.6 0.47 1E-05 44.3 14.2 249 88-392 2-259 (311)
170 PLN02554 UDP-glycosyltransfera 95.5 0.65 1.4E-05 46.6 16.0 86 339-431 342-446 (481)
171 PLN02555 limonoid glucosyltran 95.5 0.62 1.3E-05 46.5 15.5 94 338-439 336-441 (480)
172 PLN02152 indole-3-acetate beta 95.2 0.35 7.6E-06 47.9 12.8 85 338-427 326-418 (455)
173 PF05159 Capsule_synth: Capsul 95.0 0.3 6.6E-06 44.8 11.1 104 268-389 115-225 (269)
174 TIGR02195 heptsyl_trn_II lipop 94.8 0.44 9.5E-06 45.3 12.0 109 258-388 162-276 (334)
175 PLN02207 UDP-glycosyltransfera 94.5 0.7 1.5E-05 45.9 12.6 82 339-425 332-425 (468)
176 PLN02534 UDP-glycosyltransfera 94.2 2.2 4.8E-05 42.7 15.6 82 339-425 344-443 (491)
177 PF01075 Glyco_transf_9: Glyco 94.2 0.5 1.1E-05 42.7 10.4 101 268-388 104-208 (247)
178 PLN00164 glucosyltransferase; 94.0 2.6 5.6E-05 42.3 15.8 95 340-439 340-445 (480)
179 PF12000 Glyco_trans_4_3: Gkyc 93.7 0.37 8E-06 40.4 7.7 37 201-244 134-170 (171)
180 PRK10964 ADP-heptose:LPS hepto 93.7 2.6 5.6E-05 39.9 14.6 99 268-389 177-279 (322)
181 PRK10422 lipopolysaccharide co 93.5 0.68 1.5E-05 44.4 10.4 102 269-389 183-288 (352)
182 PF04230 PS_pyruv_trans: Polys 93.4 2.4 5.1E-05 38.7 13.7 37 347-390 248-284 (286)
183 PRK10916 ADP-heptose:LPS hepto 93.4 1.3 2.7E-05 42.5 12.0 108 260-388 170-286 (348)
184 PF12038 DUF3524: Domain of un 93.3 0.9 1.9E-05 37.5 9.0 128 75-223 1-140 (168)
185 PF10087 DUF2325: Uncharacteri 93.0 0.32 6.9E-06 36.7 5.8 78 311-396 2-89 (97)
186 COG2327 WcaK Polysaccharide py 92.9 9 0.00019 36.7 21.3 100 324-432 251-357 (385)
187 KOG1192 UDP-glucuronosyl and U 92.8 1.4 3.1E-05 44.5 12.1 93 339-436 335-432 (496)
188 TIGR02193 heptsyl_trn_I lipopo 92.6 3.9 8.5E-05 38.5 14.1 98 268-388 178-279 (319)
189 TIGR02201 heptsyl_trn_III lipo 92.6 1.9 4.2E-05 41.1 12.0 102 268-388 180-285 (344)
190 KOG3349 Predicted glycosyltran 91.2 5 0.00011 32.5 10.6 99 270-389 4-107 (170)
191 PF06925 MGDG_synth: Monogalac 90.2 0.98 2.1E-05 38.1 6.5 82 143-237 82-167 (169)
192 PLN03015 UDP-glucosyl transfer 90.1 6 0.00013 39.4 12.7 80 341-425 337-425 (470)
193 PF03853 YjeF_N: YjeF-related 89.3 1.5 3.2E-05 37.0 6.9 81 73-156 24-105 (169)
194 PRK09739 hypothetical protein; 89.0 1.7 3.6E-05 37.9 7.2 42 72-113 1-43 (199)
195 PF03033 Glyco_transf_28: Glyc 88.4 1.3 2.8E-05 35.8 5.7 43 88-140 10-52 (139)
196 PRK06988 putative formyltransf 86.6 2.7 5.8E-05 39.5 7.4 78 74-158 2-85 (312)
197 COG0373 HemA Glutamyl-tRNA red 86.3 20 0.00042 34.9 13.0 87 309-410 203-296 (414)
198 PF03016 Exostosin: Exostosin 85.4 0.82 1.8E-05 42.7 3.4 69 348-420 228-299 (302)
199 PRK00207 sulfur transfer compl 84.8 2.2 4.8E-05 34.0 5.1 38 75-112 1-40 (128)
200 PF01113 DapB_N: Dihydrodipico 84.1 4.5 9.7E-05 32.1 6.6 44 348-393 59-102 (124)
201 KOG1021 Acetylglucosaminyltran 84.0 13 0.00027 37.2 11.1 95 348-449 335-434 (464)
202 PF01975 SurE: Survival protei 83.3 2.6 5.6E-05 36.5 5.2 39 75-116 1-39 (196)
203 TIGR02026 BchE magnesium-proto 83.1 4 8.7E-05 41.2 7.4 37 76-112 1-45 (497)
204 cd03146 GAT1_Peptidase_E Type 83.0 14 0.00031 32.4 10.0 86 307-392 30-124 (212)
205 PRK13940 glutamyl-tRNA reducta 82.2 24 0.00053 34.6 12.1 72 310-396 207-278 (414)
206 PRK05647 purN phosphoribosylgl 81.1 6.8 0.00015 34.0 7.1 74 74-158 1-88 (200)
207 PF03358 FMN_red: NADPH-depend 81.0 4.8 0.0001 33.1 6.0 40 75-114 1-41 (152)
208 PF11071 DUF2872: Protein of u 79.7 12 0.00026 29.4 7.0 39 351-392 67-110 (141)
209 KOG0780 Signal recognition par 79.1 59 0.0013 31.2 12.6 168 273-459 157-341 (483)
210 PRK05282 (alpha)-aspartyl dipe 78.7 28 0.00061 31.0 10.3 82 309-392 32-123 (233)
211 PF00185 OTCace: Aspartate/orn 78.7 14 0.0003 30.7 7.9 78 74-158 2-81 (158)
212 PLN02206 UDP-glucuronate decar 78.0 40 0.00087 33.5 12.3 34 73-112 118-151 (442)
213 PF00070 Pyr_redox: Pyridine n 77.6 11 0.00025 26.8 6.4 52 88-139 6-60 (80)
214 PF05686 Glyco_transf_90: Glyc 77.6 11 0.00024 36.7 8.1 86 375-462 230-319 (395)
215 PF04413 Glycos_transf_N: 3-De 77.1 21 0.00046 30.5 8.9 135 88-237 32-179 (186)
216 PRK00676 hemA glutamyl-tRNA re 77.0 68 0.0015 30.4 14.9 137 307-463 173-321 (338)
217 cd03129 GAT1_Peptidase_E_like 76.7 22 0.00047 31.1 9.1 86 307-392 28-124 (210)
218 COG0496 SurE Predicted acid ph 76.4 6.5 0.00014 35.2 5.5 38 75-116 1-38 (252)
219 smart00672 CAP10 Putative lipo 76.2 22 0.00048 32.3 9.1 91 371-462 157-250 (256)
220 PRK10840 transcriptional regul 74.1 39 0.00085 29.5 10.2 112 308-426 3-126 (216)
221 COG1887 TagB Putative glycosyl 73.9 91 0.002 30.3 16.4 179 221-428 163-355 (388)
222 PF08288 PIGA: PIGA (GPI ancho 73.5 4.2 9E-05 29.6 2.9 47 141-189 41-87 (90)
223 PF02951 GSH-S_N: Prokaryotic 72.7 6.3 0.00014 30.9 4.1 37 75-113 1-40 (119)
224 TIGR00460 fmt methionyl-tRNA f 72.4 16 0.00036 34.3 7.6 77 75-158 1-86 (313)
225 PHA03392 egt ecdysteroid UDP-g 72.3 5.6 0.00012 40.3 4.7 36 76-113 22-58 (507)
226 COG2984 ABC-type uncharacteriz 71.9 26 0.00056 32.6 8.3 84 307-392 157-249 (322)
227 PF08660 Alg14: Oligosaccharid 71.7 47 0.001 28.0 9.4 29 87-115 8-38 (170)
228 PLN02166 dTDP-glucose 4,6-dehy 71.6 28 0.00061 34.5 9.4 34 73-112 119-152 (436)
229 PRK00005 fmt methionyl-tRNA fo 71.0 19 0.00041 33.8 7.7 77 75-158 1-86 (309)
230 PRK13396 3-deoxy-7-phosphohept 70.9 62 0.0013 30.8 10.9 107 269-389 99-215 (352)
231 PRK05562 precorrin-2 dehydroge 70.6 77 0.0017 28.1 15.4 124 307-443 47-179 (223)
232 PF03401 TctC: Tripartite tric 70.5 83 0.0018 28.9 11.7 142 271-437 79-243 (274)
233 PF10933 DUF2827: Protein of u 70.0 42 0.0009 31.8 9.3 112 325-449 237-352 (364)
234 PRK06849 hypothetical protein; 69.8 17 0.00037 35.4 7.4 36 73-114 3-38 (389)
235 PRK00211 sulfur relay protein 69.5 11 0.00024 29.6 4.9 41 74-114 1-42 (119)
236 PRK08125 bifunctional UDP-gluc 68.2 17 0.00037 38.3 7.5 77 75-158 1-83 (660)
237 PRK13054 lipid kinase; Reviewe 68.0 17 0.00037 33.9 6.7 42 72-115 1-42 (300)
238 COG0394 Wzb Protein-tyrosine-p 67.9 16 0.00035 29.5 5.7 82 73-159 1-85 (139)
239 TIGR03646 YtoQ_fam YtoQ family 67.1 51 0.0011 26.1 7.8 65 323-392 12-113 (144)
240 TIGR00639 PurN phosphoribosylg 67.1 31 0.00068 29.6 7.6 73 75-158 1-87 (190)
241 PF02635 DrsE: DsrE/DsrF-like 67.0 24 0.00051 27.3 6.5 40 75-114 1-44 (122)
242 TIGR01768 GGGP-family geranylg 66.9 17 0.00037 32.1 5.9 54 308-365 27-80 (223)
243 COG2120 Uncharacterized protei 66.3 47 0.001 29.7 8.9 42 71-114 7-48 (237)
244 COG2910 Putative NADH-flavin r 66.0 12 0.00026 31.7 4.5 34 75-114 1-34 (211)
245 COG0512 PabA Anthranilate/para 65.4 12 0.00027 31.8 4.6 34 74-113 1-34 (191)
246 COG1519 KdtA 3-deoxy-D-manno-o 65.2 95 0.0021 30.2 10.9 113 257-389 31-153 (419)
247 PRK10360 DNA-binding transcrip 64.7 69 0.0015 27.0 9.6 66 357-425 48-117 (196)
248 COG0223 Fmt Methionyl-tRNA for 64.3 27 0.00058 32.5 7.0 78 74-158 1-87 (307)
249 PRK06756 flavodoxin; Provision 63.8 16 0.00034 29.9 5.1 37 75-112 2-38 (148)
250 PRK13530 arsenate reductase; P 63.7 27 0.00058 28.0 6.2 80 72-158 1-82 (133)
251 PRK07200 aspartate/ornithine c 63.4 66 0.0014 31.3 9.7 84 73-158 186-270 (395)
252 cd01080 NAD_bind_m-THF_DH_Cycl 62.8 92 0.002 26.2 10.1 53 306-365 42-96 (168)
253 COG1703 ArgK Putative periplas 62.4 41 0.00088 31.1 7.5 79 85-163 59-156 (323)
254 TIGR02069 cyanophycinase cyano 62.3 1.2E+02 0.0026 27.4 11.1 86 307-393 27-127 (250)
255 PRK13397 3-deoxy-7-phosphohept 62.2 1.2E+02 0.0026 27.3 10.8 98 280-390 23-130 (250)
256 TIGR00715 precor6x_red precorr 61.8 50 0.0011 30.0 8.2 68 75-158 1-73 (256)
257 PRK00170 azoreductase; Reviewe 61.5 17 0.00036 31.5 5.0 40 74-113 1-44 (201)
258 PLN02778 3,5-epimerase/4-reduc 61.4 30 0.00064 32.2 7.0 33 72-110 7-39 (298)
259 PRK02255 putrescine carbamoylt 61.3 64 0.0014 30.7 9.1 77 73-157 153-229 (338)
260 PF00551 Formyl_trans_N: Formy 61.1 45 0.00098 28.4 7.5 27 75-106 1-27 (181)
261 PF10093 DUF2331: Uncharacteri 61.0 1.6E+02 0.0035 28.3 18.9 106 257-388 168-288 (374)
262 PRK00048 dihydrodipicolinate r 60.8 35 0.00076 31.0 7.2 42 348-391 52-93 (257)
263 COG0062 Uncharacterized conser 60.7 58 0.0013 28.3 7.9 40 74-116 49-88 (203)
264 PRK13398 3-deoxy-7-phosphohept 60.5 1.4E+02 0.003 27.4 12.9 104 273-390 29-142 (266)
265 PF09949 DUF2183: Uncharacteri 59.8 63 0.0014 24.4 7.1 28 305-335 61-88 (100)
266 PRK01372 ddl D-alanine--D-alan 59.7 18 0.00038 33.8 5.2 41 72-112 2-44 (304)
267 PRK14805 ornithine carbamoyltr 59.7 59 0.0013 30.4 8.5 76 73-157 146-221 (302)
268 TIGR00853 pts-lac PTS system, 59.5 16 0.00035 27.3 3.9 75 311-390 7-83 (95)
269 PRK13932 stationary phase surv 59.3 21 0.00045 32.3 5.2 40 73-116 4-43 (257)
270 TIGR03012 sulf_tusD_dsrE sulfu 58.9 22 0.00047 28.3 4.8 37 76-112 1-39 (127)
271 PRK04284 ornithine carbamoyltr 58.9 63 0.0014 30.6 8.6 78 73-157 154-231 (332)
272 PF02441 Flavoprotein: Flavopr 58.8 23 0.00049 28.2 5.0 36 75-113 1-36 (129)
273 PLN00016 RNA-binding protein; 58.7 12 0.00025 36.3 3.9 40 73-114 51-90 (378)
274 PRK04175 rpl7ae 50S ribosomal 58.4 68 0.0015 25.3 7.4 77 284-377 34-111 (122)
275 cd05565 PTS_IIB_lactose PTS_II 58.4 29 0.00063 26.2 5.1 73 311-389 4-79 (99)
276 TIGR01007 eps_fam capsular exo 58.2 22 0.00047 30.9 5.2 40 74-113 16-55 (204)
277 PRK13234 nifH nitrogenase redu 58.2 20 0.00044 33.3 5.2 39 72-113 1-41 (295)
278 KOG0780 Signal recognition par 58.1 53 0.0011 31.5 7.7 80 77-160 104-193 (483)
279 PRK05583 ribosomal protein L7A 57.8 80 0.0017 24.1 7.5 78 284-379 21-98 (104)
280 TIGR00658 orni_carb_tr ornithi 57.3 75 0.0016 29.7 8.8 77 73-157 147-223 (304)
281 PRK06718 precorrin-2 dehydroge 56.8 63 0.0014 28.1 7.8 71 72-158 8-78 (202)
282 COG4635 HemG Flavodoxin [Energ 56.8 22 0.00048 29.2 4.4 35 75-111 1-36 (175)
283 PRK03515 ornithine carbamoyltr 56.6 70 0.0015 30.4 8.5 79 73-158 155-233 (336)
284 PRK09271 flavodoxin; Provision 56.6 25 0.00054 29.2 5.1 36 75-111 1-36 (160)
285 PF01408 GFO_IDH_MocA: Oxidore 56.6 76 0.0016 24.4 7.7 68 307-389 24-93 (120)
286 TIGR00288 conserved hypothetic 56.2 86 0.0019 26.0 7.9 66 283-363 89-155 (160)
287 COG0673 MviM Predicted dehydro 55.7 83 0.0018 29.7 9.3 69 307-389 27-98 (342)
288 PF04127 DFP: DNA / pantothena 55.3 74 0.0016 27.2 7.7 24 91-114 30-53 (185)
289 PF00308 Bac_DnaA: Bacterial d 55.2 1.5E+02 0.0032 26.1 10.5 111 348-462 89-213 (219)
290 PF10087 DUF2325: Uncharacteri 55.1 45 0.00097 24.9 5.8 75 87-182 6-80 (97)
291 PF04321 RmlD_sub_bind: RmlD s 54.8 15 0.00033 34.0 3.8 31 75-111 1-31 (286)
292 PF12273 RCR: Chitin synthesis 54.4 8.6 0.00019 30.7 1.8 12 16-27 1-12 (130)
293 cd05564 PTS_IIB_chitobiose_lic 54.2 27 0.00058 26.1 4.4 74 311-389 3-78 (96)
294 PF14118 YfzA: YfzA-like prote 54.0 26 0.00057 25.7 3.9 33 1-37 1-33 (94)
295 PRK10494 hypothetical protein; 53.9 1.1E+02 0.0023 27.9 9.0 83 306-391 119-210 (259)
296 PF13241 NAD_binding_7: Putati 53.9 87 0.0019 23.6 7.3 47 349-397 53-100 (103)
297 PRK06703 flavodoxin; Provision 53.8 28 0.00061 28.5 4.9 36 75-111 2-37 (151)
298 PRK07714 hypothetical protein; 53.8 94 0.002 23.4 7.4 76 284-377 22-97 (100)
299 PRK03767 NAD(P)H:quinone oxido 53.7 28 0.00061 30.2 5.1 37 75-113 2-40 (200)
300 PRK10569 NAD(P)H-dependent FMN 53.7 32 0.00069 29.6 5.3 39 75-113 1-40 (191)
301 TIGR03316 ygeW probable carbam 53.6 1.2E+02 0.0025 29.2 9.5 83 74-158 170-253 (357)
302 COG0062 Uncharacterized conser 53.6 1.5E+02 0.0033 25.8 11.6 118 258-392 38-161 (203)
303 TIGR02853 spore_dpaA dipicolin 53.5 98 0.0021 28.7 8.9 26 88-113 8-33 (287)
304 cd03145 GAT1_cyanophycinase Ty 53.2 1.3E+02 0.0028 26.5 9.2 85 307-392 28-127 (217)
305 PRK05920 aromatic acid decarbo 53.2 31 0.00067 30.0 5.2 39 73-114 2-40 (204)
306 TIGR01769 GGGP geranylgeranylg 53.1 62 0.0013 28.2 7.0 73 279-365 5-78 (205)
307 PF02310 B12-binding: B12 bind 52.7 89 0.0019 24.1 7.5 22 91-112 15-36 (121)
308 PRK13556 azoreductase; Provisi 52.5 47 0.001 29.0 6.4 41 74-114 1-46 (208)
309 PRK14569 D-alanyl-alanine synt 52.1 27 0.00059 32.5 5.0 40 72-111 1-42 (296)
310 PRK01713 ornithine carbamoyltr 51.6 93 0.002 29.6 8.5 78 73-157 155-232 (334)
311 cd01020 TroA_b Metal binding p 50.9 95 0.0021 28.3 8.3 88 351-443 47-136 (264)
312 TIGR00064 ftsY signal recognit 50.8 1.8E+02 0.0038 26.8 10.0 82 75-160 72-164 (272)
313 PF02525 Flavodoxin_2: Flavodo 50.7 30 0.00065 29.9 4.8 40 75-114 1-43 (199)
314 COG1553 DsrE Uncharacterized c 50.7 54 0.0012 25.7 5.5 39 75-113 1-41 (126)
315 PRK05568 flavodoxin; Provision 50.6 38 0.00082 27.3 5.2 38 75-113 2-39 (142)
316 COG0716 FldA Flavodoxins [Ener 50.6 32 0.0007 28.2 4.8 37 74-111 1-37 (151)
317 PRK06719 precorrin-2 dehydroge 50.5 32 0.0007 28.5 4.7 32 73-111 12-43 (157)
318 PF00185 OTCace: Aspartate/orn 50.4 1.3E+02 0.0027 25.0 8.3 77 271-365 3-82 (158)
319 TIGR01470 cysG_Nterm siroheme 50.4 1.1E+02 0.0025 26.6 8.3 71 72-158 7-77 (205)
320 COG2204 AtoC Response regulato 50.2 1.9E+02 0.0041 28.8 10.5 111 310-429 6-125 (464)
321 PF02844 GARS_N: Phosphoribosy 50.1 48 0.001 25.0 5.1 69 75-158 1-70 (100)
322 TIGR03010 sulf_tusC_dsrF sulfu 49.4 33 0.00071 26.7 4.4 39 76-114 1-40 (116)
323 PRK11780 isoprenoid biosynthes 49.3 48 0.001 29.2 5.9 40 75-114 2-43 (217)
324 PRK12562 ornithine carbamoyltr 48.9 1.1E+02 0.0025 28.9 8.6 79 73-158 155-233 (334)
325 COG1671 Uncharacterized protei 48.7 50 0.0011 26.9 5.2 73 323-399 12-84 (150)
326 COG1087 GalE UDP-glucose 4-epi 48.5 54 0.0012 30.4 6.0 69 75-157 1-74 (329)
327 PF07592 DDE_Tnp_ISAZ013: Rhod 48.3 1.4E+02 0.003 27.9 8.6 69 273-345 150-223 (311)
328 TIGR02622 CDP_4_6_dhtase CDP-g 48.1 42 0.00092 32.0 5.9 36 72-113 2-37 (349)
329 PRK02102 ornithine carbamoyltr 48.0 1.2E+02 0.0027 28.7 8.7 78 73-157 154-231 (331)
330 PRK04020 rps2P 30S ribosomal p 47.9 1.9E+02 0.0041 25.2 10.6 146 282-455 49-199 (204)
331 PRK04523 N-acetylornithine car 47.8 1.6E+02 0.0035 28.0 9.4 84 73-158 168-252 (335)
332 PLN03007 UDP-glucosyltransfera 47.6 37 0.00079 34.2 5.5 39 74-114 5-43 (482)
333 PRK08305 spoVFB dipicolinate s 47.3 40 0.00087 29.1 4.9 38 73-114 4-43 (196)
334 PRK12595 bifunctional 3-deoxy- 46.8 2.7E+02 0.0059 26.8 11.5 94 283-390 129-233 (360)
335 TIGR01658 EYA-cons_domain eyes 46.8 66 0.0014 28.7 6.0 54 289-357 216-269 (274)
336 COG0078 ArgF Ornithine carbamo 46.7 1.7E+02 0.0036 27.2 8.8 78 73-158 152-229 (310)
337 COG4567 Response regulator con 46.5 1.2E+02 0.0026 24.9 7.0 107 307-423 8-124 (182)
338 PRK14106 murD UDP-N-acetylmura 46.3 1.8E+02 0.0039 28.9 10.2 73 73-158 4-76 (450)
339 PRK11914 diacylglycerol kinase 46.3 55 0.0012 30.6 6.2 45 70-114 4-49 (306)
340 COG1763 MobB Molybdopterin-gua 46.2 47 0.001 27.7 5.0 39 74-113 1-39 (161)
341 PLN02285 methionyl-tRNA formyl 46.2 71 0.0015 30.3 6.8 83 73-158 5-101 (334)
342 PRK07206 hypothetical protein; 45.6 71 0.0015 31.3 7.2 35 73-114 1-35 (416)
343 TIGR01761 thiaz-red thiazoliny 45.5 1.4E+02 0.003 28.6 8.6 160 270-463 3-170 (343)
344 PRK06522 2-dehydropantoate 2-r 45.5 63 0.0014 30.0 6.5 32 75-113 1-32 (304)
345 COG4370 Uncharacterized protei 45.4 38 0.00083 31.2 4.5 162 273-459 229-408 (412)
346 PRK07313 phosphopantothenoylcy 45.2 44 0.00095 28.5 4.8 37 75-114 2-38 (182)
347 PRK04169 geranylgeranylglycery 45.2 93 0.002 27.7 7.0 75 275-365 10-85 (232)
348 PRK09273 hypothetical protein; 45.2 30 0.00066 30.0 3.8 39 75-113 1-39 (211)
349 PRK06027 purU formyltetrahydro 45.0 95 0.002 28.7 7.3 73 73-158 88-173 (286)
350 TIGR00075 hypD hydrogenase exp 44.5 1.5E+02 0.0032 28.4 8.3 84 305-390 133-226 (369)
351 PF03308 ArgK: ArgK protein; 44.4 66 0.0014 29.1 5.9 81 84-164 36-135 (266)
352 COG0482 TrmU Predicted tRNA(5- 44.4 1.7E+02 0.0036 28.0 8.8 69 72-146 1-76 (356)
353 PF02302 PTS_IIB: PTS system, 44.3 59 0.0013 23.6 4.9 54 311-365 3-56 (90)
354 PF02606 LpxK: Tetraacyldisacc 43.9 2.4E+02 0.0051 26.7 9.9 39 77-116 37-77 (326)
355 PLN02918 pyridoxine (pyridoxam 43.6 1E+02 0.0022 31.4 7.7 36 75-113 136-171 (544)
356 PF10649 DUF2478: Protein of u 43.4 38 0.00081 28.1 3.9 40 350-389 86-130 (159)
357 PF06564 YhjQ: YhjQ protein; 43.1 48 0.001 29.7 4.9 37 75-113 1-39 (243)
358 PF04413 Glycos_transf_N: 3-De 43.0 35 0.00076 29.2 3.9 100 270-389 22-125 (186)
359 PRK09004 FMN-binding protein M 42.9 48 0.001 27.0 4.6 34 76-111 3-37 (146)
360 TIGR01754 flav_RNR ribonucleot 42.9 51 0.0011 26.5 4.8 34 75-109 1-34 (140)
361 TIGR00087 surE 5'/3'-nucleotid 42.8 47 0.001 29.9 4.8 38 75-116 1-38 (244)
362 PRK00779 ornithine carbamoyltr 42.8 1.5E+02 0.0033 27.7 8.4 74 73-157 151-224 (304)
363 PRK08591 acetyl-CoA carboxylas 42.7 48 0.001 33.0 5.5 33 74-113 2-34 (451)
364 PRK00994 F420-dependent methyl 42.6 1.6E+02 0.0035 26.1 7.7 91 73-182 1-92 (277)
365 PRK05569 flavodoxin; Provision 42.5 60 0.0013 26.1 5.1 36 75-112 2-38 (141)
366 COG4565 CitB Response regulato 42.5 2.4E+02 0.0051 24.8 8.7 68 357-427 47-121 (224)
367 PF11997 DUF3492: Domain of un 42.5 33 0.00073 31.3 3.9 40 75-114 1-43 (268)
368 TIGR03677 rpl7ae 50S ribosomal 42.4 1.6E+02 0.0035 22.9 7.5 77 284-377 30-107 (117)
369 cd01019 ZnuA Zinc binding prot 42.4 1.9E+02 0.0042 26.7 9.0 89 351-443 47-162 (286)
370 PRK10834 vancomycin high tempe 42.3 1.3E+02 0.0029 26.9 7.4 80 307-389 81-168 (239)
371 PRK13982 bifunctional SbtC-lik 42.1 93 0.002 31.1 7.1 39 72-114 68-107 (475)
372 COG1091 RfbD dTDP-4-dehydrorha 42.0 42 0.00092 30.8 4.4 57 75-157 1-57 (281)
373 COG0803 LraI ABC-type metal io 42.0 1.3E+02 0.0029 28.0 8.0 89 352-443 77-174 (303)
374 TIGR01361 DAHP_synth_Bsub phos 42.0 2.7E+02 0.0059 25.3 10.3 106 275-390 29-140 (260)
375 PRK01966 ddl D-alanyl-alanine 41.8 42 0.00092 31.8 4.7 43 72-114 1-45 (333)
376 PRK07308 flavodoxin; Validated 41.8 51 0.0011 26.7 4.6 26 87-112 13-38 (146)
377 COG3563 KpsC Capsule polysacch 41.7 98 0.0021 30.6 6.8 49 335-391 204-253 (671)
378 COG1646 Predicted phosphate-bi 41.7 1.4E+02 0.0029 26.6 7.2 75 275-365 18-95 (240)
379 COG4088 Predicted nucleotide k 41.3 33 0.00071 29.8 3.3 33 80-112 5-37 (261)
380 TIGR02690 resist_ArsH arsenica 41.2 88 0.0019 27.6 6.1 42 71-112 23-65 (219)
381 PRK01355 azoreductase; Reviewe 41.1 63 0.0014 28.0 5.3 40 74-113 1-45 (199)
382 PLN02695 GDP-D-mannose-3',5'-e 41.0 59 0.0013 31.4 5.6 34 73-112 20-53 (370)
383 PF12146 Hydrolase_4: Putative 40.7 80 0.0017 22.5 4.9 37 74-112 15-51 (79)
384 PRK10427 putative PTS system f 40.6 71 0.0015 24.8 4.9 38 74-113 2-42 (114)
385 PF13614 AAA_31: AAA domain; P 40.6 71 0.0015 26.0 5.4 38 77-114 2-39 (157)
386 PF00852 Glyco_transf_10: Glyc 40.5 41 0.00089 32.2 4.4 58 374-433 246-305 (349)
387 PRK12825 fabG 3-ketoacyl-(acyl 40.4 1.1E+02 0.0023 27.0 7.0 36 72-113 4-39 (249)
388 PRK06895 putative anthranilate 40.0 44 0.00095 28.7 4.1 33 75-113 2-34 (190)
389 PRK03094 hypothetical protein; 39.8 18 0.00039 25.9 1.4 24 88-111 5-28 (80)
390 PRK05749 3-deoxy-D-manno-octul 39.5 1.8E+02 0.004 28.5 9.0 102 268-389 49-154 (425)
391 COG3181 Uncharacterized protei 39.4 3E+02 0.0064 26.0 9.5 143 275-438 127-287 (319)
392 PRK08105 flavodoxin; Provision 39.3 60 0.0013 26.6 4.6 34 76-111 3-37 (149)
393 PF00072 Response_reg: Respons 39.2 1.6E+02 0.0035 21.9 7.8 95 323-421 9-112 (112)
394 PF01297 TroA: Periplasmic sol 38.8 77 0.0017 28.7 5.8 89 351-443 42-133 (256)
395 TIGR03446 mycothiol_Mca mycoth 38.8 2.8E+02 0.0061 25.6 9.3 15 99-113 23-37 (283)
396 PF03446 NAD_binding_2: NAD bi 38.7 56 0.0012 27.2 4.5 31 74-111 1-31 (163)
397 TIGR01380 glut_syn glutathione 38.7 38 0.00083 31.8 3.8 39 75-113 1-40 (312)
398 PRK07283 hypothetical protein; 38.6 1.5E+02 0.0033 22.2 6.4 75 284-377 22-96 (98)
399 PLN02572 UDP-sulfoquinovose sy 38.1 61 0.0013 32.2 5.3 33 73-111 46-78 (442)
400 TIGR03029 EpsG chain length de 37.9 71 0.0015 29.2 5.4 39 74-112 102-140 (274)
401 PF03949 Malic_M: Malic enzyme 37.8 3.1E+02 0.0068 24.8 9.8 81 305-387 22-138 (255)
402 KOG2452 Formyltetrahydrofolate 37.6 57 0.0012 31.7 4.6 30 75-111 1-30 (881)
403 TIGR00670 asp_carb_tr aspartat 37.5 2.2E+02 0.0047 26.6 8.5 75 73-157 149-223 (301)
404 COG0684 MenG Demethylmenaquino 37.5 2.8E+02 0.0061 24.3 8.9 100 307-410 70-170 (210)
405 PRK10017 colanic acid biosynth 37.5 3E+02 0.0065 27.2 9.9 40 273-318 3-43 (426)
406 PF02585 PIG-L: GlcNAc-PI de-N 37.5 2E+02 0.0043 22.5 8.2 19 144-162 94-112 (128)
407 KOG0832 Mitochondrial/chloropl 37.4 2.9E+02 0.0064 24.4 10.7 73 335-424 160-233 (251)
408 COG2085 Predicted dinucleotide 37.3 1.3E+02 0.0029 26.2 6.5 72 74-162 1-72 (211)
409 PRK01438 murD UDP-N-acetylmura 37.2 2.4E+02 0.0052 28.3 9.5 72 73-158 15-86 (480)
410 PF00862 Sucrose_synth: Sucros 37.1 1E+02 0.0022 30.8 6.4 35 149-187 400-434 (550)
411 PF00201 UDPGT: UDP-glucoronos 37.1 18 0.00039 36.6 1.4 23 90-112 13-35 (500)
412 PLN03050 pyridoxine (pyridoxam 37.0 67 0.0015 28.9 4.9 34 75-111 61-94 (246)
413 COG0416 PlsX Fatty acid/phosph 37.0 3.4E+02 0.0075 25.6 9.4 93 269-372 138-232 (338)
414 PRK13185 chlL protochlorophyll 36.8 65 0.0014 29.4 5.0 36 75-113 2-39 (270)
415 COG1618 Predicted nucleotide k 36.7 67 0.0015 26.8 4.3 76 348-426 92-177 (179)
416 PRK12862 malic enzyme; Reviewe 36.7 4E+02 0.0088 28.7 11.2 76 305-388 190-290 (763)
417 TIGR03371 cellulose_yhjQ cellu 36.7 64 0.0014 28.8 4.9 40 75-114 1-40 (246)
418 PLN02208 glycosyltransferase f 36.7 63 0.0014 32.1 5.1 37 75-113 5-41 (442)
419 PRK13931 stationary phase surv 36.7 71 0.0015 29.0 5.0 39 75-116 1-42 (261)
420 TIGR02689 ars_reduc_gluta arse 36.5 1.3E+02 0.0027 23.8 6.0 77 75-158 1-79 (126)
421 PRK13933 stationary phase surv 36.5 68 0.0015 29.0 4.8 38 75-116 1-38 (253)
422 PRK13011 formyltetrahydrofolat 36.4 1.4E+02 0.0031 27.6 7.1 73 73-158 88-173 (286)
423 CHL00072 chlL photochlorophyll 36.4 60 0.0013 30.1 4.7 35 75-113 1-37 (290)
424 cd02040 NifH NifH gene encodes 36.4 59 0.0013 29.6 4.7 29 86-114 9-39 (270)
425 PF03807 F420_oxidored: NADP o 36.3 93 0.002 22.8 5.0 63 88-160 6-71 (96)
426 PRK13302 putative L-aspartate 36.2 1.5E+02 0.0033 27.2 7.2 71 307-391 30-100 (271)
427 PF00389 2-Hacid_dh: D-isomer 36.2 2.2E+02 0.0047 22.5 8.4 53 340-396 20-74 (133)
428 cd01018 ZntC Metal binding pro 36.1 1.5E+02 0.0033 27.0 7.3 88 351-443 46-153 (266)
429 PRK10037 cell division protein 36.1 65 0.0014 29.0 4.8 28 86-113 10-39 (250)
430 PF01884 PcrB: PcrB family; I 35.8 1.6E+02 0.0036 26.1 7.0 73 275-365 10-84 (230)
431 PRK08462 biotin carboxylase; V 35.6 77 0.0017 31.5 5.7 35 74-115 4-38 (445)
432 PRK00045 hemA glutamyl-tRNA re 35.4 4.5E+02 0.0097 25.9 13.3 74 310-396 208-285 (423)
433 CHL00175 minD septum-site dete 35.4 80 0.0017 29.0 5.4 39 75-113 15-53 (281)
434 PRK05562 precorrin-2 dehydroge 35.3 2.9E+02 0.0062 24.5 8.4 70 74-159 25-94 (223)
435 PRK08673 3-deoxy-7-phosphohept 35.3 4E+02 0.0087 25.3 10.1 98 275-390 97-208 (335)
436 COG4327 Predicted membrane pro 35.3 43 0.00093 24.5 2.6 22 16-37 19-41 (101)
437 TIGR00655 PurU formyltetrahydr 35.3 2.2E+02 0.0048 26.2 8.1 73 73-158 83-168 (280)
438 PLN00198 anthocyanidin reducta 35.3 81 0.0018 29.8 5.6 37 71-113 6-42 (338)
439 PLN00414 glycosyltransferase f 35.2 83 0.0018 31.3 5.7 38 74-113 4-41 (446)
440 PRK06395 phosphoribosylamine-- 35.2 67 0.0015 31.8 5.1 73 73-158 1-73 (435)
441 PRK05579 bifunctional phosphop 35.1 70 0.0015 31.2 5.1 40 72-114 4-43 (399)
442 PRK07178 pyruvate carboxylase 35.1 65 0.0014 32.4 5.0 35 74-115 2-36 (472)
443 PLN02928 oxidoreductase family 35.0 3.3E+02 0.0071 26.0 9.5 43 348-392 218-265 (347)
444 PRK13982 bifunctional SbtC-lik 35.0 2.5E+02 0.0054 28.2 8.8 42 72-113 254-305 (475)
445 PF10740 DUF2529: Protein of u 34.9 81 0.0018 26.4 4.6 34 74-111 82-115 (172)
446 PF11238 DUF3039: Protein of u 34.9 31 0.00067 22.8 1.7 16 373-388 15-30 (58)
447 PRK04155 chaperone protein Hch 34.8 1.8E+02 0.0039 26.9 7.4 41 74-114 49-100 (287)
448 TIGR03018 pepcterm_TyrKin exop 34.8 93 0.002 27.0 5.5 40 74-113 34-74 (207)
449 PRK12745 3-ketoacyl-(acyl-carr 34.8 2.2E+02 0.0047 25.3 8.1 24 90-113 12-35 (256)
450 PRK08229 2-dehydropantoate 2-r 34.7 53 0.0012 31.2 4.2 33 73-112 1-33 (341)
451 PRK02645 ppnK inorganic polyph 34.6 72 0.0016 29.9 4.9 40 72-112 1-40 (305)
452 cd05312 NAD_bind_1_malic_enz N 34.6 3.7E+02 0.0081 24.8 11.3 38 349-387 96-137 (279)
453 PRK09620 hypothetical protein; 34.5 73 0.0016 28.4 4.7 22 91-112 30-51 (229)
454 PF08886 GshA: Glutamate-cyste 34.5 2.2E+02 0.0048 27.3 7.8 84 74-163 77-165 (404)
455 TIGR01426 MGT glycosyltransfer 34.4 48 0.001 32.2 3.9 23 90-112 9-31 (392)
456 COG0111 SerA Phosphoglycerate 34.3 4.1E+02 0.0088 25.1 10.2 76 308-392 142-236 (324)
457 PRK13181 hisH imidazole glycer 34.3 1.2E+02 0.0026 26.1 6.0 62 324-391 11-81 (199)
458 PRK11104 hemG protoporphyrinog 34.2 71 0.0015 27.1 4.4 34 75-111 1-35 (177)
459 TIGR00725 conserved hypothetic 34.0 74 0.0016 26.4 4.4 36 74-111 1-36 (159)
460 PF02254 TrkA_N: TrkA-N domain 34.0 1.7E+02 0.0037 22.3 6.4 64 88-160 5-72 (116)
461 KOG2884 26S proteasome regulat 34.0 3.3E+02 0.0071 23.9 10.6 110 309-431 108-234 (259)
462 PRK05993 short chain dehydroge 33.8 69 0.0015 29.2 4.7 24 90-113 14-37 (277)
463 COG2894 MinD Septum formation 33.6 1.8E+02 0.0038 25.8 6.5 38 76-115 3-42 (272)
464 PRK06249 2-dehydropantoate 2-r 33.5 72 0.0016 29.9 4.8 35 72-113 3-37 (313)
465 COG1927 Mtd Coenzyme F420-depe 33.4 3.2E+02 0.007 23.7 12.4 107 273-410 7-118 (277)
466 smart00481 POLIIIAc DNA polyme 33.2 91 0.002 21.1 4.1 35 80-114 4-38 (67)
467 PRK14494 putative molybdopteri 33.2 90 0.0019 27.8 5.0 37 75-112 1-37 (229)
468 PRK10446 ribosomal protein S6 33.1 70 0.0015 29.8 4.6 34 75-112 1-34 (300)
469 COG1090 Predicted nucleoside-d 33.1 80 0.0017 28.9 4.6 30 87-116 5-34 (297)
470 KOG2648 Diphthamide biosynthes 33.1 1.7E+02 0.0037 28.7 7.1 59 307-365 266-326 (453)
471 COG0655 WrbA Multimeric flavod 33.0 1E+02 0.0023 26.8 5.4 40 75-114 1-41 (207)
472 PRK06029 3-octaprenyl-4-hydrox 32.9 95 0.0021 26.6 5.0 36 75-114 2-39 (185)
473 PRK05447 1-deoxy-D-xylulose 5- 32.9 3E+02 0.0066 26.7 8.7 86 280-389 34-122 (385)
474 PRK07232 bifunctional malic en 32.9 5.7E+02 0.012 27.5 11.4 76 305-388 182-282 (752)
475 PLN02712 arogenate dehydrogena 32.8 2.1E+02 0.0045 30.3 8.3 35 71-112 49-83 (667)
476 cd01965 Nitrogenase_MoFe_beta_ 32.8 4.9E+02 0.011 25.7 16.6 99 282-389 132-252 (428)
477 PLN02657 3,8-divinyl protochlo 32.8 1.4E+02 0.0029 29.2 6.7 37 71-113 57-93 (390)
478 PRK09288 purT phosphoribosylgl 32.8 1.1E+02 0.0023 29.8 6.0 36 73-115 11-46 (395)
479 TIGR01279 DPOR_bchN light-inde 32.7 2.3E+02 0.0049 27.9 8.2 76 73-158 273-351 (407)
480 PRK13934 stationary phase surv 32.7 95 0.0021 28.3 5.1 38 75-116 1-38 (266)
481 CHL00194 ycf39 Ycf39; Provisio 32.6 68 0.0015 30.1 4.5 33 75-113 1-33 (317)
482 cd01017 AdcA Metal binding pro 32.5 1.9E+02 0.0042 26.6 7.4 89 351-443 47-154 (282)
483 TIGR01281 DPOR_bchL light-inde 32.3 79 0.0017 28.8 4.8 35 75-113 1-37 (268)
484 PRK12861 malic enzyme; Reviewe 32.2 5E+02 0.011 28.0 10.8 76 305-388 186-286 (764)
485 PRK06180 short chain dehydroge 32.2 74 0.0016 29.0 4.6 23 90-112 14-36 (277)
486 PRK10481 hypothetical protein; 32.0 2.9E+02 0.0062 24.5 7.9 90 280-390 114-214 (224)
487 PRK07236 hypothetical protein; 31.9 65 0.0014 31.2 4.4 36 71-113 3-38 (386)
488 PRK11889 flhF flagellar biosyn 31.8 4.7E+02 0.01 25.8 9.7 61 75-139 242-302 (436)
489 TIGR00853 pts-lac PTS system, 31.6 1.3E+02 0.0029 22.3 5.0 38 73-112 2-39 (95)
490 KOG0853 Glycosyltransferase [C 31.5 67 0.0014 32.1 4.2 43 73-115 33-84 (495)
491 COG0489 Mrp ATPases involved i 31.5 1E+02 0.0023 28.1 5.3 40 74-113 56-95 (265)
492 TIGR01286 nifK nitrogenase mol 31.4 5.8E+02 0.013 26.0 15.8 118 216-341 129-252 (515)
493 PF13788 DUF4180: Domain of un 31.4 1.2E+02 0.0027 23.5 4.8 41 307-349 68-108 (113)
494 PRK13789 phosphoribosylamine-- 31.4 1E+02 0.0022 30.5 5.6 74 73-158 3-76 (426)
495 PRK13230 nitrogenase reductase 31.4 85 0.0018 28.8 4.8 28 86-113 9-38 (279)
496 PRK13886 conjugal transfer pro 31.3 1.7E+02 0.0037 26.3 6.4 39 75-113 2-40 (241)
497 cd01836 FeeA_FeeB_like SGNH_hy 31.3 3.1E+02 0.0068 23.0 8.2 44 270-316 69-114 (191)
498 PRK05246 glutathione synthetas 31.1 60 0.0013 30.6 3.8 41 74-114 1-42 (316)
499 cd02032 Bchl_like This family 31.1 83 0.0018 28.6 4.7 35 75-113 1-37 (267)
500 PRK05380 pyrG CTP synthetase; 31.0 5.9E+02 0.013 26.0 21.8 157 212-390 214-380 (533)
No 1
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=5.2e-45 Score=353.96 Aligned_cols=355 Identities=19% Similarity=0.227 Sum_probs=271.6
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC-----------hh
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG-----------QE 143 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 143 (470)
.||+++.+.+..||+++++.+|++.|.+.||++.+++..+... +.......++.++.... ..
T Consensus 2 ~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 74 (374)
T TIGR03088 2 PLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVSA-------FRKRIQRPDVAFYALHKQPGKDVAVYPQLY 74 (374)
T ss_pred ceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCCh-------hHHHHHhcCceEEEeCCCCCCChHHHHHHH
Confidence 5899999999999999999999999999999999988543221 33444455665544321 23
Q ss_pred hHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccc-----cchhh-hhc-ccccccceeeeehhhHHH
Q 012132 144 TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH-----YFKLD-YVK-HLPLVAGAMIDSHVTAEY 216 (470)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~-----~~~~~-~~~-~~~~~~~~~~~s~~~~~~ 216 (470)
.+.+..+||+||+|+............... +..+++.|..... .+... ..+ .....+.+++.|....+.
T Consensus 75 ~~l~~~~~Divh~~~~~~~~~~~~~~~~~~----~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vs~~~~~~ 150 (374)
T TIGR03088 75 RLLRQLRPDIVHTRNLAALEAQLPAALAGV----PARIHGEHGRDVFDLDGSNWKYRWLRRLYRPLIHHYVAVSRDLEDW 150 (374)
T ss_pred HHHHHhCCCEEEEcchhHHHHHHHHHhcCC----CeEEEeecCcccccchhhHHHHHHHHHHHHhcCCeEEEeCHHHHHH
Confidence 445678999999997543221111111111 1223334432110 01111 111 123456677777777665
Q ss_pred HHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHH
Q 012132 217 WKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESL 296 (470)
Q Consensus 217 ~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~ 296 (470)
+.+ .++++..++.+||||+|.+.|.+.... +...+++...++++++++++||+.+.||++.+++|+.++.
T Consensus 151 ~~~----~~~~~~~~~~vi~ngvd~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~ 220 (374)
T TIGR03088 151 LRG----PVKVPPAKIHQIYNGVDTERFHPSRGD------RSPILPPDFFADESVVVGTVGRLQAVKDQPTLVRAFALLV 220 (374)
T ss_pred HHH----hcCCChhhEEEeccCccccccCCCccc------hhhhhHhhcCCCCCeEEEEEecCCcccCHHHHHHHHHHHH
Confidence 543 567778889999999999887654321 1222333344567899999999999999999999999886
Q ss_pred HHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHH
Q 012132 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITI 376 (470)
Q Consensus 297 ~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~l 376 (470)
+...+ ..++++|+++|+| +..+.+++.++++++.+++.|+|+.+++.++|+.||++|+||. .||||++++
T Consensus 221 ~~~~~---~~~~~~l~i~G~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~pS~--~Eg~~~~~l 290 (374)
T TIGR03088 221 RQLPE---GAERLRLVIVGDG-----PARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVLPSL--AEGISNTIL 290 (374)
T ss_pred HhCcc---cccceEEEEecCC-----chHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEEEeccc--cccCchHHH
Confidence 63321 1247999999998 5678899999999999999999999999999999999999999 999999999
Q ss_pred HHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Q 012132 377 EAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAV 456 (470)
Q Consensus 377 EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~ 456 (470)
|||+||+|||+|+.||.+|++.++.+|++++++| +++++++|.+++++++.+..+++++++++.++|||+.+++++.+
T Consensus 291 EAma~G~Pvv~s~~~g~~e~i~~~~~g~~~~~~d--~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~ 368 (374)
T TIGR03088 291 EAMASGLPVIATAVGGNPELVQHGVTGALVPPGD--AVALARALQPYVSDPAARRAHGAAGRARAEQQFSINAMVAAYAG 368 (374)
T ss_pred HHHHcCCCEEEcCCCCcHHHhcCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999999999999999999988 99999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 012132 457 VLKEVL 462 (470)
Q Consensus 457 ~~~~~l 462 (470)
+|++++
T Consensus 369 ~y~~~~ 374 (374)
T TIGR03088 369 LYDQLL 374 (374)
T ss_pred HHHHhC
Confidence 998863
No 2
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=8.4e-44 Score=353.39 Aligned_cols=352 Identities=17% Similarity=0.177 Sum_probs=262.2
Q ss_pred ccccEEEEEeeccC---CCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhh-hhhhcceee-----Ee---c
Q 012132 72 MKSKLVLLVSHELS---LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEH-KMWDRGVQV-----IS---A 139 (470)
Q Consensus 72 ~~~~kIl~v~~~~~---~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~---~ 139 (470)
+++|||+++....+ .||++.++.+++++|.++||+|++++......... ..... ......... .. .
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~~~--~g~~v~~~~~~~~~~~~~~~~~~~~~ 133 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQEF--HGAKVIGSWSFPCPFYQKVPLSLALS 133 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCccc--cCceeeccCCcCCccCCCceeeccCC
Confidence 67899999976432 37889999999999999999999999654321100 00000 000000000 00 0
Q ss_pred CChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchh---------h---hhccccccccee
Q 012132 140 KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL---------D---YVKHLPLVAGAM 207 (470)
Q Consensus 140 ~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~---------~---~~~~~~~~~~~~ 207 (470)
.....+.+..+||+||+|++....+........ ...|++.+.|+....+... . ........+.++
T Consensus 134 ~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~---~~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~ii 210 (465)
T PLN02871 134 PRIISEVARFKPDLIHASSPGIMVFGALFYAKL---LCVPLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLTL 210 (465)
T ss_pred HHHHHHHHhCCCCEEEECCCchhHHHHHHHHHH---hCCCEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEEE
Confidence 123345567899999999865433333222221 1257778888653222110 0 112234567777
Q ss_pred eeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcC-CCCCCeEEEEEeecccCCCHH
Q 012132 208 IDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLG-VRNEDLLFAIINSVSRGKGQD 286 (470)
Q Consensus 208 ~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~i~~vGrl~~~Kg~~ 286 (470)
+.|....+.+.+ ....+.+++.+||||+|.+.|.+.... ...+.++. .++++++|+++||+.+.||++
T Consensus 211 ~~S~~~~~~l~~----~~~~~~~kv~vi~nGvd~~~f~p~~~~-------~~~~~~~~~~~~~~~~i~~vGrl~~~K~~~ 279 (465)
T PLN02871 211 VTSPALGKELEA----AGVTAANRIRVWNKGVDSESFHPRFRS-------EEMRARLSGGEPEKPLIVYVGRLGAEKNLD 279 (465)
T ss_pred ECCHHHHHHHHH----cCCCCcCeEEEeCCccCccccCCcccc-------HHHHHHhcCCCCCCeEEEEeCCCchhhhHH
Confidence 777777665543 333456789999999999988654321 23444443 234678899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEcc
Q 012132 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNS 364 (470)
Q Consensus 287 ~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS 364 (470)
.++++++++ ++++|+|+|+| ++.+++++++++ .+|+|+|++ +++.++|+.||++|+||
T Consensus 280 ~li~a~~~~-----------~~~~l~ivG~G-----~~~~~l~~~~~~----~~V~f~G~v~~~ev~~~~~~aDv~V~pS 339 (465)
T PLN02871 280 FLKRVMERL-----------PGARLAFVGDG-----PYREELEKMFAG----TPTVFTGMLQGDELSQAYASGDVFVMPS 339 (465)
T ss_pred HHHHHHHhC-----------CCcEEEEEeCC-----hHHHHHHHHhcc----CCeEEeccCCHHHHHHHHHHCCEEEECC
Confidence 999998755 78999999998 678888888774 379999987 78999999999999999
Q ss_pred CCcccccchHHHHHHhcCCCEEecCCCCcceeeec---CceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 012132 365 QAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN---GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERV 441 (470)
Q Consensus 365 ~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~---~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 441 (470)
. .|+||++++|||+||+|||+++.||+.|++.+ +++|++++++| +++++++|.++++|++.+++|++++++.+
T Consensus 340 ~--~E~~g~~vlEAmA~G~PVI~s~~gg~~eiv~~~~~~~~G~lv~~~d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 415 (465)
T PLN02871 340 E--SETLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEGKTGFLYTPGD--VDDCVEKLETLLADPELRERMGAAAREEV 415 (465)
T ss_pred c--ccccCcHHHHHHHcCCCEEEcCCCCcHhhhhcCCCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999998 99999999998 99999999999999999999999999988
Q ss_pred HHHcChhHHHHHHHH-HHHHHHHh
Q 012132 442 KEIFQEHHMAERIAV-VLKEVLKK 464 (470)
Q Consensus 442 ~~~fs~~~~~~~~~~-~~~~~l~~ 464 (470)
+ +|+|+.+++++++ +|++++..
T Consensus 416 ~-~fsw~~~a~~l~~~~Y~~~~~~ 438 (465)
T PLN02871 416 E-KWDWRAATRKLRNEQYSAAIWF 438 (465)
T ss_pred H-hCCHHHHHHHHHHHHHHHHHHH
Confidence 4 6999999999998 79998764
No 3
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=1.2e-43 Score=350.04 Aligned_cols=370 Identities=19% Similarity=0.202 Sum_probs=270.0
Q ss_pred ccccEEEEEeeccCC----CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHH-----hhhhhh---------hhcc
Q 012132 72 MKSKLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY-----SLEHKM---------WDRG 133 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~----~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~-----~~~~~~---------~~~~ 133 (470)
|++|||+|++.+..| ||-.-++..|.++|+++||+|.|+.+..+........ .+.... ...|
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAGIEDAEQVHSFPDLFGGPARLLAARAGG 80 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhhhcCceEEEEEeeeCCceEEEEEEEeCC
Confidence 577999999999655 6669999999999999999999999765443211000 000000 0012
Q ss_pred eeeEec--------C---------------Chh---------hHH----hhcCCcEEEEcccchhhhHHHHhhhcCCccc
Q 012132 134 VQVISA--------K---------------GQE---------TIN----TALKADLIVLNTAVAGKWLDAVLKEDVPRVL 177 (470)
Q Consensus 134 ~~~~~~--------~---------------~~~---------~~~----~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~ 177 (470)
+.++-. . ..+ .+. ...+|||||+|+..++.....+.... ...
T Consensus 81 v~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~l~~~~l~~~~--~~~ 158 (485)
T PRK14099 81 LDLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAGLAPAYLHYSG--RPA 158 (485)
T ss_pred ceEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHHHHHHHHHhCC--CCC
Confidence 222110 0 000 001 13689999999966554433222111 122
Q ss_pred cceeeEEeeecccc-chh------------------h-------hhcccccccceeeeehhhHHHHHHhh-----hhhhc
Q 012132 178 PNVLWWIHEMRGHY-FKL------------------D-------YVKHLPLVAGAMIDSHVTAEYWKNRT-----RERLR 226 (470)
Q Consensus 178 ~~~~~~~h~~~~~~-~~~------------------~-------~~~~~~~~~~~~~~s~~~~~~~~~~~-----~~~~~ 226 (470)
.+.+.|+|+..... +.. . ....+...+.++++|...++.+.+.. ...++
T Consensus 159 ~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~~ad~vitVS~~~a~ei~~~~~g~gl~~~l~ 238 (485)
T PRK14099 159 PGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQLADRITTVSPTYALEIQGPEAGMGLDGLLR 238 (485)
T ss_pred CCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHHhcCeeeecChhHHHHHhcccCCcChHHHHH
Confidence 57899999864211 100 0 12224566778888888877665321 01122
Q ss_pred cCCCceEEEecCCchhhhhHhhhHH-----------HHHHHHHHHHHHcCCCC--CCeEEEEEeecccCCCHHHHHHHHH
Q 012132 227 IKMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQDLFLHSFY 293 (470)
Q Consensus 227 ~~~~~i~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~--~~~~i~~vGrl~~~Kg~~~ll~a~~ 293 (470)
.+..++.+|+||+|.+.|.|..+.. .+...+..+|+++|++. +.++++++||+.++||++.+++|+.
T Consensus 239 ~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~A~~ 318 (485)
T PRK14099 239 QRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVISRLSWQKGLDLLLEALP 318 (485)
T ss_pred hhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccCCcEEEEEecCCccccHHHHHHHHH
Confidence 3567899999999999988764421 12233567899999974 4688999999999999999999999
Q ss_pred HHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcE-EEecccCCHHHHH-HhcCEEEEccCCccccc
Q 012132 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV-HFVNKTLTVAPYL-AAIDVLVQNSQAWGECF 371 (470)
Q Consensus 294 ~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V-~~~g~~~~~~~~~-~~aDv~v~pS~~~~E~~ 371 (470)
.+.+ .+++|+|+|+|.+ ++.+.+++++++++ +++ .++|+.+++..+| +.||+|++||. .|+|
T Consensus 319 ~l~~---------~~~~lvivG~G~~---~~~~~l~~l~~~~~--~~v~~~~G~~~~l~~~~~a~aDifv~PS~--~E~f 382 (485)
T PRK14099 319 TLLG---------EGAQLALLGSGDA---ELEARFRAAAQAYP--GQIGVVIGYDEALAHLIQAGADALLVPSR--FEPC 382 (485)
T ss_pred HHHh---------cCcEEEEEecCCH---HHHHHHHHHHHHCC--CCEEEEeCCCHHHHHHHHhcCCEEEECCc--cCCC
Confidence 8854 5789999999841 36788888888765 445 7999988999987 57999999999 9999
Q ss_pred chHHHHHHhcCCCEEecCCCCcceeeecC---------ceeeeecCCCCChHHHHHHHHH---HHhCHHHHHHHHHHHHH
Q 012132 372 GRITIEAMAFQLPVLGTAAGGTTEIVVNG---------TTGLLHPVGKEGITPLAKNIVK---LATHVERRLTMGKRGYE 439 (470)
Q Consensus 372 g~~~lEAma~G~PvI~s~~~g~~e~v~~~---------~~G~l~~~~d~~~~~la~~i~~---ll~~~~~~~~~~~~a~~ 439 (470)
|++++|||+||+|+|++++||++|+|.++ .+|+++++.| +++|+++|.+ +++|++.++++++++++
T Consensus 383 Gl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d--~~~La~ai~~a~~l~~d~~~~~~l~~~~~~ 460 (485)
T PRK14099 383 GLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVT--ADALAAALRKTAALFADPVAWRRLQRNGMT 460 (485)
T ss_pred cHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCCC--HHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 99999999999999999999999999775 6899999999 9999999997 67799999999998863
Q ss_pred HHHHHcChhHHHHHHHHHHHHHHHh
Q 012132 440 RVKEIFQEHHMAERIAVVLKEVLKK 464 (470)
Q Consensus 440 ~~~~~fs~~~~~~~~~~~~~~~l~~ 464 (470)
+.|||++++++|+++|++++..
T Consensus 461 ---~~fSw~~~a~~y~~lY~~l~~~ 482 (485)
T PRK14099 461 ---TDVSWRNPAQHYAALYRSLVAE 482 (485)
T ss_pred ---hcCChHHHHHHHHHHHHHHHhh
Confidence 6799999999999999999864
No 4
>PLN02316 synthase/transferase
Probab=100.00 E-value=1.7e-43 Score=362.72 Aligned_cols=370 Identities=15% Similarity=0.115 Sum_probs=273.0
Q ss_pred ccccEEEEEeeccCC----CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhh--h------------hhhcc
Q 012132 72 MKSKLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEH--K------------MWDRG 133 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~----~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~--~------------~~~~~ 133 (470)
..+|||++++.++.| ||..-++..|+++|+++||+|.|+++..+.........+.. . ....|
T Consensus 585 ~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G 664 (1036)
T PLN02316 585 EPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWFGKVEG 664 (1036)
T ss_pred CCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEEEEECC
Confidence 345999999998765 66699999999999999999999997665321110000000 0 00113
Q ss_pred eeeEecCCh--------------------------hhHH--hhcCCcEEEEcccchhhhHHHHhhhc--CCccccceeeE
Q 012132 134 VQVISAKGQ--------------------------ETIN--TALKADLIVLNTAVAGKWLDAVLKED--VPRVLPNVLWW 183 (470)
Q Consensus 134 ~~~~~~~~~--------------------------~~~~--~~~~~DiV~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 183 (470)
+.++..... ..+. ...+|||||+|+...+.....+.... ......+++.+
T Consensus 665 V~vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talva~llk~~~~~~~~~~~p~V~T 744 (1036)
T PLN02316 665 LSVYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAWLFKDHYAHYGLSKARVVFT 744 (1036)
T ss_pred cEEEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHHhhhhhccCCCCEEEE
Confidence 333221110 0111 12589999999865544332221110 01122588999
Q ss_pred EeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhhcc--CCCceEEEecCCchhhhhHhhhHH----------
Q 012132 184 IHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRI--KMPDTYVVHLGNSKELMEVAEDNV---------- 251 (470)
Q Consensus 184 ~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~i~vi~ngvd~~~~~~~~~~~---------- 251 (470)
+|+... ........+...+.++++|...+..+.. ...+ ...++.+|+||||.+.|.|..+..
T Consensus 745 iHnl~~--~~n~lk~~l~~AD~ViTVS~tya~EI~~----~~~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~ 818 (1036)
T PLN02316 745 IHNLEF--GANHIGKAMAYADKATTVSPTYSREVSG----NSAIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENV 818 (1036)
T ss_pred eCCccc--chhHHHHHHHHCCEEEeCCHHHHHHHHh----ccCcccccCCEEEEECCccccccCCcccccccccCCchhh
Confidence 997532 1122334456778889899888766553 2222 347899999999999887653311
Q ss_pred --HHHHHHHHHHHHcCCCC-CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHH
Q 012132 252 --AKRVLREHVRESLGVRN-EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESEL 328 (470)
Q Consensus 252 --~~~~~~~~~r~~~~~~~-~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l 328 (470)
.+...+..+++++|++. +.++|+++||+.++||++.|++|+.++.+ ++++|+|+|+|+. +++.+.+
T Consensus 819 ~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~---------~~~qlVIvG~Gpd--~~~e~~l 887 (1036)
T PLN02316 819 VEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE---------RNGQVVLLGSAPD--PRIQNDF 887 (1036)
T ss_pred hhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh---------cCcEEEEEeCCCC--HHHHHHH
Confidence 11233567899999984 67899999999999999999999998854 5799999999843 2467889
Q ss_pred HHHHHhcCC--CCcEEEecccCCH--HHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecC----
Q 012132 329 RNYVMQKKI--QDRVHFVNKTLTV--APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNG---- 400 (470)
Q Consensus 329 ~~~~~~~~l--~~~V~~~g~~~~~--~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~---- 400 (470)
+++++++++ +++|.|.|..++. ..+|++||+||+||+ .|+||++.+|||+||+|+|++++||++|+|.++
T Consensus 888 ~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~--~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~ 965 (1036)
T PLN02316 888 VNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSI--FEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDK 965 (1036)
T ss_pred HHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCc--ccCccHHHHHHHHcCCCeEEEcCCCcHhhcccccccc
Confidence 999998876 5789998765443 379999999999999 999999999999999999999999999999874
Q ss_pred ---------ceeeeecCCCCChHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Q 012132 401 ---------TTGLLHPVGKEGITPLAKNIVKLATH-VERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 462 (470)
Q Consensus 401 ---------~~G~l~~~~d~~~~~la~~i~~ll~~-~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l 462 (470)
.+|+++++.| +++|+++|.+++.+ ++.+..+++.+++.+.+.|||+.++++|+++|+++.
T Consensus 966 ~~~~~~g~~~tGflf~~~d--~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~a~ 1035 (1036)
T PLN02316 966 ERAQAQGLEPNGFSFDGAD--AAGVDYALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHSAR 1035 (1036)
T ss_pred ccccccccCCceEEeCCCC--HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence 6899999999 99999999999986 455677788888888889999999999999999875
No 5
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=2e-43 Score=344.71 Aligned_cols=345 Identities=18% Similarity=0.158 Sum_probs=261.9
Q ss_pred EEEEEeeccCC--CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC-------------
Q 012132 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------------- 140 (470)
Q Consensus 76 kIl~v~~~~~~--~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 140 (470)
||+++++.+.| ||.++++.+++++|.++||+|+|++...+.... ......++.++..+
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~-------~~~~~~~i~v~~~p~~~~~~~~~~~~~ 73 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVG-------IRYLTNGLKVYYLPFVVFYNQSTLPTF 73 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCC-------cccccCceeEEEecceeccCCccccch
Confidence 69999997765 666999999999999999999999965332110 01111233332211
Q ss_pred -----ChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc------chhhhhcccccccceeee
Q 012132 141 -----GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY------FKLDYVKHLPLVAGAMID 209 (470)
Q Consensus 141 -----~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~------~~~~~~~~~~~~~~~~~~ 209 (470)
..+......+||+||+|++............. ....|++++.|+..+.. ........+...+.+++.
T Consensus 74 ~~~~~~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~--~~~~~~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 151 (398)
T cd03796 74 FGTFPLLRNILIRERITIVHGHQAFSALAHEALLHAR--TMGLKTVFTDHSLFGFADASSIHTNKLLRFSLADVDHVICV 151 (398)
T ss_pred hhhHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHhh--hcCCcEEEEecccccccchhhHHhhHHHHHhhccCCEEEEe
Confidence 12234456899999999865443222111111 12257888999754311 111122234567778888
Q ss_pred ehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHH
Q 012132 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (470)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll 289 (470)
|....+.... ..+++.+++.+||||+|.+.|.+.... .++++++++++||+.+.||++.++
T Consensus 152 s~~~~~~~~~----~~~~~~~k~~vi~ngvd~~~f~~~~~~---------------~~~~~~~i~~~grl~~~Kg~~~li 212 (398)
T cd03796 152 SHTSKENTVL----RASLDPERVSVIPNAVDSSDFTPDPSK---------------RDNDKITIVVISRLVYRKGIDLLV 212 (398)
T ss_pred cHhHhhHHHH----HhCCChhhEEEEcCccCHHHcCCCccc---------------CCCCceEEEEEeccchhcCHHHHH
Confidence 8777654322 345677889999999999887654321 235778999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCc
Q 012132 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAW 367 (470)
Q Consensus 290 ~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~ 367 (470)
+|+..+.+ +.++++|+|+|+| +..+.++++++++++.++|+|+|+. +++..+|+.+|++++||.
T Consensus 213 ~a~~~l~~-------~~~~~~l~i~G~g-----~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~-- 278 (398)
T cd03796 213 GIIPEICK-------KHPNVRFIIGGDG-----PKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSL-- 278 (398)
T ss_pred HHHHHHHh-------hCCCEEEEEEeCC-----chHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCCh--
Confidence 99998765 4589999999998 5778899999999999999999985 789999999999999999
Q ss_pred ccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCh
Q 012132 368 GECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQE 447 (470)
Q Consensus 368 ~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~ 447 (470)
.|+||++++|||+||+|||+++.||.+|++.++ .+++.+ .| .++++++|.+++++......+++++++++.++|||
T Consensus 279 ~E~~g~~~~EAma~G~PVI~s~~gg~~e~i~~~-~~~~~~-~~--~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs~ 354 (398)
T cd03796 279 TEAFCIAIVEAASCGLLVVSTRVGGIPEVLPPD-MILLAE-PD--VESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSW 354 (398)
T ss_pred hhccCHHHHHHHHcCCCEEECCCCCchhheeCC-ceeecC-CC--HHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCCH
Confidence 899999999999999999999999999999765 344444 46 89999999999998776667889999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhh
Q 012132 448 HHMAERIAVVLKEVLKKSK 466 (470)
Q Consensus 448 ~~~~~~~~~~~~~~l~~~~ 466 (470)
+.+++++.++|++++....
T Consensus 355 ~~~~~~~~~~y~~l~~~~~ 373 (398)
T cd03796 355 EDVAKRTEKVYDRILQTPN 373 (398)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 9999999999999986543
No 6
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=5.4e-43 Score=352.36 Aligned_cols=377 Identities=14% Similarity=0.111 Sum_probs=277.2
Q ss_pred ccccEEEEEeeccCC----CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhh-----------hhh-------
Q 012132 72 MKSKLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLE-----------HKM------- 129 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~----~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~-----------~~~------- 129 (470)
.+.|||+|++.+..| ||-+-++..|.++|+++||+|.|+++..+.........+. ...
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ 558 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWT 558 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEE
Confidence 356899999999765 6669999999999999999999999876543211110000 000
Q ss_pred -hhcceeeEecCC------------h-------h---------hHHh--hcCCcEEEEcccchhhhHHHHhhhc--CCcc
Q 012132 130 -WDRGVQVISAKG------------Q-------E---------TINT--ALKADLIVLNTAVAGKWLDAVLKED--VPRV 176 (470)
Q Consensus 130 -~~~~~~~~~~~~------------~-------~---------~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~--~~~~ 176 (470)
...|+.++.+.. . + .+.. ..+|||||+|+...+.....+.... ....
T Consensus 559 ~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~~~~ 638 (977)
T PLN02939 559 GTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGFN 638 (977)
T ss_pred EEECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHHhhccCC
Confidence 012344332210 0 0 0111 2689999999987665422222110 0112
Q ss_pred ccceeeEEeeecccc-ch----------------hhh------------hcccccccceeeeehhhHHHHHHh----hhh
Q 012132 177 LPNVLWWIHEMRGHY-FK----------------LDY------------VKHLPLVAGAMIDSHVTAEYWKNR----TRE 223 (470)
Q Consensus 177 ~~~~~~~~h~~~~~~-~~----------------~~~------------~~~~~~~~~~~~~s~~~~~~~~~~----~~~ 223 (470)
..++++++|+....- +. ... ...+...+.++++|...+..+... +..
T Consensus 639 ~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN~LK~GIv~AD~VtTVSptYA~EI~te~G~GL~~ 718 (977)
T PLN02939 639 SARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQD 718 (977)
T ss_pred CCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCchHHHHHHHHhCCeeEeeeHHHHHHHHHHhccchHH
Confidence 357899999864111 00 000 011234677888888887766542 122
Q ss_pred hhccCCCceEEEecCCchhhhhHhhhHH-----------HHHHHHHHHHHHcCCCC---CCeEEEEEeecccCCCHHHHH
Q 012132 224 RLRIKMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVRN---EDLLFAIINSVSRGKGQDLFL 289 (470)
Q Consensus 224 ~~~~~~~~i~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~---~~~~i~~vGrl~~~Kg~~~ll 289 (470)
.++....++.+|+||||.+.|.|..+.. .+...+..+++++|++. +.++|+++||+.++||++.++
T Consensus 719 ~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlLl 798 (977)
T PLN02939 719 TLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQKGVHLIR 798 (977)
T ss_pred HhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecCCcccChHHHH
Confidence 3456778999999999999998765321 12234677999999984 468999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCC--HHHHHHhcCEEEEccCCc
Q 012132 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLT--VAPYLAAIDVLVQNSQAW 367 (470)
Q Consensus 290 ~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~--~~~~~~~aDv~v~pS~~~ 367 (470)
+|+..+.+ ++++|+|+|+|+.. .+.+.++++++++++.++|.|+|..++ ...+|++||+||+||+
T Consensus 799 eA~~~Ll~---------~dvqLVIvGdGp~~--~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADIFLmPSr-- 865 (977)
T PLN02939 799 HAIYKTAE---------LGGQFVLLGSSPVP--HIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDMFIIPSM-- 865 (977)
T ss_pred HHHHHHhh---------cCCEEEEEeCCCcH--HHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCEEEECCC--
Confidence 99988754 57899999998421 356889999999999999999997644 3579999999999999
Q ss_pred ccccchHHHHHHhcCCCEEecCCCCcceeeec---------CceeeeecCCCCChHHHHHHHHHHHh----CHHHHHHHH
Q 012132 368 GECFGRITIEAMAFQLPVLGTAAGGTTEIVVN---------GTTGLLHPVGKEGITPLAKNIVKLAT----HVERRLTMG 434 (470)
Q Consensus 368 ~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~---------~~~G~l~~~~d~~~~~la~~i~~ll~----~~~~~~~~~ 434 (470)
+|+||++++|||+||+|+|++++||+.|+|.+ +.+|+++++.| +++|+++|.+++. |++.+.+|+
T Consensus 866 ~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D--~eaLa~AL~rAL~~~~~dpe~~~~L~ 943 (977)
T PLN02939 866 FEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPD--EQGLNSALERAFNYYKRKPEVWKQLV 943 (977)
T ss_pred ccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCC--HHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999999999999999999999875 57999999998 9999999998875 789999998
Q ss_pred HHHHHHHHHHcChhHHHHHHHHHHHHHHHhhh
Q 012132 435 KRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 466 (470)
Q Consensus 435 ~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~~~ 466 (470)
+++. .+.|||+.++++|+++|++++....
T Consensus 944 ~~am---~~dFSWe~~A~qYeeLY~~ll~~~~ 972 (977)
T PLN02939 944 QKDM---NIDFSWDSSASQYEELYQRAVARAR 972 (977)
T ss_pred HHHH---HhcCCHHHHHHHHHHHHHHHHHhhh
Confidence 8764 3679999999999999999987543
No 7
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=2.5e-43 Score=345.81 Aligned_cols=343 Identities=20% Similarity=0.220 Sum_probs=261.0
Q ss_pred CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC----------------------Chhh
Q 012132 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK----------------------GQET 144 (470)
Q Consensus 87 ~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~ 144 (470)
||+++++.+|+++|.++||+|+|+|......... ......|+.++... ..+.
T Consensus 20 GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (405)
T TIGR03449 20 GGMNVYILETATELARRGIEVDIFTRATRPSQPP------VVEVAPGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLRA 93 (405)
T ss_pred CCceehHHHHHHHHhhCCCEEEEEecccCCCCCC------ccccCCCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 7779999999999999999999999643321110 00012334443221 0001
Q ss_pred HHh--hcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc---------ch---hh--hhcccccccceee
Q 012132 145 INT--ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---------FK---LD--YVKHLPLVAGAMI 208 (470)
Q Consensus 145 ~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~---------~~---~~--~~~~~~~~~~~~~ 208 (470)
+.+ ..+||+||+|....+. ....+... ...|++++.|+..... .. .. ....+...+.+++
T Consensus 94 ~~~~~~~~~Diih~h~~~~~~-~~~~~~~~---~~~p~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~vi~ 169 (405)
T TIGR03449 94 EARHEPGYYDLIHSHYWLSGQ-VGWLLRDR---WGVPLVHTAHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADRLIA 169 (405)
T ss_pred HhhccCCCCCeEEechHHHHH-HHHHHHHh---cCCCEEEeccchHHHHHHhccCCCCCchHHHHHHHHHHHHhcCeEEE
Confidence 111 2479999999744332 22222221 1247888999753100 00 00 1123456677777
Q ss_pred eehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHH
Q 012132 209 DSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 288 (470)
Q Consensus 209 ~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~l 288 (470)
.|....+.+. ..++.+..++.+||||+|.+.|.+.. +...++++++++++++|+++||+.+.||++.+
T Consensus 170 ~s~~~~~~~~----~~~~~~~~ki~vi~ngvd~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~G~l~~~K~~~~l 237 (405)
T TIGR03449 170 NTDEEARDLV----RHYDADPDRIDVVAPGADLERFRPGD--------RATERARLGLPLDTKVVAFVGRIQPLKAPDVL 237 (405)
T ss_pred CCHHHHHHHH----HHcCCChhhEEEECCCcCHHHcCCCc--------HHHHHHhcCCCCCCcEEEEecCCCcccCHHHH
Confidence 7776655443 35677778899999999998886542 34467788988888999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCc--eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEcc
Q 012132 289 LHSFYESLELIKEKKLEVPS--VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNS 364 (470)
Q Consensus 289 l~a~~~l~~~l~~~~~~~~~--~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS 364 (470)
++|++++.+ +.++ ++|+|+|++.....+..++++++++++++.++|+|+|+. +++.++|+.||++++||
T Consensus 238 i~a~~~l~~-------~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps 310 (405)
T TIGR03449 238 LRAVAELLD-------RDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPS 310 (405)
T ss_pred HHHHHHHHh-------hCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECC
Confidence 999998865 3355 999999964322214678899999999999999999985 78999999999999999
Q ss_pred CCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 012132 365 QAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEI 444 (470)
Q Consensus 365 ~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 444 (470)
. .|+||++++|||++|+|||+++.||.+|++.++.+|++++++| +++++++|.+++++++.++++++++++.+ ++
T Consensus 311 ~--~E~~g~~~lEAma~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d--~~~la~~i~~~l~~~~~~~~~~~~~~~~~-~~ 385 (405)
T TIGR03449 311 Y--NESFGLVAMEAQACGTPVVAARVGGLPVAVADGETGLLVDGHD--PADWADALARLLDDPRTRIRMGAAAVEHA-AG 385 (405)
T ss_pred C--CCCcChHHHHHHHcCCCEEEecCCCcHhhhccCCceEECCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHH-Hh
Confidence 9 9999999999999999999999999999999999999999988 99999999999999999999999999987 56
Q ss_pred cChhHHHHHHHHHHHHHHH
Q 012132 445 FQEHHMAERIAVVLKEVLK 463 (470)
Q Consensus 445 fs~~~~~~~~~~~~~~~l~ 463 (470)
|||+++++++.++|.+++.
T Consensus 386 fsw~~~~~~~~~~y~~~~~ 404 (405)
T TIGR03449 386 FSWAATADGLLSSYRDALA 404 (405)
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999864
No 8
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=1.9e-43 Score=350.05 Aligned_cols=367 Identities=16% Similarity=0.179 Sum_probs=265.1
Q ss_pred cEEEEEeeccCC----CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhh---h---------hhhhcceeeEe
Q 012132 75 KLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLE---H---------KMWDRGVQVIS 138 (470)
Q Consensus 75 ~kIl~v~~~~~~----~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~---~---------~~~~~~~~~~~ 138 (470)
|||++++.++.| ||.+.++..|+++|+++||+|.|+++..+...... .... . .....|++++.
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gv~v~~ 79 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKL-RDAQVVGRLDLFTVLFGHLEGDGVPVYL 79 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhh-cCceEEEEeeeEEEEEEeEEcCCceEEE
Confidence 799999998543 66699999999999999999999997654321110 0000 0 00113444432
Q ss_pred cCC------------h-------------hhHHh--hcCCcEEEEcccchhhhHHHHhhhc-CCccccceeeEEeeeccc
Q 012132 139 AKG------------Q-------------ETINT--ALKADLIVLNTAVAGKWLDAVLKED-VPRVLPNVLWWIHEMRGH 190 (470)
Q Consensus 139 ~~~------------~-------------~~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~~~ 190 (470)
... . ..+.. ..+|||||+|+..++.....+.... ......|+++|+|+....
T Consensus 80 v~~~~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~~~~~~l~~~~~~~~~~~~~v~TiH~~~~~ 159 (466)
T PRK00654 80 IDAPHLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTGLIPALLKEKYWRGYPDIKTVFTIHNLAYQ 159 (466)
T ss_pred EeCHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHHHHHHHHHHhhhccCCCCCEEEEcCCCcCC
Confidence 110 0 01111 2489999999866554333222110 111136899999986421
Q ss_pred c-ch---------------hh----------hhcccccccceeeeehhhHHHHHHh-----hhhhhccCCCceEEEecCC
Q 012132 191 Y-FK---------------LD----------YVKHLPLVAGAMIDSHVTAEYWKNR-----TRERLRIKMPDTYVVHLGN 239 (470)
Q Consensus 191 ~-~~---------------~~----------~~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~~~~~~~~i~vi~ngv 239 (470)
. +. .. ....+...+.++++|....+.+... +...++.+..++.+|+||+
T Consensus 160 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGi 239 (466)
T PRK00654 160 GLFPAEILGELGLPAEAFHLEGLEFYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGI 239 (466)
T ss_pred CcCCHHHHHHcCCChHHcCchhhhcCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCC
Confidence 0 10 00 0112355677888888876665432 1112334567899999999
Q ss_pred chhhhhHhhhHH-----------HHHHHHHHHHHHcCCCC-CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCC
Q 012132 240 SKELMEVAEDNV-----------AKRVLREHVRESLGVRN-EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP 307 (470)
Q Consensus 240 d~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~-~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~ 307 (470)
|.+.|.|..+.. .+...++.+|+++|+++ +.++|+++||+.++||++.+++|++++.+ .
T Consensus 240 d~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~---------~ 310 (466)
T PRK00654 240 DYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLE---------Q 310 (466)
T ss_pred CccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHh---------c
Confidence 999987653211 11233567899999985 67899999999999999999999998854 5
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEE-EecccCC-HHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCE
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLT-VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPV 385 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~-~~g~~~~-~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~Pv 385 (470)
+++|+|+|+|.+ ++.+.+++++++++ +++. +.|+.++ +..+|++||++|+||. .|+||++++|||+||+|+
T Consensus 311 ~~~lvivG~g~~---~~~~~l~~l~~~~~--~~v~~~~g~~~~~~~~~~~~aDv~v~PS~--~E~~gl~~lEAma~G~p~ 383 (466)
T PRK00654 311 GGQLVLLGTGDP---ELEEAFRALAARYP--GKVGVQIGYDEALAHRIYAGADMFLMPSR--FEPCGLTQLYALRYGTLP 383 (466)
T ss_pred CCEEEEEecCcH---HHHHHHHHHHHHCC--CcEEEEEeCCHHHHHHHHhhCCEEEeCCC--CCCchHHHHHHHHCCCCE
Confidence 799999998732 36788999998886 3565 4677644 5688999999999999 999999999999999999
Q ss_pred EecCCCCcceeeecC------ceeeeecCCCCChHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Q 012132 386 LGTAAGGTTEIVVNG------TTGLLHPVGKEGITPLAKNIVKLAT---HVERRLTMGKRGYERVKEIFQEHHMAERIAV 456 (470)
Q Consensus 386 I~s~~~g~~e~v~~~------~~G~l~~~~d~~~~~la~~i~~ll~---~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~ 456 (470)
|++++||+.|++.++ .+|++++++| +++|+++|.++++ +++.+.++++++++ +.|||++++++|++
T Consensus 384 V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d--~~~la~~i~~~l~~~~~~~~~~~~~~~~~~---~~fsw~~~a~~~~~ 458 (466)
T PRK00654 384 IVRRTGGLADTVIDYNPEDGEATGFVFDDFN--AEDLLRALRRALELYRQPPLWRALQRQAMA---QDFSWDKSAEEYLE 458 (466)
T ss_pred EEeCCCCccceeecCCCCCCCCceEEeCCCC--HHHHHHHHHHHHHHhcCHHHHHHHHHHHhc---cCCChHHHHHHHHH
Confidence 999999999999888 8999999998 9999999999886 67778888887753 67999999999999
Q ss_pred HHHHHHH
Q 012132 457 VLKEVLK 463 (470)
Q Consensus 457 ~~~~~l~ 463 (470)
+|++++.
T Consensus 459 lY~~~~~ 465 (466)
T PRK00654 459 LYRRLLG 465 (466)
T ss_pred HHHHHhh
Confidence 9999874
No 9
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=3.8e-43 Score=353.51 Aligned_cols=353 Identities=15% Similarity=0.155 Sum_probs=257.4
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHHHhCCc--------------eEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC-
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGT--------------KVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK- 140 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~--------------~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 140 (470)
||+++.+....||+|+++.+|+.+|.+.++ +|.+++........ .+...+...|+.+....
T Consensus 283 rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~----~~~~~L~~~Gv~v~~l~~ 358 (694)
T PRK15179 283 PVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGAD----FFAATLADAGIPVSVYSD 358 (694)
T ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcc----hHHHHHHhCCCeEEEecc
Confidence 799999999999999999999999999854 34444322111000 11223334555443221
Q ss_pred --------------------------------ChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceee-EEeee
Q 012132 141 --------------------------------GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLW-WIHEM 187 (470)
Q Consensus 141 --------------------------------~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~ 187 (470)
....+.+..+|||||+|+.....+...+... . ..|+++ +.|+.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~h~~~a~~lg~lAa~~-~---gvPvIv~t~h~~ 434 (694)
T PRK15179 359 MQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVHIWQDGSIFACALAALL-A---GVPRIVLSVRTM 434 (694)
T ss_pred CCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHH-c---CCCEEEEEeCCC
Confidence 1123456689999999987655433322221 1 134444 45643
Q ss_pred ccccchhhh----h---cccccccce--eeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHH
Q 012132 188 RGHYFKLDY----V---KHLPLVAGA--MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLRE 258 (470)
Q Consensus 188 ~~~~~~~~~----~---~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~ 258 (470)
........+ . ..+...+.. +++|... .+.+.+.++++.+++.|||||+|.+.|.+.+... ..+.
T Consensus 435 ~~~~~~~~~~~~~~~l~~~l~~~~~~i~Vs~S~~~----~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~---~~~~ 507 (694)
T PRK15179 435 PPVDRPDRYRVEYDIIYSELLKMRGVALSSNSQFA----AHRYADWLGVDERRIPVVYNGLAPLKSVQDDACT---AMMA 507 (694)
T ss_pred ccccchhHHHHHHHHHHHHHHhcCCeEEEeCcHHH----HHHHHHHcCCChhHEEEECCCcCHHhcCCCchhh---HHHH
Confidence 221111111 1 111222322 3333333 3334446788889999999999988875432110 0011
Q ss_pred HHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCC
Q 012132 259 HVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ 338 (470)
Q Consensus 259 ~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~ 338 (470)
.++ ...+.+.++|+++||+.+.||++.+++|++++.+ ++|+++|+|+|+| +..+.++++++++++.
T Consensus 508 ~~~--~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~-------~~p~~~LvIvG~G-----~~~~~L~~l~~~lgL~ 573 (694)
T PRK15179 508 QFD--ARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAA-------SHPKVRFIMVGGG-----PLLESVREFAQRLGMG 573 (694)
T ss_pred hhc--cccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHH-------HCcCeEEEEEccC-----cchHHHHHHHHHcCCC
Confidence 111 2234567899999999999999999999998865 4589999999998 5788999999999999
Q ss_pred CcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHH
Q 012132 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAK 418 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~ 418 (470)
++|+|+|+++++..+|+.+|++|+||. +|+||++++|||+||+|||+|+.||.+|+|.++.+|++++++|.+++++++
T Consensus 574 ~~V~flG~~~dv~~ll~aaDv~VlpS~--~Egfp~vlLEAMA~G~PVVat~~gG~~EiV~dg~~GlLv~~~d~~~~~La~ 651 (694)
T PRK15179 574 ERILFTGLSRRVGYWLTQFNAFLLLSR--FEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQEGVTGLTLPADTVTAPDVAE 651 (694)
T ss_pred CcEEEcCCcchHHHHHHhcCEEEeccc--cccchHHHHHHHHcCCeEEEECCCChHHHccCCCCEEEeCCCCCChHHHHH
Confidence 999999999999999999999999999 999999999999999999999999999999999999999988855679999
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Q 012132 419 NIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 419 ~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 459 (470)
+|.+++.+......+++++++++.++|||+.++++++++|+
T Consensus 652 aL~~ll~~l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 652 ALARIHDMCAADPGIARKAADWASARFSLNQMIASTVRCYQ 692 (694)
T ss_pred HHHHHHhChhccHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 99998887666677889999999999999999999999995
No 10
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=2.3e-43 Score=342.68 Aligned_cols=349 Identities=17% Similarity=0.199 Sum_probs=264.6
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhH---H-Hhhhhhh-----------hhcc------
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEV---I-YSLEHKM-----------WDRG------ 133 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~---~-~~~~~~~-----------~~~~------ 133 (470)
|||+++...+|. -.|+++.+-+.+|.++||+|.+++..++...... . +.+.... ....
T Consensus 1 m~ia~~~~~~P~-~setFi~~ei~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (406)
T PRK15427 1 MKVGFFLLKFPL-SSETFVLNQITAFIDMGFEVEIVALQKGDTQNTHAAWTKYNLAAKTRWLQDEPQGKVAKLRHRASQT 79 (406)
T ss_pred CeEEEEeccCCc-cchhhHHHHHHHHHHcCceEEEEEccCCCccccccchhhhccccceeecCcCccchHHHHhhhhhhH
Confidence 699999999984 3389999999999999999999996544321100 0 0000000 0000
Q ss_pred ee-eE-----ecCC-------h---------hhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc
Q 012132 134 VQ-VI-----SAKG-------Q---------ETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY 191 (470)
Q Consensus 134 ~~-~~-----~~~~-------~---------~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 191 (470)
.. .. .... . ....+..+||+||+|....+.....+... .....+.+++.|+.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diihaH~~~~~~~~~~~~~~--~~~~~~~~~t~Hg~d~~~ 157 (406)
T PRK15427 80 LRGIHRKNTWKALNLKRYGAESRNLILSAICAQVATPFVADVFIAHFGPAGVTAAKLREL--GVLRGKIATIFHGIDISS 157 (406)
T ss_pred hhhhcccchhccCChhhhhhhhHHHHHHHHHhhhhccCCCCEEEEcCChHHHHHHHHHHh--CCCCCCeEEEEccccccc
Confidence 00 00 0000 0 01123568999999987654433332221 112235677888753211
Q ss_pred ------chhhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcC
Q 012132 192 ------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLG 265 (470)
Q Consensus 192 ------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~ 265 (470)
+...+...+...+.+++.|....+.+. .++++.+++.+||||+|.+.|.+....
T Consensus 158 ~~~~~~~~~~~~~~~~~ad~vv~~S~~~~~~l~-----~~g~~~~ki~vi~nGvd~~~f~~~~~~--------------- 217 (406)
T PRK15427 158 REVLNHYTPEYQQLFRRGDLMLPISDLWAGRLQ-----KMGCPPEKIAVSRMGVDMTRFSPRPVK--------------- 217 (406)
T ss_pred chhhhhhhHHHHHHHHhCCEEEECCHHHHHHHH-----HcCCCHHHEEEcCCCCCHHHcCCCccc---------------
Confidence 112334445677788888877766554 357778899999999999988643211
Q ss_pred CCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEec
Q 012132 266 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345 (470)
Q Consensus 266 ~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g 345 (470)
.+.+++.|+++||+.+.||++.+++|++.+.+ +.++++++|+|+| ++.++++++++++++.++|+|+|
T Consensus 218 ~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~-------~~~~~~l~ivG~G-----~~~~~l~~~~~~~~l~~~V~~~G 285 (406)
T PRK15427 218 APATPLEIISVARLTEKKGLHVAIEACRQLKE-------QGVAFRYRILGIG-----PWERRLRTLIEQYQLEDVVEMPG 285 (406)
T ss_pred cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHh-------hCCCEEEEEEECc-----hhHHHHHHHHHHcCCCCeEEEeC
Confidence 12456789999999999999999999998855 4478999999999 68899999999999999999999
Q ss_pred cc--CCHHHHHHhcCEEEEccCC----cccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHH
Q 012132 346 KT--LTVAPYLAAIDVLVQNSQA----WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKN 419 (470)
Q Consensus 346 ~~--~~~~~~~~~aDv~v~pS~~----~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~ 419 (470)
++ +++.++|+.||++|+||.. ..||+|++++|||+||+|||+|+.||++|++.++.+|++++++| +++++++
T Consensus 286 ~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~E~v~~~~~G~lv~~~d--~~~la~a 363 (406)
T PRK15427 286 FKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELVEADKSGWLVPEND--AQALAQR 363 (406)
T ss_pred CCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCchhhhcCCCceEEeCCCC--HHHHHHH
Confidence 86 7899999999999999971 03999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHh-CHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Q 012132 420 IVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 460 (470)
Q Consensus 420 i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 460 (470)
|.++++ |++.+++|++++++++.++|+|+.+++++.++|++
T Consensus 364 i~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 364 LAAFSQLDTDELAPVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 999999 99999999999999999999999999999999986
No 11
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=2e-43 Score=346.76 Aligned_cols=357 Identities=14% Similarity=0.082 Sum_probs=269.1
Q ss_pred cEEEEEeeccCC--CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHh----hhhhhhhcceeeEecCCh------
Q 012132 75 KLVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYS----LEHKMWDRGVQVISAKGQ------ 142 (470)
Q Consensus 75 ~kIl~v~~~~~~--~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~------ 142 (470)
|||++++..+.| ||++.++.+++++|.++||+|+|+|..+..+.+..... ........|+.+++.+..
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~~~~~ 80 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVPKQPS 80 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCCCCcc
Confidence 799999987765 77899999999999999999999996532111100000 000111235555443210
Q ss_pred ----------------hhHHh--hcCCcEEEEcccchhh-hHHHHhhhcCCccccceeeEEeeecccc------ch----
Q 012132 143 ----------------ETINT--ALKADLIVLNTAVAGK-WLDAVLKEDVPRVLPNVLWWIHEMRGHY------FK---- 193 (470)
Q Consensus 143 ----------------~~~~~--~~~~DiV~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~~~~------~~---- 193 (470)
..+.+ ..+||+||+|.+.... .....++... ..++++++|+..... ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~~~~---~~~~v~~~~d~~~~~~~~~~~~~~~~~ 157 (412)
T PRK10307 81 GLKRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLARLS---GARTWLHIQDYEVDAAFGLGLLKGGKV 157 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHHHhh---CCCEEEEeccCCHHHHHHhCCccCcHH
Confidence 00111 2689999999865322 1222222211 146777788754211 00
Q ss_pred -----hhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCC
Q 012132 194 -----LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRN 268 (470)
Q Consensus 194 -----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 268 (470)
......+..++.+++.|....+.+. .++.+..++.+||||+|.+.|.+.... .+..+++++++++
T Consensus 158 ~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~-----~~~~~~~~i~vi~ngvd~~~~~~~~~~-----~~~~~~~~~~~~~ 227 (412)
T PRK10307 158 ARLATAFERSLLRRFDNVSTISRSMMNKAR-----EKGVAAEKVIFFPNWSEVARFQPVADA-----DVDALRAQLGLPD 227 (412)
T ss_pred HHHHHHHHHHHHhhCCEEEecCHHHHHHHH-----HcCCCcccEEEECCCcCHhhcCCCCcc-----chHHHHHHcCCCC
Confidence 0112234567888888888877654 346677889999999999887654221 1345788899988
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc-
Q 012132 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT- 347 (470)
Q Consensus 269 ~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~- 347 (470)
++++++|+|++.+.||++.+++|++.+. +.++++|+|+|+| +..++++++++++++. +|+|+|++
T Consensus 228 ~~~~i~~~G~l~~~kg~~~li~a~~~l~--------~~~~~~l~ivG~g-----~~~~~l~~~~~~~~l~-~v~f~G~~~ 293 (412)
T PRK10307 228 GKKIVLYSGNIGEKQGLELVIDAARRLR--------DRPDLIFVICGQG-----GGKARLEKMAQCRGLP-NVHFLPLQP 293 (412)
T ss_pred CCEEEEEcCccccccCHHHHHHHHHHhc--------cCCCeEEEEECCC-----hhHHHHHHHHHHcCCC-ceEEeCCCC
Confidence 8899999999999999999999998763 2378999999999 6788999999999986 79999985
Q ss_pred -CCHHHHHHhcCEEEEccCCcccc----cchHHHHHHhcCCCEEecCCCC--cceeeecCceeeeecCCCCChHHHHHHH
Q 012132 348 -LTVAPYLAAIDVLVQNSQAWGEC----FGRITIEAMAFQLPVLGTAAGG--TTEIVVNGTTGLLHPVGKEGITPLAKNI 420 (470)
Q Consensus 348 -~~~~~~~~~aDv~v~pS~~~~E~----~g~~~lEAma~G~PvI~s~~~g--~~e~v~~~~~G~l~~~~d~~~~~la~~i 420 (470)
+++..+|++||++++||. .|+ +|.+++|||+||+|||+|+.+| ..|++. ++|++++++| +++|+++|
T Consensus 294 ~~~~~~~~~~aDi~v~ps~--~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~--~~G~~~~~~d--~~~la~~i 367 (412)
T PRK10307 294 YDRLPALLKMADCHLLPQK--AGAADLVLPSKLTNMLASGRNVVATAEPGTELGQLVE--GIGVCVEPES--VEALVAAI 367 (412)
T ss_pred HHHHHHHHHhcCEeEEeec--cCcccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHh--CCcEEeCCCC--HHHHHHHH
Confidence 689999999999999999 788 5777899999999999999876 457775 5899999998 99999999
Q ss_pred HHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHh
Q 012132 421 VKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 464 (470)
Q Consensus 421 ~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~ 464 (470)
.++++|++.+++|+++++++++++|||+.++++++++|++++.+
T Consensus 368 ~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 411 (412)
T PRK10307 368 AALARQALLRPKLGTVAREYAERTLDKENVLRQFIADIRGLVAE 411 (412)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999998864
No 12
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=8e-43 Score=338.55 Aligned_cols=352 Identities=20% Similarity=0.247 Sum_probs=267.9
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceee--E---e--------cCC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--I---S--------AKG 141 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~--------~~~ 141 (470)
|||+++++. ..||.++++.++++.|.++||+|+|++...+...... ........+.+ . . ...
T Consensus 1 mki~~~~~p-~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (371)
T cd04962 1 MKIGIVCYP-TYGGSGVVATELGKALARRGHEVHFITSSRPFRLDEY----SPNIFFHEVEVPQYPLFQYPPYDLALASK 75 (371)
T ss_pred CceeEEEEe-CCCCccchHHHHHHHHHhcCCceEEEecCCCcchhhh----ccCeEEEEecccccchhhcchhHHHHHHH
Confidence 689999842 3477799999999999999999999996543211000 00000000000 0 0 011
Q ss_pred hhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc------chhhhhcccccccceeeeehhhHH
Q 012132 142 QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY------FKLDYVKHLPLVAGAMIDSHVTAE 215 (470)
Q Consensus 142 ~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~------~~~~~~~~~~~~~~~~~~s~~~~~ 215 (470)
.....+..+||+||+|......+..............+++++.|+..... +.......+...+.+++.|....+
T Consensus 76 l~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~ 155 (371)
T cd04962 76 IAEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITLVGQDPSFQPATRFSIEKSDGVTAVSESLRQ 155 (371)
T ss_pred HHHHHhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccccccccccchHHHHHHHhhCCEEEEcCHHHHH
Confidence 22334567999999997543322222222111112357888899643211 111223334567788888887766
Q ss_pred HHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHH
Q 012132 216 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYES 295 (470)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l 295 (470)
.+.+ .++ ...++.+||||+|...+.+.. ....+++++++++..+++++||+.+.||++.+++++.++
T Consensus 156 ~~~~----~~~-~~~~i~vi~n~~~~~~~~~~~--------~~~~~~~~~~~~~~~~il~~g~l~~~K~~~~li~a~~~l 222 (371)
T cd04962 156 ETYE----LFD-ITKEIEVIPNFVDEDRFRPKP--------DEALKRRLGAPEGEKVLIHISNFRPVKRIDDVIRIFAKV 222 (371)
T ss_pred HHHH----hcC-CcCCEEEecCCcCHhhcCCCc--------hHHHHHhcCCCCCCeEEEEecccccccCHHHHHHHHHHH
Confidence 5553 332 456799999999988775443 234567788888899999999999999999999999887
Q ss_pred HHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHH
Q 012132 296 LELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRIT 375 (470)
Q Consensus 296 ~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~ 375 (470)
.+ + ++++++++|.| +..+.++++++++++.++|+|+|+.+++.++|+.+|++++||. .|+||+++
T Consensus 223 ~~-------~-~~~~l~i~G~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~v~ps~--~E~~~~~~ 287 (371)
T cd04962 223 RK-------E-VPARLLLVGDG-----PERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSE--KESFGLAA 287 (371)
T ss_pred Hh-------c-CCceEEEEcCC-----cCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEEEeCCC--cCCCccHH
Confidence 54 1 46899999998 4677889999999999999999999999999999999999998 99999999
Q ss_pred HHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Q 012132 376 IEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 455 (470)
Q Consensus 376 lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 455 (470)
+|||++|+|||+|+.|+..|++.++.+|++++++| +++++++|.++++|++.+.+|++++++.+.++|||+.+++++.
T Consensus 288 ~EAma~g~PvI~s~~~~~~e~i~~~~~G~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 365 (371)
T cd04962 288 LEAMACGVPVVASNAGGIPEVVKHGETGFLVDVGD--VEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSERIVPQYE 365 (371)
T ss_pred HHHHHcCCCEEEeCCCCchhhhcCCCceEEcCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999999999999999999999988 9999999999999999999999999999889999999999999
Q ss_pred HHHHHH
Q 012132 456 VVLKEV 461 (470)
Q Consensus 456 ~~~~~~ 461 (470)
++|+++
T Consensus 366 ~~y~~~ 371 (371)
T cd04962 366 ALYRRL 371 (371)
T ss_pred HHHHhC
Confidence 999863
No 13
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=9.1e-43 Score=343.18 Aligned_cols=352 Identities=15% Similarity=0.155 Sum_probs=244.2
Q ss_pred CchhHHHHHHHHHHHhCCc--eEEEEecCCCCCc--hhHHHhhhhhhhhcceeeEecCC---------------------
Q 012132 87 SGGPLLLMELAFLLRGVGT--KVNWITIQKPSEE--DEVIYSLEHKMWDRGVQVISAKG--------------------- 141 (470)
Q Consensus 87 ~G~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--------------------- 141 (470)
||.++++.+|+++|+++|| +|+|+|...+... ....... .....|+.+++...
T Consensus 26 GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~--~~~~~gv~v~r~~~~~~~~~~~~~~~~~~~~~~~~ 103 (439)
T TIGR02472 26 GGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPI--ERIAPGARIVRLPFGPRRYLRKELLWPYLDELADN 103 (439)
T ss_pred CCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCe--eEeCCCcEEEEecCCCCCCcChhhhhhhHHHHHHH
Confidence 7779999999999999997 9999995322110 0000000 11124555544321
Q ss_pred hhhHHhh--cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch---------h-------------hhh
Q 012132 142 QETINTA--LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK---------L-------------DYV 197 (470)
Q Consensus 142 ~~~~~~~--~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~---------~-------------~~~ 197 (470)
.....+. .+|||||+|+...+.. ........ ..|++.+.|+....... . ...
T Consensus 104 l~~~~~~~~~~~DvIH~h~~~~~~~-~~~~~~~~---~~p~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (439)
T TIGR02472 104 LLQHLRQQGHLPDLIHAHYADAGYV-GARLSRLL---GVPLIFTGHSLGREKRRRLLAAGLKPQQIEKQYNISRRIEAEE 179 (439)
T ss_pred HHHHHHHcCCCCCEEEEcchhHHHH-HHHHHHHh---CCCEEEecccccchhhhhcccCCCChhhhhhhcchHHHHHHHH
Confidence 1112222 3699999998544333 22222222 24788999974321100 0 001
Q ss_pred cccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEe
Q 012132 198 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 277 (470)
Q Consensus 198 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vG 277 (470)
..+...+.+++.+.. ...+.+....+++.+++.+||||+|.+.|.+..........+. .+++++.+++.++|+++|
T Consensus 180 ~~~~~ad~ii~~s~~---~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~vG 255 (439)
T TIGR02472 180 ETLAHASLVITSTHQ---EIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDN-LLAPFLKDPEKPPILAIS 255 (439)
T ss_pred HHHHhCCEEEECCHH---HHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHHH-HHHhhccccCCcEEEEEc
Confidence 123445556665432 2222222223677889999999999998876432111111112 223345556778999999
Q ss_pred ecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcC------hHHHHHHHHHHHhcCCCCcEEEecc--cCC
Q 012132 278 SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ------TKFESELRNYVMQKKIQDRVHFVNK--TLT 349 (470)
Q Consensus 278 rl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~------~~~~~~l~~~~~~~~l~~~V~~~g~--~~~ 349 (470)
|+.+.||++.+++|++.+.+ ++ +.+++. +|+|+|+... .++.+.+.++++++++.++|+|+|+ .++
T Consensus 256 rl~~~Kg~~~li~A~~~l~~-~~----~~~~l~-li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~ 329 (439)
T TIGR02472 256 RPDRRKNIPSLVEAYGRSPK-LQ----EMANLV-LVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDD 329 (439)
T ss_pred CCcccCCHHHHHHHHHhChh-hh----hhccEE-EEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHH
Confidence 99999999999999986522 11 113433 3567764221 0123456677889999999999996 478
Q ss_pred HHHHHHhc----CEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 350 VAPYLAAI----DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 350 ~~~~~~~a----Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
+.++|+.| |+||+||. .|+||++++||||||+|||+|+.||++|++.++.+|++++++| +++|+++|.++++
T Consensus 330 ~~~~~~~a~~~~Dv~v~pS~--~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~~~G~lv~~~d--~~~la~~i~~ll~ 405 (439)
T TIGR02472 330 VPELYRLAARSRGIFVNPAL--TEPFGLTLLEAAACGLPIVATDDGGPRDIIANCRNGLLVDVLD--LEAIASALEDALS 405 (439)
T ss_pred HHHHHHHHhhcCCEEecccc--cCCcccHHHHHHHhCCCEEEeCCCCcHHHhcCCCcEEEeCCCC--HHHHHHHHHHHHh
Confidence 99999987 99999999 9999999999999999999999999999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Q 012132 426 HVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 458 (470)
|++.++++++++++++.++|||+.++++|++++
T Consensus 406 ~~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 406 DSSQWQLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999876
No 14
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=1.8e-41 Score=325.57 Aligned_cols=352 Identities=18% Similarity=0.186 Sum_probs=251.0
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHH----HhCCc--------eEEEEecCCCCCchhHHHhhhhhhhhcceeeEec----
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLL----RGVGT--------KVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA---- 139 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L----~~~G~--------~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 139 (470)
.+++++.++..||+|+.+.+++-++ ++.|- .|.++|..-.+... .+.+...+...++.+...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 240 (578)
T PRK15490 163 RLALCTGSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELR--QDFFLKEVLEEQVEVLEIAKIT 240 (578)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccC--cchhHHHHHhcCCceEEeeccc
Confidence 5999999999999999888555544 44443 57777722111100 011222223333333211
Q ss_pred -----------------------------CChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccce-eeEEeeecc
Q 012132 140 -----------------------------KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNV-LWWIHEMRG 189 (470)
Q Consensus 140 -----------------------------~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~~ 189 (470)
.....+.+..+||+||+|...+..+... ..... ..|+ +.+.|....
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir~~rpDIVHt~~~~a~l~g~l-aA~la---gvpviv~~~h~~~~ 316 (578)
T PRK15490 241 GNLFDDATIESPELRLLLSHLPPVCKYGIKHLVPHLCERKLDYLSVWQDGACLMIAL-AALIA---GVPRIQLGLRGLPP 316 (578)
T ss_pred hhhhhhccccchHHHHHHhcCChHHHHHHHHHHHHHHHcCCCEEEEcCcccHHHHHH-HHHhc---CCCEEEEeecccCC
Confidence 0122455679999999998654333221 11111 1234 444554322
Q ss_pred ccchhhhhc---------c-cccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHH
Q 012132 190 HYFKLDYVK---------H-LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREH 259 (470)
Q Consensus 190 ~~~~~~~~~---------~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~ 259 (470)
......... . ....+ .++.+..+++.+ .+.++++++++.|||||+|.+.|.+.... +..
T Consensus 317 ~~~~r~~~~e~~~~~~a~~i~~~sd-~v~~s~~v~~~l----~~~lgip~~KI~VIyNGVD~~rf~p~~~~------~~~ 385 (578)
T PRK15490 317 VVRKRLFKPEYEPLYQALAVVPGVD-FMSNNHCVTRHY----ADWLKLEAKHFQVVYNGVLPPSTEPSSEV------PHK 385 (578)
T ss_pred cchhhHHHHHHHHhhhhceeEecch-hhhccHHHHHHH----HHHhCCCHHHEEEEeCCcchhhcCccchh------hHH
Confidence 211111100 0 11111 445555554444 34668899999999999999988764321 111
Q ss_pred HHH--HcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCC
Q 012132 260 VRE--SLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 337 (470)
Q Consensus 260 ~r~--~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l 337 (470)
.|+ ..+++++.++++++||+.+.||++.+++++.++.+ +.|+++|+|+|+| +..++++++++++++
T Consensus 386 ~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk-------~~pdirLvIVGdG-----~~~eeLk~la~elgL 453 (578)
T PRK15490 386 IWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAARYLQ-------HHPATRFVLVGDG-----DLRAEAQKRAEQLGI 453 (578)
T ss_pred HHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHHHHh-------HCCCeEEEEEeCc-----hhHHHHHHHHHHcCC
Confidence 222 23445667889999999999999999999988765 3489999999998 688999999999999
Q ss_pred CCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHH
Q 012132 338 QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLA 417 (470)
Q Consensus 338 ~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la 417 (470)
.++|+|+|+.+++..+|+.+|+||+||. +|+||++++|||+||+|||+|+.||.+|+|.++.+|++++++| +++++
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADVfVlPS~--~EGfp~vlLEAMA~GlPVVATdvGG~~EiV~dG~nG~LVp~~D--~~aLa 529 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNVFILFSR--YEGLPNVLIEAQMVGVPVISTPAGGSAECFIEGVSGFILDDAQ--TVNLD 529 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCEEEEccc--ccCccHHHHHHHHhCCCEEEeCCCCcHHHcccCCcEEEECCCC--hhhHH
Confidence 9999999999999999999999999999 9999999999999999999999999999999999999999998 88888
Q ss_pred HHH---HHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Q 012132 418 KNI---VKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 460 (470)
Q Consensus 418 ~~i---~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 460 (470)
+++ ..+.++.+.+..++++++++++++|||+.|+++|.++|..
T Consensus 530 ~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 530 QACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 876 4445555556679999999999999999999999999975
No 15
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=8.7e-42 Score=339.97 Aligned_cols=365 Identities=19% Similarity=0.176 Sum_probs=262.6
Q ss_pred cEEEEEeeccCC----CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhh------------------hhhhc
Q 012132 75 KLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEH------------------KMWDR 132 (470)
Q Consensus 75 ~kIl~v~~~~~~----~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~------------------~~~~~ 132 (470)
|||++++.++.| ||.+.++..|+++|+++||+|.|+++..+............ .....
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVE 80 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEEC
Confidence 799999999554 56699999999999999999999997655422110000000 00011
Q ss_pred ceeeEecCC------------------h-h---------hHH--hhcCCcEEEEcccchhhhHHHHhhhcCCccccceee
Q 012132 133 GVQVISAKG------------------Q-E---------TIN--TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLW 182 (470)
Q Consensus 133 ~~~~~~~~~------------------~-~---------~~~--~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (470)
|++++.... . + .+. ...+|||||+|+...+..... ++.......+|+++
T Consensus 81 ~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~~~~~~-l~~~~~~~~~~~v~ 159 (473)
T TIGR02095 81 GVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTALVPAL-LKAVYRPNPIKTVF 159 (473)
T ss_pred CceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHH-HHhhccCCCCCEEE
Confidence 233221100 0 0 011 126899999998655443332 22211110257899
Q ss_pred EEeeeccc-cchhh-------------------------hhcccccccceeeeehhhHHHHHHhh-----hhhhccCCCc
Q 012132 183 WIHEMRGH-YFKLD-------------------------YVKHLPLVAGAMIDSHVTAEYWKNRT-----RERLRIKMPD 231 (470)
Q Consensus 183 ~~h~~~~~-~~~~~-------------------------~~~~~~~~~~~~~~s~~~~~~~~~~~-----~~~~~~~~~~ 231 (470)
++|+.... .+... ....+...+.++++|....+.+.... ...+..+..+
T Consensus 160 TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~k 239 (473)
T TIGR02095 160 TIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGK 239 (473)
T ss_pred EcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCC
Confidence 99986421 11100 01123456777888877765554310 0011124578
Q ss_pred eEEEecCCchhhhhHhhhHH-----------HHHHHHHHHHHHcCCCC--CCeEEEEEeecccCCCHHHHHHHHHHHHHH
Q 012132 232 TYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQDLFLHSFYESLEL 298 (470)
Q Consensus 232 i~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~--~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~ 298 (470)
+.+|+||+|.+.|.|..+.. .+...+..+++++|++. +.++|+++||+.++||++.+++|+.++.+
T Consensus 240 i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~- 318 (473)
T TIGR02095 240 LRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLE- 318 (473)
T ss_pred eEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEecCccccChHHHHHHHHHHHH-
Confidence 99999999999987653321 12233567899999986 67999999999999999999999998854
Q ss_pred HHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHH
Q 012132 299 IKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITI 376 (470)
Q Consensus 299 l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~l 376 (470)
.+++|+|+|+|. +++.+++++++++++ +++.+.+.. +++..+|++||++++||. .|+||++++
T Consensus 319 --------~~~~lvi~G~g~---~~~~~~l~~~~~~~~--~~v~~~~~~~~~~~~~~~~~aDv~l~pS~--~E~~gl~~l 383 (473)
T TIGR02095 319 --------LGGQLVVLGTGD---PELEEALRELAERYP--GNVRVIIGYDEALAHLIYAGADFILMPSR--FEPCGLTQL 383 (473)
T ss_pred --------cCcEEEEECCCC---HHHHHHHHHHHHHCC--CcEEEEEcCCHHHHHHHHHhCCEEEeCCC--cCCcHHHHH
Confidence 469999999984 246788888887764 567776643 456789999999999999 999999999
Q ss_pred HHHhcCCCEEecCCCCcceeeecC------ceeeeecCCCCChHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHHcC
Q 012132 377 EAMAFQLPVLGTAAGGTTEIVVNG------TTGLLHPVGKEGITPLAKNIVKLAT----HVERRLTMGKRGYERVKEIFQ 446 (470)
Q Consensus 377 EAma~G~PvI~s~~~g~~e~v~~~------~~G~l~~~~d~~~~~la~~i~~ll~----~~~~~~~~~~~a~~~~~~~fs 446 (470)
|||+||+|||+++.||..|++.++ .+|+++++.| +++++++|.++++ +++.+++|++++++ +.||
T Consensus 384 EAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d--~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~---~~fs 458 (473)
T TIGR02095 384 YAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYD--PGALLAALSRALRLYRQDPSLWEALQKNAMS---QDFS 458 (473)
T ss_pred HHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCCC--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc---cCCC
Confidence 999999999999999999999988 8999999998 9999999999988 89999999988763 6799
Q ss_pred hhHHHHHHHHHHHHH
Q 012132 447 EHHMAERIAVVLKEV 461 (470)
Q Consensus 447 ~~~~~~~~~~~~~~~ 461 (470)
|++++++|+++|+++
T Consensus 459 w~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 459 WDKSAKQYVELYRSL 473 (473)
T ss_pred cHHHHHHHHHHHHhC
Confidence 999999999999863
No 16
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=2e-41 Score=330.73 Aligned_cols=344 Identities=20% Similarity=0.202 Sum_probs=262.6
Q ss_pred cEEEEEeeccCC---CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChh--------
Q 012132 75 KLVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE-------- 143 (470)
Q Consensus 75 ~kIl~v~~~~~~---~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 143 (470)
|||+++++.++| ||.+.++.+|+++|.++ |+|.|++...... ...++.++......
T Consensus 1 mkI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 67 (388)
T TIGR02149 1 MKVTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFGDQRF------------DSEGLTVKGYRPWSELKEANKA 67 (388)
T ss_pred CeeEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCCCchh------------cCCCeEEEEecChhhccchhhh
Confidence 799999999876 56689999999999987 7888877543211 12233333221100
Q ss_pred ---------hHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc-------------chhhhhcccc
Q 012132 144 ---------TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------------FKLDYVKHLP 201 (470)
Q Consensus 144 ---------~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~-------------~~~~~~~~~~ 201 (470)
......++|+||+|+........ .... . ...|++++.|+..... ........+.
T Consensus 68 ~~~~~~~~~~~~~~~~~divh~~~~~~~~~~~-~~~~-~--~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (388)
T TIGR02149 68 LGTFSVDLAMANDPVDADVVHSHTWYTFLAGH-LAKK-L--YDKPLVVTAHSLEPLRPWKEEQLGGGYKLSSWAEKTAIE 143 (388)
T ss_pred hhhhhHHHHHhhCCCCCCeEeecchhhhhHHH-HHHH-h--cCCCEEEEeecccccccccccccccchhHHHHHHHHHHh
Confidence 01122479999999865443222 2211 1 1257888999864321 0011123345
Q ss_pred cccceeeeehhhHHHHHHhhhhhh-ccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecc
Q 012132 202 LVAGAMIDSHVTAEYWKNRTRERL-RIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 280 (470)
Q Consensus 202 ~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~ 280 (470)
..+.+++.|....+.+.+ .+ +++..++.+||||+|.+.+.+.. +...+++++++++.++++++||+.
T Consensus 144 ~ad~vi~~S~~~~~~~~~----~~~~~~~~~i~vi~ng~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~Grl~ 211 (388)
T TIGR02149 144 AADRVIAVSGGMREDILK----YYPDLDPEKVHVIYNGIDTKEYKPDD--------GNVVLDRYGIDRSRPYILFVGRIT 211 (388)
T ss_pred hCCEEEEccHHHHHHHHH----HcCCCCcceEEEecCCCChhhcCCCc--------hHHHHHHhCCCCCceEEEEEcccc
Confidence 677888888877666554 44 56678899999999998876532 345778889988889999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCC-CCcEEEec-cc--CCHHHHHHh
Q 012132 281 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI-QDRVHFVN-KT--LTVAPYLAA 356 (470)
Q Consensus 281 ~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l-~~~V~~~g-~~--~~~~~~~~~ 356 (470)
+.||++.+++|++++. ++++++++|+|... +++.+.+++.+.+++. .++|.+++ .. +++.++|+.
T Consensus 212 ~~Kg~~~li~a~~~l~----------~~~~l~i~g~g~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 280 (388)
T TIGR02149 212 RQKGVPHLLDAVHYIP----------KDVQVVLCAGAPDT-PEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSN 280 (388)
T ss_pred cccCHHHHHHHHHHHh----------hcCcEEEEeCCCCc-HHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHh
Confidence 9999999999998773 46889998876432 2356778888887765 34577764 33 789999999
Q ss_pred cCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCCh------HHHHHHHHHHHhCHHHH
Q 012132 357 IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGI------TPLAKNIVKLATHVERR 430 (470)
Q Consensus 357 aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~------~~la~~i~~ll~~~~~~ 430 (470)
||++|+||. .|+||++++|||+||+|||+|+.||.+|++.++.+|++++++| . ++++++|.++++|++.+
T Consensus 281 aDv~v~ps~--~e~~g~~~lEA~a~G~PvI~s~~~~~~e~i~~~~~G~~~~~~~--~~~~~~~~~l~~~i~~l~~~~~~~ 356 (388)
T TIGR02149 281 AEVFVCPSI--YEPLGIVNLEAMACGTPVVASATGGIPEVVVDGETGFLVPPDN--SDADGFQAELAKAINILLADPELA 356 (388)
T ss_pred CCEEEeCCc--cCCCChHHHHHHHcCCCEEEeCCCCHHHHhhCCCceEEcCCCC--CcccchHHHHHHHHHHHHhCHHHH
Confidence 999999999 8999999999999999999999999999999999999999988 7 89999999999999999
Q ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Q 012132 431 LTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 462 (470)
Q Consensus 431 ~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l 462 (470)
+++++++++.+.++|||+.+++++.++|++++
T Consensus 357 ~~~~~~a~~~~~~~~s~~~~~~~~~~~y~~~~ 388 (388)
T TIGR02149 357 KKMGIAGRKRAEEEFSWGSIAKKTVEMYRKVL 388 (388)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999863
No 17
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=2.3e-41 Score=327.65 Aligned_cols=353 Identities=20% Similarity=0.196 Sum_probs=254.2
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceee-EecCC-------hhh---
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-ISAKG-------QET--- 144 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~--- 144 (470)
||+++++.+..||.++++.++++.|.+.||+|++++....+............. .|..+ ++... ...
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~ 78 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNAL--QGADIELSEEEKEIYLEWNEENAE 78 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhh--cCCCCCCCHHHHHHHHHHHHHHhc
Confidence 689999988778889999999999999999999998654332211101111111 12222 11000 000
Q ss_pred -HHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhh---hhcccccccceeeeehhhHHHHHHh
Q 012132 145 -INTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLD---YVKHLPLVAGAMIDSHVTAEYWKNR 220 (470)
Q Consensus 145 -~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~~~~~~ 220 (470)
.....+||+||+|++....+ ...... ...|++++.|.......... ..+.+...+.+++.+ .+..
T Consensus 79 ~~~~~~~~Dvv~~h~~~~~~~-~~~~~~----~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~d~~i~~~---~~~~--- 147 (372)
T cd03792 79 RPLLDLDADVVVIHDPQPLAL-PLFKKK----RGRPWIWRCHIDLSSPNRRVWDFLQPYIEDYDAAVFHL---PEYV--- 147 (372)
T ss_pred cccccCCCCEEEECCCCchhH-HHhhhc----CCCeEEEEeeeecCCCcHHHHHHHHHHHHhCCEEeecH---HHhc---
Confidence 12246899999998763222 211111 13568888997543222111 122233445555444 2221
Q ss_pred hhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHH
Q 012132 221 TRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIK 300 (470)
Q Consensus 221 ~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~ 300 (470)
..+++..++ +||||+|.......... .......|+++|++++.++|+++||+.+.||++.+++|++.+.+
T Consensus 148 ---~~~~~~~~~-vipngvd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~--- 217 (372)
T cd03792 148 ---PPQVPPRKV-IIPPSIDPLSGKNRELS---PADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKE--- 217 (372)
T ss_pred ---CCCCCCceE-EeCCCCCCCccccCCCC---HHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHh---
Confidence 123444555 99999997531111000 11245678889998899999999999999999999999998855
Q ss_pred hhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc----CCHHHHHHhcCEEEEccCCcccccchHHH
Q 012132 301 EKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT----LTVAPYLAAIDVLVQNSQAWGECFGRITI 376 (470)
Q Consensus 301 ~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~----~~~~~~~~~aDv~v~pS~~~~E~~g~~~l 376 (470)
+.++++|+|+|+|+..++...+.++++.+..++.++|.|+|.. +++..+|+++|++++||. .||||++++
T Consensus 218 ----~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~--~Eg~g~~~l 291 (372)
T cd03792 218 ----RVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSI--REGFGLTVT 291 (372)
T ss_pred ----hCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCC--ccCCCHHHH
Confidence 3478999999998654333445566666677888899999864 678999999999999999 999999999
Q ss_pred HHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Q 012132 377 EAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAV 456 (470)
Q Consensus 377 EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~ 456 (470)
|||+||+|||+|+.+|..+++.++.+|+++++ .++++++|.++++|++.+++|++++++.+.++|||+.+++++.+
T Consensus 292 EA~a~G~Pvv~s~~~~~~~~i~~~~~g~~~~~----~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~ 367 (372)
T cd03792 292 EALWKGKPVIAGPVGGIPLQIEDGETGFLVDT----VEEAAVRILYLLRDPELRRKMGANAREHVRENFLITRHLKDYLY 367 (372)
T ss_pred HHHHcCCCEEEcCCCCchhhcccCCceEEeCC----cHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999999999999999999999874 67889999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 012132 457 VLKEV 461 (470)
Q Consensus 457 ~~~~~ 461 (470)
+|+++
T Consensus 368 ~~~~~ 372 (372)
T cd03792 368 LISKL 372 (372)
T ss_pred HHHhC
Confidence 99863
No 18
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=6.1e-41 Score=331.10 Aligned_cols=369 Identities=17% Similarity=0.137 Sum_probs=264.5
Q ss_pred ccEEEEEeeccCC----CchhHHHHHHHHHHHhCCceEEEEecCCCCCchh---H--H---Hhh----hhh---------
Q 012132 74 SKLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE---V--I---YSL----EHK--------- 128 (470)
Q Consensus 74 ~~kIl~v~~~~~~----~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~---~--~---~~~----~~~--------- 128 (470)
+|||+|++.+..| ||-.-++..|.++|+++||+|.|+.+........ . . ..+ ...
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHVKVT 84 (489)
T ss_pred CcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEEEEEe
Confidence 4899999999654 6669999999999999999999999765433211 0 0 000 000
Q ss_pred -hhhcceeeEecCC---------h--------------h---------hHHh--hcCCcEEEEcccchhhhHHHHhhhc-
Q 012132 129 -MWDRGVQVISAKG---------Q--------------E---------TINT--ALKADLIVLNTAVAGKWLDAVLKED- 172 (470)
Q Consensus 129 -~~~~~~~~~~~~~---------~--------------~---------~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~- 172 (470)
....+++++.... . + .+.. ..+|||||+|+...+.....+....
T Consensus 85 ~~~~~~v~~~~~~~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~l~~~~l~~~~~ 164 (489)
T PRK14098 85 ALPSSKIQTYFLYNEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAGLVPLLLKTVYA 164 (489)
T ss_pred cccCCCceEEEEeCHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHhh
Confidence 0001223321100 0 0 1111 2589999999855444332221111
Q ss_pred --CCccccceeeEEeeecccc-ch-----h----h--------------hhcccccccceeeeehhhHHHHHHhhhhhhc
Q 012132 173 --VPRVLPNVLWWIHEMRGHY-FK-----L----D--------------YVKHLPLVAGAMIDSHVTAEYWKNRTRERLR 226 (470)
Q Consensus 173 --~~~~~~~~~~~~h~~~~~~-~~-----~----~--------------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 226 (470)
......|++.|+|+..... +. . . ....+..++.++++|...++.+.......+|
T Consensus 165 ~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~~i~~ad~VitVS~~~a~ei~~~~~~~~g 244 (489)
T PRK14098 165 DHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGDEVNMLYTGVEHADLLTTTSPRYAEEIAGDGEEAFG 244 (489)
T ss_pred hccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCCcccHHHHHHHhcCcceeeCHHHHHHhCcCCCCCcC
Confidence 0111368999999864211 00 0 0 0112345677888888887665431011133
Q ss_pred c------CCCceEEEecCCchhhhhHhhhHH-----------HHHHHHHHHHHHcCCCC--CCeEEEEEeecccCCCHHH
Q 012132 227 I------KMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQDL 287 (470)
Q Consensus 227 ~------~~~~i~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~--~~~~i~~vGrl~~~Kg~~~ 287 (470)
+ ...++.+|+||+|.+.|.|..+.. .+...+..+++++|++. +.++|+++||+.++||++.
T Consensus 245 l~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~~~~~i~~vgRl~~~KG~d~ 324 (489)
T PRK14098 245 LDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPFDEETPLVGVIINFDDFQGAEL 324 (489)
T ss_pred hHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCCccCCCEEEEeccccccCcHHH
Confidence 3 267899999999999988764321 12234677889999974 5689999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccC
Q 012132 288 FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQ 365 (470)
Q Consensus 288 ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~ 365 (470)
+++|+.++.+ ++++|+|+|+|+. ++++.+++++++++ ++|.|+|.. +++..+|++||++++||.
T Consensus 325 li~a~~~l~~---------~~~~lvivG~G~~---~~~~~l~~l~~~~~--~~V~~~g~~~~~~~~~~~a~aDi~l~PS~ 390 (489)
T PRK14098 325 LAESLEKLVE---------LDIQLVICGSGDK---EYEKRFQDFAEEHP--EQVSVQTEFTDAFFHLAIAGLDMLLMPGK 390 (489)
T ss_pred HHHHHHHHHh---------cCcEEEEEeCCCH---HHHHHHHHHHHHCC--CCEEEEEecCHHHHHHHHHhCCEEEeCCC
Confidence 9999998854 5799999999842 36788999998874 789999975 457899999999999999
Q ss_pred CcccccchHHHHHHhcCCCEEecCCCCcceeeec----CceeeeecCCCCChHHHHHHHHHHH---hCHHHHHHHHHHHH
Q 012132 366 AWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN----GTTGLLHPVGKEGITPLAKNIVKLA---THVERRLTMGKRGY 438 (470)
Q Consensus 366 ~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~----~~~G~l~~~~d~~~~~la~~i~~ll---~~~~~~~~~~~~a~ 438 (470)
.|+||++.+|||+||+|+|++++||+.|++.+ +.+|+++++.| +++|+++|.+++ +|++.+.++++++.
T Consensus 391 --~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d--~~~la~ai~~~l~~~~~~~~~~~~~~~~~ 466 (489)
T PRK14098 391 --IESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYT--PEALVAKLGEALALYHDEERWEELVLEAM 466 (489)
T ss_pred --CCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCC--HHHHHHHHHHHHHHHcCHHHHHHHHHHHh
Confidence 99999999999999999999999999998864 67999999998 999999999865 57887888776654
Q ss_pred HHHHHHcChhHHHHHHHHHHHHHHH
Q 012132 439 ERVKEIFQEHHMAERIAVVLKEVLK 463 (470)
Q Consensus 439 ~~~~~~fs~~~~~~~~~~~~~~~l~ 463 (470)
.+.|||++++++|+++|+++++
T Consensus 467 ---~~~fsw~~~a~~y~~lY~~~~~ 488 (489)
T PRK14098 467 ---ERDFSWKNSAEEYAQLYRELLG 488 (489)
T ss_pred ---cCCCChHHHHHHHHHHHHHHhc
Confidence 4679999999999999999864
No 19
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=1.5e-40 Score=321.17 Aligned_cols=348 Identities=22% Similarity=0.262 Sum_probs=259.2
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEe--------cCChhhHHh
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS--------AKGQETINT 147 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 147 (470)
|||++++....||+++.+.++++.|.++||+|++++..+......... ......+.... ......+.+
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKPPID----ATIILNLNMSKNPLSFLLALWKLRKILR 76 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccchhh----ccceEEecccccchhhHHHHHHHHHHHH
Confidence 589999888889999999999999999999999998544322111000 00000000000 011234456
Q ss_pred hcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchh-hhhcc-cccccceeeeehhhHHHHHHhhhhhh
Q 012132 148 ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL-DYVKH-LPLVAGAMIDSHVTAEYWKNRTRERL 225 (470)
Q Consensus 148 ~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~-~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~ 225 (470)
..+||+||+|......+.. +.+... ..++++.+.|+........ ...+. ....+..+..+... .+.+.+..
T Consensus 77 ~~~pdiv~~~~~~~~~~~~-l~~~~~--~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----~~~~~~~~ 149 (360)
T cd04951 77 QFKPDVVHAHMFHANIFAR-LLRLFL--PSPPLICTAHSKNEGGRLRMLAYRLTDFLSDLTTNVSKEA----LDYFIASK 149 (360)
T ss_pred hcCCCEEEEcccchHHHHH-HHHhhC--CCCcEEEEeeccCchhHHHHHHHHHHhhccCceEEEcHHH----HHHHHhcc
Confidence 6899999999865443322 222211 2357788888764321111 11111 11223333444444 33333344
Q ss_pred ccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccc
Q 012132 226 RIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLE 305 (470)
Q Consensus 226 ~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~ 305 (470)
.++.+++.+||||+|...+.+.... +...++++++++++++++++||+.+.||++.+++++.++.+ +
T Consensus 150 ~~~~~~~~~i~ng~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~-------~ 216 (360)
T cd04951 150 AFNANKSFVVYNGIDTDRFRKDPAR------RLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLS-------D 216 (360)
T ss_pred CCCcccEEEEccccchhhcCcchHH------HHHHHHHcCcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHh-------h
Confidence 5677899999999998877654321 45578889998889999999999999999999999998865 4
Q ss_pred CCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCE
Q 012132 306 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPV 385 (470)
Q Consensus 306 ~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~Pv 385 (470)
.|+++|+|+|+| +..+++++.++++++.++|.|+|+.+++..+|+.||++++||. .|++|++++|||++|+||
T Consensus 217 ~~~~~l~i~G~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~s~--~e~~~~~~~Ea~a~G~Pv 289 (360)
T cd04951 217 YLDIKLLIAGDG-----PLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSSA--WEGFGLVVAEAMACELPV 289 (360)
T ss_pred CCCeEEEEEcCC-----CcHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhceEEeccc--ccCCChHHHHHHHcCCCE
Confidence 478999999998 5678899999999998999999999999999999999999999 899999999999999999
Q ss_pred EecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Q 012132 386 LGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 386 I~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 459 (470)
|+++.|+..|++.+ +|++++++| +++++++|.++++ +++.+..++++ ++.+.+.|||+.++++|.++|+
T Consensus 290 I~~~~~~~~e~i~~--~g~~~~~~~--~~~~~~~i~~ll~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 290 VATDAGGVREVVGD--SGLIVPISD--PEALANKIDEILKMSGEERDIIGAR-RERIVKKFSINSIVQQWLTLYT 359 (360)
T ss_pred EEecCCChhhEecC--CceEeCCCC--HHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHhh
Confidence 99999999999965 789999988 9999999999995 56666777666 8888899999999999999996
No 20
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=4.1e-41 Score=328.91 Aligned_cols=347 Identities=23% Similarity=0.272 Sum_probs=255.7
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeE--ec----CCh------
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI--SA----KGQ------ 142 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~------ 142 (470)
||||++++++..||+++++.+|+++|.++||+|+++|...+.... .......++.+. .. ...
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 74 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHC------FEETKDGTLPVRVRGDWLPRSIFGRFHIL 74 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhc------chhccCCeeEEEEEeEEEcchhhHhHHHH
Confidence 799999999988999999999999999999999999964322110 001111112111 10 000
Q ss_pred ----h--------hHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccc------cchhhh--------
Q 012132 143 ----E--------TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH------YFKLDY-------- 196 (470)
Q Consensus 143 ----~--------~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~------~~~~~~-------- 196 (470)
+ ......++|+||+++......+.... .+ .+++++.|..... +....+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~---~~---~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e 148 (392)
T cd03805 75 CAYLRMLYLALYLLLLPDEKYDVFIVDQVSACVPLLKLF---SP---SKILFYCHFPDQLLAQRGSLLKRLYRKPFDWLE 148 (392)
T ss_pred HHHHHHHHHHHHHHhcccCCCCEEEEcCcchHHHHHHHh---cC---CcEEEEEecChHHhcCCCcHHHHHHHHHHHHHH
Confidence 0 02344789999998755433322111 11 4677888842211 111111
Q ss_pred hcccccccceeeeehhhHHHHHHhhhhhhcc-CCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEE
Q 012132 197 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRI-KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI 275 (470)
Q Consensus 197 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~ 275 (470)
...+...+.+++.|....+.+.+ .++. ...++.+|+||+|.+.|.+.... ..++....+++.+++++
T Consensus 149 ~~~~~~ad~ii~~s~~~~~~~~~----~~~~~~~~~~~vi~n~vd~~~~~~~~~~--------~~~~~~~~~~~~~~i~~ 216 (392)
T cd03805 149 EFTTGMADKIVVNSNFTASVFKK----TFPSLAKNPREVVYPCVDTDSFESTSED--------PDPGLLIPKSGKKTFLS 216 (392)
T ss_pred HHHhhCceEEEEcChhHHHHHHH----HhcccccCCcceeCCCcCHHHcCccccc--------ccccccccCCCceEEEE
Confidence 12245667788888887766654 3332 33335699999999887654321 12233445567899999
Q ss_pred EeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCc---ChHHHHHHHHHHHh-cCCCCcEEEeccc--CC
Q 012132 276 INSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA---QTKFESELRNYVMQ-KKIQDRVHFVNKT--LT 349 (470)
Q Consensus 276 vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~---~~~~~~~l~~~~~~-~~l~~~V~~~g~~--~~ 349 (470)
+||+.+.||++.+++|+.++.+... +.++++|+++|+|... ..++.+++++++++ +++.++|+|+|++ ++
T Consensus 217 ~grl~~~Kg~~~ll~a~~~l~~~~~----~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~ 292 (392)
T cd03805 217 INRFERKKNIALAIEAFAILKDKLA----EFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQ 292 (392)
T ss_pred EeeecccCChHHHHHHHHHHHhhcc----cccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHH
Confidence 9999999999999999999865211 0178999999988532 12356889999999 9999999999986 56
Q ss_pred HHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHH
Q 012132 350 VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVER 429 (470)
Q Consensus 350 ~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~ 429 (470)
+..+|+.||++++||. .|+||++++|||+||+|||+++.||..|++.++.+|+++++ | +++++++|.+++++++.
T Consensus 293 ~~~~l~~ad~~l~~s~--~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~~~-~--~~~~a~~i~~l~~~~~~ 367 (392)
T cd03805 293 KELLLSSARALLYTPS--NEHFGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFLCEP-T--PEEFAEAMLKLANDPDL 367 (392)
T ss_pred HHHHHhhCeEEEECCC--cCCCCchHHHHHHcCCCEEEECCCCcHHHhccCCceEEeCC-C--HHHHHHHHHHHHhChHH
Confidence 7899999999999999 89999999999999999999999999999999999999976 6 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHcChhHHHHHH
Q 012132 430 RLTMGKRGYERVKEIFQEHHMAERI 454 (470)
Q Consensus 430 ~~~~~~~a~~~~~~~fs~~~~~~~~ 454 (470)
++++++++++++.++|||+.+++++
T Consensus 368 ~~~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 368 ADRMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred HHHHHHHHHHHHHHhcCHHHHhhhC
Confidence 9999999999999999999998764
No 21
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=1.3e-40 Score=340.46 Aligned_cols=380 Identities=16% Similarity=0.121 Sum_probs=266.5
Q ss_pred ccccccEEEEEeeccC-------C------CchhHHHHHHHHHHHhCC--ceEEEEecCCCCCc--hh---HHHhh----
Q 012132 70 SFMKSKLVLLVSHELS-------L------SGGPLLLMELAFLLRGVG--TKVNWITIQKPSEE--DE---VIYSL---- 125 (470)
Q Consensus 70 ~~~~~~kIl~v~~~~~-------~------~G~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~--~~---~~~~~---- 125 (470)
...++|.|++|+.... . ||-..++.+||++|+++| |+|+++|.....+. +. ....+
T Consensus 165 ~~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~ 244 (1050)
T TIGR02468 165 QKEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRS 244 (1050)
T ss_pred cccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccc
Confidence 3346789999986522 1 334689999999999998 89999995543211 00 00000
Q ss_pred -----hhhhhhcceeeEecC------Chh-----------------hHHh-------------hcCCcEEEEcccchhhh
Q 012132 126 -----EHKMWDRGVQVISAK------GQE-----------------TINT-------------ALKADLIVLNTAVAGKW 164 (470)
Q Consensus 126 -----~~~~~~~~~~~~~~~------~~~-----------------~~~~-------------~~~~DiV~~~~~~~~~~ 164 (470)
.......|+.+++.+ ... .+.+ ...||+||+|....+..
T Consensus 245 ~~~~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~a 324 (1050)
T TIGR02468 245 SENDGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDS 324 (1050)
T ss_pred cccccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHH
Confidence 011112355554432 000 1100 01499999997665544
Q ss_pred HHHHhhhcCCccccceeeEEeeeccccc------------------h--hh---hhcccccccceeeeehhhHHHHHHhh
Q 012132 165 LDAVLKEDVPRVLPNVLWWIHEMRGHYF------------------K--LD---YVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~------------------~--~~---~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
...+... ...|++.|.|.....-. . .. ....+..++.+++.+....+.....+
T Consensus 325 a~~L~~~----lgVP~V~T~HSLgr~K~~~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY 400 (1050)
T TIGR02468 325 AALLSGA----LNVPMVLTGHSLGRDKLEQLLKQGRMSKEEINSTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWGLY 400 (1050)
T ss_pred HHHHHHh----hCCCEEEECccchhhhhhhhcccccccccccccccchHHHHHHHHHHHHhcCEEEEeCHHHHHHHHHHh
Confidence 3333322 22579999996421100 0 00 12234566777777776665432211
Q ss_pred ------------------hhhhccCCCceEEEecCCchhhhhHhhhHHHHH-------------HHHHHHHHHcCCCCCC
Q 012132 222 ------------------RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKR-------------VLREHVRESLGVRNED 270 (470)
Q Consensus 222 ------------------~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~-------------~~~~~~r~~~~~~~~~ 270 (470)
...||...+++.|||||+|.+.|.|........ .....++. +..++++
T Consensus 401 ~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~r-~~~~pdk 479 (1050)
T TIGR02468 401 DGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEIMR-FFTNPRK 479 (1050)
T ss_pred ccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchhhHHHHh-hcccCCC
Confidence 001233345899999999999998753221100 00123333 3445778
Q ss_pred eEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCc------ChHHHHHHHHHHHhcCCCCcEEEe
Q 012132 271 LLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA------QTKFESELRNYVMQKKIQDRVHFV 344 (470)
Q Consensus 271 ~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~------~~~~~~~l~~~~~~~~l~~~V~~~ 344 (470)
++|+++||+.+.||++.+|+|+..+.+.. ..+++. +|+|+++.. ..++...++++++++++.++|.|+
T Consensus 480 pvIL~VGRL~p~KGi~~LIeAf~~L~~l~-----~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g~V~Fl 553 (1050)
T TIGR02468 480 PMILALARPDPKKNITTLVKAFGECRPLR-----ELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYGQVAYP 553 (1050)
T ss_pred cEEEEEcCCccccCHHHHHHHHHHhHhhc-----cCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCCCCeEEec
Confidence 89999999999999999999999885421 125666 466875321 123457788999999999999999
Q ss_pred ccc--CCHHHHHHhc----CEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHH
Q 012132 345 NKT--LTVAPYLAAI----DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAK 418 (470)
Q Consensus 345 g~~--~~~~~~~~~a----Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~ 418 (470)
|+. +++..+|+.| |+||+||. .|+||++++||||||+|||+|+.||+.|++.++.+|+++++.| +++|++
T Consensus 554 G~v~~edvp~lYr~Ad~s~DVFV~PS~--~EgFGLvlLEAMAcGlPVVASdvGG~~EII~~g~nGlLVdP~D--~eaLA~ 629 (1050)
T TIGR02468 554 KHHKQSDVPDIYRLAAKTKGVFINPAF--IEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHD--QQAIAD 629 (1050)
T ss_pred CCCCHHHHHHHHHHhhhcCCeeeCCcc--cCCCCHHHHHHHHhCCCEEEeCCCCcHHHhccCCcEEEECCCC--HHHHHH
Confidence 974 8899999988 69999999 9999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHhh
Q 012132 419 NIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 465 (470)
Q Consensus 419 ~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~~ 465 (470)
+|.++++|++.+++|++++++.+. +|+|+.++++|++.|..+....
T Consensus 630 AL~~LL~Dpelr~~m~~~gr~~v~-~FSWe~ia~~yl~~i~~~~~~~ 675 (1050)
T TIGR02468 630 ALLKLVADKQLWAECRQNGLKNIH-LFSWPEHCKTYLSRIASCRPRH 675 (1050)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999985 5999999999999999987544
No 22
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=5.3e-40 Score=317.40 Aligned_cols=339 Identities=17% Similarity=0.263 Sum_probs=251.5
Q ss_pred cEEEEEeec-cC--C---CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcc--eeeEecCC-----
Q 012132 75 KLVLLVSHE-LS--L---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRG--VQVISAKG----- 141 (470)
Q Consensus 75 ~kIl~v~~~-~~--~---~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----- 141 (470)
.||+++++. ++ + ||+|+++..+++.|. ++|+++|...+..... + ....| +..++...
T Consensus 3 ~~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~---~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~ 72 (380)
T PRK15484 3 DKIIFTVTPIFSIPPRGAAAVETWIYQVAKRTS---IPNRIACIKNPGYPEY-----T--KVNDNCDIHYIGFSRIYKRL 72 (380)
T ss_pred ceEEEEeccCCCCCCccccHHHHHHHHhhhhcc---CCeeEEEecCCCCCch-----h--hccCCCceEEEEeccccchh
Confidence 577777665 33 3 555999999999994 3999999544431110 0 11112 22221111
Q ss_pred ------------hhhH---H---hhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccc
Q 012132 142 ------------QETI---N---TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLV 203 (470)
Q Consensus 142 ------------~~~~---~---~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~ 203 (470)
...+ . ...++|+||+|+..... ..+....+. .+++.++|+.... ..+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~---~~~~~~~~~--~~~v~~~h~~~~~-------~~~~~~ 140 (380)
T PRK15484 73 FQKWTRLDPLPYSQRILNIAHKFTITKDSVIVIHNSMKLY---RQIRERAPQ--AKLVMHMHNAFEP-------ELLDKN 140 (380)
T ss_pred hhhhhccCchhHHHHHHHHHHhcCCCCCcEEEEeCcHHhH---HHHHhhCCC--CCEEEEEecccCh-------hHhccC
Confidence 0111 1 12569999999854221 112222221 4778888865211 112345
Q ss_pred cceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCC
Q 012132 204 AGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGK 283 (470)
Q Consensus 204 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~K 283 (470)
+.+++.|....+.+.+ . .+..++.+||||+|.+.|.+.. ...++++++++.+..+++++||+.+.|
T Consensus 141 ~~ii~~S~~~~~~~~~----~--~~~~~i~vIpngvd~~~~~~~~--------~~~~~~~~~~~~~~~~il~~Grl~~~K 206 (380)
T PRK15484 141 AKIIVPSQFLKKFYEE----R--LPNADISIVPNGFCLETYQSNP--------QPNLRQQLNISPDETVLLYAGRISPDK 206 (380)
T ss_pred CEEEEcCHHHHHHHHh----h--CCCCCEEEecCCCCHHHcCCcc--------hHHHHHHhCCCCCCeEEEEeccCcccc
Confidence 6778888777665543 2 3556799999999998876532 234677888888889999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCc----ChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhc
Q 012132 284 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA----QTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAI 357 (470)
Q Consensus 284 g~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~----~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~a 357 (470)
|++.+++|+.++.+ ++|+++|+|+|+|... ...+.+.+++++++++ ++|.|+|++ +++.++|++|
T Consensus 207 g~~~Li~A~~~l~~-------~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~--~~v~~~G~~~~~~l~~~~~~a 277 (380)
T PRK15484 207 GILLLMQAFEKLAT-------AHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG--DRCIMLGGQPPEKMHNYYPLA 277 (380)
T ss_pred CHHHHHHHHHHHHH-------hCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcC--CcEEEeCCCCHHHHHHHHHhC
Confidence 99999999998865 4589999999987532 2235667777777765 589999986 6899999999
Q ss_pred CEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceee-eecCCCCChHHHHHHHHHHHhCHHHHHHHHHH
Q 012132 358 DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGL-LHPVGKEGITPLAKNIVKLATHVERRLTMGKR 436 (470)
Q Consensus 358 Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~-l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~ 436 (470)
|++|+||. +.|+||++++|||+||+|||+|+.||++|++.++.+|+ ++++.| +++++++|.++++|++. .+++++
T Consensus 278 Dv~v~pS~-~~E~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~~~~G~~l~~~~d--~~~la~~I~~ll~d~~~-~~~~~~ 353 (380)
T PRK15484 278 DLVVVPSQ-VEEAFCMVAVEAMAAGKPVLASTKGGITEFVLEGITGYHLAEPMT--SDSIISDINRTLADPEL-TQIAEQ 353 (380)
T ss_pred CEEEeCCC-CccccccHHHHHHHcCCCEEEeCCCCcHhhcccCCceEEEeCCCC--HHHHHHHHHHHHcCHHH-HHHHHH
Confidence 99999997 35999999999999999999999999999999999999 567777 99999999999999985 789999
Q ss_pred HHHHHHHHcChhHHHHHHHHHHHHHH
Q 012132 437 GYERVKEIFQEHHMAERIAVVLKEVL 462 (470)
Q Consensus 437 a~~~~~~~fs~~~~~~~~~~~~~~~l 462 (470)
+++.+.++|||++++++++++|++.+
T Consensus 354 ar~~~~~~fsw~~~a~~~~~~l~~~~ 379 (380)
T PRK15484 354 AKDFVFSKYSWEGVTQRFEEQIHNWF 379 (380)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998764
No 23
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=3.2e-40 Score=318.27 Aligned_cols=336 Identities=21% Similarity=0.243 Sum_probs=260.1
Q ss_pred eccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC--------------ChhhHHh
Q 012132 82 HELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--------------GQETINT 147 (470)
Q Consensus 82 ~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 147 (470)
+.+..||+++++.+++++|.++||+|.+++..... ...+...++.++... ......+
T Consensus 5 ~~~~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (355)
T cd03819 5 PALESGGVERGTLELARALVERGHRSLVASAGGRL---------VAELEAEGSRHIKLPFISKNPLRILLNVARLRRLIR 75 (355)
T ss_pred hhhccCcHHHHHHHHHHHHHHcCCEEEEEcCCCch---------HHHHHhcCCeEEEccccccchhhhHHHHHHHHHHHH
Confidence 44666899999999999999999999999864321 112223344332221 1123445
Q ss_pred hcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhhcc
Q 012132 148 ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRI 227 (470)
Q Consensus 148 ~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 227 (470)
..+||+||+|+.........+... ...|+++++|+...... .+...+...+.+++.|....+.+. +.+++
T Consensus 76 ~~~~dii~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~--~~~~~~~~~~~vi~~s~~~~~~~~----~~~~~ 145 (355)
T cd03819 76 EEKVDIVHARSRAPAWSAYLAARR----TRPPFVTTVHGFYSVNF--RYNAIMARGDRVIAVSNFIADHIR----ENYGV 145 (355)
T ss_pred HcCCCEEEECCCchhHHHHHHHHh----cCCCEEEEeCCchhhHH--HHHHHHHhcCEEEEeCHHHHHHHH----HhcCC
Confidence 689999999986544332222211 13678889997643321 233344567788888877766655 36788
Q ss_pred CCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCC
Q 012132 228 KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP 307 (470)
Q Consensus 228 ~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~ 307 (470)
+..++.+||||+|.+.+.+..... .....+|++++.+++.++++++||+.+.||++.+++++..+.+ +.+
T Consensus 146 ~~~k~~~i~ngi~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~-------~~~ 215 (355)
T cd03819 146 DPDRIRVIPRGVDLDRFDPGAVPP---ERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKK-------DDP 215 (355)
T ss_pred ChhhEEEecCCccccccCccccch---HHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHh-------cCC
Confidence 888999999999998876543211 1123367888888888999999999999999999999998865 347
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEe
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG 387 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~ 387 (470)
+++++|+|.+.... .+.+.+.+.++++++.++|+|+|+.+++..+|+.||++++||. +.|++|++++|||++|+|||+
T Consensus 216 ~~~l~ivG~~~~~~-~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~-~~e~~~~~l~EA~a~G~PvI~ 293 (355)
T cd03819 216 DVHLLIVGDAQGRR-FYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSAST-EPEAFGRTAVEAQAMGRPVIA 293 (355)
T ss_pred CeEEEEEECCcccc-hHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCC-CCCCCchHHHHHHhcCCCEEE
Confidence 89999999985432 3566677888889998999999999999999999999999993 289999999999999999999
Q ss_pred cCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHcChhHH
Q 012132 388 TAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHM 450 (470)
Q Consensus 388 s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~ 450 (470)
++.|+..|++.++.+|++++++| +++++++|..++. +++.+.++++++++.+.++|+|+.|
T Consensus 294 ~~~~~~~e~i~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~~~~~ 355 (355)
T cd03819 294 SDHGGARETVRPGETGLLVPPGD--AEALAQALDQILSLLPEGRAKMFAKARMCVETLFSYDRM 355 (355)
T ss_pred cCCCCcHHHHhCCCceEEeCCCC--HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhhccC
Confidence 99999999999988999999988 9999999975555 8999999999999999999999864
No 24
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=8.4e-40 Score=315.66 Aligned_cols=345 Identities=23% Similarity=0.300 Sum_probs=268.7
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC------------Chh
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------------GQE 143 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 143 (470)
||+++.+.+.+||+++++..++++|.+.||+|.+++...... ....+...++.++... ...
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~-------~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 73 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRGE-------LGEELEEAGVPVYCLGKRPGRPDPGALLRLY 73 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcchh-------hhHHHHhcCCeEEEEecccccccHHHHHHHH
Confidence 699999999999999999999999999999999998654321 1222223455443321 112
Q ss_pred hHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc---chhh----hhcccccccceeeeehhhHHH
Q 012132 144 TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---FKLD----YVKHLPLVAGAMIDSHVTAEY 216 (470)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~---~~~~----~~~~~~~~~~~~~~s~~~~~~ 216 (470)
.+.+..+||+||++......+....... . ..++++++.|+..... .... ........+..++.+....+.
T Consensus 74 ~~~~~~~~div~~~~~~~~~~~~~~~~~-~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~ 150 (365)
T cd03807 74 KLIRRLRPDVVHTWMYHADLYGGLAARL-A--GVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSAAAAEY 150 (365)
T ss_pred HHHHhhCCCEEEeccccccHHHHHHHHh-c--CCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeEEeccHHHHHH
Confidence 3445689999999875543332222211 1 2257888888865442 1111 112223445556666666555
Q ss_pred HHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHH
Q 012132 217 WKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESL 296 (470)
Q Consensus 217 ~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~ 296 (470)
+. .++++..++.+++||+|...+.+.... ....+++++++++.++++++|++.+.||++.+++++..+.
T Consensus 151 ~~-----~~~~~~~~~~vi~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~ 219 (365)
T cd03807 151 HQ-----AIGYPPKKIVVIPNGVDTERFSPDLDA------RARLREELGLPEDTFLIGIVARLHPQKDHATLLRAAALLL 219 (365)
T ss_pred HH-----HcCCChhheeEeCCCcCHHhcCCcccc------hHHHHHhcCCCCCCeEEEEecccchhcCHHHHHHHHHHHH
Confidence 54 336777889999999999877654322 3456788999888999999999999999999999999886
Q ss_pred HHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHH-hcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHH
Q 012132 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM-QKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRIT 375 (470)
Q Consensus 297 ~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~-~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~ 375 (470)
+ +.++++|+++|.+. ....++.... ++++.++|.++|..+++..+|+.||++++||. .|++|+++
T Consensus 220 ~-------~~~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~--~e~~~~~~ 285 (365)
T cd03807 220 K-------KFPNARLLLVGDGP-----DRANLELLALKELGLEDKVILLGERSDVPALLNALDVFVLSSL--SEGFPNVL 285 (365)
T ss_pred H-------hCCCeEEEEecCCc-----chhHHHHHHHHhcCCCceEEEccccccHHHHHHhCCEEEeCCc--cccCCcHH
Confidence 5 34889999999983 4455566665 78888999999999999999999999999999 89999999
Q ss_pred HHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Q 012132 376 IEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 455 (470)
Q Consensus 376 lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 455 (470)
+|||+||+|||+++.|+..|++.+ +|++++++| +++++++|.+++++++.+.++++++++++.++|||+++++++.
T Consensus 286 ~Ea~a~g~PvI~~~~~~~~e~~~~--~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 361 (365)
T cd03807 286 LEAMACGLPVVATDVGDNAELVGD--TGFLVPPGD--PEALAEAIEALLADPALRQALGEAARERIEENFSIEAMVEAYE 361 (365)
T ss_pred HHHHhcCCCEEEcCCCChHHHhhc--CCEEeCCCC--HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999999999999966 899999988 9999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 012132 456 VVLK 459 (470)
Q Consensus 456 ~~~~ 459 (470)
++|+
T Consensus 362 ~~y~ 365 (365)
T cd03807 362 ELYR 365 (365)
T ss_pred HHhC
Confidence 9984
No 25
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=5.6e-40 Score=328.42 Aligned_cols=364 Identities=20% Similarity=0.161 Sum_probs=261.0
Q ss_pred EEEEEeeccCC----CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhh------------------hhhhcc
Q 012132 76 LVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEH------------------KMWDRG 133 (470)
Q Consensus 76 kIl~v~~~~~~----~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~------------------~~~~~~ 133 (470)
||++++.++.| ||.+.++..|+++|+++||+|.|+++..+............ .....|
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDG 80 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCC
Confidence 69999998543 66699999999999999999999997655322111000000 001124
Q ss_pred eeeEecCCh------------------------------hhHHh--hcCCcEEEEcccchhhhHHHHhhhc--CCccccc
Q 012132 134 VQVISAKGQ------------------------------ETINT--ALKADLIVLNTAVAGKWLDAVLKED--VPRVLPN 179 (470)
Q Consensus 134 ~~~~~~~~~------------------------------~~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~--~~~~~~~ 179 (470)
++++..... ..+.. ..+||+||+|+...+.....+.... ......+
T Consensus 81 v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~~~~~~l~~~~~~~~~~~~~ 160 (476)
T cd03791 81 VPVYFLDNPDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTGLVPALLKEKYADPFFKNIK 160 (476)
T ss_pred ceEEEEcChHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHHHHHHHHHHhhccccCCCCC
Confidence 444322110 01112 2799999999866544333322221 0112368
Q ss_pred eeeEEeeecccc-chh--------------------------hhhcccccccceeeeehhhHHHHHHh-----hhhhhcc
Q 012132 180 VLWWIHEMRGHY-FKL--------------------------DYVKHLPLVAGAMIDSHVTAEYWKNR-----TRERLRI 227 (470)
Q Consensus 180 ~~~~~h~~~~~~-~~~--------------------------~~~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~~~~ 227 (470)
+++++|+..... +.. .....+...+.++++|....+.+.+. +...+..
T Consensus 161 ~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~ 240 (476)
T cd03791 161 TVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEGLDGLLRA 240 (476)
T ss_pred EEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHHHh
Confidence 999999864211 000 01112345677788887776655431 1112233
Q ss_pred CCCceEEEecCCchhhhhHhhhHH-----------HHHHHHHHHHHHcCCC--CCCeEEEEEeecccCCCHHHHHHHHHH
Q 012132 228 KMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVR--NEDLLFAIINSVSRGKGQDLFLHSFYE 294 (470)
Q Consensus 228 ~~~~i~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~--~~~~~i~~vGrl~~~Kg~~~ll~a~~~ 294 (470)
...++.+|+||+|.+.|.+..+.. .+...+..+++++|++ ++.++|+++||+.++||++.+++|+.+
T Consensus 241 ~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~ 320 (476)
T cd03791 241 RAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPE 320 (476)
T ss_pred ccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEeeccccccHHHHHHHHHH
Confidence 567899999999999988754332 1234467789999985 678999999999999999999999998
Q ss_pred HHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEe-ccc-CCHHHHHHhcCEEEEccCCcccccc
Q 012132 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFV-NKT-LTVAPYLAAIDVLVQNSQAWGECFG 372 (470)
Q Consensus 295 l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~-g~~-~~~~~~~~~aDv~v~pS~~~~E~~g 372 (470)
+.+ .+++|+|+|+|.+ ++.+.++++++++ .+++.+. |.. +.+..+|+.||++++||. .|+||
T Consensus 321 l~~---------~~~~lvi~G~g~~---~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~--~E~~g 384 (476)
T cd03791 321 LLE---------LGGQLVILGSGDP---EYEEALRELAARY--PGRVAVLIGYDEALAHLIYAGADFFLMPSR--FEPCG 384 (476)
T ss_pred HHH---------cCcEEEEEecCCH---HHHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHhCCEEECCCC--CCCCc
Confidence 855 4599999999832 4667888888776 4577765 454 445789999999999999 89999
Q ss_pred hHHHHHHhcCCCEEecCCCCcceeeecCc------eeeeecCCCCChHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHH
Q 012132 373 RITIEAMAFQLPVLGTAAGGTTEIVVNGT------TGLLHPVGKEGITPLAKNIVKLAT---HVERRLTMGKRGYERVKE 443 (470)
Q Consensus 373 ~~~lEAma~G~PvI~s~~~g~~e~v~~~~------~G~l~~~~d~~~~~la~~i~~ll~---~~~~~~~~~~~a~~~~~~ 443 (470)
++++|||+||+|||+++.||+.|++.++. +|+++++.| +++++++|.++++ +++.+.++++++++ +
T Consensus 385 l~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~--~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~---~ 459 (476)
T cd03791 385 LTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYN--ADALLAALRRALALYRDPEAWRKLQRNAMA---Q 459 (476)
T ss_pred HHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCC--HHHHHHHHHHHHHHHcCHHHHHHHHHHHhc---c
Confidence 99999999999999999999999999987 999999998 9999999999885 67777777777654 5
Q ss_pred HcChhHHHHHHHHHHHH
Q 012132 444 IFQEHHMAERIAVVLKE 460 (470)
Q Consensus 444 ~fs~~~~~~~~~~~~~~ 460 (470)
.|||+.++++|+++|++
T Consensus 460 ~fsw~~~a~~~~~~y~~ 476 (476)
T cd03791 460 DFSWDRSAKEYLELYRS 476 (476)
T ss_pred CCChHHHHHHHHHHHhC
Confidence 69999999999999963
No 26
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=3e-39 Score=324.46 Aligned_cols=372 Identities=17% Similarity=0.177 Sum_probs=253.6
Q ss_pred ccccEEEEEeeccC---C-------Cch-hHHHHHHHHHH--------HhCCc----eEEEEecCCCCCchh-HHHhhhh
Q 012132 72 MKSKLVLLVSHELS---L-------SGG-PLLLMELAFLL--------RGVGT----KVNWITIQKPSEEDE-VIYSLEH 127 (470)
Q Consensus 72 ~~~~kIl~v~~~~~---~-------~G~-~~~~~~l~~~L--------~~~G~----~V~v~~~~~~~~~~~-~~~~~~~ 127 (470)
.|.|||++++.... . .|| ..++.+++++| +++|| +|+|+|...+..... ....++.
T Consensus 253 p~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~ 332 (784)
T TIGR02470 253 PMVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEK 332 (784)
T ss_pred CccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcccccccccccc
Confidence 35689999998762 1 344 68999999975 68999 777999544321110 0000111
Q ss_pred hhhhcceeeEecC--C---------h-----------------hhHHh--hcCCcEEEEcccchhhhHHHHhhhcCCccc
Q 012132 128 KMWDRGVQVISAK--G---------Q-----------------ETINT--ALKADLIVLNTAVAGKWLDAVLKEDVPRVL 177 (470)
Q Consensus 128 ~~~~~~~~~~~~~--~---------~-----------------~~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~ 177 (470)
.....++.+++.+ . . +.+.. ..+||+||+|....+... ..++... .
T Consensus 333 ~~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva-~lla~~l---g 408 (784)
T TIGR02470 333 VYGTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVA-SLLARKL---G 408 (784)
T ss_pred ccCCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHH-HHHHHhc---C
Confidence 1112344443321 0 0 01111 247999999986655443 3333222 2
Q ss_pred cceeeEEeeeccc-------cch---hh---------hhcccccccceeeeehhhHHHHHHhhh-----------hhh--
Q 012132 178 PNVLWWIHEMRGH-------YFK---LD---------YVKHLPLVAGAMIDSHVTAEYWKNRTR-----------ERL-- 225 (470)
Q Consensus 178 ~~~~~~~h~~~~~-------~~~---~~---------~~~~~~~~~~~~~~s~~~~~~~~~~~~-----------~~~-- 225 (470)
.|.+.+.|..... ++. .. ....+..++.+++.+..-.....+... .-+
T Consensus 409 VP~v~t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~v 488 (784)
T TIGR02470 409 VTQCTIAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRV 488 (784)
T ss_pred CCEEEECCcchhhcccccccccccchhHHHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeee
Confidence 5777788854210 010 00 112234456666666422111011100 011
Q ss_pred --cc--CCCceEEEecCCchhhhhHhhhHHHHHH-----------HHHHHHHHcCC--CCCCeEEEEEeecccCCCHHHH
Q 012132 226 --RI--KMPDTYVVHLGNSKELMEVAEDNVAKRV-----------LREHVRESLGV--RNEDLLFAIINSVSRGKGQDLF 288 (470)
Q Consensus 226 --~~--~~~~i~vi~ngvd~~~~~~~~~~~~~~~-----------~~~~~r~~~~~--~~~~~~i~~vGrl~~~Kg~~~l 288 (470)
|+ +.+|+.|||+|+|.+.|.|......+.. .+.+.++.+|+ ++++++|+++||+.+.||++.+
T Consensus 489 vnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL~~~KGid~L 568 (784)
T TIGR02470 489 VHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNKPIIFSMARLDRVKNLTGL 568 (784)
T ss_pred ecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCCCCCcEEEEEeCCCccCCHHHH
Confidence 22 5678999999999998876543211100 12334577776 5677899999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCceEEEEEeCCCCc----Ch---HHHHHHHHHHHhcCCCCcEEEeccc---CCHHHHHH---
Q 012132 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNA----QT---KFESELRNYVMQKKIQDRVHFVNKT---LTVAPYLA--- 355 (470)
Q Consensus 289 l~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~----~~---~~~~~l~~~~~~~~l~~~V~~~g~~---~~~~~~~~--- 355 (470)
++|+.++.+ + .++++|+|+|++... +. ...+++.++++++++.++|.|+|.+ .++.++|+
T Consensus 569 IeA~~~l~~-l------~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iA 641 (784)
T TIGR02470 569 VECYGRSPK-L------RELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIA 641 (784)
T ss_pred HHHHHHhHh-h------CCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhh
Confidence 999987643 1 157899999986421 11 2456788899999999999999964 45556664
Q ss_pred -hcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHH----hCHHHH
Q 012132 356 -AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA----THVERR 430 (470)
Q Consensus 356 -~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll----~~~~~~ 430 (470)
.+|+||+||. +|+||++++|||+||+|||+|+.||+.|+|.++.+|+++++.| +++++++|.+++ .|++.+
T Consensus 642 d~adVfV~PS~--~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV~dg~tGfLVdp~D--~eaLA~aL~~ll~kll~dp~~~ 717 (784)
T TIGR02470 642 DTKGIFVQPAL--YEAFGLTVLEAMTCGLPTFATRFGGPLEIIQDGVSGFHIDPYH--GEEAAEKIVDFFEKCDEDPSYW 717 (784)
T ss_pred ccCcEEEECCc--ccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCC--HHHHHHHHHHHHHHhcCCHHHH
Confidence 3479999999 9999999999999999999999999999999999999999999 999999999876 589999
Q ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHH
Q 012132 431 LTMGKRGYERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 431 ~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 458 (470)
+++++++++++.++|||+.++++++++.
T Consensus 718 ~~ms~~a~~rV~~~FSW~~~A~~ll~l~ 745 (784)
T TIGR02470 718 QKISQGGLQRIYEKYTWKIYSERLLTLA 745 (784)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999999999998775
No 27
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=7.3e-40 Score=319.60 Aligned_cols=334 Identities=18% Similarity=0.209 Sum_probs=238.9
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCCh-------------
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ------------- 142 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 142 (470)
||||++..+|. ....|+++|.++||+|+++|......... |+.++.....
T Consensus 1 ~il~~~~~~p~-----~~~~la~~L~~~G~~v~~~~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~~~~~ 63 (396)
T cd03818 1 RILFVHQNFPG-----QFRHLAPALAAQGHEVVFLTEPNAAPPPG------------GVRVVRYRPPRGPTSGTHPYLRE 63 (396)
T ss_pred CEEEECCCCch-----hHHHHHHHHHHCCCEEEEEecCCCCCCCC------------CeeEEEecCCCCCCCCCCccchh
Confidence 68999988862 46789999999999999999665532111 3333322110
Q ss_pred ---------------hhH-HhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEE------eeeccccc----h---
Q 012132 143 ---------------ETI-NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWI------HEMRGHYF----K--- 193 (470)
Q Consensus 143 ---------------~~~-~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~~~~~----~--- 193 (470)
..+ .+..+||+||+|..+..... ++...+. .+++.+. |+....+. .
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~~---l~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (396)
T cd03818 64 FEEAVLRGQAVARALLALRAKGFRPDVIVAHPGWGETLF---LKDVWPD--APLIGYFEFYYRAEGADVGFDPEFPPSLD 138 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccchhhh---HHHhCCC--CCEEEEEeeeecCCCCCCCCCCCCCCchh
Confidence 011 23368999999986543222 2222221 2333322 22111110 0
Q ss_pred --hh-------hhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHc
Q 012132 194 --LD-------YVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESL 264 (470)
Q Consensus 194 --~~-------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~ 264 (470)
.. ....+...+.+++.|....+.+.+ .+ .+++.|||||+|.+.|.+.+.. ....+...
T Consensus 139 ~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~----~~---~~ki~vI~ngvd~~~f~~~~~~------~~~~~~~~ 205 (396)
T cd03818 139 DALRLRNRNALILLALAQADAGVSPTRWQRSTFPA----EL---RSRISVIHDGIDTDRLRPDPQA------RLRLPNGR 205 (396)
T ss_pred HHHHHHHhhhHhHHHHHhCCEEECCCHHHHhhCcH----hh---ccceEEeCCCccccccCCCchh------hhcccccc
Confidence 01 112355677788887777665443 22 2679999999999988765321 11223333
Q ss_pred CCCCCCeEEEEEee-cccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcC---hHH-HHHHHHHHHhcCC--
Q 012132 265 GVRNEDLLFAIINS-VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ---TKF-ESELRNYVMQKKI-- 337 (470)
Q Consensus 265 ~~~~~~~~i~~vGr-l~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~---~~~-~~~l~~~~~~~~l-- 337 (470)
+++++.++++++|| +.+.||++.+++|++.+.+ +.|+++|+|+|++.+.. ++. ....+++.++++.
T Consensus 206 ~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~-------~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 278 (396)
T cd03818 206 VLTPGDEVITFVARNLEPYRGFHVFMRALPRLLR-------ARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRL 278 (396)
T ss_pred cCCCCCeEEEEECCCcccccCHHHHHHHHHHHHH-------HCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhccc
Confidence 45567788999998 9999999999999998865 45899999999753110 000 1122223333332
Q ss_pred -CCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChH
Q 012132 338 -QDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGIT 414 (470)
Q Consensus 338 -~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~ 414 (470)
.++|+|+|++ +++..+|+.||++++||. .|++|++++||||||+|||+|+.||..|++.++.+|++++++| ++
T Consensus 279 ~~~~V~f~G~v~~~~~~~~l~~adv~v~~s~--~e~~~~~llEAmA~G~PVIas~~~g~~e~i~~~~~G~lv~~~d--~~ 354 (396)
T cd03818 279 DLSRVHFLGRVPYDQYLALLQVSDVHVYLTY--PFVLSWSLLEAMACGCLVVGSDTAPVREVITDGENGLLVDFFD--PD 354 (396)
T ss_pred CcceEEEeCCCCHHHHHHHHHhCcEEEEcCc--ccccchHHHHHHHCCCCEEEcCCCCchhhcccCCceEEcCCCC--HH
Confidence 4789999986 689999999999999999 9999999999999999999999999999999999999999998 99
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Q 012132 415 PLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 455 (470)
Q Consensus 415 ~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 455 (470)
+++++|.++++|++.+.+|++++++++.++|||+.++++|.
T Consensus 355 ~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~~~~~~~~ 395 (396)
T cd03818 355 ALAAAVIELLDDPARRARLRRAARRTALRYDLLSVCLPRQL 395 (396)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 99999999999999999999999999999999999999886
No 28
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=8.6e-40 Score=314.71 Aligned_cols=342 Identities=12% Similarity=0.142 Sum_probs=245.3
Q ss_pred cEEEEEeeccC-CCchhHHHHHHHHHHHhC--CceEEEEecCCCCCchhHHHhhhh--hhhhcceeeEe----cCChhhH
Q 012132 75 KLVLLVSHELS-LSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEH--KMWDRGVQVIS----AKGQETI 145 (470)
Q Consensus 75 ~kIl~v~~~~~-~~G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~ 145 (470)
|||+++++.++ .||+|+++.+++++|.++ ||+|.+++......... ...... ......+.... ......+
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAW-LKEIKYAQSFSNIKLSFLRRAKHVYNFSKW 79 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHH-HHhcchhcccccchhhhhcccHHHHHHHHH
Confidence 79999998765 488899999999999999 89999988654422111 000000 00000111110 1123355
Q ss_pred HhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhh
Q 012132 146 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERL 225 (470)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 225 (470)
.+..+||+||+|++....+... ..... ....+++.+.|......... ....+...+.+++.|..+.+.+. .+
T Consensus 80 l~~~~~Dii~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~h~~~~~~~~~-~~~~~~~~d~~i~~S~~~~~~~~-----~~ 151 (359)
T PRK09922 80 LKETQPDIVICIDVISCLYANK-ARKKS-GKQFKIFSWPHFSLDHKKHA-ECKKITCADYHLAISSGIKEQMM-----AR 151 (359)
T ss_pred HHhcCCCEEEEcCHHHHHHHHH-HHHHh-CCCCeEEEEecCcccccchh-hhhhhhcCCEEEEcCHHHHHHHH-----Hc
Confidence 6778999999998655433222 22211 11124555666432111111 11223566778888877766554 34
Q ss_pred ccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecc--cCCCHHHHHHHHHHHHHHHHhhc
Q 012132 226 RIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS--RGKGQDLFLHSFYESLELIKEKK 303 (470)
Q Consensus 226 ~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~--~~Kg~~~ll~a~~~l~~~l~~~~ 303 (470)
+++.+++.+||||+|.+.+..... -..++++++++||+. +.||++.+++++.++.
T Consensus 152 ~~~~~ki~vi~N~id~~~~~~~~~----------------~~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~------- 208 (359)
T PRK09922 152 GISAQRISVIYNPVEIKTIIIPPP----------------ERDKPAVFLYVGRLKFEGQKNVKELFDGLSQTT------- 208 (359)
T ss_pred CCCHHHEEEEcCCCCHHHccCCCc----------------ccCCCcEEEEEEEEecccCcCHHHHHHHHHhhC-------
Confidence 677788999999999765432110 013467899999996 4699999999998762
Q ss_pred ccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccC----CHHHHHHhcCEEEEccCCcccccchHHHHHH
Q 012132 304 LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL----TVAPYLAAIDVLVQNSQAWGECFGRITIEAM 379 (470)
Q Consensus 304 ~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~----~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAm 379 (470)
++++|+|+|+| +..+.++++++++++.++|+|+|+++ ++.++|+.+|++|+||. .|+||++++|||
T Consensus 209 ---~~~~l~ivG~g-----~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~--~Egf~~~~lEAm 278 (359)
T PRK09922 209 ---GEWQLHIIGDG-----SDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSK--FEGFPMTLLEAM 278 (359)
T ss_pred ---CCeEEEEEeCC-----ccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCc--ccCcChHHHHHH
Confidence 47999999999 56888999999999999999999864 46777888999999999 999999999999
Q ss_pred hcCCCEEecC-CCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Q 012132 380 AFQLPVLGTA-AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 380 a~G~PvI~s~-~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 458 (470)
|||+|||+++ .||..|++.++.+|++++++| +++++++|.++++|++.+. .++.....++|+.+++.+++.++|
T Consensus 279 a~G~Pvv~s~~~~g~~eiv~~~~~G~lv~~~d--~~~la~~i~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 353 (359)
T PRK09922 279 SYGIPCISSDCMSGPRDIIKPGLNGELYTPGN--IDEFVGKLNKVISGEVKYQ---HDAIPNSIERFYEVLYFKNLNNAL 353 (359)
T ss_pred HcCCCEEEeCCCCChHHHccCCCceEEECCCC--HHHHHHHHHHHHhCcccCC---HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999 899999999999999999998 9999999999999987541 233333445588899999999999
Q ss_pred HHHHH
Q 012132 459 KEVLK 463 (470)
Q Consensus 459 ~~~l~ 463 (470)
..+++
T Consensus 354 ~~~~~ 358 (359)
T PRK09922 354 FSKLQ 358 (359)
T ss_pred HHHhc
Confidence 98764
No 29
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=100.00 E-value=3.9e-39 Score=312.22 Aligned_cols=331 Identities=20% Similarity=0.206 Sum_probs=254.8
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceee-----------------Ee
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-----------------IS 138 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~ 138 (470)
||+++++.+.+. +++++.++++.|. ||+|++++.......... ....++.. ..
T Consensus 1 ~~~~~~~~~~~~-~e~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (367)
T cd05844 1 RVLIFRPLLLAP-SETFVRNQAEALR--RFRPVYVGGRRLGPAPLG-------ALAVRLADLAGGKAGLRLGALRLLTGS 70 (367)
T ss_pred CEEEEeCCCCCC-chHHHHHHHHhcc--cCCcEEEEeeccCCCCCc-------ccceeeeecccchhHHHHHHHHhcccc
Confidence 578888877665 7899999999995 788888875433221100 00111111 11
Q ss_pred cCChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc------------hhhhhcccccccce
Q 012132 139 AKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF------------KLDYVKHLPLVAGA 206 (470)
Q Consensus 139 ~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~------------~~~~~~~~~~~~~~ 206 (470)
......+.+..+||+||+|....+.....+.+. ...|++++.|+...... .......+...+.+
T Consensus 71 ~~~~~~~~~~~~~dvvh~~~~~~~~~~~~~~~~----~~~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 146 (367)
T cd05844 71 APQLRRLLRRHRPDLVHAHFGFDGVYALPLARR----LGVPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALF 146 (367)
T ss_pred ccHHHHHHHhhCCCEEEeccCchHHHHHHHHHH----cCCCEEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEE
Confidence 122233466789999999976544443333322 22578888886432111 11122334566788
Q ss_pred eeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHH
Q 012132 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQD 286 (470)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~ 286 (470)
++.|....+.+.+ ++++..++.+++||+|.+.+.+... ..++.+++++|++.+.||++
T Consensus 147 i~~s~~~~~~~~~-----~~~~~~~i~vi~~g~d~~~~~~~~~-----------------~~~~~~i~~~G~~~~~K~~~ 204 (367)
T cd05844 147 IAVSQFIRDRLLA-----LGFPPEKVHVHPIGVDTAKFTPATP-----------------ARRPPRILFVGRFVEKKGPL 204 (367)
T ss_pred EECCHHHHHHHHH-----cCCCHHHeEEecCCCCHHhcCCCCC-----------------CCCCcEEEEEEeeccccChH
Confidence 8888877666553 3677788999999999887754321 14567899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEcc
Q 012132 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNS 364 (470)
Q Consensus 287 ~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS 364 (470)
.+++|+..+.+ +.++++|+|+|+| ++.++++++++++++.++|+|+|++ +++..+|+.+|++++||
T Consensus 205 ~li~a~~~l~~-------~~~~~~l~ivG~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps 272 (367)
T cd05844 205 LLLEAFARLAR-------RVPEVRLVIIGDG-----PLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPS 272 (367)
T ss_pred HHHHHHHHHHH-------hCCCeEEEEEeCc-----hHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECc
Confidence 99999998865 3489999999998 6788999999999999999999986 77999999999999999
Q ss_pred CC----cccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012132 365 QA----WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYER 440 (470)
Q Consensus 365 ~~----~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~ 440 (470)
.. ..|+||++++|||+||+|||+++.++..|++.++.+|++++++| +++++++|.++++|++.+.+++++++++
T Consensus 273 ~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~~~~a~~~ 350 (367)
T cd05844 273 VTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPEAVEDGETGLLVPEGD--VAALAAALGRLLADPDLRARMGAAGRRR 350 (367)
T ss_pred ccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchhheecCCeeEEECCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 61 14999999999999999999999999999999999999999988 9999999999999999999999999999
Q ss_pred HHHHcChhHHHHHHHH
Q 012132 441 VKEIFQEHHMAERIAV 456 (470)
Q Consensus 441 ~~~~fs~~~~~~~~~~ 456 (470)
+.++|||+.+++++.+
T Consensus 351 ~~~~~s~~~~~~~l~~ 366 (367)
T cd05844 351 VEERFDLRRQTAKLEA 366 (367)
T ss_pred HHHHCCHHHHHHHHhc
Confidence 9999999999999875
No 30
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=7.2e-39 Score=309.25 Aligned_cols=329 Identities=17% Similarity=0.184 Sum_probs=248.3
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC-----------Chhh
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-----------GQET 144 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 144 (470)
||+++++.+..||+++++.+++++|.+.||+|++++....... ........++.++... ....
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGD------YDDEIEKLGGKIYYIPARKKNPLKYFKKLYK 74 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCcc------hHHHHHHcCCeEEEecCCCccHHHHHHHHHH
Confidence 6999999887788899999999999999999999996554321 1222333455444221 1123
Q ss_pred HHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc--hhh------hhcccccccceeeeehhhHHH
Q 012132 145 INTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF--KLD------YVKHLPLVAGAMIDSHVTAEY 216 (470)
Q Consensus 145 ~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~--~~~------~~~~~~~~~~~~~~s~~~~~~ 216 (470)
+.+..+||+||+|......+.....+. . ..+..+.+.|+...... ... ........+.+++.+....+.
T Consensus 75 ~~~~~~~Dvv~~~~~~~~~~~~~~~~~-~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~ 151 (358)
T cd03812 75 LIKKNKYDIVHVHGSSASGFILLAAKK-A--GVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKW 151 (358)
T ss_pred HHhcCCCCEEEEeCcchhHHHHHHHhh-C--CCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHH
Confidence 345689999999987643333322222 1 11344566776432211 111 112234556677777776655
Q ss_pred HHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHH
Q 012132 217 WKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESL 296 (470)
Q Consensus 217 ~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~ 296 (470)
+.. . ....++.+||||+|.+.+.+.... +.. +++.+...++++|+++||+.+.||++.+++|+..+.
T Consensus 152 ~~~----~--~~~~~~~vi~ngvd~~~~~~~~~~------~~~-~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~ 218 (358)
T cd03812 152 LFG----K--VKNKKFKVIPNGIDLEKFIFNEEI------RKK-RRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAELL 218 (358)
T ss_pred HHh----C--CCcccEEEEeccCcHHHcCCCchh------hhH-HHHcCCCCCCEEEEEEeccccccChHHHHHHHHHHH
Confidence 543 2 456789999999999887654321 112 566777788899999999999999999999999986
Q ss_pred HHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHH
Q 012132 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITI 376 (470)
Q Consensus 297 ~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~l 376 (470)
+ +.++++++|+|+| +..+.+++.++++++.++|.++|+.+++.++|+.||++|+||. .|++|++++
T Consensus 219 ~-------~~~~~~l~ivG~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~--~E~~~~~~l 284 (358)
T cd03812 219 K-------KNPNAKLLLVGDG-----ELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDVFLFPSL--YEGLPLVLI 284 (358)
T ss_pred H-------hCCCeEEEEEeCC-----chHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEeccc--ccCCCHHHH
Confidence 5 4589999999998 5778899999999999999999999999999999999999999 899999999
Q ss_pred HHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 012132 377 EAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE 443 (470)
Q Consensus 377 EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~ 443 (470)
|||++|+|||+|+.||..|++.+ ..|++..+++ +++++++|.++++|++.++.++..+......
T Consensus 285 EAma~G~PvI~s~~~~~~~~i~~-~~~~~~~~~~--~~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~ 348 (358)
T cd03812 285 EAQASGLPCILSDTITKEVDLTD-LVKFLSLDES--PEIWAEEILKLKSEDRRERSSESIKKKGLDA 348 (358)
T ss_pred HHHHhCCCEEEEcCCchhhhhcc-CccEEeCCCC--HHHHHHHHHHHHhCcchhhhhhhhhhccchh
Confidence 99999999999999999999987 4667766666 8999999999999999999888877765543
No 31
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=100.00 E-value=1.2e-38 Score=308.51 Aligned_cols=326 Identities=21% Similarity=0.219 Sum_probs=249.0
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCcEE
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLI 154 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV 154 (470)
||||++++....||+++++..++++|.++||+|++++.... .........+||+|
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~-------------------------~~~~~~~~~~~dii 55 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK-------------------------ALISKIEIINADIV 55 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc-------------------------hhhhChhcccCCEE
Confidence 79999998766688899999999999999999999995533 12223446799999
Q ss_pred EEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch------------------------------hhhh---ccc-
Q 012132 155 VLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK------------------------------LDYV---KHL- 200 (470)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~------------------------------~~~~---~~~- 200 (470)
|+|......+....+.... ...|+++++|+....... ..+. ..+
T Consensus 56 h~~~~~~~~~~~~~~~~~~--~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (365)
T cd03825 56 HLHWIHGGFLSIEDLSKLL--DRKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAWA 133 (365)
T ss_pred EEEccccCccCHHHHHHHH--cCCCEEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHhc
Confidence 9987543332222222111 125788999975321100 0000 000
Q ss_pred ccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecc
Q 012132 201 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 280 (470)
Q Consensus 201 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~ 280 (470)
.....+++.+....+.+. +.+.++..++.++|||+|.+.+.+.. +...++.++++.+..++++.|+..
T Consensus 134 ~~~~~~v~~s~~~~~~~~----~~~~~~~~~~~vi~ngi~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~ 201 (365)
T cd03825 134 DLNLTIVAPSRWLADCAR----SSSLFKGIPIEVIPNGIDTTIFRPRD--------KREARKRLGLPADKKIILFGAVGG 201 (365)
T ss_pred cCCcEEEehhHHHHHHHH----hccccCCCceEEeCCCCcccccCCCc--------HHHHHHHhCCCCCCeEEEEEecCC
Confidence 112334555555444433 34456778999999999998875543 345677788888888887777775
Q ss_pred c--CCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccC---CHHHHHH
Q 012132 281 R--GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL---TVAPYLA 355 (470)
Q Consensus 281 ~--~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~---~~~~~~~ 355 (470)
. .||++.++++++.+.+. ..++++++++|++.. ... .++.++|.++|+.. ++..+|+
T Consensus 202 ~~~~K~~~~ll~a~~~l~~~------~~~~~~~~i~G~~~~-----~~~-------~~~~~~v~~~g~~~~~~~~~~~~~ 263 (365)
T cd03825 202 TDPRKGFDELIEALKRLAER------WKDDIELVVFGASDP-----EIP-------PDLPFPVHYLGSLNDDESLALIYS 263 (365)
T ss_pred CccccCHHHHHHHHHHhhhc------cCCCeEEEEeCCCch-----hhh-------ccCCCceEecCCcCCHHHHHHHHH
Confidence 5 89999999999987541 137899999999832 111 14567899999864 6889999
Q ss_pred hcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHH
Q 012132 356 AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 435 (470)
Q Consensus 356 ~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~ 435 (470)
.||++++||. .|+||++++|||++|+|||+++.|+..|++.++.+|++++..| +++++++|.++++|++.+.++++
T Consensus 264 ~ad~~l~ps~--~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~--~~~~~~~l~~l~~~~~~~~~~~~ 339 (365)
T cd03825 264 AADVFVVPSL--QENFPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGD--PEDLAEGIEWLLADPDEREELGE 339 (365)
T ss_pred hCCEEEeccc--cccccHHHHHHHhcCCCEEEecCCCChhheeCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHH
Confidence 9999999999 8999999999999999999999999999999988999999988 99999999999999999999999
Q ss_pred HHHHHHHHHcChhHHHHHHHHHHHHH
Q 012132 436 RGYERVKEIFQEHHMAERIAVVLKEV 461 (470)
Q Consensus 436 ~a~~~~~~~fs~~~~~~~~~~~~~~~ 461 (470)
++++.+.++|||++++++|.++|+++
T Consensus 340 ~~~~~~~~~~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 340 AARELAENEFDSRVQAKRYLSLYEEL 365 (365)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999863
No 32
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=1.4e-38 Score=311.71 Aligned_cols=348 Identities=22% Similarity=0.218 Sum_probs=256.6
Q ss_pred EEEEEeeccC--CCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC------------
Q 012132 76 LVLLVSHELS--LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------------ 141 (470)
Q Consensus 76 kIl~v~~~~~--~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 141 (470)
++++.+...+ .||.++++.+|+++|+++||+|+|++.......... .....++.++....
T Consensus 8 ~~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (398)
T cd03800 8 HGSPLAQPGGADTGGQNVYVLELARALARLGHEVDIFTRRIDDALPPI------VELAPGVRVVRVPAGPAEYLPKEELW 81 (398)
T ss_pred cccccccCCCCCCCceeehHHHHHHHHhccCceEEEEEecCCcccCCc------cccccceEEEecccccccCCChhhcc
Confidence 3444443333 267799999999999999999999995443221100 01112333322110
Q ss_pred ---------hhhHHhhc--CCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchh--------------hh
Q 012132 142 ---------QETINTAL--KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL--------------DY 196 (470)
Q Consensus 142 ---------~~~~~~~~--~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~--------------~~ 196 (470)
.....+.. +||+||+|....+.....+.+. ...|++++.|+........ ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (398)
T cd03800 82 PYLDEFADDLLRFLRREGGRPDLIHAHYWDSGLVALLLARR----LGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAE 157 (398)
T ss_pred hhHHHHHHHHHHHHHhcCCCccEEEEecCccchHHHHHHhh----cCCceEEEeecccccCCcccccccccchhhhhhHH
Confidence 01122334 9999999975544333222221 1256778888753211100 01
Q ss_pred hcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEE
Q 012132 197 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 276 (470)
Q Consensus 197 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~v 276 (470)
...+...+.+++.|....+.+.+ .++.+..++.+||||+|.+.+.+.... ...++.++.+.++++|+++
T Consensus 158 ~~~~~~ad~ii~~s~~~~~~~~~----~~~~~~~~~~vi~ng~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~ 226 (398)
T cd03800 158 ERLLRAADRVIASTPQEAEELYS----LYGAYPRRIRVVPPGVDLERFTPYGRA-------EARRARLLRDPDKPRILAV 226 (398)
T ss_pred HHHHhhCCEEEEcCHHHHHHHHH----HccccccccEEECCCCCccceecccch-------hhHHHhhccCCCCcEEEEE
Confidence 22344567777777776555543 445556679999999999887654322 1125556666788999999
Q ss_pred eecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcCh-HHHHHHHHHHHhcCCCCcEEEeccc--CCHHHH
Q 012132 277 NSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT-KFESELRNYVMQKKIQDRVHFVNKT--LTVAPY 353 (470)
Q Consensus 277 Grl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~-~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~ 353 (470)
||+.+.||++.+++|+..+.+ +.++++++++|++..... .....++++++++++.++|.|+|++ +++..+
T Consensus 227 gr~~~~k~~~~ll~a~~~l~~-------~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 299 (398)
T cd03800 227 GRLDPRKGIDTLIRAYAELPE-------LRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPAL 299 (398)
T ss_pred cccccccCHHHHHHHHHHHHH-------hCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHH
Confidence 999999999999999998865 347899999998854322 2345678888999999999999986 689999
Q ss_pred HHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHH
Q 012132 354 LAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTM 433 (470)
Q Consensus 354 ~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~ 433 (470)
|+.||++++||. .|++|++++|||++|+|||+++.+|..|++.++++|++++++| +++++++|.++++|++.++++
T Consensus 300 ~~~adi~l~ps~--~e~~~~~l~Ea~a~G~Pvi~s~~~~~~e~i~~~~~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~ 375 (398)
T cd03800 300 YRAADVFVNPAL--YEPFGLTALEAMACGLPVVATAVGGPRDIVVDGVTGLLVDPRD--PEALAAALRRLLTDPALRRRL 375 (398)
T ss_pred HHhCCEEEeccc--ccccCcHHHHHHhcCCCEEECCCCCHHHHccCCCCeEEeCCCC--HHHHHHHHHHHHhCHHHHHHH
Confidence 999999999999 8999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHHHHHcChhHHHHHHH
Q 012132 434 GKRGYERVKEIFQEHHMAERIA 455 (470)
Q Consensus 434 ~~~a~~~~~~~fs~~~~~~~~~ 455 (470)
++++++++.++|||+.++++|+
T Consensus 376 ~~~a~~~~~~~~s~~~~~~~~~ 397 (398)
T cd03800 376 SRAGLRRARARYTWERVAARLL 397 (398)
T ss_pred HHHHHHHHHHhCCHHHHHHHHh
Confidence 9999999999999999999886
No 33
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.2e-37 Score=304.08 Aligned_cols=352 Identities=16% Similarity=0.141 Sum_probs=250.9
Q ss_pred ccEEEEEeeccCCC-chhHHHHHHHHHHHhCCc--eEEEEecCCCCCchhHHHhhhhhhhhcce------eeEec---C-
Q 012132 74 SKLVLLVSHELSLS-GGPLLLMELAFLLRGVGT--KVNWITIQKPSEEDEVIYSLEHKMWDRGV------QVISA---K- 140 (470)
Q Consensus 74 ~~kIl~v~~~~~~~-G~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~---~- 140 (470)
+++|+|++++...| |||+++.+.+.+|.+.|+ +|+++|.+.+....+. +.......++ .++.. .
T Consensus 33 ~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~---l~~~~~~~~i~~~~~~~~v~l~~~~~ 109 (463)
T PLN02949 33 KRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSL---AARARDRFGVELLSPPKVVHLRKRKW 109 (463)
T ss_pred CcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHH---HHHHHhhcceecCCCceEEEeccccc
Confidence 56999999999876 779999999999999998 7788886654433221 1111122333 11111 0
Q ss_pred ----Ch----------h------hHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc---------
Q 012132 141 ----GQ----------E------TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--------- 191 (470)
Q Consensus 141 ----~~----------~------~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~--------- 191 (470)
.+ + .......|| |++.+...+.... +++. . ..++++++|......
T Consensus 110 ~~~~~~~~~t~~~~~~~~~~l~~~~~~~~~p~-v~vDt~~~~~~~p-l~~~-~---~~~v~~yvH~p~~~~dm~~~v~~~ 183 (463)
T PLN02949 110 IEEETYPRFTMIGQSLGSVYLAWEALCKFTPL-YFFDTSGYAFTYP-LARL-F---GCKVVCYTHYPTISSDMISRVRDR 183 (463)
T ss_pred cccccCCceehHHHHHHHHHHHHHHHHhcCCC-EEEeCCCcccHHH-HHHh-c---CCcEEEEEeCCcchHHHHHHHhhc
Confidence 00 0 111123555 5554432111111 1111 1 258899999432110
Q ss_pred ------------------chhhhh--------cccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhh
Q 012132 192 ------------------FKLDYV--------KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELME 245 (470)
Q Consensus 192 ------------------~~~~~~--------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~ 245 (470)
.+..+. ......+.++++|..+.+.+.+ .++. .+++.+++||+|.+.+.
T Consensus 184 ~~~~~~~~~~a~~~~~~~~k~~Y~~~~~~l~~~~~~~ad~ii~nS~~t~~~l~~----~~~~-~~~i~vvyp~vd~~~~~ 258 (463)
T PLN02949 184 SSMYNNDASIARSFWLSTCKILYYRAFAWMYGLVGRCAHLAMVNSSWTKSHIEA----LWRI-PERIKRVYPPCDTSGLQ 258 (463)
T ss_pred ccccCccchhhccchhHHHHHHHHHHHHHHHHHHcCCCCEEEECCHHHHHHHHH----HcCC-CCCeEEEcCCCCHHHcc
Confidence 001111 1124567788888888776654 3333 35789999999987653
Q ss_pred HhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCc-ChHH
Q 012132 246 VAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-QTKF 324 (470)
Q Consensus 246 ~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~-~~~~ 324 (470)
..+. ..+.+...++++||+.++||++.+++|++++.+.+.+ +.++++|+|+|++... +.++
T Consensus 259 ~~~~---------------~~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~---~~~~~~LvIvG~~~~~~~~~~ 320 (463)
T PLN02949 259 ALPL---------------ERSEDPPYIISVAQFRPEKAHALQLEAFALALEKLDA---DVPRPKLQFVGSCRNKEDEER 320 (463)
T ss_pred cCCc---------------cccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhccc---cCCCcEEEEEeCCCCcccHHH
Confidence 2110 0113456789999999999999999999988654432 2378999999997432 2346
Q ss_pred HHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcc-eeeec--
Q 012132 325 ESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTT-EIVVN-- 399 (470)
Q Consensus 325 ~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~-e~v~~-- 399 (470)
.+++++++++++++++|+|+|+. +++.++|+.||++++||. .|+||++++|||++|+|||+++.||.. |++.+
T Consensus 321 ~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~--~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~ 398 (463)
T PLN02949 321 LQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMI--DEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDED 398 (463)
T ss_pred HHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCc--cCCCChHHHHHHHcCCcEEEeCCCCCcceeeecCC
Confidence 78899999999999999999986 789999999999999998 999999999999999999999999864 77765
Q ss_pred -CceeeeecCCCCChHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHh
Q 012132 400 -GTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 464 (470)
Q Consensus 400 -~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~ 464 (470)
+.+|++++ | +++++++|.++++ +++.+++|++++++++ ++|||+++++++.+.|++++..
T Consensus 399 ~g~tG~l~~--~--~~~la~ai~~ll~~~~~~r~~m~~~ar~~~-~~FS~e~~~~~~~~~i~~l~~~ 460 (463)
T PLN02949 399 GQQTGFLAT--T--VEEYADAILEVLRMRETERLEIAAAARKRA-NRFSEQRFNEDFKDAIRPILNS 460 (463)
T ss_pred CCcccccCC--C--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHHHHHHHhh
Confidence 67899884 5 9999999999998 5788999999999998 5599999999999999998764
No 34
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=100.00 E-value=2.4e-38 Score=305.19 Aligned_cols=339 Identities=21% Similarity=0.196 Sum_probs=258.8
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHH--hhhhhhhhcceeeE---ecCChhhHHhhcC
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY--SLEHKMWDRGVQVI---SAKGQETINTALK 150 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 150 (470)
|||++++.++++ +++++.++++.|.++||+|++++............ ............+. .........+..+
T Consensus 1 ki~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T cd03799 1 KIAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLARELRRLG 79 (355)
T ss_pred CEEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 699999988665 78999999999999999999999654432110000 00000000000000 0001122234579
Q ss_pred CcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch--hhhhcccccccceeeeehhhHHHHHHhhhhhhccC
Q 012132 151 ADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK--LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIK 228 (470)
Q Consensus 151 ~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 228 (470)
+|+||+|................ ..+++++.|+....... ......+...+.+++.+....+.+.+ .++.+
T Consensus 80 ~Dii~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~l~~----~~~~~ 152 (355)
T cd03799 80 IDHIHAHFGTTPATVAMLASRLG---GIPYSFTAHGKDIFRSPDAIDLDEKLARADFVVAISEYNRQQLIR----LLGCD 152 (355)
T ss_pred CCEEEECCCCchHHHHHHHHHhc---CCCEEEEEecccccccCchHHHHHHHhhCCEEEECCHHHHHHHHH----hcCCC
Confidence 99999998654443333332211 25677888854322222 24455566778888888887776654 44677
Q ss_pred CCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCc
Q 012132 229 MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 308 (470)
Q Consensus 229 ~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~ 308 (470)
..++.++|||+|.+.+.+.. .....+++.++++|++.+.||++.+++++.++.+ +.++
T Consensus 153 ~~~~~vi~~~~d~~~~~~~~---------------~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~-------~~~~ 210 (355)
T cd03799 153 PDKIHVVHCGVDLERFPPRP---------------PPPPGEPLRILSVGRLVEKKGLDYLLEALALLKD-------RGID 210 (355)
T ss_pred cccEEEEeCCcCHHHcCCcc---------------ccccCCCeEEEEEeeeccccCHHHHHHHHHHHhh-------cCCC
Confidence 88899999999998875432 0122567889999999999999999999998855 3478
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcc------cccchHHHHHHh
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWG------ECFGRITIEAMA 380 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~------E~~g~~~lEAma 380 (470)
++++++|.+ +..+.+++.++++++.++|++.|+. +++..+|+.||++++||. . |+||++++|||+
T Consensus 211 ~~l~i~G~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~--~~~~~~~e~~~~~~~Ea~a 283 (355)
T cd03799 211 FRLDIVGDG-----PLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSV--TAADGDREGLPVVLMEAMA 283 (355)
T ss_pred eEEEEEECC-----ccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecce--ecCCCCccCccHHHHHHHH
Confidence 999999998 4678889999999999999999987 789999999999999999 7 999999999999
Q ss_pred cCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHH
Q 012132 381 FQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAER 453 (470)
Q Consensus 381 ~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~ 453 (470)
+|+|||+++.|+.++++.++.+|++++++| +++++++|.+++++++.+.++++++++.+++.|||+.++++
T Consensus 284 ~G~Pvi~~~~~~~~~~i~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~ 354 (355)
T cd03799 284 MGLPVISTDVSGIPELVEDGETGLLVPPGD--PEALADAIERLLDDPELRREMGEAGRARVEEEFDIRKQAAR 354 (355)
T ss_pred cCCCEEecCCCCcchhhhCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 999999999999999999988999999988 99999999999999999999999999999999999999875
No 35
>PRK10125 putative glycosyl transferase; Provisional
Probab=100.00 E-value=1.7e-38 Score=307.32 Aligned_cols=334 Identities=13% Similarity=0.081 Sum_probs=224.6
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhH-------H-------Hhhhhhh--hhcceee-E
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEV-------I-------YSLEHKM--WDRGVQV-I 137 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-------~-------~~~~~~~--~~~~~~~-~ 137 (470)
||||++...+..||+|+.+.+|++.|.++||+|.++........... . ....... +..+... .
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSHQNYPQVIKHTPRMTAMANIALFRLFNRDLFG 80 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCcccccccCCcceEEEecccHHHHHHHHHHHhcchhhcc
Confidence 79999999999999999999999999999999999985543222100 0 0000000 0000000 1
Q ss_pred ecCChh-hHHhhcCCcEEEEcccchh---hhH-HHHhh-hcCCccccceeeEEeeecccc-----------chh------
Q 012132 138 SAKGQE-TINTALKADLIVLNTAVAG---KWL-DAVLK-EDVPRVLPNVLWWIHEMRGHY-----------FKL------ 194 (470)
Q Consensus 138 ~~~~~~-~~~~~~~~DiV~~~~~~~~---~~~-~~~~~-~~~~~~~~~~~~~~h~~~~~~-----------~~~------ 194 (470)
...... .+.+..+|||||+|..... ... ..... ........|++||.|+.+... ++.
T Consensus 81 ~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp 160 (405)
T PRK10125 81 NFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCP 160 (405)
T ss_pred hHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCC
Confidence 111112 2325789999999986542 211 11000 011222368999999987331 000
Q ss_pred ---------------hh-------hcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHH
Q 012132 195 ---------------DY-------VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVA 252 (470)
Q Consensus 195 ---------------~~-------~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~ 252 (470)
.+ .......+.+++.|....+.+. ..++ ..++.|||||+|.+.+.+.++.
T Consensus 161 ~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~----~~~~--~~~i~vI~NGid~~~~~~~~~~-- 232 (405)
T PRK10125 161 TLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFN----SLYG--PGRCRIINNGIDMATEAILAEL-- 232 (405)
T ss_pred CccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHH----HHcC--CCCEEEeCCCcCcccccccccc--
Confidence 00 0001112345666666655433 2333 4689999999997543221110
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEEeec--ccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHH
Q 012132 253 KRVLREHVRESLGVRNEDLLFAIINSV--SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRN 330 (470)
Q Consensus 253 ~~~~~~~~r~~~~~~~~~~~i~~vGrl--~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~ 330 (470)
...+ .++++.+++++|+. .+.||++.+++|+..+. ++++|+++|.|.+. .
T Consensus 233 -----~~~~----~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l~----------~~~~L~ivG~g~~~-----~---- 284 (405)
T PRK10125 233 -----PPVR----ETQGKPKIAVVAHDLRYDGKTDQQLVREMMALG----------DKIELHTFGKFSPF-----T---- 284 (405)
T ss_pred -----cccc----cCCCCCEEEEEEeccccCCccHHHHHHHHHhCC----------CCeEEEEEcCCCcc-----c----
Confidence 0001 12466789999994 46899999999998751 57999999987321 0
Q ss_pred HHHhcCCCCcEEEeccc---CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeec
Q 012132 331 YVMQKKIQDRVHFVNKT---LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHP 407 (470)
Q Consensus 331 ~~~~~~l~~~V~~~g~~---~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~ 407 (470)
.++|.++|+. .++.++|+++|+||+||. .|+||++++||||||+|||+|++||++|++.++ +|++++
T Consensus 285 -------~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~--~Egfp~vilEAmA~G~PVVat~~gG~~Eiv~~~-~G~lv~ 354 (405)
T PRK10125 285 -------AGNVVNHGFETDKRKLMSALNQMDALVFSSR--VDNYPLILCEALSIGVPVIATHSDAAREVLQKS-GGKTVS 354 (405)
T ss_pred -------ccceEEecCcCCHHHHHHHHHhCCEEEECCc--cccCcCHHHHHHHcCCCEEEeCCCChHHhEeCC-cEEEEC
Confidence 1468888864 568999999999999999 999999999999999999999999999999765 999999
Q ss_pred CCCCChHHHHHHHHHHHhCHHHHHH----HHHHHHHHHHHHcChhHHHHHHHHHHHHH
Q 012132 408 VGKEGITPLAKNIVKLATHVERRLT----MGKRGYERVKEIFQEHHMAERIAVVLKEV 461 (470)
Q Consensus 408 ~~d~~~~~la~~i~~ll~~~~~~~~----~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 461 (470)
++| +++|++.+ +++.+++ +.+++++++.+.||++.++++|+++|+++
T Consensus 355 ~~d--~~~La~~~-----~~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 355 EEE--VLQLAQLS-----KPEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred CCC--HHHHHhcc-----CHHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999 99999854 3333332 23568888889999999999999999863
No 36
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=100.00 E-value=1.4e-38 Score=304.33 Aligned_cols=321 Identities=16% Similarity=0.139 Sum_probs=231.8
Q ss_pred cEEEEEeecc------CCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhh--ccee---eEecCChh
Q 012132 75 KLVLLVSHEL------SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD--RGVQ---VISAKGQE 143 (470)
Q Consensus 75 ~kIl~v~~~~------~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~ 143 (470)
|||+++++.+ ..||+++++.+|+++|.+.||+|++++.................... .... ........
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAPLVPVVPEPLRLDAPGRDRAEAEALALAE 80 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccceeeccCCCcccccchhhHhhHHHHHHHH
Confidence 7999999986 33777999999999999999999999965543211100000000000 0000 00011223
Q ss_pred hHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhh
Q 012132 144 TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRE 223 (470)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 223 (470)
.+.+..+||+||+|+.....+ ..+ ....|++++.|+........ ........+..++.|......+..
T Consensus 81 ~~~~~~~~Divh~~~~~~~~~---~~~----~~~~~~v~~~h~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~---- 148 (335)
T cd03802 81 RALAAGDFDIVHNHSLHLPLP---FAR----PLPVPVVTTLHGPPDPELLK-LYYAARPDVPFVSISDAQRRPWPP---- 148 (335)
T ss_pred HHHhcCCCCEEEecCcccchh---hhc----ccCCCEEEEecCCCCcccch-HHHhhCcCCeEEEecHHHHhhccc----
Confidence 455668999999998765554 111 12257889999875443322 222334445566666665443321
Q ss_pred hhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhc
Q 012132 224 RLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKK 303 (470)
Q Consensus 224 ~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~ 303 (470)
..++.+||||+|.+.|.+.. .++..++++||+.+.||++.+++++++
T Consensus 149 -----~~~~~vi~ngvd~~~~~~~~-------------------~~~~~i~~~Gr~~~~Kg~~~li~~~~~--------- 195 (335)
T cd03802 149 -----LPWVATVHNGIDLDDYPFRG-------------------PKGDYLLFLGRISPEKGPHLAIRAARR--------- 195 (335)
T ss_pred -----ccccEEecCCcChhhCCCCC-------------------CCCCEEEEEEeeccccCHHHHHHHHHh---------
Confidence 16799999999998875421 345678999999999999999998753
Q ss_pred ccCCceEEEEEeCCCCcChHHHHHHHHHHHhcC-CCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHh
Q 012132 304 LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK-IQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA 380 (470)
Q Consensus 304 ~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~-l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma 380 (470)
.+++|+|+|+|. ....+.....+.. +.++|+|+|++ +++.++|+.+|++++||. +.|+||++++|||+
T Consensus 196 ---~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~-~~E~~~~~~lEAma 266 (335)
T cd03802 196 ---AGIPLKLAGPVS-----DPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPIL-WEEPFGLVMIEAMA 266 (335)
T ss_pred ---cCCeEEEEeCCC-----CHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCc-ccCCcchHHHHHHh
Confidence 578999999984 3344444444433 56899999986 567899999999999997 36999999999999
Q ss_pred cCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Q 012132 381 FQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 381 ~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 459 (470)
||+|||+++.||..|++.++.+|+++++ +++++++|.++.+.. .+++++++.++|||+.++++|+++|+
T Consensus 267 ~G~PvI~~~~~~~~e~i~~~~~g~l~~~----~~~l~~~l~~l~~~~------~~~~~~~~~~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 267 CGTPVIAFRRGAVPEVVEDGVTGFLVDS----VEELAAAVARADRLD------RAACRRRAERRFSAARMVDDYLALYR 335 (335)
T ss_pred cCCCEEEeCCCCchhheeCCCcEEEeCC----HHHHHHHHHHHhccH------HHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 9999999999999999999989999975 799999999986543 24677888899999999999999984
No 37
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=5.2e-38 Score=301.49 Aligned_cols=337 Identities=12% Similarity=0.091 Sum_probs=234.1
Q ss_pred cccEEEEEeeccCC--CchhHHHHHHHHHHHhCC-ceEEEEecCCCCCchhH-------------HH-hhhhhh-----h
Q 012132 73 KSKLVLLVSHELSL--SGGPLLLMELAFLLRGVG-TKVNWITIQKPSEEDEV-------------IY-SLEHKM-----W 130 (470)
Q Consensus 73 ~~~kIl~v~~~~~~--~G~~~~~~~l~~~L~~~G-~~V~v~~~~~~~~~~~~-------------~~-~~~~~~-----~ 130 (470)
++|||++++..+.| +|.......++.+|+++| |+|+|+.++.+...... .. ...+.. .
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v~r 82 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERISF 82 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeEEE
Confidence 56999999998876 888899999999999999 89999997654211000 00 000000 0
Q ss_pred hcc--eeeEec------------CChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchh--
Q 012132 131 DRG--VQVISA------------KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL-- 194 (470)
Q Consensus 131 ~~~--~~~~~~------------~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~-- 194 (470)
-.+ +..++. ......+...+||+||++++....+.........+ . ..++.++|....+|...
T Consensus 83 ~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k-~-~~vV~tyHT~y~~Y~~~~~ 160 (462)
T PLN02846 83 LPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKTK-F-RLVIGIVHTNYLEYVKREK 160 (462)
T ss_pred ecccccccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhc-C-CcEEEEECCChHHHHHHhc
Confidence 011 111111 12334556789999999999877775222222111 1 23777888754443211
Q ss_pred ------hhh----ccc--ccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHH
Q 012132 195 ------DYV----KHL--PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRE 262 (470)
Q Consensus 195 ------~~~----~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~ 262 (470)
... .++ ...+.+++.|....+ +. ..+.+..+|||.+.|.+.... .++
T Consensus 161 ~g~~~~~l~~~~~~~~~r~~~d~vi~pS~~~~~-l~-----------~~~i~~v~GVd~~~f~~~~~~---------~~~ 219 (462)
T PLN02846 161 NGRVKAFLLKYINSWVVDIYCHKVIRLSAATQD-YP-----------RSIICNVHGVNPKFLEIGKLK---------LEQ 219 (462)
T ss_pred cchHHHHHHHHHHHHHHHHhcCEEEccCHHHHH-Hh-----------hCEEecCceechhhcCCCccc---------Hhh
Confidence 011 111 123555666653322 11 123444589999988765321 222
Q ss_pred HcCCCCC--CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCc
Q 012132 263 SLGVRNE--DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDR 340 (470)
Q Consensus 263 ~~~~~~~--~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~ 340 (470)
.++ +.+ ..+++|+||+.++||++.+++|++++.+ ..++++|+|+|+| |.+++|+++++++++..+
T Consensus 220 ~~~-~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~-------~~~~~~l~ivGdG-----p~~~~L~~~a~~l~l~~~ 286 (462)
T PLN02846 220 QKN-GEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQK-------ELSGLEVDLYGSG-----EDSDEVKAAAEKLELDVR 286 (462)
T ss_pred hcC-CCCCcceEEEEEecCcccCCHHHHHHHHHHHHh-------hCCCeEEEEECCC-----ccHHHHHHHHHhcCCcEE
Confidence 222 334 3468899999999999999999998755 3478999999999 689999999999998754
Q ss_pred EEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHH
Q 012132 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNI 420 (470)
Q Consensus 341 V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i 420 (470)
+ |.|. .+..++|+.+|+||+||. .|+||++++||||||+|||+++.++ .+++.++.+|++++ | .+++++++
T Consensus 287 v-f~G~-~~~~~~~~~~DvFv~pS~--~Et~g~v~lEAmA~G~PVVa~~~~~-~~~v~~~~ng~~~~--~--~~~~a~ai 357 (462)
T PLN02846 287 V-YPGR-DHADPLFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPS-NEFFKQFPNCRTYD--D--GKGFVRAT 357 (462)
T ss_pred E-ECCC-CCHHHHHHhCCEEEECCC--cccchHHHHHHHHcCCcEEEecCCC-cceeecCCceEecC--C--HHHHHHHH
Confidence 4 7776 455689999999999999 9999999999999999999999998 59999999999984 4 89999999
Q ss_pred HHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Q 012132 421 VKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 460 (470)
Q Consensus 421 ~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 460 (470)
.++++++. ..++.+++ +.|||+..+++++++|+-
T Consensus 358 ~~~l~~~~--~~~~~~a~----~~~SWe~~~~~l~~~~~~ 391 (462)
T PLN02846 358 LKALAEEP--APLTDAQR----HELSWEAATERFLRVADL 391 (462)
T ss_pred HHHHccCc--hhHHHHHH----HhCCHHHHHHHHHHHhcc
Confidence 99998542 22233333 469999999999999974
No 38
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=100.00 E-value=1.1e-37 Score=301.72 Aligned_cols=348 Identities=20% Similarity=0.193 Sum_probs=249.8
Q ss_pred EEEEEeeccC-CCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeE------ecCChhhHHhh
Q 012132 76 LVLLVSHELS-LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI------SAKGQETINTA 148 (470)
Q Consensus 76 kIl~v~~~~~-~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 148 (470)
||+|+++..+ .||.++++.+|+++|.+.||+|.+++............ . ....... .........+.
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~ 74 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGG----E--QEVVRVIVLDNPLDYRRAARAIRL 74 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCC----c--ccceeeeecCCchhHHHHHHHHhh
Confidence 6999998877 47779999999999999999999998544322111000 0 0011111 11122344567
Q ss_pred cCCcEEEEcccch--hhhHHHHhhhcCCccccceeeEEeeecccc----chhhhhcccccccceeeeehhhHHHHHHhhh
Q 012132 149 LKADLIVLNTAVA--GKWLDAVLKEDVPRVLPNVLWWIHEMRGHY----FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (470)
Q Consensus 149 ~~~DiV~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (470)
.+||+||++.... .................+++++.|+..... ........+...+.+++.| .+...+...
T Consensus 75 ~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s---~~~~~~~~~ 151 (366)
T cd03822 75 SGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMS---SELLRALLL 151 (366)
T ss_pred cCCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEee---HHHHHHHHh
Confidence 8999999976221 111111111111112368899999862111 1122334456778888886 222222211
Q ss_pred hhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhh
Q 012132 223 ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEK 302 (470)
Q Consensus 223 ~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~ 302 (470)
.. ...++.++|||++...+..... .++...+.+.++++++|++.+.||++.+++|++.+.+
T Consensus 152 -~~--~~~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~----- 212 (366)
T cd03822 152 -RA--YPEKIAVIPHGVPDPPAEPPES-----------LKALGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVA----- 212 (366)
T ss_pred -hc--CCCcEEEeCCCCcCcccCCchh-----------hHhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHh-----
Confidence 11 1468999999999877654321 1233445678899999999999999999999998865
Q ss_pred cccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc-c--CCHHHHHHhcCEEEEccCCccc--ccchHHHH
Q 012132 303 KLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-T--LTVAPYLAAIDVLVQNSQAWGE--CFGRITIE 377 (470)
Q Consensus 303 ~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~-~--~~~~~~~~~aDv~v~pS~~~~E--~~g~~~lE 377 (470)
+.++++|+|+|++.+..........++++++++.++|.|+|. . +++.++|+.||++++||. .| ++|++++|
T Consensus 213 --~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~--~e~~~~~~~~~E 288 (366)
T cd03822 213 --KHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYR--SADQTQSGVLAY 288 (366)
T ss_pred --hCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEeccc--ccccccchHHHH
Confidence 448999999999753221111111134788899999999986 3 789999999999999999 89 99999999
Q ss_pred HHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Q 012132 378 AMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVV 457 (470)
Q Consensus 378 Ama~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~ 457 (470)
||++|+|||+++.|+ .+.+.++.+|++++++| +++++++|.++++|++.+.++++++++++.+ |||+++++++.++
T Consensus 289 a~a~G~PvI~~~~~~-~~~i~~~~~g~~~~~~d--~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~ 364 (366)
T cd03822 289 AIGFGKPVISTPVGH-AEEVLDGGTGLLVPPGD--PAALAEAIRRLLADPELAQALRARAREYARA-MSWERVAERYLRL 364 (366)
T ss_pred HHHcCCCEEecCCCC-hheeeeCCCcEEEcCCC--HHHHHHHHHHHHcChHHHHHHHHHHHHHHhh-CCHHHHHHHHHHH
Confidence 999999999999999 77777788999999998 9999999999999999999999999999988 9999999999998
Q ss_pred HH
Q 012132 458 LK 459 (470)
Q Consensus 458 ~~ 459 (470)
|+
T Consensus 365 ~~ 366 (366)
T cd03822 365 LA 366 (366)
T ss_pred hC
Confidence 74
No 39
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.2e-37 Score=300.57 Aligned_cols=332 Identities=26% Similarity=0.249 Sum_probs=250.3
Q ss_pred EEEEEeeccCC--CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC---------C-hh
Q 012132 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK---------G-QE 143 (470)
Q Consensus 76 kIl~v~~~~~~--~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~ 143 (470)
|||+++..+++ ||.++++.+++++|.++||+|++++.......... ...+..+.... . ..
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRDE--------ERNGHRVIRAPSLLNVASTPFSPS 72 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchhh--------hccCceEEEeecccccccccccHH
Confidence 69999998876 66699999999999999999999996544322111 01111111110 0 00
Q ss_pred ----hHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc------chhhhhcccccccceeeeehhh
Q 012132 144 ----TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY------FKLDYVKHLPLVAGAMIDSHVT 213 (470)
Q Consensus 144 ----~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~------~~~~~~~~~~~~~~~~~~s~~~ 213 (470)
......+||+||+|.+............ ...+.++++|+..... +.......+...+.+++.|...
T Consensus 73 ~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~ 148 (357)
T cd03795 73 FFKQLKKLAKKADVIHLHFPNPLADLALLLLP----RKKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPNY 148 (357)
T ss_pred HHHHHHhcCCCCCEEEEecCcchHHHHHHHhc----cCceEEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEeCcHHH
Confidence 1134678999999986654333322222 1246777888532111 1122233456677788777777
Q ss_pred HHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHH
Q 012132 214 AEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFY 293 (470)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~ 293 (470)
.+.+.. .... ..++.+||||+|.+.+.+.... +. .....+.+.++++++||+.+.||++.+++|+.
T Consensus 149 ~~~~~~----~~~~-~~~~~~i~~gi~~~~~~~~~~~------~~---~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~ 214 (357)
T cd03795 149 AETSPV----LRRF-RDKVRVIPLGLDPARYPRPDAL------EE---AIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAA 214 (357)
T ss_pred HHHHHH----hcCC-ccceEEecCCCChhhcCCcchh------hh---HhhcCCCCCcEEEEecccccccCHHHHHHHHH
Confidence 654443 2222 3679999999999877654221 00 22334467789999999999999999999998
Q ss_pred HHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCccccc
Q 012132 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECF 371 (470)
Q Consensus 294 ~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~ 371 (470)
++ .+++++|+|+| +....+++.++++++.++|+|+|++ +++.++|+.||++++||....|+|
T Consensus 215 ~l-----------~~~~l~i~G~g-----~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~ 278 (357)
T cd03795 215 AL-----------PDAPLVIVGEG-----PLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAF 278 (357)
T ss_pred hc-----------cCcEEEEEeCC-----hhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCccccccc
Confidence 76 37999999998 5788899999899999999999987 568999999999999996336999
Q ss_pred chHHHHHHhcCCCEEecCCCCcceeeec-CceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHH
Q 012132 372 GRITIEAMAFQLPVLGTAAGGTTEIVVN-GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHM 450 (470)
Q Consensus 372 g~~~lEAma~G~PvI~s~~~g~~e~v~~-~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~ 450 (470)
|++++|||++|+|||+++.++..+.+.+ +++|++++++| +++++++|.++++|++.++.|++++++.++++|||+++
T Consensus 279 g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~~~~~g~~~~~~d--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~ 356 (357)
T cd03795 279 GIVLLEAMAFGKPVISTEIGTGGSYVNLHGVTGLVVPPGD--PAALAEAIRRLLEDPELRERLGEAARERAEEEFTADRM 356 (357)
T ss_pred chHHHHHHHcCCCEEecCCCCchhHHhhCCCceEEeCCCC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHhcchHhh
Confidence 9999999999999999999999998876 89999999998 99999999999999999999999999999999999987
Q ss_pred H
Q 012132 451 A 451 (470)
Q Consensus 451 ~ 451 (470)
+
T Consensus 357 ~ 357 (357)
T cd03795 357 V 357 (357)
T ss_pred C
Confidence 4
No 40
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=100.00 E-value=7.3e-39 Score=282.44 Aligned_cols=343 Identities=20% Similarity=0.177 Sum_probs=262.8
Q ss_pred cEEEEEeeccCC--CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEe--------------
Q 012132 75 KLVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS-------------- 138 (470)
Q Consensus 75 ~kIl~v~~~~~~--~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 138 (470)
++|+++++.+.| ||.+.+...|++.|-+.||.|.+++-..+... .-.....|.+++.
T Consensus 1 ~~i~mVsdff~P~~ggveshiy~lSq~li~lghkVvvithayg~r~-------girylt~glkVyylp~~v~~n~tT~pt 73 (426)
T KOG1111|consen 1 SRILMVSDFFYPSTGGVESHIYALSQCLIRLGHKVVVITHAYGNRV-------GIRYLTNGLKVYYLPAVVGYNQTTFPT 73 (426)
T ss_pred CcceeeCcccccCCCChhhhHHHhhcchhhcCCeEEEEeccccCcc-------ceeeecCCceEEEEeeeeeecccchhh
Confidence 368999988655 77799999999999999999999995444321 1111122233322
Q ss_pred ----cCChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch------hhhhcccccccceee
Q 012132 139 ----AKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK------LDYVKHLPLVAGAMI 208 (470)
Q Consensus 139 ----~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~------~~~~~~~~~~~~~~~ 208 (470)
.+..+.+..+++..+||.|++.....-..+...+. ..-+.+++-|...+..-- ......+...++.+|
T Consensus 74 v~~~~Pllr~i~lrE~I~ivhghs~fS~lahe~l~hart--MGlktVfTdHSlfGfad~~si~~n~ll~~sL~~id~~Ic 151 (426)
T KOG1111|consen 74 VFSDFPLLRPILLRERIEIVHGHSPFSYLAHEALMHART--MGLKTVFTDHSLFGFADIGSILTNKLLPLSLANIDRIIC 151 (426)
T ss_pred hhccCcccchhhhhhceEEEecCChHHHHHHHHHHHHHh--cCceEEEeccccccccchhhhhhcceeeeeecCCCcEEE
Confidence 23445666678999999999876554443333222 335788899986554321 112233557788999
Q ss_pred eehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHH
Q 012132 209 DSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 288 (470)
Q Consensus 209 ~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~l 288 (470)
+|.+..+- ..-+-.+.+.++.+|||.++.+.|.|.+... ...+-..++.+||+..+||+|++
T Consensus 152 Vshtsken----tvlr~~L~p~kvsvIPnAv~~~~f~P~~~~~--------------~S~~i~~ivv~sRLvyrKGiDll 213 (426)
T KOG1111|consen 152 VSHTSKEN----TVLRGALAPAKVSVIPNAVVTHTFTPDAADK--------------PSADIITIVVASRLVYRKGIDLL 213 (426)
T ss_pred EeecCCCc----eEEEeccCHhHeeeccceeeccccccCcccc--------------CCCCeeEEEEEeeeeeccchHHH
Confidence 99988643 2235567889999999999999999854321 11233788999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCC
Q 012132 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA 366 (470)
Q Consensus 289 l~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~ 366 (470)
++++.++.+ ++|+++++|+|+| |.+..+++..+++.++++|.++|.+ +++.+.|..-|+|++||.
T Consensus 214 ~~iIp~vc~-------~~p~vrfii~GDG-----Pk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSl- 280 (426)
T KOG1111|consen 214 LEIIPSVCD-------KHPEVRFIIIGDG-----PKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSL- 280 (426)
T ss_pred HHHHHHHHh-------cCCCeeEEEecCC-----cccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHH-
Confidence 999999987 7899999999999 7889999999999999999999975 899999999999999999
Q ss_pred cccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcC
Q 012132 367 WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQ 446 (470)
Q Consensus 367 ~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs 446 (470)
.|.||++++|||+||+|||+|++||++|++.++ .-++.++ . ++++++++++.+..-. ..-+...+++++.|+
T Consensus 281 -TEafc~~ivEAaScGL~VVsTrVGGIpeVLP~d-~i~~~~~-~--~~dl~~~v~~ai~~~~---~~p~~~h~~v~~~y~ 352 (426)
T KOG1111|consen 281 -TEAFCMVIVEAASCGLPVVSTRVGGIPEVLPED-MITLGEP-G--PDDLVGAVEKAITKLR---TLPLEFHDRVKKMYS 352 (426)
T ss_pred -HHHHHHHHHHHHhCCCEEEEeecCCccccCCcc-ceeccCC-C--hHHHHHHHHHHHHHhc---cCchhHHHHHHHhcc
Confidence 999999999999999999999999999999765 2233333 3 7888888888886422 113455677888999
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q 012132 447 EHHMAERIAVVLKEVLKKS 465 (470)
Q Consensus 447 ~~~~~~~~~~~~~~~l~~~ 465 (470)
|+..+++-+++|.++...+
T Consensus 353 w~dVa~rTekvy~r~~~t~ 371 (426)
T KOG1111|consen 353 WKDVAERTEKVYDRAATTS 371 (426)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 9999999999999987654
No 41
>PLN00142 sucrose synthase
Probab=100.00 E-value=1.7e-37 Score=311.70 Aligned_cols=219 Identities=18% Similarity=0.248 Sum_probs=177.5
Q ss_pred CCceEEEecCCchhhhhHhhhHHHHH-----------HHHHHHHHHcCC--CCCCeEEEEEeecccCCCHHHHHHHHHHH
Q 012132 229 MPDTYVVHLGNSKELMEVAEDNVAKR-----------VLREHVRESLGV--RNEDLLFAIINSVSRGKGQDLFLHSFYES 295 (470)
Q Consensus 229 ~~~i~vi~ngvd~~~~~~~~~~~~~~-----------~~~~~~r~~~~~--~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l 295 (470)
.+++.||++|+|...|.|......+. ......++.+|+ +.++++|+++||+.+.||++.+++|++++
T Consensus 519 ~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l 598 (815)
T PLN00142 519 DPKFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKN 598 (815)
T ss_pred ccCeeEECCCCChhhcCCCChHHhhHHhhcccchhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHH
Confidence 56899999999999887543211100 011223456776 45567899999999999999999999987
Q ss_pred HHHHHhhcccCCceEEEEEeCCC-Cc---ChH---HHHHHHHHHHhcCCCCcEEEeccc------CCHHHHHH-hcCEEE
Q 012132 296 LELIKEKKLEVPSVHAVIIGSDM-NA---QTK---FESELRNYVMQKKIQDRVHFVNKT------LTVAPYLA-AIDVLV 361 (470)
Q Consensus 296 ~~~l~~~~~~~~~~~l~ivG~g~-~~---~~~---~~~~l~~~~~~~~l~~~V~~~g~~------~~~~~~~~-~aDv~v 361 (470)
.+ ..++++|+|+|+|. +. ..+ ....+.++++++++.++|.|+|.+ .++..+++ ++|+||
T Consensus 599 ~~-------l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfV 671 (815)
T PLN00142 599 KR-------LRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFV 671 (815)
T ss_pred HH-------hCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEE
Confidence 44 22679999999872 11 111 235678899999999999999863 24555555 579999
Q ss_pred EccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHH----HhCHHHHHHHHHHH
Q 012132 362 QNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKL----ATHVERRLTMGKRG 437 (470)
Q Consensus 362 ~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~l----l~~~~~~~~~~~~a 437 (470)
+||. +|+||++++||||||+|||+|+.||+.|+|.++.+|++++++| +++++++|.++ +.|++.+++|+++|
T Consensus 672 lPS~--~EgFGLvvLEAMA~GlPVVATdvGG~~EIV~dG~tG~LV~P~D--~eaLA~aI~~lLekLl~Dp~lr~~mg~~A 747 (815)
T PLN00142 672 QPAL--YEAFGLTVVEAMTCGLPTFATCQGGPAEIIVDGVSGFHIDPYH--GDEAANKIADFFEKCKEDPSYWNKISDAG 747 (815)
T ss_pred eCCc--ccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999 9999999999999999999999999999999999999999999 99999998765 46999999999999
Q ss_pred HHHHHHHcChhHHHHHHHHHH
Q 012132 438 YERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 438 ~~~~~~~fs~~~~~~~~~~~~ 458 (470)
++++.++|||+.++++++++.
T Consensus 748 r~rv~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 748 LQRIYECYTWKIYAERLLTLG 768 (815)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999998865
No 42
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=3e-37 Score=298.97 Aligned_cols=348 Identities=19% Similarity=0.165 Sum_probs=249.1
Q ss_pred EEEEEeeccC--CCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhh-----hh-----hhhcceeeEecCChh
Q 012132 76 LVLLVSHELS--LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLE-----HK-----MWDRGVQVISAKGQE 143 (470)
Q Consensus 76 kIl~v~~~~~--~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~ 143 (470)
||+++++.++ .||+++++.+++++|.+.||+|++++............... .. ...............
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLVALNGVPVKLFSINVAYGLNLARYLFPPSLLAW 80 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchhhccCceeeecccchhhhhhhhhhccChhHHHH
Confidence 6999999885 47779999999999999999999999655432221110000 00 000000000000011
Q ss_pred hHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc--hhhh----------hcccccccceeeeeh
Q 012132 144 TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF--KLDY----------VKHLPLVAGAMIDSH 211 (470)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~--~~~~----------~~~~~~~~~~~~~s~ 211 (470)
......++|+||+|+............. .....+++++.|+....+. .... ...+...+.+++.+.
T Consensus 81 ~~~~~~~~dii~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 158 (375)
T cd03821 81 LRLNIREADIVHVHGLWSYPSLAAARAA--RKYGIPYVVSPHGMLDPWALPHKALKKRLAWFLFERRLLQAAAAVHATSE 158 (375)
T ss_pred HHHhCCCCCEEEEecccchHHHHHHHHH--HHhCCCEEEEccccccccccccchhhhHHHHHHHHHHHHhcCCEEEECCH
Confidence 2233468999999985432222111111 1122577888887644332 1000 111223344444443
Q ss_pred hhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHH
Q 012132 212 VTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 291 (470)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a 291 (470)
....... ......++.++|||+|.+.+.+.... . .|+.++.+.++++++++||+.+.||++.+++|
T Consensus 159 ~~~~~~~------~~~~~~~~~vi~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a 224 (375)
T cd03821 159 QEAAEIR------RLGLKAPIAVIPNGVDIPPFAALPSR-------G-RRRKFPILPDKRIILFLGRLHPKKGLDLLIEA 224 (375)
T ss_pred HHHHHHH------hhCCcccEEEcCCCcChhccCcchhh-------h-hhhhccCCCCCcEEEEEeCcchhcCHHHHHHH
Confidence 3222221 23456789999999999887654321 1 16777777888999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCccc
Q 012132 292 FYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGE 369 (470)
Q Consensus 292 ~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E 369 (470)
+.++.+ +.++++++++|.+.. .+...++.+++++++.++|+|+|++ +++..+|+.||++++||. .|
T Consensus 225 ~~~l~~-------~~~~~~l~i~G~~~~---~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~--~e 292 (375)
T cd03821 225 FAKLAE-------RFPDWHLVIAGPDEG---GYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSH--SE 292 (375)
T ss_pred HHHhhh-------hcCCeEEEEECCCCc---chHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccc--cC
Confidence 998865 448999999998743 3556677777889999999999987 489999999999999999 89
Q ss_pred ccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhH
Q 012132 370 CFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHH 449 (470)
Q Consensus 370 ~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~ 449 (470)
+||++++|||+||+|||+++.+|..+++.+ ..|++++.+ .++++++|.+++++++.++.+++++++.+.++|+|++
T Consensus 293 ~~~~~~~Eama~G~PvI~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~ 368 (375)
T cd03821 293 NFGIVVAEALACGTPVVTTDKVPWQELIEY-GCGWVVDDD---VDALAAALRRALELPQRLKAMGENGRALVEERFSWTA 368 (375)
T ss_pred CCCcHHHHHHhcCCCEEEcCCCCHHHHhhc-CceEEeCCC---hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999999999999999999999988 788888754 6999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 012132 450 MAERIA 455 (470)
Q Consensus 450 ~~~~~~ 455 (470)
++++++
T Consensus 369 ~~~~~~ 374 (375)
T cd03821 369 IAQQLL 374 (375)
T ss_pred HHHHhh
Confidence 999875
No 43
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=8.7e-38 Score=310.42 Aligned_cols=276 Identities=22% Similarity=0.238 Sum_probs=225.2
Q ss_pred cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc--------------chhhh--------hcccccccce
Q 012132 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--------------FKLDY--------VKHLPLVAGA 206 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~--------------~~~~~--------~~~~~~~~~~ 206 (470)
.++|+||+|+.....++....+.. ...|++++.|+..... ++..+ ...+...+.+
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~~~---~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~I 248 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAKAR---RGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRI 248 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHHHH---hCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 589999999754333333333322 2258899999853210 11111 1223456777
Q ss_pred eeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHH
Q 012132 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQD 286 (470)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~ 286 (470)
++.|....+... .++.+.+|+.+||||+|.+.|.+.... ..+.+.++|+++||+.+.||++
T Consensus 249 i~~s~~~~~~~~-----~~g~~~~ki~vIpNgid~~~f~~~~~~--------------~~~~~~~~i~~vGrl~~~Kg~~ 309 (475)
T cd03813 249 TTLYEGNRERQI-----EDGADPEKIRVIPNGIDPERFAPARRA--------------RPEKEPPVVGLIGRVVPIKDIK 309 (475)
T ss_pred EecCHHHHHHHH-----HcCCCHHHeEEeCCCcCHHHcCCcccc--------------ccCCCCcEEEEEeccccccCHH
Confidence 777776654332 567888899999999999988654210 1235678999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCC
Q 012132 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQA 366 (470)
Q Consensus 287 ~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~ 366 (470)
.+++|++.+.+ +.|+++++|+|++++ ++.+.++++++++++++.++|+|+| .+++.++|+.+|++++||.
T Consensus 310 ~li~a~~~l~~-------~~p~~~l~IvG~g~~-~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~aDv~vlpS~- 379 (475)
T cd03813 310 TFIRAAAIVRK-------KIPDAEGWVIGPTDE-DPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPKLDVLVLTSI- 379 (475)
T ss_pred HHHHHHHHHHH-------hCCCeEEEEECCCCc-ChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHhCCEEEeCch-
Confidence 99999998865 458999999999853 3358899999999999999999999 7899999999999999999
Q ss_pred cccccchHHHHHHhcCCCEEecCCCCcceeeec------CceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012132 367 WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN------GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYER 440 (470)
Q Consensus 367 ~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~------~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~ 440 (470)
.|+||++++|||+||+|||+|+.|+.+|++.+ |.+|++++++| +++++++|.++++|++.+++++++++++
T Consensus 380 -~Eg~p~~vlEAma~G~PVVatd~g~~~elv~~~~~~~~g~~G~lv~~~d--~~~la~ai~~ll~~~~~~~~~~~~a~~~ 456 (475)
T cd03813 380 -SEGQPLVILEAMAAGIPVVATDVGSCRELIEGADDEALGPAGEVVPPAD--PEALARAILRLLKDPELRRAMGEAGRKR 456 (475)
T ss_pred -hhcCChHHHHHHHcCCCEEECCCCChHHHhcCCcccccCCceEEECCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988 56999999999 9999999999999999999999999999
Q ss_pred HHHHcChhHHHHHHHHHHH
Q 012132 441 VKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 441 ~~~~fs~~~~~~~~~~~~~ 459 (470)
+.+.|+|+.++++|.++|+
T Consensus 457 v~~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 457 VERYYTLERMIDSYRRLYL 475 (475)
T ss_pred HHHhCCHHHHHHHHHHHhC
Confidence 9999999999999999984
No 44
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=6.4e-37 Score=293.40 Aligned_cols=329 Identities=21% Similarity=0.249 Sum_probs=250.3
Q ss_pred EEEEEeeccC-CCchhHHHHHHHHHHHhCCceEEEEecCCCC-CchhHHHhhhhhhhhcce----------eeEecCChh
Q 012132 76 LVLLVSHELS-LSGGPLLLMELAFLLRGVGTKVNWITIQKPS-EEDEVIYSLEHKMWDRGV----------QVISAKGQE 143 (470)
Q Consensus 76 kIl~v~~~~~-~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 143 (470)
||+++++.+. .||+++++..++++|.+.||+|++++..... .... .......... .........
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPFYE----LDPKIKVIDLGDKRDSKLLARFKKLRRLR 76 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCccc----cCCccceeecccccccchhccccchHHHH
Confidence 6899999887 6777999999999999999999999965543 1110 0110000000 011112233
Q ss_pred hHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhh-----hhcccccccceeeeehhhHHHHH
Q 012132 144 TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLD-----YVKHLPLVAGAMIDSHVTAEYWK 218 (470)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~~~ 218 (470)
.+.+..+||+||++......++.. ..... .+++.+.|+......... ....+...+.+++.|......
T Consensus 77 ~~l~~~~~d~i~~~~~~~~~~~~~-~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~-- 149 (348)
T cd03820 77 KLLKNNKPDVVISFLTSLLTFLAS-LGLKI----VKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRAL-- 149 (348)
T ss_pred HhhcccCCCEEEEcCchHHHHHHH-Hhhcc----ccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHHHH--
Confidence 455668999999998762222222 11111 367788887644332211 233456778888888777511
Q ss_pred HhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHH
Q 012132 219 NRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLEL 298 (470)
Q Consensus 219 ~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~ 298 (470)
.......++.++|||++...+... .+.++..++++|++.+.||++.+++++.++.+
T Consensus 150 -----~~~~~~~~~~vi~~~~~~~~~~~~------------------~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~- 205 (348)
T cd03820 150 -----YYKKFNKNVVVIPNPLPFPPEEPS------------------SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAK- 205 (348)
T ss_pred -----hhccCCCCeEEecCCcChhhcccc------------------CCCCCcEEEEEEeeccccCHHHHHHHHHHHHh-
Confidence 233466789999999998865432 12567889999999999999999999998865
Q ss_pred HHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHH
Q 012132 299 IKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEA 378 (470)
Q Consensus 299 l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEA 378 (470)
..++++|+|+|++ +....++++++++++.++|.+.|..+++..+|+.||++++||. .|++|++++||
T Consensus 206 ------~~~~~~l~i~G~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~i~ps~--~e~~~~~~~Ea 272 (348)
T cd03820 206 ------KHPDWKLRIVGDG-----PEREALEALIKELGLEDRVILLGFTKNIEEYYAKASIFVLTSR--FEGFPMVLLEA 272 (348)
T ss_pred ------cCCCeEEEEEeCC-----CCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCEEEeCcc--ccccCHHHHHH
Confidence 4589999999998 4677788889999999999999999999999999999999999 89999999999
Q ss_pred HhcCCCEEecCCC-CcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Q 012132 379 MAFQLPVLGTAAG-GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 455 (470)
Q Consensus 379 ma~G~PvI~s~~~-g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 455 (470)
|++|+|||+++.+ +..+++.++.+|+++++.| +++++++|.++++|++.++++++++++.+ +.|+|++++++|.
T Consensus 273 ~a~G~Pvi~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 347 (348)
T cd03820 273 MAFGLPVISFDCPTGPSEIIEDGVNGLLVPNGD--VEALAEALLRLMEDEELRKRMGANARESA-ERFSIENIIKQWE 347 (348)
T ss_pred HHcCCCEEEecCCCchHhhhccCcceEEeCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHhCHHHHHHHhc
Confidence 9999999999975 5667777777999999988 99999999999999999999999997655 6699999999875
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=4.7e-37 Score=296.85 Aligned_cols=342 Identities=20% Similarity=0.206 Sum_probs=250.0
Q ss_pred EEEEEeeccCC--CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHH--hh--hhhhhhccee--eEecCChhhHHh
Q 012132 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY--SL--EHKMWDRGVQ--VISAKGQETINT 147 (470)
Q Consensus 76 kIl~v~~~~~~--~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~--~~--~~~~~~~~~~--~~~~~~~~~~~~ 147 (470)
||++++..+++ ||++.++.+++++|.++||+|++++............ .+ .......... +..........+
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPARVVPVPSVPLPGYPEIRLALPPRRRVRRLLD 80 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCCCceeecccccCcccceEecccchhhHHHHHH
Confidence 68999988765 6668999999999999999999999654321110000 00 0000000011 111122334446
Q ss_pred hcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch------------hhhhcccccccceeeeehhhHH
Q 012132 148 ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK------------LDYVKHLPLVAGAMIDSHVTAE 215 (470)
Q Consensus 148 ~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~------------~~~~~~~~~~~~~~~~s~~~~~ 215 (470)
..+||+||+++.....+........ ...|++.++|+....+.. ..........+.+++.+....+
T Consensus 81 ~~~pdii~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~ 157 (364)
T cd03814 81 AFAPDVVHIATPGPLGLAALRAARR---LGIPVVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLAD 157 (364)
T ss_pred hcCCCEEEEeccchhhHHHHHHHHH---cCCCEEEEEecChHHHhhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHHH
Confidence 7899999998755433333222221 225778888875432211 1112233456667777776655
Q ss_pred HHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHH
Q 012132 216 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYES 295 (470)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l 295 (470)
.+. . ....++.+++||+|.+.+.+.... ...+++++ +.++++++++|++.+.||++.+++++.++
T Consensus 158 ~~~-----~--~~~~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~-~~~~~~i~~~G~~~~~k~~~~~i~~~~~l 222 (364)
T cd03814 158 ELR-----A--RGFRRVRLWPRGVDTELFHPRRRD-------EALRARLG-PPDRPVLLYVGRLAPEKNLEALLDADLPL 222 (364)
T ss_pred HHh-----c--cCCCceeecCCCccccccCccccc-------HHHHHHhC-CCCCeEEEEEeccccccCHHHHHHHHHHh
Confidence 322 1 234578999999999887654321 22344555 45678899999999999999999999988
Q ss_pred HHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc--cCCHHHHHHhcCEEEEccCCcccccch
Q 012132 296 LELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGR 373 (470)
Q Consensus 296 ~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~--~~~~~~~~~~aDv~v~pS~~~~E~~g~ 373 (470)
.+ + ++++++|+|+| +....++ +..++|.|+|+ .+++.++|+.||++++||. .|+||+
T Consensus 223 ~~-------~-~~~~l~i~G~~-----~~~~~~~------~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~--~e~~~~ 281 (364)
T cd03814 223 RR-------R-PPVRLVIVGDG-----PARARLE------ARYPNVHFLGFLDGEELAAAYASADVFVFPSR--TETFGL 281 (364)
T ss_pred hh-------c-CCceEEEEeCC-----chHHHHh------ccCCcEEEEeccCHHHHHHHHHhCCEEEECcc--cccCCc
Confidence 54 3 68999999998 3444444 44578999996 4789999999999999999 899999
Q ss_pred HHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHH
Q 012132 374 ITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAER 453 (470)
Q Consensus 374 ~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~ 453 (470)
+++|||+||+|||+++.++..|++.++.+|+++++.| .++++++|.++++|++.+.++++++++.+ +.|+|++++++
T Consensus 282 ~~lEa~a~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 358 (364)
T cd03814 282 VVLEAMASGLPVVAPDAGGPADIVTDGENGLLVEPGD--AEAFAAALAALLADPELRRRMAARARAEA-ERRSWEAFLDN 358 (364)
T ss_pred HHHHHHHcCCCEEEcCCCCchhhhcCCcceEEcCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHH-hhcCHHHHHHH
Confidence 9999999999999999999999999989999999988 99999999999999999999999999988 66999999999
Q ss_pred HHHHHH
Q 012132 454 IAVVLK 459 (470)
Q Consensus 454 ~~~~~~ 459 (470)
+.++|+
T Consensus 359 ~~~~~~ 364 (364)
T cd03814 359 LLEAYR 364 (364)
T ss_pred HHHhhC
Confidence 999874
No 46
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=100.00 E-value=2.1e-36 Score=293.12 Aligned_cols=347 Identities=21% Similarity=0.279 Sum_probs=258.4
Q ss_pred EEEEEeeccCC--CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhh-------hhhcceeeEecCChhhHH
Q 012132 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHK-------MWDRGVQVISAKGQETIN 146 (470)
Q Consensus 76 kIl~v~~~~~~--~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 146 (470)
|||+++..++| ||++..+.+++++|.++||+|++++................. ..................
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEVVVVRPFRVPTFKYPDFRLPLPIPRALIIIL 80 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCcccccccccccccccchhhhhhccccHHHHHHHHH
Confidence 68999988765 666899999999999999999999965443221100000000 000000000011122335
Q ss_pred hhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch---------------hhhhcccccccceeeeeh
Q 012132 147 TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK---------------LDYVKHLPLVAGAMIDSH 211 (470)
Q Consensus 147 ~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~---------------~~~~~~~~~~~~~~~~s~ 211 (470)
+..+||+||++++............. ...+++++.|+....+.. ......+..++.+++.+.
T Consensus 81 ~~~~~Div~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~ 157 (374)
T cd03817 81 KELGPDIVHTHTPFSLGLLGLRVARK---LGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSE 157 (374)
T ss_pred hhcCCCEEEECCchhhhhHHHHHHHH---cCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccH
Confidence 66899999999875443333322222 225788888875432210 112233456677777777
Q ss_pred hhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHH
Q 012132 212 VTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 291 (470)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a 291 (470)
...+.+. .++.. .++.++|||+|...+.+... ...++.++.++++++++++|++.+.||++.++++
T Consensus 158 ~~~~~~~-----~~~~~-~~~~vi~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~ 223 (374)
T cd03817 158 KIADLLR-----EYGVK-RPIEVIPTGIDLDRFEPVDG--------DDERRKLGIPEDEPVLLYVGRLAKEKNIDFLIRA 223 (374)
T ss_pred HHHHHHH-----hcCCC-CceEEcCCccchhccCccch--------hHHHHhcCCCCCCeEEEEEeeeecccCHHHHHHH
Confidence 7655554 33433 45999999999988765432 2236667777888999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCccc
Q 012132 292 FYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGE 369 (470)
Q Consensus 292 ~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E 369 (470)
+..+.+ +.++++++++|+| +..+.+++.++++++.++|.++|+. +++..+|+.||++++||. .|
T Consensus 224 ~~~~~~-------~~~~~~l~i~G~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~--~e 289 (374)
T cd03817 224 FARLLK-------EEPDVKLVIVGDG-----PEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFAST--TE 289 (374)
T ss_pred HHHHHH-------hCCCeEEEEEeCC-----chHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEeccc--cc
Confidence 998765 3478999999998 5788899999999999999999986 789999999999999999 89
Q ss_pred ccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhH
Q 012132 370 CFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHH 449 (470)
Q Consensus 370 ~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~ 449 (470)
++|++++|||+||+|||+++.|+..|++.++.+|+++++.+ . +++++|.+++++++.++++++++++.+.+.+
T Consensus 290 ~~~~~~~Ea~~~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~--~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~---- 362 (374)
T cd03817 290 TQGLVLLEAMAAGLPVVAVDAPGLPDLVADGENGFLFPPGD--E-ALAEALLRLLQDPELRRRLSKNAEESAEKFS---- 362 (374)
T ss_pred CcChHHHHHHHcCCcEEEeCCCChhhheecCceeEEeCCCC--H-HHHHHHHHHHhChHHHHHHHHHHHHHHHHHH----
Confidence 99999999999999999999999999999999999999887 5 9999999999999999999999999997744
Q ss_pred HHHHHHHHHHH
Q 012132 450 MAERIAVVLKE 460 (470)
Q Consensus 450 ~~~~~~~~~~~ 460 (470)
++++++++|++
T Consensus 363 ~~~~~~~~~~~ 373 (374)
T cd03817 363 FAKKVEKLYEE 373 (374)
T ss_pred HHHHHHHHHhc
Confidence 66777777765
No 47
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=3.5e-36 Score=293.67 Aligned_cols=343 Identities=20% Similarity=0.159 Sum_probs=241.7
Q ss_pred EEEEEeeccCCC-chhHHHHHHHHHHHhC--CceEEEEecCCCCCchhHHHhhhhhh---hhcceeeEec--C--C----
Q 012132 76 LVLLVSHELSLS-GGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKM---WDRGVQVISA--K--G---- 141 (470)
Q Consensus 76 kIl~v~~~~~~~-G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~--~---- 141 (470)
.|.|++++...| ||||++.+.+.+|.+. ||+|+|+|.................+ ...++.++.. . .
T Consensus 2 ~~~f~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
T cd03806 2 TVGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEAS 81 (419)
T ss_pred eEEEECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccc
Confidence 589999999987 6699999999999998 89999999776543321111111111 1122332221 0 0
Q ss_pred -h----------------hhHHhhcCCcEEEEcccchhhh-HHHHhhhcCCccccceeeEEeeecc--ccc---------
Q 012132 142 -Q----------------ETINTALKADLIVLNTAVAGKW-LDAVLKEDVPRVLPNVLWWIHEMRG--HYF--------- 192 (470)
Q Consensus 142 -~----------------~~~~~~~~~DiV~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~~--~~~--------- 192 (470)
. .......+||+++.+++....+ +...+. ..|++.++|-... ..+
T Consensus 82 ~~~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~~~~~~------~~~~i~y~h~P~~~~d~l~~~~~~~~~ 155 (419)
T cd03806 82 TYPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFTYPLVRLLG------GCPVGAYVHYPTISTDMLQKVRSREAS 155 (419)
T ss_pred cCCceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHhc------CCeEEEEecCCcchHHHHHHHhhcccc
Confidence 0 0111235799999887554332 222222 1478888992100 111
Q ss_pred ----------------hh--------hhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhh
Q 012132 193 ----------------KL--------DYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAE 248 (470)
Q Consensus 193 ----------------~~--------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~ 248 (470)
+. .+.......+.++++|..+.+.+.+ .++. ..++.||+||+|.+.+.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~----~~~~-~~~~~vi~~gvd~~~~~~~~ 230 (419)
T cd03806 156 YNNSATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRS----LWKR-NTKPSIVYPPCDVEELLKLP 230 (419)
T ss_pred ccCccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHH----HhCc-CCCcEEEcCCCCHHHhcccc
Confidence 00 1122245677888888888777654 3332 24799999999988775432
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCc-ChHHHHH
Q 012132 249 DNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-QTKFESE 327 (470)
Q Consensus 249 ~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~-~~~~~~~ 327 (470)
. ....+..+|+++||+.+.||++.+++|++++.+..++. ..++++|+|+|++... +.++.++
T Consensus 231 ~---------------~~~~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~--~~~~~~lvivG~~~~~~~~~~~~~ 293 (419)
T cd03806 231 L---------------DEKTRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEE--IKEKIKLVLIGSCRNEDDEKRVED 293 (419)
T ss_pred c---------------ccccCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCccc--ccCceEEEEEcCCCCcccHHHHHH
Confidence 1 01245678999999999999999999999887632110 0136999999987432 2247788
Q ss_pred HHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCc-ceeee---cCc
Q 012132 328 LRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT-TEIVV---NGT 401 (470)
Q Consensus 328 l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~-~e~v~---~~~ 401 (470)
|+++++++++.++|+|+|.. +++..+|+.||++++||. .|+||++++||||||+|||+++.||. .|++. ++.
T Consensus 294 L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~--~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~ 371 (419)
T cd03806 294 LKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTMW--NEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGP 371 (419)
T ss_pred HHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECCc--cCCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCC
Confidence 99999999999999999985 789999999999999999 89999999999999999999998775 57887 789
Q ss_pred eeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHH
Q 012132 402 TGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAE 452 (470)
Q Consensus 402 ~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~ 452 (470)
+|++++ | +++++++|.+++++++...++..++++.+.++||++.+.+
T Consensus 372 ~G~l~~--d--~~~la~ai~~ll~~~~~~~~~~~~~~~~~~~~fs~~~f~~ 418 (419)
T cd03806 372 TGFLAS--T--AEEYAEAIEKILSLSEEERLRIRRAARSSVKRFSDEEFER 418 (419)
T ss_pred ceEEeC--C--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCHHHhcc
Confidence 999974 5 9999999999999655444334555666778899998753
No 48
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=2.3e-36 Score=292.26 Aligned_cols=330 Identities=16% Similarity=0.191 Sum_probs=235.6
Q ss_pred EEEEEeec-cCC--CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCCh----------
Q 012132 76 LVLLVSHE-LSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ---------- 142 (470)
Q Consensus 76 kIl~v~~~-~~~--~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 142 (470)
||++++.. +++ ||.++++.+++++|.++||+|+|++........ .....|+.++..+..
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~~~~~~~ 72 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQK--------ETEYNGVRLIHIPAPEIGGLGTIIY 72 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCc--------ccccCCceEEEcCCCCccchhhhHH
Confidence 68898765 333 677999999999999999999999965433211 111234444332211
Q ss_pred --hhHH----hhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc--h---hh-----hhcccccccce
Q 012132 143 --ETIN----TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF--K---LD-----YVKHLPLVAGA 206 (470)
Q Consensus 143 --~~~~----~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~--~---~~-----~~~~~~~~~~~ 206 (470)
..+. ...++|+||...+....+. ..... ...+++++.|+...... . .. ....+...+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~----~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~i 147 (363)
T cd04955 73 DILAILHALFVKRDIDHVHALGPAIAPFL-PLLRL----KGKKVVVNMDGLEWKRAKWGRPAKRYLKFGEKLAVKFADRL 147 (363)
T ss_pred HHHHHHHHHhccCCeEEEEecCccHHHHH-HHHHh----cCCCEEEEccCcceeecccccchhHHHHHHHHHHHhhccEE
Confidence 1111 1334455554444332221 11221 13578888887531110 0 11 11224456778
Q ss_pred eeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHH
Q 012132 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQD 286 (470)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~ 286 (470)
++.|....+.+.+ .++.+. .+||||+|...+.+. ...+++++++++. .++++||+.+.||++
T Consensus 148 i~~s~~~~~~~~~----~~~~~~---~~i~ngv~~~~~~~~----------~~~~~~~~~~~~~-~i~~~G~~~~~Kg~~ 209 (363)
T cd04955 148 IADSPGIKEYLKE----KYGRDS---TYIPYGADHVVSSEE----------DEILKKYGLEPGR-YYLLVGRIVPENNID 209 (363)
T ss_pred EeCCHHHHHHHHH----hcCCCC---eeeCCCcChhhcchh----------hhhHHhcCCCCCc-EEEEEecccccCCHH
Confidence 8888777766643 555432 899999998876431 1234455665444 577999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHH-hcCCCCcEEEeccc--CCHHHHHHhcCEEEEc
Q 012132 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM-QKKIQDRVHFVNKT--LTVAPYLAAIDVLVQN 363 (470)
Q Consensus 287 ~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~-~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~p 363 (470)
.+++|++++. ++++|+++|+|.. ...+.+.++ .+++.++|+|+|++ +++.++|+.+|++++|
T Consensus 210 ~li~a~~~l~----------~~~~l~ivG~~~~-----~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~p 274 (363)
T cd04955 210 DLIEAFSKSN----------SGKKLVIVGNADH-----NTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLH 274 (363)
T ss_pred HHHHHHHhhc----------cCceEEEEcCCCC-----cchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeC
Confidence 9999998762 3799999999842 233333333 56778899999986 6788999999999999
Q ss_pred cCCcc-cccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 012132 364 SQAWG-ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK 442 (470)
Q Consensus 364 S~~~~-E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 442 (470)
|. . |+||++++|||+||+|||+|+.|+..|++.+ +|.+++++| . ++++|.+++++++.+.++++++++.+.
T Consensus 275 s~--~~e~~~~~~~EAma~G~PvI~s~~~~~~e~~~~--~g~~~~~~~--~--l~~~i~~l~~~~~~~~~~~~~~~~~~~ 346 (363)
T cd04955 275 GH--SVGGTNPSLLEAMAYGCPVLASDNPFNREVLGD--KAIYFKVGD--D--LASLLEELEADPEEVSAMAKAARERIR 346 (363)
T ss_pred Cc--cCCCCChHHHHHHHcCCCEEEecCCccceeecC--CeeEecCch--H--HHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 99 6 9999999999999999999999999999955 789998765 4 999999999999999999999999999
Q ss_pred HHcChhHHHHHHHHHHH
Q 012132 443 EIFQEHHMAERIAVVLK 459 (470)
Q Consensus 443 ~~fs~~~~~~~~~~~~~ 459 (470)
++|||+.++++++++|+
T Consensus 347 ~~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 347 EKYTWEKIADQYEELYK 363 (363)
T ss_pred HhCCHHHHHHHHHHHhC
Confidence 99999999999999984
No 49
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=100.00 E-value=1.4e-36 Score=293.19 Aligned_cols=351 Identities=25% Similarity=0.264 Sum_probs=269.0
Q ss_pred EEEEEeeccCC--CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceee--------EecCChhhH
Q 012132 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--------ISAKGQETI 145 (470)
Q Consensus 76 kIl~v~~~~~~--~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 145 (470)
||+++++.+++ ||+..++.++++.|.+.||+|.+++......................... .........
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRL 80 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHH
Confidence 68999998765 56689999999999999999999996554322111000000000000000 001112344
Q ss_pred HhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch-----------hhhhcccccccceeeeehhhH
Q 012132 146 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-----------LDYVKHLPLVAGAMIDSHVTA 214 (470)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~-----------~~~~~~~~~~~~~~~~s~~~~ 214 (470)
....+||+||++.............. ...+++++.|+....... ......+...+.+++.+....
T Consensus 81 ~~~~~~Dii~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~ 156 (374)
T cd03801 81 LRRERFDVVHAHDWLALLAAALAARL----LGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATR 156 (374)
T ss_pred hhhcCCcEEEEechhHHHHHHHHHHh----cCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHH
Confidence 45679999999987655443311111 225788999987544321 122334556778888888777
Q ss_pred HHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHH
Q 012132 215 EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYE 294 (470)
Q Consensus 215 ~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~ 294 (470)
+.+.+ .++.+..++.++|||++...+.+.. ...+.......+.++++++|++.+.||++.+++++..
T Consensus 157 ~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~ 223 (374)
T cd03801 157 EELRE----LGGVPPEKITVIPNGVDTERFRPAP---------RAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALAK 223 (374)
T ss_pred HHHHh----cCCCCCCcEEEecCcccccccCccc---------hHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHHHH
Confidence 66654 4454557899999999998775432 1223344455677899999999999999999999998
Q ss_pred HHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccc
Q 012132 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFG 372 (470)
Q Consensus 295 l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g 372 (470)
+.+ +.++++|+++|++ +....+++.+++++..++|.+.|+. +++.++|+.||++++|+. .|++|
T Consensus 224 ~~~-------~~~~~~l~i~G~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~--~~~~~ 289 (374)
T cd03801 224 LRK-------EYPDVRLVIVGDG-----PLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSL--YEGFG 289 (374)
T ss_pred Hhh-------hcCCeEEEEEeCc-----HHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecch--hcccc
Confidence 865 3478999999987 6888889998889999999999987 899999999999999999 89999
Q ss_pred hHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHH
Q 012132 373 RITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAE 452 (470)
Q Consensus 373 ~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~ 452 (470)
++++|||++|+|||+++.++..|++.++.+|+++++.| +++++++|.++++|++.+.++++++++.+.+.|+|+++++
T Consensus 290 ~~~~Ea~~~g~pvI~~~~~~~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (374)
T cd03801 290 LVLLEAMAAGLPVVASDVGGIPEVVEDGETGLLVPPGD--PEALAEAILRLLDDPELRRRLGEAARERVAERFSWDRVAA 367 (374)
T ss_pred chHHHHHHcCCcEEEeCCCChhHHhcCCcceEEeCCCC--HHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999999999899999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 012132 453 RIAVVLK 459 (470)
Q Consensus 453 ~~~~~~~ 459 (470)
++.++|+
T Consensus 368 ~~~~~~~ 374 (374)
T cd03801 368 RTEEVYY 374 (374)
T ss_pred HHHHhhC
Confidence 9998874
No 50
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=3.3e-36 Score=294.21 Aligned_cols=347 Identities=13% Similarity=0.070 Sum_probs=241.4
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChh---------
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE--------- 143 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 143 (470)
+.++|++++... .|++.++..++++|+++||+|+|++...+... .+.....|+.++......
T Consensus 2 ~~~~~~~~~~~~--~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~~~ 72 (415)
T cd03816 2 KRKRVCVLVLGD--IGRSPRMQYHALSLAKHGWKVDLVGYLETPPH-------DEILSNPNITIHPLPPPPQRLNKLPFL 72 (415)
T ss_pred CccEEEEEEecc--cCCCHHHHHHHHHHHhcCceEEEEEecCCCCC-------HHHhcCCCEEEEECCCCccccccchHH
Confidence 356788888633 56677789999999999999999996543321 111223455554432110
Q ss_pred ----------------hHHhhcCCcEEEEcccchh--hhHHHHhhhcCCccccceeeEEeeecccc----------c---
Q 012132 144 ----------------TINTALKADLIVLNTAVAG--KWLDAVLKEDVPRVLPNVLWWIHEMRGHY----------F--- 192 (470)
Q Consensus 144 ----------------~~~~~~~~DiV~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~~~~----------~--- 192 (470)
.+....+||+||+|++... .+...+..... ..|++.++|+..... .
T Consensus 73 ~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~---~~~~V~~~h~~~~~~~~~~~~~~~~~~~~ 149 (415)
T cd03816 73 LFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLR---RTKLIIDWHNYGYTILALKLGENHPLVRL 149 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh---CCeEEEEcCCchHHHHhcccCCCCHHHHH
Confidence 1234468999999875432 11222222211 257888888753210 0
Q ss_pred -hhhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHH---------
Q 012132 193 -KLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRE--------- 262 (470)
Q Consensus 193 -~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~--------- 262 (470)
.......++..+.+++.|..+.+.+.+ ++.+.+++.|||||. ...|.+.+.... +...++
T Consensus 150 ~~~~e~~~~~~ad~ii~vS~~~~~~l~~-----~~~~~~ki~vI~Ng~-~~~f~p~~~~~~----~~~~~~~~~~~~~~~ 219 (415)
T cd03816 150 AKWYEKLFGRLADYNLCVTKAMKEDLQQ-----FNNWKIRATVLYDRP-PEQFRPLPLEEK----HELFLKLAKTFLTRE 219 (415)
T ss_pred HHHHHHHHhhcCCEeeecCHHHHHHHHh-----hhccCCCeeecCCCC-HHHceeCcHHHH----HHHHHhccccccccc
Confidence 000112345678888888888766542 567889999999994 455655432111 111111
Q ss_pred ----HcCC-CCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCC
Q 012132 263 ----SLGV-RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 337 (470)
Q Consensus 263 ----~~~~-~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l 337 (470)
..++ +++..+++++||+.+.||++.+++|++.+.+...+ +.++|+++|+|+|+| +..++++++++++++
T Consensus 220 ~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~-~~~~~~i~l~ivG~G-----~~~~~l~~~~~~~~l 293 (415)
T cd03816 220 LRIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSAAT-GPKLPKLLCIITGKG-----PLKEKYLERIKELKL 293 (415)
T ss_pred cccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhhcc-cccCCCEEEEEEecC-----ccHHHHHHHHHHcCC
Confidence 1122 23456788899999999999999999988643211 012478999999999 578999999999999
Q ss_pred CCcEEEeccc--CCHHHHHHhcCEEEEccCC-cccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChH
Q 012132 338 QDRVHFVNKT--LTVAPYLAAIDVLVQNSQA-WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGIT 414 (470)
Q Consensus 338 ~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~-~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~ 414 (470)
.+.+.+.|+. +++..+|++||+++.|+.. ..|++|++++||||||+|||+++.||..|++.++.+|++++ | ++
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~~~G~lv~--d--~~ 369 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKHGENGLVFG--D--SE 369 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcCCCCEEEEC--C--HH
Confidence 7555555764 8999999999999975321 15789999999999999999999999999999999999994 6 99
Q ss_pred HHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHcChhHHHHH
Q 012132 415 PLAKNIVKLATH---VERRLTMGKRGYERVKEIFQEHHMAER 453 (470)
Q Consensus 415 ~la~~i~~ll~~---~~~~~~~~~~a~~~~~~~fs~~~~~~~ 453 (470)
+++++|.++++| ++.+++|+++++++.+ ++|++..++
T Consensus 370 ~la~~i~~ll~~~~~~~~~~~m~~~~~~~~~--~~~~~~~~~ 409 (415)
T cd03816 370 ELAEQLIDLLSNFPNRGKLNSLKKGAQEESE--LRWDENWDR 409 (415)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh--cCHHHHHHH
Confidence 999999999999 8999999999999873 566554443
No 51
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=100.00 E-value=5.5e-36 Score=288.16 Aligned_cols=331 Identities=22% Similarity=0.267 Sum_probs=249.5
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC---------------
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--------------- 140 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 140 (470)
||+++++. .||.+.+...++++|.+.||+|++++....... .....++.++...
T Consensus 1 kIl~i~~~--~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (359)
T cd03808 1 KILHIVTV--DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE---------ELEALGVKVIPIPLDRRGINPFKDLKAL 69 (359)
T ss_pred CeeEEEec--chhHHHHHHHHHHHHHhcCCeeEEEecCCCccc---------ccccCCceEEeccccccccChHhHHHHH
Confidence 68999987 567789999999999999999999996654321 1112233322211
Q ss_pred -ChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch---------hhhhcccccccceeeee
Q 012132 141 -GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK---------LDYVKHLPLVAGAMIDS 210 (470)
Q Consensus 141 -~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~---------~~~~~~~~~~~~~~~~s 210 (470)
......+..+||+||++......+....... . ..+++++..|+....... ......+...+.+++.|
T Consensus 70 ~~~~~~~~~~~~dvv~~~~~~~~~~~~~~~~~-~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 146 (359)
T cd03808 70 LRLYRLLRKERPDIVHTHTPKPGILGRLAARL-A--GVPKVIYTVHGLGFVFTSGGLKRRLYLLLERLALRFTDKVIFQN 146 (359)
T ss_pred HHHHHHHHhcCCCEEEEccccchhHHHHHHHH-c--CCCCEEEEecCcchhhccchhHHHHHHHHHHHHHhhccEEEEcC
Confidence 1223445689999999975544332222221 1 124566777765322211 11223345567788888
Q ss_pred hhhHHHHHHhhhhhhccC-CCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHH
Q 012132 211 HVTAEYWKNRTRERLRIK-MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (470)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~-~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll 289 (470)
....+.+.+. ...+ ..++.+++||+|.+.+.+.... .+.++++++++|++.+.||++.++
T Consensus 147 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~i~~~G~~~~~k~~~~li 207 (359)
T cd03808 147 EDDRDLALKL----GIIKKKKTVLIPGSGVDLDRFSPSPEP---------------IPEDDPVFLFVARLLKDKGIDELL 207 (359)
T ss_pred HHHHHHHHHh----cCCCcCceEEecCCCCChhhcCccccc---------------cCCCCcEEEEEeccccccCHHHHH
Confidence 8777666542 2222 4668888999998877544210 125678999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHH-HHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcc
Q 012132 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRN-YVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWG 368 (470)
Q Consensus 290 ~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~-~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~ 368 (470)
+++..+.+ +.++++|+|+|.+... ..... .+.+++..++|.++|+.+++.++|+.||++++||. .
T Consensus 208 ~~~~~l~~-------~~~~~~l~i~G~~~~~-----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~i~ps~--~ 273 (359)
T cd03808 208 EAARILKA-------KGPNVRLLLVGDGDEE-----NPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADVFVLPSY--R 273 (359)
T ss_pred HHHHHHHh-------cCCCeEEEEEcCCCcc-----hhhHHHHHHhcCCcceEEEeeccccHHHHHHhccEEEecCc--c
Confidence 99998754 3589999999998532 22222 36667778899999999999999999999999999 8
Q ss_pred cccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChh
Q 012132 369 ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEH 448 (470)
Q Consensus 369 E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~ 448 (470)
|++|++++|||++|+|||+++.++..|++.++.+|++++++| +++++++|.+++.|++.+.++++++++++.++|+|+
T Consensus 274 e~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~~~~~g~~~~~~~--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 351 (359)
T cd03808 274 EGLPRVLLEAMAMGRPVIATDVPGCREAVIDGVNGFLVPPGD--AEALADAIERLIEDPELRARMGQAARKRAEEEFDEE 351 (359)
T ss_pred cCcchHHHHHHHcCCCEEEecCCCchhhhhcCcceEEECCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHH
Confidence 999999999999999999999999999999899999999988 999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 012132 449 HMAERIA 455 (470)
Q Consensus 449 ~~~~~~~ 455 (470)
.+++++.
T Consensus 352 ~~~~~~~ 358 (359)
T cd03808 352 IVVKKLL 358 (359)
T ss_pred HHHHHhh
Confidence 9998875
No 52
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=100.00 E-value=2.2e-36 Score=290.14 Aligned_cols=337 Identities=24% Similarity=0.285 Sum_probs=257.0
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcce------eeEecCChhhHHhhc
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV------QVISAKGQETINTAL 149 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 149 (470)
||+++++.+..||+++++..++++|.+.||+|.+++....................... ............+..
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 68999999888888999999999999999999999965443221111000000000000 001111234455667
Q ss_pred CCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchh------hhhcccccccceeeeehhhHHHHHHhhhh
Q 012132 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL------DYVKHLPLVAGAMIDSHVTAEYWKNRTRE 223 (470)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 223 (470)
+||+||++.......+.. ..... ..+++++.|+........ .....+...+.+++.|....+.+.+
T Consensus 81 ~~dii~~~~~~~~~~~~~-~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~---- 152 (353)
T cd03811 81 KPDVVISHLTTTPNVLAL-LAARL---GTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLK---- 152 (353)
T ss_pred CCCEEEEcCccchhHHHH-HHhhc---CCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHH----
Confidence 999999998711222222 22211 368889999876443221 2344567788888888888776665
Q ss_pred hhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhc
Q 012132 224 RLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKK 303 (470)
Q Consensus 224 ~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~ 303 (470)
.++.+..++.++|||+|.+.+.+.... . . .++.+.++++++++|++.+.||++.+++++..+.+
T Consensus 153 ~~~~~~~~~~vi~~~~~~~~~~~~~~~-------~-~--~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~------ 216 (353)
T cd03811 153 LLGIPPDKIEVIYNPIDIEEIRALAEE-------P-L--ELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRK------ 216 (353)
T ss_pred hhcCCccccEEecCCcChhhcCcccch-------h-h--hcCCCCCceEEEEEecchhhcChHHHHHHHHHhhh------
Confidence 455556789999999999877554321 0 0 34556778999999999999999999999998865
Q ss_pred ccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCC
Q 012132 304 LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL 383 (470)
Q Consensus 304 ~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~ 383 (470)
+.++++|+++|.+ +..+.+++.++++++.++|.+.|+.+++.++|+.||++++||. .|++|++++|||++|+
T Consensus 217 -~~~~~~l~i~G~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~ps~--~e~~~~~~~Ea~~~G~ 288 (353)
T cd03811 217 -EGPDARLVILGDG-----PLREELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSR--YEGFPNVLLEAMALGT 288 (353)
T ss_pred -cCCCceEEEEcCC-----ccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCEEEeCcc--cCCCCcHHHHHHHhCC
Confidence 3478999999998 5678888999999999999999999999999999999999999 8999999999999999
Q ss_pred CEEecCCCCcceeeecCceeeeecCCCCChHHH---HHHHHHHHhCHHHHHHHHHHHHHHHHHHcC
Q 012132 384 PVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPL---AKNIVKLATHVERRLTMGKRGYERVKEIFQ 446 (470)
Q Consensus 384 PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~l---a~~i~~ll~~~~~~~~~~~~a~~~~~~~fs 446 (470)
|||+++.|+..|++.++.+|++++++| .+++ .+++..+.++++.+.++++++++.+.++|+
T Consensus 289 PvI~~~~~~~~e~i~~~~~g~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (353)
T cd03811 289 PVVATDCPGPREILEDGENGLLVPVGD--EAALAAAALALLDLLLDPELRERLAAAARERVAREYS 352 (353)
T ss_pred CEEEcCCCChHHHhcCCCceEEECCCC--HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999988 8888 788888888999999999988888888886
No 53
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=5.6e-36 Score=292.22 Aligned_cols=340 Identities=16% Similarity=0.137 Sum_probs=237.1
Q ss_pred EEEEeeccC--C-CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEe---------------
Q 012132 77 VLLVSHELS--L-SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS--------------- 138 (470)
Q Consensus 77 Il~v~~~~~--~-~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 138 (470)
||++++.+| + +|+...+.+++++|++. |+|++++.............+..... .+.+++
T Consensus 1 iL~~~~~~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~l~ 77 (397)
T TIGR03087 1 ILYLVHRIPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVDDPEDWQYAAALRPLCE--EVCVVPLDPRVARLRSLLGLL 77 (397)
T ss_pred CeeecCCCCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCCCcccHHHHHHHHHHhh--eeEEeecCcHHHHHHHHhhhc
Confidence 689999864 3 77789999999999776 99999996543322211111111111 111111
Q ss_pred -----------cC----ChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc----------h
Q 012132 139 -----------AK----GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF----------K 193 (470)
Q Consensus 139 -----------~~----~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~----------~ 193 (470)
.. ..+.+.+..++|+||+++.....++.. .. ...|.+++.|+.....+ .
T Consensus 78 ~~~p~~~~~~~~~~~~~~l~~~~~~~~~D~v~~~~~~~~~~~~~----~~--~~~p~i~~~~d~~~~~~~~~~~~~~~~~ 151 (397)
T TIGR03087 78 TGEPLSLPYYRSRRLARWVNALLAAEPVDAIVVFSSAMAQYVTP----HV--RGVPRIVDFVDVDSDKWLQYARTKRWPL 151 (397)
T ss_pred CCCCCcchhhCCHHHHHHHHHHHhhCCCCEEEEeccccceeccc----cc--cCCCeEeehhhHHHHHHHHHHhccCcch
Confidence 00 112334457999999997654433221 01 12466777776421110 0
Q ss_pred h------------hhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHH
Q 012132 194 L------------DYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVR 261 (470)
Q Consensus 194 ~------------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r 261 (470)
. .....+..++.+++.|....+.+.+ ..+....++.+||||+|.+.|.+....
T Consensus 152 ~~~~~~~~~~~~~~e~~~~~~ad~vi~~S~~~~~~l~~----~~~~~~~~v~vipngvd~~~f~~~~~~----------- 216 (397)
T TIGR03087 152 RWIYRREGRLLLAYERAIAARFDAATFVSRAEAELFRR----LAPEAAGRITAFPNGVDADFFSPDRDY----------- 216 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHhhCCeEEEcCHHHHHHHHH----hCCCCCCCeEEeecccchhhcCCCccc-----------
Confidence 0 0112345677788888777666543 334456789999999999988654211
Q ss_pred HHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcE
Q 012132 262 ESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV 341 (470)
Q Consensus 262 ~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V 341 (470)
.-.++.+..+++|+|++.+.||++.+++++.++...+.+ +.|+++|+|+|+|+ . .+++ +++..++|
T Consensus 217 -~~~~~~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~---~~p~~~l~ivG~g~-----~-~~~~----~l~~~~~V 282 (397)
T TIGR03087 217 -PNPYPPGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRA---RRPAAEFYIVGAKP-----S-PAVR----ALAALPGV 282 (397)
T ss_pred -cCCCCCCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHH---HCCCcEEEEECCCC-----h-HHHH----HhccCCCe
Confidence 011234567899999999999999998655444333332 35899999999983 2 2333 34445689
Q ss_pred EEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHH
Q 012132 342 HFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIV 421 (470)
Q Consensus 342 ~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~ 421 (470)
+|+|+++++..+|+.||++|+||. +.||+|++++|||+||+|||+|+.++- .+...+++|++++ +| +++++++|.
T Consensus 283 ~~~G~v~~~~~~~~~adv~v~Ps~-~~eG~~~~~lEAma~G~PVV~t~~~~~-~i~~~~~~g~lv~-~~--~~~la~ai~ 357 (397)
T TIGR03087 283 TVTGSVADVRPYLAHAAVAVAPLR-IARGIQNKVLEAMAMAKPVVASPEAAE-GIDALPGAELLVA-AD--PADFAAAIL 357 (397)
T ss_pred EEeeecCCHHHHHHhCCEEEeccc-ccCCcccHHHHHHHcCCCEEecCcccc-cccccCCcceEeC-CC--HHHHHHHHH
Confidence 999999999999999999999997 369999999999999999999997542 3333456788887 66 999999999
Q ss_pred HHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Q 012132 422 KLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 422 ~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 459 (470)
++++|++.+++|++++++++.++|||+.+++++.++|+
T Consensus 358 ~ll~~~~~~~~~~~~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 358 ALLANPAEREELGQAARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999885
No 54
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=100.00 E-value=1.5e-35 Score=285.76 Aligned_cols=335 Identities=19% Similarity=0.186 Sum_probs=242.5
Q ss_pred EEEEEeeccCC---CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhh-------cce-----e---e-
Q 012132 76 LVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD-------RGV-----Q---V- 136 (470)
Q Consensus 76 kIl~v~~~~~~---~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~-------~~~-----~---~- 136 (470)
|||++++.+++ ||+++++.+++++|.++||+|++++.................... ... . .
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDYD 80 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccccceeeccccccccCCCchhhhhHHHhcc
Confidence 69999998875 566899999999999999999999965443221100000000000 000 0 0
Q ss_pred --EecCChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhH
Q 012132 137 --ISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTA 214 (470)
Q Consensus 137 --~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 214 (470)
........+.+..+||+||++............... ...|++.+.|+.......... .....+.+++.|....
T Consensus 81 ~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~---~~~~~i~~~hd~~~~~~~~~~--~~~~~d~ii~~s~~~~ 155 (359)
T cd03823 81 NPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARD---RGIPIVLTLHDYWLICPRQGL--FKKGGDAVIAPSRFLL 155 (359)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHh---cCCCEEEEEeeeeeecchhhh--hccCCCEEEEeCHHHH
Confidence 000112344566899999999863222111111111 125788889976432211111 1122377788887776
Q ss_pred HHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHH
Q 012132 215 EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYE 294 (470)
Q Consensus 215 ~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~ 294 (470)
+.+.+ .+....++.+++||+|...+.+... +.+.++++++++|++.+.||++.+++++..
T Consensus 156 ~~~~~-----~~~~~~~~~vi~n~~~~~~~~~~~~---------------~~~~~~~~i~~~G~~~~~k~~~~li~~~~~ 215 (359)
T cd03823 156 DRYVA-----NGLFAEKISVIRNGIDLDRAKRPRR---------------APPGGRLRFGFIGQLTPHKGVDLLLEAFKR 215 (359)
T ss_pred HHHHH-----cCCCccceEEecCCcChhhcccccc---------------CCCCCceEEEEEecCccccCHHHHHHHHHH
Confidence 66553 2333568999999999988754321 234677899999999999999999999998
Q ss_pred HHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccc
Q 012132 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFG 372 (470)
Q Consensus 295 l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g 372 (470)
+.+ ++++|+++|.+. ......... +..++|+++|+. +++.++|+.||++++||. +.|++|
T Consensus 216 l~~---------~~~~l~i~G~~~-----~~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~-~~e~~~ 277 (359)
T cd03823 216 LPR---------GDIELVIVGNGL-----ELEEESYEL---EGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSI-WPENFP 277 (359)
T ss_pred HHh---------cCcEEEEEcCch-----hhhHHHHhh---cCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCc-ccCCCC
Confidence 743 689999999983 333322222 556799999987 899999999999999997 379999
Q ss_pred hHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHH
Q 012132 373 RITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAE 452 (470)
Q Consensus 373 ~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~ 452 (470)
++++|||+||+|||+++.++..|++.++.+|++++++| +++++++|.++++|++.++.+++++++.... +++++
T Consensus 278 ~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~----~~~~~ 351 (359)
T cd03823 278 LVIREALAAGVPVIASDIGGMAELVRDGVNGLLFPPGD--AEDLAAALERLIDDPDLLERLRAGIEPPRSI----EDQAE 351 (359)
T ss_pred hHHHHHHHCCCCEEECCCCCHHHHhcCCCcEEEECCCC--HHHHHHHHHHHHhChHHHHHHHHhHHHhhhH----HHHHH
Confidence 99999999999999999999999999988999999998 9999999999999999999999999886643 89999
Q ss_pred HHHHHHH
Q 012132 453 RIAVVLK 459 (470)
Q Consensus 453 ~~~~~~~ 459 (470)
+++++|+
T Consensus 352 ~~~~~~~ 358 (359)
T cd03823 352 EYLKLYR 358 (359)
T ss_pred HHHHHhh
Confidence 9999886
No 55
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=100.00 E-value=1.6e-36 Score=293.43 Aligned_cols=340 Identities=18% Similarity=0.131 Sum_probs=250.4
Q ss_pred EEEEEeeccCC---CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhh-h-hcceee-----EecCChhhH
Q 012132 76 LVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKM-W-DRGVQV-----ISAKGQETI 145 (470)
Q Consensus 76 kIl~v~~~~~~---~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~-~-~~~~~~-----~~~~~~~~~ 145 (470)
||++++.++.+ ||+++++.+++++|.+.||+|++++.................. . ...... .........
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRLL 80 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHHH
Confidence 68899988766 7779999999999999999999999654432211110000000 0 000000 000111222
Q ss_pred HhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch------------hhhhcccccccceeeeehhh
Q 012132 146 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK------------LDYVKHLPLVAGAMIDSHVT 213 (470)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~------------~~~~~~~~~~~~~~~~s~~~ 213 (470)
....++|+||+++...... .....++++++|+....... ......+...+.+++.|...
T Consensus 81 ~~~~~~Dii~~~~~~~~~~---------~~~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~ 151 (365)
T cd03809 81 LLLLGLDLLHSPHNTAPLL---------RLRGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEAT 151 (365)
T ss_pred hhhcCCCeeeecccccCcc---------cCCCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccHHH
Confidence 3447899999998655443 11235788899986432211 12233345667788888777
Q ss_pred HHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHH
Q 012132 214 AEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFY 293 (470)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~ 293 (470)
.+.+.+ .++.+..++.++|||+|...+...... . +.+.....++++++++|++.+.||++.+++++.
T Consensus 152 ~~~~~~----~~~~~~~~~~vi~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~i~~~G~~~~~K~~~~~l~~~~ 218 (365)
T cd03809 152 KRDLLR----YLGVPPDKIVVIPLGVDPRFRPPPAEA--------E-VLRALYLLPRPYFLYVGTIEPRKNLERLLEAFA 218 (365)
T ss_pred HHHHHH----HhCcCHHHEEeeccccCccccCCCchH--------H-HHHHhcCCCCCeEEEeCCCccccCHHHHHHHHH
Confidence 666554 566667789999999999887654321 1 333444567889999999999999999999999
Q ss_pred HHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCccccc
Q 012132 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECF 371 (470)
Q Consensus 294 ~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~ 371 (470)
.+.+ ..++++|+++|.+... .....+..+++++.++|+++|+. +++.++|+.+|++++||. .|++
T Consensus 219 ~~~~-------~~~~~~l~i~G~~~~~----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~--~e~~ 285 (365)
T cd03809 219 RLPA-------KGPDPKLVIVGKRGWL----NEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSL--YEGF 285 (365)
T ss_pred HHHH-------hcCCCCEEEecCCccc----cHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccch--hccC
Confidence 8865 3357999999987432 22333333677888999999987 889999999999999999 8999
Q ss_pred chHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHH
Q 012132 372 GRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMA 451 (470)
Q Consensus 372 g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~ 451 (470)
|++++|||++|+|||+++.|+..|++ +.+|+++++.| +++++++|.++++|++.+..+++++++.+ +.|+|++++
T Consensus 286 ~~~~~Ea~a~G~pvI~~~~~~~~e~~--~~~~~~~~~~~--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~-~~~sw~~~~ 360 (365)
T cd03809 286 GLPVLEAMACGTPVIASNISSLPEVA--GDAALYFDPLD--PEALAAAIERLLEDPALREELRERGLARA-KRFSWEKTA 360 (365)
T ss_pred CCCHHHHhcCCCcEEecCCCCcccee--cCceeeeCCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HhCCHHHHH
Confidence 99999999999999999999999998 45789999888 99999999999999999999999999766 569999999
Q ss_pred HHHH
Q 012132 452 ERIA 455 (470)
Q Consensus 452 ~~~~ 455 (470)
+++.
T Consensus 361 ~~~~ 364 (365)
T cd03809 361 RRTL 364 (365)
T ss_pred HHHh
Confidence 9876
No 56
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=100.00 E-value=1.4e-35 Score=289.04 Aligned_cols=345 Identities=21% Similarity=0.209 Sum_probs=256.1
Q ss_pred EEEEEeeccCC--CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC------------
Q 012132 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------------ 141 (470)
Q Consensus 76 kIl~v~~~~~~--~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 141 (470)
|||++++.+++ ||++.++.+++++|.++||+|++++............. .......++.++....
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKG-YKREEVDGVRVHRVPLPPYKKNGLLKRL 79 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCccccccccc-ceEEecCCeEEEEEecCCCCccchHHHH
Confidence 69999998776 77799999999999999999999996543322111000 0000112333222110
Q ss_pred ---------hhhHH--hhcCCcEEEEcccchh-hhHHHHhhhcCCccccceeeEEeeeccccc----------------h
Q 012132 142 ---------QETIN--TALKADLIVLNTAVAG-KWLDAVLKEDVPRVLPNVLWWIHEMRGHYF----------------K 193 (470)
Q Consensus 142 ---------~~~~~--~~~~~DiV~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~----------------~ 193 (470)
..... ...+||+||++++... .......... ...++++++|+...... .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~---~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 156 (394)
T cd03794 80 LNYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLARL---KGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLR 156 (394)
T ss_pred HhhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHHh---cCCCEEEEehhhcchhHHHccCccccchHHHHHH
Confidence 00111 3678999999983322 2222222221 12578899997643221 1
Q ss_pred hhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEE
Q 012132 194 LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLF 273 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i 273 (470)
......+...+.+++.+....+.+. ..+.+..++.++|||++...+.+.... .. +.+...+.+++++
T Consensus 157 ~~~~~~~~~~d~vi~~s~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~i 223 (394)
T cd03794 157 KLERLIYRRADAIVVISPGMREYLV-----RRGVPPEKISVIPNGVDLELFKPPPAD-------ES-LRKELGLDDKFVV 223 (394)
T ss_pred HHHHHHHhcCCEEEEECHHHHHHHH-----hcCCCcCceEEcCCCCCHHHcCCccch-------hh-hhhccCCCCcEEE
Confidence 1112334566778888887766554 346677889999999999877654321 11 3445555778999
Q ss_pred EEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHH
Q 012132 274 AIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVA 351 (470)
Q Consensus 274 ~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~ 351 (470)
+++|++.+.||++.+++++.++.+ . ++++|+++|+| +..+.+++.+...++ ++|.++|+. +++.
T Consensus 224 ~~~G~~~~~k~~~~l~~~~~~l~~-------~-~~~~l~i~G~~-----~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~ 289 (394)
T cd03794 224 LYAGNIGRAQGLDTLLEAAALLKD-------R-PDIRFLIVGDG-----PEKEELKELAKALGL-DNVTFLGRVPKEELP 289 (394)
T ss_pred EEecCcccccCHHHHHHHHHHHhh-------c-CCeEEEEeCCc-----ccHHHHHHHHHHcCC-CcEEEeCCCChHHHH
Confidence 999999999999999999998854 2 68999999998 466777777766666 579999975 7899
Q ss_pred HHHHhcCEEEEccCCccccc-----chHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 352 PYLAAIDVLVQNSQAWGECF-----GRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 352 ~~~~~aDv~v~pS~~~~E~~-----g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
++|+.||++++||. .|++ |++++|||++|+|||+++.++..+++.++.+|++++++| +++++++|.++++|
T Consensus 290 ~~~~~~di~i~~~~--~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~ 365 (394)
T cd03794 290 ELLAAADVGLVPLK--PGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEEAGAGLVVPPGD--PEALAAAILELLDD 365 (394)
T ss_pred HHHHhhCeeEEecc--CcccccccCchHHHHHHHCCCcEEEecCCCchhhhccCCcceEeCCCC--HHHHHHHHHHHHhC
Confidence 99999999999999 6765 888999999999999999999999998888999999988 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcChhHHHHHHH
Q 012132 427 VERRLTMGKRGYERVKEIFQEHHMAERIA 455 (470)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 455 (470)
++.++++++++++++.++|||+.++++|+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 394 (394)
T cd03794 366 PEERAEMGENGRRYVEEKFSREKLAERLL 394 (394)
T ss_pred hHHHHHHHHHHHHHHHHhhcHHHHHHhcC
Confidence 99999999999999998999999998863
No 57
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=100.00 E-value=2.5e-35 Score=285.23 Aligned_cols=350 Identities=26% Similarity=0.340 Sum_probs=266.2
Q ss_pred EEEEeeccCC---CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhh------hhhhhcceee--------Eec
Q 012132 77 VLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLE------HKMWDRGVQV--------ISA 139 (470)
Q Consensus 77 Il~v~~~~~~---~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~--------~~~ 139 (470)
||++++.+++ ||++.++.++++.|.+.||+|++++............... .......... ...
T Consensus 1 iLii~~~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (377)
T cd03798 1 ILVISSLYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAA 80 (377)
T ss_pred CeEeccCCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHH
Confidence 6888888876 6778999999999999999999999654432221110000 0000000000 001
Q ss_pred CChhhHHh--hcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch------hhhhcccccccceeeeeh
Q 012132 140 KGQETINT--ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK------LDYVKHLPLVAGAMIDSH 211 (470)
Q Consensus 140 ~~~~~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~------~~~~~~~~~~~~~~~~s~ 211 (470)
........ ..+||+||++......+......... ..+++++.|+....... ......+..++.+++.|.
T Consensus 81 ~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~---~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~ 157 (377)
T cd03798 81 RALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKL---GIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSE 157 (377)
T ss_pred HHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHhc---CCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCH
Confidence 12234445 78999999997655444443333221 25788888876543322 223344567788888888
Q ss_pred hhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHH
Q 012132 212 VTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 291 (470)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a 291 (470)
...+.+.+ . +.+..++.+++||+|...+.+.... .. ++.+...+.++++++|++.+.||++.++++
T Consensus 158 ~~~~~~~~----~-~~~~~~~~~i~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~i~~~g~~~~~k~~~~li~~ 223 (377)
T cd03798 158 ALADELKA----L-GIDPEKVTVIPNGVDTERFSPADRA-------EA--RKLGLPEDKKVILFVGRLVPRKGIDYLIEA 223 (377)
T ss_pred HHHHHHHH----h-cCCCCceEEcCCCcCcccCCCcchH-------HH--HhccCCCCceEEEEeccCccccCHHHHHHH
Confidence 77776654 2 2567889999999999887654321 01 344555678999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCccc
Q 012132 292 FYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGE 369 (470)
Q Consensus 292 ~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E 369 (470)
+..+.+ +.++++++++|.+ +..+.+++.++++++.++|.+.|+. +++.++|+.||++++||. .|
T Consensus 224 ~~~~~~-------~~~~~~l~i~g~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~--~~ 289 (377)
T cd03798 224 LARLLK-------KRPDVHLVIVGDG-----PLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSL--RE 289 (377)
T ss_pred HHHHHh-------cCCCeEEEEEcCC-----cchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchh--hc
Confidence 998855 3478999999998 4667788888888998999999986 679999999999999999 89
Q ss_pred ccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhH
Q 012132 370 CFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHH 449 (470)
Q Consensus 370 ~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~ 449 (470)
++|++++|||++|+|||+++.++..+++.++.+|++++++| +++++++|.+++++++. ++++++++.+.+.|+|+.
T Consensus 290 ~~~~~~~Ea~~~G~pvI~~~~~~~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~--~~~~~~~~~~~~~~s~~~ 365 (377)
T cd03798 290 GFGLVLLEAMACGLPVVATDVGGIPEIITDGENGLLVPPGD--PEALAEAILRLLADPWL--RLGRAARRRVAERFSWEN 365 (377)
T ss_pred cCChHHHHHHhcCCCEEEecCCChHHHhcCCcceeEECCCC--HHHHHHHHHHHhcCcHH--HHhHHHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999998 99999999999999876 788889999999999999
Q ss_pred HHHHHHHHHHHH
Q 012132 450 MAERIAVVLKEV 461 (470)
Q Consensus 450 ~~~~~~~~~~~~ 461 (470)
+++++.++|+++
T Consensus 366 ~~~~~~~~~~~l 377 (377)
T cd03798 366 VAERLLELYREV 377 (377)
T ss_pred HHHHHHHHHhhC
Confidence 999999998763
No 58
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=100.00 E-value=2.7e-34 Score=283.23 Aligned_cols=273 Identities=18% Similarity=0.273 Sum_probs=211.5
Q ss_pred hcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc---------chhhh---hcccccccceeeeehhhHH
Q 012132 148 ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---------FKLDY---VKHLPLVAGAMIDSHVTAE 215 (470)
Q Consensus 148 ~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~---------~~~~~---~~~~~~~~~~~~~s~~~~~ 215 (470)
..++||+|++.+....+. ++.... ..+.+.++|..+... +...+ ......++.+++.|....+
T Consensus 209 ~~~~di~i~dr~~~~~~~--~~~~~~---~~~~v~~lH~~h~~~~~~~~~~~~~~~~y~~~~~~~~~~D~iI~~S~~~~~ 283 (500)
T TIGR02918 209 LTKKDIIILDRSTGIGQA--VLENKG---PAKLGVVVHAEHFSESATNETYILWNNYYEYQFSNADYIDFFITATDIQNQ 283 (500)
T ss_pred CCCCCEEEEcCCcccchH--HHhcCC---CceEEEEEChhhhcCccCcchhHHHHHHHHHHHhchhhCCEEEECCHHHHH
Confidence 468999999875533322 111111 146777788533111 11111 1234456788888888777
Q ss_pred HHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHH
Q 012132 216 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYES 295 (470)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l 295 (470)
.+.+.+.. ++...+++.+||||++...+.+.. ..++.+|+++||+.+.||++.+++|+.++
T Consensus 284 ~l~~~~~~-~~~~~~ki~viP~g~~~~~~~~~~------------------~r~~~~il~vGrl~~~Kg~~~li~A~~~l 344 (500)
T TIGR02918 284 ILKNQFKK-YYNIEPRIYTIPVGSLDELQYPEQ------------------ERKPFSIITASRLAKEKHIDWLVKAVVKA 344 (500)
T ss_pred HHHHHhhh-hcCCCCcEEEEcCCCcccccCccc------------------ccCCeEEEEEeccccccCHHHHHHHHHHH
Confidence 76665432 334467899999998655432210 13457899999999999999999999988
Q ss_pred HHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHH
Q 012132 296 LELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRIT 375 (470)
Q Consensus 296 ~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~ 375 (470)
.+ +.|+++|+|+|+| +..+.++++++++++.++|.|+|+. ++.++|+.||++|+||. .||||+++
T Consensus 345 ~~-------~~p~~~l~i~G~G-----~~~~~l~~~i~~~~l~~~V~f~G~~-~~~~~~~~adv~v~pS~--~Egfgl~~ 409 (500)
T TIGR02918 345 KK-------SVPELTFDIYGEG-----GEKQKLQKIINENQAQDYIHLKGHR-NLSEVYKDYELYLSAST--SEGFGLTL 409 (500)
T ss_pred Hh-------hCCCeEEEEEECc-----hhHHHHHHHHHHcCCCCeEEEcCCC-CHHHHHHhCCEEEEcCc--cccccHHH
Confidence 65 4589999999999 5778999999999999999999975 79999999999999998 99999999
Q ss_pred HHHHhcCCCEEecCCC-CcceeeecCceeeeecCCC--C---C-hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChh
Q 012132 376 IEAMAFQLPVLGTAAG-GTTEIVVNGTTGLLHPVGK--E---G-ITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEH 448 (470)
Q Consensus 376 lEAma~G~PvI~s~~~-g~~e~v~~~~~G~l~~~~d--~---~-~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~ 448 (470)
+||||||+|||+++++ |.+|+|.+|.+|+++++++ . + +++|+++|.++++ ++.+.+|++++++.+ +.|||+
T Consensus 410 lEAma~G~PVI~~dv~~G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~-~~~~~~~~~~a~~~a-~~fs~~ 487 (500)
T TIGR02918 410 MEAVGSGLGMIGFDVNYGNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN-SNDIDAFHEYSYQIA-EGFLTA 487 (500)
T ss_pred HHHHHhCCCEEEecCCCCCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHH-HhcCHH
Confidence 9999999999999986 8999999999999998532 1 2 6789999999995 557899999999976 569999
Q ss_pred HHHHHHHHHHHHH
Q 012132 449 HMAERIAVVLKEV 461 (470)
Q Consensus 449 ~~~~~~~~~~~~~ 461 (470)
+++++|.++++++
T Consensus 488 ~v~~~w~~ll~~~ 500 (500)
T TIGR02918 488 NIIEKWKKLVREV 500 (500)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999998763
No 59
>PLN02501 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=4.3e-34 Score=277.40 Aligned_cols=334 Identities=12% Similarity=0.111 Sum_probs=231.7
Q ss_pred ccEEEEEeeccCC--CchhHHHHHHHHHHHhC-CceEEEEecCCCCCchhHHH--------------hhhhhh-hhcc--
Q 012132 74 SKLVLLVSHELSL--SGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIY--------------SLEHKM-WDRG-- 133 (470)
Q Consensus 74 ~~kIl~v~~~~~~--~G~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~--------------~~~~~~-~~~~-- 133 (470)
+++|.++++-.-| .|...--.--|-+|++. |++|+++.++-...+....+ .+...+ ...|
T Consensus 322 ~r~~~ivTtAslPWmTGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r~g~~ 401 (794)
T PLN02501 322 KRHVAIVTTASLPWMTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEERIGFK 401 (794)
T ss_pred CCeEEEEEcccCcccccccccHHHHHHHhcccCCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHhcCCC
Confidence 4789999987443 77654334446677777 79999998764432211111 111122 1112
Q ss_pred ----eeeEec------------CChhhHHhhcCCcEEEEcccchhhhH--HHHhhhcCCccccceeeEEeeeccccchhh
Q 012132 134 ----VQVISA------------KGQETINTALKADLIVLNTAVAGKWL--DAVLKEDVPRVLPNVLWWIHEMRGHYFKLD 195 (470)
Q Consensus 134 ----~~~~~~------------~~~~~~~~~~~~DiV~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 195 (470)
+.+++. ......+..++|||||+++|....|. ........ .+++..+|.....|....
T Consensus 402 ~~~~i~fYpg~~~~~~~SI~p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl----~PVVasyHTny~eYl~~y 477 (794)
T PLN02501 402 ADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKF----NHVVGVVHTNYLEYIKRE 477 (794)
T ss_pred CCceEEeecchhccCCccccchHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHc----CCeEEEEeCCcHHHHhHh
Confidence 222332 22345566789999999998866665 33233322 257788887665543311
Q ss_pred h----h--------ccccc--ccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHH
Q 012132 196 Y----V--------KHLPL--VAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVR 261 (470)
Q Consensus 196 ~----~--------~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r 261 (470)
. . .++.. .+.+++.|..+... +...+. ..||||.+.|.+.... ..+
T Consensus 478 ~~g~L~~~llk~l~~~v~r~hcD~VIaPS~atq~L-----------~~~vI~-nVnGVDte~F~P~~r~--------~~~ 537 (794)
T PLN02501 478 KNGALQAFFVKHINNWVTRAYCHKVLRLSAATQDL-----------PKSVIC-NVHGVNPKFLKIGEKV--------AEE 537 (794)
T ss_pred cchhHHHHHHHHHHHHHHHhhCCEEEcCCHHHHHh-----------ccccee-ecccccccccCCcchh--------HHH
Confidence 1 0 11121 35566666444321 111122 2269999999876431 222
Q ss_pred HHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcE
Q 012132 262 ESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV 341 (470)
Q Consensus 262 ~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V 341 (470)
+++|++.....++|+||+.+.||++.+++|++.+.+ +.++++|+|+|+| |.++++++++.++++ +|
T Consensus 538 r~lgi~~~~kgiLfVGRLa~EKGld~LLeAla~L~~-------~~pnvrLvIVGDG-----P~reeLe~la~eLgL--~V 603 (794)
T PLN02501 538 RELGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKN-------ELDGFNLDVFGNG-----EDAHEVQRAAKRLDL--NL 603 (794)
T ss_pred HhcCCccccCceEEEEcccccCCHHHHHHHHHHHHh-------hCCCeEEEEEcCC-----ccHHHHHHHHHHcCC--EE
Confidence 556765555568899999999999999999998754 3478999999999 688999999999887 49
Q ss_pred EEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHH
Q 012132 342 HFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIV 421 (470)
Q Consensus 342 ~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~ 421 (470)
.|+|..++...+|+.+|+||+||. .|+||++++||||||+|||+++.+|.. ++.++.+|+++ +| +++++++|.
T Consensus 604 ~FLG~~dd~~~lyasaDVFVlPS~--sEgFGlVlLEAMA~GlPVVATd~pG~e-~V~~g~nGll~--~D--~EafAeAI~ 676 (794)
T PLN02501 604 NFLKGRDHADDSLHGYKVFINPSI--SDVLCTATAEALAMGKFVVCADHPSNE-FFRSFPNCLTY--KT--SEDFVAKVK 676 (794)
T ss_pred EecCCCCCHHHHHHhCCEEEECCC--cccchHHHHHHHHcCCCEEEecCCCCc-eEeecCCeEec--CC--HHHHHHHHH
Confidence 999999888899999999999999 999999999999999999999999854 46677788865 55 999999999
Q ss_pred HHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Q 012132 422 KLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 422 ~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 458 (470)
++++++..+..+.+ ...|||+.+++++++.-
T Consensus 677 ~LLsd~~~rl~~~a------~~~~SWeAaadrLle~~ 707 (794)
T PLN02501 677 EALANEPQPLTPEQ------RYNLSWEAATQRFMEYS 707 (794)
T ss_pred HHHhCchhhhHHHH------HhhCCHHHHHHHHHHhh
Confidence 99998765433322 23699999999998754
No 60
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=100.00 E-value=1.2e-33 Score=275.58 Aligned_cols=340 Identities=19% Similarity=0.165 Sum_probs=246.7
Q ss_pred EEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHH-------------------------------hh
Q 012132 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY-------------------------------SL 125 (470)
Q Consensus 77 Il~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~-------------------------------~~ 125 (470)
+++++..+|.+-+|.++.+-++.|.+.+.+|+++............. ..
T Consensus 2 ~~l~t~~~p~~~~~~f~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 81 (407)
T cd04946 2 LILLTNTFPGAKGESFIEPEIKYLSKSFDKIIILPTNVGKEREKVRPNGVSNIIISNYRQDKSRAKLIFLALSVFSLPFY 81 (407)
T ss_pred EEEEecCCCCCCcccccHHHHHHHHhcCCEEEEEecccccccccCCCccccceEEeecccchhhHHHHHHHHHhhhHHHH
Confidence 56788888866678999999999999999999987432221100000 00
Q ss_pred hhhhhhcceeeEecCCh----h-------------h----HHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEE
Q 012132 126 EHKMWDRGVQVISAKGQ----E-------------T----INTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWI 184 (470)
Q Consensus 126 ~~~~~~~~~~~~~~~~~----~-------------~----~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (470)
.......+......... + . .....++|++|++...........+..... .++++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~sy~~~~~~~~~~~l~~~~~--~~~~i~~~ 159 (407)
T cd04946 82 KELLKKLKRRRKNIKYFLLLLYFIKRSILLKLKYLHLLIYNSIDGQGTVFYSYWLHETAYALALLKKEYL--RKRVISRA 159 (407)
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCceEEEEecCchHHHHHHHHHHhcC--CceEEEEe
Confidence 00001111100000000 0 0 001245677777653333322332332221 13588889
Q ss_pred eeeccc--cch----hhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHH
Q 012132 185 HEMRGH--YFK----LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLRE 258 (470)
Q Consensus 185 h~~~~~--~~~----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~ 258 (470)
|+.... ... ......+...+.++++|....+++.+ .++....++.+++||++.+.+.+..
T Consensus 160 Hg~d~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~l~~----~~~~~~~ki~vi~~gv~~~~~~~~~---------- 225 (407)
T cd04946 160 HGYDLYEDRYPSGYIPLRRYLLSSLDAVFPCSEQGRNYLQK----RYPAYKEKIKVSYLGVSDPGIISKP---------- 225 (407)
T ss_pred ccchhhhhhccccchHHHHHHHhcCCEEEECCHHHHHHHHH----HCCCccccEEEEECCcccccccCCC----------
Confidence 964311 111 11222346778888888888776654 6677788899999999887653321
Q ss_pred HHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCC--ceEEEEEeCCCCcChHHHHHHHHHHHhcC
Q 012132 259 HVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP--SVHAVIIGSDMNAQTKFESELRNYVMQKK 336 (470)
Q Consensus 259 ~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~--~~~l~ivG~g~~~~~~~~~~l~~~~~~~~ 336 (470)
..++.+.++++||+.+.||++.+++|+.++.+ +.| +++++++|+| +..+.+++++++++
T Consensus 226 -------~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~-------~~p~~~l~~~iiG~g-----~~~~~l~~~~~~~~ 286 (407)
T cd04946 226 -------SKDDTLRIVSCSYLVPVKRVDLIIKALAALAK-------ARPSIKIKWTHIGGG-----PLEDTLKELAESKP 286 (407)
T ss_pred -------CCCCCEEEEEeeccccccCHHHHHHHHHHHHH-------hCCCceEEEEEEeCc-----hHHHHHHHHHHhcC
Confidence 12567889999999999999999999999866 233 5778899998 67888999998888
Q ss_pred CCCcEEEeccc--CCHHHHHHh--cCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCC-CC
Q 012132 337 IQDRVHFVNKT--LTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVG-KE 411 (470)
Q Consensus 337 l~~~V~~~g~~--~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~-d~ 411 (470)
..++|+|+|++ +++.++|+. +|++++||. .||+|++++|||++|+|||+|++||.+|++.++++|+++++. |
T Consensus 287 ~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~--~Eg~p~~llEAma~G~PVIas~vgg~~e~i~~~~~G~l~~~~~~- 363 (407)
T cd04946 287 ENISVNFTGELSNSEVYKLYKENPVDVFVNLSE--SEGLPVSIMEAMSFGIPVIATNVGGTPEIVDNGGNGLLLSKDPT- 363 (407)
T ss_pred CCceEEEecCCChHHHHHHHhhcCCCEEEeCCc--cccccHHHHHHHHcCCCEEeCCCCCcHHHhcCCCcEEEeCCCCC-
Confidence 88899999987 578899975 789999999 999999999999999999999999999999999999999875 5
Q ss_pred ChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Q 012132 412 GITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 455 (470)
Q Consensus 412 ~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 455 (470)
+++++++|.++++|++.+++|+++|++++.++|+|+...+++.
T Consensus 364 -~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 364 -PNELVSSLSKFIDNEEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred -HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 8999999999999999999999999999999999999998875
No 61
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=7.8e-33 Score=260.92 Aligned_cols=328 Identities=30% Similarity=0.311 Sum_probs=246.1
Q ss_pred hhhhcceeeEecCChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhh-h----------
Q 012132 128 KMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLD-Y---------- 196 (470)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~-~---------- 196 (470)
.....+..+++...........+.|.|+.....+..++...+.. |...+++.|++|.....+.++. .
T Consensus 123 ~~~~~~~~il~~~~~~~~k~~~~~d~~i~d~~~~~~~l~~~~~~--p~~~~~i~~~~h~~~~lla~r~g~~~~l~~~~l~ 200 (495)
T KOG0853|consen 123 VAGCAYLRILRIPFGILFKWAEKVDPIIEDFVSACVPLLKQLSG--PDVIIKIYFYCHFPDSLLAKRLGVLKVLYRHALD 200 (495)
T ss_pred hhccceeEEEEeccchhhhhhhhhceeecchHHHHHHHHHHhcC--CcccceeEEeccchHHHhccccCccceeehhhhh
Confidence 33445556666555333333478899999887777777666655 7788899999998766554432 1
Q ss_pred ---hcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEE
Q 012132 197 ---VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLF 273 (470)
Q Consensus 197 ---~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i 273 (470)
.......+..++++..++..+...+. .+...++.+.+.++|.+.+.+... ....+.+...|.+.+....+..+
T Consensus 201 ~~e~e~~~~~~~~~~ns~~~~~~f~~~~~---~L~~~d~~~~y~ei~~s~~~~~~~-~~~~~~~~~~r~~~~v~~~d~~~ 276 (495)
T KOG0853|consen 201 KIEEETTGLAWKILVNSYFTKRQFKATFV---SLSNSDITSTYPEIDGSWFTYGQY-ESHLELRLPVRLYRGVSGIDRFF 276 (495)
T ss_pred hhhhhhhhccceEecchhhhhhhhhhhhh---hcCCCCcceeeccccchhcccccc-ccchhcccccceeeeecccceEe
Confidence 11123445667777777777766544 234455899999999888775211 11122345556667777767888
Q ss_pred EEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCC-----CCcChHHHHHHHHHHHhcCC-CCcEEEeccc
Q 012132 274 AIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSD-----MNAQTKFESELRNYVMQKKI-QDRVHFVNKT 347 (470)
Q Consensus 274 ~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g-----~~~~~~~~~~l~~~~~~~~l-~~~V~~~g~~ 347 (470)
..+.++.+.||++++++++..+...+.+. ..++.+++++|+. ..+...+..++.++++++++ ++.|.|+...
T Consensus 277 ~siN~~~pgkd~~l~l~a~~~~~~~i~~~--~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~ 354 (495)
T KOG0853|consen 277 PSINRFEPGKDQDLALPAFTLLHDSIPEP--SISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPST 354 (495)
T ss_pred eeeeecCCCCCceeehhhHHhhhcccCCC--CCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCC
Confidence 89999999999999999999887766542 4478899999943 22333588999999999998 5778888877
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCH
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 427 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 427 (470)
.+...|..++|..+.-+....|+||++++|||+||+|||+++.||..|+|.++.+|++++++++....+++++.++..|+
T Consensus 355 ~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p 434 (495)
T KOG0853|consen 355 TRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLLIDPGQEAVAELADALLKLRRDP 434 (495)
T ss_pred chHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEEEcCCcceeeCCchHHHHHHHHHHHHHhcCH
Confidence 66666766666544333322699999999999999999999999999999999999999996422337999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH
Q 012132 428 ERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 463 (470)
Q Consensus 428 ~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~ 463 (470)
+.+.+|+++++++++++|||.++.+++.++..+...
T Consensus 435 ~l~~~~~~~G~~rV~e~fs~~~~~~ri~~~~~~~~~ 470 (495)
T KOG0853|consen 435 ELWARMGKNGLKRVKEMFSWQHYSERIASVLGKYLQ 470 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHhcCC
Confidence 999999999999999999999999999998886653
No 62
>PHA01630 putative group 1 glycosyl transferase
Probab=100.00 E-value=3.7e-32 Score=255.12 Aligned_cols=296 Identities=17% Similarity=0.156 Sum_probs=207.8
Q ss_pred hHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCcEEEEcccchhhhHHHHh
Q 012132 90 PLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAVL 169 (470)
Q Consensus 90 ~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~ 169 (470)
.++-.-+-+.|...|++|+++-...-. +..+.. +++..+.|+..... ..
T Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~~~~~--------------------------~~~~~~-~~~~~~~~~~~~~~----~~ 61 (331)
T PHA01630 13 VRQKKLLEEHLKMLGHKVTVFEKPTLT--------------------------KYQLPP-GYPIYIYYTIFNSM----LF 61 (331)
T ss_pred HHHHHHHHHHHHHhCCeeEEEeccchh--------------------------hhhcCC-CCceeeehhhhhHH----HH
Confidence 356667788899999999988532211 001111 33444455433222 22
Q ss_pred hhcCCccccceeeEEeeeccccchhhhhcc--cccccceeeeehhhHHHHHHhhhhhhccC-CCceEEEecCCchhhhhH
Q 012132 170 KEDVPRVLPNVLWWIHEMRGHYFKLDYVKH--LPLVAGAMIDSHVTAEYWKNRTRERLRIK-MPDTYVVHLGNSKELMEV 246 (470)
Q Consensus 170 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~i~vi~ngvd~~~~~~ 246 (470)
...+++..+++++++|+.. .....+... ....+.+++.|....+.+.+ .+++ .+++.+||||+|.+.|.+
T Consensus 62 ~~~~~~~~~~~v~e~~~~~--~l~~~~~~~~~~~~ad~ii~~S~~~~~~l~~-----~g~~~~~~i~vIpNGVd~~~f~~ 134 (331)
T PHA01630 62 WKGIPHVGKNIVFEVADTD--AISHTALYFFRNQPVDEIVVPSQWSKNAFYT-----SGLKIPQPIYVIPHNLNPRMFEY 134 (331)
T ss_pred HhhccccCCceEEEEEeec--hhhHHHHHHHhhccCCEEEECCHHHHHHHHH-----cCCCCCCCEEEECCCCCHHHcCC
Confidence 2334555568888888732 233333333 35688899999988877653 3443 467999999999988764
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHH
Q 012132 247 AEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFES 326 (470)
Q Consensus 247 ~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~ 326 (470)
.... ..++++++++|++.++||++.+++|++++.+ +.++++++++|++. ...
T Consensus 135 ~~~~----------------~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~-------~~~~~~llivG~~~-----~~~ 186 (331)
T PHA01630 135 KPKE----------------KPHPCVLAILPHSWDRKGGDIVVKIFHELQN-------EGYDFYFLIKSSNM-----LDP 186 (331)
T ss_pred Cccc----------------cCCCEEEEEeccccccCCHHHHHHHHHHHHh-------hCCCEEEEEEeCcc-----cch
Confidence 3211 1345777788899999999999999998865 34789999999762 222
Q ss_pred HHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeee
Q 012132 327 ELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLH 406 (470)
Q Consensus 327 ~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~ 406 (470)
.+ .++.+ +......+++..+|+.||++++||. .|+||++++||||||+|||+|+.||.+|++.++.+|+++
T Consensus 187 ~l------~~~~~-~~~~v~~~~l~~~y~~aDv~v~pS~--~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv 257 (331)
T PHA01630 187 RL------FGLNG-VKTPLPDDDIYSLFAGCDILFYPVR--GGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWI 257 (331)
T ss_pred hh------ccccc-eeccCCHHHHHHHHHhCCEEEECCc--cccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEe
Confidence 21 12222 1111224899999999999999999 899999999999999999999999999999999888887
Q ss_pred cCC-----------------CCChHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Q 012132 407 PVG-----------------KEGITPLAKNIVKLATHV--ERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 460 (470)
Q Consensus 407 ~~~-----------------d~~~~~la~~i~~ll~~~--~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 460 (470)
+.+ +.|.+++++++.+++.|+ +.+.++..++.+.+.++|||++++++++++|++
T Consensus 258 ~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 258 KSGRKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred eecccccccccCCcccccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 643 112788999999998873 444555555555667889999999999999975
No 63
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=100.00 E-value=2.4e-32 Score=262.85 Aligned_cols=312 Identities=20% Similarity=0.207 Sum_probs=211.4
Q ss_pred EEEEEeeccC-CCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhH---------HHhhhhhhhhcceeeEe-cCChhh
Q 012132 76 LVLLVSHELS-LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEV---------IYSLEHKMWDRGVQVIS-AKGQET 144 (470)
Q Consensus 76 kIl~v~~~~~-~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~ 144 (470)
||++++.++. .||+|+++.+|++.|.+. +|..+........... ...+........ .+.+ ......
T Consensus 1 ~i~~~~~~~~~~GG~E~~~~~l~~~l~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 77 (351)
T cd03804 1 KVAIVHDWLVNIGGGEKVVEALARLFPDA--DIFTLVDDPDKLPRLLRLKKIRTSFIQKLPFARRRYR-KYLPLMPLAIE 77 (351)
T ss_pred CEEEEEeccccCCCHHHHHHHHHHhCCCC--CEEEEeecCCccchhhcCCceeechhhhchhhHhhHh-hhCchhhHHHH
Confidence 6899998876 588899999999998753 3322222211111000 000000000000 0000 001112
Q ss_pred HHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecc-------ccc------------------hhhhhcc
Q 012132 145 INTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG-------HYF------------------KLDYVKH 199 (470)
Q Consensus 145 ~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~-------~~~------------------~~~~~~~ 199 (470)
.....++|+|++++......+. .....+.++++|.... .+. .....+.
T Consensus 78 ~~~~~~~D~v~~~~~~~~~~~~-------~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (351)
T cd03804 78 QFDLSGYDLVISSSHAVAKGVI-------TRPDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRIWDRRS 150 (351)
T ss_pred hccccCCCEEEEcCcHHhcccc-------CCCCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHHHHHHHHHHH
Confidence 2345689999988654333221 0112456666774211 000 0011223
Q ss_pred cccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeec
Q 012132 200 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV 279 (470)
Q Consensus 200 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl 279 (470)
+...+.+++.|....+.+.+ .++ .+..+|+||+|.+.|.+.. .....++++||+
T Consensus 151 ~~~~d~ii~~S~~~~~~~~~----~~~---~~~~vi~~~~d~~~~~~~~-------------------~~~~~il~~G~~ 204 (351)
T cd03804 151 AARVDYFIANSRFVARRIKK----YYG---RDATVIYPPVDTDRFTPAE-------------------EKEDYYLSVGRL 204 (351)
T ss_pred hcCCCEEEECCHHHHHHHHH----HhC---CCcEEECCCCCHhhcCcCC-------------------CCCCEEEEEEcC
Confidence 46778888888888777654 333 2468999999988775432 233458899999
Q ss_pred ccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhc
Q 012132 280 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAI 357 (470)
Q Consensus 280 ~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~a 357 (470)
.+.||++.+++|++++ + ++|+|+|+| +..+++++ +..++|+|+|++ +++.++|+.|
T Consensus 205 ~~~K~~~~li~a~~~~-----------~-~~l~ivG~g-----~~~~~l~~-----~~~~~V~~~g~~~~~~~~~~~~~a 262 (351)
T cd03804 205 VPYKRIDLAIEAFNKL-----------G-KRLVVIGDG-----PELDRLRA-----KAGPNVTFLGRVSDEELRDLYARA 262 (351)
T ss_pred ccccChHHHHHHHHHC-----------C-CcEEEEECC-----hhHHHHHh-----hcCCCEEEecCCCHHHHHHHHHhC
Confidence 9999999999999865 5 899999998 45555555 446799999987 5599999999
Q ss_pred CEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHH
Q 012132 358 DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRG 437 (470)
Q Consensus 358 Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a 437 (470)
|++++||. |+||++++|||+||+|||+++.||..|++.++.+|++++++| +++++++|.++++|++ .+.+++
T Consensus 263 d~~v~ps~---e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~~~~G~~~~~~~--~~~la~~i~~l~~~~~---~~~~~~ 334 (351)
T cd03804 263 RAFLFPAE---EDFGIVPVEAMASGTPVIAYGKGGALETVIDGVTGILFEEQT--VESLAAAVERFEKNED---FDPQAI 334 (351)
T ss_pred CEEEECCc---CCCCchHHHHHHcCCCEEEeCCCCCcceeeCCCCEEEeCCCC--HHHHHHHHHHHHhCcc---cCHHHH
Confidence 99999994 999999999999999999999999999999999999999988 9999999999999874 223344
Q ss_pred HHHHHHHcChhHHHHHH
Q 012132 438 YERVKEIFQEHHMAERI 454 (470)
Q Consensus 438 ~~~~~~~fs~~~~~~~~ 454 (470)
++.+ +.|+|+++.+++
T Consensus 335 ~~~~-~~~~~~~~~~~~ 350 (351)
T cd03804 335 RAHA-ERFSESRFREKI 350 (351)
T ss_pred HHHH-HhcCHHHHHHHh
Confidence 4444 349999988765
No 64
>PHA01633 putative glycosyl transferase group 1
Probab=100.00 E-value=2.2e-31 Score=246.43 Aligned_cols=307 Identities=18% Similarity=0.169 Sum_probs=210.3
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCcEE
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLI 154 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV 154 (470)
||-++++..++ ....+..+++..|++.|--|++++..-.-+.. +.-+.+++
T Consensus 1 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~---------------- 51 (335)
T PHA01633 1 MKTAILTMNYS--SISNVSEDIAEVLRENGEIVTITKNPFYIPKA-----------EKLIVFIP---------------- 51 (335)
T ss_pred CceEEEEechh--hhhhHHHHHHHHHHhCCcEEEEecCCcccCcc-----------ceEEEEee----------------
Confidence 45566665442 33478899999999999888888732111000 00011111
Q ss_pred EEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEE
Q 012132 155 VLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYV 234 (470)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~v 234 (470)
.|-+....++...... . ...+++.++|+... ...+.+.+.+-..++++|..+.+.+.+ .|++.. .+
T Consensus 52 -~~~~~~~~~~~~~~~~--~-~~~~~~tt~~g~~~---~~~y~~~m~~~~~vIavS~~t~~~L~~-----~G~~~~--i~ 117 (335)
T PHA01633 52 -FHPPSLNPYLYAYYQF--K-GKKYFYTTCDGIPN---IEIVNKYLLQDVKFIPNSKFSAENLQE-----VGLQVD--LP 117 (335)
T ss_pred -cCCcccchHHhhhhhh--c-CCCceEEeeCCcCc---hHHHHHHHhcCCEEEeCCHHHHHHHHH-----hCCCCc--ee
Confidence 1222222222221111 1 11467788887653 134444455556788888888776653 355544 35
Q ss_pred EecCCchhhhhHhhhHHHHHHHHHHHHHHcCCC-CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCC----ce
Q 012132 235 VHLGNSKELMEVAEDNVAKRVLREHVRESLGVR-NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP----SV 309 (470)
Q Consensus 235 i~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~----~~ 309 (470)
|+||+|.+.|.+.... ..++|++++.. ++.++++++||+.++||++.+++|++++.+ +.| ++
T Consensus 118 I~~GVD~~~f~p~~~~------~~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~-------~~p~~~~~i 184 (335)
T PHA01633 118 VFHGINFKIVENAEKL------VPQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNT-------KYPDIAKKI 184 (335)
T ss_pred eeCCCChhhcCccchh------hHHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHH-------hCCCccccE
Confidence 7899999988764321 23466666653 467889999999999999999999998865 234 46
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEec---c--cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCC
Q 012132 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN---K--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (470)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g---~--~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (470)
+++++|.+ ..++++++++|+|+| + .+++.++|++||++|+||. .|+||++++|||+||+|
T Consensus 185 ~l~ivG~~-------------~~~~l~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~--~EgfGlvlLEAMA~G~P 249 (335)
T PHA01633 185 HFFVISHK-------------QFTQLEVPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSG--TEGFGMPVLESMAMGTP 249 (335)
T ss_pred EEEEEcHH-------------HHHHcCCCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCc--cccCCHHHHHHHHcCCC
Confidence 88887742 124567888999995 3 3679999999999999999 99999999999999999
Q ss_pred EEecCCCCcceeeec------------------CceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcC
Q 012132 385 VLGTAAGGTTEIVVN------------------GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQ 446 (470)
Q Consensus 385 vI~s~~~g~~e~v~~------------------~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs 446 (470)
||+++.|+++|++.+ ...|+.++..| +++++++|.++++..+ +...+.++++.+++ |+
T Consensus 250 VVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~d--~~~la~ai~~~~~~~~-~~~~~~~~~~~a~~-f~ 325 (335)
T PHA01633 250 VIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKFQ--IEDMANAIILAFELQD-REERSMKLKELAKK-YD 325 (335)
T ss_pred EEEccCCCceeecCCccceeeCCCCHHHhcCcccCceeeecCCC--HHHHHHHHHHHHhccC-hhhhhHHHHHHHHh-cC
Confidence 999999999997542 23466777777 9999999999965422 23336677777644 99
Q ss_pred hhHHHHHHHH
Q 012132 447 EHHMAERIAV 456 (470)
Q Consensus 447 ~~~~~~~~~~ 456 (470)
|++++++|++
T Consensus 326 ~~~~~~~~~~ 335 (335)
T PHA01633 326 IRNLYTRFLE 335 (335)
T ss_pred HHHHHHHhhC
Confidence 9999999863
No 65
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=100.00 E-value=7.7e-32 Score=261.51 Aligned_cols=263 Identities=20% Similarity=0.285 Sum_probs=209.0
Q ss_pred cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc--------h---hhhhcccccccceeeeehhhHHHH
Q 012132 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF--------K---LDYVKHLPLVAGAMIDSHVTAEYW 217 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~--------~---~~~~~~~~~~~~~~~~s~~~~~~~ 217 (470)
.++|+++++.+....+...... .+ .+.+.++|+.+.... . ......+...+.+++.|....+.+
T Consensus 98 ~~~diii~~~~~~~~~~~~~~~--~~---~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~l 172 (372)
T cd04949 98 TKPDVFILDRPTLDGQALLNMK--KA---AKVVVVLHSNHVSDNNDPVHSLINNFYEYVFENLDKVDGVIVATEQQKQDL 172 (372)
T ss_pred CCCCEEEECCccccchhHHhcc--CC---ceEEEEEChHHhCCcccccccccchhhHHHHhChhhCCEEEEccHHHHHHH
Confidence 6899999998765554111111 11 245667775432111 1 111223456677777777776665
Q ss_pred HHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHH
Q 012132 218 KNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLE 297 (470)
Q Consensus 218 ~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~ 297 (470)
.+ .++.. .++.+||||++...+.+... ....+..++++||+.+.||++.+++|+.++.+
T Consensus 173 ~~----~~~~~-~~v~~ip~g~~~~~~~~~~~----------------~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~ 231 (372)
T cd04949 173 QK----QFGNY-NPIYTIPVGSIDPLKLPAQF----------------KQRKPHKIITVARLAPEKQLDQLIKAFAKVVK 231 (372)
T ss_pred HH----HhCCC-CceEEEcccccChhhcccch----------------hhcCCCeEEEEEccCcccCHHHHHHHHHHHHH
Confidence 54 44432 34899999999887654310 11355778999999999999999999998865
Q ss_pred HHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHH
Q 012132 298 LIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIE 377 (470)
Q Consensus 298 ~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lE 377 (470)
+.|+++|+|+|.| +....+++.++++++.++|.|.|+.+++.++|+.||++|+||. .|+||++++|
T Consensus 232 -------~~~~~~l~i~G~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~S~--~Eg~~~~~lE 297 (372)
T cd04949 232 -------QVPDATLDIYGYG-----DEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSLLTSQ--SEGFGLSLME 297 (372)
T ss_pred -------hCCCcEEEEEEeC-----chHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEEeccc--ccccChHHHH
Confidence 4589999999998 4667788888999999999999998999999999999999999 8999999999
Q ss_pred HHhcCCCEEecCCC-CcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHH
Q 012132 378 AMAFQLPVLGTAAG-GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 454 (470)
Q Consensus 378 Ama~G~PvI~s~~~-g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 454 (470)
||++|+|||+++.+ |..+++.++.+|++++++| +++++++|..+++|++.++++++++++.. ++|||++++++|
T Consensus 298 Ama~G~PvI~~~~~~g~~~~v~~~~~G~lv~~~d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~w 372 (372)
T cd04949 298 ALSHGLPVISYDVNYGPSEIIEDGENGYLVPKGD--IEALAEAIIELLNDPKLLQKFSEAAYENA-ERYSEENVWEKW 372 (372)
T ss_pred HHhCCCCEEEecCCCCcHHHcccCCCceEeCCCc--HHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHhhHHHHHhcC
Confidence 99999999999987 8999999999999999998 99999999999999999999999999985 679999998764
No 66
>PLN02275 transferase, transferring glycosyl groups
Probab=99.98 E-value=1.1e-30 Score=251.79 Aligned_cols=308 Identities=12% Similarity=0.059 Sum_probs=210.4
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCc-eEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC---Ch-------h
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGT-KVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK---GQ-------E 143 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~-~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------~ 143 (470)
.++.+++- +-.|++..+..++..|.++|+ +|++++....... .+.....++.++..+ .. .
T Consensus 5 ~~~~~~~~--~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~-------~~~~~~~~v~v~r~~~~~~~~~~~~~~~ 75 (371)
T PLN02275 5 GRAAVVVL--GDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPI-------PALLNHPSIHIHLMVQPRLLQRLPRVLY 75 (371)
T ss_pred cEEEEEEe--cCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCC-------HHHhcCCcEEEEECCCcccccccccchH
Confidence 34555542 446778899999999999875 8999985443221 222223345554442 00 0
Q ss_pred ------h------------HHhhcCCcEEEEcccchhh--hHHHHhhhcCCccccceeeEEeeeccccc-----------
Q 012132 144 ------T------------INTALKADLIVLNTAVAGK--WLDAVLKEDVPRVLPNVLWWIHEMRGHYF----------- 192 (470)
Q Consensus 144 ------~------------~~~~~~~DiV~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~~~~~----------- 192 (470)
. ..+..+||+||+|++.... +......... ..|++.++|+......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~---~~p~v~~~h~~~~~~~~~~~~~~~~~~ 152 (371)
T PLN02275 76 ALALLLKVAIQFLMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLACWLR---RAKFVIDWHNFGYTLLALSLGRSHPLV 152 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHh---CCCEEEEcCCccHHHHhcccCCCCHHH
Confidence 0 1245799999998755322 1222222111 2477788887531110
Q ss_pred ---hhhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCC
Q 012132 193 ---KLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNE 269 (470)
Q Consensus 193 ---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 269 (470)
.......++..+.+++.|....+.+.+ .++++ +.+||||. .+.|.+.... ..+. +++
T Consensus 153 ~~~~~~e~~~~~~ad~ii~~S~~~~~~l~~----~~g~~---i~vi~n~~-~~~f~~~~~~-----------~~~~-~~~ 212 (371)
T PLN02275 153 RLYRWYERHYGKMADGHLCVTKAMQHELDQ----NWGIR---ATVLYDQP-PEFFRPASLE-----------IRLR-PNR 212 (371)
T ss_pred HHHHHHHHHHHhhCCEEEECCHHHHHHHHH----hcCCC---eEEECCCC-HHHcCcCCch-----------hccc-CCC
Confidence 011122345678888888888776643 44543 88999995 4555443211 0111 134
Q ss_pred CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhc----------ccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCC
Q 012132 270 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKK----------LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD 339 (470)
Q Consensus 270 ~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~----------~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~ 339 (470)
..+++++||+.+.||++.+++|+..+...+...+ ..+|+++|+|+|+| +..++++++++++++++
T Consensus 213 ~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G-----~~~~~l~~~~~~~~l~~ 287 (371)
T PLN02275 213 PALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKG-----PQKAMYEEKISRLNLRH 287 (371)
T ss_pred cEEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCC-----CCHHHHHHHHHHcCCCc
Confidence 4677889999999999999999987743221100 02488999999999 57899999999999976
Q ss_pred cEEEec-c--cCCHHHHHHhcCEEEEccCC-cccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHH
Q 012132 340 RVHFVN-K--TLTVAPYLAAIDVLVQNSQA-WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITP 415 (470)
Q Consensus 340 ~V~~~g-~--~~~~~~~~~~aDv~v~pS~~-~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~ 415 (470)
+.|.+ + .+++..+|++||++|+|+.. +.|++|++++||||||+|||+++.||.+|++.++.+|++++ | +++
T Consensus 288 -v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~eiv~~g~~G~lv~--~--~~~ 362 (371)
T PLN02275 288 -VAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIGELVKDGKNGLLFS--S--SSE 362 (371)
T ss_pred -eEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChHHHccCCCCeEEEC--C--HHH
Confidence 77765 4 48999999999999986421 25899999999999999999999999999999999999997 5 899
Q ss_pred HHHHHHHHH
Q 012132 416 LAKNIVKLA 424 (470)
Q Consensus 416 la~~i~~ll 424 (470)
|+++|.+++
T Consensus 363 la~~i~~l~ 371 (371)
T PLN02275 363 LADQLLELL 371 (371)
T ss_pred HHHHHHHhC
Confidence 999998874
No 67
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=5.3e-29 Score=239.29 Aligned_cols=372 Identities=18% Similarity=0.137 Sum_probs=263.9
Q ss_pred cEEEEEeeccCC----CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhh------------------h-h
Q 012132 75 KLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKM------------------W-D 131 (470)
Q Consensus 75 ~kIl~v~~~~~~----~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~------------------~-~ 131 (470)
|||++++.+..| ||-.-++..|.++|+++|++|.|+.+..+.........+.... . .
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYGKD 80 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhhhhccccceeeEeeeeecccceEEEEEeeccc
Confidence 789999988654 6668999999999999999999999766532211111000000 0 0
Q ss_pred cceeeEecC------C------------hh---------hHH-hh---cCCcEEEEcccchhhhHHHHhhhcCCccccce
Q 012132 132 RGVQVISAK------G------------QE---------TIN-TA---LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNV 180 (470)
Q Consensus 132 ~~~~~~~~~------~------------~~---------~~~-~~---~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (470)
.++.++-.. + .+ ... .- ..|||||+|+..+++....+..........+.
T Consensus 81 ~~v~~~lid~~~~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~L~~~~lk~~~~~~~~i~t 160 (487)
T COG0297 81 GGVDLYLIDNPALFKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTGLLPAYLKQRYRSGYIIPT 160 (487)
T ss_pred CCCcEEEecChhhcCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHHHHHHHHhhcccccccCCe
Confidence 001111110 0 00 001 11 37999999997766544433332211234689
Q ss_pred eeEEeeeccccc-h-------------------------hhhhcccccccceeeeehhhHHHHHHhh-----hhhhccCC
Q 012132 181 LWWIHEMRGHYF-K-------------------------LDYVKHLPLVAGAMIDSHVTAEYWKNRT-----RERLRIKM 229 (470)
Q Consensus 181 ~~~~h~~~~~~~-~-------------------------~~~~~~~~~~~~~~~~s~~~~~~~~~~~-----~~~~~~~~ 229 (470)
++|+|+...... . ...+..+..++.+.++|.+.+....... ...+....
T Consensus 161 VfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~~l~~~~~~~~lK~gi~~ad~vttVSptYa~Ei~t~~~g~gl~g~l~~~~ 240 (487)
T COG0297 161 VFTIHNLAYQGLFRLQYLEELGLPFEAYASFGLEFYGQISFLKGGLYYADAVTTVSPTYAGEIYTPEYGEGLEGLLSWRS 240 (487)
T ss_pred EEEEeeceeecccchhhHHHhcCCHHHhhhceeeecCcchhhhhhheeccEEEEECHHHHHhhccccccccchhhhhhcc
Confidence 999997532110 0 0011223456677777877765554110 01111233
Q ss_pred CceEEEecCCchhhhhHhhhHH-----------HHHHHHHHHHHHcCCCC--CCeEEEEEeecccCCCHHHHHHHHHHHH
Q 012132 230 PDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQDLFLHSFYESL 296 (470)
Q Consensus 230 ~~i~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~--~~~~i~~vGrl~~~Kg~~~ll~a~~~l~ 296 (470)
.++.-|.||+|.+...|..+.. .+.+.+..+++++|++. +.+++.++||+..+||+|.+++++..+.
T Consensus 241 ~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l 320 (487)
T COG0297 241 GKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELL 320 (487)
T ss_pred ccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCCCCCCcEEEEeeccccccchhHHHHHHHHHH
Confidence 6789999999999988876541 25566788999999984 4599999999999999999999999987
Q ss_pred HHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCH-HHHHHhcCEEEEccCCcccccchHH
Q 012132 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTV-APYLAAIDVLVQNSQAWGECFGRIT 375 (470)
Q Consensus 297 ~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~-~~~~~~aDv~v~pS~~~~E~~g~~~ 375 (470)
+ ...++++.|.|. +.+++.+..+++++.. ......|+.+.+ ..+|+.+|++++||+ .|+||++-
T Consensus 321 ~---------~~~~~vilG~gd---~~le~~~~~la~~~~~-~~~~~i~~~~~la~~i~agaD~~lmPSr--fEPcGL~q 385 (487)
T COG0297 321 E---------QGWQLVLLGTGD---PELEEALRALASRHPG-RVLVVIGYDEPLAHLIYAGADVILMPSR--FEPCGLTQ 385 (487)
T ss_pred H---------hCceEEEEecCc---HHHHHHHHHHHHhcCc-eEEEEeeecHHHHHHHHhcCCEEEeCCc--CcCCcHHH
Confidence 6 458999999983 3589999999998754 233445565544 556899999999999 99999999
Q ss_pred HHHHhcCCCEEecCCCCcceeeec--------CceeeeecCCCCChHHHHHHHHHHHh---CHHH-HHHHHHHHHHHHHH
Q 012132 376 IEAMAFQLPVLGTAAGGTTEIVVN--------GTTGLLHPVGKEGITPLAKNIVKLAT---HVER-RLTMGKRGYERVKE 443 (470)
Q Consensus 376 lEAma~G~PvI~s~~~g~~e~v~~--------~~~G~l~~~~d~~~~~la~~i~~ll~---~~~~-~~~~~~~a~~~~~~ 443 (470)
++||.+|+++|+..+||..+.|.+ ..+|+++.+.+ +++++.+|.+.+. +++. ++.+..++.. .
T Consensus 386 l~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~--~~~l~~al~rA~~~y~~~~~~w~~~~~~~m~---~ 460 (487)
T COG0297 386 LYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTN--PDHLANALRRALVLYRAPPLLWRKVQPNAMG---A 460 (487)
T ss_pred HHHHHcCCcceEcccCCccceecCccchhccCceeEEEEecCC--HHHHHHHHHHHHHHhhCCHHHHHHHHHhhcc---c
Confidence 999999999999999999999875 57999999988 9999999998876 4444 7777776665 5
Q ss_pred HcChhHHHHHHHHHHHHHHHhhh
Q 012132 444 IFQEHHMAERIAVVLKEVLKKSK 466 (470)
Q Consensus 444 ~fs~~~~~~~~~~~~~~~l~~~~ 466 (470)
.|+|+..+.+|.++|+.++....
T Consensus 461 d~sw~~sa~~y~~lY~~~~~~~~ 483 (487)
T COG0297 461 DFSWDLSAKEYVELYKPLLSKPF 483 (487)
T ss_pred ccCchhHHHHHHHHHHHHhcccc
Confidence 69999999999999999987543
No 68
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.97 E-value=6.5e-29 Score=239.27 Aligned_cols=323 Identities=15% Similarity=0.081 Sum_probs=221.9
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC-------------
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------------- 140 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 140 (470)
||||++++... ||.+++..+|+++|.++||+|++++...... .......|+.++...
T Consensus 1 ~~~i~i~~~g~--gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~~l 70 (357)
T PRK00726 1 MKKILLAGGGT--GGHVFPALALAEELKKRGWEVLYLGTARGME--------ARLVPKAGIEFHFIPSGGLRRKGSLANL 70 (357)
T ss_pred CcEEEEEcCcc--hHhhhHHHHHHHHHHhCCCEEEEEECCCchh--------hhccccCCCcEEEEeccCcCCCChHHHH
Confidence 38899988544 5778889999999999999999998644211 111111344333221
Q ss_pred -----------ChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeee
Q 012132 141 -----------GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID 209 (470)
Q Consensus 141 -----------~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 209 (470)
....+.+..+||+||+|+........ ...... ..|++++.|+...... ....+...+.+++.
T Consensus 71 ~~~~~~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~-~~~~~~---~~p~v~~~~~~~~~~~---~r~~~~~~d~ii~~ 143 (357)
T PRK00726 71 KAPFKLLKGVLQARKILKRFKPDVVVGFGGYVSGPGG-LAARLL---GIPLVIHEQNAVPGLA---NKLLARFAKKVATA 143 (357)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEECCCcchhHHH-HHHHHc---CCCEEEEcCCCCccHH---HHHHHHHhchheEC
Confidence 11234456789999999855433222 222211 2466666554322211 11123344555554
Q ss_pred ehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHH
Q 012132 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (470)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll 289 (470)
+... +. . .+..++++++||++.+.+.+.. .+++++++++.++++++|+....|++..++
T Consensus 144 ~~~~---~~-----~--~~~~~i~vi~n~v~~~~~~~~~-----------~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l 202 (357)
T PRK00726 144 FPGA---FP-----E--FFKPKAVVTGNPVREEILALAA-----------PPARLAGREGKPTLLVVGGSQGARVLNEAV 202 (357)
T ss_pred chhh---hh-----c--cCCCCEEEECCCCChHhhcccc-----------hhhhccCCCCCeEEEEECCcHhHHHHHHHH
Confidence 4311 11 1 4678899999999987654321 123466667778888999888888765555
Q ss_pred -HHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcc
Q 012132 290 -HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWG 368 (470)
Q Consensus 290 -~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~ 368 (470)
+|++++.+ . + ..++++|+| +. +.+.+..+ +++. |.+.|+.+++.++|+.||+++.+|-
T Consensus 203 ~~a~~~~~~-------~-~-~~~~~~G~g-----~~-~~~~~~~~-~~~~--v~~~g~~~~~~~~~~~~d~~i~~~g--- 261 (357)
T PRK00726 203 PEALALLPE-------A-L-QVIHQTGKG-----DL-EEVRAAYA-AGIN--AEVVPFIDDMAAAYAAADLVICRAG--- 261 (357)
T ss_pred HHHHHHhhh-------C-c-EEEEEcCCC-----cH-HHHHHHhh-cCCc--EEEeehHhhHHHHHHhCCEEEECCC---
Confidence 88877632 1 3 567788998 33 45554555 6664 9999999999999999999997663
Q ss_pred cccchHHHHHHhcCCCEEecCCCCc--------ceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012132 369 ECFGRITIEAMAFQLPVLGTAAGGT--------TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYER 440 (470)
Q Consensus 369 E~~g~~~lEAma~G~PvI~s~~~g~--------~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~ 440 (470)
+++++|||++|+|+|++..++. .+.+.+.++|+++++.|.++++|+++|.++++|++.++.|+++++++
T Consensus 262 ---~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 338 (357)
T PRK00726 262 ---ASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARAL 338 (357)
T ss_pred ---HHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhc
Confidence 6899999999999999876532 35566778999998876558999999999999999999999999998
Q ss_pred HHHHcChhHHHHHHHHHHH
Q 012132 441 VKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 441 ~~~~fs~~~~~~~~~~~~~ 459 (470)
+ +.++.+.+++.+.++.+
T Consensus 339 ~-~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 339 G-KPDAAERLADLIEELAR 356 (357)
T ss_pred C-CcCHHHHHHHHHHHHhh
Confidence 6 44888999888877654
No 69
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.97 E-value=1.2e-27 Score=235.73 Aligned_cols=335 Identities=15% Similarity=0.139 Sum_probs=222.2
Q ss_pred chhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceee--EecC---ChhhHHhhcCCcEEEEcccchh
Q 012132 88 GGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--ISAK---GQETINTALKADLIVLNTAVAG 162 (470)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~DiV~~~~~~~~ 162 (470)
|-...+..|++.|.++++++.++........... .......++.+ .+.. ..+.+.+..+||+||++....
T Consensus 61 Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~----~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd~v~~~~~~~- 135 (425)
T PRK05749 61 GETRAAIPLIRALRKRYPDLPILVTTMTPTGSER----AQALFGDDVEHRYLPYDLPGAVRRFLRFWRPKLVIIMETEL- 135 (425)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHH----HHHhcCCCceEEEecCCcHHHHHHHHHhhCCCEEEEEecch-
Confidence 4458899999999998766544332111111111 11111222322 3332 234566789999999874322
Q ss_pred hhHHHHhhhcCCccccceeeEEeeecccc------chhhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEe
Q 012132 163 KWLDAVLKEDVPRVLPNVLWWIHEMRGHY------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVH 236 (470)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~h~~~~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ 236 (470)
|...+..... ...|++.+.|...... +.......+..++.+++.|....+.+. .+|++.+ +.+++
T Consensus 136 -~~~~l~~~~~--~~ip~vl~~~~~~~~s~~~~~~~~~~~r~~~~~~d~ii~~S~~~~~~l~-----~~g~~~~-i~vi~ 206 (425)
T PRK05749 136 -WPNLIAELKR--RGIPLVLANARLSERSFKRYQKFKRFYRLLFKNIDLVLAQSEEDAERFL-----ALGAKNE-VTVTG 206 (425)
T ss_pred -hHHHHHHHHH--CCCCEEEEeccCChhhHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHHH-----HcCCCCC-cEecc
Confidence 2111111111 1234544444322111 112233445667888888888876665 4576666 88998
Q ss_pred cCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeC
Q 012132 237 LGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 316 (470)
Q Consensus 237 ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~ 316 (470)
|+ +.+.+.+... ......+|++++ +++.+++++|+ ..|+.+.+++|++++.+ ++|+++|+|+|+
T Consensus 207 n~-~~d~~~~~~~----~~~~~~~r~~~~--~~~~vil~~~~--~~~~~~~ll~A~~~l~~-------~~~~~~liivG~ 270 (425)
T PRK05749 207 NL-KFDIEVPPEL----AARAATLRRQLA--PNRPVWIAAST--HEGEEELVLDAHRALLK-------QFPNLLLILVPR 270 (425)
T ss_pred cc-cccCCCChhh----HHHHHHHHHHhc--CCCcEEEEeCC--CchHHHHHHHHHHHHHH-------hCCCcEEEEcCC
Confidence 85 2322211111 112455777777 45667777775 36889999999998765 458999999999
Q ss_pred CCCcChHHH-HHHHHHHHhcCCCC-------------cEEEecccCCHHHHHHhcCEEEE-ccCCcccccchHHHHHHhc
Q 012132 317 DMNAQTKFE-SELRNYVMQKKIQD-------------RVHFVNKTLTVAPYLAAIDVLVQ-NSQAWGECFGRITIEAMAF 381 (470)
Q Consensus 317 g~~~~~~~~-~~l~~~~~~~~l~~-------------~V~~~g~~~~~~~~~~~aDv~v~-pS~~~~E~~g~~~lEAma~ 381 (470)
| +.+ ++++++++++|+.. +|.+.+...++..+|+.||++++ +|. .|++|.+++|||+|
T Consensus 271 g-----~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~--~e~~g~~~lEAma~ 343 (425)
T PRK05749 271 H-----PERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSL--VKRGGHNPLEPAAF 343 (425)
T ss_pred C-----hhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCc--CCCCCCCHHHHHHh
Confidence 8 454 78999999988852 34444445689999999999655 676 79999999999999
Q ss_pred CCCEEecCC-CCcceeeecC-ceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Q 012132 382 QLPVLGTAA-GGTTEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 382 G~PvI~s~~-~g~~e~v~~~-~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 459 (470)
|+|||+++. ++..|+++.. .+|.+++++| +++|+++|.++++|++.+++|++++++++.++ ....+++.+++.
T Consensus 344 G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~d--~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~---~~~~~~~~~~l~ 418 (425)
T PRK05749 344 GVPVISGPHTFNFKEIFERLLQAGAAIQVED--AEDLAKAVTYLLTDPDARQAYGEAGVAFLKQN---QGALQRTLQLLE 418 (425)
T ss_pred CCCEEECCCccCHHHHHHHHHHCCCeEEECC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC---ccHHHHHHHHHH
Confidence 999999864 5566665442 4688888888 99999999999999999999999999999764 467788888888
Q ss_pred HHHHh
Q 012132 460 EVLKK 464 (470)
Q Consensus 460 ~~l~~ 464 (470)
+.+++
T Consensus 419 ~~l~~ 423 (425)
T PRK05749 419 PYLPP 423 (425)
T ss_pred Hhccc
Confidence 77654
No 70
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.96 E-value=2.8e-28 Score=239.82 Aligned_cols=288 Identities=16% Similarity=0.101 Sum_probs=199.0
Q ss_pred cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch-------hhhhcccccccceeeeehhhHHHHHHhh
Q 012132 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-------LDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~-------~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
.+.|+|++|+....... ..++...+. .++.+..|...+..-. ....+.+-.++.+...+......+.+..
T Consensus 130 ~~~d~iwihDyhl~llp-~~lr~~~~~--~~i~~f~HipfP~~e~~~~lp~~~~ll~~~l~~D~igF~t~~~~~~Fl~~~ 206 (460)
T cd03788 130 RPGDLVWVHDYHLLLLP-QMLRERGPD--ARIGFFLHIPFPSSEIFRCLPWREELLRGLLGADLIGFQTERYARNFLSCC 206 (460)
T ss_pred CCCCEEEEeChhhhHHH-HHHHhhCCC--CeEEEEEeCCCCChHHHhhCCChHHHHHHHhcCCEEEECCHHHHHHHHHHH
Confidence 36799999997654433 333333332 4788889965533311 1112222233444444433333333332
Q ss_pred hhhhcc------------CCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHH
Q 012132 222 RERLRI------------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (470)
Q Consensus 222 ~~~~~~------------~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll 289 (470)
....+. ...++.++|||||.+.|.+..... ..++..++..+...++++|+++||+.+.||++.++
T Consensus 207 ~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~---~~~~~~~~~~~~~~~~~~il~vgRl~~~Kgi~~ll 283 (460)
T cd03788 207 SRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASP---EVQERAAELRERLGGRKLIVGVDRLDYSKGIPERL 283 (460)
T ss_pred HHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCc---hhHHHHHHHHHhcCCCEEEEEecCccccCCHHHHH
Confidence 222221 234689999999999997653221 11233334445556788999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCc----eEEEEEeCCCCcChH----HHHHHHHHHHhcCCC------CcEEEe-cc--cCCHHH
Q 012132 290 HSFYESLELIKEKKLEVPS----VHAVIIGSDMNAQTK----FESELRNYVMQKKIQ------DRVHFV-NK--TLTVAP 352 (470)
Q Consensus 290 ~a~~~l~~~l~~~~~~~~~----~~l~ivG~g~~~~~~----~~~~l~~~~~~~~l~------~~V~~~-g~--~~~~~~ 352 (470)
+|++.+.+ ++|+ ++|+++|.+..++.+ +.+++++++.+++.. ..|+++ |. .+++..
T Consensus 284 ~A~~~ll~-------~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~ 356 (460)
T cd03788 284 LAFERLLE-------RYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAA 356 (460)
T ss_pred HHHHHHHH-------hChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHH
Confidence 99998866 3354 778888765322212 444555555443321 235554 54 489999
Q ss_pred HHHhcCEEEEccCCcccccchHHHHHHhcCCC----EEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhC-H
Q 012132 353 YLAAIDVLVQNSQAWGECFGRITIEAMAFQLP----VLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH-V 427 (470)
Q Consensus 353 ~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~P----vI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~-~ 427 (470)
+|+.||++|+||. .||||++++|||+||+| ||+|+.+|..+. +.+|+++++.| +++++++|.+++++ +
T Consensus 357 ~y~~aDv~v~pS~--~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---~~~g~lv~p~d--~~~la~ai~~~l~~~~ 429 (460)
T cd03788 357 LYRAADVALVTPL--RDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE---LSGALLVNPYD--IDEVADAIHRALTMPL 429 (460)
T ss_pred HHHhccEEEeCcc--ccccCcccceeEEEecCCCceEEEeccccchhh---cCCCEEECCCC--HHHHHHHHHHHHcCCH
Confidence 9999999999999 99999999999999999 999998888776 46799999999 99999999999985 5
Q ss_pred HHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Q 012132 428 ERRLTMGKRGYERVKEIFQEHHMAERIAVV 457 (470)
Q Consensus 428 ~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~ 457 (470)
+.++.+++++++++. .||++.++++++.-
T Consensus 430 ~e~~~~~~~~~~~v~-~~~~~~w~~~~l~~ 458 (460)
T cd03788 430 EERRERHRKLREYVR-THDVQAWANSFLDD 458 (460)
T ss_pred HHHHHHHHHHHHHHH-hCCHHHHHHHHHHh
Confidence 778888999999885 59999999988753
No 71
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.96 E-value=9.8e-28 Score=233.76 Aligned_cols=289 Identities=17% Similarity=0.139 Sum_probs=204.5
Q ss_pred cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc-------chhhhhcccccccceeeeehhhHHHHHHhh
Q 012132 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
..-|+|.+|+...... ...++...+. .++.+..|..++.. +.....+.+-.++.+...+......+....
T Consensus 126 ~~~d~vwvhDYhl~l~-p~~lr~~~~~--~~igfFlHipfP~~e~f~~lp~r~~il~gll~~dligF~t~~~~~~Fl~~~ 202 (456)
T TIGR02400 126 QPGDIVWVHDYHLMLL-PAMLRELGVQ--NKIGFFLHIPFPSSEIYRTLPWRRELLEGLLAYDLVGFQTYDDARNFLSAV 202 (456)
T ss_pred CCCCEEEEecchhhHH-HHHHHhhCCC--CeEEEEEeCCCCChHHHhhCCcHHHHHHHHhcCCEEEECCHHHHHHHHHHH
Confidence 3458999998765443 3344444443 46777888654332 112233333344555555555554444443
Q ss_pred hhhhcc-----------CCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHH
Q 012132 222 RERLRI-----------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLH 290 (470)
Q Consensus 222 ~~~~~~-----------~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~ 290 (470)
.+.++. ...++.++|||+|.+.|.+.............+|++++ ++.+|+++||+++.||++.+++
T Consensus 203 ~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~---~~~vIl~VgRLd~~KGi~~ll~ 279 (456)
T TIGR02400 203 SRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESLK---GRKLIIGVDRLDYSKGLPERLL 279 (456)
T ss_pred HHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHcC---CCeEEEEccccccccCHHHHHH
Confidence 333332 34568899999999999876433222222345777763 6788999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCc----eEEEEEeCCCCcChHHHHHHHHHHHhc--------CCCC--cEEEec-c--cCCHHHH
Q 012132 291 SFYESLELIKEKKLEVPS----VHAVIIGSDMNAQTKFESELRNYVMQK--------KIQD--RVHFVN-K--TLTVAPY 353 (470)
Q Consensus 291 a~~~l~~~l~~~~~~~~~----~~l~ivG~g~~~~~~~~~~l~~~~~~~--------~l~~--~V~~~g-~--~~~~~~~ 353 (470)
|++++.+ ++|+ +.|+++|....++.+...++++.++++ +..+ .+++++ . .+++.++
T Consensus 280 A~~~ll~-------~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~al 352 (456)
T TIGR02400 280 AFERFLE-------EHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMAL 352 (456)
T ss_pred HHHHHHH-------hCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHH
Confidence 9999866 3354 668877643222224555666666554 1111 155554 3 4899999
Q ss_pred HHhcCEEEEccCCcccccchHHHHHHhcCCC----EEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHh-CHH
Q 012132 354 LAAIDVLVQNSQAWGECFGRITIEAMAFQLP----VLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVE 428 (470)
Q Consensus 354 ~~~aDv~v~pS~~~~E~~g~~~lEAma~G~P----vI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~ 428 (470)
|++||++++||. .||||++++||||||+| +|+|+.+|..+.+. +|++++|.| +++++++|.++++ +++
T Consensus 353 y~aaDv~vv~S~--~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l~---~gllVnP~d--~~~lA~aI~~aL~~~~~ 425 (456)
T TIGR02400 353 YRAADVGLVTPL--RDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQELN---GALLVNPYD--IDGMADAIARALTMPLE 425 (456)
T ss_pred HHhCcEEEECcc--ccccCccHHHHHHhcCCCCceEEEeCCCCChHHhC---CcEEECCCC--HHHHHHHHHHHHcCCHH
Confidence 999999999999 99999999999999999 99999988888773 799999999 9999999999998 577
Q ss_pred HHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Q 012132 429 RRLTMGKRGYERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 429 ~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 458 (470)
.++++.+++++++.+ ||+..+++++++-+
T Consensus 426 er~~r~~~~~~~v~~-~~~~~W~~~~l~~l 454 (456)
T TIGR02400 426 EREERHRAMMDKLRK-NDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHHHHHHHHHhh-CCHHHHHHHHHHHh
Confidence 888889999999865 99999999988644
No 72
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.96 E-value=9.1e-28 Score=231.39 Aligned_cols=303 Identities=17% Similarity=0.149 Sum_probs=198.8
Q ss_pred cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc--hh---------------------------hhhcc
Q 012132 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF--KL---------------------------DYVKH 199 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~--~~---------------------------~~~~~ 199 (470)
.++|++|+|....+..+..+.+... ..+.++|.|....... .. .....
T Consensus 147 ~~~dViH~HeWm~g~a~~~lK~~~~---~VptVfTtHAT~~GR~l~~g~~~~y~~l~~~~~d~eA~~~~I~~r~~iE~~a 223 (590)
T cd03793 147 EPAVVAHFHEWQAGVGLPLLRKRKV---DVSTIFTTHATLLGRYLCAGNVDFYNNLDYFDVDKEAGKRGIYHRYCIERAA 223 (590)
T ss_pred CCCeEEEEcchhHhHHHHHHHHhCC---CCCEEEEecccccccccccCCcccchhhhhcchhhhhhcccchHHHHHHHHH
Confidence 5799999999776665544433222 2578999996432221 00 01112
Q ss_pred cccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHH-----H----HHHHHHHHHHcCCCCCC
Q 012132 200 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVA-----K----RVLREHVRESLGVRNED 270 (470)
Q Consensus 200 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~-----~----~~~~~~~r~~~~~~~~~ 270 (470)
...++.++++|..+..... .-|+.++++ |||||+|.+.|....+... + ...+..++.+++++.++
T Consensus 224 a~~Ad~fttVS~it~~E~~----~Ll~~~pd~--ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~~~~d~ 297 (590)
T cd03793 224 AHCAHVFTTVSEITAYEAE----HLLKRKPDV--VLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYDFDLDK 297 (590)
T ss_pred HhhCCEEEECChHHHHHHH----HHhCCCCCE--EeCCCcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcCCCCCC
Confidence 2345667777777755544 367777776 9999999999876542110 0 11234467778887777
Q ss_pred eEEEE-Eeeccc-CCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcC-------hHHHHHH-------------
Q 012132 271 LLFAI-INSVSR-GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ-------TKFESEL------------- 328 (470)
Q Consensus 271 ~~i~~-vGrl~~-~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~-------~~~~~~l------------- 328 (470)
.++++ +||++. +||+|.+|+|++++...++..+.+..=+-|+|+-.+...- .+..+++
T Consensus 298 tli~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~ 377 (590)
T cd03793 298 TLYFFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGK 377 (590)
T ss_pred eEEEEEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhh
Confidence 77766 799988 9999999999999988777643222223444443331100 0111111
Q ss_pred ------------------------------------------------------HHHHHhcCCC----Cc--EEEecc--
Q 012132 329 ------------------------------------------------------RNYVMQKKIQ----DR--VHFVNK-- 346 (470)
Q Consensus 329 ------------------------------------------------------~~~~~~~~l~----~~--V~~~g~-- 346 (470)
-..+++++|- ++ |+|++.
T Consensus 378 ~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L 457 (590)
T cd03793 378 RLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFL 457 (590)
T ss_pred hhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEccccc
Confidence 1122222232 22 455552
Q ss_pred -------cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCc----ceeeecC-ceeeeecCCC----
Q 012132 347 -------TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT----TEIVVNG-TTGLLHPVGK---- 410 (470)
Q Consensus 347 -------~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~----~e~v~~~-~~G~l~~~~d---- 410 (470)
-.+..++|+.||++|+||. +|+||++++||||||+|||+|+.+|. .|++.++ ..|+.+.+.+
T Consensus 458 ~~~~~~~g~~y~E~~~g~dl~v~PS~--yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~ 535 (590)
T cd03793 458 SSTNPLLGLDYEEFVRGCHLGVFPSY--YEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSP 535 (590)
T ss_pred CCCCCcCCcchHHHhhhceEEEeccc--cCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccch
Confidence 1457889999999999999 99999999999999999999999988 5666544 3566665221
Q ss_pred -CChHHHHHHHHHHHhCHHHHHHHHHHHH-HHHHHHcChhHHHHHHHHHHHHHHH
Q 012132 411 -EGITPLAKNIVKLATHVERRLTMGKRGY-ERVKEIFQEHHMAERIAVVLKEVLK 463 (470)
Q Consensus 411 -~~~~~la~~i~~ll~~~~~~~~~~~~a~-~~~~~~fs~~~~~~~~~~~~~~~l~ 463 (470)
+++++++++|.++++. +.++.+.++++ +...+.|+|++.++.|.+.|..++.
T Consensus 536 ~e~v~~La~~m~~~~~~-~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 536 DESVQQLTQYMYEFCQL-SRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred HHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 1378899999998854 45666655543 3445679999999999999998875
No 73
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.96 E-value=1.9e-27 Score=230.86 Aligned_cols=338 Identities=11% Similarity=0.062 Sum_probs=225.8
Q ss_pred cccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecCCCCCc---hhH-HHhh----------hhhhhhcceeeE
Q 012132 73 KSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQKPSEE---DEV-IYSL----------EHKMWDRGVQVI 137 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~~~~~---~~~-~~~~----------~~~~~~~~~~~~ 137 (470)
+.||||+++..+ ||| ...+..++++|.++||+|++++....... ... ...+ .......+-...
T Consensus 3 ~~~rili~t~~~--G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
T PRK13609 3 KNPKVLILTAHY--GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITEITKYLYLKSYTIGKELYRLFYYGVEKIY 80 (380)
T ss_pred CCCeEEEEEcCC--CchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHhccCccc
Confidence 467999999776 544 68899999999999999777763322111 010 0000 000000000000
Q ss_pred e-----------cCChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccce
Q 012132 138 S-----------AKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGA 206 (470)
Q Consensus 138 ~-----------~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~ 206 (470)
. ......+.+..+||+||++.+..... .+.+... ...|++..+++.. .......+..+.+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~--~~~~~~~--~~ip~~~~~td~~-----~~~~~~~~~ad~i 151 (380)
T PRK13609 81 DKKIFSWYANFGRKRLKLLLQAEKPDIVINTFPIIAVP--ELKKQTG--ISIPTYNVLTDFC-----LHKIWVHREVDRY 151 (380)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCcCEEEEcChHHHHH--HHHHhcC--CCCCeEEEeCCCC-----CCcccccCCCCEE
Confidence 0 12234555678999999987654322 2222211 1245554444321 1112234577888
Q ss_pred eeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCC-eEEEEEeecccCCCH
Q 012132 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED-LLFAIINSVSRGKGQ 285 (470)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~i~~vGrl~~~Kg~ 285 (470)
++.+....+.+. ++|++.+++.+++++++.....+.. +..+++++++++++ .++++.|++...|++
T Consensus 152 ~~~s~~~~~~l~-----~~gi~~~ki~v~G~p~~~~f~~~~~--------~~~~~~~~~l~~~~~~il~~~G~~~~~k~~ 218 (380)
T PRK13609 152 FVATDHVKKVLV-----DIGVPPEQVVETGIPIRSSFELKIN--------PDIIYNKYQLCPNKKILLIMAGAHGVLGNV 218 (380)
T ss_pred EECCHHHHHHHH-----HcCCChhHEEEECcccChHHcCcCC--------HHHHHHHcCCCCCCcEEEEEcCCCCCCcCH
Confidence 888877765554 4578888888887777543321111 23478889998765 456667888888999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccC
Q 012132 286 DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 365 (470)
Q Consensus 286 ~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~ 365 (470)
+.+++++.+. ++++++++|++. ++..+.+++++++++ ++|+|+|+++++.++|+.||+++.
T Consensus 219 ~~li~~l~~~-----------~~~~~viv~G~~---~~~~~~l~~~~~~~~--~~v~~~g~~~~~~~l~~~aD~~v~--- 279 (380)
T PRK13609 219 KELCQSLMSV-----------PDLQVVVVCGKN---EALKQSLEDLQETNP--DALKVFGYVENIDELFRVTSCMIT--- 279 (380)
T ss_pred HHHHHHHhhC-----------CCcEEEEEeCCC---HHHHHHHHHHHhcCC--CcEEEEechhhHHHHHHhccEEEe---
Confidence 9999887532 688988875421 146778888877665 689999999999999999999883
Q ss_pred CcccccchHHHHHHhcCCCEEecC-CCCcc----eeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012132 366 AWGECFGRITIEAMAFQLPVLGTA-AGGTT----EIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYER 440 (470)
Q Consensus 366 ~~~E~~g~~~lEAma~G~PvI~s~-~~g~~----e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~ 440 (470)
++.|++++|||+||+|||+++ .+|.. +.+. ++|..+...| +++++++|.++++|++.+++|++++++.
T Consensus 280 ---~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~--~~G~~~~~~~--~~~l~~~i~~ll~~~~~~~~m~~~~~~~ 352 (380)
T PRK13609 280 ---KPGGITLSEAAALGVPVILYKPVPGQEKENAMYFE--RKGAAVVIRD--DEEVFAKTEALLQDDMKLLQMKEAMKSL 352 (380)
T ss_pred ---CCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHH--hCCcEEEECC--HHHHHHHHHHHHCCHHHHHHHHHHHHHh
Confidence 345899999999999999986 55521 2332 2455555666 9999999999999999999999999876
Q ss_pred HHHHcChhHHHHHHHHHHHHH
Q 012132 441 VKEIFQEHHMAERIAVVLKEV 461 (470)
Q Consensus 441 ~~~~fs~~~~~~~~~~~~~~~ 461 (470)
.. .++++++++.+++.+...
T Consensus 353 ~~-~~s~~~i~~~i~~~~~~~ 372 (380)
T PRK13609 353 YL-PEPADHIVDDILAENHVE 372 (380)
T ss_pred CC-CchHHHHHHHHHHhhhhh
Confidence 64 489999999998887654
No 74
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.96 E-value=1.4e-27 Score=229.58 Aligned_cols=313 Identities=15% Similarity=0.119 Sum_probs=210.3
Q ss_pred EEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEec--C--------------
Q 012132 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA--K-------------- 140 (470)
Q Consensus 77 Il~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------------- 140 (470)
|++.+... ||..+++..++++|.++||+|++++....... ......++.+... .
T Consensus 2 ~~~~~~~~--gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (350)
T cd03785 2 ILIAGGGT--GGHIFPALALAEELRERGAEVLFLGTKRGLEA--------RLVPKAGIPLHTIPVGGLRRKGSLKKLKAP 71 (350)
T ss_pred EEEEecCc--hhhhhHHHHHHHHHHhCCCEEEEEECCCcchh--------hcccccCCceEEEEecCcCCCChHHHHHHH
Confidence 55555333 56688999999999999999999986543211 1111122322211 1
Q ss_pred --------ChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehh
Q 012132 141 --------GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHV 212 (470)
Q Consensus 141 --------~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~ 212 (470)
....+.+..+||+||+|..........+.+. . ..|++.+.|+..... .........+.+++.+..
T Consensus 72 ~~~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~-~---~~p~v~~~~~~~~~~---~~~~~~~~~~~vi~~s~~ 144 (350)
T cd03785 72 FKLLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKL-L---GIPLVIHEQNAVPGL---ANRLLARFADRVALSFPE 144 (350)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHH-h---CCCEEEEcCCCCccH---HHHHHHHhhCEEEEcchh
Confidence 1123446689999999976543322222211 1 134555444332211 111122345666666555
Q ss_pred hHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHH-HHHH
Q 012132 213 TAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDL-FLHS 291 (470)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~-ll~a 291 (470)
..+. ++..++.+++||+|.+.+.+.+ . ++++++++++++++++|+....|+.+. ++++
T Consensus 145 ~~~~----------~~~~~~~~i~n~v~~~~~~~~~----------~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a 203 (350)
T cd03785 145 TAKY----------FPKDKAVVTGNPVREEILALDR----------E-RARLGLRPGKPTLLVFGGSQGARAINEAVPEA 203 (350)
T ss_pred hhhc----------CCCCcEEEECCCCchHHhhhhh----------h-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHH
Confidence 4332 3567899999999988765321 1 677888888888888887766777654 5577
Q ss_pred HHHHHHHHHhhcccCCceE-EEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccc
Q 012132 292 FYESLELIKEKKLEVPSVH-AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGEC 370 (470)
Q Consensus 292 ~~~l~~~l~~~~~~~~~~~-l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~ 370 (470)
++.+.+ +++. ++++|+| ..+++++.++++ .++|++.|+.+++.++|+.||++|.+|-
T Consensus 204 ~~~l~~---------~~~~~~~i~G~g------~~~~l~~~~~~~--~~~v~~~g~~~~~~~~l~~ad~~v~~sg----- 261 (350)
T cd03785 204 LAELLR---------KRLQVIHQTGKG------DLEEVKKAYEEL--GVNYEVFPFIDDMAAAYAAADLVISRAG----- 261 (350)
T ss_pred HHHhhc---------cCeEEEEEcCCc------cHHHHHHHHhcc--CCCeEEeehhhhHHHHHHhcCEEEECCC-----
Confidence 776632 4555 4577776 346677777766 4689999999999999999999997652
Q ss_pred cchHHHHHHhcCCCEEecCCCC--------cceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 012132 371 FGRITIEAMAFQLPVLGTAAGG--------TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK 442 (470)
Q Consensus 371 ~g~~~lEAma~G~PvI~s~~~g--------~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 442 (470)
+++++|||++|+|||+++.++ ..+.+.+.++|+++++++.|+++++++|.++++|++.+++|++++++++.
T Consensus 262 -~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~ 340 (350)
T cd03785 262 -ASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAARSLAR 340 (350)
T ss_pred -HhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 689999999999999987654 23556667899999987222999999999999999999999999998764
Q ss_pred HHcChhHHH
Q 012132 443 EIFQEHHMA 451 (470)
Q Consensus 443 ~~fs~~~~~ 451 (470)
.+..++++
T Consensus 341 -~~~~~~i~ 348 (350)
T cd03785 341 -PDAAERIA 348 (350)
T ss_pred -CCHHHHHH
Confidence 35555554
No 75
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.96 E-value=3.3e-27 Score=226.93 Aligned_cols=312 Identities=15% Similarity=0.121 Sum_probs=204.7
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC--------------
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-------------- 140 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 140 (470)
|||+|++... +|......+|+++|.++||+|++++....... ......|+.+....
T Consensus 1 ~~i~~~~g~~--~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~--------~~~~~~g~~~~~i~~~~~~~~~~~~~l~ 70 (348)
T TIGR01133 1 KKVVLAAGGT--GGHIFPALAVAEELIKRGVEVLWLGTKRGLEK--------RLVPKAGIEFYFIPVGGLRRKGSFRLIK 70 (348)
T ss_pred CeEEEEeCcc--HHHHhHHHHHHHHHHhCCCEEEEEeCCCcchh--------cccccCCCceEEEeccCcCCCChHHHHH
Confidence 5888888544 45555667999999999999999985332110 11112333332211
Q ss_pred ----------ChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeee
Q 012132 141 ----------GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDS 210 (470)
Q Consensus 141 ----------~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s 210 (470)
....+.+..+||+||+|..........+.+ ... .|++.+.++... ........+..+.+++.+
T Consensus 71 ~~~~~~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~-~~~---~p~v~~~~~~~~---~~~~~~~~~~~d~ii~~~ 143 (348)
T TIGR01133 71 TPLKLLKAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAK-LLG---IPLFHHEQNAVP---GLTNKLLSRFAKKVLISF 143 (348)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHH-HcC---CCEEEECCCCCc---cHHHHHHHHHhCeeEECc
Confidence 122345668999999997654333222111 111 244433332111 111122234566777766
Q ss_pred hhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHH-HH
Q 012132 211 HVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDL-FL 289 (470)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~-ll 289 (470)
....+++ +..+|+||++...+.+.. .+++++++++.++++++|+....|++.. ++
T Consensus 144 ~~~~~~~-------------~~~~i~n~v~~~~~~~~~-----------~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~ 199 (348)
T TIGR01133 144 PGAKDHF-------------EAVLVGNPVRQEIRSLPV-----------PRERFGLREGKPTILVLGGSQGAKILNELVP 199 (348)
T ss_pred hhHhhcC-------------CceEEcCCcCHHHhcccc-----------hhhhcCCCCCCeEEEEECCchhHHHHHHHHH
Confidence 6553322 247999999877654321 1235678778889999998777888654 55
Q ss_pred HHHHHHHHHHHhhcccCCceEEEE-EeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcc
Q 012132 290 HSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWG 368 (470)
Q Consensus 290 ~a~~~l~~~l~~~~~~~~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~ 368 (470)
+|++.+.+ ++.++++ +|++ ..+.+++.++++++.+.+.|. .. ++.++|++||++|.+|-
T Consensus 200 ~a~~~l~~---------~~~~~~~~~g~~------~~~~l~~~~~~~~l~~~v~~~-~~-~~~~~l~~ad~~v~~~g--- 259 (348)
T TIGR01133 200 KALAKLAE---------KGIQIVHQTGKN------DLEKVKNVYQELGIEAIVTFI-DE-NMAAAYAAADLVISRAG--- 259 (348)
T ss_pred HHHHHHhh---------cCcEEEEECCcc------hHHHHHHHHhhCCceEEecCc-cc-CHHHHHHhCCEEEECCC---
Confidence 78876643 3455544 4444 346788888888876666666 33 89999999999997541
Q ss_pred cccchHHHHHHhcCCCEEecCCCC-------cceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 012132 369 ECFGRITIEAMAFQLPVLGTAAGG-------TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERV 441 (470)
Q Consensus 369 E~~g~~~lEAma~G~PvI~s~~~g-------~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 441 (470)
|++++|||++|+|+|+++.++ ..+++.++++|++++++|.++++++++|.++++|++.+++|++++++++
T Consensus 260 ---~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 336 (348)
T TIGR01133 260 ---ASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAMAEAARKLA 336 (348)
T ss_pred ---hhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcC
Confidence 789999999999999998754 2356778889999988654599999999999999999999999998866
Q ss_pred HHHcChhHHH
Q 012132 442 KEIFQEHHMA 451 (470)
Q Consensus 442 ~~~fs~~~~~ 451 (470)
.+ ...++++
T Consensus 337 ~~-~~~~~i~ 345 (348)
T TIGR01133 337 KP-DAAKRIA 345 (348)
T ss_pred Cc-cHHHHHH
Confidence 43 4444443
No 76
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.95 E-value=2.1e-27 Score=204.13 Aligned_cols=169 Identities=29% Similarity=0.497 Sum_probs=153.1
Q ss_pred HHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcC
Q 012132 257 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK 336 (470)
Q Consensus 257 ~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~ 336 (470)
++..+.+.+.+.++++|+++||+.+.||++.+++++..+.+.. .+++.++|+|.+ ++...++..++.++
T Consensus 2 ~~~~~~~~~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~------~~~~~l~i~G~~-----~~~~~~~~~~~~~~ 70 (172)
T PF00534_consen 2 KDKLREKLKIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKK------NPNYKLVIVGDG-----EYKKELKNLIEKLN 70 (172)
T ss_dssp HHHHHHHTTT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHH------HTTEEEEEESHC-----CHHHHHHHHHHHTT
T ss_pred hHHHHHHcCCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhc------CCCeEEEEEccc-----cccccccccccccc
Confidence 5677888888899999999999999999999999999886531 289999999976 58888999999999
Q ss_pred CCCcEEEecccC--CHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChH
Q 012132 337 IQDRVHFVNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGIT 414 (470)
Q Consensus 337 l~~~V~~~g~~~--~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~ 414 (470)
+.++++|+|... ++..+|+.||++++||. .|+||++++|||++|+|||+++.|+..|++.++.+|+++++.| ++
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di~v~~s~--~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~~~~~--~~ 146 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDIFVSPSR--NEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFLFDPND--IE 146 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSEEEE-BS--SBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEESTTS--HH
T ss_pred ccccccccccccccccccccccceecccccc--ccccccccccccccccceeeccccCCceeeccccceEEeCCCC--HH
Confidence 999999999875 99999999999999999 8999999999999999999999999999999999999999998 99
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012132 415 PLAKNIVKLATHVERRLTMGKRGYER 440 (470)
Q Consensus 415 ~la~~i~~ll~~~~~~~~~~~~a~~~ 440 (470)
+++++|.+++++++.++.|+++++++
T Consensus 147 ~l~~~i~~~l~~~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 147 ELADAIEKLLNDPELRQKLGKNARER 172 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHhcCC
Confidence 99999999999999999999999875
No 77
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.95 E-value=3.8e-26 Score=221.24 Aligned_cols=274 Identities=12% Similarity=0.077 Sum_probs=188.3
Q ss_pred hHHhhcCCcEEEEcccchhhh---HHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHh
Q 012132 144 TINTALKADLIVLNTAVAGKW---LDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNR 220 (470)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 220 (470)
++.+..+||+||++.+..... +....+... ....|++..+++.. ........+..+.+++.+....+.+.
T Consensus 94 ~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~-~~~~p~~~~~tD~~----~~~~~w~~~~~d~~~~~s~~~~~~l~-- 166 (382)
T PLN02605 94 KGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKEL-GKKIPFTTVVTDLG----TCHPTWFHKGVTRCFCPSEEVAKRAL-- 166 (382)
T ss_pred HHHHhcCcCEEEEeCcCcccCHHHHHHHHhhcc-CCCCCEEEEECCCC----CcCcccccCCCCEEEECCHHHHHHHH--
Confidence 455678999999977663221 111111101 12245665555542 11122234567777877766655444
Q ss_pred hhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHH
Q 012132 221 TRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIK 300 (470)
Q Consensus 221 ~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~ 300 (470)
.+|++.+++.+++++++.+.+.+.. .+..+|+++|++++.++++++|+....|++..+++++..+.....
T Consensus 167 ---~~g~~~~ki~v~g~~v~~~f~~~~~-------~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~ 236 (382)
T PLN02605 167 ---KRGLEPSQIRVYGLPIRPSFARAVR-------PKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKN 236 (382)
T ss_pred ---HcCCCHHHEEEECcccCHhhccCCC-------CHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhcccc
Confidence 4588889999999999876543321 145689999999899999999999899999999999876431000
Q ss_pred hhcccCCceE-EEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHH
Q 012132 301 EKKLEVPSVH-AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM 379 (470)
Q Consensus 301 ~~~~~~~~~~-l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAm 379 (470)
. ..++.+ ++++|.+. +..+.+++. ....+|+|+|+++++.++|++||++|.++ .|++++|||
T Consensus 237 ~---~~~~~~~~vi~G~~~----~~~~~L~~~----~~~~~v~~~G~~~~~~~l~~aaDv~V~~~------g~~ti~EAm 299 (382)
T PLN02605 237 L---GKPIGQVVVICGRNK----KLQSKLESR----DWKIPVKVRGFVTNMEEWMGACDCIITKA------GPGTIAEAL 299 (382)
T ss_pred c---cCCCceEEEEECCCH----HHHHHHHhh----cccCCeEEEeccccHHHHHHhCCEEEECC------CcchHHHHH
Confidence 0 125565 66777652 234555443 22357999999999999999999999654 378999999
Q ss_pred hcCCCEEecCC------CCcceeeecCceeeeecCCCCChHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHcChhHHHH
Q 012132 380 AFQLPVLGTAA------GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH-VERRLTMGKRGYERVKEIFQEHHMAE 452 (470)
Q Consensus 380 a~G~PvI~s~~------~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~-~~~~~~~~~~a~~~~~~~fs~~~~~~ 452 (470)
+||+|+|+++. |+...++ +++.|+.. +| +++++++|.++++| ++.+++|++++++.... .+.+.+++
T Consensus 300 a~g~PvI~~~~~pgqe~gn~~~i~-~~g~g~~~--~~--~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~-~a~~~i~~ 373 (382)
T PLN02605 300 IRGLPIILNGYIPGQEEGNVPYVV-DNGFGAFS--ES--PKEIARIVAEWFGDKSDELEAMSENALKLARP-EAVFDIVH 373 (382)
T ss_pred HcCCCEEEecCCCccchhhHHHHH-hCCceeec--CC--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-chHHHHHH
Confidence 99999999983 3443344 45567654 56 99999999999998 99999999999987643 56666666
Q ss_pred HHHHH
Q 012132 453 RIAVV 457 (470)
Q Consensus 453 ~~~~~ 457 (470)
.+.+.
T Consensus 374 ~l~~~ 378 (382)
T PLN02605 374 DLHEL 378 (382)
T ss_pred HHHHH
Confidence 66544
No 78
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.95 E-value=2.6e-25 Score=229.79 Aligned_cols=295 Identities=17% Similarity=0.154 Sum_probs=210.2
Q ss_pred CCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc-------hhhhhcccccccceeeeehhhHHHHHHhhh
Q 012132 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF-------KLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (470)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (470)
.-|+|.+|+..... +...++...+. .++.+..|..++..- .....+.+-.++.+-..+...+..+.+...
T Consensus 147 ~~d~vWvhDYhL~l-lp~~lR~~~~~--~~igfFlHiPFPs~e~fr~lp~r~~il~gll~aDligF~t~~y~r~Fl~~~~ 223 (797)
T PLN03063 147 EGDVVWCHDYHLMF-LPQYLKEYNNK--MKVGWFLHTPFPSSEIYKTLPSRSELLRAVLTADLIGFHTYDFARHFLSACT 223 (797)
T ss_pred CCCEEEEecchhhh-HHHHHHHhCCC--CcEEEEecCCCCCHHHHhhCCCHHHHHHHHhcCCEEEeCCHHHHHHHHHHHH
Confidence 45799999865543 33444444544 477888887654431 122333334445555555555555544333
Q ss_pred hhhcc-----------CCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHH
Q 012132 223 ERLRI-----------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 291 (470)
Q Consensus 223 ~~~~~-----------~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a 291 (470)
+.++. ...++.++|||||.+.|.+.............+++.++ ++.+|+++||+.+.||++.+++|
T Consensus 224 r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~---~~~lIl~VgRLd~~KGi~~lL~A 300 (797)
T PLN03063 224 RILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFFA---GRKVILGVDRLDMIKGIPQKYLA 300 (797)
T ss_pred HHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhcC---CCeEEEEecccccccCHHHHHHH
Confidence 33332 22468899999999998765332111222335566554 56788999999999999999999
Q ss_pred HHHHHHHHHhhcccCCce----EEEEEeCCCCcChHHHHHHHHHHHhcC--CCCc--------EEEec-c--cCCHHHHH
Q 012132 292 FYESLELIKEKKLEVPSV----HAVIIGSDMNAQTKFESELRNYVMQKK--IQDR--------VHFVN-K--TLTVAPYL 354 (470)
Q Consensus 292 ~~~l~~~l~~~~~~~~~~----~l~ivG~g~~~~~~~~~~l~~~~~~~~--l~~~--------V~~~g-~--~~~~~~~~ 354 (470)
++++.+ ++|++ .|+.++.....+.+..+++++.++++. +..+ |++++ . .+++..+|
T Consensus 301 fe~lL~-------~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly 373 (797)
T PLN03063 301 FEKFLE-------ENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALY 373 (797)
T ss_pred HHHHHH-------hCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHH
Confidence 999876 34654 455444322223356677777777664 3221 34444 2 27899999
Q ss_pred HhcCEEEEccCCcccccchHHHHHHhcCCC----EEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHh-CHHH
Q 012132 355 AAIDVLVQNSQAWGECFGRITIEAMAFQLP----VLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVER 429 (470)
Q Consensus 355 ~~aDv~v~pS~~~~E~~g~~~lEAma~G~P----vI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~ 429 (470)
+.||+||+||. .||||++++||||||+| +|+|+.+|..+.+ +.+|++++|.| +++++++|.++++ +++.
T Consensus 374 ~~ADvfvvtSl--rEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l--~~~allVnP~D--~~~lA~AI~~aL~m~~~e 447 (797)
T PLN03063 374 AITDVMLVTSL--RDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL--GAGALLVNPWN--ITEVSSAIKEALNMSDEE 447 (797)
T ss_pred HhCCEEEeCcc--ccccCcchhhHheeecCCCCCEEeeCCcCchhhh--cCCeEEECCCC--HHHHHHHHHHHHhCCHHH
Confidence 99999999999 99999999999999999 9999999998876 55799999999 9999999999999 7788
Q ss_pred HHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHh
Q 012132 430 RLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 464 (470)
Q Consensus 430 ~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~ 464 (470)
++++.+..++++.+ ++|..+++.+++.++++...
T Consensus 448 r~~r~~~~~~~v~~-~~~~~Wa~~fl~~l~~~~~~ 481 (797)
T PLN03063 448 RETRHRHNFQYVKT-HSAQKWADDFMSELNDIIVE 481 (797)
T ss_pred HHHHHHHHHHhhhh-CCHHHHHHHHHHHHHHHhhh
Confidence 88888889998865 99999999999999887643
No 79
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.94 E-value=3.9e-25 Score=214.33 Aligned_cols=340 Identities=11% Similarity=0.095 Sum_probs=216.4
Q ss_pred cccEEEEEeeccCCCch-hHHHHHHHHHHHhCCc---eEEEEe---cCCCCCchhHHHhhhhh----------hhhccee
Q 012132 73 KSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGT---KVNWIT---IQKPSEEDEVIYSLEHK----------MWDRGVQ 135 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~---~V~v~~---~~~~~~~~~~~~~~~~~----------~~~~~~~ 135 (470)
.+||||+++..+ ||| -+.+..|.++|.++|. +|.++- ...+.........+... +....-.
T Consensus 4 ~~~~vlil~~~~--G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~Y~~~~~~~p~~y~~~y~~~~~ 81 (391)
T PRK13608 4 QNKKILIITGSF--GNGHMQVTQSIVNQLNDMNLDHLSVIEHDLFMEAHPILTSICKKWYINSFKYFRNMYKGFYYSRPD 81 (391)
T ss_pred CCceEEEEECCC--CchHHHHHHHHHHHHHhhCCCCceEEEeehHHhcCchHHHHHHHHHHHHHHHhHHHHHHHHHcCch
Confidence 357999999554 555 6889999999988764 455443 11111111010000000 0000000
Q ss_pred e--------EecCChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhccccccccee
Q 012132 136 V--------ISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAM 207 (470)
Q Consensus 136 ~--------~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ 207 (470)
. ........+.++.+||+||++.+... +..+..... ...|++...++.. ... ....+..+.++
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~p~~~--~~~l~~~~~--~~iP~~~v~td~~---~~~--~w~~~~~d~~~ 152 (391)
T PRK13608 82 KLDKCFYKYYGLNKLINLLIKEKPDLILLTFPTPV--MSVLTEQFN--INIPVATVMTDYR---LHK--NWITPYSTRYY 152 (391)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCcCEEEECCcHHH--HHHHHHhcC--CCCCEEEEeCCCC---ccc--ccccCCCCEEE
Confidence 0 01123345566789999999866542 222221111 1235543333321 111 12235567777
Q ss_pred eeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCC-eEEEEEeecccCCCHH
Q 012132 208 IDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED-LLFAIINSVSRGKGQD 286 (470)
Q Consensus 208 ~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~i~~vGrl~~~Kg~~ 286 (470)
+.+....+.+. ..|++.+++.+++|+++..+..... +...++++|+++++ .++++.|++...||++
T Consensus 153 v~s~~~~~~l~-----~~gi~~~ki~v~GiPv~~~f~~~~~--------~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~~ 219 (391)
T PRK13608 153 VATKETKQDFI-----DVGIDPSTVKVTGIPIDNKFETPID--------QKQWLIDNNLDPDKQTILMSAGAFGVSKGFD 219 (391)
T ss_pred ECCHHHHHHHH-----HcCCCHHHEEEECeecChHhccccc--------HHHHHHHcCCCCCCCEEEEECCCcccchhHH
Confidence 77776655554 3478888999988888754322111 34567789997665 4556789999889999
Q ss_pred HHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCC
Q 012132 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQA 366 (470)
Q Consensus 287 ~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~ 366 (470)
.+++++.+ ..+++++++++++.. +..+++++ .++..++|+++|+++++.++|+.||++|.
T Consensus 220 ~li~~~~~----------~~~~~~~vvv~G~~~---~l~~~l~~---~~~~~~~v~~~G~~~~~~~~~~~aDl~I~---- 279 (391)
T PRK13608 220 TMITDILA----------KSANAQVVMICGKSK---ELKRSLTA---KFKSNENVLILGYTKHMNEWMASSQLMIT---- 279 (391)
T ss_pred HHHHHHHh----------cCCCceEEEEcCCCH---HHHHHHHH---HhccCCCeEEEeccchHHHHHHhhhEEEe----
Confidence 99998532 226788876654310 12334443 33445689999999999999999999994
Q ss_pred cccccchHHHHHHhcCCCEEecCC-CCc----ceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 012132 367 WGECFGRITIEAMAFQLPVLGTAA-GGT----TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERV 441 (470)
Q Consensus 367 ~~E~~g~~~lEAma~G~PvI~s~~-~g~----~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 441 (470)
.+.|+++.|||++|+|+|+++. +|. ...+.+.+.|+. .+| .++++++|.++++|++.+++|++++++..
T Consensus 280 --k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~--~~~--~~~l~~~i~~ll~~~~~~~~m~~~~~~~~ 353 (391)
T PRK13608 280 --KPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKI--ADT--PEEAIKIVASLTNGNEQLTNMISTMEQDK 353 (391)
T ss_pred --CCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEE--eCC--HHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 3458899999999999999963 331 112233444544 445 89999999999999999999999999976
Q ss_pred HHHcChhHHHHHHHHHHHHHHH
Q 012132 442 KEIFQEHHMAERIAVVLKEVLK 463 (470)
Q Consensus 442 ~~~fs~~~~~~~~~~~~~~~l~ 463 (470)
.. |+++.+++.+++++.++.+
T Consensus 354 ~~-~s~~~i~~~l~~l~~~~~~ 374 (391)
T PRK13608 354 IK-YATQTICRDLLDLIGHSSQ 374 (391)
T ss_pred CC-CCHHHHHHHHHHHhhhhhh
Confidence 54 9999999999999887654
No 80
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.93 E-value=5.8e-24 Score=220.68 Aligned_cols=294 Identities=16% Similarity=0.149 Sum_probs=199.2
Q ss_pred cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc-------hhhhhcccccccceeeeehhhHHHHHHhh
Q 012132 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF-------KLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
.+-|+|.+|+...... ...++...+. .++.+..|-.++... .....+.+-..+-+-..+......+.+..
T Consensus 132 ~~~d~vwvhDYhl~l~-p~~lr~~~~~--~~igfFlH~pfP~~~~f~~lp~~~~ll~~ll~~Dligf~t~~~~r~Fl~~~ 208 (726)
T PRK14501 132 RPGDVVWVHDYQLMLL-PAMLRERLPD--ARIGFFLHIPFPSFEVFRLLPWREEILEGLLGADLIGFHTYDYVRHFLSSV 208 (726)
T ss_pred CCCCEEEEeCchhhhH-HHHHHhhCCC--CcEEEEeeCCCCChHHHhhCCChHHHHHHHhcCCeEEeCCHHHHHHHHHHH
Confidence 3458999998665443 3334444443 467778886654331 11222223333444344444344433333
Q ss_pred hhhhcc-----------CCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHH
Q 012132 222 RERLRI-----------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLH 290 (470)
Q Consensus 222 ~~~~~~-----------~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~ 290 (470)
.+.++. ...++.++|||||.+.|.+...........+.+|+.+ .++.+|+++||+.+.||++.+++
T Consensus 209 ~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~~il~VgRl~~~Kgi~~~l~ 285 (726)
T PRK14501 209 LRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQDL---RGRKIILSIDRLDYTKGIPRRLL 285 (726)
T ss_pred HHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHHHc---CCCEEEEEecCcccccCHHHHHH
Confidence 333321 2235899999999999987643222222234466654 46778999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCc----eEEEEEeCCCCcChH----HHHHHHHHHHhcC-------CCCcEEEecc--cCCHHHH
Q 012132 291 SFYESLELIKEKKLEVPS----VHAVIIGSDMNAQTK----FESELRNYVMQKK-------IQDRVHFVNK--TLTVAPY 353 (470)
Q Consensus 291 a~~~l~~~l~~~~~~~~~----~~l~ivG~g~~~~~~----~~~~l~~~~~~~~-------l~~~V~~~g~--~~~~~~~ 353 (470)
|++++.+ ++|+ ++|+++|.+.....+ +..++.+++.+.+ ....+.+.|. .+++..+
T Consensus 286 A~~~ll~-------~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~l 358 (726)
T PRK14501 286 AFERFLE-------KNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVAL 358 (726)
T ss_pred HHHHHHH-------hCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHH
Confidence 9999876 3454 789988754222212 3344444443322 1122445565 3899999
Q ss_pred HHhcCEEEEccCCcccccchHHHHHHhcC-----CCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhC-H
Q 012132 354 LAAIDVLVQNSQAWGECFGRITIEAMAFQ-----LPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH-V 427 (470)
Q Consensus 354 ~~~aDv~v~pS~~~~E~~g~~~lEAma~G-----~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~-~ 427 (470)
|+.||++++||. .||||++++|||||| +||++...|+..+++ .|++++|.| +++++++|.+++++ .
T Consensus 359 y~~aDv~v~~S~--~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~----~~llv~P~d--~~~la~ai~~~l~~~~ 430 (726)
T PRK14501 359 YRAADVALVTPL--RDGMNLVAKEYVASRTDGDGVLILSEMAGAAAELA----EALLVNPND--IEGIAAAIKRALEMPE 430 (726)
T ss_pred HHhccEEEeccc--ccccCcccceEEEEcCCCCceEEEecccchhHHhC----cCeEECCCC--HHHHHHHHHHHHcCCH
Confidence 999999999999 999999999999994 567777778888875 389999999 99999999999985 3
Q ss_pred HHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHh
Q 012132 428 ERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 464 (470)
Q Consensus 428 ~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~ 464 (470)
+.+....+++++++. .|||+.+++++++.|+++..+
T Consensus 431 ~e~~~r~~~~~~~v~-~~~~~~w~~~~l~~l~~~~~~ 466 (726)
T PRK14501 431 EEQRERMQAMQERLR-RYDVHKWASDFLDELREAAEK 466 (726)
T ss_pred HHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHhh
Confidence 455566678888884 599999999999999998654
No 81
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.92 E-value=1.8e-23 Score=188.04 Aligned_cols=224 Identities=27% Similarity=0.302 Sum_probs=161.0
Q ss_pred EEEEeeccCC--CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCcEE
Q 012132 77 VLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLI 154 (470)
Q Consensus 77 Il~v~~~~~~--~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV 154 (470)
|+++++...+ ||.+++...+++.|.++||+|++++ ..........+..+||+|
T Consensus 1 i~~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~v~~-------------------------~~~~~~~~~~~~~~~D~i 55 (229)
T cd01635 1 ILLVSTPLLPGGGGVELVLLDLAKALARRGHEVEVVA-------------------------LLLLLLLRILRGFKPDVV 55 (229)
T ss_pred CeeeccccCCCCCCchhHHHHHHHHHHHcCCeEEEEE-------------------------echHHHHHHHhhcCCCEE
Confidence 4666766654 6668999999999999999999998 000112223335799999
Q ss_pred EEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEE
Q 012132 155 VLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYV 234 (470)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~v 234 (470)
|+++............. ....+++++.|+...........
T Consensus 56 ~~~~~~~~~~~~~~~~~---~~~~~~i~~~h~~~~~~~~~~~~------------------------------------- 95 (229)
T cd01635 56 HAHGYYPAPLALLLAAR---LLGIPLVLTVHGVNRSLLEGVPL------------------------------------- 95 (229)
T ss_pred EEcCCCcHHHHHHHHHh---hCCCCEEEEEcCccHhhcccCcH-------------------------------------
Confidence 99987665544311111 12357888999764432211000
Q ss_pred EecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEE
Q 012132 235 VHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII 314 (470)
Q Consensus 235 i~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~iv 314 (470)
...... . ......++|++.+.||++.+++++..+.+ +.++++++++
T Consensus 96 -------~~~~~~------------~--------~~~~~~~~g~~~~~k~~~~~~~a~~~l~~-------~~~~~~~~i~ 141 (229)
T cd01635 96 -------SLLALS------------I--------GLADKVFVGRLAPEKGLDDLIEAFALLKE-------RGPDLKLVIA 141 (229)
T ss_pred -------HHHHHH------------H--------hhcceEEEEeecccCCHHHHHHHHHHHHH-------hCCCeEEEEE
Confidence 000000 0 00011189999999999999999998865 3479999999
Q ss_pred eCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc---CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCC
Q 012132 315 GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT---LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG 391 (470)
Q Consensus 315 G~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~---~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~ 391 (470)
|.+. .....+..+..++..++|.+.|+. +++..+++.||++++||. .|++|++++|||++|+|+|+|+.+
T Consensus 142 G~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~--~e~~~~~~~Eam~~g~pvi~s~~~ 214 (229)
T cd01635 142 GDGP-----EREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSL--REGFGLVVLEAMACGLPVIATDVG 214 (229)
T ss_pred eCCC-----ChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEeccc--ccCcChHHHHHHhCCCCEEEcCCC
Confidence 9983 344455546677888899999983 556666677999999999 899999999999999999999999
Q ss_pred CcceeeecCceeeee
Q 012132 392 GTTEIVVNGTTGLLH 406 (470)
Q Consensus 392 g~~e~v~~~~~G~l~ 406 (470)
+..|++.++++|+++
T Consensus 215 ~~~e~i~~~~~g~~~ 229 (229)
T cd01635 215 GPPEIVEDGLTGLLV 229 (229)
T ss_pred CcceEEECCCceEEC
Confidence 999999999999874
No 82
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.91 E-value=4.1e-23 Score=199.51 Aligned_cols=261 Identities=13% Similarity=0.037 Sum_probs=171.3
Q ss_pred hcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch------hhhhcccccccceeeeehhhHHHHHHhh
Q 012132 148 ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK------LDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 148 ~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~------~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
..+..+++.+.+....+... . ...++++++++....... ......+..++.+++.|....+.+.+
T Consensus 100 ~~~~~i~~~~~P~~~~~~~~-----~--~~~~~Vyd~~D~~~~~~~~~~~~~~~e~~~~~~ad~vi~~S~~l~~~~~~-- 170 (373)
T cd04950 100 GFGRPILWYYTPYTLPVAAL-----L--QASLVVYDCVDDLSAFPGGPPELLEAERRLLKRADLVFTTSPSLYEAKRR-- 170 (373)
T ss_pred CCCCcEEEEeCccHHHHHhh-----c--CCCeEEEEcccchhccCCCCHHHHHHHHHHHHhCCEEEECCHHHHHHHhh--
Confidence 34555666766655443333 1 124678888875543321 12344456777888888777655442
Q ss_pred hhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHh
Q 012132 222 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKE 301 (470)
Q Consensus 222 ~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~ 301 (470)
++ .++.+|+||+|.+.|.+...... ..+.. ...++++++|+|++.+.++++.+.++++
T Consensus 171 ---~~---~~i~~i~ngvd~~~f~~~~~~~~------~~~~~--~~~~~~~i~y~G~l~~~~d~~ll~~la~-------- 228 (373)
T cd04950 171 ---LN---PNVVLVPNGVDYEHFAAARDPPP------PPADL--AALPRPVIGYYGAIAEWLDLELLEALAK-------- 228 (373)
T ss_pred ---CC---CCEEEcccccCHHHhhcccccCC------ChhHH--hcCCCCEEEEEeccccccCHHHHHHHHH--------
Confidence 23 67999999999999876432100 00111 1246689999999999888876655443
Q ss_pred hcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCC---cccccchHHH
Q 012132 302 KKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA---WGECFGRITI 376 (470)
Q Consensus 302 ~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~---~~E~~g~~~l 376 (470)
..|+++|+++|++... ..... +...+||+|+|++ +++..+|+.+|++++|+.. ..+++|++++
T Consensus 229 ---~~p~~~~vliG~~~~~-----~~~~~----~~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~ 296 (373)
T cd04950 229 ---ARPDWSFVLIGPVDVS-----IDPSA----LLRLPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLF 296 (373)
T ss_pred ---HCCCCEEEEECCCcCc-----cChhH----hccCCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHH
Confidence 2389999999997211 11111 1113689999986 8899999999999999862 1246899999
Q ss_pred HHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Q 012132 377 EAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAV 456 (470)
Q Consensus 377 EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~ 456 (470)
||||||+|||+|+.++..+ ... |.++.++| +++++++|.+++.++..... +.+++ +.+.|||++.++++.+
T Consensus 297 EylA~G~PVVat~~~~~~~---~~~-~~~~~~~d--~~~~~~ai~~~l~~~~~~~~--~~~~~-~~~~~sW~~~a~~~~~ 367 (373)
T cd04950 297 EYLAAGKPVVATPLPEVRR---YED-EVVLIADD--PEEFVAAIEKALLEDGPARE--RRRLR-LAAQNSWDARAAEMLE 367 (373)
T ss_pred HHhccCCCEEecCcHHHHh---hcC-cEEEeCCC--HHHHHHHHHHHHhcCCchHH--HHHHH-HHHHCCHHHHHHHHHH
Confidence 9999999999998765544 333 34444556 99999999997654321111 12222 4566999999999986
Q ss_pred HHHH
Q 012132 457 VLKE 460 (470)
Q Consensus 457 ~~~~ 460 (470)
.+.+
T Consensus 368 ~l~~ 371 (373)
T cd04950 368 ALQE 371 (373)
T ss_pred HHHh
Confidence 5544
No 83
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.90 E-value=4.9e-21 Score=185.47 Aligned_cols=290 Identities=13% Similarity=0.092 Sum_probs=203.3
Q ss_pred cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc-------hhhhhcccccccceeeeehhhHHHHHHhh
Q 012132 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF-------KLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
.+-|+|.+|+..... +...++...+. .++.+..|..++..- .....+.+-.++-+-..+...+..+.+..
T Consensus 131 ~~~d~vWVhDYhL~l-lp~~LR~~~~~--~~IgfFlHiPFPs~eifr~LP~r~~ll~glL~aDliGFqt~~y~~~Fl~~~ 207 (487)
T TIGR02398 131 AEGATVWVHDYNLWL-VPGYIRQLRPD--LKIAFFHHTPFPSADVFNILPWREQIIGSLLCCDYIGFHIPRYVENFVDAA 207 (487)
T ss_pred CCCCEEEEecchhhH-HHHHHHHhCCC--CeEEEEeeCCCCChHHHhhCCchHHHHHHHhcCCeEEeCCHHHHHHHHHHH
Confidence 345899999865544 33444444443 467777886554331 11222223333334334444443333333
Q ss_pred hhhhcc--------------------------------CCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCC
Q 012132 222 RERLRI--------------------------------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNE 269 (470)
Q Consensus 222 ~~~~~~--------------------------------~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 269 (470)
.+.++. ..-++.++|.|||.+.|.............+++|++++ +
T Consensus 208 ~r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID~~~f~~~~~~~~~~~~~~~lr~~~~---~ 284 (487)
T TIGR02398 208 RGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTDPERIRSALAAASIREMMERIRSELA---G 284 (487)
T ss_pred HHHhCCccccccccccccccccccccccccccceeECCEEEEEEEEECEecHHHHHHHhcCchHHHHHHHHHHHcC---C
Confidence 222221 11237899999999999765433222334567888887 6
Q ss_pred CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCC----ceEEEEEeCCCCcCh----HHHHHHHHHHHhc------
Q 012132 270 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP----SVHAVIIGSDMNAQT----KFESELRNYVMQK------ 335 (470)
Q Consensus 270 ~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~----~~~l~ivG~g~~~~~----~~~~~l~~~~~~~------ 335 (470)
+.+|+.++|+++.||++..++||+++++ ++| ++.|+++|.+..... ++..++++++.+.
T Consensus 285 ~kiIl~VDRLDy~KGI~~kl~Afe~~L~-------~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~ 357 (487)
T TIGR02398 285 VKLILSAERVDYTKGILEKLNAYERLLE-------RRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFAR 357 (487)
T ss_pred ceEEEEecccccccCHHHHHHHHHHHHH-------hCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCC
Confidence 7889999999999999999999999877 446 479999987643222 2455566666554
Q ss_pred -CCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCC----CEEecCCCCcceeeecCceeeeecC
Q 012132 336 -KIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL----PVLGTAAGGTTEIVVNGTTGLLHPV 408 (470)
Q Consensus 336 -~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~----PvI~s~~~g~~e~v~~~~~G~l~~~ 408 (470)
+..+-+.+.+.. +++..+|+.||+++.||. .||++++..|+|+|+. |+|.|..+|..+.+ ..+++++|
T Consensus 358 ~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~l--rDGmNLVa~Eyva~~~~~~GvLILSefaGaa~~l---~~AllVNP 432 (487)
T TIGR02398 358 IGWTPLQFFTRSLPYEEVSAWFAMADVMWITPL--RDGLNLVAKEYVAAQGLLDGVLVLSEFAGAAVEL---KGALLTNP 432 (487)
T ss_pred CCCccEEEEcCCCCHHHHHHHHHhCCEEEECcc--ccccCcchhhHHhhhcCCCCCEEEeccccchhhc---CCCEEECC
Confidence 444556677764 889999999999999999 9999999999999999 99999999988776 35799999
Q ss_pred CCCChHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Q 012132 409 GKEGITPLAKNIVKLATH-VERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 409 ~d~~~~~la~~i~~ll~~-~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 459 (470)
.| +++++++|.+.++. .+.+++..+..++++.+ ++...+++.+++-+.
T Consensus 433 ~d--~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~-~d~~~W~~~fl~~l~ 481 (487)
T TIGR02398 433 YD--PVRMDETIYVALAMPKAEQQARMREMFDAVNY-YDVQRWADEFLAAVS 481 (487)
T ss_pred CC--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHhh
Confidence 99 99999999999996 44566666667777755 899988888775443
No 84
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.90 E-value=1.1e-20 Score=166.69 Aligned_cols=356 Identities=17% Similarity=0.165 Sum_probs=236.0
Q ss_pred ccEEEEEeeccCCCc-hhHHHHHHHHHHHhCC--ceEEEEecCCCCCchhHHHhhhh----hhhhcceeeEecCCh----
Q 012132 74 SKLVLLVSHELSLSG-GPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEVIYSLEH----KMWDRGVQVISAKGQ---- 142 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G-~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---- 142 (470)
.+.+.|++++...|| ||+++..-.+.+++.- +...|++.+-............+ .+....+.++..+..
T Consensus 43 ~ktvgfFHPYCNAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi~Lk~R~lVe 122 (465)
T KOG1387|consen 43 VKTVGFFHPYCNAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFIYLKLRYLVE 122 (465)
T ss_pred ceEEEEecccccCCCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEEEEEeeeeee
Confidence 467999999888754 5899999999998863 34444444423222222211111 122233444332211
Q ss_pred --------------------hhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeec--ccc---------
Q 012132 143 --------------------ETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR--GHY--------- 191 (470)
Q Consensus 143 --------------------~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--~~~--------- 191 (470)
-...-+..|||.+-....+..+.. ++. + ...|++.++|-.. ...
T Consensus 123 a~~~~hfTllgQaigsmIl~~Eai~r~~Pdi~IDtMGY~fs~p~--~r~-l--~~~~V~aYvHYP~iS~DML~~l~qrq~ 197 (465)
T KOG1387|consen 123 ASTWKHFTLLGQAIGSMILAFEAIIRFPPDIFIDTMGYPFSYPI--FRR-L--RRIPVVAYVHYPTISTDMLKKLFQRQK 197 (465)
T ss_pred cccccceehHHHHHHHHHHHHHHHHhCCchheEecCCCcchhHH--HHH-H--ccCceEEEEecccccHHHHHHHHhhhh
Confidence 011234789998876654433222 221 1 1146777777311 000
Q ss_pred ------chhhhhccc--------ccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHH
Q 012132 192 ------FKLDYVKHL--------PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLR 257 (470)
Q Consensus 192 ------~~~~~~~~~--------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~ 257 (470)
-+..+.+.+ ..++.++++|..+.+...+-. + ..++.+|+++++.+.....
T Consensus 198 s~~l~~~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~nHI~qiW----~--~~~~~iVyPPC~~e~lks~---------- 261 (465)
T KOG1387|consen 198 SGILVWGKLAYWRLFALLYQSAGSKADIVMTNSSWTNNHIKQIW----Q--SNTCSIVYPPCSTEDLKSK---------- 261 (465)
T ss_pred cchhhhHHHHHHHHHHHHHHhccccceEEEecchhhHHHHHHHh----h--ccceeEEcCCCCHHHHHHH----------
Confidence 011111111 234556667776665554422 2 2568899999988854322
Q ss_pred HHHHHHcCC-CCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCc-ChHHHHHHHHHHHhc
Q 012132 258 EHVRESLGV-RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-QTKFESELRNYVMQK 335 (470)
Q Consensus 258 ~~~r~~~~~-~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~-~~~~~~~l~~~~~~~ 335 (470)
.+- ..+...++++|.+.|+|++. +++.++-.....+.. ...++++|+++|+-.++ +.+..+.|+++++++
T Consensus 262 ------~~te~~r~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~~pl~-a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L 333 (465)
T KOG1387|consen 262 ------FGTEGERENQLLSLAQFRPEKNHK-ILQLFALYLKNEPLE-ASVSPIKLIIVGSCRNEEDEERVKSLKDLAEEL 333 (465)
T ss_pred ------hcccCCcceEEEEEeecCcccccH-HHHHHHHHHhcCchh-hccCCceEEEEeccCChhhHHHHHHHHHHHHhc
Confidence 122 24568899999999999999 444443322211110 13467999999986433 335678899999999
Q ss_pred CCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCc-ceeeec---CceeeeecCC
Q 012132 336 KIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT-TEIVVN---GTTGLLHPVG 409 (470)
Q Consensus 336 ~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~-~e~v~~---~~~G~l~~~~ 409 (470)
.++++|.|.-.. +++..+|+.|.+.|...- .|.||+.+.|+||+|+-+|+-+.||. -++|.+ ..+|++++.
T Consensus 334 ~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~Mw--NEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla~t- 410 (465)
T KOG1387|consen 334 KIPKHVQFEKNVPYEKLVELLGKATIGVHTMW--NEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAPT- 410 (465)
T ss_pred CCccceEEEecCCHHHHHHHhccceeehhhhh--hhhcchhHHHHHhcCceEEEeCCCCCceeeeeccCCccceeecCC-
Confidence 999999998765 899999999999999996 99999999999999999999998874 555553 356899853
Q ss_pred CCChHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHhh
Q 012132 410 KEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 465 (470)
Q Consensus 410 d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~~ 465 (470)
.++.+++|.+++. |++.+..|.++||..+ .+|+..+..+.+...+.+++.+.
T Consensus 411 ---~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~-~RFsE~~F~kd~~~~i~kll~e~ 463 (465)
T KOG1387|consen 411 ---DEEYAEAILKIVKLNYDERNMMRRNARKSL-ARFGELKFDKDWENPICKLLEEE 463 (465)
T ss_pred ---hHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHhhHHHHHHhHhHHHHHhhccc
Confidence 6899999999998 6777899999999877 45999999999999999988754
No 85
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.89 E-value=2.6e-21 Score=188.10 Aligned_cols=338 Identities=15% Similarity=0.126 Sum_probs=204.6
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeE--------------ec
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI--------------SA 139 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~ 139 (470)
+|||+++.... ||..+.-.++++|++.++++.++......-.... +...+....+.+. ..
T Consensus 1 ~~ki~i~~Ggt---~G~i~~a~l~~~L~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 74 (380)
T PRK00025 1 PLRIAIVAGEV---SGDLLGAGLIRALKARAPNLEFVGVGGPRMQAAG---CESLFDMEELAVMGLVEVLPRLPRLLKIR 74 (380)
T ss_pred CceEEEEecCc---CHHHHHHHHHHHHHhcCCCcEEEEEccHHHHhCC---CccccCHHHhhhccHHHHHHHHHHHHHHH
Confidence 36898887543 4444444599999998899888874332100000 0000000001110 11
Q ss_pred CChhhHHhhcCCcEEEEcccchh-hhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHH
Q 012132 140 KGQETINTALKADLIVLNTAVAG-KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWK 218 (470)
Q Consensus 140 ~~~~~~~~~~~~DiV~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 218 (470)
...+.+.+..+||+||++..... ..+....+.. ..|++++.+.....+......+..+..+.+++.+....+.+.
T Consensus 75 ~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~----~ip~i~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~ 150 (380)
T PRK00025 75 RRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKA----GIPTIHYVSPSVWAWRQGRAFKIAKATDHVLALFPFEAAFYD 150 (380)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHC----CCCEEEEeCCchhhcCchHHHHHHHHHhhheeCCccCHHHHH
Confidence 12345566789999999863211 1112112111 135555444321111222222334556777777776655544
Q ss_pred HhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEE-EEEe-ecccC-CCHHHHHHHHHHH
Q 012132 219 NRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLF-AIIN-SVSRG-KGQDLFLHSFYES 295 (470)
Q Consensus 219 ~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i-~~vG-rl~~~-Kg~~~ll~a~~~l 295 (470)
.+|.+ +.++.|++...... .. .+...+++++++++.+++ ++.| |.... ++++.++++++.+
T Consensus 151 -----~~g~~---~~~~G~p~~~~~~~-~~-------~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l 214 (380)
T PRK00025 151 -----KLGVP---VTFVGHPLADAIPL-LP-------DRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLL 214 (380)
T ss_pred -----hcCCC---eEEECcCHHHhccc-cc-------ChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Confidence 23432 55555554332111 01 134578889998776654 4444 33333 4578889999877
Q ss_pred HHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhc-CCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchH
Q 012132 296 LELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRI 374 (470)
Q Consensus 296 ~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~-~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~ 374 (470)
.+ +.|+++++++|++. +..+++++.++++ ++. +.+.. .++..+|+.||++|.+| |.+
T Consensus 215 ~~-------~~~~~~~ii~~~~~----~~~~~~~~~~~~~~~~~--v~~~~--~~~~~~~~~aDl~v~~s-------G~~ 272 (380)
T PRK00025 215 QQ-------RYPDLRFVLPLVNP----KRREQIEEALAEYAGLE--VTLLD--GQKREAMAAADAALAAS-------GTV 272 (380)
T ss_pred HH-------hCCCeEEEEecCCh----hhHHHHHHHHhhcCCCC--eEEEc--ccHHHHHHhCCEEEECc-------cHH
Confidence 54 34789999998632 4677788888776 553 55543 58999999999999987 678
Q ss_pred HHHHHhcCCCEEec-----------------CCCCcceeeecCc--eeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHH
Q 012132 375 TIEAMAFQLPVLGT-----------------AAGGTTEIVVNGT--TGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 435 (470)
Q Consensus 375 ~lEAma~G~PvI~s-----------------~~~g~~e~v~~~~--~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~ 435 (470)
.+|||++|+|+|++ +.+++++++.++. .+++.+..| ++++++++.++++|++.+++|++
T Consensus 273 ~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~i~~ll~~~~~~~~~~~ 350 (380)
T PRK00025 273 TLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEAT--PEKLARALLPLLADGARRQALLE 350 (380)
T ss_pred HHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCC--HHHHHHHHHHHhcCHHHHHHHHH
Confidence 88999999999987 4556677776654 345666666 99999999999999999999999
Q ss_pred HHHHHHHHHcChhHHHHHHHHHHHHHHH
Q 012132 436 RGYERVKEIFQEHHMAERIAVVLKEVLK 463 (470)
Q Consensus 436 ~a~~~~~~~fs~~~~~~~~~~~~~~~l~ 463 (470)
++.+.... . ....++++.+.+.+++.
T Consensus 351 ~~~~~~~~-~-~~~a~~~~~~~i~~~~~ 376 (380)
T PRK00025 351 GFTELHQQ-L-RCGADERAAQAVLELLK 376 (380)
T ss_pred HHHHHHHH-h-CCCHHHHHHHHHHHHhh
Confidence 88665544 2 33355666666665554
No 86
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.88 E-value=1.7e-20 Score=181.15 Aligned_cols=316 Identities=16% Similarity=0.118 Sum_probs=189.7
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhC-CceEEEEecCCCCCchhHHHhhhhhhhhccee----eE-ec---------
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ----VI-SA--------- 139 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~--------- 139 (470)
|||++++..-+-- ..+..+.++|.+. +.++.++...... .. ........++. +. ..
T Consensus 1 ~~i~~~~gtr~~~---~~~~p~~~~l~~~~~~~~~~~~tg~h~---~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 71 (365)
T TIGR00236 1 LKVSIVLGTRPEA---IKMAPLIRALKKYPEIDSYVIVTAQHR---EM---LDQVLDLFHLPPDYDLNIMSPGQTLGEIT 71 (365)
T ss_pred CeEEEEEecCHHH---HHHHHHHHHHhhCCCCCEEEEEeCCCH---HH---HHHHHHhcCCCCCeeeecCCCCCCHHHHH
Confidence 5898888533211 4678888999876 5666555532221 11 11112122221 11 00
Q ss_pred ----CChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecc--cc--chhhh-hcccc-cccceeee
Q 012132 140 ----KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG--HY--FKLDY-VKHLP-LVAGAMID 209 (470)
Q Consensus 140 ----~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~--~~--~~~~~-~~~~~-~~~~~~~~ 209 (470)
.....+.+..+||+||+|......+......... ..|++...++... .+ +.... +..+. ..+.+++.
T Consensus 72 ~~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~---~ipv~h~~~g~~s~~~~~~~~~~~~r~~~~~~ad~~~~~ 148 (365)
T TIGR00236 72 SNMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYL---QIPVGHVEAGLRTGDRYSPMPEEINRQLTGHIADLHFAP 148 (365)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHh---CCCEEEEeCCCCcCCCCCCCccHHHHHHHHHHHHhccCC
Confidence 1123455678999999997543322222222111 1344433222211 10 11111 11122 23556666
Q ss_pred ehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeec-ccCCCHHHH
Q 012132 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV-SRGKGQDLF 288 (470)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl-~~~Kg~~~l 288 (470)
+....+.+. +.|++++++.+++||+....+...... .+..++++++. ++.+++++.+|. ...||++.+
T Consensus 149 s~~~~~~l~-----~~G~~~~~I~vign~~~d~~~~~~~~~-----~~~~~~~~~~~-~~~~vl~~~hr~~~~~k~~~~l 217 (365)
T TIGR00236 149 TEQAKDNLL-----RENVKADSIFVTGNTVIDALLTNVEIA-----YSSPVLSEFGE-DKRYILLTLHRRENVGEPLENI 217 (365)
T ss_pred CHHHHHHHH-----HcCCCcccEEEeCChHHHHHHHHHhhc-----cchhHHHhcCC-CCCEEEEecCchhhhhhHHHHH
Confidence 666654443 358888999999999743332221110 12445666763 334555545454 346899999
Q ss_pred HHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCC
Q 012132 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA 366 (470)
Q Consensus 289 l~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~ 366 (470)
++|+.++.+ ++|+++++++|.+.+ ..... +.+.++..++|+|+|.. .++..+++.+|+++.+|
T Consensus 218 l~a~~~l~~-------~~~~~~~vi~~~~~~---~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-- 282 (365)
T TIGR00236 218 FKAIREIVE-------EFEDVQIVYPVHLNP---VVREP---LHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDS-- 282 (365)
T ss_pred HHHHHHHHH-------HCCCCEEEEECCCCh---HHHHH---HHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECC--
Confidence 999998754 347889888865421 12222 33445666789999975 56788899999998776
Q ss_pred cccccchHHHHHHhcCCCEEec-CCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHH
Q 012132 367 WGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRG 437 (470)
Q Consensus 367 ~~E~~g~~~lEAma~G~PvI~s-~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a 437 (470)
|..++|||++|+|||++ +.|+.+|++.++ .+.+++ .| ++++++++.++++|++.+++++++.
T Consensus 283 -----g~~~~EA~a~g~PvI~~~~~~~~~e~~~~g-~~~lv~-~d--~~~i~~ai~~ll~~~~~~~~~~~~~ 345 (365)
T TIGR00236 283 -----GGVQEEAPSLGKPVLVLRDTTERPETVEAG-TNKLVG-TD--KENITKAAKRLLTDPDEYKKMSNAS 345 (365)
T ss_pred -----hhHHHHHHHcCCCEEECCCCCCChHHHhcC-ceEEeC-CC--HHHHHHHHHHHHhChHHHHHhhhcC
Confidence 44589999999999996 678888888755 555664 55 9999999999999999888887665
No 87
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=2.9e-19 Score=171.44 Aligned_cols=203 Identities=30% Similarity=0.456 Sum_probs=170.6
Q ss_pred ceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCC--eEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCc
Q 012132 231 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED--LLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 308 (470)
Q Consensus 231 ~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~--~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~ 308 (470)
++.+++|+++.+.+... ..++..+. ..++++||+.+.||++.+++++..+.+ ..++
T Consensus 173 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~-------~~~~ 230 (381)
T COG0438 173 KIVVIPNGIDTEKFAPA---------------RIGLLPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKK-------RGPD 230 (381)
T ss_pred CceEecCCcCHHHcCcc---------------ccCCCcccCceEEEEeeccChhcCHHHHHHHHHHhhh-------hcCC
Confidence 68999999999987542 11222333 789999999999999999999998865 2244
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccC--CHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEE
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~--~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (470)
..++++|.+... ...+...+++++..++|.|+|... ++..+++.+|++++||. .|+||++++|||++|+|||
T Consensus 231 ~~~~~~g~~~~~----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~--~e~~~~~~~Ea~a~g~pvi 304 (381)
T COG0438 231 IKLVIVGDGPER----REELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSL--SEGFGLVLLEAMAAGTPVI 304 (381)
T ss_pred eEEEEEcCCCcc----HHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccc--cccchHHHHHHHhcCCcEE
Confidence 899999998421 356666888888778999999864 78888999999999999 7999999999999999999
Q ss_pred ecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH
Q 012132 387 GTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 463 (470)
Q Consensus 387 ~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~ 463 (470)
+++.++..|++.++.+|+++...| .+++++++..++++.+.++.+++.+++.+.+.|+|+.+++++.+++.....
T Consensus 305 ~~~~~~~~e~~~~~~~g~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (381)
T COG0438 305 ASDVGGIPEVVEDGETGLLVPPGD--VEELADALEQLLEDPELREELGEAARERVEEEFSWERIAEQLLELYEELLA 379 (381)
T ss_pred ECCCCChHHHhcCCCceEecCCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 999999999998877788777766 999999999999998888888887777776889999999999999988764
No 88
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.86 E-value=5.1e-20 Score=178.02 Aligned_cols=330 Identities=17% Similarity=0.124 Sum_probs=198.7
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHHHhC-CceEEEEecCCCC-CchhHHHhhhhhhhhcc--eeeEec------------
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPS-EEDEVIYSLEHKMWDRG--VQVISA------------ 139 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L~~~-G~~V~v~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~------------ 139 (470)
||++++..-+-. ..+.-+.++|++. |+++.++...... ....... .+.....+ +.....
T Consensus 1 ~i~~~~gtr~~~---~~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 75 (363)
T cd03786 1 KILVVTGTRPEY---IKLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTF--FEILFIIKPDYDLLLGSDSQSLGAQTAG 75 (363)
T ss_pred CEEEEEecCHHH---HHHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHH--HHhhCCCCCCEEEecCCCCCCHHHHHHH
Confidence 577777432211 3577788899887 8999976643221 1111111 11101111 111100
Q ss_pred --CChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecc---ccchhhhhc-ccccccceeeeehhh
Q 012132 140 --KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG---HYFKLDYVK-HLPLVAGAMIDSHVT 213 (470)
Q Consensus 140 --~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~---~~~~~~~~~-~~~~~~~~~~~s~~~ 213 (470)
..........+||+||+|......+......... ..|++...|+... ......... .....+.+++.+...
T Consensus 76 ~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~---~iPvv~~~~g~~s~~~~~~~~~~r~~~~~~ad~~~~~s~~~ 152 (363)
T cd03786 76 LLIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFKL---GIPVAHVEAGLRSFDRGMPDEENRHAIDKLSDLHFAPTEEA 152 (363)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHc---CCCEEEEecccccCCCCCCchHHHHHHHHHhhhccCCCHHH
Confidence 0112334557999999996443322222222111 1355554443221 010111111 123445566666665
Q ss_pred HHHHHHhhhhhhccCCCceEEEecCC-chhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeeccc---CCCHHHHH
Q 012132 214 AEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR---GKGQDLFL 289 (470)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~i~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~---~Kg~~~ll 289 (470)
.+.+. +.|++.+++.+++|++ |...+...... ....++.++++++++++++.||... .||++.++
T Consensus 153 ~~~l~-----~~G~~~~kI~vign~v~d~~~~~~~~~~------~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~ 221 (363)
T cd03786 153 RRNLL-----QEGEPPERIFVVGNTMIDALLRLLELAK------KELILELLGLLPKKYILVTLHRVENVDDGEQLEEIL 221 (363)
T ss_pred HHHHH-----HcCCCcccEEEECchHHHHHHHHHHhhc------cchhhhhcccCCCCEEEEEeCCccccCChHHHHHHH
Confidence 55443 5688999999999996 43332221110 1223467788777788888999864 79999999
Q ss_pred HHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCC-CCcEEEecc--cCCHHHHHHhcCEEEEccCC
Q 012132 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI-QDRVHFVNK--TLTVAPYLAAIDVLVQNSQA 366 (470)
Q Consensus 290 ~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l-~~~V~~~g~--~~~~~~~~~~aDv~v~pS~~ 366 (470)
+|++++.+ .++.+++.|++ +..+.+++.+.++++ .++|+|+|. .+++..+|+.||++|.+|-
T Consensus 222 ~al~~l~~---------~~~~vi~~~~~-----~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg- 286 (363)
T cd03786 222 EALAELAE---------EDVPVVFPNHP-----RTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG- 286 (363)
T ss_pred HHHHHHHh---------cCCEEEEECCC-----ChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc-
Confidence 99988743 35666666665 467888888888876 678999975 3789999999999999983
Q ss_pred cccccchHHHHHHhcCCCEEecCC-CCcceeeecCceeeeecCC-CCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 012132 367 WGECFGRITIEAMAFQLPVLGTAA-GGTTEIVVNGTTGLLHPVG-KEGITPLAKNIVKLATHVERRLTMGKRGYERVKEI 444 (470)
Q Consensus 367 ~~E~~g~~~lEAma~G~PvI~s~~-~g~~e~v~~~~~G~l~~~~-d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 444 (470)
| +..|||++|+|+|+++. +..++.+.+ |..+..+ | +++++++|.++++++..+..|. ...
T Consensus 287 -----g-i~~Ea~~~g~PvI~~~~~~~~~~~~~~---g~~~~~~~~--~~~i~~~i~~ll~~~~~~~~~~-------~~~ 348 (363)
T cd03786 287 -----G-IQEEASFLGVPVLNLRDRTERPETVES---GTNVLVGTD--PEAILAAIEKLLSDEFAYSLMS-------INP 348 (363)
T ss_pred -----c-HHhhhhhcCCCEEeeCCCCccchhhhe---eeEEecCCC--HHHHHHHHHHHhcCchhhhcCC-------CCC
Confidence 3 47899999999999974 446666644 4444333 4 8999999999999987766653 122
Q ss_pred cChhHHHHHHHHH
Q 012132 445 FQEHHMAERIAVV 457 (470)
Q Consensus 445 fs~~~~~~~~~~~ 457 (470)
|.-.+.++++.++
T Consensus 349 ~~~~~a~~~I~~~ 361 (363)
T cd03786 349 YGDGNASERIVEI 361 (363)
T ss_pred CCCCHHHHHHHHH
Confidence 4444455555443
No 89
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.86 E-value=6.4e-20 Score=174.11 Aligned_cols=282 Identities=10% Similarity=0.067 Sum_probs=186.7
Q ss_pred CCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCC-cEEEEcccchhh-
Q 012132 86 LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA-DLIVLNTAVAGK- 163 (470)
Q Consensus 86 ~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-DiV~~~~~~~~~- 163 (470)
..|+...-.++.+.+.+.|+++.-+...+..... ....... ...+....++ |+||+++|....
T Consensus 14 ~~a~~ka~~d~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~-------------~~~~~~~~~~~Dvv~~~~P~~~~~ 78 (333)
T PRK09814 14 NSAALKAKNDVTKIAKQLGFEELGIYFYNIKRDS--LSERSKR-------------LDGILASLKPGDIVIFQFPTWNGF 78 (333)
T ss_pred cchHHHHHHHHHHHHHHCCCeEeEEEecccccch--HHHHHHH-------------HHHHHhcCCCCCEEEEECCCCchH
Confidence 4667888899999999999988666532211100 0000000 1123334556 999999876432
Q ss_pred hH-HHHhhhcCCccccceeeEEeeeccccch------hhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEe
Q 012132 164 WL-DAVLKEDVPRVLPNVLWWIHEMRGHYFK------LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVH 236 (470)
Q Consensus 164 ~~-~~~~~~~~~~~~~~~~~~~h~~~~~~~~------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ 236 (470)
.. ..++. .+.+...+++.++|+....... ......++.++.+++.|..+.+.+. ..|++..++.+++
T Consensus 79 ~~~~~~~~-~~k~~~~k~i~~ihD~~~~~~~~~~~~~~~~~~~~~~aD~iI~~S~~~~~~l~-----~~g~~~~~i~~~~ 152 (333)
T PRK09814 79 EFDRLFVD-KLKKKQVKIIILIHDIEPLRFDSNYYLMKEEIDMLNLADVLIVHSKKMKDRLV-----EEGLTTDKIIVQG 152 (333)
T ss_pred HHHHHHHH-HHHHcCCEEEEEECCcHHHhccccchhhHHHHHHHHhCCEEEECCHHHHHHHH-----HcCCCcCceEecc
Confidence 11 22221 1122246899999997754322 2234456778889999998877765 3466667787777
Q ss_pred cCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeC
Q 012132 237 LGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 316 (470)
Q Consensus 237 ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~ 316 (470)
+..+.....+ +. .+.....++|+|++...+++ +. ..++++|+|+|+
T Consensus 153 ~~~~~~~~~~--------------~~---~~~~~~~i~yaG~l~k~~~l----~~-------------~~~~~~l~i~G~ 198 (333)
T PRK09814 153 IFDYLNDIEL--------------VK---TPSFQKKINFAGNLEKSPFL----KN-------------WSQGIKLTVFGP 198 (333)
T ss_pred cccccccccc--------------cc---cccCCceEEEecChhhchHH----Hh-------------cCCCCeEEEECC
Confidence 6554321110 00 11345689999999843221 11 126799999999
Q ss_pred CCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCC---------cccccchHHHHHHhcCCCE
Q 012132 317 DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA---------WGECFGRITIEAMAFQLPV 385 (470)
Q Consensus 317 g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~---------~~E~~g~~~lEAma~G~Pv 385 (470)
|. ... ...++|+|+|+. +++..+|+. |+.+.+... ..-++|.++.|+||||+||
T Consensus 199 g~-----~~~---------~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PV 263 (333)
T PRK09814 199 NP-----EDL---------ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPV 263 (333)
T ss_pred Cc-----ccc---------ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCE
Confidence 84 221 234689999985 788889988 766654320 0135788999999999999
Q ss_pred EecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 012132 386 LGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE 443 (470)
Q Consensus 386 I~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~ 443 (470)
|+++.++..++|.++.+|++++ + .++++++|..+ +++.+.+|++++++.+..
T Consensus 264 I~~~~~~~~~~V~~~~~G~~v~--~--~~el~~~l~~~--~~~~~~~m~~n~~~~~~~ 315 (333)
T PRK09814 264 IVWSKAAIADFIVENGLGFVVD--S--LEELPEIIDNI--TEEEYQEMVENVKKISKL 315 (333)
T ss_pred EECCCccHHHHHHhCCceEEeC--C--HHHHHHHHHhc--CHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 4 78999999986 456788999999987754
No 90
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.83 E-value=1.5e-18 Score=178.68 Aligned_cols=293 Identities=15% Similarity=0.152 Sum_probs=199.1
Q ss_pred CCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc-------hhhhhcccccccceeeeehhhHHHHHHhhh
Q 012132 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF-------KLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (470)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (470)
.-|+|.+|+....+ +..+++...+. .++.+..|..++..- .....+.+-.++-+-..+......+.....
T Consensus 231 ~gD~VWVHDYHL~L-lP~~LR~~~p~--~~IGfFlHiPFPs~Eifr~LP~r~elL~glL~aDlIGFqT~~y~rhFl~~c~ 307 (934)
T PLN03064 231 EGDVVWCHDYHLMF-LPKCLKEYNSN--MKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACT 307 (934)
T ss_pred CCCEEEEecchhhH-HHHHHHHhCCC--CcEEEEecCCCCChHHHhhCCcHHHHHHHHhcCCeEEeCCHHHHHHHHHHHH
Confidence 45799999865443 34445544544 467778886554331 112223333344444444444444444333
Q ss_pred hhhccC-----------CCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHH
Q 012132 223 ERLRIK-----------MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 291 (470)
Q Consensus 223 ~~~~~~-----------~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a 291 (470)
+.++.. .-++.++|-|||.+.|.............+++|++++ ++.+|+.++|+.+.||+...+.|
T Consensus 308 rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~~---g~kiIlgVDRLD~~KGI~~kL~A 384 (934)
T PLN03064 308 RILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELKERFA---GRKVMLGVDRLDMIKGIPQKILA 384 (934)
T ss_pred HHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHhC---CceEEEEeeccccccCHHHHHHH
Confidence 333321 1236788999999999865433333334567888875 56789999999999999999999
Q ss_pred HHHHHHHHHhhcccCCceE--EEEE--eCCCCcChHHHHHHH----HHHHhc----CCCC--cEEEecc---cCCHHHHH
Q 012132 292 FYESLELIKEKKLEVPSVH--AVII--GSDMNAQTKFESELR----NYVMQK----KIQD--RVHFVNK---TLTVAPYL 354 (470)
Q Consensus 292 ~~~l~~~l~~~~~~~~~~~--l~iv--G~g~~~~~~~~~~l~----~~~~~~----~l~~--~V~~~g~---~~~~~~~~ 354 (470)
|+++++ ++|+++ ++++ ......+.+..++++ +++.+. |-.+ -|+++.. .+++..+|
T Consensus 385 fE~fL~-------~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY 457 (934)
T PLN03064 385 FEKFLE-------ENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALY 457 (934)
T ss_pred HHHHHH-------hCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHH
Confidence 999876 446543 3443 322211113334443 433332 2111 1555443 28899999
Q ss_pred HhcCEEEEccCCcccccchHHHHHHhcCC----CEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHh-CHHH
Q 012132 355 AAIDVLVQNSQAWGECFGRITIEAMAFQL----PVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVER 429 (470)
Q Consensus 355 ~~aDv~v~pS~~~~E~~g~~~lEAma~G~----PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~ 429 (470)
+.||++++||. .||++++..|||+|+. ++|.|..+|..+.+ +..+++++|.| +++++++|.+.+. +++.
T Consensus 458 ~~ADV~lvTsl--rDGmNLva~Eyva~~~~~~GvLILSEfaGaa~~L--~~~AllVNP~D--~~~vA~AI~~AL~M~~~E 531 (934)
T PLN03064 458 AVTDVALVTSL--RDGMNLVSYEFVACQDSKKGVLILSEFAGAAQSL--GAGAILVNPWN--ITEVAASIAQALNMPEEE 531 (934)
T ss_pred HhCCEEEeCcc--ccccCchHHHHHHhhcCCCCCeEEeCCCchHHHh--CCceEEECCCC--HHHHHHHHHHHHhCCHHH
Confidence 99999999999 9999999999999954 55559988888877 45689999999 9999999999998 7888
Q ss_pred HHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Q 012132 430 RLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 462 (470)
Q Consensus 430 ~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l 462 (470)
++.+.+..++++.. +++..+++.+++-+.+..
T Consensus 532 r~~r~~~~~~~V~~-~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 532 REKRHRHNFMHVTT-HTAQEWAETFVSELNDTV 563 (934)
T ss_pred HHHHHHHHHhhccc-CCHHHHHHHHHHHHHHHH
Confidence 99999999999865 999999999888777664
No 91
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.79 E-value=2.3e-17 Score=164.92 Aligned_cols=186 Identities=14% Similarity=0.161 Sum_probs=147.7
Q ss_pred CCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcCh---HHHHHHHHHHHhcCCCCcEE
Q 012132 266 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT---KFESELRNYVMQKKIQDRVH 342 (470)
Q Consensus 266 ~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~---~~~~~l~~~~~~~~l~~~V~ 342 (470)
++++.+.+++++|+..+||++++++++.++.+.+.+. ..++++++.|.+.+.+. .+.+.+.+++++...+++|.
T Consensus 385 ~dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~---~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~ 461 (601)
T TIGR02094 385 LDPDVLTIGFARRFATYKRADLIFRDLERLARILNNP---ERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIV 461 (601)
T ss_pred cCCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCC---CCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEE
Confidence 4467789999999999999999999999887644321 13689999999865421 25667777777644667888
Q ss_pred Eec-ccCCHHH-HHHhcCEEEE-ccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecC-----------
Q 012132 343 FVN-KTLTVAP-YLAAIDVLVQ-NSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPV----------- 408 (470)
Q Consensus 343 ~~g-~~~~~~~-~~~~aDv~v~-pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~----------- 408 (470)
|+- +...++. ++++||++++ ||+. .|++|++-+-||..|.+.+++--|...|.. ++.||+.+..
T Consensus 462 f~~~Yd~~lA~~i~aG~Dv~L~~Psr~-~EacGtsqMka~~nGgL~~sv~DG~~~E~~-~~~nGf~f~~~~~~~~~~~~d 539 (601)
T TIGR02094 462 FLENYDINLARYLVSGVDVWLNNPRRP-LEASGTSGMKAAMNGVLNLSILDGWWGEGY-DGDNGWAIGDGEEYDDEEEQD 539 (601)
T ss_pred EEcCCCHHHHHHHhhhheeEEeCCCCC-cCCchHHHHHHHHcCCceeecccCcccccC-CCCcEEEECCCcccccccccc
Confidence 764 5555554 5899999999 9984 899999999999999999999888888876 6789999984
Q ss_pred -CCCChHHHHHHHHHHH-----hC-----HHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Q 012132 409 -GKEGITPLAKNIVKLA-----TH-----VERRLTMGKRGYERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 409 -~d~~~~~la~~i~~ll-----~~-----~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 458 (470)
.| .++|.++|++.+ ++ |..+.++.+++.+.....|||++++++|.+.|
T Consensus 540 ~~d--a~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 540 RLD--AEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred CCC--HHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 44 899999997655 23 45688888888876656799999999999987
No 92
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.79 E-value=5.5e-17 Score=156.54 Aligned_cols=328 Identities=16% Similarity=0.110 Sum_probs=190.0
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHH---Hhhhhhhhhcce-eeE--------ecCCh
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVI---YSLEHKMWDRGV-QVI--------SAKGQ 142 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~--------~~~~~ 142 (470)
.||++.+... ||..+--.++++|+++|+++.++...++.-..... +.+ ..+.-.|+ ..+ .....
T Consensus 6 ~ki~i~aGgt---sGhi~paal~~~l~~~~~~~~~~g~gg~~m~~~g~~~~~~~-~~l~v~G~~~~l~~~~~~~~~~~~~ 81 (385)
T TIGR00215 6 PTIALVAGEA---SGDILGAGLRQQLKEHYPNARFIGVAGPRMAAEGCEVLYSM-EELSVMGLREVLGRLGRLLKIRKEV 81 (385)
T ss_pred CeEEEEeCCc---cHHHHHHHHHHHHHhcCCCcEEEEEccHHHHhCcCccccCh-HHhhhccHHHHHHHHHHHHHHHHHH
Confidence 3666665332 44455559999999999999998854321000000 000 00000111 000 01122
Q ss_pred hhHHhhcCCcEEEEcccchhhhHH-HHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhh
Q 012132 143 ETINTALKADLIVLNTAVAGKWLD-AVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 143 ~~~~~~~~~DiV~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
..+.++.+||+|++++.....+.. ...+. ...|+++++.-....|-...-+...+..+.+++.+....+.+.+
T Consensus 82 ~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~----~gip~v~~i~P~~waw~~~~~r~l~~~~d~v~~~~~~e~~~~~~-- 155 (385)
T TIGR00215 82 VQLAKQAKPDLLVGIDAPDFNLTKELKKKD----PGIKIIYYISPQVWAWRKWRAKKIEKATDFLLAILPFEKAFYQK-- 155 (385)
T ss_pred HHHHHhcCCCEEEEeCCCCccHHHHHHHhh----CCCCEEEEeCCcHhhcCcchHHHHHHHHhHhhccCCCcHHHHHh--
Confidence 355567899999999853323222 12211 12455543321111111222222234556667766666555442
Q ss_pred hhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEE-e-eccc-CCCHHHHHHHHHHHHHH
Q 012132 222 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII-N-SVSR-GKGQDLFLHSFYESLEL 298 (470)
Q Consensus 222 ~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~v-G-rl~~-~Kg~~~ll~a~~~l~~~ 298 (470)
.+ .+..++.|++........+ .+...|+++|++++.++|+++ | |..+ .|+++.++++++.+.+
T Consensus 156 ---~g---~~~~~vGnPv~~~~~~~~~-------~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~- 221 (385)
T TIGR00215 156 ---KN---VPCRFVGHPLLDAIPLYKP-------DRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQ- 221 (385)
T ss_pred ---cC---CCEEEECCchhhhccccCC-------CHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHH-
Confidence 22 2466788887443221101 134568889998887766655 3 6655 6899999999988754
Q ss_pred HHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHH
Q 012132 299 IKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEA 378 (470)
Q Consensus 299 l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEA 378 (470)
+.|++++++.+.+. ...+.+++..+.++...+|.+.+. ++..+|++||++|.+| |.+.+|+
T Consensus 222 ------~~p~~~~vi~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~l~aADl~V~~S-------Gt~tlEa 282 (385)
T TIGR00215 222 ------QEPDLRRVLPVVNF----KRRLQFEQIKAEYGPDLQLHLIDG--DARKAMFAADAALLAS-------GTAALEA 282 (385)
T ss_pred ------hCCCeEEEEEeCCc----hhHHHHHHHHHHhCCCCcEEEECc--hHHHHHHhCCEEeecC-------CHHHHHH
Confidence 44888887765432 345666777777766666776653 6778999999999998 5677799
Q ss_pred HhcCCCEEecC-CC----------------CcceeeecCceeeeecCCCCChHHHHHHHHHHHhCH----HHHHHHHHHH
Q 012132 379 MAFQLPVLGTA-AG----------------GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV----ERRLTMGKRG 437 (470)
Q Consensus 379 ma~G~PvI~s~-~~----------------g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~----~~~~~~~~~a 437 (470)
|++|+|+|... .. +.+.++.+.+....+..++.+++.+++.+.++++|+ +.++++.+..
T Consensus 283 ~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~ 362 (385)
T TIGR00215 283 ALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFF 362 (385)
T ss_pred HHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 99999998872 11 122223333222223333445899999999999999 8887776655
Q ss_pred HHHHHHHcC
Q 012132 438 YERVKEIFQ 446 (470)
Q Consensus 438 ~~~~~~~fs 446 (470)
.+ +.+...
T Consensus 363 ~~-~~~~l~ 370 (385)
T TIGR00215 363 EE-LRQRIY 370 (385)
T ss_pred HH-HHHHhc
Confidence 44 334344
No 93
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.79 E-value=2.4e-17 Score=162.89 Aligned_cols=218 Identities=12% Similarity=0.134 Sum_probs=170.8
Q ss_pred ccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEe-
Q 012132 199 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN- 277 (470)
Q Consensus 199 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vG- 277 (470)
.+...+.+++.+....+.+..++... . ...++..||.+.- ... +.... ..+..+++++
T Consensus 269 ~~~~~d~iIv~T~~q~~~l~~~~~~~-~-~~~~v~~Ip~~~~-~~~-~~~s~-----------------r~~~~~I~v~i 327 (519)
T TIGR03713 269 SLSRADLIIVDREDIERLLEENYREN-Y-VEFDISRITPFDT-RLR-LGQSQ-----------------QLYETEIGFWI 327 (519)
T ss_pred ChhhcCeEEEcCHHHHHHHHHHhhhc-c-cCCcceeeCccce-EEe-cChhh-----------------cccceEEEEEc
Confidence 34556667776666555555544321 1 2234667775543 211 11000 1234566778
Q ss_pred -ecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCC------------------
Q 012132 278 -SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ------------------ 338 (470)
Q Consensus 278 -rl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~------------------ 338 (470)
|+ +.|.++.+++++.++.+ ++|+++|.+.|.+.+. .+.+.++++++++++.
T Consensus 328 drL-~ek~~~~~I~av~~~~~-------~~p~~~L~~~gy~~~~--~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 397 (519)
T TIGR03713 328 DGL-SDEELQQILQQLLQYIL-------KNPDYELKILTYNNDN--DITQLLEDILEQINEEYNQDKNFFSLSEQDENQP 397 (519)
T ss_pred CCC-ChHHHHHHHHHHHHHHh-------hCCCeEEEEEEecCch--hHHHHHHHHHHHHHhhhchhhhccccchhhhhhh
Confidence 99 99999999999999876 6799999999987431 3567788888887766
Q ss_pred -----------CcEEEecccC--CHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeee
Q 012132 339 -----------DRVHFVNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLL 405 (470)
Q Consensus 339 -----------~~V~~~g~~~--~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l 405 (470)
++|.|.|... ++.+.|+.+.++|.+|. .|+|+ +.+||++.|+|+| .-|..++|.++.||++
T Consensus 398 ~~~~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~--~eg~~-~~ieAiS~GiPqI---nyg~~~~V~d~~NG~l 471 (519)
T TIGR03713 398 ILQTDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSK--EPDLY-TQISGISAGIPQI---NKVETDYVEHNKNGYI 471 (519)
T ss_pred cccchhhcccccEEEEEecCCHHHHHHHHhhheEEEECCC--CCChH-HHHHHHHcCCCee---ecCCceeeEcCCCcEE
Confidence 7999999886 99999999999999999 99999 9999999999999 4567999999999999
Q ss_pred ecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Q 012132 406 HPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 406 ~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 458 (470)
+ +| ..+|+++|..++.+++.+.++...+++.+.+ ||-+++.++|.+++
T Consensus 472 i--~d--~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~-yS~~~i~~kW~~~~ 519 (519)
T TIGR03713 472 I--DD--ISELLKALDYYLDNLKNWNYSLAYSIKLIDD-YSSENIIERLNELI 519 (519)
T ss_pred e--CC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhhC
Confidence 9 56 9999999999999999999999999999854 99999999998753
No 94
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.7e-15 Score=134.28 Aligned_cols=352 Identities=16% Similarity=0.150 Sum_probs=226.3
Q ss_pred cccEEEEEe-eccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC----------
Q 012132 73 KSKLVLLVS-HELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG---------- 141 (470)
Q Consensus 73 ~~~kIl~v~-~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 141 (470)
++++++++. .+. |-+-++..=|..|++.|++|.++....+.+. ++.+....+.++....
T Consensus 11 ~k~ra~vvVLGDv---GRSPRMqYHA~Sla~~gf~VdliGy~~s~p~-------e~l~~hprI~ih~m~~l~~~~~~p~~ 80 (444)
T KOG2941|consen 11 KKKRAIVVVLGDV---GRSPRMQYHALSLAKLGFQVDLIGYVESIPL-------EELLNHPRIRIHGMPNLPFLQGGPRV 80 (444)
T ss_pred ccceEEEEEeccc---CCChHHHHHHHHHHHcCCeEEEEEecCCCCh-------HHHhcCCceEEEeCCCCcccCCCchh
Confidence 345555444 333 3345566678999999999999985554322 3333344444443221
Q ss_pred --------------hhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccc-cchh---------hhh
Q 012132 142 --------------QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH-YFKL---------DYV 197 (470)
Q Consensus 142 --------------~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~-~~~~---------~~~ 197 (470)
.+.+.....+|++.+++|.....+.......+- ...+++..+|++... ..+. ...
T Consensus 81 ~~l~lKvf~Qfl~Ll~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l-~~~KfiIDWHNy~Ysl~l~~~~g~~h~lV~l~ 159 (444)
T KOG2941|consen 81 LFLPLKVFWQFLSLLWALFVLRPPDIILVQNPPSIPTLIVCVLYSIL-TGAKFIIDWHNYGYSLQLKLKLGFQHPLVRLV 159 (444)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCcEEEEeCCCCCchHHHHHHHHHH-hcceEEEEehhhHHHHHHHhhcCCCCchHHHH
Confidence 112233588999999987643333222211111 225788888876432 1000 001
Q ss_pred ccc-----ccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCc---------hhhhhHhhh---------HHHHH
Q 012132 198 KHL-----PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNS---------KELMEVAED---------NVAKR 254 (470)
Q Consensus 198 ~~~-----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd---------~~~~~~~~~---------~~~~~ 254 (470)
+.+ +.++...+++.++. +.+.+..|+. +..|++.-.. .+.|.+... +..+.
T Consensus 160 ~~~E~~fgk~a~~nLcVT~AMr----~dL~qnWgi~--ra~v~YDrPps~~~~l~~~H~lf~~l~~d~~~f~ar~~q~~~ 233 (444)
T KOG2941|consen 160 RWLEKYFGKLADYNLCVTKAMR----EDLIQNWGIN--RAKVLYDRPPSKPTPLDEQHELFMKLAGDHSPFRAREPQDKA 233 (444)
T ss_pred HHHHHHhhcccccchhhHHHHH----HHHHHhcCCc--eeEEEecCCCCCCCchhHHHHHHhhhccccchhhhcccccch
Confidence 111 23344455555554 4444566654 3455553322 112332211 11112
Q ss_pred HHHHHHHHHcC------CCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHH
Q 012132 255 VLREHVRESLG------VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESEL 328 (470)
Q Consensus 255 ~~~~~~r~~~~------~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l 328 (470)
.++..+-++.. .++.+.+++.....++..++..+++|+..--+.+.+.+...|++-.+|.|.| |..+.+
T Consensus 234 ~~~taf~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKG-----PlkE~Y 308 (444)
T KOG2941|consen 234 LERTAFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKG-----PLKEKY 308 (444)
T ss_pred hhhhhHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCC-----chhHHH
Confidence 22333333332 2344567777778899999999999998655555555556799999999999 789999
Q ss_pred HHHHHhcCCCCcEEEec-c--cCCHHHHHHhcCEEE--EccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCcee
Q 012132 329 RNYVMQKKIQDRVHFVN-K--TLTVAPYLAAIDVLV--QNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTG 403 (470)
Q Consensus 329 ~~~~~~~~l~~~V~~~g-~--~~~~~~~~~~aDv~v--~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G 403 (470)
.+.++++++. +|.+.- + .+|.+.+++.||+.| .+|.. .=..|++++....||+||++-+..-+.|+|.+++||
T Consensus 309 ~~~I~~~~~~-~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSS-GLDLPMKVVDMFGcglPvcA~~fkcl~ELVkh~eNG 386 (444)
T KOG2941|consen 309 SQEIHEKNLQ-HVQVCTPWLEAEDYPKLLASADLGVCLHTSSS-GLDLPMKVVDMFGCGLPVCAVNFKCLDELVKHGENG 386 (444)
T ss_pred HHHHHHhccc-ceeeeecccccccchhHhhccccceEeeecCc-ccCcchhHHHhhcCCCceeeecchhHHHHHhcCCCc
Confidence 9999999886 565543 3 489999999999866 45542 556799999999999999999999999999999999
Q ss_pred eeecCCCCChHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHHcChhHHHHHH
Q 012132 404 LLHPVGKEGITPLAKNIVKLAT----HVERRLTMGKRGYERVKEIFQEHHMAERI 454 (470)
Q Consensus 404 ~l~~~~d~~~~~la~~i~~ll~----~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 454 (470)
+++.. .++|++.+..+.+ +.+...++.+++++. +...|+..-++.
T Consensus 387 lvF~D----s~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~--~e~RW~~~W~~~ 435 (444)
T KOG2941|consen 387 LVFED----SEELAEQLQMLFKNFPDNADELNQLKKNLREE--QELRWDESWERT 435 (444)
T ss_pred eEecc----HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH--HhhhHHHHHHHh
Confidence 99984 7999999999999 788889999998886 335666554443
No 95
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.76 E-value=1.5e-18 Score=142.56 Aligned_cols=133 Identities=26% Similarity=0.330 Sum_probs=97.4
Q ss_pred CeEEEEEeecccCCCHHHHHH-HHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccC
Q 012132 270 DLLFAIINSVSRGKGQDLFLH-SFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348 (470)
Q Consensus 270 ~~~i~~vGrl~~~Kg~~~ll~-a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~ 348 (470)
-++++++|++.+.|+++.+++ ++.++.+ +.|+++|.|+|.++ . +++++ ..++|+++|+.+
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~-------~~p~~~l~i~G~~~-----~--~l~~~-----~~~~v~~~g~~~ 62 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKE-------KHPDIELIIIGNGP-----D--ELKRL-----RRPNVRFHGFVE 62 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHH-------HSTTEEEEEECESS--------HHCCH-----HHCTEEEE-S-H
T ss_pred cccccccccccccccccchhhhHHHHHHH-------HCcCEEEEEEeCCH-----H--HHHHh-----cCCCEEEcCCHH
Confidence 367899999999999999999 9988866 55899999999973 2 24444 125899999988
Q ss_pred CHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 349 ~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
++.++++.+|+++.|+.. .+++|.+++|||++|+|||+++. +..+++.....|.++ .++ +++++++|.++++|
T Consensus 63 e~~~~l~~~dv~l~p~~~-~~~~~~k~~e~~~~G~pvi~~~~-~~~~~~~~~~~~~~~-~~~--~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 63 ELPEILAAADVGLIPSRF-NEGFPNKLLEAMAAGKPVIASDN-GAEGIVEEDGCGVLV-AND--PEELAEAIERLLND 135 (135)
T ss_dssp HHHHHHHC-SEEEE-BSS--SCC-HHHHHHHCTT--EEEEHH-HCHCHS---SEEEE--TT---HHHHHHHHHHHHH-
T ss_pred HHHHHHHhCCEEEEEeeC-CCcCcHHHHHHHHhCCCEEECCc-chhhheeecCCeEEE-CCC--HHHHHHHHHHHhcC
Confidence 999999999999999963 67999999999999999999998 566666555677777 666 99999999999875
No 96
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.69 E-value=6.4e-15 Score=149.98 Aligned_cols=189 Identities=15% Similarity=0.150 Sum_probs=148.4
Q ss_pred CCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChH---HHHHHHHHHHhcCCCCcEE
Q 012132 266 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK---FESELRNYVMQKKIQDRVH 342 (470)
Q Consensus 266 ~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~---~~~~l~~~~~~~~l~~~V~ 342 (470)
++++.+.|+++.|+..+|+.++++..+.++.+.+.+. ...++++++|.+.+.+.+ +.+.+.+++++....++|.
T Consensus 474 ldpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~---~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVv 550 (778)
T cd04299 474 LDPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDP---ERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIV 550 (778)
T ss_pred cCCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCC---CCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEE
Confidence 4467789999999999999999999999987755431 135999999998765432 3445556666545567888
Q ss_pred Eec-ccCCHHH-HHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCC----------
Q 012132 343 FVN-KTLTVAP-YLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGK---------- 410 (470)
Q Consensus 343 ~~g-~~~~~~~-~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d---------- 410 (470)
|+. +...++. +++.+|++++||+...|++|++-+-||..|.+-+++--|...|.. ++.||+.+....
T Consensus 551 fle~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~-~g~nGwaig~~~~~~~~~~~d~ 629 (778)
T cd04299 551 FLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGY-DGENGWAIGDGDEYEDDEYQDA 629 (778)
T ss_pred EEcCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCcccccc-CCCCceEeCCCccccChhhcch
Confidence 875 5555555 579999999999866899999999999999999999989888887 789999998832
Q ss_pred CChHHHHHHHHHHHh----C------HHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Q 012132 411 EGITPLAKNIVKLAT----H------VERRLTMGKRGYERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 411 ~~~~~la~~i~~ll~----~------~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 458 (470)
.+.++|.+.|++-+- + |..+.+|.+++.+.+...|||++|+++|.+-|
T Consensus 630 ~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~ 687 (778)
T cd04299 630 EEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERF 687 (778)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh
Confidence 236777777755333 3 66788898988888777899999999998644
No 97
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.61 E-value=6.4e-13 Score=129.61 Aligned_cols=296 Identities=17% Similarity=0.134 Sum_probs=176.4
Q ss_pred cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc-------chhhhhcccccccceeeeehhhHHHHHHhh
Q 012132 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
.+-|+|.+|+...... ...++...+. .++.+..|..++.. ......+.+-.++.+-..+......+....
T Consensus 140 ~~~D~VWVhDYhL~ll-P~~LR~~~~~--~~IgfFlHiPFPs~e~fr~lP~r~eiL~glL~aDlIgFqt~~~~~nFl~~~ 216 (474)
T PF00982_consen 140 RPGDLVWVHDYHLMLL-PQMLRERGPD--ARIGFFLHIPFPSSEIFRCLPWREEILRGLLGADLIGFQTFEYARNFLSCC 216 (474)
T ss_dssp -TT-EEEEESGGGTTH-HHHHHHTT----SEEEEEE-S----HHHHTTSTTHHHHHHHHTTSSEEEESSHHHHHHHHHHH
T ss_pred cCCCEEEEeCCcHHHH-HHHHHhhcCC--ceEeeEEecCCCCHHHHhhCCcHHHHHHHhhcCCEEEEecHHHHHHHHHHH
Confidence 4678999998765543 3455555554 57888888765433 112233333444555555555555555554
Q ss_pred hhhhccC-------------CCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHH
Q 012132 222 RERLRIK-------------MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 288 (470)
Q Consensus 222 ~~~~~~~-------------~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~l 288 (470)
.+.+|.. .-++.+.|-|||.+.+........-....++++++++ .+..+|+.+.|++..||+..=
T Consensus 217 ~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~~--~~~~ii~gvDrld~~kGi~~k 294 (474)
T PF00982_consen 217 KRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKFK--GKRKIIVGVDRLDYTKGIPEK 294 (474)
T ss_dssp HHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHTT--T-SEEEEEE--B-GGG-HHHH
T ss_pred HHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhcC--CCcEEEEEeccchhhcCHHHH
Confidence 4444331 1237889999999998765443333334567788775 335788899999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChH----HHHHHHHHHHh----cCCCC--cEEEecc---cCCHHHHHH
Q 012132 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK----FESELRNYVMQ----KKIQD--RVHFVNK---TLTVAPYLA 355 (470)
Q Consensus 289 l~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~----~~~~l~~~~~~----~~l~~--~V~~~g~---~~~~~~~~~ 355 (470)
+.||+++.+..++. ..++.|+-++.......+ +..++.+++.+ +|-.+ .|.++.. .+++..+|+
T Consensus 295 l~Afe~fL~~~P~~---~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~ 371 (474)
T PF00982_consen 295 LRAFERFLERYPEY---RGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYR 371 (474)
T ss_dssp HHHHHHHHHH-GGG---TTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHH
T ss_pred HHHHHHHHHhCcCc---cCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHH
Confidence 99999998866552 256888877764333223 44555555543 33222 2566553 388999999
Q ss_pred hcCEEEEccCCcccccchHHHHHHhcCCC----EEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHh-CHHHH
Q 012132 356 AIDVLVQNSQAWGECFGRITIEAMAFQLP----VLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERR 430 (470)
Q Consensus 356 ~aDv~v~pS~~~~E~~g~~~lEAma~G~P----vI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~ 430 (470)
.||+++.+|. .+|+-++..|+.+|..+ +|.|...|..+.+. +..++++|.| ++++|++|.+.++ .++.+
T Consensus 372 ~aDv~lvTsl--rDGmNLva~Eyva~q~~~~GvLiLSefaGaa~~L~--~~al~VNP~d--~~~~A~ai~~AL~M~~~Er 445 (474)
T PF00982_consen 372 AADVALVTSL--RDGMNLVAKEYVACQDDNPGVLILSEFAGAAEQLS--EAALLVNPWD--IEEVADAIHEALTMPPEER 445 (474)
T ss_dssp H-SEEEE--S--SBS--HHHHHHHHHS-TS--EEEEETTBGGGGT-T--TS-EEE-TT---HHHHHHHHHHHHT--HHHH
T ss_pred hhhhEEecch--hhccCCcceEEEEEecCCCCceEeeccCCHHHHcC--CccEEECCCC--hHHHHHHHHHHHcCCHHHH
Confidence 9999999999 99999999999999876 77888888888773 3459999999 9999999999999 45667
Q ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHH
Q 012132 431 LTMGKRGYERVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 431 ~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 459 (470)
+..-+..++++.+ ++...+++.+++-++
T Consensus 446 ~~r~~~~~~~v~~-~~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 446 KERHARLREYVRE-HDVQWWAESFLRDLK 473 (474)
T ss_dssp HHHHHHHHHHHHH-T-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHh-CCHHHHHHHHHHHhh
Confidence 7777777887755 888888888776554
No 98
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.61 E-value=6.7e-13 Score=126.37 Aligned_cols=313 Identities=14% Similarity=0.105 Sum_probs=173.4
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEec-----C---------
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA-----K--------- 140 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--------- 140 (470)
+||++.+. ..||.-.-...++++|.++||+|.+++...+.+.. .+...|+.+... .
T Consensus 2 ~~i~~~~G--GTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~--------l~~~~g~~~~~~~~~~l~~~~~~~~~~ 71 (352)
T PRK12446 2 KKIVFTGG--GSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKT--------IIEKENIPYYSISSGKLRRYFDLKNIK 71 (352)
T ss_pred CeEEEEcC--CcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccc--------cCcccCCcEEEEeccCcCCCchHHHHH
Confidence 45666552 22333455788999999999999999865543211 111222222111 1
Q ss_pred ----------ChhhHHhhcCCcEEEEcccchhhhHHHHhh-hcCCccccceeeEEeeeccccchhhhhcccccccceeee
Q 012132 141 ----------GQETINTALKADLIVLNTAVAGKWLDAVLK-EDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID 209 (470)
Q Consensus 141 ----------~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 209 (470)
....+.++.+||+||++....+.....+.. .+ .|++ +|+..... ...-+...++.+.++..
T Consensus 72 ~~~~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~-----~p~~--i~e~n~~~-g~~nr~~~~~a~~v~~~ 143 (352)
T PRK12446 72 DPFLVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNR-----VPVL--LHESDMTP-GLANKIALRFASKIFVT 143 (352)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcC-----CCEE--EECCCCCc-cHHHHHHHHhhCEEEEE
Confidence 012345679999999987655432222221 12 2333 34432211 11111112233333322
Q ss_pred ehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHH
Q 012132 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (470)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll 289 (470)
.... ..+++.+++.++.|++..+..... ++..++.+++++++++++.+|.- .|-..+-
T Consensus 144 f~~~----------~~~~~~~k~~~tG~Pvr~~~~~~~---------~~~~~~~~~l~~~~~~iLv~GGS---~Ga~~in 201 (352)
T PRK12446 144 FEEA----------AKHLPKEKVIYTGSPVREEVLKGN---------REKGLAFLGFSRKKPVITIMGGS---LGAKKIN 201 (352)
T ss_pred ccch----------hhhCCCCCeEEECCcCCccccccc---------chHHHHhcCCCCCCcEEEEECCc---cchHHHH
Confidence 2111 112345678888888877654221 23456678887777777666632 3344444
Q ss_pred HHHHHHHHHHHhhcccCCceEEEE-EeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc-CCHHHHHHhcCEEEEccCCc
Q 012132 290 HSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNSQAW 367 (470)
Q Consensus 290 ~a~~~l~~~l~~~~~~~~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~-~~~~~~~~~aDv~v~pS~~~ 367 (470)
+++.++...+. .++++++ +|.. .+.+.+.. . +++...++. +++.++|+.||++|.
T Consensus 202 ~~~~~~l~~l~------~~~~vv~~~G~~-----~~~~~~~~----~---~~~~~~~f~~~~m~~~~~~adlvIs----- 258 (352)
T PRK12446 202 ETVREALPELL------LKYQIVHLCGKG-----NLDDSLQN----K---EGYRQFEYVHGELPDILAITDFVIS----- 258 (352)
T ss_pred HHHHHHHHhhc------cCcEEEEEeCCc-----hHHHHHhh----c---CCcEEecchhhhHHHHHHhCCEEEE-----
Confidence 44444333221 2355554 4443 22222221 1 244556776 789999999999994
Q ss_pred ccccchHHHHHHhcCCCEEecCCCC---------cceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012132 368 GECFGRITIEAMAFQLPVLGTAAGG---------TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGY 438 (470)
Q Consensus 368 ~E~~g~~~lEAma~G~PvI~s~~~g---------~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~ 438 (470)
-+-+.++.|++++|+|.|...... ..+.+.+.+.|..+...+.+++.+.+++.++++|++.+++ ++
T Consensus 259 -r~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~~~~---~~- 333 (352)
T PRK12446 259 -RAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEKYKT---AL- 333 (352)
T ss_pred -CCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHHHHH---HH-
Confidence 445889999999999999885431 1223434556666665555589999999999988765432 22
Q ss_pred HHHHHHcChhHHHHHHHHHHH
Q 012132 439 ERVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 439 ~~~~~~fs~~~~~~~~~~~~~ 459 (470)
+.+.....++++.+++.
T Consensus 334 ----~~~~~~~aa~~i~~~i~ 350 (352)
T PRK12446 334 ----KKYNGKEAIQTIIDHIS 350 (352)
T ss_pred ----HHcCCCCHHHHHHHHHH
Confidence 22555566666655543
No 99
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.59 E-value=5e-12 Score=118.96 Aligned_cols=310 Identities=16% Similarity=0.099 Sum_probs=184.5
Q ss_pred CchhHHHHHHHHHHHhCCce-EEEEecCCCCCchhHHHhhhhhhhhcceeeEe--cC----------------------C
Q 012132 87 SGGPLLLMELAFLLRGVGTK-VNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS--AK----------------------G 141 (470)
Q Consensus 87 ~G~~~~~~~l~~~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----------------------~ 141 (470)
||.-.....++++|.++|++ |.++......+.. .....++.+.. .. .
T Consensus 11 GGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~--------l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (357)
T COG0707 11 GGHVFPALALAEELAKRGWEQVIVLGTGDGLEAF--------LVKQYGIEFELIPSGGLRRKGSLKLLKAPFKLLKGVLQ 82 (357)
T ss_pred ccchhHHHHHHHHHHhhCccEEEEecccccceee--------eccccCceEEEEecccccccCcHHHHHHHHHHHHHHHH
Confidence 34357789999999999995 6665332222111 00111222211 10 1
Q ss_pred hhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhh
Q 012132 142 QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 142 ~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
.+.+.++.+||+|+............+... . ..|++.+..+...+.... .+......+..+....
T Consensus 83 a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~-~---~iPv~ihEqn~~~G~ank----~~~~~a~~V~~~f~~~------- 147 (357)
T COG0707 83 ARKILKKLKPDVVIGTGGYVSGPVGIAAKL-L---GIPVIIHEQNAVPGLANK----ILSKFAKKVASAFPKL------- 147 (357)
T ss_pred HHHHHHHcCCCEEEecCCccccHHHHHHHh-C---CCCEEEEecCCCcchhHH----HhHHhhceeeeccccc-------
Confidence 234567799999999775543332222221 1 135554444433322211 1112222222222210
Q ss_pred hhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHh
Q 012132 222 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKE 301 (470)
Q Consensus 222 ~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~ 301 (470)
.-+.+.+++.+..|++..+.+. .+. ...+.... .++++|+++|. ..|...+-+++.++...+.
T Consensus 148 --~~~~~~~~~~~tG~Pvr~~~~~-~~~--------~~~~~~~~--~~~~~ilV~GG---S~Ga~~ln~~v~~~~~~l~- 210 (357)
T COG0707 148 --EAGVKPENVVVTGIPVRPEFEE-LPA--------AEVRKDGR--LDKKTILVTGG---SQGAKALNDLVPEALAKLA- 210 (357)
T ss_pred --cccCCCCceEEecCcccHHhhc-cch--------hhhhhhcc--CCCcEEEEECC---cchhHHHHHHHHHHHHHhh-
Confidence 2234556789999999888775 221 11222211 26666766663 3455556666655554332
Q ss_pred hcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhc
Q 012132 302 KKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAF 381 (470)
Q Consensus 302 ~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~ 381 (470)
.+++++...+. ...+++++...+++. +.+.++.++|..+|++||++| .-+-++++.|..++
T Consensus 211 -----~~~~v~~~~G~-----~~~~~~~~~~~~~~~---~~v~~f~~dm~~~~~~ADLvI------sRaGa~Ti~E~~a~ 271 (357)
T COG0707 211 -----NRIQVIHQTGK-----NDLEELKSAYNELGV---VRVLPFIDDMAALLAAADLVI------SRAGALTIAELLAL 271 (357)
T ss_pred -----hCeEEEEEcCc-----chHHHHHHHHhhcCc---EEEeeHHhhHHHHHHhccEEE------eCCcccHHHHHHHh
Confidence 24666555443 135566666665554 889999999999999999999 34457999999999
Q ss_pred CCCEEecCCCCc--------ceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHH
Q 012132 382 QLPVLGTAAGGT--------TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAER 453 (470)
Q Consensus 382 G~PvI~s~~~g~--------~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~ 453 (470)
|+|+|--..+.. ...+.+...|.+++..+.+++.+.+.|.+++++++..+.|.+++++.. -...+++
T Consensus 272 g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~-----~p~aa~~ 346 (357)
T COG0707 272 GVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKLG-----KPDAAER 346 (357)
T ss_pred CCCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----CCCHHHH
Confidence 999997765432 223445667888887776789999999999999999999999888743 3344555
Q ss_pred HHHHHHH
Q 012132 454 IAVVLKE 460 (470)
Q Consensus 454 ~~~~~~~ 460 (470)
+.+....
T Consensus 347 i~~~~~~ 353 (357)
T COG0707 347 IADLLLA 353 (357)
T ss_pred HHHHHHH
Confidence 5554444
No 100
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.58 E-value=6.1e-13 Score=128.52 Aligned_cols=255 Identities=18% Similarity=0.202 Sum_probs=140.7
Q ss_pred cccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHH-HHHHHHHH----HHHHc----CCC-CCCe
Q 012132 202 LVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNV-AKRVLREH----VRESL----GVR-NEDL 271 (470)
Q Consensus 202 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~-~~~~~~~~----~r~~~----~~~-~~~~ 271 (470)
.++.+.++|..++.....- ++-.+ =.|+|||++.+.|....+-. .....|+. ++..+ .++ ++.+
T Consensus 221 ~AdvFTTVSeITa~Ea~~L----L~r~p--DvV~pNGl~v~~~~~~~efqnl~~~~k~ki~~fv~~~f~g~~dfd~d~tl 294 (633)
T PF05693_consen 221 YADVFTTVSEITAKEAEHL----LKRKP--DVVTPNGLNVDKFPALHEFQNLHAKAKEKIHEFVRGHFYGHYDFDLDKTL 294 (633)
T ss_dssp HSSEEEESSHHHHHHHHHH----HSS----SEE----B-GGGTSSTTHHHHHHHHHHHHHHHHHHHHSTT---S-GGGEE
T ss_pred hcCeeeehhhhHHHHHHHH----hCCCC--CEEcCCCccccccccchHHHHHHHHHHHHHHHHHHHHhcccCCCCccceE
Confidence 4566777777776554432 23222 37889999998766543211 11111222 23332 333 3457
Q ss_pred EEEEEeecc-cCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcC-----------------------------
Q 012132 272 LFAIINSVS-RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ----------------------------- 321 (470)
Q Consensus 272 ~i~~vGrl~-~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~----------------------------- 321 (470)
+|...||.+ ..||+|.+|||+++|...++..+.+..=+-|+|+-.....-
T Consensus 295 ~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~~ve~l~~~a~~~~l~~t~~~i~~~~g~~~ 374 (633)
T PF05693_consen 295 YFFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSFNVESLKGQAVTKQLRDTVDEIQEKIGKRL 374 (633)
T ss_dssp EEEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeeceeeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCcCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899996 48999999999999987776643222223444433221000
Q ss_pred -----------------hH----------------------------HHHHHHHHHHhcCCC----Cc--EEEecc----
Q 012132 322 -----------------TK----------------------------FESELRNYVMQKKIQ----DR--VHFVNK---- 346 (470)
Q Consensus 322 -----------------~~----------------------------~~~~l~~~~~~~~l~----~~--V~~~g~---- 346 (470)
+. ..+.+-..++++++. ++ |+|++.
T Consensus 375 ~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~irr~~L~N~~~drVKVIF~P~yL~~ 454 (633)
T PF05693_consen 375 FESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNMIRRLGLFNNPEDRVKVIFHPEYLSG 454 (633)
T ss_dssp HHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHHHHHTT----TT-SEEEEE--S---T
T ss_pred HHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHHHHhCCCCCCCCCceEEEEeeccccC
Confidence 00 012223333344442 23 556552
Q ss_pred -----cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeee----c-Cceeeee-cCCCCChHH
Q 012132 347 -----TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVV----N-GTTGLLH-PVGKEGITP 415 (470)
Q Consensus 347 -----~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~----~-~~~G~l~-~~~d~~~~~ 415 (470)
.-+..+++..+|+.|+||. +|++|.+.+|+.++|+|.|+|+..|..-.+. + ...|+.+ +-.+.+.++
T Consensus 455 ~dgif~l~Y~dfv~GcdLgvFPSY--YEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e 532 (633)
T PF05693_consen 455 TDGIFNLDYYDFVRGCDLGVFPSY--YEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRDKNYDE 532 (633)
T ss_dssp TSSSS-S-HHHHHHHSSEEEE--S--SBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-HHH
T ss_pred CCCCCCCCHHHHhccCceeeeccc--cccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCCCCHHH
Confidence 1567899999999999999 9999999999999999999999888543332 1 3345543 444434444
Q ss_pred ----HHHHHHHHHh-CHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHhh
Q 012132 416 ----LAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 465 (470)
Q Consensus 416 ----la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~~ 465 (470)
+++.|..+.. ++..+..+..++.+ ..+.++|+++...|.+.|..++++.
T Consensus 533 ~v~~la~~l~~f~~~~~rqri~~Rn~ae~-LS~~~dW~~~~~yY~~Ay~~AL~~a 586 (633)
T PF05693_consen 533 SVNQLADFLYKFCQLSRRQRIIQRNRAER-LSDLADWKNFGKYYEKAYDLALRRA 586 (633)
T ss_dssp HHHHHHHHHHHHHT--HHHHHHHHHHHHH-HGGGGBHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 4555555544 45555666555544 5567999999999999999988754
No 101
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=99.57 E-value=1.7e-12 Score=124.88 Aligned_cols=296 Identities=11% Similarity=0.049 Sum_probs=197.5
Q ss_pred cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc-------hhhhhcccccccceeeeehhhHHHHHHhh
Q 012132 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF-------KLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
.+-|+|.+|+...... ...++...+. .++.+..|..++..- .....+.+-.++-+-..+......+.+..
T Consensus 122 ~~~D~VWVHDYhL~ll-p~~LR~~~~~--~~IgFFlHiPFPs~eifr~LP~r~eil~glL~aDlIGFqt~~y~rnFl~~~ 198 (474)
T PRK10117 122 KDDDIIWIHDYHLLPF-ASELRKRGVN--NRIGFFLHIPFPTPEIFNALPPHDELLEQLCDYDLLGFQTENDRLAFLDCL 198 (474)
T ss_pred CCCCEEEEeccHhhHH-HHHHHHhCCC--CcEEEEEeCCCCChHHHhhCCChHHHHHHHHhCccceeCCHHHHHHHHHHH
Confidence 3458999998655443 3334444443 467788886554321 11222222233333333333333333322
Q ss_pred hhhhcc------------CCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHH
Q 012132 222 RERLRI------------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (470)
Q Consensus 222 ~~~~~~------------~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll 289 (470)
.+.++. ..-++.+.|-|||.+.|........ ....+++|++++ ++.+|+.+.|++..||+..=+
T Consensus 199 ~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~~~-~~~~~~lr~~~~---~~~lilgVDRLDytKGi~~rl 274 (474)
T PRK10117 199 SNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAGPL-PPKLAQLKAELK---NVQNIFSVERLDYSKGLPERF 274 (474)
T ss_pred HHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhchH-HHHHHHHHHHcC---CCeEEEEecccccccCHHHHH
Confidence 222221 1124788999999999876543222 223456777775 567788899999999999999
Q ss_pred HHHHHHHHHHHhhcccCCceEEEEEeCCCCcChH----HHHHHHHHHHhc----CCCC--cEEEecc---cCCHHHHHHh
Q 012132 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK----FESELRNYVMQK----KIQD--RVHFVNK---TLTVAPYLAA 356 (470)
Q Consensus 290 ~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~----~~~~l~~~~~~~----~l~~--~V~~~g~---~~~~~~~~~~ 356 (470)
.||+++++..++. ..++.|+-+....-...+ +..++++++.+. |-.+ -|+++.. .+++..+|+.
T Consensus 275 ~Afe~fL~~~Pe~---~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ 351 (474)
T PRK10117 275 LAYEALLEKYPQH---HGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRY 351 (474)
T ss_pred HHHHHHHHhChhh---cCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHh
Confidence 9999998855542 246777766653322212 344455555442 2222 2555543 2788999999
Q ss_pred cCEEEEccCCcccccchHHHHHHhcCC-----CEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhC-HHHH
Q 012132 357 IDVLVQNSQAWGECFGRITIEAMAFQL-----PVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH-VERR 430 (470)
Q Consensus 357 aDv~v~pS~~~~E~~g~~~lEAma~G~-----PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~-~~~~ 430 (470)
||+++.++. .+|+-++..|+.||.. ++|.|...|..+.+. ..++++|.| .++++++|.+.++. ++.+
T Consensus 352 ADv~lVTpl--RDGMNLVAkEyva~q~~~~~GvLILSefAGaA~~L~---~AllVNP~d--~~~~A~Ai~~AL~Mp~~Er 424 (474)
T PRK10117 352 SDVGLVTPL--RDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT---SALIVNPYD--RDEVAAALDRALTMPLAER 424 (474)
T ss_pred ccEEEeccc--ccccccccchheeeecCCCCccEEEecccchHHHhC---CCeEECCCC--HHHHHHHHHHHHcCCHHHH
Confidence 999999999 9999999999999976 388898888888773 379999999 99999999999994 5666
Q ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Q 012132 431 LTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 462 (470)
Q Consensus 431 ~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l 462 (470)
++..+..++.+.+ ++...+++.+++-+.++-
T Consensus 425 ~~R~~~l~~~v~~-~dv~~W~~~fL~~L~~~~ 455 (474)
T PRK10117 425 ISRHAEMLDVIVK-NDINHWQECFISDLKQIV 455 (474)
T ss_pred HHHHHHHHHHhhh-CCHHHHHHHHHHHHHHhh
Confidence 6666777777755 899999999988777764
No 102
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.55 E-value=2.2e-14 Score=108.83 Aligned_cols=92 Identities=27% Similarity=0.263 Sum_probs=85.8
Q ss_pred EEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012132 359 VLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGY 438 (470)
Q Consensus 359 v~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~ 438 (470)
+++.|+. .++++..++|+||||+|+|+++.++..+++.++..++.++ | ++++.+++..+++|++.+++++++++
T Consensus 1 i~Ln~~~--~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~--~--~~el~~~i~~ll~~~~~~~~ia~~a~ 74 (92)
T PF13524_consen 1 INLNPSR--SDGPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITYN--D--PEELAEKIEYLLENPEERRRIAKNAR 74 (92)
T ss_pred CEeeCCC--CCCCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEEC--C--HHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 4677888 8999999999999999999999999999999988899988 5 99999999999999999999999999
Q ss_pred HHHHHHcChhHHHHHHHH
Q 012132 439 ERVKEIFQEHHMAERIAV 456 (470)
Q Consensus 439 ~~~~~~fs~~~~~~~~~~ 456 (470)
+++.++|+|++.++++++
T Consensus 75 ~~v~~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 75 ERVLKRHTWEHRAEQILE 92 (92)
T ss_pred HHHHHhCCHHHHHHHHHC
Confidence 999999999999998863
No 103
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=99.47 E-value=6.8e-11 Score=123.32 Aligned_cols=296 Identities=10% Similarity=0.051 Sum_probs=196.4
Q ss_pred cEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc-------chhhhhcccccccceeeeehhhHHHHHHhhhhh
Q 012132 152 DLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRER 224 (470)
Q Consensus 152 DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 224 (470)
|+|.+|+...... ...++...+. .++.+..|..++.. +.....+.+-.++-+-......+..+..-..+.
T Consensus 203 d~VWVhDYhL~ll-P~~LR~~~~~--~~IgfFlHiPFPs~eifr~LP~r~eiL~glL~aDlIGFht~~yar~Fl~~~~r~ 279 (854)
T PLN02205 203 DFVWIHDYHLMVL-PTFLRKRFNR--VKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRM 279 (854)
T ss_pred CEEEEeCchhhHH-HHHHHhhCCC--CcEEEEecCCCCChHHHhhCCcHHHHHHHHhcCCeEEecCHHHHHHHHHHHHHH
Confidence 8999998765443 3444444544 46778888765433 112223333344444444444444444433333
Q ss_pred hccC---------------CCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHH
Q 012132 225 LRIK---------------MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (470)
Q Consensus 225 ~~~~---------------~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll 289 (470)
+|.. .-++.+.|-|||.+.|.............++++++++- .++.+|+.+.|++..||+..=+
T Consensus 280 lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ilgVDrlD~~KGi~~kl 358 (854)
T PLN02205 280 LGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEAKVKELIKQFCD-QDRIMLLGVDDMDIFKGISLKL 358 (854)
T ss_pred hCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhHHHHHHHHHHHhcc-CCCEEEEEccCcccccCHHHHH
Confidence 3322 22477899999999987654332223335667777752 3567888999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCceEEEEEeCCCCcChH----HHHHHHHHHHh----cCCCC--cEEEecc---cCCHHHHHHh
Q 012132 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK----FESELRNYVMQ----KKIQD--RVHFVNK---TLTVAPYLAA 356 (470)
Q Consensus 290 ~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~----~~~~l~~~~~~----~~l~~--~V~~~g~---~~~~~~~~~~ 356 (470)
.||+++++..++. ..++.|+-+........+ +..++.+++.+ +|-.+ .|+++.. .+++..+|+.
T Consensus 359 ~A~e~~L~~~P~~---~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ 435 (854)
T PLN02205 359 LAMEQLLMQHPEW---QGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVV 435 (854)
T ss_pred HHHHHHHHhCccc---cCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHh
Confidence 9999998744331 134567766643222212 33444455543 23221 3666653 2789999999
Q ss_pred cCEEEEccCCcccccchHHHHHHhcCC-------------------CEEecCCCCcceeeecCceeeeecCCCCChHHHH
Q 012132 357 IDVLVQNSQAWGECFGRITIEAMAFQL-------------------PVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLA 417 (470)
Q Consensus 357 aDv~v~pS~~~~E~~g~~~lEAma~G~-------------------PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la 417 (470)
||+++.++. .+|+-++..|+.+|.. .+|.|...|....+. ..++++|.| +++++
T Consensus 436 ADv~lVT~l--RDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L~---~Ai~VNP~d--~~~~a 508 (854)
T PLN02205 436 AECCLVTAV--RDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSLS---GAIRVNPWN--IDAVA 508 (854)
T ss_pred ccEEEeccc--cccccccchheeEEccCccccccccccccccCCCCceEeeeccchhHHhC---cCeEECCCC--HHHHH
Confidence 999999999 9999999999999864 377777777666662 369999999 99999
Q ss_pred HHHHHHHhC-HHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Q 012132 418 KNIVKLATH-VERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 462 (470)
Q Consensus 418 ~~i~~ll~~-~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l 462 (470)
++|.+.++. ++.++..-+..++++.. ++...+++.++.-+++..
T Consensus 509 ~ai~~AL~m~~~Er~~R~~~~~~~v~~-~d~~~W~~~fl~~l~~~~ 553 (854)
T PLN02205 509 DAMDSALEMAEPEKQLRHEKHYRYVST-HDVGYWARSFLQDLERTC 553 (854)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHH
Confidence 999999994 55566666677777754 899999998887776653
No 104
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.46 E-value=1.3e-11 Score=119.47 Aligned_cols=185 Identities=13% Similarity=0.134 Sum_probs=134.4
Q ss_pred ccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecc
Q 012132 201 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 280 (470)
Q Consensus 201 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~ 280 (470)
...+.+++......+.+.+ +++ +..++.++|-|+=.+ +.... ..+..+++++.
T Consensus 238 ~~~~~iIv~T~~q~~di~~----r~~-~~~~~~~ip~g~i~~-~~~~~-------------------r~~~~~l~~t~-- 290 (438)
T TIGR02919 238 TRNKKIIIPNKNEYEKIKE----LLD-NEYQEQISQLGYLYP-FKKDN-------------------KYRKQALILTN-- 290 (438)
T ss_pred cccCeEEeCCHHHHHHHHH----HhC-cccCceEEEEEEEEe-ecccc-------------------CCcccEEEECC--
Confidence 4556666655554444444 333 245677777776522 10000 12233445551
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccC-CHHHHHHhcCE
Q 012132 281 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL-TVAPYLAAIDV 359 (470)
Q Consensus 281 ~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~-~~~~~~~~aDv 359 (470)
+..|++++.|.+ +.|+++|.| |.+. +..+.|.++ .++ ++.+.+.|... ++.++|..||+
T Consensus 291 -----s~~I~~i~~Lv~-------~lPd~~f~I-ga~t----e~s~kL~~L-~~y--~nvvly~~~~~~~l~~ly~~~dl 350 (438)
T TIGR02919 291 -----SDQIEHLEEIVQ-------ALPDYHFHI-AALT----EMSSKLMSL-DKY--DNVKLYPNITTQKIQELYQTCDI 350 (438)
T ss_pred -----HHHHHHHHHHHH-------hCCCcEEEE-EecC----cccHHHHHH-Hhc--CCcEEECCcChHHHHHHHHhccE
Confidence 889999999877 559999999 7764 345788887 666 56777888765 99999999999
Q ss_pred EEEccCCcccccchHHHHHHhcCCCEEecCCC-CcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012132 360 LVQNSQAWGECFGRITIEAMAFQLPVLGTAAG-GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGY 438 (470)
Q Consensus 360 ~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~-g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~ 438 (470)
++..|. .|++++++.||+..|+||++.+.. |..+++.+ |.+++.++ +++|+++|.+++.+++.+++.-+.-+
T Consensus 351 yLdin~--~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~---g~l~~~~~--~~~m~~~i~~lL~d~~~~~~~~~~q~ 423 (438)
T TIGR02919 351 YLDINH--GNEILNAVRRAFEYNLLILGFEETAHNRDFIAS---ENIFEHNE--VDQLISKLKDLLNDPNQFRELLEQQR 423 (438)
T ss_pred EEEccc--cccHHHHHHHHHHcCCcEEEEecccCCcccccC---CceecCCC--HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999 999999999999999999999865 55677754 89999999 99999999999999976665444333
Q ss_pred H
Q 012132 439 E 439 (470)
Q Consensus 439 ~ 439 (470)
+
T Consensus 424 ~ 424 (438)
T TIGR02919 424 E 424 (438)
T ss_pred H
Confidence 3
No 105
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.45 E-value=9.6e-14 Score=119.38 Aligned_cols=158 Identities=13% Similarity=-0.010 Sum_probs=83.7
Q ss_pred EEEEeeccCC-CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHH-Hhhhhhh----hhcceeeEecCChhhHHhhcC
Q 012132 77 VLLVSHELSL-SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVI-YSLEHKM----WDRGVQVISAKGQETINTALK 150 (470)
Q Consensus 77 Il~v~~~~~~-~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 150 (470)
|+++...... ||+++++.+++++|+++||+|++++........... ....... .................++.+
T Consensus 1 ili~~~~~~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (177)
T PF13439_consen 1 ILITNIFLPNIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEELVKIFVKIPYPIRKRFLRSFFFMRRLRRLIKKEK 80 (177)
T ss_dssp -EEECC-TTSSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SSTEEEE---TT-SSTSS--HHHHHHHHHHHHHHHHT
T ss_pred CEEEEecCCCCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhhccceeeeeecccccccchhHHHHHHHHHHHHHcC
Confidence 5666666554 777999999999999999999999965544322110 0000000 000000001112334556679
Q ss_pred CcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccc--------cch-----hhhhcccccccceeeeehhhHHHH
Q 012132 151 ADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH--------YFK-----LDYVKHLPLVAGAMIDSHVTAEYW 217 (470)
Q Consensus 151 ~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~--------~~~-----~~~~~~~~~~~~~~~~s~~~~~~~ 217 (470)
||+||+|......+...... ..+.+++.|+.... ... .......+..+.++++|..+.+.+
T Consensus 81 ~DiVh~~~~~~~~~~~~~~~------~~~~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~vS~~~~~~l 154 (177)
T PF13439_consen 81 PDIVHIHGPPAFWIALLACR------KVPIVYTIHGPYFERRFLKSKLSPYSYLNFRIERKLYKKADRIIAVSESTKDEL 154 (177)
T ss_dssp -SEEECCTTHCCCHHHHHHH------CSCEEEEE-HHH--HHTTTTSCCCHHHHHHCTTHHHHCCSSEEEESSHHHHHHH
T ss_pred CCeEEecccchhHHHHHhcc------CCCEEEEeCCCcccccccccccchhhhhhhhhhhhHHhcCCEEEEECHHHHHHH
Confidence 99999998655443333322 25788999987521 100 111222456778888888886655
Q ss_pred HHhhhhhhccCCCceEEEecCCchhhhh
Q 012132 218 KNRTRERLRIKMPDTYVVHLGNSKELME 245 (470)
Q Consensus 218 ~~~~~~~~~~~~~~i~vi~ngvd~~~~~ 245 (470)
. + +|+++.++.|||||+|.+.|.
T Consensus 155 ~----~-~~~~~~ki~vI~ngid~~~F~ 177 (177)
T PF13439_consen 155 I----K-FGIPPEKIHVIYNGIDTDRFR 177 (177)
T ss_dssp H----H-HT--SS-EEE----B-CCCH-
T ss_pred H----H-hCCcccCCEEEECCccHHHcC
Confidence 5 3 688889999999999999873
No 106
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=2e-10 Score=110.11 Aligned_cols=296 Identities=15% Similarity=0.129 Sum_probs=197.1
Q ss_pred cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc--c-----hhhhhcccccccceeeeehhhHHHHHHhh
Q 012132 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--F-----KLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~--~-----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
.+=|+|.+|+....+ +..+++..++.. ++.+..|-.++.. + ...+...+-.++-+-......+..+....
T Consensus 146 ~~gDiIWVhDYhL~L-~P~mlR~~~~~~--~IgfFlHiPfPssEvfr~lP~r~eIl~gll~~dligFqt~~y~~nF~~~~ 222 (486)
T COG0380 146 EPGDIIWVHDYHLLL-VPQMLRERIPDA--KIGFFLHIPFPSSEVFRCLPWREEILEGLLGADLIGFQTESYARNFLDLC 222 (486)
T ss_pred CCCCEEEEEechhhh-hHHHHHHhCCCc--eEEEEEeCCCCCHHHHhhCchHHHHHHHhhcCCeeEecCHHHHHHHHHHH
Confidence 456999999866544 345566666653 6778888654322 1 11222222233333333444443333333
Q ss_pred hhhhc-------------cCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHH
Q 012132 222 RERLR-------------IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 288 (470)
Q Consensus 222 ~~~~~-------------~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~l 288 (470)
.+..+ -...++..+|-|+|++.|............-.++++.++ .+..+|+.+.|++.-||+..=
T Consensus 223 ~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~el~~~~~--~~~kiivgvDRlDy~kGi~~r 300 (486)
T COG0380 223 SRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKVLELKAELG--RNKKLIVGVDRLDYSKGIPQR 300 (486)
T ss_pred HHhccccccccccccccCCceEEEEEEeeecCHHHHHHhhcCCchhhHHHHHHHHhc--CCceEEEEehhcccccCcHHH
Confidence 22221 122457889999999998766433222233456666665 347888889999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChH----HHHHHHHHHHhc----CCCC--cEEEecc---cCCHHHHHH
Q 012132 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK----FESELRNYVMQK----KIQD--RVHFVNK---TLTVAPYLA 355 (470)
Q Consensus 289 l~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~----~~~~l~~~~~~~----~l~~--~V~~~g~---~~~~~~~~~ 355 (470)
+.||.++++..++. ..++.++-++.....+-+ +..++++++.+. |-.+ -|+|+-. .+++..+|.
T Consensus 301 l~Afe~lL~~~Pe~---~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~ 377 (486)
T COG0380 301 LLAFERLLEEYPEW---RGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYR 377 (486)
T ss_pred HHHHHHHHHhChhh---hCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHh
Confidence 99999998755552 246778877776544333 344444444432 2211 2555553 278999999
Q ss_pred hcCEEEEccCCcccccchHHHHHHhcC----CCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHh-CHHHH
Q 012132 356 AIDVLVQNSQAWGECFGRITIEAMAFQ----LPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERR 430 (470)
Q Consensus 356 ~aDv~v~pS~~~~E~~g~~~lEAma~G----~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~ 430 (470)
.||+++.++. .+|+-++..|+.+|. =|.|-|...|....+.+ .++++|.| .++++++|.+.++ .++.+
T Consensus 378 ~aDv~lVtpl--rDGMNLvakEyVa~q~~~~G~LiLSeFaGaa~~L~~---AliVNP~d--~~~va~ai~~AL~m~~eEr 450 (486)
T COG0380 378 AADVMLVTPL--RDGMNLVAKEYVAAQRDKPGVLILSEFAGAASELRD---ALIVNPWD--TKEVADAIKRALTMSLEER 450 (486)
T ss_pred hhceeeeccc--cccccHHHHHHHHhhcCCCCcEEEeccccchhhhcc---CEeECCCC--hHHHHHHHHHHhcCCHHHH
Confidence 9999999999 999999999999985 47888887777776643 69999999 9999999999999 45666
Q ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Q 012132 431 LTMGKRGYERVKEIFQEHHMAERIAVVLKE 460 (470)
Q Consensus 431 ~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 460 (470)
++.-+..++.+.+ ++...+++.+++-+..
T Consensus 451 ~~r~~~~~~~v~~-~d~~~W~~~fl~~la~ 479 (486)
T COG0380 451 KERHEKLLKQVLT-HDVARWANSFLDDLAQ 479 (486)
T ss_pred HHHHHHHHHHHHh-hhHHHHHHHHHHHHHh
Confidence 6666666776654 8888888887765554
No 107
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=99.41 E-value=3.7e-10 Score=108.40 Aligned_cols=182 Identities=18% Similarity=0.236 Sum_probs=123.3
Q ss_pred HHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCC-
Q 012132 260 VRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ- 338 (470)
Q Consensus 260 ~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~- 338 (470)
.|+.+|+|++.++++.++++ .|=-+..++++.++++ +.|+.+|++..... ..++.+++.+++.|+.
T Consensus 275 ~R~~~gLp~d~vvF~~fn~~--~KI~p~~l~~W~~IL~-------~vP~S~L~L~~~~~----~~~~~l~~~~~~~Gv~~ 341 (468)
T PF13844_consen 275 TRAQYGLPEDAVVFGSFNNL--FKISPETLDLWARILK-------AVPNSRLWLLRFPA----SGEARLRRRFAAHGVDP 341 (468)
T ss_dssp ETGGGT--SSSEEEEE-S-G--GG--HHHHHHHHHHHH-------HSTTEEEEEEETST----THHHHHHHHHHHTTS-G
T ss_pred CHHHcCCCCCceEEEecCcc--ccCCHHHHHHHHHHHH-------hCCCcEEEEeeCCH----HHHHHHHHHHHHcCCCh
Confidence 37899999999888877764 5777899999998877 56999999887542 2467888999999985
Q ss_pred CcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcce-----eeec-CceeeeecCCC
Q 012132 339 DRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTE-----IVVN-GTTGLLHPVGK 410 (470)
Q Consensus 339 ~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e-----~v~~-~~~G~l~~~~d 410 (470)
+++.|.+.. ++-...|+.+|+++=+. .-+-+.+.+||+.+|+|||+-....... ++.. |-..+++. +
T Consensus 342 ~Ri~f~~~~~~~ehl~~~~~~DI~LDT~---p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~--s 416 (468)
T PF13844_consen 342 DRIIFSPVAPREEHLRRYQLADICLDTF---PYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIAD--S 416 (468)
T ss_dssp GGEEEEE---HHHHHHHGGG-SEEE--S---SS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-S--S
T ss_pred hhEEEcCCCCHHHHHHHhhhCCEEeeCC---CCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCC--C
Confidence 789998864 44556678899999775 3455799999999999999865222111 1111 21223333 2
Q ss_pred CChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--HcChhHHHHHHHHHHHHH
Q 012132 411 EGITPLAKNIVKLATHVERRLTMGKRGYERVKE--IFQEHHMAERIAVVLKEV 461 (470)
Q Consensus 411 ~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~--~fs~~~~~~~~~~~~~~~ 461 (470)
.++..+.-.+|.+|++.++.+.+.-++...+ .|+...+++++++.|+++
T Consensus 417 --~~eYv~~Av~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~m 467 (468)
T PF13844_consen 417 --EEEYVEIAVRLATDPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQM 467 (468)
T ss_dssp --HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh
Confidence 8899999999999999999999888877654 489999999999999886
No 108
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.38 E-value=2.5e-10 Score=105.24 Aligned_cols=253 Identities=15% Similarity=0.151 Sum_probs=147.7
Q ss_pred EEEEEeeccCC-Cch-hHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC----------hh
Q 012132 76 LVLLVSHELSL-SGG-PLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG----------QE 143 (470)
Q Consensus 76 kIl~v~~~~~~-~G~-~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 143 (470)
||+|.+...+- |.| -.+...||++|+++|++|.+++...+.. +.+.+...|+.++.... ..
T Consensus 1 ~i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~-------~~~~i~~~g~~v~~~~~~~~~~~d~~~~~ 73 (279)
T TIGR03590 1 KILFRADASSEIGLGHVMRCLTLARALHAQGAEVAFACKPLPGD-------LIDLLLSAGFPVYELPDESSRYDDALELI 73 (279)
T ss_pred CEEEEecCCccccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHH-------HHHHHHHcCCeEEEecCCCchhhhHHHHH
Confidence 57777776554 444 5788999999999999999999664431 23455667777765432 23
Q ss_pred hHHhhcCCcEEEEcccch-hhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhh
Q 012132 144 TINTALKADLIVLNTAVA-GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (470)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (470)
...+..+||+|++.+... ..+.. .++... +.+..+-+...+.+ ..+.++..... .+...
T Consensus 74 ~~l~~~~~d~vV~D~y~~~~~~~~-~~k~~~-----~~l~~iDD~~~~~~---------~~D~vin~~~~-~~~~~---- 133 (279)
T TIGR03590 74 NLLEEEKFDILIVDHYGLDADWEK-LIKEFG-----RKILVIDDLADRPH---------DCDLLLDQNLG-ADASD---- 133 (279)
T ss_pred HHHHhcCCCEEEEcCCCCCHHHHH-HHHHhC-----CeEEEEecCCCCCc---------CCCEEEeCCCC-cCHhH----
Confidence 445567899999876432 33332 232222 12223333321111 12222222222 11111
Q ss_pred hhhc-cCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHh
Q 012132 223 ERLR-IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKE 301 (470)
Q Consensus 223 ~~~~-~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~ 301 (470)
..+ .+... .+..|.+.-...+...... .....++ +.+.++++.|...+.+....+++++.++.
T Consensus 134 -y~~~~~~~~--~~l~G~~Y~~lr~eF~~~~----~~~~~~~----~~~~iLi~~GG~d~~~~~~~~l~~l~~~~----- 197 (279)
T TIGR03590 134 -YQGLVPANC--RLLLGPSYALLREEFYQLA----TANKRRK----PLRRVLVSFGGADPDNLTLKLLSALAESQ----- 197 (279)
T ss_pred -hcccCcCCC--eEEecchHHhhhHHHHHhh----Hhhhccc----ccCeEEEEeCCcCCcCHHHHHHHHHhccc-----
Confidence 112 23232 3445665444332211100 0011110 23467788888777676677788876541
Q ss_pred hcccCCceE-EEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHh
Q 012132 302 KKLEVPSVH-AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA 380 (470)
Q Consensus 302 ~~~~~~~~~-l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma 380 (470)
++++ .+|+|.+. +..+++++.++.. +++++.++++++.++|+.||++|.+ .|.++.|+++
T Consensus 198 -----~~~~i~vv~G~~~----~~~~~l~~~~~~~---~~i~~~~~~~~m~~lm~~aDl~Is~-------~G~T~~E~~a 258 (279)
T TIGR03590 198 -----INISITLVTGSSN----PNLDELKKFAKEY---PNIILFIDVENMAELMNEADLAIGA-------AGSTSWERCC 258 (279)
T ss_pred -----cCceEEEEECCCC----cCHHHHHHHHHhC---CCEEEEeCHHHHHHHHHHCCEEEEC-------CchHHHHHHH
Confidence 2333 33677764 3456777777654 4799999999999999999999963 3689999999
Q ss_pred cCCCEEecCC
Q 012132 381 FQLPVLGTAA 390 (470)
Q Consensus 381 ~G~PvI~s~~ 390 (470)
+|+|+|+...
T Consensus 259 ~g~P~i~i~~ 268 (279)
T TIGR03590 259 LGLPSLAICL 268 (279)
T ss_pred cCCCEEEEEe
Confidence 9999998754
No 109
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=5.8e-10 Score=106.45 Aligned_cols=343 Identities=13% Similarity=0.092 Sum_probs=208.2
Q ss_pred CcccccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC-----h
Q 012132 68 PLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG-----Q 142 (470)
Q Consensus 68 ~~~~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 142 (470)
.....++.+|.++++.+...........+.+.+.+.-+||..+....+. .. .+.+.+...--++++..+ .
T Consensus 253 ~~~~~~rlRvGylS~dlr~Havg~l~~~v~e~hDRdkfEvfay~~g~~~-~d----al~~rI~a~~~~~~~~~~~dd~e~ 327 (620)
T COG3914 253 IKRNGKRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPH-TD----ALQERISAAVEKWYPIGRMDDAEI 327 (620)
T ss_pred ccccccceeEEEeccccccchHHHHHHHHHHHhchhheEEEEEecCCCC-ch----hHHHHHHHhhhheeccCCcCHHHH
Confidence 3345678899999999887666677888888887777999888755222 22 123333333233344442 1
Q ss_pred hhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeee----ehhhHHHHH
Q 012132 143 ETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID----SHVTAEYWK 218 (470)
Q Consensus 143 ~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~----s~~~~~~~~ 218 (470)
-.-+.....||.+--+....-....++..+ | .|+..++-+..+..- .+..+.++.+ -.....++.
T Consensus 328 a~~I~~d~IdILvDl~g~T~d~r~~v~A~R-p---APiqvswlGy~aT~g-------~p~~DY~I~D~y~vPp~ae~yys 396 (620)
T COG3914 328 ANAIRTDGIDILVDLDGHTVDTRCQVFAHR-P---APIQVSWLGYPATTG-------SPNMDYFISDPYTVPPTAEEYYS 396 (620)
T ss_pred HHHHHhcCCeEEEeccCceeccchhhhhcC-C---CceEEeecccccccC-------CCcceEEeeCceecCchHHHHHH
Confidence 233345678888754433222112222211 1 344444443322111 1222333322 244455555
Q ss_pred HhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHH
Q 012132 219 NRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLEL 298 (470)
Q Consensus 219 ~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~ 298 (470)
+++.+ ++ -.+-++| .+.+...+ --|..+|+|++.++++++++ ..|-...+++-..++.+
T Consensus 397 Ekl~R---Lp-----~cy~p~d--~~~~v~p~--------~sR~~lglp~~avVf~c~~n--~~K~~pev~~~wmqIL~- 455 (620)
T COG3914 397 EKLWR---LP-----QCYQPVD--GFEPVTPP--------PSRAQLGLPEDAVVFCCFNN--YFKITPEVFALWMQILS- 455 (620)
T ss_pred HHHHh---cc-----cccCCCC--CcccCCCC--------cchhhcCCCCCeEEEEecCC--cccCCHHHHHHHHHHHH-
Confidence 55432 11 1112222 22222111 13678999999888877774 56777788888777765
Q ss_pred HHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCC-CCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHH
Q 012132 299 IKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI-QDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRIT 375 (470)
Q Consensus 299 l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l-~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~ 375 (470)
..|+..|++.|+|++ +...+.+++++++.|+ .++++|.+.. ++..+.|..||+++-+. .-+-..+.
T Consensus 456 ------~vP~Svl~L~~~~~~--~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTy---PY~g~TTa 524 (620)
T COG3914 456 ------AVPNSVLLLKAGGDD--AEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTY---PYGGHTTA 524 (620)
T ss_pred ------hCCCcEEEEecCCCc--HHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeecc---cCCCccch
Confidence 459999999998743 2578999999999998 4789999974 66778899999998665 34557899
Q ss_pred HHHHhcCCCEEec-------CCCC-cceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--Hc
Q 012132 376 IEAMAFQLPVLGT-------AAGG-TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE--IF 445 (470)
Q Consensus 376 lEAma~G~PvI~s-------~~~g-~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~--~f 445 (470)
+||+-+|+|||+- +.|+ +..-. |..-+++.+ .++..+.-..+-+|...+++....-++.... .|
T Consensus 525 ~daLwm~vPVlT~~G~~FasR~~~si~~~a--gi~e~vA~s----~~dYV~~av~~g~dral~q~~r~~l~~~r~tspL~ 598 (620)
T COG3914 525 SDALWMGVPVLTRVGEQFASRNGASIATNA--GIPELVADS----RADYVEKAVAFGSDRALRQQVRAELKRSRQTSPLF 598 (620)
T ss_pred HHHHHhcCceeeeccHHHHHhhhHHHHHhc--CCchhhcCC----HHHHHHHHHHhcccHHHHHhhHHHHHhccccCccc
Confidence 9999999999964 3332 11111 222223332 4566666666666776666655444433333 58
Q ss_pred ChhHHHHHHHHHHHHHHHh
Q 012132 446 QEHHMAERIAVVLKEVLKK 464 (470)
Q Consensus 446 s~~~~~~~~~~~~~~~l~~ 464 (470)
+.+..+++++.+|.++...
T Consensus 599 d~~~far~le~~y~~M~~~ 617 (620)
T COG3914 599 DPKAFARKLETLYWGMWSE 617 (620)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998764
No 110
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.30 E-value=3.3e-10 Score=109.66 Aligned_cols=174 Identities=13% Similarity=0.030 Sum_probs=111.3
Q ss_pred ceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCC-eEEEEEeec--ccCCCHHHHHHHHHHHHHHHHhhcccCC
Q 012132 231 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED-LLFAIINSV--SRGKGQDLFLHSFYESLELIKEKKLEVP 307 (470)
Q Consensus 231 ~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~i~~vGrl--~~~Kg~~~ll~a~~~l~~~l~~~~~~~~ 307 (470)
++.++.|++-....... + .+++++. .++++.|+- ...++++.+++++..+.+ + +
T Consensus 181 k~~~vGnPv~d~l~~~~---------~------~~l~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~-------~-~ 237 (396)
T TIGR03492 181 RASYLGNPMMDGLEPPE---------R------KPLLTGRFRIALLPGSRPPEAYRNLKLLLRALEALPD-------S-Q 237 (396)
T ss_pred eEEEeCcCHHhcCcccc---------c------cccCCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhh-------C-C
Confidence 67888888744432110 0 0444444 444444543 235678899999988743 3 5
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCC--------------CcEEEecccCCHHHHHHhcCEEEEccCCcccccch
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQ--------------DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGR 373 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~--------------~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~ 373 (470)
++.+++.-.+. ...+.+++..++.++. +++.+..+..++.++|+.||++|..| |.
T Consensus 238 ~~~~v~~~~~~----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADlvI~rS-------Gt 306 (396)
T TIGR03492 238 PFVFLAAIVPS----LSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADLGIAMA-------GT 306 (396)
T ss_pred CeEEEEEeCCC----CCHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCEEEECc-------CH
Confidence 77776654222 2445566666655543 23666677778999999999999776 55
Q ss_pred HHHHHHhcCCCEEecCCCCc---ceeeecC----ceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012132 374 ITIEAMAFQLPVLGTAAGGT---TEIVVNG----TTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYER 440 (470)
Q Consensus 374 ~~lEAma~G~PvI~s~~~g~---~e~v~~~----~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~ 440 (470)
+..|++++|+|+|....++. ..+.... ..+......+ ++.+++++.++++|++.+++|.+++++.
T Consensus 307 ~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~--~~~l~~~l~~ll~d~~~~~~~~~~~~~~ 378 (396)
T TIGR03492 307 ATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKN--PEQAAQVVRQLLADPELLERCRRNGQER 378 (396)
T ss_pred HHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 66999999999999874332 1111110 1334444455 8999999999999999888887544443
No 111
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.29 E-value=1.2e-09 Score=100.46 Aligned_cols=320 Identities=17% Similarity=0.144 Sum_probs=174.9
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhh--hhhhhhcce-eeEe--------cCCh
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSL--EHKMWDRGV-QVIS--------AKGQ 142 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~--------~~~~ 142 (470)
++||.++..+.+ |......|.++|+++=-+|.++...++.-.......+ ...+.-.|+ .+++ .+..
T Consensus 1 ~~ki~i~AGE~S---GDllGa~LikaLk~~~~~~efvGvgG~~m~aeG~~sl~~~~elsvmGf~EVL~~lp~llk~~~~~ 77 (381)
T COG0763 1 MLKIALSAGEAS---GDLLGAGLIKALKARYPDVEFVGVGGEKMEAEGLESLFDMEELSVMGFVEVLGRLPRLLKIRREL 77 (381)
T ss_pred CceEEEEecccc---hhhHHHHHHHHHHhhCCCeEEEEeccHHHHhccCccccCHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 368999887663 3467788999998873388887754332100000000 000111111 0000 0011
Q ss_pred hhHHhhcCCcEEEEcccc-hhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhh
Q 012132 143 ETINTALKADLIVLNTAV-AGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 143 ~~~~~~~~~DiV~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
.+.....+||++++-+.. ...-+...+++..|.+ |+++++--....|-..+........|...+.-..-.+++.
T Consensus 78 ~~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i--~iihYV~PsVWAWr~~Ra~~i~~~~D~lLailPFE~~~y~--- 152 (381)
T COG0763 78 VRYILANKPDVLILIDSPDFNLRVAKKLRKAGPKI--KIIHYVSPSVWAWRPKRAVKIAKYVDHLLAILPFEPAFYD--- 152 (381)
T ss_pred HHHHHhcCCCEEEEeCCCCCchHHHHHHHHhCCCC--CeEEEECcceeeechhhHHHHHHHhhHeeeecCCCHHHHH---
Confidence 122236899999987744 3444445555544432 3433333221222222333334455666666666555554
Q ss_pred hhhhccCCCceEEEecCCchhh-hhHhhhHHHHHHHHHHHHHHcCCCCCCe-EEEEEee-ccc-CCCHHHHHHHHHHHHH
Q 012132 222 RERLRIKMPDTYVVHLGNSKEL-MEVAEDNVAKRVLREHVRESLGVRNEDL-LFAIINS-VSR-GKGQDLFLHSFYESLE 297 (470)
Q Consensus 222 ~~~~~~~~~~i~vi~ngvd~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~i~~vGr-l~~-~Kg~~~ll~a~~~l~~ 297 (470)
++|.+ ++.|.++.-.+. +.+ .++..|+++|++.+.. +.+..|+ -+. .+....+.+|+.++.+
T Consensus 153 --k~g~~---~~yVGHpl~d~i~~~~---------~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~ 218 (381)
T COG0763 153 --KFGLP---CTYVGHPLADEIPLLP---------DREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKA 218 (381)
T ss_pred --hcCCC---eEEeCChhhhhccccc---------cHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHh
Confidence 45544 567766653333 111 1567999999987764 4455563 222 3345555566655543
Q ss_pred HHHhhcccCCceEEEEEeCCCCcChHHHHHHH-HHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHH
Q 012132 298 LIKEKKLEVPSVHAVIIGSDMNAQTKFESELR-NYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITI 376 (470)
Q Consensus 298 ~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~-~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~l 376 (470)
++|+.++++--.. +..+.++ +..+.......+++.+ .+-.+.+.+||+.+..| |.+.+
T Consensus 219 -------~~~~~~~vlp~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~aD~al~aS-------GT~tL 277 (381)
T COG0763 219 -------RYPDLKFVLPLVN-----AKYRRIIEEALKWEVAGLSLILID--GEKRKAFAAADAALAAS-------GTATL 277 (381)
T ss_pred -------hCCCceEEEecCc-----HHHHHHHHHHhhccccCceEEecC--chHHHHHHHhhHHHHhc-------cHHHH
Confidence 5699999987765 3333333 3333322211233322 46678999999998777 89999
Q ss_pred HHHhcCCCEEec-----------------CCCCcceeeecCcee--eeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHH
Q 012132 377 EAMAFQLPVLGT-----------------AAGGTTEIVVNGTTG--LLHPVGKEGITPLAKNIVKLATHVERRLTMGKRG 437 (470)
Q Consensus 377 EAma~G~PvI~s-----------------~~~g~~e~v~~~~~G--~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a 437 (470)
|+|.+|+|.|++ ..-+.+.++.+.... ++-.. ..++.+++++..++.|...++.+.+..
T Consensus 278 E~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~--~~pe~la~~l~~ll~~~~~~~~~~~~~ 355 (381)
T COG0763 278 EAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQED--CTPENLARALEELLLNGDRREALKEKF 355 (381)
T ss_pred HHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhh--cCHHHHHHHHHHHhcChHhHHHHHHHH
Confidence 999999999975 122333333221100 11112 238999999999999986666655544
Q ss_pred H
Q 012132 438 Y 438 (470)
Q Consensus 438 ~ 438 (470)
.
T Consensus 356 ~ 356 (381)
T COG0763 356 R 356 (381)
T ss_pred H
Confidence 3
No 112
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=5.8e-09 Score=97.09 Aligned_cols=317 Identities=15% Similarity=0.146 Sum_probs=191.4
Q ss_pred chhHHHHHHHHHHHhC--CceEEEEecCCCCCchhHHHhhhhhhhhc-ceeeEecC---ChhhHHhhcCCcEEEEccc--
Q 012132 88 GGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISAK---GQETINTALKADLIVLNTA-- 159 (470)
Q Consensus 88 G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~DiV~~~~~-- 159 (470)
|--+.+.-|.++|.++ ++.+.+-+..... .+. ....+... -..+.+.. ..+.+.+..+||++++...
T Consensus 60 GEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg--~e~---a~~~~~~~v~h~YlP~D~~~~v~rFl~~~~P~l~Ii~EtEl 134 (419)
T COG1519 60 GEVLAALPLVRALRERFPDLRILVTTMTPTG--AER---AAALFGDSVIHQYLPLDLPIAVRRFLRKWRPKLLIIMETEL 134 (419)
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEecCccH--HHH---HHHHcCCCeEEEecCcCchHHHHHHHHhcCCCEEEEEeccc
Confidence 4458899999999998 5666655533221 111 11111111 11223322 3456777899998887542
Q ss_pred chhhhHHHHhhhcCCccccceeeEEeeecc-ccchhhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecC
Q 012132 160 VAGKWLDAVLKEDVPRVLPNVLWWIHEMRG-HYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLG 238 (470)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ng 238 (470)
++.. +....+.++|.+..+--.+.+...+ ...+......+..++.+++.+....+.+. .+|.++ +.+..|-
T Consensus 135 WPnl-i~e~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~Rf~-----~LGa~~--v~v~GNl 206 (419)
T COG1519 135 WPNL-INELKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQRFR-----SLGAKP--VVVTGNL 206 (419)
T ss_pred cHHH-HHHHHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHHhcceeeecCHHHHHHHH-----hcCCcc--eEEecce
Confidence 2222 1222233343222211111121111 11223344556777888888888776666 567655 5665552
Q ss_pred CchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCC
Q 012132 239 NSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM 318 (470)
Q Consensus 239 vd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~ 318 (470)
- .+ ..+.+ ......+.+|.+++.+ +.+++..+. ...--+.++++++++++ ++||..+++|-.-+
T Consensus 207 K-fd-~~~~~---~~~~~~~~~r~~l~~~--r~v~iaaST--H~GEeei~l~~~~~l~~-------~~~~~llIlVPRHp 270 (419)
T COG1519 207 K-FD-IEPPP---QLAAELAALRRQLGGH--RPVWVAAST--HEGEEEIILDAHQALKK-------QFPNLLLILVPRHP 270 (419)
T ss_pred e-ec-CCCCh---hhHHHHHHHHHhcCCC--CceEEEecC--CCchHHHHHHHHHHHHh-------hCCCceEEEecCCh
Confidence 1 11 11111 1122356788888754 556655554 23334568899988876 67899999987643
Q ss_pred CcChHHHHHHHHHHHhcCCC------------CcEEEecc-cCCHHHHHHhcCEEEE-ccCCcccccchHHHHHHhcCCC
Q 012132 319 NAQTKFESELRNYVMQKKIQ------------DRVHFVNK-TLTVAPYLAAIDVLVQ-NSQAWGECFGRITIEAMAFQLP 384 (470)
Q Consensus 319 ~~~~~~~~~l~~~~~~~~l~------------~~V~~~g~-~~~~~~~~~~aDv~v~-pS~~~~E~~g~~~lEAma~G~P 384 (470)
+-.+.+++++++.|+. +.=.++|. --++..+|..+|+.+. -|. .+--|-.++|+.++|+|
T Consensus 271 ----ERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSl--v~~GGHN~LEpa~~~~p 344 (419)
T COG1519 271 ----ERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSL--VPIGGHNPLEPAAFGTP 344 (419)
T ss_pred ----hhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcc--cCCCCCChhhHHHcCCC
Confidence 5677888888888764 10123333 3789999999998665 455 55668899999999999
Q ss_pred EEecC----CCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 012132 385 VLGTA----AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE 443 (470)
Q Consensus 385 vI~s~----~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~ 443 (470)
||... ...+.+-+.+.+.|+.++. .+.+++++..+++|++.+++|++++.+.+.+
T Consensus 345 vi~Gp~~~Nf~ei~~~l~~~ga~~~v~~----~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~ 403 (419)
T COG1519 345 VIFGPYTFNFSDIAERLLQAGAGLQVED----ADLLAKAVELLLADEDKREAYGRAGLEFLAQ 403 (419)
T ss_pred EEeCCccccHHHHHHHHHhcCCeEEECC----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 99764 2333344444555666653 6889999999988999999999999998865
No 113
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=99.24 E-value=2.8e-09 Score=100.58 Aligned_cols=293 Identities=17% Similarity=0.135 Sum_probs=167.3
Q ss_pred hhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEe-----------------------cCChhhH
Q 012132 89 GPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS-----------------------AKGQETI 145 (470)
Q Consensus 89 ~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~ 145 (470)
|..+...|+++|+++.-++.++...++. +...|+..+. .......
T Consensus 10 GD~~ga~Li~~Lk~~~p~~~~~GvGG~~------------M~~~G~~~l~d~~~lsvmG~~Evl~~l~~~~~~~~~~~~~ 77 (373)
T PF02684_consen 10 GDLHGARLIRALKARDPDIEFYGVGGPR------------MQAAGVESLFDMEELSVMGFVEVLKKLPKLKRLFRKLVER 77 (373)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEechH------------HHhCCCceecchHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999998888888755432 1112222211 0111233
Q ss_pred HhhcCCcEEEEcccc-hhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhh
Q 012132 146 NTALKADLIVLNTAV-AGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRER 224 (470)
Q Consensus 146 ~~~~~~DiV~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 224 (470)
....+||+|+.-+.. -...+...++..... .|+++++--....|-..+....-...|...+.-..-.+++. .
T Consensus 78 ~~~~~pd~vIlID~pgFNlrlak~lk~~~~~--~~viyYI~PqvWAWr~~R~~~i~~~~D~ll~ifPFE~~~y~-----~ 150 (373)
T PF02684_consen 78 IKEEKPDVVILIDYPGFNLRLAKKLKKRGIP--IKVIYYISPQVWAWRPGRAKKIKKYVDHLLVIFPFEPEFYK-----K 150 (373)
T ss_pred HHHcCCCEEEEeCCCCccHHHHHHHHHhCCC--ceEEEEECCceeeeCccHHHHHHHHHhheeECCcccHHHHh-----c
Confidence 356899999987744 333344444433221 13444443222222222333333445666665555555555 3
Q ss_pred hccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeE-EEEEee-ccc-CCCHHHHHHHHHHHHHHHHh
Q 012132 225 LRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLL-FAIINS-VSR-GKGQDLFLHSFYESLELIKE 301 (470)
Q Consensus 225 ~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-i~~vGr-l~~-~Kg~~~ll~a~~~l~~~l~~ 301 (470)
.| -+++.+.|+.-... .+..+ +...++.+ +++++.+ .+..|+ -.. .+.+..+++++.++.+
T Consensus 151 ~g---~~~~~VGHPl~d~~-~~~~~-------~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~---- 214 (373)
T PF02684_consen 151 HG---VPVTYVGHPLLDEV-KPEPD-------RAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKK---- 214 (373)
T ss_pred cC---CCeEEECCcchhhh-ccCCC-------HHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHH----
Confidence 34 34677777753322 11111 34556666 7666654 455563 322 4456777888877765
Q ss_pred hcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhc
Q 012132 302 KKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAF 381 (470)
Q Consensus 302 ~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~ 381 (470)
++|++++++..... ...+.+++.....+....+.. ...+-.+.|++||+.+..| |.+.+|++.+
T Consensus 215 ---~~p~l~fvvp~a~~----~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~m~~ad~al~~S-------GTaTLE~Al~ 278 (373)
T PF02684_consen 215 ---QRPDLQFVVPVAPE----VHEELIEEILAEYPPDVSIVI--IEGESYDAMAAADAALAAS-------GTATLEAALL 278 (373)
T ss_pred ---hCCCeEEEEecCCH----HHHHHHHHHHHhhCCCCeEEE--cCCchHHHHHhCcchhhcC-------CHHHHHHHHh
Confidence 56999999887642 233445666655543322322 2357889999999999777 8999999999
Q ss_pred CCCEEecC-----------------CCCcceeeecCce--eeeecCCCCChHHHHHHHHHHHhCHHHHHHHH
Q 012132 382 QLPVLGTA-----------------AGGTTEIVVNGTT--GLLHPVGKEGITPLAKNIVKLATHVERRLTMG 434 (470)
Q Consensus 382 G~PvI~s~-----------------~~g~~e~v~~~~~--G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~ 434 (470)
|+|.|+.- .-+++.++-+.+. -++-+.. +++.+++++..+++|++.++...
T Consensus 279 g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~--~~~~i~~~~~~ll~~~~~~~~~~ 348 (373)
T PF02684_consen 279 GVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDA--TPENIAAELLELLENPEKRKKQK 348 (373)
T ss_pred CCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccC--CHHHHHHHHHHHhcCHHHHHHHH
Confidence 99998752 1122222221110 0122222 39999999999999987644433
No 114
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.23 E-value=1.1e-09 Score=107.36 Aligned_cols=92 Identities=17% Similarity=0.055 Sum_probs=67.9
Q ss_pred CCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCC
Q 012132 336 KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKE 411 (470)
Q Consensus 336 ~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~ 411 (470)
.++++|.+.++. ....+|..||++| .-|-..++.||+++|+|+|+....+ ..+.+...+.|...+..+.
T Consensus 285 ~~~~~v~~~~~~-p~~~ll~~~d~~I------~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~ 357 (401)
T cd03784 285 DLPDNVRVVDFV-PHDWLLPRCAAVV------HHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPREL 357 (401)
T ss_pred CCCCceEEeCCC-CHHHHhhhhheee------ecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccC
Confidence 456799999996 4678899999999 3444689999999999999986554 2334445567777766533
Q ss_pred ChHHHHHHHHHHHhCHHHHHHHHH
Q 012132 412 GITPLAKNIVKLATHVERRLTMGK 435 (470)
Q Consensus 412 ~~~~la~~i~~ll~~~~~~~~~~~ 435 (470)
+.+++.+++.++++++ .+++..+
T Consensus 358 ~~~~l~~al~~~l~~~-~~~~~~~ 380 (401)
T cd03784 358 TAERLAAALRRLLDPP-SRRRAAA 380 (401)
T ss_pred CHHHHHHHHHHHhCHH-HHHHHHH
Confidence 4899999999999854 3444333
No 115
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.21 E-value=6.2e-09 Score=99.81 Aligned_cols=198 Identities=15% Similarity=0.205 Sum_probs=114.4
Q ss_pred hhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCC-CeEEEEEeecc--cCCCHHHHHHHHHHHHHHHH
Q 012132 224 RLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNE-DLLFAIINSVS--RGKGQDLFLHSFYESLELIK 300 (470)
Q Consensus 224 ~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~i~~vGrl~--~~Kg~~~ll~a~~~l~~~l~ 300 (470)
+-|.++.++.++.|..-......... .++.+.+++|++.+ +++++.+-+-. .....+.+.+.++.+.+.
T Consensus 161 ~eg~~~~~i~~tG~~~iD~l~~~~~~------~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~-- 232 (365)
T TIGR03568 161 QMGEDPDRVFNVGSPGLDNILSLDLL------SKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDEL-- 232 (365)
T ss_pred HcCCCCCcEEEECCcHHHHHHhhhcc------CHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHh--
Confidence 34777788888877543332211111 13567788888644 56555555433 233333444444433221
Q ss_pred hhcccCCceEEEEEeC-CCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHH
Q 012132 301 EKKLEVPSVHAVIIGS-DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIE 377 (470)
Q Consensus 301 ~~~~~~~~~~l~ivG~-g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lE 377 (470)
..++ +++.. +.+......+.++++..+ .++|.+.+.. .++..+++.||++|-.|. |.. .|
T Consensus 233 -----~~~~--~vi~P~~~p~~~~i~~~i~~~~~~---~~~v~l~~~l~~~~~l~Ll~~a~~vitdSS------ggi-~E 295 (365)
T TIGR03568 233 -----NKNY--IFTYPNADAGSRIINEAIEEYVNE---HPNFRLFKSLGQERYLSLLKNADAVIGNSS------SGI-IE 295 (365)
T ss_pred -----ccCC--EEEEeCCCCCchHHHHHHHHHhcC---CCCEEEECCCChHHHHHHHHhCCEEEEcCh------hHH-Hh
Confidence 0234 33322 112111234444444221 3579999964 889999999999995553 333 89
Q ss_pred HHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Q 012132 378 AMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVV 457 (470)
Q Consensus 378 Ama~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~ 457 (470)
|.++|+|+|+- ++-+|.+..|.+.+++. .| ++++.+++.+++ +++.+..+ ......|...+.++++.++
T Consensus 296 A~~lg~Pvv~l--~~R~e~~~~g~nvl~vg-~~--~~~I~~a~~~~~-~~~~~~~~-----~~~~~pygdg~as~rI~~~ 364 (365)
T TIGR03568 296 APSFGVPTINI--GTRQKGRLRADSVIDVD-PD--KEEIVKAIEKLL-DPAFKKSL-----KNVKNPYGDGNSSERIIEI 364 (365)
T ss_pred hhhcCCCEEee--cCCchhhhhcCeEEEeC-CC--HHHHHHHHHHHh-ChHHHHHH-----hhCCCCCCCChHHHHHHHh
Confidence 99999999954 56788887777777674 34 899999999954 44433322 1112336556666666553
No 116
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.15 E-value=1.2e-08 Score=94.93 Aligned_cols=277 Identities=15% Similarity=0.116 Sum_probs=160.9
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC-------------
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------------- 141 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 141 (470)
|||++-....+ --.+...+++.|.++||+|.|.+...+. ..+.+...|++......
T Consensus 1 MkIwiDi~~p~---hvhfFk~~I~eL~~~GheV~it~R~~~~--------~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~ 69 (335)
T PF04007_consen 1 MKIWIDITHPA---HVHFFKNIIRELEKRGHEVLITARDKDE--------TEELLDLYGIDYIVIGKHGDSLYGKLLESI 69 (335)
T ss_pred CeEEEECCCch---HHHHHHHHHHHHHhCCCEEEEEEeccch--------HHHHHHHcCCCeEEEcCCCCCHHHHHHHHH
Confidence 57776554332 2378999999999999999999976543 34555566666544321
Q ss_pred -----hhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHH
Q 012132 142 -----QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEY 216 (470)
Q Consensus 142 -----~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 216 (470)
...+.++.+||++++..+......+..+ + .|.+....+.+.. ......++..+.+++........
T Consensus 70 ~R~~~l~~~~~~~~pDv~is~~s~~a~~va~~l--g-----iP~I~f~D~e~a~---~~~~Lt~Pla~~i~~P~~~~~~~ 139 (335)
T PF04007_consen 70 ERQYKLLKLIKKFKPDVAISFGSPEAARVAFGL--G-----IPSIVFNDTEHAI---AQNRLTLPLADVIITPEAIPKEF 139 (335)
T ss_pred HHHHHHHHHHHhhCCCEEEecCcHHHHHHHHHh--C-----CCeEEEecCchhh---ccceeehhcCCeeECCcccCHHH
Confidence 1133355899999988755443233222 2 3444444432111 11223345666666655554443
Q ss_pred HHHhhhhhhccCCCceEEE-ecCCchhh----hhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCC-----CH-
Q 012132 217 WKNRTRERLRIKMPDTYVV-HLGNSKEL----MEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGK-----GQ- 285 (470)
Q Consensus 217 ~~~~~~~~~~~~~~~i~vi-~ngvd~~~----~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~K-----g~- 285 (470)
+. ++|.. . .+. +||++... |.|+ .++.+++|+++++++++ |..+.+ |.
T Consensus 140 ~~-----~~G~~-~--~i~~y~G~~E~ayl~~F~Pd----------~~vl~~lg~~~~~yIvv---R~~~~~A~y~~~~~ 198 (335)
T PF04007_consen 140 LK-----RFGAK-N--QIRTYNGYKELAYLHPFKPD----------PEVLKELGLDDEPYIVV---RPEAWKASYDNGKK 198 (335)
T ss_pred HH-----hcCCc-C--CEEEECCeeeEEeecCCCCC----------hhHHHHcCCCCCCEEEE---EeccccCeeecCcc
Confidence 33 45544 2 344 77877532 4443 45778899876665543 444322 22
Q ss_pred HHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccC
Q 012132 286 DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 365 (470)
Q Consensus 286 ~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~ 365 (470)
+.+-+.+..+ .+. .+. ++++....+ . +++.+++ ++.++...-+..+++..||++|
T Consensus 199 ~i~~~ii~~L----~~~----~~~-vV~ipr~~~----~----~~~~~~~----~~~i~~~~vd~~~Ll~~a~l~I---- 253 (335)
T PF04007_consen 199 SILPEIIEEL----EKY----GRN-VVIIPRYED----Q----RELFEKY----GVIIPPEPVDGLDLLYYADLVI---- 253 (335)
T ss_pred chHHHHHHHH----Hhh----Cce-EEEecCCcc----h----hhHHhcc----CccccCCCCCHHHHHHhcCEEE----
Confidence 2233333333 321 333 566655421 1 1222333 2555555557779999999999
Q ss_pred CcccccchHHHHHHhcCCCEEecCCCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 366 AWGECFGRITIEAMAFQLPVLGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 366 ~~~E~~g~~~lEAma~G~PvI~s~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
.+| |....||...|+|.|.+..|. .-+.+ -+.|+++...| ++++.+.+.+...
T Consensus 254 --g~g-gTMa~EAA~LGtPaIs~~~g~~~~vd~~L--~~~Gll~~~~~--~~ei~~~v~~~~~ 309 (335)
T PF04007_consen 254 --GGG-GTMAREAALLGTPAISCFPGKLLAVDKYL--IEKGLLYHSTD--PDEIVEYVRKNLG 309 (335)
T ss_pred --eCC-cHHHHHHHHhCCCEEEecCCcchhHHHHH--HHCCCeEecCC--HHHHHHHHHHhhh
Confidence 343 678889999999999876442 33333 24589999888 9998886666543
No 117
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.13 E-value=1.3e-09 Score=103.28 Aligned_cols=120 Identities=17% Similarity=0.211 Sum_probs=86.1
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc
Q 012132 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~ 347 (470)
+.+.+++++|..... .++++++.+ ++..++++|.... + ...++|++.++.
T Consensus 191 ~~~~iLv~~gg~~~~----~~~~~l~~~-----------~~~~~~v~g~~~~-------~--------~~~~ni~~~~~~ 240 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG----DLIEALKAL-----------PDYQFIVFGPNAA-------D--------PRPGNIHVRPFS 240 (318)
T ss_pred CCCEEEEEeCCCcHH----HHHHHHHhC-----------CCCeEEEEcCCcc-------c--------ccCCCEEEeecC
Confidence 356788888876544 666776654 7789999977520 0 014689999987
Q ss_pred -CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCccee------eecCceeeeecCCCCChHHHHHHH
Q 012132 348 -LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEI------VVNGTTGLLHPVGKEGITPLAKNI 420 (470)
Q Consensus 348 -~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~------v~~~~~G~l~~~~d~~~~~la~~i 420 (470)
.++.++++.||++|..+ --.++.||+++|+|+|+-...+..|. ++..+.|...+..+.+++.|.+.|
T Consensus 241 ~~~~~~~m~~ad~vIs~~------G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l 314 (318)
T PF13528_consen 241 TPDFAELMAAADLVISKG------GYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFL 314 (318)
T ss_pred hHHHHHHHHhCCEEEECC------CHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHH
Confidence 89999999999999443 23459999999999999887664443 444556666665554578888888
Q ss_pred HHH
Q 012132 421 VKL 423 (470)
Q Consensus 421 ~~l 423 (470)
+++
T Consensus 315 ~~~ 317 (318)
T PF13528_consen 315 ERL 317 (318)
T ss_pred hcC
Confidence 753
No 118
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=99.06 E-value=1.8e-07 Score=86.56 Aligned_cols=339 Identities=17% Similarity=0.186 Sum_probs=191.1
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCC-ceEEEEecCCCCCchhHHHhhhhhhhhccee-------eEe-----
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG-TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ-------VIS----- 138 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G-~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----- 138 (470)
|.+|||++|...-|- ..-+..+++++.+.+ .+..|+......... . ....+...++. +..
T Consensus 1 m~~~Kv~~I~GTRPE---~iKmapli~~~~~~~~~~~~vi~TGQH~d~e-m---~~~~le~~~i~~pdy~L~i~~~~~tl 73 (383)
T COG0381 1 MKMLKVLTIFGTRPE---AIKMAPLVKALEKDPDFELIVIHTGQHRDYE-M---LDQVLELFGIRKPDYDLNIMKPGQTL 73 (383)
T ss_pred CCceEEEEEEecCHH---HHHHhHHHHHHHhCCCCceEEEEecccccHH-H---HHHHHHHhCCCCCCcchhccccCCCH
Confidence 567899999842210 145778899999886 666666533222111 0 11111111221 110
Q ss_pred -------cCChhhHHhhcCCcEEEEcccchhhhHHH--HhhhcCCccccceeeEEeeecccc-----chhhhhccccccc
Q 012132 139 -------AKGQETINTALKADLIVLNTAVAGKWLDA--VLKEDVPRVLPNVLWWIHEMRGHY-----FKLDYVKHLPLVA 204 (470)
Q Consensus 139 -------~~~~~~~~~~~~~DiV~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~~~~-----~~~~~~~~~~~~~ 204 (470)
......+....+||+|.+|.-....+... ++...+ |+ .|--.|.. +.....+. +.
T Consensus 74 ~~~t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~I-----pV---~HvEAGlRt~~~~~PEE~NR~---l~ 142 (383)
T COG0381 74 GEITGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKI-----PV---GHVEAGLRTGDLYFPEEINRR---LT 142 (383)
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCC-----ce---EEEecccccCCCCCcHHHHHH---HH
Confidence 11234666789999999987543333322 222222 22 23222211 11111221 22
Q ss_pred ceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHH-cCCCCCCeEEEEEeeccc-C
Q 012132 205 GAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRES-LGVRNEDLLFAIINSVSR-G 282 (470)
Q Consensus 205 ~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~i~~vGrl~~-~ 282 (470)
..++....+.....++-..+-|++++++.|+.|.+-....... +... ........ ++...++.+++..-|-.. .
T Consensus 143 ~~~S~~hfapte~ar~nLl~EG~~~~~IfvtGnt~iDal~~~~-~~~~---~~~~~~~~~~~~~~~~~iLvT~HRreN~~ 218 (383)
T COG0381 143 SHLSDLHFAPTEIARKNLLREGVPEKRIFVTGNTVIDALLNTR-DRVL---EDSKILAKGLDDKDKKYILVTAHRRENVG 218 (383)
T ss_pred HHhhhhhcCChHHHHHHHHHcCCCccceEEeCChHHHHHHHHH-hhhc---cchhhHHhhhccccCcEEEEEcchhhccc
Confidence 2233323222222222223568899999999997633322211 1100 01111222 444445677777777644 3
Q ss_pred CCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHH-HhcCCCCcEEEeccc--CCHHHHHHhcCE
Q 012132 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYV-MQKKIQDRVHFVNKT--LTVAPYLAAIDV 359 (470)
Q Consensus 283 Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~-~~~~l~~~V~~~g~~--~~~~~~~~~aDv 359 (470)
+++..+++++.++.+ +++++.++.--.. ...+++.. ..++-.++|+++.+. .+...+++.|-+
T Consensus 219 ~~~~~i~~al~~i~~-------~~~~~~viyp~H~-------~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~ 284 (383)
T COG0381 219 EPLEEICEALREIAE-------EYPDVIVIYPVHP-------RPRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFL 284 (383)
T ss_pred ccHHHHHHHHHHHHH-------hCCCceEEEeCCC-------ChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceE
Confidence 889999999988876 4467766654432 13344444 455655678888875 677888888866
Q ss_pred EEEccCCcccccchHHHHHHhcCCCEEecC-CCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012132 360 LVQNSQAWGECFGRITIEAMAFQLPVLGTA-AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGY 438 (470)
Q Consensus 360 ~v~pS~~~~E~~g~~~lEAma~G~PvI~s~-~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~ 438 (470)
.+--| |...=||-..|+||++-+ ...-+|.++.| +-.++.. + .+.+.+++.+++++++.+++|+...
T Consensus 285 iltDS-------GgiqEEAp~lg~Pvl~lR~~TERPE~v~ag-t~~lvg~-~--~~~i~~~~~~ll~~~~~~~~m~~~~- 352 (383)
T COG0381 285 ILTDS-------GGIQEEAPSLGKPVLVLRDTTERPEGVEAG-TNILVGT-D--EENILDAATELLEDEEFYERMSNAK- 352 (383)
T ss_pred EEecC-------CchhhhHHhcCCcEEeeccCCCCccceecC-ceEEeCc-c--HHHHHHHHHHHhhChHHHHHHhccc-
Confidence 66333 556779999999999876 45678877544 2234433 3 7999999999999999888886533
Q ss_pred HHHHHHcChhHHHHHHHHHHHHHH
Q 012132 439 ERVKEIFQEHHMAERIAVVLKEVL 462 (470)
Q Consensus 439 ~~~~~~fs~~~~~~~~~~~~~~~l 462 (470)
..|.-.+..+++.+++....
T Consensus 353 ----npYgdg~as~rIv~~l~~~~ 372 (383)
T COG0381 353 ----NPYGDGNASERIVEILLNYF 372 (383)
T ss_pred ----CCCcCcchHHHHHHHHHHHh
Confidence 34555556666666665543
No 119
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=98.97 E-value=1.1e-09 Score=92.28 Aligned_cols=135 Identities=19% Similarity=0.175 Sum_probs=70.3
Q ss_pred CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC---------------ChhhHH--hhc
Q 012132 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK---------------GQETIN--TAL 149 (470)
Q Consensus 87 ~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~--~~~ 149 (470)
||.++++.+|+++|.++||+|++++........ .....++.+.... ....+. ...
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 72 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDD--------EEEEDGVRVHRLPLPRRPWPLRLLRFLRRLRRLLAARRE 72 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG---------SEEETTEEEEEE--S-SSSGGGHCCHHHHHHHHCHHCT-
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCccc--------ccccCCceEEeccCCccchhhhhHHHHHHHHHHHhhhcc
Confidence 677999999999999999999999965544211 1122344443211 112333 568
Q ss_pred CCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc---ch-----hhhhcccccccceeeeehhhHHHHHHhh
Q 012132 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---FK-----LDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~---~~-----~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
+||+||+|++... ++....+.. ...|++.++|+..... +. ......+...+.+++.|....+.+.
T Consensus 73 ~~Dvv~~~~~~~~-~~~~~~~~~---~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~l~--- 145 (160)
T PF13579_consen 73 RPDVVHAHSPTAG-LVAALARRR---RGIPLVVTVHGTLFRRGSRWKRRLYRWLERRLLRRADRVIVVSEAMRRYLR--- 145 (160)
T ss_dssp --SEEEEEHHHHH-HHHHHHHHH---HT--EEEE-SS-T------HHHHHHHHHHHHHHHH-SEEEESSHHHHHHHH---
T ss_pred CCeEEEecccchh-HHHHHHHHc---cCCcEEEEECCCchhhccchhhHHHHHHHHHHHhcCCEEEECCHHHHHHHH---
Confidence 9999999985433 233333211 1368899999853221 11 1123445677888888888866655
Q ss_pred hhhhccCCCceEEEecC
Q 012132 222 RERLRIKMPDTYVVHLG 238 (470)
Q Consensus 222 ~~~~~~~~~~i~vi~ng 238 (470)
.++++.+++.|||||
T Consensus 146 --~~g~~~~ri~vipnG 160 (160)
T PF13579_consen 146 --RYGVPPDRIHVIPNG 160 (160)
T ss_dssp --HH---GGGEEE----
T ss_pred --HhCCCCCcEEEeCcC
Confidence 367888999999998
No 120
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.97 E-value=6.1e-07 Score=88.63 Aligned_cols=312 Identities=10% Similarity=0.066 Sum_probs=171.7
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEe--------------
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS-------------- 138 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 138 (470)
...||.+++.+. .|..+..+|+++|+++.-++.+....++. +...|++...
T Consensus 225 ~~~kIfI~AGE~---SGDlhgA~Li~aLk~~~P~i~~~GvGG~~------------M~aaG~e~l~d~~eLsVmG~~EVL 289 (608)
T PRK01021 225 SNTSCFISAGEH---SGDTLGGNLLKEIKALYPDIHCFGVGGPQ------------MRAEGFHPLFNMEEFQVSGFWEVL 289 (608)
T ss_pred cCCeEEEEeccc---cHHHHHHHHHHHHHhcCCCcEEEEEccHH------------HHhCcCcccCChHHhhhhhHHHHH
Confidence 345888888665 34588899999999987788877644332 1112221110
Q ss_pred ---------cCChhhHHhhcCCcEEEEcccch-hhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceee
Q 012132 139 ---------AKGQETINTALKADLIVLNTAVA-GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMI 208 (470)
Q Consensus 139 ---------~~~~~~~~~~~~~DiV~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~ 208 (470)
.+.........+||++++-+... ...++..+++.. +..|+++.+--....|-..+..+.-+..|..++
T Consensus 290 ~~l~~l~~~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~G--i~ipviyYVsPqVWAWR~~Rikki~k~vD~ll~ 367 (608)
T PRK01021 290 LALFKLWYRYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRG--YKGKIVHYVCPSIWAWRPKRKTILEKYLDLLLL 367 (608)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcC--CCCCEEEEECccceeeCcchHHHHHHHhhhhee
Confidence 01112334568999999876443 333444443322 112454444322222223333334445566666
Q ss_pred eehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCC-eEEEEEee-ccc-CCCH
Q 012132 209 DSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED-LLFAIINS-VSR-GKGQ 285 (470)
Q Consensus 209 ~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~i~~vGr-l~~-~Kg~ 285 (470)
.-..-.++++ +.|+ +++.+.|+.-.. ..... .+++.|+++|++++. .+-+..|+ -.+ .+.+
T Consensus 368 IfPFE~~~y~-----~~gv---~v~yVGHPL~d~-i~~~~-------~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rll 431 (608)
T PRK01021 368 ILPFEQNLFK-----DSPL---RTVYLGHPLVET-ISSFS-------PNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNL 431 (608)
T ss_pred cCccCHHHHH-----hcCC---CeEEECCcHHhh-cccCC-------CHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHH
Confidence 6666655555 3343 366777765222 11111 145678899997664 44455663 322 4566
Q ss_pred HHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccC
Q 012132 286 DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 365 (470)
Q Consensus 286 ~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~ 365 (470)
+.+++|++. +.+. ++.++++..... ...+.+++..+..++ -.+.+... ++-.+++++||+.+..|
T Consensus 432 Pv~l~aa~~--~~l~------~~l~fvvp~a~~----~~~~~i~~~~~~~~~-~~~~ii~~-~~~~~~m~aaD~aLaaS- 496 (608)
T PRK01021 432 TIQVQAFLA--SSLA------STHQLLVSSANP----KYDHLILEVLQQEGC-LHSHIVPS-QFRYELMRECDCALAKC- 496 (608)
T ss_pred HHHHHHHHH--HHhc------cCeEEEEecCch----hhHHHHHHHHhhcCC-CCeEEecC-cchHHHHHhcCeeeecC-
Confidence 777777761 1111 357777754321 234566666654331 02333321 13479999999999888
Q ss_pred CcccccchHHHHHHhcCCCEEecC-CC------------------CcceeeecCc--eeeeecCCCCChHHHHHHHHHHH
Q 012132 366 AWGECFGRITIEAMAFQLPVLGTA-AG------------------GTTEIVVNGT--TGLLHPVGKEGITPLAKNIVKLA 424 (470)
Q Consensus 366 ~~~E~~g~~~lEAma~G~PvI~s~-~~------------------g~~e~v~~~~--~G~l~~~~d~~~~~la~~i~~ll 424 (470)
|.+.+|++.+|+|.|+.- .+ +++.++.+.+ --++-..+|.+++.+++++ +++
T Consensus 497 ------GTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL 569 (608)
T PRK01021 497 ------GTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DIL 569 (608)
T ss_pred ------CHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHh
Confidence 899999999999998741 21 1122221111 0122101223499999996 888
Q ss_pred hCHHHHHHHHHHHHH
Q 012132 425 THVERRLTMGKRGYE 439 (470)
Q Consensus 425 ~~~~~~~~~~~~a~~ 439 (470)
.|++.++++.+...+
T Consensus 570 ~d~~~r~~~~~~l~~ 584 (608)
T PRK01021 570 KTSQSKEKQKDACRD 584 (608)
T ss_pred cCHHHHHHHHHHHHH
Confidence 888877777665544
No 121
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.80 E-value=7.2e-07 Score=84.46 Aligned_cols=81 Identities=12% Similarity=0.168 Sum_probs=59.8
Q ss_pred CCcEEEeccc-CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcce------eeecCceeeeecCCC
Q 012132 338 QDRVHFVNKT-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTE------IVVNGTTGLLHPVGK 410 (470)
Q Consensus 338 ~~~V~~~g~~-~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e------~v~~~~~G~l~~~~d 410 (470)
++++.+.++. +++.++|..||++|..+- ..++.||+++|+|+|.....+..| .+.+.+.|...+..+
T Consensus 228 ~~~v~~~~~~~~~~~~~l~~ad~vI~~~G------~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~ 301 (321)
T TIGR00661 228 NENVEIRRITTDNFKELIKNAELVITHGG------FSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKE 301 (321)
T ss_pred CCCEEEEECChHHHHHHHHhCCEEEECCC------hHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhh
Confidence 4689999987 589999999999996553 357999999999999988766444 244556777777665
Q ss_pred CChHHHHHHHHHHHhCH
Q 012132 411 EGITPLAKNIVKLATHV 427 (470)
Q Consensus 411 ~~~~~la~~i~~ll~~~ 427 (470)
. ++.+++...+.|+
T Consensus 302 --~-~~~~~~~~~~~~~ 315 (321)
T TIGR00661 302 --L-RLLEAILDIRNMK 315 (321)
T ss_pred --H-HHHHHHHhccccc
Confidence 5 5555555555443
No 122
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=98.70 E-value=5.1e-06 Score=80.38 Aligned_cols=304 Identities=14% Similarity=0.162 Sum_probs=148.1
Q ss_pred cccEEEEEeeccC-CCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCC
Q 012132 73 KSKLVLLVSHELS-LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (470)
Q Consensus 73 ~~~kIl~v~~~~~-~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (470)
++++|++.+.... .++-.+++.+.... ...++++.+++..... .....+..++.....+.+....+.
T Consensus 12 ~~~~Ivf~~~~g~~~~dN~~~l~~~l~~-~~~~~~~~~~~~~~~~-----------~~~~~~~~~v~~~s~~~~~~~~~A 79 (369)
T PF04464_consen 12 KKKKIVFESESGNKFSDNPKALFEYLIK-NYPDYKIYWIINKKSP-----------ELKPKGIKVVKFGSLKHIYYLARA 79 (369)
T ss_dssp EEEEEEEEBTTTTBS-HHHHHHHHHHHH-H-TTSEEEEEESSGGG---------------SS-EEEETTSHHHHHHHHHE
T ss_pred cCCEEEEEECCCCCCCCCHHHHHHHHHh-hCCCcEEEEEEcCchH-----------hhccCCceEEeecHHHHHHHHHhC
Confidence 4567888876432 24435555554441 2345788787744321 233456777777777777777778
Q ss_pred cEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchh----------hhhcccccccceeeeehhhHHHHHHhh
Q 012132 152 DLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL----------DYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 152 DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~----------~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
+++++.+......... .....+++..+|+....-+.. .........+.+++.|....+.+.+
T Consensus 80 k~~i~~~~~~~~~~~~------~~~~~~~i~lwHG~~~K~~g~~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~-- 151 (369)
T PF04464_consen 80 KYIISDSYFPDLIYFK------KRKNQKYIQLWHGIPLKKIGYDSPDNKNYRKNYKRNYRNYDYFIVSSEFEKEIFKK-- 151 (369)
T ss_dssp EEEEESS---T--TS---------TTSEEEE--SS--SB--GGG-S---TS-HHHHHHHTT-SEEEESSHHHHHHHHH--
T ss_pred cEEEECCCCCcccccc------cCCCcEEEEecCCCcccccchhccccccchhhhhhhccCCcEEEECCHHHHHHHHH--
Confidence 8998884332211100 112257888889872211111 1223345667777777776655554
Q ss_pred hhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCH------HHHHHHHHHH
Q 012132 222 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQ------DLFLHSFYES 295 (470)
Q Consensus 222 ~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~------~~ll~a~~~l 295 (470)
.++.+..+ ++..|.+....-...... .++.+++.++++.++.+|+++-........ ...++ +.++
T Consensus 152 --~f~~~~~~--i~~~G~PR~D~l~~~~~~----~~~~i~~~~~~~~~~k~ILyaPT~R~~~~~~~~~~~~~~~~-~~~l 222 (369)
T PF04464_consen 152 --AFGYPEDK--ILVTGYPRNDYLFNKSKE----NRNRIKKKLGIDKDKKVILYAPTWRDNSSNEYFKFFFSDLD-FEKL 222 (369)
T ss_dssp --HTT--GGG--EEES--GGGHHHHHSTT-----HHHHHHHHTT--SS-EEEEEE----GGG--GGSS----TT--HHHH
T ss_pred --HhccCcce--EEEeCCCeEhHHhccCHH----HHHHHHHHhccCCCCcEEEEeeccccccccccccccccccC-HHHH
Confidence 66766665 445565444322222111 156788899999888899998544322211 11221 1222
Q ss_pred HHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHH
Q 012132 296 LELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRIT 375 (470)
Q Consensus 296 ~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~ 375 (470)
. .+ ..+++.+++-.. |......... ....++|.+.....++.+++..||++| ++ ++-++
T Consensus 223 ~-~~-----~~~~~~li~k~H------p~~~~~~~~~--~~~~~~i~~~~~~~~~~~ll~~aDiLI------TD-ySSi~ 281 (369)
T PF04464_consen 223 N-FL-----LKNNYVLIIKPH------PNMKKKFKDF--KEDNSNIIFVSDNEDIYDLLAAADILI------TD-YSSII 281 (369)
T ss_dssp H-HH-----HTTTEEEEE--S------HHHHTT------TT-TTTEEE-TT-S-HHHHHHT-SEEE------ES-S-THH
T ss_pred H-HH-----hCCCcEEEEEeC------chhhhchhhh--hccCCcEEECCCCCCHHHHHHhcCEEE------Ee-chhHH
Confidence 1 11 126888887665 2322211111 334568888887789999999999999 33 34589
Q ss_pred HHHHhcCCCEEec--CCCCc---cee---eecCceeeeecCCCCChHHHHHHHHHHHhCHHHH
Q 012132 376 IEAMAFQLPVLGT--AAGGT---TEI---VVNGTTGLLHPVGKEGITPLAKNIVKLATHVERR 430 (470)
Q Consensus 376 lEAma~G~PvI~s--~~~g~---~e~---v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~ 430 (470)
.|++.+++|||-. |.... +.. ..+...|.++. + .++|.++|...+++++..
T Consensus 282 fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~~--~--~~eL~~~i~~~~~~~~~~ 340 (369)
T PF04464_consen 282 FDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIVY--N--FEELIEAIENIIENPDEY 340 (369)
T ss_dssp HHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EES--S--HHHHHHHHTTHHHHHHHT
T ss_pred HHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCceeC--C--HHHHHHHHHhhhhCCHHH
Confidence 9999999999954 33211 111 11223344443 3 899999999988765543
No 123
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=98.63 E-value=5.5e-07 Score=75.95 Aligned_cols=152 Identities=16% Similarity=0.170 Sum_probs=93.4
Q ss_pred ccEEEEEeec-cC--CCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC--Ch---h--
Q 012132 74 SKLVLLVSHE-LS--LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--GQ---E-- 143 (470)
Q Consensus 74 ~~kIl~v~~~-~~--~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~-- 143 (470)
|+||+++.+. .| .||-|+++.+|+..|.++||+|+|.|........ .....|+.++..+ .. .
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~--------~~~y~gv~l~~i~~~~~g~~~si 72 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYK--------EFEYNGVRLVYIPAPKNGSAESI 72 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCC--------CcccCCeEEEEeCCCCCCchHHH
Confidence 5799999987 33 3777999999999999999999999965443211 1112344443322 11 0
Q ss_pred ---------hH--Hh--hcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc----------chhhhhccc
Q 012132 144 ---------TI--NT--ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY----------FKLDYVKHL 200 (470)
Q Consensus 144 ---------~~--~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~----------~~~~~~~~~ 200 (470)
.+ .+ ..+.|+|+++....+.++....+. ++....+++..+|+..... ++.......
T Consensus 73 ~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~-~~~~g~~v~vN~DGlEWkR~KW~~~~k~~lk~~E~~av 151 (185)
T PF09314_consen 73 IYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFLRK-LRKKGGKVVVNMDGLEWKRAKWGRPAKKYLKFSEKLAV 151 (185)
T ss_pred HHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHHHh-hhhcCCcEEECCCcchhhhhhcCHHHHHHHHHHHHHHH
Confidence 11 11 135789998876644333333322 2222246777777653221 111222334
Q ss_pred ccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCc
Q 012132 201 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNS 240 (470)
Q Consensus 201 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd 240 (470)
...+..+++|..+.+++.+ +|+ ..+.++|++|.|
T Consensus 152 k~ad~lIaDs~~I~~y~~~----~y~--~~~s~~IaYGad 185 (185)
T PF09314_consen 152 KYADRLIADSKGIQDYIKE----RYG--RKKSTFIAYGAD 185 (185)
T ss_pred HhCCEEEEcCHHHHHHHHH----HcC--CCCcEEecCCCC
Confidence 5778899999999888887 444 466899999976
No 124
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.62 E-value=7.3e-06 Score=79.58 Aligned_cols=160 Identities=15% Similarity=0.140 Sum_probs=101.6
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccC
Q 012132 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348 (470)
Q Consensus 269 ~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~ 348 (470)
.+++.+..|..... ..+++.+.+.... -+.++++...+. + . ..-++++|+...++..
T Consensus 237 ~~~vyvslGt~~~~---~~l~~~~~~a~~~--------l~~~vi~~~~~~-~-----~------~~~~~p~n~~v~~~~p 293 (406)
T COG1819 237 RPIVYVSLGTVGNA---VELLAIVLEALAD--------LDVRVIVSLGGA-R-----D------TLVNVPDNVIVADYVP 293 (406)
T ss_pred CCeEEEEcCCcccH---HHHHHHHHHHHhc--------CCcEEEEecccc-c-----c------ccccCCCceEEecCCC
Confidence 34555566665433 3444443333221 467777766541 0 0 1225678899988864
Q ss_pred CHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHHHHHH
Q 012132 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 424 (470)
Q Consensus 349 ~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 424 (470)
. ..++..||++|... --.++.||+.+|+|+|+-..+. ..+.+++-+.|...+....+.+.++++|.+++
T Consensus 294 ~-~~~l~~ad~vI~hG------G~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL 366 (406)
T COG1819 294 Q-LELLPRADAVIHHG------GAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVL 366 (406)
T ss_pred H-HHHhhhcCEEEecC------CcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHh
Confidence 4 45999999999554 3568999999999999876542 44556666788888754444999999999999
Q ss_pred hCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Q 012132 425 THVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 459 (470)
+|+..++...+ .++...+.-..+++++.++++..
T Consensus 367 ~~~~~~~~~~~-~~~~~~~~~g~~~~a~~le~~~~ 400 (406)
T COG1819 367 ADDSYRRAAER-LAEEFKEEDGPAKAADLLEEFAR 400 (406)
T ss_pred cCHHHHHHHHH-HHHHhhhcccHHHHHHHHHHHHh
Confidence 99886655443 33334443444445544444433
No 125
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.62 E-value=1.9e-06 Score=81.91 Aligned_cols=270 Identities=13% Similarity=0.084 Sum_probs=136.6
Q ss_pred hhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeee-cc-c----cchhhhhcccccc-cceeeeehhhHH
Q 012132 143 ETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEM-RG-H----YFKLDYVKHLPLV-AGAMIDSHVTAE 215 (470)
Q Consensus 143 ~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~~-~----~~~~~~~~~~~~~-~~~~~~s~~~~~ 215 (470)
.......+||+|+++.-....+.......... .| +.++|+- +. . ......+..+..+ +-+++.+....+
T Consensus 60 ~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~---ip-v~HieaGlRs~d~~~g~~de~~R~~i~~la~lhf~~t~~~~~ 135 (346)
T PF02350_consen 60 ADVLEREKPDAVLVLGDRNEALAAALAAFYLN---IP-VAHIEAGLRSGDRTEGMPDEINRHAIDKLAHLHFAPTEEARE 135 (346)
T ss_dssp HHHHHHHT-SEEEEETTSHHHHHHHHHHHHTT----E-EEEES-----S-TTSSTTHHHHHHHHHHH-SEEEESSHHHHH
T ss_pred HHHHHhcCCCEEEEEcCCchHHHHHHHHHHhC---CC-EEEecCCCCccccCCCCchhhhhhhhhhhhhhhccCCHHHHH
Confidence 35556789999999875543333332222111 34 3344432 10 1 1122222333222 233444444433
Q ss_pred HHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHH-HHHc-CCCCCCeEEEEEeecccC---CCHHHHHH
Q 012132 216 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHV-RESL-GVRNEDLLFAIINSVSRG---KGQDLFLH 290 (470)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~-r~~~-~~~~~~~~i~~vGrl~~~---Kg~~~ll~ 290 (470)
.+. +.|.++.++.++.|..-.......+.. .+.. ...+ ....+++++++.-|.+.. .....+.+
T Consensus 136 ~L~-----~~G~~~~rI~~vG~~~~D~l~~~~~~~------~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i~~ 204 (346)
T PF02350_consen 136 RLL-----QEGEPPERIFVVGNPGIDALLQNKEEI------EEKYKNSGILQDAPKPYILVTLHPVTNEDNPERLEQILE 204 (346)
T ss_dssp HHH-----HTT--GGGEEE---HHHHHHHHHHHTT------CC-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--HHHHHH
T ss_pred HHH-----hcCCCCCeEEEEChHHHHHHHHhHHHH------hhhhhhHHHHhccCCCEEEEEeCcchhcCChHHHHHHHH
Confidence 333 458889999999876533332211110 0011 1111 114566777666554332 34556666
Q ss_pred HHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcc
Q 012132 291 SFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWG 368 (470)
Q Consensus 291 a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~ 368 (470)
++..+.+. +++.+++.....+ .....+.+..+++ +++++.... .++..+++.|+++|--|
T Consensus 205 ~l~~L~~~--------~~~~vi~~~hn~p---~~~~~i~~~l~~~---~~v~~~~~l~~~~~l~ll~~a~~vvgdS---- 266 (346)
T PF02350_consen 205 ALKALAER--------QNVPVIFPLHNNP---RGSDIIIEKLKKY---DNVRLIEPLGYEEYLSLLKNADLVVGDS---- 266 (346)
T ss_dssp HHHHHHHH--------TTEEEEEE--S-H---HHHHHHHHHHTT----TTEEEE----HHHHHHHHHHESEEEESS----
T ss_pred HHHHHHhc--------CCCcEEEEecCCc---hHHHHHHHHhccc---CCEEEECCCCHHHHHHHHhcceEEEEcC----
Confidence 66666542 5788888776321 4566666666655 388888764 78899999999999555
Q ss_pred cccchHHH-HHHhcCCCEEecC-CCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcC
Q 012132 369 ECFGRITI-EAMAFQLPVLGTA-AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQ 446 (470)
Q Consensus 369 E~~g~~~l-EAma~G~PvI~s~-~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs 446 (470)
| .+. ||..+|+|+|.-+ .|.-.+.+..+.+ .++. .| .+++.++|.+++++.+.+..+.. ...-|.
T Consensus 267 ---s-GI~eEa~~lg~P~v~iR~~geRqe~r~~~~n-vlv~-~~--~~~I~~ai~~~l~~~~~~~~~~~-----~~npYg 333 (346)
T PF02350_consen 267 ---S-GIQEEAPSLGKPVVNIRDSGERQEGRERGSN-VLVG-TD--PEAIIQAIEKALSDKDFYRKLKN-----RPNPYG 333 (346)
T ss_dssp ---H-HHHHHGGGGT--EEECSSS-S-HHHHHTTSE-EEET-SS--HHHHHHHHHHHHH-HHHHHHHHC-----S--TT-
T ss_pred ---c-cHHHHHHHhCCeEEEecCCCCCHHHHhhcce-EEeC-CC--HHHHHHHHHHHHhChHHHHhhcc-----CCCCCC
Confidence 3 466 9999999999985 4555666655544 4455 45 99999999999988554444321 123466
Q ss_pred hhHHHHHHHHHH
Q 012132 447 EHHMAERIAVVL 458 (470)
Q Consensus 447 ~~~~~~~~~~~~ 458 (470)
-.+.++++.+++
T Consensus 334 dG~as~rI~~~L 345 (346)
T PF02350_consen 334 DGNASERIVEIL 345 (346)
T ss_dssp SS-HHHHHHHHH
T ss_pred CCcHHHHHHHhh
Confidence 666677766655
No 126
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.59 E-value=1.2e-05 Score=70.73 Aligned_cols=293 Identities=17% Similarity=0.125 Sum_probs=153.5
Q ss_pred cEEEEEeeccCC-Cch-hHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 75 KLVLLVSHELSL-SGG-PLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 75 ~kIl~v~~~~~~-~G~-~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
|||+|++....- |+| -.+...||++|.++|..+..++.+.... . +.+.+...++....... ..+..++|
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~---~---~~~~~~~f~~~~~~~~n---~ik~~k~d 71 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEA---I---IHKVYEGFKVLEGRGNN---LIKEEKFD 71 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhh---h---hhhhhhhccceeeeccc---ccccccCC
Confidence 799999987654 555 5789999999999998888887443211 1 11111112222222222 55678999
Q ss_pred EEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCce
Q 012132 153 LIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDT 232 (470)
Q Consensus 153 iV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i 232 (470)
+++..+-....-....++.. ...+.+. +.+.....+. ..+.+ .... .+ -.+.++..+.+.
T Consensus 72 ~lI~Dsygl~~dd~k~ik~e---~~~k~l~-fDd~~~~~~~--------d~d~i---vN~~----~~-a~~~y~~v~~k~ 131 (318)
T COG3980 72 LLIFDSYGLNADDFKLIKEE---AGSKILI-FDDENAKSFK--------DNDLI---VNAI----LN-ANDYYGLVPNKT 131 (318)
T ss_pred EEEEeccCCCHHHHHHHHHH---hCCcEEE-ecCCCccchh--------hhHhh---hhhh----hc-chhhccccCcce
Confidence 99987643322222222210 1122222 2222222111 00000 1111 11 111344444443
Q ss_pred EEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEE
Q 012132 233 YVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAV 312 (470)
Q Consensus 233 ~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ 312 (470)
-++-|.+.-...+.... .|++.+++ +-+-+++..|. +..|| +.++.++.+.+ .++-+.
T Consensus 132 -~~~lGp~y~~lr~eF~~-----~r~~~~~r----~~r~ilI~lGG-sDpk~--lt~kvl~~L~~---------~~~nl~ 189 (318)
T COG3980 132 -RYYLGPGYAPLRPEFYA-----LREENTER----PKRDILITLGG-SDPKN--LTLKVLAELEQ---------KNVNLH 189 (318)
T ss_pred -EEEecCCceeccHHHHH-----hHHHHhhc----chheEEEEccC-CChhh--hHHHHHHHhhc---------cCeeEE
Confidence 34456655544333211 12333332 23334555664 33454 45566666533 233333
Q ss_pred -EEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEec---
Q 012132 313 -IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT--- 388 (470)
Q Consensus 313 -ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s--- 388 (470)
++|++. |....+++.+++. +++.+.-..++|+++|..||+.+... |.++.||...|+|.++-
T Consensus 190 iV~gs~~----p~l~~l~k~~~~~---~~i~~~~~~~dma~LMke~d~aI~Aa-------GstlyEa~~lgvP~l~l~~a 255 (318)
T COG3980 190 IVVGSSN----PTLKNLRKRAEKY---PNINLYIDTNDMAELMKEADLAISAA-------GSTLYEALLLGVPSLVLPLA 255 (318)
T ss_pred EEecCCC----cchhHHHHHHhhC---CCeeeEecchhHHHHHHhcchheecc-------chHHHHHHHhcCCceEEeee
Confidence 345543 3556666666655 68999888899999999999988443 78999999999994332
Q ss_pred -CCCCcceeeecCceeeeecC---CCCChHHHHHHHHHHHhCHHHHHHHHHH
Q 012132 389 -AAGGTTEIVVNGTTGLLHPV---GKEGITPLAKNIVKLATHVERRLTMGKR 436 (470)
Q Consensus 389 -~~~g~~e~v~~~~~G~l~~~---~d~~~~~la~~i~~ll~~~~~~~~~~~~ 436 (470)
+.-....... ..|..... .. .......+.++.+|...+..+...
T Consensus 256 ~NQ~~~a~~f~--~lg~~~~l~~~l~--~~~~~~~~~~i~~d~~~rk~l~~~ 303 (318)
T COG3980 256 ENQIATAKEFE--ALGIIKQLGYHLK--DLAKDYEILQIQKDYARRKNLSFG 303 (318)
T ss_pred ccHHHHHHHHH--hcCchhhccCCCc--hHHHHHHHHHhhhCHHHhhhhhhc
Confidence 2111111111 11222211 11 467777788888888877665443
No 127
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.58 E-value=1.1e-06 Score=85.96 Aligned_cols=114 Identities=15% Similarity=0.156 Sum_probs=79.7
Q ss_pred CCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCC
Q 012132 337 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEG 412 (470)
Q Consensus 337 l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~ 412 (470)
++++|.+.++... .+++..||++|..+- ..++.||+++|+|+|+....+ ..+.+.+.+.|......+.+
T Consensus 273 ~~~~v~~~~~~p~-~~ll~~~~~~I~hgG------~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~ 345 (392)
T TIGR01426 273 LPPNVEVRQWVPQ-LEILKKADAFITHGG------MNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVT 345 (392)
T ss_pred CCCCeEEeCCCCH-HHHHhhCCEEEECCC------chHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCC
Confidence 4578999998754 488999999995442 358999999999999976443 22334455577777655444
Q ss_pred hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Q 012132 413 ITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 413 ~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 458 (470)
.++++++|.++++|++.++++.+- ++.+...-..+..++.+++++
T Consensus 346 ~~~l~~ai~~~l~~~~~~~~~~~l-~~~~~~~~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 346 AEKLREAVLAVLSDPRYAERLRKM-RAEIREAGGARRAADEIEGFL 390 (392)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHhh
Confidence 799999999999998866665333 333444456666666665543
No 128
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=98.57 E-value=8.5e-06 Score=73.34 Aligned_cols=170 Identities=9% Similarity=0.034 Sum_probs=116.2
Q ss_pred CCeEEEEEee-cccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc
Q 012132 269 EDLLFAIINS-VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (470)
Q Consensus 269 ~~~~i~~vGr-l~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~ 347 (470)
+++.|+ +|+ -++.-++..+++++.+.. ..++++++-=+-+.+...|.+++++.++++--.++++.+-..
T Consensus 145 ~~~tIl-vGNSgd~SN~Hie~L~~l~~~~---------~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~ 214 (322)
T PRK02797 145 GKMTIL-VGNSGDRSNRHIEALRALHQQF---------GDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEK 214 (322)
T ss_pred CceEEE-EeCCCCCcccHHHHHHHHHHHh---------CCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhh
Confidence 445554 555 467778888888887653 267888776554334456999999999998765788877642
Q ss_pred ---CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecC-CCCcceeeecCceeeeecCCCCChHHHHHHHHHH
Q 012132 348 ---LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA-AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 423 (470)
Q Consensus 348 ---~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~-~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~l 423 (470)
++..++++.||+.++.-. +.+|.|+.++ .+..|+||+.++ ++-..++.+.+ .-++++.++-|...+.
T Consensus 215 l~f~eYl~lL~~~Dl~~f~~~-RQQgiGnl~l-Li~~G~~v~l~r~n~fwqdl~e~g-v~Vlf~~d~L~~~~v~------ 285 (322)
T PRK02797 215 LPFDDYLALLRQCDLGYFIFA-RQQGIGTLCL-LIQLGKPVVLSRDNPFWQDLTEQG-LPVLFTGDDLDEDIVR------ 285 (322)
T ss_pred CCHHHHHHHHHhCCEEEEeec-hhhHHhHHHH-HHHCCCcEEEecCCchHHHHHhCC-CeEEecCCcccHHHHH------
Confidence 788999999999998766 5899997665 899999999885 55556655433 2233454431122221
Q ss_pred HhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH
Q 012132 424 ATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 463 (470)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~ 463 (470)
+..+++....++.+. |+.+++.+.|.++++....
T Consensus 286 ----e~~rql~~~dk~~I~--Ff~pn~~~~W~~~l~~~~g 319 (322)
T PRK02797 286 ----EAQRQLASVDKNIIA--FFSPNYLQGWRNALAIAAG 319 (322)
T ss_pred ----HHHHHHHhhCcceee--ecCHhHHHHHHHHHHHhhC
Confidence 223334444455453 9999999999999987654
No 129
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.53 E-value=1e-05 Score=76.32 Aligned_cols=250 Identities=15% Similarity=0.054 Sum_probs=125.0
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcce-eeEe-cCCh-----hhHH
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV-QVIS-AKGQ-----ETIN 146 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~-----~~~~ 146 (470)
+|||++++.+. .|..+...|+++|++ ++.++...++.- .+....+. .+.-.|+ .+++ .+.. +...
T Consensus 1 ~~~i~i~aGE~---SGD~~ga~l~~~l~~---~~~~~G~GG~~m-~~~~~~~~-~lsv~G~~evl~~~~~~~~~~~~~~~ 72 (347)
T PRK14089 1 MMKILVSALEP---SANLHLKELLKNLPK---DYELIGIFDKSL-GNPLYDSR-EFSIMGFVDVLPKLFFAKKAIKEMVE 72 (347)
T ss_pred CcEEEEEeccc---cHHHHHHHHHHHHhc---CCEEEEEechHH-HHhcCChH-HhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 46899888665 345788889999987 566665433221 00000000 0000110 0000 0000 0111
Q ss_pred hhcCCcEEEEcccch-hhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhh
Q 012132 147 TALKADLIVLNTAVA-GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERL 225 (470)
Q Consensus 147 ~~~~~DiV~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 225 (470)
...+||++++-+... ...+...+++..+. .|+++++--....|-..+..+..+..+...+....-.+ .|
T Consensus 73 ~~~~pd~~i~iD~p~Fnl~lak~~k~~~~~--i~viyyi~PqvWAWr~~R~~~i~k~~d~vl~ifPFE~~--------~y 142 (347)
T PRK14089 73 LAKQADKVLLMDSSSFNIPLAKKIKKAYPK--KEIIYYILPQVWAWKKGRAKILEKYCDFLASILPFEVQ--------FY 142 (347)
T ss_pred HhcCCCEEEEeCCCCCCHHHHHHHHhcCCC--CCEEEEECccceeeCcchHHHHHHHHhhhhccCCCCHH--------Hh
Confidence 237999999876443 34345544443222 34544443222222222333333333433333221111 22
Q ss_pred ccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeeccc--CCCHHHHHHHHHHHHHHHHhhc
Q 012132 226 RIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR--GKGQDLFLHSFYESLELIKEKK 303 (470)
Q Consensus 226 ~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~--~Kg~~~ll~a~~~l~~~l~~~~ 303 (470)
| .+++++.|++-... ... +.. +++++.+.++.|+-.. .+.+..+++++.++.+
T Consensus 143 g---~~~~~VGhPl~d~~-~~~-------------~~~--~~~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~------ 197 (347)
T PRK14089 143 Q---SKATYVGHPLLDEI-KEF-------------KKD--LDKEGTIAFMPGSRKSEIKRLMPIFKELAKKLEG------ 197 (347)
T ss_pred C---CCCEEECCcHHHhh-hhh-------------hhh--cCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHhh------
Confidence 2 34567777753321 110 011 2234455556664321 2445556666666543
Q ss_pred ccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCC
Q 012132 304 LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL 383 (470)
Q Consensus 304 ~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~ 383 (470)
+ ...+++.|.. ..+.+++...+. ..+.+.+ +..++|+.||+.+..| |.+.+|++.+|+
T Consensus 198 -~--~~~~~i~~a~------~~~~i~~~~~~~---~~~~~~~---~~~~~m~~aDlal~~S-------GT~TLE~al~g~ 255 (347)
T PRK14089 198 -K--EKILVVPSFF------KGKDLKEIYGDI---SEFEISY---DTHKALLEAEFAFICS-------GTATLEAALIGT 255 (347)
T ss_pred -c--CcEEEEeCCC------cHHHHHHHHhcC---CCcEEec---cHHHHHHhhhHHHhcC-------cHHHHHHHHhCC
Confidence 2 2677777764 124555554432 2344543 6788999999999777 788889999999
Q ss_pred CEEec
Q 012132 384 PVLGT 388 (470)
Q Consensus 384 PvI~s 388 (470)
|.|..
T Consensus 256 P~Vv~ 260 (347)
T PRK14089 256 PFVLA 260 (347)
T ss_pred CEEEE
Confidence 99975
No 130
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.51 E-value=4.1e-06 Score=77.05 Aligned_cols=324 Identities=13% Similarity=0.057 Sum_probs=180.1
Q ss_pred CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceee-EecCC----hhhHHhhcCCcEEEEcccc-
Q 012132 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-ISAKG----QETINTALKADLIVLNTAV- 160 (470)
Q Consensus 87 ~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~DiV~~~~~~- 160 (470)
+|...+..-+.++|..+||+|..+-+....... ........+... +.... .....+.+++|+|+.....
T Consensus 14 ~~~~~~~~~~~~~l~~~g~kvlflE~~~~~~~k-----~rd~~~~~~~~~~~~~~~~e~~~~~~i~~fk~d~iv~~~~~~ 88 (373)
T COG4641 14 NGSAEYYRGLLRALKMDGMKVLFLESGDFWDYK-----NRDIDAEDGCTEAFYKDQPELESLLYIREFKPDIIVNMSGDD 88 (373)
T ss_pred CCchhhHHHHHHHHHhccceEEEEecccHHhhh-----cccccCccchhheeecCcHHHHHHHHHHhcCCcEEEEecccc
Confidence 455678888999999999999998754332110 011111122211 11111 1234467999999876533
Q ss_pred -----hhhhHHHHhhhcCCccccceeeEEeeecccc--chhhhhccc-----ccccceeeeehhhHHHHHHhhhhhhccC
Q 012132 161 -----AGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--FKLDYVKHL-----PLVAGAMIDSHVTAEYWKNRTRERLRIK 228 (470)
Q Consensus 161 -----~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~--~~~~~~~~~-----~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 228 (470)
....+..+++. ...|+++|.-+..... +.......+ -..+.+++..... ....+.+. .-
T Consensus 89 ~~~~~~~~~~~a~l~~----~~l~~~~w~te~p~~~~~~~~~~~~~~~~~~l~~fd~v~~~g~~l---~~~~yyq~--~~ 159 (373)
T COG4641 89 QPDEESTIDLWAWLKR----KCLPVIVWYTEDPYDTDIFSQVAEEQLARRPLFIFDNVLSFGGGL---VANKYYQE--GG 159 (373)
T ss_pred cccceehHHHHHHhhc----CCcceEEEEeccchhhhhhhhhhHHHhhccccchhhhhhhccchH---HHHHHHHh--hc
Confidence 11111222221 2234444433321111 111111111 1111111111111 12222111 12
Q ss_pred CCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccC-C
Q 012132 229 MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEV-P 307 (470)
Q Consensus 229 ~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~-~ 307 (470)
..++..++.++|.+.|.+.+... .-.--+.++|.-.+. ..+..+++.-.-.. +. -
T Consensus 160 ~~~~~~~~~a~d~~~~~~i~~da----------------~~~~dL~~ign~~pD-----r~e~~ke~~~~ps~---kl~v 215 (373)
T COG4641 160 ARNCYYLPWAVDDSLFHPIPPDA----------------SYDVDLNLIGNPYPD-----RVEEIKEFFVEPSF---KLMV 215 (373)
T ss_pred ccceeccCccCCchhcccCCccc----------------cceeeeEEecCCCcc-----HHHHHHHHhhccch---hhhc
Confidence 45688999999999988765221 112346778865443 22333322110000 00 1
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc---CCHHHHHHhcCEEEEccCCc-ccc---cchHHHHHHh
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT---LTVAPYLAAIDVLVQNSQAW-GEC---FGRITIEAMA 380 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~---~~~~~~~~~aDv~v~pS~~~-~E~---~g~~~lEAma 380 (470)
+-++.+.|... ...+.. -.-.+++.+.|+. ..+...++..|+.+.-++.. .++ +.+-+.|+|+
T Consensus 216 ~rr~~~~g~~y------~~~~~~----~~~~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiag 285 (373)
T COG4641 216 DRRFYVLGPRY------PDDIWG----RTWEPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAG 285 (373)
T ss_pred cceeeecCCcc------chhhhc----ccccchhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhh
Confidence 24556666541 111110 0112355566652 67788888889888654420 122 3678999999
Q ss_pred cCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Q 012132 381 FQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 460 (470)
Q Consensus 381 ~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 460 (470)
||.|.|++...++...+.+|+.=+++. | .+++.+.+..++..++.++++++.+++++...|+-+.-+..+.+....
T Consensus 286 c~~~liT~~~~~~e~~f~pgk~~iv~~--d--~kdl~~~~~yll~h~~erkeiae~~ye~V~~~ht~~~r~~~~~~~i~s 361 (373)
T COG4641 286 CGGFLITDYWKDLEKFFKPGKDIIVYQ--D--SKDLKEKLKYLLNHPDERKEIAECAYERVLARHTYEERIFKLLNEIAS 361 (373)
T ss_pred cCCccccccHHHHHHhcCCchheEEec--C--HHHHHHHHHHHhcCcchHHHHHHhhHHHHHHhccHHHHHHHHHHHHHH
Confidence 999999999999888888776534433 4 899999999999999999999999999999989988888777777666
Q ss_pred HH
Q 012132 461 VL 462 (470)
Q Consensus 461 ~l 462 (470)
+.
T Consensus 362 I~ 363 (373)
T COG4641 362 IN 363 (373)
T ss_pred HH
Confidence 43
No 131
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.42 E-value=7.4e-05 Score=66.86 Aligned_cols=271 Identities=13% Similarity=0.093 Sum_probs=150.4
Q ss_pred hHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC-------------------ChhhHHhhcC
Q 012132 90 PLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-------------------GQETINTALK 150 (470)
Q Consensus 90 ~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~ 150 (470)
.++..++...|.++||+|.+-|...+. +.+.+...|++..... ...++....+
T Consensus 13 vhfFk~lI~elekkG~ev~iT~rd~~~--------v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki~~~~k 84 (346)
T COG1817 13 VHFFKNLIWELEKKGHEVLITCRDFGV--------VTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKIIAEFK 84 (346)
T ss_pred hhHHHHHHHHHHhCCeEEEEEEeecCc--------HHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHHHhhcC
Confidence 378999999999999999998866554 3555555666553322 1224445689
Q ss_pred CcEEEE-cccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhhccCC
Q 012132 151 ADLIVL-NTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKM 229 (470)
Q Consensus 151 ~DiV~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 229 (470)
||+.+. |++.... ..+..++ +.+....+-+.. ..-...++..+.++.........+. .+|..+
T Consensus 85 pdv~i~~~s~~l~r---vafgLg~-----psIi~~D~ehA~---~qnkl~~Pla~~ii~P~~~~~~~~~-----~~G~~p 148 (346)
T COG1817 85 PDVAIGKHSPELPR---VAFGLGI-----PSIIFVDNEHAE---AQNKLTLPLADVIITPEAIDEEELL-----DFGADP 148 (346)
T ss_pred CceEeecCCcchhh---HHhhcCC-----ceEEecCChhHH---HHhhcchhhhhheecccccchHHHH-----HhCCCc
Confidence 999987 4333222 1122222 333322221111 1123334555556555554433322 456554
Q ss_pred CceEEEecCCch----hhhhHhhhHHHHHHHHHHHHHHcCCCCCC-eEEEEEe-----ecccCCCHHHHHHHHHHHHHHH
Q 012132 230 PDTYVVHLGNSK----ELMEVAEDNVAKRVLREHVRESLGVRNED-LLFAIIN-----SVSRGKGQDLFLHSFYESLELI 299 (470)
Q Consensus 230 ~~i~vi~ngvd~----~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~i~~vG-----rl~~~Kg~~~ll~a~~~l~~~l 299 (470)
.+ .+-+||+.. ..|.|+ .++-+++|+..+. ++++=.- -....++++.+.+++..+.
T Consensus 149 ~~-i~~~~giae~~~v~~f~pd----------~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~--- 214 (346)
T COG1817 149 NK-ISGYNGIAELANVYGFVPD----------PEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELK--- 214 (346)
T ss_pred cc-eecccceeEEeecccCCCC----------HHHHHHcCCCCCCceEEEeeccccceeeccccchhhHHHHHHHHH---
Confidence 44 233444432 124443 3467789998764 4333111 1223456666666666652
Q ss_pred HhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHH
Q 012132 300 KEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM 379 (470)
Q Consensus 300 ~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAm 379 (470)
+.-.+++-.. ...++..+.+ ++++..-...|-.+++--|++++ .+ -|.-.-||.
T Consensus 215 --------k~giV~ipr~--------~~~~eife~~---~n~i~pk~~vD~l~Llyya~lvi------g~-ggTMarEaA 268 (346)
T COG1817 215 --------KYGIVLIPRE--------KEQAEIFEGY---RNIIIPKKAVDTLSLLYYATLVI------GA-GGTMAREAA 268 (346)
T ss_pred --------hCcEEEecCc--------hhHHHHHhhh---ccccCCcccccHHHHHhhhheee------cC-CchHHHHHH
Confidence 2335555443 2223333333 23333334456566788888887 22 266678999
Q ss_pred hcCCCEEecCCC---CcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHH
Q 012132 380 AFQLPVLGTAAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 428 (470)
Q Consensus 380 a~G~PvI~s~~~---g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~ 428 (470)
..|+|.|.+.-| +..+.. -+.|.++...| +.+..+...+++.++.
T Consensus 269 lLGtpaIs~~pGkll~vdk~l--ie~G~~~~s~~--~~~~~~~a~~~l~~~~ 316 (346)
T COG1817 269 LLGTPAISCYPGKLLAVDKYL--IEKGLLYHSTD--EIAIVEYAVRNLKYRR 316 (346)
T ss_pred HhCCceEEecCCccccccHHH--HhcCceeecCC--HHHHHHHHHHHhhchh
Confidence 999999999844 233333 25789999888 6676676667666553
No 132
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=98.38 E-value=0.00041 Score=63.66 Aligned_cols=269 Identities=10% Similarity=0.020 Sum_probs=146.7
Q ss_pred hhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchh----hh----hc-ccccccceeeeehhhHHHH
Q 012132 147 TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL----DY----VK-HLPLVAGAMIDSHVTAEYW 217 (470)
Q Consensus 147 ~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~----~~----~~-~~~~~~~~~~~s~~~~~~~ 217 (470)
+..+.+-+++|..........++..+++ ..++.|.+.+..-..... .. ++ ...++..++ ....--.++
T Consensus 75 ~~~r~~kff~HGqFn~~lwlaLl~g~~~--~~k~~WhIWGaDLYe~~~~~k~rlfy~lRr~aq~rvg~V~-at~GDl~~~ 151 (360)
T PF07429_consen 75 KADRADKFFLHGQFNPWLWLALLFGKIK--LKKCYWHIWGADLYEDSRSLKFRLFYFLRRLAQKRVGHVF-ATRGDLAYF 151 (360)
T ss_pred hhCccceEEEeccCcHHHHHHHHcCCcc--ccceEEEEeCchhhccccccchhHHHHHHHHHHhhcCeEE-EEcchHHHH
Confidence 3468889999986643333333332222 245666666532111111 11 11 112333333 233333444
Q ss_pred HHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEee-cccCCCHHHHHHHHHHHH
Q 012132 218 KNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS-VSRGKGQDLFLHSFYESL 296 (470)
Q Consensus 218 ~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGr-l~~~Kg~~~ll~a~~~l~ 296 (470)
++ +++..+......|+-++......... ....++..|+ +|+ -++.-++-.+++++.+..
T Consensus 152 ~q----~~~~~~~~~lyfPt~m~~~~~~~~~~---------------~~~~~~ltIL-vGNSgd~sNnHieaL~~L~~~~ 211 (360)
T PF07429_consen 152 QQ----RYPRVPASLLYFPTRMDPALTLSEKN---------------KKNKGKLTIL-VGNSGDPSNNHIEALEALKQQF 211 (360)
T ss_pred HH----HcCCCCceEEEcCCCCchhhhccccc---------------cCCCCceEEE-EcCCCCCCccHHHHHHHHHHhc
Confidence 44 44433334555555555543221110 1113445554 554 467778888888776542
Q ss_pred HHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEec-c--cCCHHHHHHhcCEEEEccCCcccccch
Q 012132 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN-K--TLTVAPYLAAIDVLVQNSQAWGECFGR 373 (470)
Q Consensus 297 ~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g-~--~~~~~~~~~~aDv~v~pS~~~~E~~g~ 373 (470)
..++++++-=+-+.....|.+++++.++++--.+++..+- + -+|..++++.||+.+++.. +.+|.|+
T Consensus 212 ---------~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~-RQQgiGn 281 (360)
T PF07429_consen 212 ---------GDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLSRCDLGIFNHN-RQQGIGN 281 (360)
T ss_pred ---------CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEeec-hhhhHhH
Confidence 2567766643322222358888888888875556787665 3 2888999999999999987 6899997
Q ss_pred HHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHH
Q 012132 374 ITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAER 453 (470)
Q Consensus 374 ~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~ 453 (470)
.++ .+.+|+||+.+.....-..+.+...-+++..++-+...+.++=.++.. .-++.+ .|...+..+.
T Consensus 282 I~l-Ll~~G~~v~L~~~np~~~~l~~~~ipVlf~~d~L~~~~v~ea~rql~~----------~dk~~i--aFf~pny~~~ 348 (360)
T PF07429_consen 282 ICL-LLQLGKKVFLSRDNPFWQDLKEQGIPVLFYGDELDEALVREAQRQLAN----------VDKQQI--AFFAPNYLQG 348 (360)
T ss_pred HHH-HHHcCCeEEEecCChHHHHHHhCCCeEEeccccCCHHHHHHHHHHHhh----------Ccccce--eeeCCchHHH
Confidence 655 999999999987655444443332234444333334444444333332 111111 2666777777
Q ss_pred HHHHHHHH
Q 012132 454 IAVVLKEV 461 (470)
Q Consensus 454 ~~~~~~~~ 461 (470)
|...+...
T Consensus 349 w~~~l~~~ 356 (360)
T PF07429_consen 349 WRQALRLA 356 (360)
T ss_pred HHHHHHHH
Confidence 76666544
No 133
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.27 E-value=0.00013 Score=71.09 Aligned_cols=346 Identities=14% Similarity=0.120 Sum_probs=194.9
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhC-CceEEEEecCCCCCchhHHHhhhhhhhhcceee-----EecCChhhHH
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-----ISAKGQETIN 146 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 146 (470)
.+.+|..|++++...-. .++.+-.-++.++ .++|.+++........ +..++...+-.+ ++........
T Consensus 581 ~rlrIGYvSsDFgnHp~-Shlmqsv~gmHdr~kveVfcYals~~d~t~-----fR~kv~~e~ehf~Dls~i~~~kiA~~I 654 (966)
T KOG4626|consen 581 GRLRIGYVSSDFGNHPT-SHLMQSVPGMHDRSKVEVFCYALSVNDGTN-----FRDKVMKEAEHFVDLSQIPCNKIADKI 654 (966)
T ss_pred CceEEEeecccccCCch-HHHhccCcCcCCccceEEEEEEeecCCCch-----HHHHHHhhccceeehhcCChHHHHHHH
Confidence 56799999999843221 2333334444443 3566666532222111 122222222222 3334444555
Q ss_pred hhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhhc
Q 012132 147 TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLR 226 (470)
Q Consensus 147 ~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 226 (470)
...+++|.+--+.....--.-.+. ..| .|+-..+-++-+ .......+.+++++.+.--.+.+...+++-
T Consensus 655 ~qD~I~ILvnlnGyTkgarneifA-lrP---APIQv~wlGyPg-------TtGa~~mDYiITDs~tsPl~~a~~ysEkLv 723 (966)
T KOG4626|consen 655 RQDKIHILVNLNGYTKGARNEIFA-LRP---APIQVMWLGYPG-------TTGATFMDYIITDSVTSPLELAQQYSEKLV 723 (966)
T ss_pred hhcCceEEEeccccccccccceee-ccC---CceeEEeecCCC-------CCCCceeeEEeecccCChHHHHHHHHHHHh
Confidence 667788777554332111000000 001 122222222111 112345677888877766555555444443
Q ss_pred cCCCceEEEecCCchh--hhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcc
Q 012132 227 IKMPDTYVVHLGNSKE--LMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKL 304 (470)
Q Consensus 227 ~~~~~i~vi~ngvd~~--~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~ 304 (470)
. .+....|...-... ...|.. .-.|..+++|++.+++..+..+ +|=-...++.+.++++
T Consensus 724 ~-lPh~ffi~d~~qk~~~~~dpn~---------kP~r~~y~Lp~d~vvf~~FNqL--yKidP~~l~~W~~ILk------- 784 (966)
T KOG4626|consen 724 Y-LPHCFFIGDHKQKNQDVLDPNN---------KPTRSQYGLPEDAVVFCNFNQL--YKIDPSTLQMWANILK------- 784 (966)
T ss_pred h-CCceEEecCcccccccccCCCC---------CCCCCCCCCCCCeEEEeechhh--hcCCHHHHHHHHHHHH-------
Confidence 2 23344444332211 111111 1257789999898877666654 4555678888888876
Q ss_pred cCCceEEEEEeCCCCcChHHHHHHHHHHHhcCC-CCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhc
Q 012132 305 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI-QDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAF 381 (470)
Q Consensus 305 ~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l-~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~ 381 (470)
+.|+..|++.--..- -++.++..++++|+ +++|.|..-. +|=..-++.+|+++-+-. ..| -.+-+|.+.+
T Consensus 785 ~VPnS~LwllrfPa~----ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaDv~LDTpl--cnG-hTTg~dvLw~ 857 (966)
T KOG4626|consen 785 RVPNSVLWLLRFPAV----GEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLADVCLDTPL--CNG-HTTGMDVLWA 857 (966)
T ss_pred hCCcceeEEEecccc----chHHHHHHHHHhCCCccceeeccccchHHHHHhhhhhhhcccCcC--cCC-cccchhhhcc
Confidence 569988888765321 25788999999999 4678887742 555566788999886544 222 3566799999
Q ss_pred CCCEEecCCCCcce-----eeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHH--HHcChhHHHHHH
Q 012132 382 QLPVLGTAAGGTTE-----IVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK--EIFQEHHMAERI 454 (470)
Q Consensus 382 G~PvI~s~~~g~~e-----~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~--~~fs~~~~~~~~ 454 (470)
|+|+|+-...-... .+..-+.|-++..+ -++..+.-.+|-.|.+..+.+...-++.-. -.|+-..++..+
T Consensus 858 GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak~---~eEY~~iaV~Latd~~~L~~lr~~l~~~r~~splfd~~q~~~~L 934 (966)
T KOG4626|consen 858 GVPMVTMPGETLASRVAASLLTALGLGHLIAKN---REEYVQIAVRLATDKEYLKKLRAKLRKARASSPLFDTKQYAKGL 934 (966)
T ss_pred CCceeecccHHHHHHHHHHHHHHcccHHHHhhh---HHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCccCchHHHHHH
Confidence 99999753211110 11111233333332 678888888888888877777666554332 248899999999
Q ss_pred HHHHHHHHHh
Q 012132 455 AVVLKEVLKK 464 (470)
Q Consensus 455 ~~~~~~~l~~ 464 (470)
+++|.+...+
T Consensus 935 E~~y~~MW~~ 944 (966)
T KOG4626|consen 935 ERLYLQMWKK 944 (966)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 134
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=98.27 E-value=0.00011 Score=66.89 Aligned_cols=142 Identities=13% Similarity=0.119 Sum_probs=85.6
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc
Q 012132 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~ 347 (470)
+...+++.+|. ..-|-+++-.++ +....+.+ .+..-++|.|..++. ...+.+...+. -.++|++..+.
T Consensus 218 E~~~Ilvs~GG--G~dG~eLi~~~l-~A~~~l~~----l~~~~~ivtGP~MP~--~~r~~l~~~A~---~~p~i~I~~f~ 285 (400)
T COG4671 218 EGFDILVSVGG--GADGAELIETAL-AAAQLLAG----LNHKWLIVTGPFMPE--AQRQKLLASAP---KRPHISIFEFR 285 (400)
T ss_pred ccceEEEecCC--ChhhHHHHHHHH-HHhhhCCC----CCcceEEEeCCCCCH--HHHHHHHHhcc---cCCCeEEEEhh
Confidence 45677777773 344544444333 33222211 011246777776543 23444444443 33689999999
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcc-eeeec----Cceee--eecCCCCChHHHHHHH
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTT-EIVVN----GTTGL--LHPVGKEGITPLAKNI 420 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~-e~v~~----~~~G~--l~~~~d~~~~~la~~i 420 (470)
+++..+++.|+..|.-+ -=+++.|-+++|||.+.-....-+ |.... .+-|+ +..+.+.+++.|+++|
T Consensus 286 ~~~~~ll~gA~~vVSm~------GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al 359 (400)
T COG4671 286 NDFESLLAGARLVVSMG------GYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADAL 359 (400)
T ss_pred hhHHHHHHhhheeeecc------cchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHH
Confidence 99999999999999333 236899999999998876543222 22110 12222 2334444589999999
Q ss_pred HHHHhCH
Q 012132 421 VKLATHV 427 (470)
Q Consensus 421 ~~ll~~~ 427 (470)
..+++.|
T Consensus 360 ~~~l~~P 366 (400)
T COG4671 360 KAALARP 366 (400)
T ss_pred HhcccCC
Confidence 9998743
No 135
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.26 E-value=9.3e-05 Score=69.06 Aligned_cols=112 Identities=17% Similarity=0.204 Sum_probs=80.2
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCc----ceeeecC-ceeeeec-----CCCCChHHHH
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT----TEIVVNG-TTGLLHP-----VGKEGITPLA 417 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~----~e~v~~~-~~G~l~~-----~~d~~~~~la 417 (470)
-|..++.+.|.+.|+||. +|++|.+..|.-.+|+|-|+|+..|. .|.|.+. ..|+.+- ..|+++++|+
T Consensus 492 lDYeeFVRGCHLGVFPSY--YEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~ 569 (692)
T KOG3742|consen 492 LDYEEFVRGCHLGVFPSY--YEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLA 569 (692)
T ss_pred CCHHHHhccccccccccc--cCCCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecccCChhhHHHHHH
Confidence 467788999999999999 99999999999999999999998774 4445442 3454432 2233477788
Q ss_pred HHHHHHHhCHHHHHHHHH-HHHHHHHHHcChhHHHHHHHHHHHHHH
Q 012132 418 KNIVKLATHVERRLTMGK-RGYERVKEIFQEHHMAERIAVVLKEVL 462 (470)
Q Consensus 418 ~~i~~ll~~~~~~~~~~~-~a~~~~~~~fs~~~~~~~~~~~~~~~l 462 (470)
+-|...... ..|+++.+ +.-++.....+|..+...|.+.=.-.+
T Consensus 570 ~~m~~F~~q-sRRQRIiqRNrtErLSdLLDWk~lG~~Y~~aR~laL 614 (692)
T KOG3742|consen 570 SFMYEFCKQ-SRRQRIIQRNRTERLSDLLDWKYLGRYYRKARHLAL 614 (692)
T ss_pred HHHHHHHHH-HHHHHHHHhcchhhHHHHHhHHHHhHHHHHHHHHHH
Confidence 877777654 33444444 445667777899998887776544444
No 136
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.25 E-value=9.1e-06 Score=66.61 Aligned_cols=96 Identities=22% Similarity=0.216 Sum_probs=61.6
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC-------------Ch
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-------------GQ 142 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~ 142 (470)
|||+++... +.+..++++.|.++||||++++...+... .....++.++... ..
T Consensus 1 KIl~i~~~~-----~~~~~~~~~~L~~~g~~V~ii~~~~~~~~---------~~~~~~i~~~~~~~~~k~~~~~~~~~~l 66 (139)
T PF13477_consen 1 KILLIGNTP-----STFIYNLAKELKKRGYDVHIITPRNDYEK---------YEIIEGIKVIRLPSPRKSPLNYIKYFRL 66 (139)
T ss_pred CEEEEecCc-----HHHHHHHHHHHHHCCCEEEEEEcCCCchh---------hhHhCCeEEEEecCCCCccHHHHHHHHH
Confidence 688888755 35789999999999999999997544311 1112333333222 23
Q ss_pred hhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeee
Q 012132 143 ETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEM 187 (470)
Q Consensus 143 ~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 187 (470)
.++.+..+||+||+|.+.....+..+.+.... .+|++++.|+.
T Consensus 67 ~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~--~~~~i~~~hg~ 109 (139)
T PF13477_consen 67 RKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLK--NKKVIYTVHGS 109 (139)
T ss_pred HHHhccCCCCEEEEecCChHHHHHHHHHHHcC--CCCEEEEecCC
Confidence 45566789999999997654333433332221 14788999964
No 137
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=98.17 E-value=0.0062 Score=59.49 Aligned_cols=329 Identities=13% Similarity=0.077 Sum_probs=158.8
Q ss_pred cEEEEEeeccC-CCchhHHHHHHHHHHHhCC--ceEEEEecCCCCCchhHH---------------Hh-------hhhhh
Q 012132 75 KLVLLVSHELS-LSGGPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEVI---------------YS-------LEHKM 129 (470)
Q Consensus 75 ~kIl~v~~~~~-~~G~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~---------------~~-------~~~~~ 129 (470)
|||+++..+.. ..|.+-.+..++..|++.. .+++|++..+........ +. .....
T Consensus 1 ~~i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v~S~~P~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 80 (426)
T PRK10017 1 MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPVSSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVKKVL 80 (426)
T ss_pred CeEEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEEEEecCccchhhhcccccccchhhhhhhhcccccccchhHHHHH
Confidence 68999988754 5777899999999999875 678888865544220000 00 00000
Q ss_pred h-------------hcceee-Eec--CChhhHHhhcCCcEEEEcccch-----h--hhHHHHhhhcCCccccceeeEEee
Q 012132 130 W-------------DRGVQV-ISA--KGQETINTALKADLIVLNTAVA-----G--KWLDAVLKEDVPRVLPNVLWWIHE 186 (470)
Q Consensus 130 ~-------------~~~~~~-~~~--~~~~~~~~~~~~DiV~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~h~ 186 (470)
. ..|..- ... .....+..-.+.|+++.-.... + .+........ ..+|++.+-++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l---~gkpv~l~gqs 157 (426)
T PRK10017 81 RRRYQHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFM---AKKPLYMIGHS 157 (426)
T ss_pred HhhhhHHHHHhhhccccccccccchhhHHHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHH---cCCCEEEECCc
Confidence 0 000000 000 0001122345789998754211 0 0111111111 22466666666
Q ss_pred eccccchhh----hhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHH-HHHHHHHHHH
Q 012132 187 MRGHYFKLD----YVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNV-AKRVLREHVR 261 (470)
Q Consensus 187 ~~~~~~~~~----~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~-~~~~~~~~~r 261 (470)
..+ +-... ....++.++. ++.-... ...+.+.+|++.+++.+.+ |+.+.-+..... .+ ...+.
T Consensus 158 iGP-f~~~~~r~l~r~vl~~~~~-ItvRD~~----S~~~Lk~lGv~~~~v~~~a---DpAF~L~~~~~~~~~---~~~~~ 225 (426)
T PRK10017 158 VGP-FQDEQFNQLANYVFGHCDA-LILRESV----SLDLMKRSNITTAKVEHGV---DTAWLVDHHTEDFTA---SYAVQ 225 (426)
T ss_pred CCC-cCCHHHHHHHHHHHhcCCE-EEEccHH----HHHHHHHhCCCccceEEec---ChhhhCCcccccccc---chhhh
Confidence 532 22221 2222333333 3333333 3333447788877777765 333322211000 00 00111
Q ss_pred HHcCCCCCCeEEEE-Eeeccc-CC----CHHHHHHHHHHHHHHHHhhcccCCceEEEEEeC--CCCc-ChHHHHHHHHHH
Q 012132 262 ESLGVRNEDLLFAI-INSVSR-GK----GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS--DMNA-QTKFESELRNYV 332 (470)
Q Consensus 262 ~~~~~~~~~~~i~~-vGrl~~-~K----g~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~--g~~~-~~~~~~~l~~~~ 332 (470)
..++...++.+|++ +..+.+ .| +.+...+.++++.+.+.+. +.+++++-. +.+. .+.+....+++.
T Consensus 226 ~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~-----g~~Vv~lp~~~~~~~~~~dD~~~~~~l~ 300 (426)
T PRK10017 226 HWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDE-----GYQVIALSTCTGIDSYNKDDRMVALNLR 300 (426)
T ss_pred hhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHC-----CCeEEEEecccCccCCCCchHHHHHHHH
Confidence 11222223334433 333322 12 1233445555555555432 334444332 1100 012333345555
Q ss_pred HhcCCCCcEEEec---ccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCC----CcceeeecCceeee
Q 012132 333 MQKKIQDRVHFVN---KTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIVVNGTTGLL 405 (470)
Q Consensus 333 ~~~~l~~~V~~~g---~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~----g~~e~v~~~~~G~l 405 (470)
+.+.-+.+++++. ...++..+++.+|++|-.-.+ .++=|++.|+|+|+-... +.-+.+ |...++
T Consensus 301 ~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~RlH-------a~I~a~~~gvP~i~i~Y~~K~~~~~~~l--g~~~~~ 371 (426)
T PRK10017 301 QHVSDPARYHVVMDELNDLEMGKILGACELTVGTRLH-------SAIISMNFGTPAIAINYEHKSAGIMQQL--GLPEMA 371 (426)
T ss_pred HhcccccceeEecCCCChHHHHHHHhhCCEEEEecch-------HHHHHHHcCCCEEEeeehHHHHHHHHHc--CCccEE
Confidence 5554444444433 135677899999998865542 577799999999987532 222333 223344
Q ss_pred ecCCCCChHHHHHHHHHHHhCHHHHHH
Q 012132 406 HPVGKEGITPLAKNIVKLATHVERRLT 432 (470)
Q Consensus 406 ~~~~d~~~~~la~~i~~ll~~~~~~~~ 432 (470)
++..+.+.++|.+.+.+++++.+..++
T Consensus 372 ~~~~~l~~~~Li~~v~~~~~~r~~~~~ 398 (426)
T PRK10017 372 IDIRHLLDGSLQAMVADTLGQLPALNA 398 (426)
T ss_pred echhhCCHHHHHHHHHHHHhCHHHHHH
Confidence 555444478999999999998665443
No 138
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=97.99 E-value=7.2e-05 Score=75.70 Aligned_cols=143 Identities=22% Similarity=0.196 Sum_probs=107.8
Q ss_pred CCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChH---HHHHHHHHHHhcCCCCcEE
Q 012132 266 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK---FESELRNYVMQKKIQDRVH 342 (470)
Q Consensus 266 ~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~---~~~~l~~~~~~~~l~~~V~ 342 (470)
++++.+.++++-|+..+|...+.+.-...+...+++. ..|.+.+++.|...|.... .-..+...++..+...+|.
T Consensus 483 ~~p~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d--~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVv 560 (750)
T COG0058 483 VDPNALFDGQARRIHEYKRQLLNLLDIERLYRILKED--WVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVV 560 (750)
T ss_pred cCCCcceeeeehhhhhhhhhHHhHhhHHHHHHHHhcC--CCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEE
Confidence 3466788999999999999888887777777776632 4577888888876554321 2223333444433345688
Q ss_pred Eecc-cCCH-HHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeee--cCceeeeecCCC
Q 012132 343 FVNK-TLTV-APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVV--NGTTGLLHPVGK 410 (470)
Q Consensus 343 ~~g~-~~~~-~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~--~~~~G~l~~~~d 410 (470)
|+.. .-.+ ..++.++|+-...|+...|..|.+-+-+|..|.+-|+|--|...|+.+ +++||++|....
T Consensus 561 Fl~nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~vg~~N~~~fG~~~ 632 (750)
T COG0058 561 FLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFGETV 632 (750)
T ss_pred EeCCCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHhcCCCceEEeCCch
Confidence 8874 3344 455899999999888779999999999999999999999999999886 889999998764
No 139
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=97.94 E-value=4.7e-06 Score=70.71 Aligned_cols=92 Identities=18% Similarity=0.200 Sum_probs=65.1
Q ss_pred CcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC--------cceeeecCceeeeecCCC
Q 012132 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG--------TTEIVVNGTTGLLHPVGK 410 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g--------~~e~v~~~~~G~l~~~~d 410 (470)
.+|.+.++.+++.++|+.||++| .-+-+.++.|++++|+|.|.-...+ ....+.+...|..+...+
T Consensus 55 ~~v~~~~~~~~m~~~m~~aDlvI------s~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~ 128 (167)
T PF04101_consen 55 PNVKVFGFVDNMAELMAAADLVI------SHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESE 128 (167)
T ss_dssp CCCEEECSSSSHHHHHHHHSEEE------ECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC
T ss_pred CcEEEEechhhHHHHHHHcCEEE------eCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCccc
Confidence 58999999999999999999998 3344689999999999998766554 122233444566666555
Q ss_pred CChHHHHHHHHHHHhCHHHHHHHHHH
Q 012132 411 EGITPLAKNIVKLATHVERRLTMGKR 436 (470)
Q Consensus 411 ~~~~~la~~i~~ll~~~~~~~~~~~~ 436 (470)
.+++.|.++|.++++++..+..+.++
T Consensus 129 ~~~~~L~~~i~~l~~~~~~~~~~~~~ 154 (167)
T PF04101_consen 129 LNPEELAEAIEELLSDPEKLKEMAKA 154 (167)
T ss_dssp -SCCCHHHHHHCHCCCHH-SHHHCCC
T ss_pred CCHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 44789999999999998876665544
No 140
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=97.93 E-value=0.0002 Score=71.79 Aligned_cols=139 Identities=15% Similarity=0.100 Sum_probs=91.5
Q ss_pred CCeEEEEEeecccC-----CCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEE
Q 012132 269 EDLLFAIINSVSRG-----KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHF 343 (470)
Q Consensus 269 ~~~~i~~vGrl~~~-----Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~ 343 (470)
...+++..|..... +-...+++|++++ + .++++..++. ... .++++||.+
T Consensus 296 ~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l-----------~-~~viw~~~~~-----~~~--------~~~p~Nv~i 350 (507)
T PHA03392 296 NGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKL-----------P-YNVLWKYDGE-----VEA--------INLPANVLT 350 (507)
T ss_pred CcEEEEECCCCCcCCCCCHHHHHHHHHHHHhC-----------C-CeEEEEECCC-----cCc--------ccCCCceEE
Confidence 34777778876432 2234555555433 4 4666655531 110 245689999
Q ss_pred ecccCCHHHHH--HhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHH
Q 012132 344 VNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLA 417 (470)
Q Consensus 344 ~g~~~~~~~~~--~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la 417 (470)
.++..+ .+++ ..+++|| .-|-..++.||+.+|+|+|+-...+ ....+...+.|...+..+.+.+++.
T Consensus 351 ~~w~Pq-~~lL~hp~v~~fI------tHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~ 423 (507)
T PHA03392 351 QKWFPQ-RAVLKHKNVKAFV------TQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLV 423 (507)
T ss_pred ecCCCH-HHHhcCCCCCEEE------ecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCHHHHH
Confidence 998643 5677 4589999 4555678999999999999986543 3333445567888776655589999
Q ss_pred HHHHHHHhCHHHHHHHHHHHHH
Q 012132 418 KNIVKLATHVERRLTMGKRGYE 439 (470)
Q Consensus 418 ~~i~~ll~~~~~~~~~~~~a~~ 439 (470)
++|.++++|+..+++..+-++.
T Consensus 424 ~ai~~vl~~~~y~~~a~~ls~~ 445 (507)
T PHA03392 424 LAIVDVIENPKYRKNLKELRHL 445 (507)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999998766655444333
No 141
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=97.85 E-value=3.4e-05 Score=69.66 Aligned_cols=39 Identities=23% Similarity=0.181 Sum_probs=31.5
Q ss_pred EEEEEeeccCC----CchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 76 LVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 76 kIl~v~~~~~~----~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
|||+++.+++| ||-+.++..|+++|+++||+|.|+++..
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 79999999776 5669999999999999999999999765
No 142
>PRK14986 glycogen phosphorylase; Provisional
Probab=97.66 E-value=0.00095 Score=68.73 Aligned_cols=154 Identities=16% Similarity=0.153 Sum_probs=110.2
Q ss_pred HHHcC--CCCCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhc--
Q 012132 261 RESLG--VRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK-- 335 (470)
Q Consensus 261 r~~~~--~~~~~~~i~~vGrl~~~Kg~~~-ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~-- 335 (470)
+++.| ++++.+.++++-|+..+|...+ ++..+..+.+...+...+.....+++.|...|+.. ....+.+++...
T Consensus 532 ~~~~g~~ldp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIk~I~~va~ 610 (815)
T PRK14986 532 AQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYY-MAKHIIHLINDVAK 610 (815)
T ss_pred HHHhCCccCcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcH-HHHHHHHHHHHHHH
Confidence 34445 4566788899999999999999 88887777654433111123478888887665543 333333333222
Q ss_pred ------CCCC--cEEEecc-c-CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeec--Ccee
Q 012132 336 ------KIQD--RVHFVNK-T-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--GTTG 403 (470)
Q Consensus 336 ------~l~~--~V~~~g~-~-~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~--~~~G 403 (470)
.+.+ +|.|+.. . +--..++.++|+-...|+...|..|..=+-+|..|.+.++|--|...|+.++ ++||
T Consensus 611 ~in~Dp~v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG~eN~ 690 (815)
T PRK14986 611 VINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENI 690 (815)
T ss_pred HhccChhhcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhcCCCcE
Confidence 2233 6888874 3 4445568999999998887799999999999999999999999999998875 8899
Q ss_pred eeecCCCCChHHHHH
Q 012132 404 LLHPVGKEGITPLAK 418 (470)
Q Consensus 404 ~l~~~~d~~~~~la~ 418 (470)
+++... .++..+
T Consensus 691 ~~fG~~---~~ev~~ 702 (815)
T PRK14986 691 FIFGNT---AEEVEA 702 (815)
T ss_pred EEeCCC---HHHHHH
Confidence 999765 444444
No 143
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=97.57 E-value=0.0024 Score=64.92 Aligned_cols=153 Identities=15% Similarity=0.163 Sum_probs=94.1
Q ss_pred HHHcC--CCCCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhc--
Q 012132 261 RESLG--VRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK-- 335 (470)
Q Consensus 261 r~~~~--~~~~~~~i~~vGrl~~~Kg~~~-ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~-- 335 (470)
++..| ++++.+..+++-|+..+|...+ ++..+....+.......+...+.+++.|...|+.. ...++.+++.+.
T Consensus 433 ~~~~~~~ldp~slfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~-~gK~iIk~I~~va~ 511 (713)
T PF00343_consen 433 KKRTGVELDPDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDY-MGKEIIKLINNVAE 511 (713)
T ss_dssp HHHHSS---TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-H-HHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcchhhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcH-HHHHHHHHHHHHHH
Confidence 34445 4677788899999999999888 55666555443332111233578999998665543 334444444322
Q ss_pred ------CCCC--cEEEecc-c-CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeec--Ccee
Q 012132 336 ------KIQD--RVHFVNK-T-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--GTTG 403 (470)
Q Consensus 336 ------~l~~--~V~~~g~-~-~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~--~~~G 403 (470)
.+.+ +|.|+.. . +--..++.++|+-...|+...|..|..-+-+|..|.+.+++--|...|+.+. .++.
T Consensus 512 ~in~Dp~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG~eN~ 591 (713)
T PF00343_consen 512 VINNDPEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVGEENI 591 (713)
T ss_dssp HHCT-TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-GGGS
T ss_pred HHhcChhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcCCCcE
Confidence 2334 6888875 3 4445568999999998887799999999999999999999998998888653 4678
Q ss_pred eeecCCCCChHHHH
Q 012132 404 LLHPVGKEGITPLA 417 (470)
Q Consensus 404 ~l~~~~d~~~~~la 417 (470)
++|-.. .+++.
T Consensus 592 fiFG~~---~~ev~ 602 (713)
T PF00343_consen 592 FIFGLT---AEEVE 602 (713)
T ss_dssp EEES-B---HHHHH
T ss_pred EEcCCC---HHHHH
Confidence 888654 45543
No 144
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=97.55 E-value=0.00057 Score=70.13 Aligned_cols=155 Identities=17% Similarity=0.191 Sum_probs=111.6
Q ss_pred HHHHcCC--CCCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcC
Q 012132 260 VRESLGV--RNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK 336 (470)
Q Consensus 260 ~r~~~~~--~~~~~~i~~vGrl~~~Kg~~~-ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~ 336 (470)
++++.|+ +++.+..+++-|+..+|...+ ++..+..+.+...+.........+++.|...|+.. ....+.+++....
T Consensus 515 i~~~~g~~ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIklI~~va 593 (794)
T TIGR02093 515 IKEHTGVEVDPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYH-MAKLIIKLINSVA 593 (794)
T ss_pred HHHhcCCccCccccchhhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcH-HHHHHHHHHHHHH
Confidence 3445554 566788889999999999999 88887777654433111112467888887655443 4445555554433
Q ss_pred --------CCC--cEEEecc--cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeec--Cce
Q 012132 337 --------IQD--RVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--GTT 402 (470)
Q Consensus 337 --------l~~--~V~~~g~--~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~--~~~ 402 (470)
+.+ +|.|+.. ++--..++.+||+-...|+...|..|..=+-+|..|.+.++|--|...|+.++ ++|
T Consensus 594 ~~iN~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~vG~eN 673 (794)
T TIGR02093 594 EVVNNDPAVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREEVGAEN 673 (794)
T ss_pred HHhccChhhCCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHHhCccc
Confidence 344 6888874 34455678999999998887799999999999999999999998998888776 789
Q ss_pred eeeecCCCCChHHHHH
Q 012132 403 GLLHPVGKEGITPLAK 418 (470)
Q Consensus 403 G~l~~~~d~~~~~la~ 418 (470)
+++|-.. .++..+
T Consensus 674 ~fiFG~~---~~ev~~ 686 (794)
T TIGR02093 674 IFIFGLT---VEEVEA 686 (794)
T ss_pred EEEcCCC---HHHHHH
Confidence 9999765 444443
No 145
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.54 E-value=0.001 Score=68.53 Aligned_cols=148 Identities=17% Similarity=0.162 Sum_probs=107.3
Q ss_pred HHHcC--CCCCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcC-
Q 012132 261 RESLG--VRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK- 336 (470)
Q Consensus 261 r~~~~--~~~~~~~i~~vGrl~~~Kg~~~-ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~- 336 (470)
+++.| ++++.+..+++-|+..+|...+ ++..+....+...+.........+++.|...|+.. ....+.+++....
T Consensus 519 ~~~~g~~ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIklI~~va~ 597 (797)
T cd04300 519 KKTTGVEVDPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYY-MAKLIIKLINAVAD 597 (797)
T ss_pred HHHhCCccCCCccEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcH-HHHHHHHHHHHHHH
Confidence 44445 4567788999999999999999 88887776554433111112377888887655443 3344444443321
Q ss_pred -------CCC--cEEEecc--cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeec--Ccee
Q 012132 337 -------IQD--RVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--GTTG 403 (470)
Q Consensus 337 -------l~~--~V~~~g~--~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~--~~~G 403 (470)
+.+ +|.|+.. ++--..++.+||+-...|+...|..|..=+-+|..|.+.++|--|...|+.++ ++|+
T Consensus 598 ~in~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~vG~eN~ 677 (797)
T cd04300 598 VVNNDPDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENI 677 (797)
T ss_pred HhccChhcCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHHhCcCcE
Confidence 334 6888874 34455668999999998887799999999999999999999999998888776 7899
Q ss_pred eeecCC
Q 012132 404 LLHPVG 409 (470)
Q Consensus 404 ~l~~~~ 409 (470)
++|-..
T Consensus 678 fiFG~~ 683 (797)
T cd04300 678 FIFGLT 683 (797)
T ss_pred EEeCCC
Confidence 999765
No 146
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=97.32 E-value=0.0012 Score=67.69 Aligned_cols=148 Identities=16% Similarity=0.130 Sum_probs=106.8
Q ss_pred HHHcC--CCCCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcC-
Q 012132 261 RESLG--VRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK- 336 (470)
Q Consensus 261 r~~~~--~~~~~~~i~~vGrl~~~Kg~~~-ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~- 336 (470)
+++.| ++++.+.++++-|+..+|...+ ++..+..+.+...+.........+++.|...|+.. ....+.+++....
T Consensus 518 ~~~~g~~ldp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIklI~~va~ 596 (798)
T PRK14985 518 KQRTGIEINPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYY-LAKNIIFAINKVAE 596 (798)
T ss_pred HHHhCCccCchhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcH-HHHHHHHHHHHHHH
Confidence 34445 4566788889999999999999 88888777654433111112378888887655443 3344444443322
Q ss_pred -------CCC--cEEEecc--cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeec--Ccee
Q 012132 337 -------IQD--RVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--GTTG 403 (470)
Q Consensus 337 -------l~~--~V~~~g~--~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~--~~~G 403 (470)
+.+ +|.|+.. ++--..++.++|+....|+...|..|..=+-+|..|.+.++|--|...|+.++ ++||
T Consensus 597 ~in~Dp~v~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~vG~eN~ 676 (798)
T PRK14985 597 VINNDPLVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENI 676 (798)
T ss_pred HhcCChhhCCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHHhCcCcE
Confidence 223 6888874 34455668999999998887799999999999999999999999998888765 7899
Q ss_pred eeecCC
Q 012132 404 LLHPVG 409 (470)
Q Consensus 404 ~l~~~~ 409 (470)
+++-..
T Consensus 677 f~fG~~ 682 (798)
T PRK14985 677 FIFGHT 682 (798)
T ss_pred EEeCCC
Confidence 999765
No 147
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=97.12 E-value=0.034 Score=57.50 Aligned_cols=189 Identities=16% Similarity=0.062 Sum_probs=131.4
Q ss_pred ceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceE
Q 012132 231 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVH 310 (470)
Q Consensus 231 ~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~ 310 (470)
.+..+|-|+|...|..............+++..+ .++.+++-+-|+...||+..=+.++.++.....+ -.+++.
T Consensus 240 ~v~~~pigid~~r~v~~~~~~~~~~~~~ei~~~~---~g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe---~~~kVv 313 (732)
T KOG1050|consen 240 SVKALPIGIDVQRFVKLLELPYVGSKGMEIKEPF---KGKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPE---WIDKVV 313 (732)
T ss_pred eeeecccccchHHhhccccchhHHHHHHHHhhhc---cCCceEecccccccccCchHHHHHHHHHHHhChh---hhceEE
Confidence 4667888999988876544433333455565554 4677788888999999999999999998775544 224566
Q ss_pred EEEEeCCCCcChHHHHHHHHHHHh--------cCC--CCcEEEecc---cCCHHHHHHhcCEEEEccCCcccccchHHHH
Q 012132 311 AVIIGSDMNAQTKFESELRNYVMQ--------KKI--QDRVHFVNK---TLTVAPYLAAIDVLVQNSQAWGECFGRITIE 377 (470)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~--------~~l--~~~V~~~g~---~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lE 377 (470)
++.+..+...+.+..++++..+.. .+- ...|+++-. ..++.+++..+|+++..+. .+|..++.+|
T Consensus 314 liqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~--rdGmnl~~~e 391 (732)
T KOG1050|consen 314 LIQIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSW--RDGMNLVFLE 391 (732)
T ss_pred EEEEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeeccc--ccccchhhhH
Confidence 666665543333322333333221 111 123444432 2788899999999999998 9999999999
Q ss_pred HHhcC----CCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHH
Q 012132 378 AMAFQ----LPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRL 431 (470)
Q Consensus 378 Ama~G----~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~ 431 (470)
+.+|. .+.|.+..-|..+..++ ...++.+.| .++++..|...++.++.-.
T Consensus 392 ~i~~~~~~~~~lVlsef~G~~~tl~d--~aivvnpw~--~~~~~~~i~~al~~s~~e~ 445 (732)
T KOG1050|consen 392 YILCQENKKSVLVLSEFIGDDTTLED--AAIVVNPWD--GDEFAILISKALTMSDEER 445 (732)
T ss_pred HHHhhcccCCceEEeeeccccccccc--cCEEECCcc--hHHHHHHHHHHhhcCHHHH
Confidence 99885 67888887777777744 457888888 8999999999998654333
No 148
>PLN02670 transferase, transferring glycosyl groups
Probab=97.04 E-value=0.016 Score=57.47 Aligned_cols=115 Identities=12% Similarity=0.077 Sum_probs=68.9
Q ss_pred EEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCC----CC
Q 012132 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGK----EG 412 (470)
Q Consensus 341 V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d----~~ 412 (470)
+.+.+|..+ .++++..++..+-|. +--++++||+++|+|+|+-...+ ....+..-+.|+.+...+ .+
T Consensus 341 ~vv~~W~PQ-~~IL~H~~v~~FvtH----cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~ 415 (472)
T PLN02670 341 MIHVGWVPQ-VKILSHESVGGFLTH----CGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFT 415 (472)
T ss_pred eEEeCcCCH-HHHhcCcccceeeec----CCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCc
Confidence 666777654 357777666333333 33478999999999999975432 233333446676664311 23
Q ss_pred hHHHHHHHHHHHhCHHHHHHHHHHHHHH---HHHHcChhHHHHHHHHHHHHH
Q 012132 413 ITPLAKNIVKLATHVERRLTMGKRGYER---VKEIFQEHHMAERIAVVLKEV 461 (470)
Q Consensus 413 ~~~la~~i~~ll~~~~~~~~~~~~a~~~---~~~~fs~~~~~~~~~~~~~~~ 461 (470)
.+++.++|.+++.+++ -.++.+++++. +.+.=..+.+++.+++.+.+.
T Consensus 416 ~e~i~~av~~vm~~~~-g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 416 SDSVAESVRLAMVDDA-GEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLREN 466 (472)
T ss_pred HHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHh
Confidence 8999999999997742 22334444433 333334455555555555444
No 149
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=96.98 E-value=0.012 Score=59.48 Aligned_cols=138 Identities=15% Similarity=0.103 Sum_probs=81.1
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc
Q 012132 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~ 347 (470)
++..+++..|.+.. ...+..++++.+..+ +.|+ ++++.-++. .... +++|+....|.
T Consensus 275 ~~~vv~vsfGs~~~-~~~~~~~~~~~~~~~-------~~~~-~~iW~~~~~-----~~~~---------l~~n~~~~~W~ 331 (500)
T PF00201_consen 275 KKGVVYVSFGSIVS-SMPEEKLKEIAEAFE-------NLPQ-RFIWKYEGE-----PPEN---------LPKNVLIVKWL 331 (500)
T ss_dssp TTEEEEEE-TSSST-T-HHHHHHHHHHHHH-------CSTT-EEEEEETCS-----HGCH---------HHTTEEEESS-
T ss_pred CCCEEEEecCcccc-hhHHHHHHHHHHHHh-------hCCC-ccccccccc-----cccc---------ccceEEEeccc
Confidence 44577777888753 233443444444333 3365 666665541 1111 23578888886
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHHHHH
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 423 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~l 423 (470)
.+ .++++...+-++=+ -|--+++.||+.+|+|+|+-..-+ ....+++.+.|...+..+.+.+++.++|.++
T Consensus 332 PQ-~~lL~hp~v~~fit----HgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~v 406 (500)
T PF00201_consen 332 PQ-NDLLAHPRVKLFIT----HGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREV 406 (500)
T ss_dssp -H-HHHHTSTTEEEEEE----S--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHH
T ss_pred cc-hhhhhcccceeeee----ccccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHH
Confidence 54 47776655433333 344578999999999999986433 3444555567888887766689999999999
Q ss_pred HhCHHHHHHH
Q 012132 424 ATHVERRLTM 433 (470)
Q Consensus 424 l~~~~~~~~~ 433 (470)
++|+..+++.
T Consensus 407 l~~~~y~~~a 416 (500)
T PF00201_consen 407 LENPSYKENA 416 (500)
T ss_dssp HHSHHHHHHH
T ss_pred HhhhHHHHHH
Confidence 9998655443
No 150
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.96 E-value=0.16 Score=48.34 Aligned_cols=100 Identities=20% Similarity=0.217 Sum_probs=65.6
Q ss_pred CCeEEEEEe-ecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc
Q 012132 269 EDLLFAIIN-SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (470)
Q Consensus 269 ~~~~i~~vG-rl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~ 347 (470)
.+.+++..| .-...|... .+-++++.+.+.+ ...++++.|+. ...+..+++.+.++ +.+.+.|..
T Consensus 175 ~~~i~i~pg~s~~~~K~wp--~e~~~~l~~~l~~-----~~~~Vvl~g~~-----~e~e~~~~i~~~~~--~~~~l~~k~ 240 (334)
T COG0859 175 RPYIVINPGASRGSAKRWP--LEHYAELAELLIA-----KGYQVVLFGGP-----DEEERAEEIAKGLP--NAVILAGKT 240 (334)
T ss_pred CCeEEEeccccccccCCCC--HHHHHHHHHHHHH-----CCCEEEEecCh-----HHHHHHHHHHHhcC--CccccCCCC
Confidence 456677777 555777654 2334444444443 23788999986 35566666666553 223367754
Q ss_pred --CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecC
Q 012132 348 --LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389 (470)
Q Consensus 348 --~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~ 389 (470)
.++..+++.||++|.+.. |. +-=|.|.|+|+|+--
T Consensus 241 sL~e~~~li~~a~l~I~~DS------g~-~HlAaA~~~P~I~iy 277 (334)
T COG0859 241 SLEELAALIAGADLVIGNDS------GP-MHLAAALGTPTIALY 277 (334)
T ss_pred CHHHHHHHHhcCCEEEccCC------hH-HHHHHHcCCCEEEEE
Confidence 889999999999996654 33 334899999999864
No 151
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.96 E-value=0.034 Score=51.48 Aligned_cols=97 Identities=19% Similarity=0.154 Sum_probs=58.8
Q ss_pred EEEEEeecccCCC--HHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--
Q 012132 272 LFAIINSVSRGKG--QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-- 347 (470)
Q Consensus 272 ~i~~vGrl~~~Kg--~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~-- 347 (470)
+++..|.-.+.|. .+...+.++.+.+ .+++++++|+. +..+..+++.+..+-.+.+.+.|..
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~---------~~~~ivl~g~~-----~e~~~~~~i~~~~~~~~~~~~~~~~~l 189 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLA---------RGARVVLTGGP-----AERELAEEIAAALGGPRVVNLAGKTSL 189 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHH---------CCCEEEEEech-----hhHHHHHHHHHhcCCCccccCcCCCCH
Confidence 3334444344443 3455555555533 36888999875 2344455555544322334556653
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecC
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~ 389 (470)
.++..+++.||++|.+-. |..- -|.+.|+|+|+--
T Consensus 190 ~e~~~li~~~~l~I~~Ds------g~~H-lA~a~~~p~i~l~ 224 (279)
T cd03789 190 RELAALLARADLVVTNDS------GPMH-LAAALGTPTVALF 224 (279)
T ss_pred HHHHHHHHhCCEEEeeCC------HHHH-HHHHcCCCEEEEE
Confidence 788999999999996643 3333 4579999999764
No 152
>PLN02448 UDP-glycosyltransferase family protein
Probab=96.73 E-value=0.046 Score=54.42 Aligned_cols=95 Identities=18% Similarity=0.067 Sum_probs=57.9
Q ss_pred CcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecC-ceeeeecC-----
Q 012132 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNG-TTGLLHPV----- 408 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~-~~G~l~~~----- 408 (470)
+++.+.++..+ .++++..++..+=+ -+--++++||+++|+|+|+-...+ ....+.+. +.|+-+..
T Consensus 323 ~~~~v~~w~pQ-~~iL~h~~v~~fvt----HgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~ 397 (459)
T PLN02448 323 DMGLVVPWCDQ-LKVLCHSSVGGFWT----HCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEE 397 (459)
T ss_pred CCEEEeccCCH-HHHhccCccceEEe----cCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccC
Confidence 46777787643 45777777633323 334578999999999999976443 23333331 34555531
Q ss_pred CCCChHHHHHHHHHHHhCH-HHHHHHHHHHH
Q 012132 409 GKEGITPLAKNIVKLATHV-ERRLTMGKRGY 438 (470)
Q Consensus 409 ~d~~~~~la~~i~~ll~~~-~~~~~~~~~a~ 438 (470)
+..+.+++++++.+++.++ +.-+++.+++.
T Consensus 398 ~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~ 428 (459)
T PLN02448 398 TLVGREEIAELVKRFMDLESEEGKEMRRRAK 428 (459)
T ss_pred CcCcHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 1123799999999999864 33334444443
No 153
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=96.56 E-value=0.033 Score=55.00 Aligned_cols=91 Identities=18% Similarity=0.171 Sum_probs=57.1
Q ss_pred CcEEEecccCCHHHHHHhcCE--EEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecC-ceeeeecCCCC
Q 012132 339 DRVHFVNKTLTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNG-TTGLLHPVGKE 411 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv--~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~-~~G~l~~~~d~ 411 (470)
++..+.++..+ .++++..++ || + -+--++++||+++|+|+|+-...+ ....+.+. +.|+-+. ++.
T Consensus 324 ~~g~v~~w~PQ-~~iL~h~~v~~fv--t----H~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~-~~~ 395 (451)
T PLN02410 324 GRGYIVKWAPQ-KEVLSHPAVGGFW--S----HCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE-GDL 395 (451)
T ss_pred CCeEEEccCCH-HHHhCCCccCeee--e----cCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC-Ccc
Confidence 46666777644 347777555 65 2 233468999999999999875432 23333332 4666653 233
Q ss_pred ChHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012132 412 GITPLAKNIVKLATHVERRLTMGKRGY 438 (470)
Q Consensus 412 ~~~~la~~i~~ll~~~~~~~~~~~~a~ 438 (470)
+.+++++++.+++.+++ .+++.++++
T Consensus 396 ~~~~v~~av~~lm~~~~-~~~~r~~a~ 421 (451)
T PLN02410 396 DRGAVERAVKRLMVEEE-GEEMRKRAI 421 (451)
T ss_pred cHHHHHHHHHHHHcCCc-HHHHHHHHH
Confidence 48999999999998754 333444443
No 154
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.56 E-value=0.5 Score=41.86 Aligned_cols=120 Identities=13% Similarity=0.067 Sum_probs=68.1
Q ss_pred HHHHHHHcCCCCCCeEEEEEeecccCCCH--HHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHh
Q 012132 257 REHVRESLGVRNEDLLFAIINSVSRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ 334 (470)
Q Consensus 257 ~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~--~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~ 334 (470)
++.+++.+.. ...++-++||.-++.-.. |.+.+....+.+.+.+ ....+++--+-. -.+..+..++.
T Consensus 150 ~e~~~~~~p~-~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~-----~g~~~lisfSRR-----Tp~~~~s~l~~ 218 (329)
T COG3660 150 REAFKHLLPL-PRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILEN-----QGGSFLISFSRR-----TPDTVKSILKN 218 (329)
T ss_pred HHHHHhhCCC-CCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHh-----CCceEEEEeecC-----CcHHHHHHHHh
Confidence 4455554422 456777788865543333 4444444444444443 345666655542 23445555554
Q ss_pred -cCCCCcEEEeccc---CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC
Q 012132 335 -KKIQDRVHFVNKT---LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG 392 (470)
Q Consensus 335 -~~l~~~V~~~g~~---~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g 392 (470)
+.-..-+.+-+.. +-..+++++||.++.+.- .=.-.-||.+.|+||-+....+
T Consensus 219 ~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaD-----SinM~sEAasTgkPv~~~~~~~ 275 (329)
T COG3660 219 NLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTAD-----SINMCSEAASTGKPVFILEPPN 275 (329)
T ss_pred ccccCceeEeCCCCCCCCchHHHHhhcceEEEecc-----hhhhhHHHhccCCCeEEEecCC
Confidence 3323334444432 346788999999997754 1234569999999998765443
No 155
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=96.55 E-value=0.3 Score=43.54 Aligned_cols=310 Identities=12% Similarity=0.077 Sum_probs=139.7
Q ss_pred CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhh-HHhhcCCcEEEEcccchhhhH
Q 012132 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQET-INTALKADLIVLNTAVAGKWL 165 (470)
Q Consensus 87 ~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~DiV~~~~~~~~~~~ 165 (470)
+|+.+...++-....+.||+++++........+.. ........++.+....... +.+...+|++.+++..+...-
T Consensus 1 CGVTr~a~e~~~wf~KNg~~~~i~~a~e~sftR~d----sH~~~~~si~k~~~~e~de~v~~vN~yDI~m~nSvPa~~vq 76 (355)
T PF11440_consen 1 CGVTRNALEMRDWFDKNGVEFTIVSADEKSFTRPD----SHDSKSFSIPKYLAKEYDETVKKVNDYDIVMFNSVPATKVQ 76 (355)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEETSS--TTTT----SSS-TTTEEEE-TTTHHHHHHHHHTSSSEEEEEE--BTTS-
T ss_pred CCccccHHHHHHHHHhcCCeeEEEEecccccCCcc----ccccceeeeehhhHHHHHHHHHHhhccCEEEEecccCchHH
Confidence 37778889999999999999999985443221110 1112223344444444433 334568999999985543332
Q ss_pred HHHh---hhcCCccc--cceeeEEeeeccccchhh--hhcccccccceeeeehhhHHHHHHhhh-hhhc------cCCCc
Q 012132 166 DAVL---KEDVPRVL--PNVLWWIHEMRGHYFKLD--YVKHLPLVAGAMIDSHVTAEYWKNRTR-ERLR------IKMPD 231 (470)
Q Consensus 166 ~~~~---~~~~~~~~--~~~~~~~h~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~------~~~~~ 231 (470)
.... .+.+..+. .+++...|+.......+. ....++..+.+.+.+... .+.+.+. +.++ -..++
T Consensus 77 E~~iNnY~kii~~Ik~~ik~V~~~Hdh~~lsI~rn~~le~~m~~~DvIfshs~~g--~f~kv~m~~l~Ps~~~l~~~i~~ 154 (355)
T PF11440_consen 77 EAIINNYEKIIKKIKPSIKVVGFMHDHNKLSIDRNPYLEGTMNEMDVIFSHSDNG--WFSKVLMKELLPSKVSLFDRIKK 154 (355)
T ss_dssp HHHHHHHHHHHHCS-TTSEEEEEE---SHHHHTTBSSHHHHHHH-SEEEES-TTS--HHHHTHHHHHS-SS--SSS----
T ss_pred HHHHHHHHHHHHhccccceeEEEeeccceeeccccccHHHHHHhhcEEEeccccc--hHHHHHHHhhccccCchhhhhhh
Confidence 2111 11111111 244567787643333222 233345556665554432 1122111 1111 11222
Q ss_pred eEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEE---EEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCc
Q 012132 232 TYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLF---AIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 308 (470)
Q Consensus 232 i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i---~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~ 308 (470)
+..+.|.-++.. -...|..+-.+...+.. +++||..-.||...+++.-++..+ -++
T Consensus 155 ~p~v~nfqpp~~-------------i~~~Rstywkd~se~nmnv~~yigR~Tt~kG~~~mfD~h~~~lK--------~~~ 213 (355)
T PF11440_consen 155 FPMVFNFQPPMD-------------INKYRSTYWKDVSEKNMNVNRYIGRQTTWKGPRRMFDLHEKILK--------PAG 213 (355)
T ss_dssp ---EEE----B--------------HHHHHHHH---GGGSEEEEEEEE--SSGGG-HHHHHHHHHHTTT--------TTT
T ss_pred cceeeecCCccc-------------HHHHHHHHhhhhHhhhcccceeeeeeeeecCcHHHhhhHHHhcC--------Ccc
Confidence 333444322111 12234434333334444 799999999999999998876533 378
Q ss_pred eEEEEEeCCCCcChHHHHHHHH----------HHHhcCC--CCcEEEecc-c-CCHHHHHHhcCEEEEccCC----cccc
Q 012132 309 VHAVIIGSDMNAQTKFESELRN----------YVMQKKI--QDRVHFVNK-T-LTVAPYLAAIDVLVQNSQA----WGEC 370 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~----------~~~~~~l--~~~V~~~g~-~-~~~~~~~~~aDv~v~pS~~----~~E~ 370 (470)
++-++-|-... +..-.-+.. .+.+..+ ...+..+|. + ++..+.++.+-..+.-+.. -.+.
T Consensus 214 ~~t~~~GierS--~A~~~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E~~~~Maks~Fgy~~~k~~~~y~~r~ 291 (355)
T PF11440_consen 214 FKTIMEGIERS--PAKISIKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRSEGLERMAKSLFGYQLSKLQQKYLQRS 291 (355)
T ss_dssp -EEEEE---SS--THHHHHHHTT--EEEE-CTGGGG---SSS--EEEESS--HHHHHHHHHTEEEEEE-----GGG-SS-
T ss_pred hhHHhhhhhcC--CceeeeecCCcccccCccccccCcccCCCCcceecchhhhHHHHHHHhhccceeecHHHHHHHHHhh
Confidence 88888875321 122222111 0001111 123666774 3 7888888888776654431 1234
Q ss_pred cchHHHHHHhcCC-CEEecCCCCcc-------eeeecCceeeeecCCCCChHHHHHHHHHHHhCH
Q 012132 371 FGRITIEAMAFQL-PVLGTAAGGTT-------EIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 427 (470)
Q Consensus 371 ~g~~~lEAma~G~-PvI~s~~~g~~-------e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 427 (470)
+-.+-+|..|||+ ||.-...|..- -.+......+.++..| .++-.+.|.++.+++
T Consensus 292 mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~~~~~~~~~~I~~De~d--le~T~ekl~E~a~~~ 354 (355)
T PF11440_consen 292 MEYTQIELIAVGTIPVFDKSWGENNRFTLDGTRYIDHPYSAIYFDEND--LESTVEKLIEVANNR 354 (355)
T ss_dssp --HHHHHHHHCTSEEEEEHHHHHHSB-TTTSSBGGSS--S-EEE-TTS--HHHHHHHHHHHHT-H
T ss_pred hhhheeeeeeeceeeeeeccccccceeeecCceeeccCcceeEeccch--HHHHHHHHHHHhccC
Confidence 5678899999996 55544333221 1222333456677766 888888888776653
No 156
>PLN03007 UDP-glucosyltransferase family protein
Probab=96.52 E-value=0.095 Score=52.52 Aligned_cols=85 Identities=13% Similarity=0.035 Sum_probs=53.7
Q ss_pred CCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeec-Cceeeee------
Q 012132 338 QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVN-GTTGLLH------ 406 (470)
Q Consensus 338 ~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~-~~~G~l~------ 406 (470)
+.++.+.++..+ ..+++.+++-.+=+. +--++++||+++|+|+|+-...+ ....+.+ -..|+-+
T Consensus 344 ~~g~~v~~w~PQ-~~iL~h~~v~~fvtH----~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~ 418 (482)
T PLN03007 344 GKGLIIRGWAPQ-VLILDHQATGGFVTH----CGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLV 418 (482)
T ss_pred cCCEEEecCCCH-HHHhccCccceeeec----CcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEecccccc
Confidence 357888888755 468888876333332 33468999999999999976432 1211111 1223322
Q ss_pred --cCCCCChHHHHHHHHHHHhCH
Q 012132 407 --PVGKEGITPLAKNIVKLATHV 427 (470)
Q Consensus 407 --~~~d~~~~~la~~i~~ll~~~ 427 (470)
+....+.+++++++.+++.++
T Consensus 419 ~~~~~~~~~~~l~~av~~~m~~~ 441 (482)
T PLN03007 419 KVKGDFISREKVEKAVREVIVGE 441 (482)
T ss_pred ccccCcccHHHHHHHHHHHhcCc
Confidence 122223889999999999875
No 157
>PLN02562 UDP-glycosyltransferase
Probab=96.50 E-value=0.052 Score=53.74 Aligned_cols=87 Identities=15% Similarity=0.052 Sum_probs=57.0
Q ss_pred CcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeec-CceeeeecCCCCCh
Q 012132 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVN-GTTGLLHPVGKEGI 413 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~-~~~G~l~~~~d~~~ 413 (470)
+++.+.++..+ ..+++..++..+=+. +--++++||+.+|+|+|+-...+ ....+.+ -+.|+-+...+ .
T Consensus 328 ~~~~v~~w~PQ-~~iL~h~~v~~fvtH----~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~--~ 400 (448)
T PLN02562 328 KQGKVVSWAPQ-LEVLKHQAVGCYLTH----CGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGFG--Q 400 (448)
T ss_pred cCEEEEecCCH-HHHhCCCccceEEec----CcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCCC--H
Confidence 57777787633 467777665443343 33478999999999999875433 3333333 24455553333 8
Q ss_pred HHHHHHHHHHHhCHHHHHH
Q 012132 414 TPLAKNIVKLATHVERRLT 432 (470)
Q Consensus 414 ~~la~~i~~ll~~~~~~~~ 432 (470)
+++++++.+++.+++.+++
T Consensus 401 ~~l~~~v~~~l~~~~~r~~ 419 (448)
T PLN02562 401 KEVEEGLRKVMEDSGMGER 419 (448)
T ss_pred HHHHHHHHHHhCCHHHHHH
Confidence 9999999999988665444
No 158
>PLN02208 glycosyltransferase family protein
Probab=96.45 E-value=0.12 Score=50.97 Aligned_cols=96 Identities=8% Similarity=-0.066 Sum_probs=60.9
Q ss_pred CcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeec-CceeeeecCCC---
Q 012132 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVN-GTTGLLHPVGK--- 410 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~-~~~G~l~~~~d--- 410 (470)
.++.+.+|..+. ++++...+..+=|+ +--++++||+++|+|+|+-..-+ ....+.+ -+.|..+...+
T Consensus 311 ~g~~v~~W~PQ~-~iL~H~~v~~FvtH----cG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~ 385 (442)
T PLN02208 311 RGVVWGGWVQQP-LILDHPSIGCFVNH----CGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGW 385 (442)
T ss_pred CCcEeeccCCHH-HHhcCCccCeEEcc----CCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCc
Confidence 456677776443 57777776444443 23378999999999999975432 2232222 34566664322
Q ss_pred CChHHHHHHHHHHHhCH-HHHHHHHHHHHH
Q 012132 411 EGITPLAKNIVKLATHV-ERRLTMGKRGYE 439 (470)
Q Consensus 411 ~~~~~la~~i~~ll~~~-~~~~~~~~~a~~ 439 (470)
.+.++++++|.++++++ +..+++.+++++
T Consensus 386 ~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~ 415 (442)
T PLN02208 386 FSKESLSNAIKSVMDKDSDLGKLVRSNHTK 415 (442)
T ss_pred CcHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 24899999999999765 344555555544
No 159
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=96.26 E-value=0.49 Score=44.21 Aligned_cols=72 Identities=11% Similarity=-0.034 Sum_probs=43.7
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEe
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG 387 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~ 387 (470)
+.+++++....+ ...+..+++.+.+.-...+......+++..+++.+|++|-...+ .++=|+.+|+|+|+
T Consensus 205 g~~v~~i~~~~~---~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~RlH-------~~I~A~~~gvP~i~ 274 (298)
T TIGR03609 205 GAFVLFLPFQQP---QDLPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMRLH-------ALILAAAAGVPFVA 274 (298)
T ss_pred CCeEEEEeCCcc---hhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEechH-------HHHHHHHcCCCEEE
Confidence 455555543221 13344445555443333443222236788899999988866663 57779999999997
Q ss_pred cC
Q 012132 388 TA 389 (470)
Q Consensus 388 s~ 389 (470)
-.
T Consensus 275 i~ 276 (298)
T TIGR03609 275 LS 276 (298)
T ss_pred ee
Confidence 63
No 160
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=96.22 E-value=0.2 Score=50.00 Aligned_cols=83 Identities=11% Similarity=0.131 Sum_probs=52.3
Q ss_pred CcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeee-cCceeeeecCC--
Q 012132 339 DRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVV-NGTTGLLHPVG-- 409 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~-~~~~G~l~~~~-- 409 (470)
.++.+.++..+ .++++. .++|| .-+--++++||+++|+|+|+-...+ ....+. .-+.|.....+
T Consensus 343 ~g~~v~~w~PQ-~~vL~h~~v~~fv------tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~ 415 (477)
T PLN02863 343 RGLVIRGWAPQ-VAILSHRAVGAFL------THCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGAD 415 (477)
T ss_pred CCEEecCCCCH-HHHhcCCCcCeEE------ecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCC
Confidence 46777788754 457765 55666 3334568999999999999875432 222222 22456555221
Q ss_pred -CCChHHHHHHHHHHHh-CHH
Q 012132 410 -KEGITPLAKNIVKLAT-HVE 428 (470)
Q Consensus 410 -d~~~~~la~~i~~ll~-~~~ 428 (470)
..+.+++++++.+++. +++
T Consensus 416 ~~~~~~~v~~~v~~~m~~~~~ 436 (477)
T PLN02863 416 TVPDSDELARVFMESVSENQV 436 (477)
T ss_pred CCcCHHHHHHHHHHHhhccHH
Confidence 1127899999999884 443
No 161
>PLN02764 glycosyltransferase family protein
Probab=96.21 E-value=0.21 Score=49.32 Aligned_cols=93 Identities=13% Similarity=-0.003 Sum_probs=57.0
Q ss_pred cEEEecccCCHHHHHHhcCE--EEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeee-cCceeeeecCC---
Q 012132 340 RVHFVNKTLTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVV-NGTTGLLHPVG--- 409 (470)
Q Consensus 340 ~V~~~g~~~~~~~~~~~aDv--~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~-~~~~G~l~~~~--- 409 (470)
.+.+.+|..+ .++++...+ || .-+--++++||+.+|+|+|+-...+ ....+. .-+.|+-....
T Consensus 318 G~v~~~W~PQ-~~vL~h~~v~~Fv------tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~ 390 (453)
T PLN02764 318 GVVWGGWVQQ-PLILSHPSVGCFV------SHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETG 390 (453)
T ss_pred CcEEeCCCCH-HHHhcCcccCeEE------ecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCC
Confidence 3555676543 356666544 66 3344578999999999999986443 233332 23445544221
Q ss_pred CCChHHHHHHHHHHHhCH-HHHHHHHHHHHH
Q 012132 410 KEGITPLAKNIVKLATHV-ERRLTMGKRGYE 439 (470)
Q Consensus 410 d~~~~~la~~i~~ll~~~-~~~~~~~~~a~~ 439 (470)
+.+.+++.+++.+++++. +..+++.+++++
T Consensus 391 ~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~ 421 (453)
T PLN02764 391 WFSKESLRDAINSVMKRDSEIGNLVKKNHTK 421 (453)
T ss_pred ccCHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 224899999999999864 444455555543
No 162
>PLN02210 UDP-glucosyl transferase
Probab=96.07 E-value=0.16 Score=50.37 Aligned_cols=84 Identities=12% Similarity=0.105 Sum_probs=53.6
Q ss_pred cEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeec-CceeeeecCC----C
Q 012132 340 RVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVN-GTTGLLHPVG----K 410 (470)
Q Consensus 340 ~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~-~~~G~l~~~~----d 410 (470)
+..+.++..+. ++++.+++..+-+. +--++++||+.+|+|+|+-...+ ....+.+ -+.|..+... .
T Consensus 325 ~g~v~~w~PQ~-~iL~h~~vg~FitH----~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~ 399 (456)
T PLN02210 325 QGVVLEWSPQE-KILSHMAISCFVTH----CGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGE 399 (456)
T ss_pred CeEEEecCCHH-HHhcCcCcCeEEee----CCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCc
Confidence 44556776543 57888874333332 22358999999999999976433 2333333 3567665421 2
Q ss_pred CChHHHHHHHHHHHhCHH
Q 012132 411 EGITPLAKNIVKLATHVE 428 (470)
Q Consensus 411 ~~~~~la~~i~~ll~~~~ 428 (470)
.+.+++++++.+++.+++
T Consensus 400 ~~~~~l~~av~~~m~~~~ 417 (456)
T PLN02210 400 LKVEEVERCIEAVTEGPA 417 (456)
T ss_pred CCHHHHHHHHHHHhcCch
Confidence 238899999999997643
No 163
>PLN03004 UDP-glycosyltransferase
Probab=95.96 E-value=0.16 Score=50.24 Aligned_cols=87 Identities=14% Similarity=0.077 Sum_probs=58.8
Q ss_pred CcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeec-CceeeeecCC---C
Q 012132 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVN-GTTGLLHPVG---K 410 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~-~~~G~l~~~~---d 410 (470)
.++.+.+|..+. ++++.+++..+=+. +--++++||+++|+|+|+-...+ ....+.+ -+.|...+.+ .
T Consensus 334 ~g~~v~~W~PQ~-~iL~H~~v~~FvTH----~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~ 408 (451)
T PLN03004 334 KGMVVKSWAPQV-PVLNHKAVGGFVTH----CGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGF 408 (451)
T ss_pred CcEEEEeeCCHH-HHhCCCccceEecc----CcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCc
Confidence 468888886543 58888998444343 33478999999999999975432 3333432 3567666532 1
Q ss_pred CChHHHHHHHHHHHhCHHHH
Q 012132 411 EGITPLAKNIVKLATHVERR 430 (470)
Q Consensus 411 ~~~~~la~~i~~ll~~~~~~ 430 (470)
.+.+++++++.+++.+++.+
T Consensus 409 ~~~e~l~~av~~vm~~~~~r 428 (451)
T PLN03004 409 VSSTEVEKRVQEIIGECPVR 428 (451)
T ss_pred cCHHHHHHHHHHHhcCHHHH
Confidence 24899999999999875433
No 164
>PLN00414 glycosyltransferase family protein
Probab=95.88 E-value=0.43 Score=47.17 Aligned_cols=94 Identities=7% Similarity=-0.051 Sum_probs=59.9
Q ss_pred EEEecccCCHHHHHHhc--CEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeee-cCceeeeecCC---C
Q 012132 341 VHFVNKTLTVAPYLAAI--DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVV-NGTTGLLHPVG---K 410 (470)
Q Consensus 341 V~~~g~~~~~~~~~~~a--Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~-~~~~G~l~~~~---d 410 (470)
..+.++..+ .++++.. +.|| .-+--++++||+.+|+|+|+-...+ ....+. .-+.|..+..+ .
T Consensus 314 ~vv~~w~PQ-~~vL~h~~v~~fv------tH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~ 386 (446)
T PLN00414 314 IVWEGWVEQ-PLILSHPSVGCFV------NHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGW 386 (446)
T ss_pred eEEeccCCH-HHHhcCCccceEE------ecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCc
Confidence 455677544 3567666 4566 3334578999999999999975432 233332 33566666321 1
Q ss_pred CChHHHHHHHHHHHhCH-HHHHHHHHHHHHHH
Q 012132 411 EGITPLAKNIVKLATHV-ERRLTMGKRGYERV 441 (470)
Q Consensus 411 ~~~~~la~~i~~ll~~~-~~~~~~~~~a~~~~ 441 (470)
.+.+++++++.+++.++ +..+++.+++++.-
T Consensus 387 ~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~ 418 (446)
T PLN00414 387 FSKESLRDTVKSVMDKDSEIGNLVKRNHKKLK 418 (446)
T ss_pred cCHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 34899999999999764 44556666665543
No 165
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=95.86 E-value=1.2 Score=44.32 Aligned_cols=148 Identities=13% Similarity=0.087 Sum_probs=91.8
Q ss_pred EEEeec-ccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc--cCCH
Q 012132 274 AIINSV-SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--TLTV 350 (470)
Q Consensus 274 ~~vGrl-~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~--~~~~ 350 (470)
+..|.- .-+||-+..++++.+. -+++-.|.+... ... .++.-|.=+|. ..++
T Consensus 281 lVyGK~~~~w~~k~~~l~~l~~~-----------~eih~tV~~~~~-----~~~---------~~P~~V~NHG~l~~~ef 335 (559)
T PF15024_consen 281 LVYGKERYMWKGKEKYLDVLHKY-----------MEIHGTVYDEPQ-----RPP---------NVPSFVKNHGILSGDEF 335 (559)
T ss_pred EEEccchhhhcCcHHHHHHHHhh-----------cEEEEEeccCCC-----CCc---------ccchhhhhcCcCCHHHH
Confidence 344543 3367778888877643 467777755531 011 22233444453 3789
Q ss_pred HHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC---------------cceeee---------cCceeeee
Q 012132 351 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG---------------TTEIVV---------NGTTGLLH 406 (470)
Q Consensus 351 ~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g---------------~~e~v~---------~~~~G~l~ 406 (470)
..+++.+.+||--... .| |=+.+||+|.|+|.|-..... .+++-. ..-.-+.+
T Consensus 336 ~~lL~~akvfiGlGfP-~E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytV 412 (559)
T PF15024_consen 336 QQLLRKAKVFIGLGFP-YE--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTV 412 (559)
T ss_pred HHHHHhhhEeeecCCC-CC--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEE
Confidence 9999999999954431 33 457999999999999764321 122211 11123556
Q ss_pred cCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Q 012132 407 PVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 460 (470)
Q Consensus 407 ~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 460 (470)
+.+| .+++.+||.+++..+- .-++--.|+-+.|.+++..+++.
T Consensus 413 d~~n--~~~v~~Avk~il~~~v---------~Py~P~efT~egmLeRv~~~ie~ 455 (559)
T PF15024_consen 413 DINN--STEVEAAVKAILATPV---------EPYLPYEFTCEGMLERVNALIEK 455 (559)
T ss_pred cCCC--HHHHHHHHHHHHhcCC---------CCcCCcccCHHHHHHHHHHHHHh
Confidence 6666 9999999999988642 12233448888888888766654
No 166
>PLN02173 UDP-glucosyl transferase family protein
Probab=95.83 E-value=0.24 Score=48.91 Aligned_cols=94 Identities=11% Similarity=0.100 Sum_probs=59.1
Q ss_pred CcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecC-ceeeeecCCC---
Q 012132 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNG-TTGLLHPVGK--- 410 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~-~~G~l~~~~d--- 410 (470)
+++.+.++..+ .++++..++..+-++ +-.++++||+++|+|+|+-..-+ ....+.+. +.|+-+...+
T Consensus 317 ~~~~i~~W~PQ-~~iL~H~~v~~FvtH----cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~ 391 (449)
T PLN02173 317 DKSLVLKWSPQ-LQVLSNKAIGCFMTH----CGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESG 391 (449)
T ss_pred CceEEeCCCCH-HHHhCCCccceEEec----CccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCC
Confidence 57888888654 357888774444443 34579999999999999975432 23333332 3555543211
Q ss_pred -CChHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012132 411 -EGITPLAKNIVKLATHVERRLTMGKRGY 438 (470)
Q Consensus 411 -~~~~~la~~i~~ll~~~~~~~~~~~~a~ 438 (470)
.+.+++++++.+++.+++ .+++.++++
T Consensus 392 ~~~~e~v~~av~~vm~~~~-~~~~r~~a~ 419 (449)
T PLN02173 392 IAKREEIEFSIKEVMEGEK-SKEMKENAG 419 (449)
T ss_pred cccHHHHHHHHHHHhcCCh-HHHHHHHHH
Confidence 137999999999997643 233444443
No 167
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=95.63 E-value=0.32 Score=48.42 Aligned_cols=84 Identities=11% Similarity=-0.043 Sum_probs=54.8
Q ss_pred CcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceee-ecCceeeeecCC--CC
Q 012132 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIV-VNGTTGLLHPVG--KE 411 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v-~~~~~G~l~~~~--d~ 411 (470)
.++.+.++..+ .++++...+..+-+ -+--++++||+.+|+|+|+-...+ ....+ +.-+.|...+.. ..
T Consensus 338 rg~vv~~W~PQ-~~iL~h~~vg~Fit----H~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~ 412 (481)
T PLN02992 338 RGFVVPSWAPQ-AEILAHQAVGGFLT----HCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVI 412 (481)
T ss_pred CCEEEeecCCH-HHHhCCcccCeeEe----cCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcc
Confidence 35777888654 35777777633333 334578999999999999986433 22233 233456666431 23
Q ss_pred ChHHHHHHHHHHHhCH
Q 012132 412 GITPLAKNIVKLATHV 427 (470)
Q Consensus 412 ~~~~la~~i~~ll~~~ 427 (470)
+.++++++|.+++.++
T Consensus 413 ~~~~l~~av~~vm~~~ 428 (481)
T PLN02992 413 SRSKIEALVRKVMVEE 428 (481)
T ss_pred cHHHHHHHHHHHhcCC
Confidence 4899999999999763
No 168
>PLN02167 UDP-glycosyltransferase family protein
Probab=95.56 E-value=0.26 Score=49.28 Aligned_cols=81 Identities=14% Similarity=0.056 Sum_probs=50.4
Q ss_pred cEEEecccCCHHHHHHhc--CEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cc-eeeecCceeeeecCC---
Q 012132 340 RVHFVNKTLTVAPYLAAI--DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TT-EIVVNGTTGLLHPVG--- 409 (470)
Q Consensus 340 ~V~~~g~~~~~~~~~~~a--Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~-e~v~~~~~G~l~~~~--- 409 (470)
+..+.++..+ ..+++.. +.|| .-+--++++||+++|+|+|+-...+ .. .++..-+.|+.+...
T Consensus 341 rg~v~~w~PQ-~~iL~h~~vg~fv------tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~ 413 (475)
T PLN02167 341 RGLVCGWAPQ-VEILAHKAIGGFV------SHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVS 413 (475)
T ss_pred CeeeeccCCH-HHHhcCcccCeEE------eeCCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeeccccc
Confidence 4556677533 3567664 4566 2233468999999999999875332 22 123333456655321
Q ss_pred ----CCChHHHHHHHHHHHhCH
Q 012132 410 ----KEGITPLAKNIVKLATHV 427 (470)
Q Consensus 410 ----d~~~~~la~~i~~ll~~~ 427 (470)
..+.+++++++.+++.++
T Consensus 414 ~~~~~~~~~~l~~av~~~m~~~ 435 (475)
T PLN02167 414 AYGEIVKADEIAGAVRSLMDGE 435 (475)
T ss_pred ccCCcccHHHHHHHHHHHhcCC
Confidence 123789999999999754
No 169
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.56 E-value=0.47 Score=44.34 Aligned_cols=249 Identities=15% Similarity=0.050 Sum_probs=124.0
Q ss_pred chhHHHHHHHHHHHhC-CceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCcEEEEcccchhhhHH
Q 012132 88 GGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLD 166 (470)
Q Consensus 88 G~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~ 166 (470)
|.+....-|+++|... ++++..+........ +..... ...... ............||+|++..........
T Consensus 2 Gh~~Q~~GLa~aL~~~~~~~~~~v~~~~~~~~------lp~~~~-~~~~~~-~~~~~~~~~~~~pdLiIsaGr~t~~~~~ 73 (311)
T PF06258_consen 2 GHENQSLGLAEALGRLTPYEIKRVDVRRPWRW------LPRLLP-APLRAL-LKPFSPALEPPWPDLIISAGRRTAPAAL 73 (311)
T ss_pred chHHHHHHHHHHhcCccCcceeEeccccchhh------cccccc-chHHHh-hhcccccccCCCCcEEEECCCchHHHHH
Confidence 5577888899999773 788877764431100 000000 000000 0001111223579999998755544333
Q ss_pred HHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhhcc-CCCceE---EEecCCchh
Q 012132 167 AVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRI-KMPDTY---VVHLGNSKE 242 (470)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~i~---vi~ngvd~~ 242 (470)
.+.+... .-...+|-+.+... ...+|-+++.... +. ..+++. ..+|.++.+
T Consensus 74 ~l~r~~g-----g~~~~V~i~~P~~~-------~~~FDlvi~p~HD-------------~~~~~~Nvl~t~ga~~~i~~~ 128 (311)
T PF06258_consen 74 ALRRASG-----GRTKTVQIMDPRLP-------PRPFDLVIVPEHD-------------RLPRGPNVLPTLGAPNRITPE 128 (311)
T ss_pred HHHHHcC-----CCceEEEEcCCCCC-------ccccCEEEECccc-------------CcCCCCceEecccCCCcCCHH
Confidence 3332211 11123333322221 1233444443332 11 123322 234555555
Q ss_pred hhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCC--CHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCc
Q 012132 243 LMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGK--GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA 320 (470)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~K--g~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~ 320 (470)
..... +.++..+++-.+.+.+.+.+|.-+..- +.+..-+.+.++.+..++ ....+.|..+.-.
T Consensus 129 ~l~~a---------~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~~vttSRRT- 193 (311)
T PF06258_consen 129 RLAEA---------AAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAA-----YGGSLLVTTSRRT- 193 (311)
T ss_pred HHHHH---------HHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHh-----CCCeEEEEcCCCC-
Confidence 43322 344555565445666666788643322 333222233333332322 3478888887532
Q ss_pred ChHHHHHHHHHHHhcCCCCcEEEecc-c-CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC
Q 012132 321 QTKFESELRNYVMQKKIQDRVHFVNK-T-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG 392 (470)
Q Consensus 321 ~~~~~~~l~~~~~~~~l~~~V~~~g~-~-~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g 392 (470)
.++..+.|++..+ -.+.+.+... - +-+..+|+.||.++.+.- .-.-+.||.+.|+||.+...++
T Consensus 194 p~~~~~~L~~~~~---~~~~~~~~~~~~~nPy~~~La~ad~i~VT~D-----SvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 194 PPEAEAALRELLK---DNPGVYIWDGTGENPYLGFLAAADAIVVTED-----SVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred cHHHHHHHHHhhc---CCCceEEecCCCCCcHHHHHHhCCEEEEcCc-----cHHHHHHHHHcCCCEEEecCCC
Confidence 1134555555544 2346644433 2 457889999999998764 1234679999999999987765
No 170
>PLN02554 UDP-glycosyltransferase family protein
Probab=95.52 E-value=0.65 Score=46.59 Aligned_cols=86 Identities=16% Similarity=0.112 Sum_probs=53.0
Q ss_pred CcEEEecccCCHHHHH--HhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cc-eeeecCceeeeecC---
Q 012132 339 DRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TT-EIVVNGTTGLLHPV--- 408 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~--~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~-e~v~~~~~G~l~~~--- 408 (470)
+++.+.++..+ .+++ .++++|| .-+--++++||+.+|+|+|+-...+ .. .+++.-+.|..+..
T Consensus 342 ~~g~v~~W~PQ-~~iL~H~~v~~Fv------tH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~ 414 (481)
T PLN02554 342 DIGKVIGWAPQ-VAVLAKPAIGGFV------THCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWR 414 (481)
T ss_pred cCceEEeeCCH-HHHhCCcccCccc------ccCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeecccc
Confidence 46666777543 3566 4445566 3333468999999999999975432 22 22333345555431
Q ss_pred --------CCCChHHHHHHHHHHHh-CHHHHH
Q 012132 409 --------GKEGITPLAKNIVKLAT-HVERRL 431 (470)
Q Consensus 409 --------~d~~~~~la~~i~~ll~-~~~~~~ 431 (470)
...+.++++++|.+++. +++.++
T Consensus 415 ~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~ 446 (481)
T PLN02554 415 GDLLAGEMETVTAEEIERGIRCLMEQDSDVRK 446 (481)
T ss_pred ccccccccCeEcHHHHHHHHHHHhcCCHHHHH
Confidence 12237899999999996 544433
No 171
>PLN02555 limonoid glucosyltransferase
Probab=95.48 E-value=0.62 Score=46.50 Aligned_cols=94 Identities=16% Similarity=0.152 Sum_probs=57.5
Q ss_pred CCcEEEecccCCHHHHH--HhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecC-ceeeeec---
Q 012132 338 QDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNG-TTGLLHP--- 407 (470)
Q Consensus 338 ~~~V~~~g~~~~~~~~~--~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~-~~G~l~~--- 407 (470)
.+++.+.++..+ ..++ .+..+|| .-+--++++||+.+|+|+|+-..-+ ....+.+. +.|+-+.
T Consensus 336 ~~~g~v~~W~PQ-~~iL~H~~v~~Fv------tH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~ 408 (480)
T PLN02555 336 GDKGKIVQWCPQ-EKVLAHPSVACFV------THCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGE 408 (480)
T ss_pred CCceEEEecCCH-HHHhCCCccCeEE------ecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCc
Confidence 357777787654 3466 4456666 3334578999999999999975432 22223332 4555552
Q ss_pred --CCCCChHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 012132 408 --VGKEGITPLAKNIVKLATHVERRLTMGKRGYE 439 (470)
Q Consensus 408 --~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~ 439 (470)
.+..+.+++++++.+++.+++ -+++.+++++
T Consensus 409 ~~~~~v~~~~v~~~v~~vm~~~~-g~~~r~ra~~ 441 (480)
T PLN02555 409 AENKLITREEVAECLLEATVGEK-AAELKQNALK 441 (480)
T ss_pred cccCcCcHHHHHHHHHHHhcCch-HHHHHHHHHH
Confidence 112237899999999997643 2344444443
No 172
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=95.23 E-value=0.35 Score=47.87 Aligned_cols=85 Identities=11% Similarity=0.056 Sum_probs=53.2
Q ss_pred CCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecC-ceeeeecC--CC
Q 012132 338 QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNG-TTGLLHPV--GK 410 (470)
Q Consensus 338 ~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~-~~G~l~~~--~d 410 (470)
.++..+.++..+ .++++..++-.+-+. +-.++++||+.+|+|+|+-...+ ....+.+. +.|+-... .+
T Consensus 326 ~~~g~v~~W~PQ-~~iL~h~~vg~fvtH----~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~ 400 (455)
T PLN02152 326 EEVGMIVSWCSQ-IEVLRHRAVGCFVTH----CGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEG 400 (455)
T ss_pred cCCeEEEeeCCH-HHHhCCcccceEEee----CCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCC
Confidence 356677787654 357888776444443 33478999999999999875432 22223221 23444321 11
Q ss_pred -CChHHHHHHHHHHHhCH
Q 012132 411 -EGITPLAKNIVKLATHV 427 (470)
Q Consensus 411 -~~~~~la~~i~~ll~~~ 427 (470)
.+.+++++++.+++.++
T Consensus 401 ~~~~e~l~~av~~vm~~~ 418 (455)
T PLN02152 401 LVERGEIRRCLEAVMEEK 418 (455)
T ss_pred cCcHHHHHHHHHHHHhhh
Confidence 13789999999999754
No 173
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=95.01 E-value=0.3 Score=44.82 Aligned_cols=104 Identities=15% Similarity=0.153 Sum_probs=62.5
Q ss_pred CCCeEEEEEeecccC-------CCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCc
Q 012132 268 NEDLLFAIINSVSRG-------KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDR 340 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~-------Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~ 340 (470)
.++..++++...... .....+++.+..+.+ ..|+.+++|==.......... ....+..-..+
T Consensus 115 ~~~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~-------~~p~~~lvvK~HP~~~~~~~~----~~~~~~~~~~~ 183 (269)
T PF05159_consen 115 KNKKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAK-------ENPDAKLVVKPHPDERGGNKY----SYLEELPNLPN 183 (269)
T ss_pred CCCCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHH-------HCCCCEEEEEECchhhCCCCh----hHhhhhhcCCC
Confidence 445556666665443 234556666665544 347888877544210000011 22222211245
Q ss_pred EEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecC
Q 012132 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389 (470)
Q Consensus 341 V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~ 389 (470)
+.+......+.+++..||.++.-+ +.+-+||+.+|+||++..
T Consensus 184 ~~~~~~~~~~~~Ll~~s~~Vvtin-------StvGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSDAVVTIN-------STVGLEALLHGKPVIVFG 225 (269)
T ss_pred eEEECCCCCHHHHHHhCCEEEEEC-------CHHHHHHHHcCCceEEec
Confidence 666666678999999999887543 358999999999999974
No 174
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=94.79 E-value=0.44 Score=45.34 Aligned_cols=109 Identities=12% Similarity=0.120 Sum_probs=66.2
Q ss_pred HHHHHHcCCCC-CCeEEEEEee-cccCCCHH--HHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHH
Q 012132 258 EHVRESLGVRN-EDLLFAIINS-VSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM 333 (470)
Q Consensus 258 ~~~r~~~~~~~-~~~~i~~vGr-l~~~Kg~~--~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~ 333 (470)
+.+..+++++. .+++++..|. ..+.|... ...+.+..+.+ .+.++++.|+.. ..+..+++.+
T Consensus 162 ~~~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~---------~~~~ivl~G~~~-----e~~~~~~i~~ 227 (334)
T TIGR02195 162 AAALAKFGLDTERPIIAFCPGAEFGPAKRWPHEHYAELAKRLID---------QGYQVVLFGSAK-----DHPAGNEIEA 227 (334)
T ss_pred HHHHHHcCCCCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHH---------CCCEEEEEEChh-----hHHHHHHHHH
Confidence 34556667654 4566666665 34667554 55555554432 357888998752 2333344433
Q ss_pred hcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEec
Q 012132 334 QKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 388 (470)
Q Consensus 334 ~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s 388 (470)
..+ ...+.+.|.. .++..+++.||++|.+-. | .+==|.|.|+|+|+-
T Consensus 228 ~~~-~~~~~l~g~~sL~el~ali~~a~l~I~~DS------G-p~HlAaA~~~P~i~l 276 (334)
T TIGR02195 228 LLP-GELRNLAGETSLDEAVDLIALAKAVVTNDS------G-LMHVAAALNRPLVAL 276 (334)
T ss_pred hCC-cccccCCCCCCHHHHHHHHHhCCEEEeeCC------H-HHHHHHHcCCCEEEE
Confidence 322 1123356753 789999999999996543 2 233488999999974
No 175
>PLN02207 UDP-glycosyltransferase
Probab=94.46 E-value=0.7 Score=45.92 Aligned_cols=82 Identities=13% Similarity=0.048 Sum_probs=49.1
Q ss_pred CcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeec-Cceeeeec------
Q 012132 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVN-GTTGLLHP------ 407 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~-~~~G~l~~------ 407 (470)
+++.+.+|..+ .++++...+..+=+. +--++++||+.+|+|+|+-...+ ....+.+ -+.|+-+.
T Consensus 332 ~~g~i~~W~PQ-~~IL~H~~vg~FvTH----~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~ 406 (468)
T PLN02207 332 GRGMICGWSPQ-VEILAHKAVGGFVSH----CGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVH 406 (468)
T ss_pred CCeEEEEeCCH-HHHhcccccceeeec----CccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccc
Confidence 46666687544 246666555333332 33468999999999999875433 2222222 34454221
Q ss_pred CCC-CChHHHHHHHHHHHh
Q 012132 408 VGK-EGITPLAKNIVKLAT 425 (470)
Q Consensus 408 ~~d-~~~~~la~~i~~ll~ 425 (470)
..+ .+.+++.++|.+++.
T Consensus 407 ~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 407 SDEIVNANEIETAIRCVMN 425 (468)
T ss_pred cCCcccHHHHHHHHHHHHh
Confidence 111 137899999999996
No 176
>PLN02534 UDP-glycosyltransferase
Probab=94.22 E-value=2.2 Score=42.74 Aligned_cols=82 Identities=13% Similarity=0.043 Sum_probs=49.9
Q ss_pred CcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeee-cCceeeeec------
Q 012132 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVV-NGTTGLLHP------ 407 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~-~~~~G~l~~------ 407 (470)
.++.+.|+..+ ..+++..++..+-+ .+-.++++||+++|+|+|+-...+ ....+. .-+.|+-+.
T Consensus 344 ~g~~v~~w~pq-~~iL~h~~v~~fvt----H~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~ 418 (491)
T PLN02534 344 RGLLIKGWAPQ-VLILSHPAIGGFLT----HCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVR 418 (491)
T ss_pred CCeeccCCCCH-HHHhcCCccceEEe----cCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEeccccccc
Confidence 46777788655 56788888733333 344579999999999999876432 111111 112222211
Q ss_pred ----C--C-CCChHHHHHHHHHHHh
Q 012132 408 ----V--G-KEGITPLAKNIVKLAT 425 (470)
Q Consensus 408 ----~--~-d~~~~~la~~i~~ll~ 425 (470)
. + ..+.+++++++.+++.
T Consensus 419 ~~~~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 419 WGDEERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred ccccccccCccCHHHHHHHHHHHhc
Confidence 0 0 0127899999999996
No 177
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=94.20 E-value=0.5 Score=42.71 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=56.6
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHH-HHH-HHHHHHhcCCCCcEEEec
Q 012132 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKF-ESE-LRNYVMQKKIQDRVHFVN 345 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~-~~~-l~~~~~~~~l~~~V~~~g 345 (470)
.++.+++..|.-.+.|.... +-+.++.+.+.+ ....++++|+. .. ..+ .++..+... ...+.+.|
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~--e~~~~l~~~l~~-----~~~~vvl~g~~-----~~~~~~~~~~~~~~~~-~~~~~~~~ 170 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPA--EKWAELIERLKE-----RGYRVVLLGGP-----EEQEKEIADQIAAGLQ-NPVINLAG 170 (247)
T ss_dssp TSSEEEEE---SSGGGS--H--HHHHHHHHHHCC-----CT-EEEE--SS-----HHHHHHHHHHHHTTHT-TTTEEETT
T ss_pred cCCeEEEeecCCCccccCCH--HHHHHHHHHHHh-----hCceEEEEccc-----hHHHHHHHHHHHHhcc-cceEeecC
Confidence 45677777777667777554 444444444443 23788888886 22 223 333333222 12577777
Q ss_pred cc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEec
Q 012132 346 KT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 388 (470)
Q Consensus 346 ~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s 388 (470)
.. .++..+++.||++|.+-. | .+==|.|.|+|+|+-
T Consensus 171 ~~~l~e~~ali~~a~~~I~~Dt------g-~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 171 KTSLRELAALISRADLVIGNDT------G-PMHLAAALGTPTVAL 208 (247)
T ss_dssp TS-HHHHHHHHHTSSEEEEESS------H-HHHHHHHTT--EEEE
T ss_pred CCCHHHHHHHHhcCCEEEecCC------h-HHHHHHHHhCCEEEE
Confidence 53 788899999999996654 2 344589999999986
No 178
>PLN00164 glucosyltransferase; Provisional
Probab=94.03 E-value=2.6 Score=42.27 Aligned_cols=95 Identities=12% Similarity=-0.000 Sum_probs=56.3
Q ss_pred cEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceee-ecCceeeeecCC-----
Q 012132 340 RVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIV-VNGTTGLLHPVG----- 409 (470)
Q Consensus 340 ~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v-~~~~~G~l~~~~----- 409 (470)
.+.+.++..+ ..+++..++..+-+. +--++++||+.+|+|+|+-..-+ ....+ ..-+.|+.....
T Consensus 340 g~~v~~w~PQ-~~iL~h~~vg~fvtH----~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~ 414 (480)
T PLN00164 340 GLVWPTWAPQ-KEILAHAAVGGFVTH----CGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDN 414 (480)
T ss_pred CeEEeecCCH-HHHhcCcccCeEEee----cccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCC
Confidence 3556677543 467777775333332 23468999999999999875332 22222 223456655321
Q ss_pred CCChHHHHHHHHHHHhCHH-HHHHHHHHHHH
Q 012132 410 KEGITPLAKNIVKLATHVE-RRLTMGKRGYE 439 (470)
Q Consensus 410 d~~~~~la~~i~~ll~~~~-~~~~~~~~a~~ 439 (470)
..+.++++++|.+++.+++ ..+++.+++++
T Consensus 415 ~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~ 445 (480)
T PLN00164 415 FVEAAELERAVRSLMGGGEEEGRKAREKAAE 445 (480)
T ss_pred cCcHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 1137999999999997643 23344444433
No 179
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=93.72 E-value=0.37 Score=40.44 Aligned_cols=37 Identities=8% Similarity=0.081 Sum_probs=23.5
Q ss_pred ccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhh
Q 012132 201 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELM 244 (470)
Q Consensus 201 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~ 244 (470)
...+..++.+....+.+-..+ .+|+.||+-|||++.+
T Consensus 134 ~~~D~~isPT~wQ~~~fP~~~-------r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 134 EQADAGISPTRWQRSQFPAEF-------RSKISVIHDGIDTDRF 170 (171)
T ss_pred HhCCcCcCCCHHHHHhCCHHH-------HcCcEEeecccchhhc
Confidence 344555555555544443322 2679999999999865
No 180
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=93.70 E-value=2.6 Score=39.85 Aligned_cols=99 Identities=13% Similarity=0.028 Sum_probs=57.8
Q ss_pred CCCeEEEEEeecccCCCHH--HHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEec
Q 012132 268 NEDLLFAIINSVSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~Kg~~--~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g 345 (470)
.++++++..|.-.+.|... ...+.+..+.+ .+.++++.|+++ ...+..+++.+.. .++.+.|
T Consensus 177 ~~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~---------~~~~ivl~~G~~----~e~~~~~~i~~~~---~~~~l~g 240 (322)
T PRK10964 177 AGPYLVFLHATTRDDKHWPEAHWRELIGLLAP---------SGLRIKLPWGAE----HEEQRAKRLAEGF---PYVEVLP 240 (322)
T ss_pred CCCeEEEEeCCCcccccCCHHHHHHHHHHHHH---------CCCeEEEeCCCH----HHHHHHHHHHccC---CcceecC
Confidence 3455544555434556544 44555544422 356777764331 1233333333321 3466677
Q ss_pred cc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecC
Q 012132 346 KT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389 (470)
Q Consensus 346 ~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~ 389 (470)
.. .++..+++.||++|.+-. | .+==|.|+|+|+|+-=
T Consensus 241 ~~sL~elaali~~a~l~I~nDS------G-p~HlA~A~g~p~valf 279 (322)
T PRK10964 241 KLSLEQVARVLAGAKAVVSVDT------G-LSHLTAALDRPNITLY 279 (322)
T ss_pred CCCHHHHHHHHHhCCEEEecCC------c-HHHHHHHhCCCEEEEE
Confidence 53 788999999999996553 2 3445899999999753
No 181
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=93.49 E-value=0.68 Score=44.42 Aligned_cols=102 Identities=9% Similarity=0.004 Sum_probs=61.9
Q ss_pred CCeEEEEEeecccCCCHH--HHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc
Q 012132 269 EDLLFAIINSVSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (470)
Q Consensus 269 ~~~~i~~vGrl~~~Kg~~--~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~ 346 (470)
++++++..|.-.+.|... ...+.++.+ .+ .+.+++++|+..+. .....++..+.......+.+.|.
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L----~~-----~~~~vvl~ggp~e~---e~~~~~~i~~~~~~~~~~~l~g~ 250 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDAL----QA-----RGYEVVLTSGPDKD---DLACVNEIAQGCQTPPVTALAGK 250 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHH----HH-----CCCeEEEEcCCChH---HHHHHHHHHHhcCCCccccccCC
Confidence 467777777766777654 444444444 22 46788888764211 12223344433222233556675
Q ss_pred c--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecC
Q 012132 347 T--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389 (470)
Q Consensus 347 ~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~ 389 (470)
. .++..+++.||++|..-. | .+==|.|.|+|+|+--
T Consensus 251 ~sL~el~ali~~a~l~v~nDS------G-p~HlAaA~g~P~v~lf 288 (352)
T PRK10422 251 TTFPELGALIDHAQLFIGVDS------A-PAHIAAAVNTPLICLF 288 (352)
T ss_pred CCHHHHHHHHHhCCEEEecCC------H-HHHHHHHcCCCEEEEE
Confidence 3 789999999999996543 2 2334789999999753
No 182
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=93.43 E-value=2.4 Score=38.68 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=30.6
Q ss_pred cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCC
Q 012132 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA 390 (470)
Q Consensus 347 ~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~ 390 (470)
..++..+++.+|++|....+ ..+=|+++|+|+|+-+.
T Consensus 248 ~~~~~~~~~~~~~~Is~RlH-------~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 248 PDELLELISQADLVISMRLH-------GAILALSLGVPVIAISY 284 (286)
T ss_pred HHHHHHHHhcCCEEEecCCH-------HHHHHHHcCCCEEEEec
Confidence 37889999999999977763 56779999999998653
No 183
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=93.36 E-value=1.3 Score=42.51 Aligned_cols=108 Identities=13% Similarity=0.142 Sum_probs=64.2
Q ss_pred HHHHcCCC-CCCeEEEEEeec-ccCCCHH--HHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhc
Q 012132 260 VRESLGVR-NEDLLFAIINSV-SRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK 335 (470)
Q Consensus 260 ~r~~~~~~-~~~~~i~~vGrl-~~~Kg~~--~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~ 335 (470)
+...+++. .+.++++..|.- .+.|... .+.+.++.+.+ .+++++++|+. +..+..++..+..
T Consensus 170 ~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~---------~~~~vvl~Gg~-----~e~~~~~~i~~~~ 235 (348)
T PRK10916 170 TCAAFSLSSERPIIGFCPGAEFGPAKRWPHYHYAELAQQLID---------EGYQVVLFGSA-----KDHEAGNEILAAL 235 (348)
T ss_pred HHHHcCCCCCCCEEEEeCCCCCccccCCCHHHHHHHHHHHHH---------CCCeEEEEeCH-----HhHHHHHHHHHhc
Confidence 44555553 345666666653 3567544 44444444422 46788888875 2333444444443
Q ss_pred CCC--Cc-EEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEec
Q 012132 336 KIQ--DR-VHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 388 (470)
Q Consensus 336 ~l~--~~-V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s 388 (470)
+-. .+ +.+.|.. .++..+++.||++|-+-. | .+==|.|.|+|+|+-
T Consensus 236 ~~~~~~~~~~l~g~~sL~el~ali~~a~l~I~nDT------G-p~HlAaA~g~P~val 286 (348)
T PRK10916 236 NTEQQAWCRNLAGETQLEQAVILIAACKAIVTNDS------G-LMHVAAALNRPLVAL 286 (348)
T ss_pred ccccccceeeccCCCCHHHHHHHHHhCCEEEecCC------h-HHHHHHHhCCCEEEE
Confidence 211 12 4555653 788999999999996543 2 233588999999974
No 184
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=93.30 E-value=0.9 Score=37.51 Aligned_cols=128 Identities=13% Similarity=0.077 Sum_probs=66.2
Q ss_pred cEEEEEeeccCCCchh-HHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCcE
Q 012132 75 KLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADL 153 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~-~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 153 (470)
||||++.+.+ ||.- ..+..|++.+ .|+++++|..+..- .++..|-.+.- .+.+.....+|+
T Consensus 1 M~ILlle~y~--ggSHk~~~~~L~~~~---~~~~~lltLP~r~w----------~WRmRg~AL~~---a~~~~~~~~~dl 62 (168)
T PF12038_consen 1 MRILLLEPYY--GGSHKQWADGLAAHS---EHEWTLLTLPARKW----------HWRMRGAALYF---AQQIPLSHSYDL 62 (168)
T ss_pred CeEEEEcccc--ccCHHHHHHHHHHhc---cCCEEEEEcCCCcc----------ccccCCCHHHH---hhccccccCCCE
Confidence 7999999876 3432 3344444444 48999999644321 11122221111 133444567899
Q ss_pred EEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchh---------hhhc--ccccccceeeeehhhHHHHHHhhh
Q 012132 154 IVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL---------DYVK--HLPLVAGAMIDSHVTAEYWKNRTR 222 (470)
Q Consensus 154 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~---------~~~~--~~~~~~~~~~~s~~~~~~~~~~~~ 222 (470)
|++.+.....-+..+.. .. ..+|.+.+.|+-.-.|-.. .+.. ..--+|.++.+|..-.+.+.+...
T Consensus 63 l~aTsmldLa~l~gL~p-~l--~~~p~ilYFHENQl~YP~~~~~~rd~~~~~~ni~saLaAD~v~FNS~~nr~sFL~~~~ 139 (168)
T PF12038_consen 63 LFATSMLDLATLRGLRP-DL--ANVPKILYFHENQLAYPVSPGQERDFQYGMNNIYSALAADRVVFNSAFNRDSFLDGIP 139 (168)
T ss_pred EEeeccccHHHHHhhcc-CC--CCCCEEEEEecCcccCCCCCCccccccHHHHHHHHHHhceeeeecchhhHHHHHHHHH
Confidence 99987543322222221 11 2257778899754322110 0111 112456777788777766665544
Q ss_pred h
Q 012132 223 E 223 (470)
Q Consensus 223 ~ 223 (470)
.
T Consensus 140 ~ 140 (168)
T PF12038_consen 140 S 140 (168)
T ss_pred H
Confidence 3
No 185
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=92.97 E-value=0.32 Score=36.69 Aligned_cols=78 Identities=10% Similarity=0.221 Sum_probs=53.3
Q ss_pred EEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEec----cc-C--CHHHHHHhcCEEEEccCCccccc---chHHHHHHh
Q 012132 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN----KT-L--TVAPYLAAIDVLVQNSQAWGECF---GRITIEAMA 380 (470)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g----~~-~--~~~~~~~~aDv~v~pS~~~~E~~---g~~~lEAma 380 (470)
++|+|+-. .....+++.++++|.. .+.+ | .. . .+...+..+|++|++.. .=+- -.+--+|-.
T Consensus 2 vliVGG~~----~~~~~~~~~~~~~G~~-~~~h-g~~~~~~~~~~~l~~~i~~aD~VIv~t~--~vsH~~~~~vk~~akk 73 (97)
T PF10087_consen 2 VLIVGGRE----DRERRYKRILEKYGGK-LIHH-GRDGGDEKKASRLPSKIKKADLVIVFTD--YVSHNAMWKVKKAAKK 73 (97)
T ss_pred EEEEcCCc----ccHHHHHHHHHHcCCE-EEEE-ecCCCCccchhHHHHhcCCCCEEEEEeC--CcChHHHHHHHHHHHH
Confidence 57788721 3788899999998864 3333 3 22 3 37888999999998865 2222 233447888
Q ss_pred cCCCEEecCCCCccee
Q 012132 381 FQLPVLGTAAGGTTEI 396 (470)
Q Consensus 381 ~G~PvI~s~~~g~~e~ 396 (470)
.|+|++.++..|...+
T Consensus 74 ~~ip~~~~~~~~~~~l 89 (97)
T PF10087_consen 74 YGIPIIYSRSRGVSSL 89 (97)
T ss_pred cCCcEEEECCCCHHHH
Confidence 9999999986665443
No 186
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=92.94 E-value=9 Score=36.68 Aligned_cols=100 Identities=17% Similarity=0.105 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceee
Q 012132 324 FESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIV 397 (470)
Q Consensus 324 ~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v 397 (470)
...-.+..+....-.+++.+.... +++-..++++|+.|-.-.+ +++=||+.|+|+|+-.... +.+-+
T Consensus 251 d~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~H-------saI~al~~g~p~i~i~Y~~K~~~l~~~~ 323 (385)
T COG2327 251 DLAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRLH-------SAIMALAFGVPAIAIAYDPKVRGLMQDL 323 (385)
T ss_pred hhHHHHHHHhhcCCccceEeecchHHHHHHHHhccCceEEeehhH-------HHHHHHhcCCCeEEEeecHHHHHHHHHc
Confidence 344444444444333567666542 4566689999998855442 4666999999999875432 33323
Q ss_pred ecCceeeeecCCCCChHHHHHHHHHHHhC-HHHHHH
Q 012132 398 VNGTTGLLHPVGKEGITPLAKNIVKLATH-VERRLT 432 (470)
Q Consensus 398 ~~~~~G~l~~~~d~~~~~la~~i~~ll~~-~~~~~~ 432 (470)
+..++..+..+.+.+.+.+...+.+.+ ++++++
T Consensus 324 --gl~~~~~~i~~~~~~~l~~~~~e~~~~~~~~~~~ 357 (385)
T COG2327 324 --GLPGFAIDIDPLDAEILSAVVLERLTKLDELRER 357 (385)
T ss_pred --CCCcccccCCCCchHHHHHHHHHHHhccHHHHhh
Confidence 444566666655588888888887774 444443
No 187
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=92.83 E-value=1.4 Score=44.48 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=53.5
Q ss_pred CcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCC-CC---cc-eeeecCceeeeecCCCCCh
Q 012132 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA-GG---TT-EIVVNGTTGLLHPVGKEGI 413 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~-~g---~~-e~v~~~~~G~l~~~~d~~~ 413 (470)
.+|.+.+|..+..-++..-.+..+=++ -|++ +++|++.+|+|+|+... +. .. -+.+.+..+.+.. .+...
T Consensus 335 ~nV~~~~W~PQ~~lll~H~~v~~FvTH---gG~n-St~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~-~~~~~ 409 (496)
T KOG1192|consen 335 GNVVLSKWAPQNDLLLDHPAVGGFVTH---GGWN-STLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDK-RDLVS 409 (496)
T ss_pred CceEEecCCCcHHHhcCCCcCcEEEEC---Cccc-HHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEeh-hhcCc
Confidence 478888887665444333323333342 4444 45999999999996542 22 23 3333444444433 33223
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHH
Q 012132 414 TPLAKNIVKLATHVERRLTMGKR 436 (470)
Q Consensus 414 ~~la~~i~~ll~~~~~~~~~~~~ 436 (470)
..+.+++..++.+++..+...+-
T Consensus 410 ~~~~~~~~~il~~~~y~~~~~~l 432 (496)
T KOG1192|consen 410 EELLEAIKEILENEEYKEAAKRL 432 (496)
T ss_pred HHHHHHHHHHHcChHHHHHHHHH
Confidence 44888999998887755444333
No 188
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=92.62 E-value=3.9 Score=38.51 Aligned_cols=98 Identities=15% Similarity=0.063 Sum_probs=59.9
Q ss_pred CCCeEEEEEeecccCCCHH--HHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEec
Q 012132 268 NEDLLFAIINSVSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~Kg~~--~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g 345 (470)
+++.+++..|.-.+.|... ...+.+..+.+ .+.+++++|+++ ...+..+++.+..+ +..+.|
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~---------~~~~~vl~~g~~----~e~~~~~~i~~~~~---~~~l~g 241 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLA---------RGLQIVLPWGND----AEKQRAERIAEALP---GAVVLP 241 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHH---------CCCeEEEeCCCH----HHHHHHHHHHhhCC---CCeecC
Confidence 3556667777555677653 55555554432 357788875541 23334444444332 234567
Q ss_pred cc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEec
Q 012132 346 KT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 388 (470)
Q Consensus 346 ~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s 388 (470)
.. .++..+++.||++|.+-. | .+==|.|.|+|+|+-
T Consensus 242 ~~sL~el~ali~~a~l~I~~DS------g-p~HlAaa~g~P~i~l 279 (319)
T TIGR02193 242 KMSLAEVAALLAGADAVVGVDT------G-LTHLAAALDKPTVTL 279 (319)
T ss_pred CCCHHHHHHHHHcCCEEEeCCC------h-HHHHHHHcCCCEEEE
Confidence 53 788999999999996543 2 233477899999975
No 189
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=92.59 E-value=1.9 Score=41.13 Aligned_cols=102 Identities=10% Similarity=-0.011 Sum_probs=60.7
Q ss_pred CCCeEEEEEeecccCCCHH--HHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEec
Q 012132 268 NEDLLFAIINSVSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~Kg~~--~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g 345 (470)
.+.++++..|.-.+.|... ...+.++.+ .+ .+..++++|+..+. ..+..++..+..+-+..+.+.|
T Consensus 180 ~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l----~~-----~~~~ivl~g~p~~~---e~~~~~~i~~~~~~~~~~~l~g 247 (344)
T TIGR02201 180 GQNYIVIQPTSRWFFKCWDNDRFSALIDAL----HA-----RGYEVVLTSGPDKD---ELAMVNEIAQGCQTPRVTSLAG 247 (344)
T ss_pred CCCEEEEeCCCCccccCCCHHHHHHHHHHH----Hh-----CCCeEEEecCCCHH---HHHHHHHHHhhCCCCcccccCC
Confidence 3456666667655666543 444444443 22 35788898864211 1222344333333222345667
Q ss_pred cc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEec
Q 012132 346 KT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 388 (470)
Q Consensus 346 ~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s 388 (470)
.. .++..+++.||++|-+-. | .+==|.|.|+|+|+-
T Consensus 248 ~~sL~el~ali~~a~l~Vs~DS------G-p~HlAaA~g~p~v~L 285 (344)
T TIGR02201 248 KLTLPQLAALIDHARLFIGVDS------V-PMHMAAALGTPLVAL 285 (344)
T ss_pred CCCHHHHHHHHHhCCEEEecCC------H-HHHHHHHcCCCEEEE
Confidence 53 789999999999996543 2 344589999999975
No 190
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=91.25 E-value=5 Score=32.52 Aligned_cols=99 Identities=10% Similarity=0.132 Sum_probs=60.1
Q ss_pred CeEEEEEeecccCCCHHHHHHHH--HHHHHHHHhhcccCCceEEE-EEeCCCCcChHHHHHHHHHHHhcCCCCcEEEec-
Q 012132 270 DLLFAIINSVSRGKGQDLFLHSF--YESLELIKEKKLEVPSVHAV-IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN- 345 (470)
Q Consensus 270 ~~~i~~vGrl~~~Kg~~~ll~a~--~~l~~~l~~~~~~~~~~~l~-ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g- 345 (470)
..+++.+|.-. .|.++.+. ....+.+.+.| =.+|+ =+|.|....+ +......+. ..+.+.|
T Consensus 4 ~~vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~G----~~kLiiQ~Grg~~~~~---d~~~~~~k~----~gl~id~y 68 (170)
T KOG3349|consen 4 MTVFVTVGTTS----FDDLISCVLSEEFLQELQKRG----FTKLIIQIGRGQPFFG---DPIDLIRKN----GGLTIDGY 68 (170)
T ss_pred eEEEEEecccc----HHHHHHHHcCHHHHHHHHHcC----ccEEEEEecCCccCCC---CHHHhhccc----CCeEEEEE
Confidence 35677788532 78888775 34455555542 22444 3576632211 111211122 2345555
Q ss_pred -ccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecC
Q 012132 346 -KTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389 (470)
Q Consensus 346 -~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~ 389 (470)
+...+.++++.||+++ .-+-..+++|-+..|+|.|+.-
T Consensus 69 ~f~psl~e~I~~AdlVI------sHAGaGS~letL~l~KPlivVv 107 (170)
T KOG3349|consen 69 DFSPSLTEDIRSADLVI------SHAGAGSCLETLRLGKPLIVVV 107 (170)
T ss_pred ecCccHHHHHhhccEEE------ecCCcchHHHHHHcCCCEEEEe
Confidence 4589999999999999 3333558999999999988753
No 191
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=90.16 E-value=0.98 Score=38.10 Aligned_cols=82 Identities=13% Similarity=0.080 Sum_probs=51.0
Q ss_pred hhHHhhcCCcEEEEcccchhhh-HHHHhhhcCCccccceeeEEeee---ccccchhhhhcccccccceeeeehhhHHHHH
Q 012132 143 ETINTALKADLIVLNTAVAGKW-LDAVLKEDVPRVLPNVLWWIHEM---RGHYFKLDYVKHLPLVAGAMIDSHVTAEYWK 218 (470)
Q Consensus 143 ~~~~~~~~~DiV~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 218 (470)
..+.++.+||+|++..+..... +..+...+.. ..++++..+.+. +..| .-+..|..++.+..+.+.+.
T Consensus 82 ~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~-~~~p~~tvvTD~~~~H~~W-------~~~~~D~y~Vase~~~~~l~ 153 (169)
T PF06925_consen 82 IRLLREFQPDLIISTHPFPAQVPLSRLKRRGRL-PNIPVVTVVTDFDTVHPFW-------IHPGVDRYFVASEEVKEELI 153 (169)
T ss_pred HHHHhhcCCCEEEECCcchhhhHHHHHHHhhcc-cCCcEEEEEcCCCCCCcCe-------ecCCCCEEEECCHHHHHHHH
Confidence 3455679999999999887666 5544333321 113444444443 2222 22567888888888766665
Q ss_pred HhhhhhhccCCCceEEEec
Q 012132 219 NRTRERLRIKMPDTYVVHL 237 (470)
Q Consensus 219 ~~~~~~~~~~~~~i~vi~n 237 (470)
..|++++++.+..-
T Consensus 154 -----~~Gi~~~~I~vtGi 167 (169)
T PF06925_consen 154 -----ERGIPPERIHVTGI 167 (169)
T ss_pred -----HcCCChhHEEEeCc
Confidence 46999998887543
No 192
>PLN03015 UDP-glucosyl transferase
Probab=90.10 E-value=6 Score=39.40 Aligned_cols=80 Identities=11% Similarity=0.050 Sum_probs=47.4
Q ss_pred EEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceee-ecCceeeeec----CCCC
Q 012132 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIV-VNGTTGLLHP----VGKE 411 (470)
Q Consensus 341 V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v-~~~~~G~l~~----~~d~ 411 (470)
+.+.++..+. ++++...+..+-+. +--++++||+.+|+|+|+-...+ ....+ +.-+.|+-+. .+..
T Consensus 337 l~v~~W~PQ~-~vL~h~~vg~fvtH----~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v 411 (470)
T PLN03015 337 LVVTQWAPQV-EILSHRSIGGFLSH----CGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVI 411 (470)
T ss_pred eEEEecCCHH-HHhccCccCeEEec----CCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCcc
Confidence 5566775443 45666555333332 33468999999999999975432 12222 2223444442 1112
Q ss_pred ChHHHHHHHHHHHh
Q 012132 412 GITPLAKNIVKLAT 425 (470)
Q Consensus 412 ~~~~la~~i~~ll~ 425 (470)
+.+++++++.+++.
T Consensus 412 ~~e~i~~~v~~lm~ 425 (470)
T PLN03015 412 GREEVASLVRKIVA 425 (470)
T ss_pred CHHHHHHHHHHHHc
Confidence 37899999999995
No 193
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=89.33 E-value=1.5 Score=36.99 Aligned_cols=81 Identities=21% Similarity=0.173 Sum_probs=48.7
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHH-hhcCC
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-TALKA 151 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 151 (470)
+..+|++++..-..|| -..-+++.|.++|++|.++...+..............+...++.+.......... ...++
T Consensus 24 ~~~~v~il~G~GnNGg---Dgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 100 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGG---DGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPA 100 (169)
T ss_dssp TT-EEEEEE-SSHHHH---HHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCE
T ss_pred CCCeEEEEECCCCChH---HHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhcccccc
Confidence 3568999886544444 5667899999999999997654444444434444556667777776644433221 22367
Q ss_pred cEEEE
Q 012132 152 DLIVL 156 (470)
Q Consensus 152 DiV~~ 156 (470)
|+|+=
T Consensus 101 dlIID 105 (169)
T PF03853_consen 101 DLIID 105 (169)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77763
No 194
>PRK09739 hypothetical protein; Provisional
Probab=89.03 E-value=1.7 Score=37.86 Aligned_cols=42 Identities=14% Similarity=0.054 Sum_probs=32.8
Q ss_pred ccccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecC
Q 012132 72 MKSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|++||||+|..+...+|. ...+..+++.+.+.|++|.++-..
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~ 43 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLY 43 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 457899999877655554 577888889999999999988743
No 195
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=88.37 E-value=1.3 Score=35.79 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=29.7
Q ss_pred chhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC
Q 012132 88 GGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK 140 (470)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (470)
|--.=...++++|+++||||.+.+... +.......|+.+.+..
T Consensus 10 Ghv~P~lala~~L~~rGh~V~~~~~~~----------~~~~v~~~Gl~~~~~~ 52 (139)
T PF03033_consen 10 GHVYPFLALARALRRRGHEVRLATPPD----------FRERVEAAGLEFVPIP 52 (139)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEETGG----------GHHHHHHTT-EEEESS
T ss_pred hHHHHHHHHHHHHhccCCeEEEeeccc----------ceecccccCceEEEec
Confidence 334668899999999999999888542 3455567777776654
No 196
>PRK06988 putative formyltransferase; Provisional
Probab=86.58 E-value=2.7 Score=39.46 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=47.2
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchh-HHHhhhhhhhhcceeeEecCC-----hhhHHh
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE-VIYSLEHKMWDRGVQVISAKG-----QETINT 147 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 147 (470)
||||+|+.+. .+.....+.|.+.|++|..+....+..... ....+.....+.|++++.... .....+
T Consensus 2 ~mkIvf~Gs~-------~~a~~~L~~L~~~~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~~~~~~~~~~~l~ 74 (312)
T PRK06988 2 KPRAVVFAYH-------NVGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPADPNDPELRAAVA 74 (312)
T ss_pred CcEEEEEeCc-------HHHHHHHHHHHhCCCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccccCCCHHHHHHHH
Confidence 4899998753 356666777777899987666443322111 111344556677888765322 223456
Q ss_pred hcCCcEEEEcc
Q 012132 148 ALKADLIVLNT 158 (470)
Q Consensus 148 ~~~~DiV~~~~ 158 (470)
..+||++++..
T Consensus 75 ~~~~Dliv~~~ 85 (312)
T PRK06988 75 AAAPDFIFSFY 85 (312)
T ss_pred hcCCCEEEEeh
Confidence 78999998754
No 197
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=86.27 E-value=20 Score=34.93 Aligned_cols=87 Identities=11% Similarity=0.066 Sum_probs=50.1
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchH---HH-HHHhcCCC
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRI---TI-EAMAFQLP 384 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~---~l-EAma~G~P 384 (470)
.++.|++.- .+.-++++++++. ... ..+++..++..+|+++..+- .+-++. .+ +|+.-...
T Consensus 203 ~~i~IaNRT-------~erA~~La~~~~~----~~~-~l~el~~~l~~~DvVissTs---a~~~ii~~~~ve~a~~~r~~ 267 (414)
T COG0373 203 KKITIANRT-------LERAEELAKKLGA----EAV-ALEELLEALAEADVVISSTS---APHPIITREMVERALKIRKR 267 (414)
T ss_pred CEEEEEcCC-------HHHHHHHHHHhCC----eee-cHHHHHHhhhhCCEEEEecC---CCccccCHHHHHHHHhcccC
Confidence 455666653 4455666776651 111 12789999999999987764 333333 22 44454455
Q ss_pred EEecCCCCcceeeec---CceeeeecCCC
Q 012132 385 VLGTAAGGTTEIVVN---GTTGLLHPVGK 410 (470)
Q Consensus 385 vI~s~~~g~~e~v~~---~~~G~l~~~~d 410 (470)
.+..|.+-.+++-.+ -.+-++++-+|
T Consensus 268 ~livDiavPRdie~~v~~l~~v~l~~iDD 296 (414)
T COG0373 268 LLIVDIAVPRDVEPEVGELPNVFLYTIDD 296 (414)
T ss_pred eEEEEecCCCCCCccccCcCCeEEEehhh
Confidence 678887776665322 12336666444
No 198
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=85.39 E-value=0.82 Score=42.69 Aligned_cols=69 Identities=13% Similarity=0.089 Sum_probs=47.4
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcC-CCEEecCC--CCcceeeecCceeeeecCCCCChHHHHHHH
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQ-LPVLGTAA--GGTTEIVVNGTTGLLHPVGKEGITPLAKNI 420 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G-~PvI~s~~--~g~~e~v~~~~~G~l~~~~d~~~~~la~~i 420 (470)
.+..+.|+.+..++.|.- ...+..-+.|||++| +|||.++. -...+++.=....+.++..+ ..+|.+.|
T Consensus 228 ~~~~~~l~~S~FCL~p~G--~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~--~~~l~~iL 299 (302)
T PF03016_consen 228 SEYMELLRNSKFCLCPRG--DGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEAD--LPELPEIL 299 (302)
T ss_pred hHHHHhcccCeEEEECCC--CCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHH--HHHHHHHH
Confidence 346788999999999875 445788999999999 57777662 23566664455566666554 54444444
No 199
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=84.84 E-value=2.2 Score=34.00 Aligned_cols=38 Identities=11% Similarity=-0.026 Sum_probs=31.6
Q ss_pred cEEEEEeeccCCCch-hHHHHHHHHHHHhCCce-EEEEec
Q 012132 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVGTK-VNWITI 112 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~-V~v~~~ 112 (470)
||++++....|.|+. .+...++++++.+.||+ |.||-.
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~ 40 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFY 40 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEe
Confidence 689999988777655 68899999999999999 477763
No 200
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=84.12 E-value=4.5 Score=32.06 Aligned_cols=44 Identities=14% Similarity=0.128 Sum_probs=31.8
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCc
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT 393 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~ 393 (470)
+++.+++..+|++|--|. .+..--.+-.++.+|+|+|..-.|..
T Consensus 59 ~~l~~~~~~~DVvIDfT~--p~~~~~~~~~~~~~g~~~ViGTTG~~ 102 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTN--PDAVYDNLEYALKHGVPLVIGTTGFS 102 (124)
T ss_dssp S-HHHHTTH-SEEEEES---HHHHHHHHHHHHHHT-EEEEE-SSSH
T ss_pred hhHHHhcccCCEEEEcCC--hHHhHHHHHHHHhCCCCEEEECCCCC
Confidence 678899999999998887 66666667788999999998776654
No 201
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=83.97 E-value=13 Score=37.22 Aligned_cols=95 Identities=13% Similarity=0.068 Sum_probs=64.3
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcC-CCEEecCC--CCcceeeecCceeeeecCCCCChHHHHHHHHHHH
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQ-LPVLGTAA--GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 424 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G-~PvI~s~~--~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 424 (470)
....+.++.+..++.|.- .+...-.+.||+.+| +|||.+|. ....++++-.+.++.++..+ +..+ |.+.|
T Consensus 335 ~~y~~~m~~S~FCL~p~G--d~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~~~~--v~~~---~~~iL 407 (464)
T KOG1021|consen 335 LNYMEGMQDSKFCLCPPG--DTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVPEKD--VPEL---IKNIL 407 (464)
T ss_pred chHHHHhhcCeEEECCCC--CCcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEEHHH--hhhH---HHHHH
Confidence 567788999999999997 777778999999999 58888874 34556665556677777333 5555 33333
Q ss_pred h--CHHHHHHHHHHHHHHHHHHcChhH
Q 012132 425 T--HVERRLTMGKRGYERVKEIFQEHH 449 (470)
Q Consensus 425 ~--~~~~~~~~~~~a~~~~~~~fs~~~ 449 (470)
. ..+....|.++....+.++|.+..
T Consensus 408 ~~i~~~~~~~m~~~v~~~v~r~~~~~~ 434 (464)
T KOG1021|consen 408 LSIPEEEVLRMRENVIRLVPRHFLKKP 434 (464)
T ss_pred HhcCHHHHHHHHHHHHHHHHhhEEeCC
Confidence 3 233445666665555666665543
No 202
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=83.27 E-value=2.6 Score=36.46 Aligned_cols=39 Identities=18% Similarity=0.098 Sum_probs=29.4
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (470)
||||+...+-.- +.-+..|+++|++.||+|.|+++...+
T Consensus 1 M~ILlTNDDGi~---a~Gi~aL~~~L~~~g~~V~VvAP~~~~ 39 (196)
T PF01975_consen 1 MRILLTNDDGID---APGIRALAKALSALGHDVVVVAPDSEQ 39 (196)
T ss_dssp SEEEEE-SS-TT---SHHHHHHHHHHTTTSSEEEEEEESSST
T ss_pred CeEEEEcCCCCC---CHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 799998875332 356889999998889999999976554
No 203
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=83.11 E-value=4 Score=41.18 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=27.1
Q ss_pred EEEEEeeccCCCch-------hHHHHHHHHHHHhCC-ceEEEEec
Q 012132 76 LVLLVSHELSLSGG-------PLLLMELAFLLRGVG-TKVNWITI 112 (470)
Q Consensus 76 kIl~v~~~~~~~G~-------~~~~~~l~~~L~~~G-~~V~v~~~ 112 (470)
||++|.+.+..+|. +.-+..+|..|.+.| |+|.++-.
T Consensus 1 ~illi~P~~~~~~~~~~~~~pPlgl~~lAa~L~~~G~~~V~iiD~ 45 (497)
T TIGR02026 1 RILILNPNYHAGGAEIAGQWPPLWVAYIGGALLDAGYHDVTFLDA 45 (497)
T ss_pred CeEEEcCCCCccccccCCCcCCHHHHHHHHHHHhcCCcceEEecc
Confidence 58888876654442 234677888899999 89999853
No 204
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=83.02 E-value=14 Score=32.40 Aligned_cols=86 Identities=13% Similarity=0.153 Sum_probs=54.8
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhc-CCCCcEEEecccCCHHHHHHhcCEEEEccCC-------ccc-ccchHHHH
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQA-------WGE-CFGRITIE 377 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~-~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~-------~~E-~~g~~~lE 377 (470)
.+.++.++.......+++...+.+..+++ |....+...-..++..+.+..||++++|-=+ +.+ ++.-.+-+
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~ 109 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGGNTFNLLAQWREHGLDAILKA 109 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCchHHHHHHHHHHcCHHHHHHH
Confidence 46788998887654445677777777777 7642222211235778899999999988531 111 22233446
Q ss_pred HHhcCCCEEecCCCC
Q 012132 378 AMAFQLPVLGTAAGG 392 (470)
Q Consensus 378 Ama~G~PvI~s~~~g 392 (470)
+...|+|++.+..|.
T Consensus 110 ~~~~g~~i~G~SAGa 124 (212)
T cd03146 110 ALERGVVYIGWSAGS 124 (212)
T ss_pred HHHCCCEEEEECHhH
Confidence 667899999886554
No 205
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=82.24 E-value=24 Score=34.56 Aligned_cols=72 Identities=4% Similarity=-0.064 Sum_probs=42.8
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecC
Q 012132 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389 (470)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~ 389 (470)
.+.|+... .+.-++++++++- .....+ +++...+..+|+++..+. -+-++.- ..+.-+.|.+.-|
T Consensus 207 ~I~V~nRt-------~~ra~~La~~~~~---~~~~~~-~~l~~~l~~aDiVI~aT~---a~~~vi~-~~~~~~~~~~~iD 271 (414)
T PRK13940 207 QIMLANRT-------IEKAQKITSAFRN---ASAHYL-SELPQLIKKADIIIAAVN---VLEYIVT-CKYVGDKPRVFID 271 (414)
T ss_pred EEEEECCC-------HHHHHHHHHHhcC---CeEecH-HHHHHHhccCCEEEECcC---CCCeeEC-HHHhCCCCeEEEE
Confidence 56666664 2334555555431 112222 567888999999998875 2333332 3344678999888
Q ss_pred CCCccee
Q 012132 390 AGGTTEI 396 (470)
Q Consensus 390 ~~g~~e~ 396 (470)
.+-.+++
T Consensus 272 LavPRdi 278 (414)
T PRK13940 272 ISIPQAL 278 (414)
T ss_pred eCCCCCC
Confidence 7665555
No 206
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=81.14 E-value=6.8 Score=34.03 Aligned_cols=74 Identities=14% Similarity=0.118 Sum_probs=45.3
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCC--ceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC--C--------
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--G-------- 141 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------- 141 (470)
||||+++.+ |....+..+.+++.+.+ ++|.++....+.. .......+.|++++... .
T Consensus 1 m~ki~vl~s-----g~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~------~~~~~a~~~gIp~~~~~~~~~~~~~~~~ 69 (200)
T PRK05647 1 MKRIVVLAS-----GNGSNLQAIIDACAAGQLPAEIVAVISDRPDA------YGLERAEAAGIPTFVLDHKDFPSREAFD 69 (200)
T ss_pred CceEEEEEc-----CCChhHHHHHHHHHcCCCCcEEEEEEecCccc------hHHHHHHHcCCCEEEECccccCchhHhH
Confidence 478999885 44467788888888765 5666544332221 12444566788776522 1
Q ss_pred --hhhHHhhcCCcEEEEcc
Q 012132 142 --QETINTALKADLIVLNT 158 (470)
Q Consensus 142 --~~~~~~~~~~DiV~~~~ 158 (470)
.....+..+||++++..
T Consensus 70 ~~~~~~l~~~~~D~iv~~~ 88 (200)
T PRK05647 70 AALVEALDAYQPDLVVLAG 88 (200)
T ss_pred HHHHHHHHHhCcCEEEhHH
Confidence 12334568999998853
No 207
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=80.97 E-value=4.8 Score=33.07 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=32.6
Q ss_pred cEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecCC
Q 012132 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
|||+++.......|. ...+..+++.+.+.|+++.++-...
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~ 41 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLAD 41 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTT
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 799999987766665 6888889999999999999997554
No 208
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=79.75 E-value=12 Score=29.41 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=24.6
Q ss_pred HHHHHhcCEEEEccCCcccccc--hH---HHHHHhcCCCEEecCCCC
Q 012132 351 APYLAAIDVLVQNSQAWGECFG--RI---TIEAMAFQLPVLGTAAGG 392 (470)
Q Consensus 351 ~~~~~~aDv~v~pS~~~~E~~g--~~---~lEAma~G~PvI~s~~~g 392 (470)
..++..||++|.-- .|-+- ++ .--|.|.|+|.|.-.-..
T Consensus 67 ~~li~~aDvVVvrF---GekYKQWNaAfDAg~a~AlgKplI~lh~~~ 110 (141)
T PF11071_consen 67 RTLIEKADVVVVRF---GEKYKQWNAAFDAGYAAALGKPLITLHPEE 110 (141)
T ss_pred HHHHhhCCEEEEEe---chHHHHHHHHhhHHHHHHcCCCeEEecchh
Confidence 34688999988543 22221 22 335789999999876444
No 209
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.10 E-value=59 Score=31.22 Aligned_cols=168 Identities=11% Similarity=0.128 Sum_probs=99.9
Q ss_pred EEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCC--cChHHHHHHHHHHHhcCCCCcEEEecc--c-
Q 012132 273 FAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMN--AQTKFESELRNYVMQKKIQDRVHFVNK--T- 347 (470)
Q Consensus 273 i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~--~~~~~~~~l~~~~~~~~l~~~V~~~g~--~- 347 (470)
+=|.|+.+..+-...+.+...+.++ .++.++|+-...- .+....+++.+..+..+ +++|.|.-. .
T Consensus 157 iP~ygsyte~dpv~ia~egv~~fKk---------e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~-Pd~vi~VmDasiG 226 (483)
T KOG0780|consen 157 VPFYGSYTEADPVKIASEGVDRFKK---------ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIK-PDEIIFVMDASIG 226 (483)
T ss_pred CeeEecccccchHHHHHHHHHHHHh---------cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcC-CCeEEEEEecccc
Confidence 4456777888888888888888755 7888888875322 12346677777777666 567777542 1
Q ss_pred ---CCHH-HHHHhcCE--EEEccCCc--ccccchHHHHHHhcCCCEEecCCCCcceeeecCc----eeeeecCCCCChHH
Q 012132 348 ---LTVA-PYLAAIDV--LVQNSQAW--GECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGT----TGLLHPVGKEGITP 415 (470)
Q Consensus 348 ---~~~~-~~~~~aDv--~v~pS~~~--~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~----~G~l~~~~d~~~~~ 415 (470)
++-+ .+=...|+ ++++-... .-|..++.. .+.++||+--..|..-+-++... .+-+.--+| ++.
T Consensus 227 Qaae~Qa~aFk~~vdvg~vIlTKlDGhakGGgAlSaV--aaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGD--i~g 302 (483)
T KOG0780|consen 227 QAAEAQARAFKETVDVGAVILTKLDGHAKGGGALSAV--AATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGD--IEG 302 (483)
T ss_pred HhHHHHHHHHHHhhccceEEEEecccCCCCCceeeeh--hhhCCCEEEEecCccccccCCCChHHHHHHHhcccc--HHH
Confidence 2223 33344554 45554320 122234444 45789999877665444332211 133445577 999
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Q 012132 416 LAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 416 la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 459 (470)
|.+.+.++..+. .+++-++- -..+|+...+.+++-.+.+
T Consensus 303 lvek~~ev~~~d--~~el~~kl---~~gkFtlrd~y~Qfq~imk 341 (483)
T KOG0780|consen 303 LVEKVQEVGKDD--AKELVEKL---KQGKFTLRDFYDQFQNIMK 341 (483)
T ss_pred HHHHHHHHhhhh--HHHHHHHH---HhCCccHHHHHHHHHHHHh
Confidence 999999987321 12222221 2246998888888876654
No 210
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=78.74 E-value=28 Score=31.01 Aligned_cols=82 Identities=13% Similarity=0.147 Sum_probs=53.4
Q ss_pred eEEEEEeCCC--CcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCC--------cccccchHHHHH
Q 012132 309 VHAVIIGSDM--NAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQA--------WGECFGRITIEA 378 (470)
Q Consensus 309 ~~l~ivG~g~--~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~--------~~E~~g~~~lEA 378 (470)
-++.++..-. ....+|.+..++..+++|.. +..+-..++..+.+..+|+++++-=+ ..-++--.+-|+
T Consensus 32 ~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~--v~~l~~~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~ 109 (233)
T PRK05282 32 RKAVFIPYAGVTQSWDDYTAKVAEALAPLGIE--VTGIHRVADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREA 109 (233)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHHHCCCE--EEEeccchhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHH
Confidence 3566665433 22335677788888888874 54444446677889999988876521 011223345689
Q ss_pred HhcCCCEEecCCCC
Q 012132 379 MAFQLPVLGTAAGG 392 (470)
Q Consensus 379 ma~G~PvI~s~~~g 392 (470)
...|+|++.+..|.
T Consensus 110 ~~~G~~~~G~SAGA 123 (233)
T PRK05282 110 VKNGTPYIGWSAGA 123 (233)
T ss_pred HHCCCEEEEECHHH
Confidence 99999999988776
No 211
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=78.74 E-value=14 Score=30.74 Aligned_cols=78 Identities=18% Similarity=0.163 Sum_probs=46.1
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCC--CCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP--SEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (470)
.+||+++.. +-.+.+..++..+...|.++.++++.+- +..........+.....|..+.-........ ...
T Consensus 2 gl~i~~vGD-----~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l--~~a 74 (158)
T PF00185_consen 2 GLKIAYVGD-----GHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEAL--KGA 74 (158)
T ss_dssp TEEEEEESS-----TTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHH--TT-
T ss_pred CCEEEEECC-----CCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhc--CCC
Confidence 468888884 2248999999999999999998886652 2212223223333334454443334333332 357
Q ss_pred cEEEEcc
Q 012132 152 DLIVLNT 158 (470)
Q Consensus 152 DiV~~~~ 158 (470)
|+|+...
T Consensus 75 Dvvy~~~ 81 (158)
T PF00185_consen 75 DVVYTDR 81 (158)
T ss_dssp SEEEEES
T ss_pred CEEEEcC
Confidence 8887764
No 212
>PLN02206 UDP-glucuronate decarboxylase
Probab=77.98 E-value=40 Score=33.50 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=26.3
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
+.|||++.. |....-..|++.|.++||+|.++..
T Consensus 118 ~~~kILVTG------atGfIGs~Lv~~Ll~~G~~V~~ld~ 151 (442)
T PLN02206 118 KGLRVVVTG------GAGFVGSHLVDRLMARGDSVIVVDN 151 (442)
T ss_pred CCCEEEEEC------cccHHHHHHHHHHHHCcCEEEEEeC
Confidence 457887764 4456778899999999999998753
No 213
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=77.63 E-value=11 Score=26.84 Aligned_cols=52 Identities=29% Similarity=0.372 Sum_probs=36.3
Q ss_pred chhHHHHHHHHHHHhCCceEEEEecCCCCC---chhHHHhhhhhhhhcceeeEec
Q 012132 88 GGPLLLMELAFLLRGVGTKVNWITIQKPSE---EDEVIYSLEHKMWDRGVQVISA 139 (470)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 139 (470)
|+.....++|..|.+.|.+|+++...+... .......+.+.+...|++++..
T Consensus 6 GgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~ 60 (80)
T PF00070_consen 6 GGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTN 60 (80)
T ss_dssp SSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEES
T ss_pred CcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeC
Confidence 444678899999999999999998544322 2334445566677778877553
No 214
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=77.59 E-value=11 Score=36.68 Aligned_cols=86 Identities=12% Similarity=0.006 Sum_probs=58.2
Q ss_pred HHHHHhcCCCEEecCCCC---cceeeecCceeeeecC-CCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHH
Q 012132 375 TIEAMAFQLPVLGTAAGG---TTEIVVNGTTGLLHPV-GKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHM 450 (470)
Q Consensus 375 ~lEAma~G~PvI~s~~~g---~~e~v~~~~~G~l~~~-~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~ 450 (470)
+-=-|+||-.|+..+..- ..+.+.....=+-+.. +| ..+|.++|..+.++++..++++++|++++.+..+.+.+
T Consensus 230 lkylL~c~SvVl~~~~~~~e~f~~~L~P~vHYVPV~~~~d--~sdL~~~v~w~~~~~~~A~~IA~~g~~f~~~~L~~~~~ 307 (395)
T PF05686_consen 230 LKYLLACNSVVLKVKSPYYEFFYRALKPWVHYVPVKRDDD--LSDLEEKVEWLNAHDDEAQRIAENGQRFAREYLTMEDV 307 (395)
T ss_pred HHHHHcCCceEEEeCCcHHHHHHhhhcccccEEEeccccc--hhhHHHHhhhcccChHHHHHHHHHHHHHHHHHhhhhHH
Confidence 334466666666543111 1112223333233433 23 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 012132 451 AERIAVVLKEVL 462 (470)
Q Consensus 451 ~~~~~~~~~~~l 462 (470)
..-+..++.+..
T Consensus 308 ~~Y~~~LL~eYa 319 (395)
T PF05686_consen 308 YCYWRRLLLEYA 319 (395)
T ss_pred HHHHHHHHHHHH
Confidence 887777776643
No 215
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=77.08 E-value=21 Score=30.54 Aligned_cols=135 Identities=14% Similarity=0.087 Sum_probs=59.7
Q ss_pred chhHHHHHHHHHHHhC--CceEEEEecCCCCCchhHHHhhhhhhh-hcceeeEecCC---hhhHHhhcCCcEEEEcccch
Q 012132 88 GGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMW-DRGVQVISAKG---QETINTALKADLIVLNTAVA 161 (470)
Q Consensus 88 G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~DiV~~~~~~~ 161 (470)
|--..+..|++.|.++ |+.|.+-+..... ... ....+. ...+.+.+... .+.+....+||+++......
T Consensus 32 GE~~a~~~Li~~l~~~~p~~~illT~~T~tg--~~~---~~~~~~~~v~~~~~P~D~~~~~~rfl~~~~P~~~i~~EtEl 106 (186)
T PF04413_consen 32 GEVNAARPLIKRLRKQRPDLRILLTTTTPTG--REM---ARKLLPDRVDVQYLPLDFPWAVRRFLDHWRPDLLIWVETEL 106 (186)
T ss_dssp HHHHHHHHHHHHHTT---TS-EEEEES-CCH--HHH---HHGG-GGG-SEEE---SSHHHHHHHHHHH--SEEEEES---
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEecCCch--HHH---HHHhCCCCeEEEEeCccCHHHHHHHHHHhCCCEEEEEcccc
Confidence 3348899999999987 6776665543222 111 111111 12233334332 35777788999988754321
Q ss_pred -hhhHHHHhhhcCCccccceeeEEeeecc------ccchhhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEE
Q 012132 162 -GKWLDAVLKEDVPRVLPNVLWWIHEMRG------HYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYV 234 (470)
Q Consensus 162 -~~~~~~~~~~~~~~~~~~~~~~~h~~~~------~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~v 234 (470)
..++..+.+.++ +++.-.-.+.. .++.......+..++.+.+.+....+.+. .+|.+++++.|
T Consensus 107 WPnll~~a~~~~i-----p~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs~~da~r~~-----~lG~~~~~v~v 176 (186)
T PF04413_consen 107 WPNLLREAKRRGI-----PVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQSEADAERFR-----KLGAPPERVHV 176 (186)
T ss_dssp -HHHHHH-----S------EEEEEE--------------HHHHHHGGG-SEEEESSHHHHHHHH-----TTT-S--SEEE
T ss_pred CHHHHHHHhhcCC-----CEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECCHHHHHHHH-----HcCCCcceEEE
Confidence 112222223333 23222111111 11223344556777888888888877766 77989999999
Q ss_pred Eec
Q 012132 235 VHL 237 (470)
Q Consensus 235 i~n 237 (470)
..|
T Consensus 177 ~Gn 179 (186)
T PF04413_consen 177 TGN 179 (186)
T ss_dssp ---
T ss_pred eCc
Confidence 876
No 216
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=77.01 E-value=68 Score=30.41 Aligned_cols=137 Identities=12% Similarity=0.123 Sum_probs=76.9
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc------CCHH----HHHHhcCEEEEccCCcccccchHHH
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT------LTVA----PYLAAIDVLVQNSQAWGECFGRITI 376 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~------~~~~----~~~~~aDv~v~pS~~~~E~~g~~~l 376 (470)
.+.+++++|.| +.....-+...+.|. .+|.+.... +++. .+...+|+++..|....-+.|....
T Consensus 173 ~~k~vLvIGaG-----em~~l~a~~L~~~g~-~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~ 246 (338)
T PRK00676 173 KKASLLFIGYS-----EINRKVAYYLQRQGY-SRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSW 246 (338)
T ss_pred cCCEEEEEccc-----HHHHHHHHHHHHcCC-CEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeH
Confidence 56799999999 566666666666676 367776643 2222 5567899999853100344566666
Q ss_pred HHHhcCCCEEecCCCCccee--eecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHH
Q 012132 377 EAMAFQLPVLGTAAGGTTEI--VVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 454 (470)
Q Consensus 377 EAma~G~PvI~s~~~g~~e~--v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 454 (470)
|.+..-.+-+.-|..-.+++ +....+-.+++ +++|.+.+.+- .+.|++....+...+ +..+.++
T Consensus 247 ~~~~~~~~r~~iDLAvPRdId~v~~~~~v~Ly~-----iDdL~~i~~~n---~~~R~~~~~~ae~iI------~~~~~~~ 312 (338)
T PRK00676 247 ESLADIPDRIVFDFNVPRTFPWSETPFPHRYLD-----MDFISEWVQKH---LQCRKEVNNKHKLSL------REAAYKQ 312 (338)
T ss_pred HHHhhccCcEEEEecCCCCCccccccCCcEEEE-----hHHHHHHHHHH---HHHHHHHHHHHHHHH------HHHHHHH
Confidence 65543222344554443333 22223334555 55666655543 333444444444444 4567777
Q ss_pred HHHHHHHHH
Q 012132 455 AVVLKEVLK 463 (470)
Q Consensus 455 ~~~~~~~l~ 463 (470)
.+.|++-.+
T Consensus 313 ~~~~~~~~~ 321 (338)
T PRK00676 313 WESYEKKLS 321 (338)
T ss_pred HHHHHHHHh
Confidence 777877544
No 217
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=76.66 E-value=22 Score=31.15 Aligned_cols=86 Identities=14% Similarity=0.144 Sum_probs=56.5
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEec---ccCCHHHHHHhcCEEEEccCC-------cccc-cchHH
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN---KTLTVAPYLAAIDVLVQNSQA-------WGEC-FGRIT 375 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g---~~~~~~~~~~~aDv~v~pS~~-------~~E~-~g~~~ 375 (470)
.+.++.++.........+.+.+.+..+++|........- ..+++.+.+..+|+++++.=+ |.+. .--.+
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i 107 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAI 107 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHH
Confidence 456788887654333346777888888888753322222 236788899999999986431 2222 22356
Q ss_pred HHHHhcCCCEEecCCCC
Q 012132 376 IEAMAFQLPVLGTAAGG 392 (470)
Q Consensus 376 lEAma~G~PvI~s~~~g 392 (470)
.+....|+|++.+..|.
T Consensus 108 ~~~~~~G~v~~G~SAGA 124 (210)
T cd03129 108 LKRVARGVVIGGTSAGA 124 (210)
T ss_pred HHHHHcCCeEEEcCHHH
Confidence 78888899999887664
No 218
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=76.42 E-value=6.5 Score=35.18 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=28.2
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (470)
||||+...+--. ..-+.-|+++|+ .++||+|+++...+
T Consensus 1 mrILlTNDDGi~---a~Gi~aL~~al~-~~~dV~VVAP~~~q 38 (252)
T COG0496 1 MRILLTNDDGIH---APGIRALARALR-EGADVTVVAPDREQ 38 (252)
T ss_pred CeEEEecCCccC---CHHHHHHHHHHh-hCCCEEEEccCCCC
Confidence 688888775321 245788899998 88999999976554
No 219
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=76.20 E-value=22 Score=32.27 Aligned_cols=91 Identities=13% Similarity=0.022 Sum_probs=58.9
Q ss_pred cchHHHHHHhcCCCEEecCCC---CcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCh
Q 012132 371 FGRITIEAMAFQLPVLGTAAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQE 447 (470)
Q Consensus 371 ~g~~~lEAma~G~PvI~s~~~---g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~ 447 (470)
++..+-=-|+|+-.|+..... -..+.+.....=+-+..+. +-++|.++|..+.++++..+++++++++++.+..+.
T Consensus 157 ~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYvPv~~d~-sd~~l~~~i~~~~~~~~~a~~Ia~~~~~~~~~~L~~ 235 (256)
T smart00672 157 WSVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYWPIKSDL-SCRELKEAVDWGNEHDKKAQEIGKRGSEFIQQNLSM 235 (256)
T ss_pred chhhHHHHHhcCceEEEeCCchhHHHHhcccCccceEEeeCCC-chhhHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCH
Confidence 333444556666666655421 1122222222212222221 023499999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 012132 448 HHMAERIAVVLKEVL 462 (470)
Q Consensus 448 ~~~~~~~~~~~~~~l 462 (470)
+.+..-+.+++.+.-
T Consensus 236 ~~~~~Y~~~ll~eya 250 (256)
T smart00672 236 EDVYDYMFHLLQEYA 250 (256)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988888777643
No 220
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=74.14 E-value=39 Score=29.47 Aligned_cols=112 Identities=14% Similarity=0.127 Sum_probs=65.2
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCccc---ccchHHHHHHh--
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGE---CFGRITIEAMA-- 380 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E---~~g~~~lEAma-- 380 (470)
+.+++|+.+.. .....++...+..+.-..+.......+....+. ..|++++-..- .+ .-|..+++.+.
T Consensus 3 ~~~Ilivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l-~~~~~~~g~~~~~~l~~~ 77 (216)
T PRK10840 3 NMNVIIADDHP----IVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSM-PGDKYGDGITLIKYIKRH 77 (216)
T ss_pred ceEEEEECCcH----HHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCCCCEEEEeCcC-CCCCCCCHHHHHHHHHHH
Confidence 46777777652 345566666654431111222222234444443 36888875431 22 25667776664
Q ss_pred -cCCCEEec-CCCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 381 -FQLPVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 381 -~G~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
-++|+|.. +... ..+.+..|..|++..+.+ +++|.++|..+...
T Consensus 78 ~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~--~~~l~~ai~~v~~g 126 (216)
T PRK10840 78 FPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGA--PTDLPKALAALQKG 126 (216)
T ss_pred CCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCC--HHHHHHHHHHHHCC
Confidence 34666654 3222 234456688899999888 99999999988763
No 221
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=73.90 E-value=91 Score=30.34 Aligned_cols=179 Identities=12% Similarity=0.086 Sum_probs=92.9
Q ss_pred hhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCC---C---HHHHHHHHHH
Q 012132 221 TRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGK---G---QDLFLHSFYE 294 (470)
Q Consensus 221 ~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~K---g---~~~ll~a~~~ 294 (470)
..+.+++...++....-+-....+..... ..........++++.++.+|++.-...+.. | ....++.. +
T Consensus 163 f~~~f~~~~~~i~~~G~Pr~D~~~~~~~~----~~~~~~~~~~~~~~~~k~vIlyaPTfr~~~~~~~~~~~~~~~~~~-~ 237 (388)
T COG1887 163 FAEAFNIDKENILETGYPRNDKLFDEAGK----TEDILLIQLALPLPQDKKVILYAPTFRDNDVLIGTQFFNLDIDIE-K 237 (388)
T ss_pred HHHHhcccccceeecCcccchhhhhhccc----hhhhHHHhhhcCCcccCceEEecCCccCCccccchhhhhhhhhHH-H
Confidence 34467777766555444433333322211 111223456677778889999987665554 2 22222221 2
Q ss_pred HHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchH
Q 012132 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRI 374 (470)
Q Consensus 295 l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~ 374 (470)
+.+.+.+ .+..+++-=. |....-..... ...+.+..+-...++.++|..+|++|- -++.+
T Consensus 238 ~~~~l~~-----~~~~ii~k~H------p~is~~~~~~~--~~~~~~~~vs~~~di~dll~~sDiLIT-------DySSv 297 (388)
T COG1887 238 LKEKLGE-----NEYVIIVKPH------PLISDKIDKRY--ALDDFVLDVSDNADINDLLLVSDILIT-------DYSSV 297 (388)
T ss_pred HHHhhcc-----CCeEEEEecC------hhhhhhhhhhh--hccceeEecccchhHHHHHhhhCEEEe-------echHH
Confidence 2222211 3455554333 22221111111 112223333335789999999999993 24568
Q ss_pred HHHHHhcCCCEEecCCCC-----cceeee---cCceeeeecCCCCChHHHHHHHHHHHhCHH
Q 012132 375 TIEAMAFQLPVLGTAAGG-----TTEIVV---NGTTGLLHPVGKEGITPLAKNIVKLATHVE 428 (470)
Q Consensus 375 ~lEAma~G~PvI~s~~~g-----~~e~v~---~~~~G~l~~~~d~~~~~la~~i~~ll~~~~ 428 (470)
..|+|...+|||-.-... .+.... ...-|-++.. .+++.++|.....+.+
T Consensus 298 ~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~~----~~~li~ai~~~~~~~~ 355 (388)
T COG1887 298 IFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVET----QEELIDAIKPYDEDGN 355 (388)
T ss_pred HHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCcccccc----HHHHHHHHHhhhcccc
Confidence 999999999999652111 111111 1223344432 6788888888877544
No 222
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=73.54 E-value=4.2 Score=29.59 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=32.0
Q ss_pred ChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecc
Q 012132 141 GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG 189 (470)
Q Consensus 141 ~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 189 (470)
..+.+..+++.||||.|+..........+.... ...+.+++-|...+
T Consensus 41 l~R~IlirE~I~IVHgH~a~S~l~hE~i~hA~~--mGlktVfTDHSLfg 87 (90)
T PF08288_consen 41 LLRNILIRERIDIVHGHQAFSTLCHEAILHART--MGLKTVFTDHSLFG 87 (90)
T ss_pred HHHHHHHHcCeeEEEeehhhhHHHHHHHHHHHh--CCCcEEeecccccc
Confidence 456777789999999999766555444443322 33578888887644
No 223
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=72.73 E-value=6.3 Score=30.87 Aligned_cols=37 Identities=11% Similarity=0.023 Sum_probs=24.3
Q ss_pred cEEEEEeeccC---CCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELS---LSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~---~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|||+|+..... +.+ -....|+.+-.++||+|.++...
T Consensus 1 Mki~fvmDpi~~i~~~k--DTT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYK--DTTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES-GGG--TTT---HHHHHHHHHHHTT-EEEEE-GG
T ss_pred CeEEEEeCCHHHCCCCC--ChHHHHHHHHHHCCCEEEEEEcC
Confidence 79999998643 222 35667788889999999998743
No 224
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=72.36 E-value=16 Score=34.26 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=46.2
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCch----hHHHhhhhhhhhcceeeEecCCh-----hhH
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEED----EVIYSLEHKMWDRGVQVISAKGQ-----ETI 145 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 145 (470)
|||+|+.+. .+.....++|.+.||+|..+...++.... .....+.......+++++..... ...
T Consensus 1 mkIvf~Gs~-------~~a~~~L~~L~~~~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~~~~~~~~ 73 (313)
T TIGR00460 1 LRIVFFGTP-------TFSLPVLEELREDNFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQRQLEELPL 73 (313)
T ss_pred CEEEEECCC-------HHHHHHHHHHHhCCCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCCcHHHHHH
Confidence 688888653 35667778888889998654433221111 11122455556678887654433 234
Q ss_pred HhhcCCcEEEEcc
Q 012132 146 NTALKADLIVLNT 158 (470)
Q Consensus 146 ~~~~~~DiV~~~~ 158 (470)
.+..+||++++..
T Consensus 74 l~~~~~Dliv~~~ 86 (313)
T TIGR00460 74 VRELKPDVIVVVS 86 (313)
T ss_pred HHhhCCCEEEEcc
Confidence 5667999998764
No 225
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=72.26 E-value=5.6 Score=40.25 Aligned_cols=36 Identities=17% Similarity=0.013 Sum_probs=27.7
Q ss_pred EEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecC
Q 012132 76 LVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 76 kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|||.+.+.. ++. -..+..++++|+++||+|+++++.
T Consensus 22 kIl~~~P~~--~~SH~~~~~~l~~~La~rGH~VTvi~p~ 58 (507)
T PHA03392 22 RILAVFPTP--AYSHHSVFKVYVEALAERGHNVTVIKPT 58 (507)
T ss_pred cEEEEcCCC--CCcHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 477776542 233 478999999999999999999863
No 226
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=71.90 E-value=26 Score=32.56 Aligned_cols=84 Identities=12% Similarity=0.174 Sum_probs=53.9
Q ss_pred CceE-E-EEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEec-ccCCHHHH----HHhcCEEEEccCCccc--ccchHHHH
Q 012132 307 PSVH-A-VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN-KTLTVAPY----LAAIDVLVQNSQAWGE--CFGRITIE 377 (470)
Q Consensus 307 ~~~~-l-~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g-~~~~~~~~----~~~aDv~v~pS~~~~E--~~g~~~lE 377 (470)
|+++ + ++..++.+......++++..++..|+. -+...- ...|+... ....|++..|..+ .. ++...+.+
T Consensus 157 Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~-vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn-~i~s~~~~l~~~ 234 (322)
T COG2984 157 PNAKSIGVLYNPGEANSVSLVEELKKEARKAGLE-VVEAAVTSVNDIPRAVQALLGKVDVIYIPTDN-LIVSAIESLLQV 234 (322)
T ss_pred CCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCE-EEEEecCcccccHHHHHHhcCCCcEEEEecch-HHHHHHHHHHHH
Confidence 6653 3 466666544445778888888888875 222222 33555444 3566998888653 33 23455669
Q ss_pred HHhcCCCEEecCCCC
Q 012132 378 AMAFQLPVLGTAAGG 392 (470)
Q Consensus 378 Ama~G~PvI~s~~~g 392 (470)
|...++|+++++.+.
T Consensus 235 a~~~kiPli~sd~~~ 249 (322)
T COG2984 235 ANKAKIPLIASDTSS 249 (322)
T ss_pred HHHhCCCeecCCHHH
Confidence 999999999998653
No 227
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=71.72 E-value=47 Score=27.97 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=18.2
Q ss_pred CchhHHHHHHHHHHH--hCCceEEEEecCCC
Q 012132 87 SGGPLLLMELAFLLR--GVGTKVNWITIQKP 115 (470)
Q Consensus 87 ~G~~~~~~~l~~~L~--~~G~~V~v~~~~~~ 115 (470)
||.-..+..|.+.+. ...++..+++..+.
T Consensus 8 GGHt~eml~L~~~~~~~~~~~~~~ivt~~d~ 38 (170)
T PF08660_consen 8 GGHTAEMLRLLKALDNDRYQPRTYIVTEGDK 38 (170)
T ss_pred cHHHHHHHHHHHHhhhhcCCCcEEEEEcCCc
Confidence 454567788888882 23567777775544
No 228
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=71.62 E-value=28 Score=34.48 Aligned_cols=34 Identities=24% Similarity=0.202 Sum_probs=26.9
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
+.|||++.. |....-..|++.|.++||+|.++..
T Consensus 119 ~~mkILVTG------atGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 119 KRLRIVVTG------GAGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred CCCEEEEEC------CccHHHHHHHHHHHHCCCEEEEEeC
Confidence 458888765 4456778899999999999998864
No 229
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=71.01 E-value=19 Score=33.79 Aligned_cols=77 Identities=16% Similarity=0.142 Sum_probs=45.5
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCch----hHHHhhhhhhhhcceeeEecCCh-----hhH
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEED----EVIYSLEHKMWDRGVQVISAKGQ-----ETI 145 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 145 (470)
|||+|+.+. .+.....+.|.+.||++..+...++.... .....+.......+++++..... ...
T Consensus 1 mkIvf~G~~-------~~a~~~L~~L~~~~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~~~~~~~~~~ 73 (309)
T PRK00005 1 MRIVFMGTP-------EFAVPSLKALLESGHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPEKLRDPEFLAE 73 (309)
T ss_pred CEEEEECCC-------HHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcCCCCCHHHHHH
Confidence 688888653 35667777777778987755433222111 01112345556778887653322 234
Q ss_pred HhhcCCcEEEEcc
Q 012132 146 NTALKADLIVLNT 158 (470)
Q Consensus 146 ~~~~~~DiV~~~~ 158 (470)
.+..+||++++..
T Consensus 74 l~~~~~Dliv~~~ 86 (309)
T PRK00005 74 LAALNADVIVVVA 86 (309)
T ss_pred HHhcCcCEEEEeh
Confidence 5668999998864
No 230
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=70.94 E-value=62 Score=30.84 Aligned_cols=107 Identities=9% Similarity=0.036 Sum_probs=65.3
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcCh---------HHHHHHHHHHHhcCCCC
Q 012132 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT---------KFESELRNYVMQKKIQD 339 (470)
Q Consensus 269 ~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~---------~~~~~l~~~~~~~~l~~ 339 (470)
+...++.+| -+.-.+-+.+++.++.+.+ -.++++--|.-.+... +-...|++..+++|++
T Consensus 99 ~~~l~vIAG-PCsIEs~eq~l~~A~~lk~---------~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~- 167 (352)
T PRK13396 99 NHPVVVVAG-PCSVENEEMIVETAKRVKA---------AGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLG- 167 (352)
T ss_pred CCeEEEEEe-CCcccCHHHHHHHHHHHHH---------cCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCc-
Confidence 444455566 3456678889999988755 3455555554332211 2456677777788875
Q ss_pred cEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHH-HHhcCCCEEecC
Q 012132 340 RVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIE-AMAFQLPVLGTA 389 (470)
Q Consensus 340 ~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lE-Ama~G~PvI~s~ 389 (470)
-+.=.-..+++..+...+|++=.+|+. ...|+ +++ +...|+||+.+.
T Consensus 168 ~~tev~d~~~v~~~~~~~d~lqIga~~-~~n~~--LL~~va~t~kPVllk~ 215 (352)
T PRK13396 168 IITEVMDAADLEKIAEVADVIQVGARN-MQNFS--LLKKVGAQDKPVLLKR 215 (352)
T ss_pred EEEeeCCHHHHHHHHhhCCeEEECccc-ccCHH--HHHHHHccCCeEEEeC
Confidence 222111224555555558999999973 44544 454 556899999875
No 231
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=70.56 E-value=77 Score=28.06 Aligned_cols=124 Identities=6% Similarity=0.050 Sum_probs=66.4
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccc-hHHHHHHhcCCCE
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFG-RITIEAMAFQLPV 385 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g-~~~lEAma~G~Pv 385 (470)
-..++.|+... ..++++++++. +++.+....-+ ...+..+++++..+- .+... ...-+|-+.|.+|
T Consensus 47 ~gA~VtVVap~------i~~el~~l~~~----~~i~~~~r~~~-~~dl~g~~LViaATd--D~~vN~~I~~~a~~~~~lv 113 (223)
T PRK05562 47 KGCYVYILSKK------FSKEFLDLKKY----GNLKLIKGNYD-KEFIKDKHLIVIATD--DEKLNNKIRKHCDRLYKLY 113 (223)
T ss_pred CCCEEEEEcCC------CCHHHHHHHhC----CCEEEEeCCCC-hHHhCCCcEEEECCC--CHHHHHHHHHHHHHcCCeE
Confidence 46778888764 34556555542 35666653211 234567777776665 34443 4444667889999
Q ss_pred EecCCCCcce-----eeecCceeeeecCCCCC---hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 012132 386 LGTAAGGTTE-----IVVNGTTGLLHPVGKEG---ITPLAKNIVKLATHVERRLTMGKRGYERVKE 443 (470)
Q Consensus 386 I~s~~~g~~e-----~v~~~~~G~l~~~~d~~---~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~ 443 (470)
.+.+.+...+ ++..+.--+-+..+-.+ ...+.+.|++++.+-+...+.....|+.+++
T Consensus 114 n~vd~p~~~dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~~ie~~l~~~~~l~~~l~~~R~~vk~ 179 (223)
T PRK05562 114 IDCSDYKKGLCIIPYQRSTKNFVFALNTKGGSPKTSVFIGEKVKNFLKKYDDFIEYVTKIRNKAKK 179 (223)
T ss_pred EEcCCcccCeEEeeeEEecCCEEEEEECCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9887655433 44444322222221111 2455666666664434444444455665554
No 232
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=70.51 E-value=83 Score=28.86 Aligned_cols=142 Identities=16% Similarity=0.103 Sum_probs=68.5
Q ss_pred eEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCc-eEEEEEeCCCCcChHHHHHHHHHHHhcCCCC-cEEEecccC
Q 012132 271 LLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS-VHAVIIGSDMNAQTKFESELRNYVMQKKIQD-RVHFVNKTL 348 (470)
Q Consensus 271 ~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~-~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~-~V~~~g~~~ 348 (470)
..+++++.-.+.|+++.++++++ .+|. +.+-..|.|. ...-....+.+..|+.- .|-|-|..+
T Consensus 79 ~~vl~v~~dsp~~t~~eli~~ak-----------~~p~~~~~g~~g~g~----~~hl~~~~l~~~~G~~~~~Vpy~G~~~ 143 (274)
T PF03401_consen 79 PNVLVVRADSPYKTLEELIEYAK-----------ANPGKLTFGSSGPGS----SDHLAAALLAKAAGIKFTHVPYDGGAE 143 (274)
T ss_dssp EEEEEEETTSS-SSHHHHHHHHH-----------CSCCC-EEEESSTTS----HHHHHHHHHHHHHT---EEEE-SSHHH
T ss_pred ceEEEEeCCCccccHHHHHHHHH-----------hCCCCeEEEecCCCc----hHHHHHHHHHHHhCCceEEEEeCCccH
Confidence 34566777788999999999886 3343 3333333332 22333445566677641 233333334
Q ss_pred CHHHHH-HhcCEEEEccCCcccccchHHHHHHhcCC--CEEec---------CCC-----CcceeeecCceeeeecCCCC
Q 012132 349 TVAPYL-AAIDVLVQNSQAWGECFGRITIEAMAFQL--PVLGT---------AAG-----GTTEIVVNGTTGLLHPVGKE 411 (470)
Q Consensus 349 ~~~~~~-~~aDv~v~pS~~~~E~~g~~~lEAma~G~--PvI~s---------~~~-----g~~e~v~~~~~G~l~~~~d~ 411 (470)
.+..++ ...|+.+...- ........|. |+.++ +++ |.+++......|++++.+-
T Consensus 144 ~~~allgG~vd~~~~~~~--------~~~~~~~~G~~k~Lav~~~~r~~~~pdvPT~~E~G~~d~~~~~~~g~~~p~gt- 214 (274)
T PF03401_consen 144 ALTALLGGHVDAAFGSPG--------EALPYVEAGDLKPLAVFSDERSPALPDVPTFKEQGYPDIVFGSWRGLFAPKGT- 214 (274)
T ss_dssp HHHHHHTTSSSEEEEEHH--------HHHHHHHTTSEEEEEECSSS-BTTCTTS-BTTTTT-TTG--EEEEEEEEETTS-
T ss_pred HHHHHhCCeeeEEeecHH--------HHHHHHhCCCceEEEEecCccccccCCCCCHHHhCccceeeeeeeeeecCCCC-
Confidence 455555 33566553321 1233334442 11111 111 2223333345678888765
Q ss_pred ChH----HHHHHHHHHHhCHHHHHHHHHHH
Q 012132 412 GIT----PLAKNIVKLATHVERRLTMGKRG 437 (470)
Q Consensus 412 ~~~----~la~~i~~ll~~~~~~~~~~~~a 437 (470)
++ .|.+++.+.++|++..+.+.+.+
T Consensus 215 -p~~~~~~l~~a~~~~~~~pe~~~~~~~~g 243 (274)
T PF03401_consen 215 -PDEIVDKLADAIKKALEDPEFQEFLEKMG 243 (274)
T ss_dssp --HHHHHHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHHhCCHHHHHHHHHCC
Confidence 44 45666667777888776665544
No 233
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=69.99 E-value=42 Score=31.80 Aligned_cols=112 Identities=12% Similarity=0.226 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCC--CCcEEEecccCCHHHHHHh-cCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCc
Q 012132 325 ESELRNYVMQKKI--QDRVHFVNKTLTVAPYLAA-IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGT 401 (470)
Q Consensus 325 ~~~l~~~~~~~~l--~~~V~~~g~~~~~~~~~~~-aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~ 401 (470)
...+..++..+.+ .....|.|. -+++.+++. .|++|.-- |.-+.-....||+.-|=|.|-. +..+. +
T Consensus 237 ~~~F~~f~~~ldlvr~gkasfegR-~~~p~fla~~tD~VvSHq--WeN~lNYlY~daLyggYPLVHN-----S~~l~--d 306 (364)
T PF10933_consen 237 HPTFVNFANSLDLVRDGKASFEGR-FDFPDFLAQHTDAVVSHQ--WENPLNYLYYDALYGGYPLVHN-----SPLLK--D 306 (364)
T ss_pred CHHHHHHHHhhHHhhcCeeEEeee-cChHHHHHhCCCEEEecc--ccchhhHHHHHHHhcCCCcccC-----cchhc--c
Confidence 4455666666555 346777776 466777654 68877433 4556777888999999999965 33453 3
Q ss_pred eeeeecCCCCChHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHcChhH
Q 012132 402 TGLLHPVGKEGITPLAKNIVKLATH-VERRLTMGKRGYERVKEIFQEHH 449 (470)
Q Consensus 402 ~G~l~~~~d~~~~~la~~i~~ll~~-~~~~~~~~~~a~~~~~~~fs~~~ 449 (470)
.|+.++..| ..+=++++.+.+.. ....+...+++++.+.. ++..+
T Consensus 307 ~GYYY~~fD--~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~-~~p~n 352 (364)
T PF10933_consen 307 VGYYYPDFD--AFEGARQLLRAIREHDADLDAYRARARRLLDR-LSPEN 352 (364)
T ss_pred cCcCCCCcc--HHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-hCCCC
Confidence 899999888 99999999888873 44567777888877644 66544
No 234
>PRK06849 hypothetical protein; Provisional
Probab=69.83 E-value=17 Score=35.35 Aligned_cols=36 Identities=28% Similarity=0.266 Sum_probs=28.6
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
++|+||++.. .......+++.|.+.||+|.++....
T Consensus 3 ~~~~VLI~G~------~~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGA------RAPAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCC------CcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4688998853 33468999999999999999987553
No 235
>PRK00211 sulfur relay protein TusC; Validated
Probab=69.48 E-value=11 Score=29.57 Aligned_cols=41 Identities=7% Similarity=0.002 Sum_probs=32.4
Q ss_pred ccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecCC
Q 012132 74 SKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
||||+|+.+..|.|.. .+-..+++-++...+++|.++-...
T Consensus 1 M~ki~~i~~~~Pyg~~~~~eaLd~ala~~a~~~~v~vff~~D 42 (119)
T PRK00211 1 MKRIAFVFRQAPHGTASGREGLDALLATSAFTEDIGVFFIDD 42 (119)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcccCCeeEEEEhh
Confidence 4689999998887664 5777888888888888998887543
No 236
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=68.21 E-value=17 Score=38.29 Aligned_cols=77 Identities=13% Similarity=0.019 Sum_probs=45.0
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEE-EEecCCCCCchhHHHhhhhhhhhcceeeEecCCh-----hhHHhh
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN-WITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-----ETINTA 148 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 148 (470)
|||.|+.+ ..+.....+.|.+.||+|. |+|....+........+.....+.|++++..... ....+.
T Consensus 1 mkivf~g~-------~~~a~~~l~~L~~~~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~~~~~~~~~~~l~~ 73 (660)
T PRK08125 1 MKAVVFAY-------HDIGCVGIEALLAAGYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPEDVNHPLWVERIRE 73 (660)
T ss_pred CeEEEECC-------CHHHHHHHHHHHHCCCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeCCCCcHHHHHHHHh
Confidence 57888763 2355566677778899988 5653322111111113455666778888654332 233456
Q ss_pred cCCcEEEEcc
Q 012132 149 LKADLIVLNT 158 (470)
Q Consensus 149 ~~~DiV~~~~ 158 (470)
.+||++++..
T Consensus 74 ~~~D~iv~~~ 83 (660)
T PRK08125 74 LAPDVIFSFY 83 (660)
T ss_pred cCCCEEEEcc
Confidence 7899887653
No 237
>PRK13054 lipid kinase; Reviewed
Probab=67.96 E-value=17 Score=33.90 Aligned_cols=42 Identities=26% Similarity=0.165 Sum_probs=30.9
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCC
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (470)
|+|||+++|.+ +.+|+.+....+.+.|.+.|+++.+.....+
T Consensus 1 ~~~~~~~~i~N--~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~ 42 (300)
T PRK13054 1 MTFPKSLLILN--GKSAGNEELREAVGLLREEGHTLHVRVTWEK 42 (300)
T ss_pred CCCceEEEEEC--CCccchHHHHHHHHHHHHcCCEEEEEEecCC
Confidence 56788888777 3344567778888899999999887665443
No 238
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=67.87 E-value=16 Score=29.54 Aligned_cols=82 Identities=12% Similarity=-0.002 Sum_probs=41.7
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCC-CCchhHHHhhhhhhhhcceeeEecCChhhHH--hhc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP-SEEDEVIYSLEHKMWDRGVQVISAKGQETIN--TAL 149 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 149 (470)
++||||||+..-. .-+..+..+++.+... ++.+.+.... .............+.+.|+.+-.. ..+.+. ...
T Consensus 1 ~~~kVLFVC~gN~--cRSpmAE~l~~~~~~~--~~~v~SAGt~~~~g~~~~~~a~~vl~e~Gid~~~~-~~k~i~~~~~~ 75 (139)
T COG0394 1 MMMKVLFVCTGNI--CRSPMAEALLRHLAPD--NVEVDSAGTGGHPGEPPDPRAVEVLAEHGIDISGH-RSKQLTEEDFD 75 (139)
T ss_pred CCceEEEEcCCCc--ccCHHHHHHHHHhccC--CeEEECCccCCCCCCCCCHHHHHHHHHcCCCcCCc-cCccCchhhhh
Confidence 4689999996421 1134556666666553 4444442210 111111122345566777776531 112221 224
Q ss_pred CCcEEEEccc
Q 012132 150 KADLIVLNTA 159 (470)
Q Consensus 150 ~~DiV~~~~~ 159 (470)
.+|+|++-+.
T Consensus 76 ~~DlIitmd~ 85 (139)
T COG0394 76 EFDLIITMDE 85 (139)
T ss_pred hCCEEEEeCh
Confidence 7999998773
No 239
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=67.14 E-value=51 Score=26.09 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCCCCcEEEeccc------------------------------CC--HHHHHHhcCEEEEccCCcccc
Q 012132 323 KFESELRNYVMQKKIQDRVHFVNKT------------------------------LT--VAPYLAAIDVLVQNSQAWGEC 370 (470)
Q Consensus 323 ~~~~~l~~~~~~~~l~~~V~~~g~~------------------------------~~--~~~~~~~aDv~v~pS~~~~E~ 370 (470)
.+++++++-+++.+|+ |.|.+++ +. ...++..||++|.-- .|-
T Consensus 12 dWRe~I~~ga~~~~L~--v~F~~pvtdH~aSD~~G~~iLG~e~~~fw~D~k~a~iNaiRT~~li~~aDvvVvrF---Gek 86 (144)
T TIGR03646 12 DWREEIKEGAKSKNLP--IVFSGPVTDHEASDNIGEDILGKQPSNFWRDDAAASINNIRTRKLIEKADVVIALF---GEK 86 (144)
T ss_pred hHHHHHHHHHHHcCCC--eEEecCCCCCcchhhhhHHHhCCCCccccccccccchhhHHHHHHHhhCCEEEEEe---chH
Confidence 5777777777777764 5554421 11 234688899988543 222
Q ss_pred cc--hH---HHHHHhcCCCEEecCCCC
Q 012132 371 FG--RI---TIEAMAFQLPVLGTAAGG 392 (470)
Q Consensus 371 ~g--~~---~lEAma~G~PvI~s~~~g 392 (470)
+- ++ .--|.|.|+|.|.-.-..
T Consensus 87 YKQWNaAfDAg~aaAlgKplI~lh~~~ 113 (144)
T TIGR03646 87 YKQWNAAFDAGYAAALGKPLIILRPEE 113 (144)
T ss_pred HHHHHHHhhHHHHHHcCCCeEEecchh
Confidence 21 22 335788999999865443
No 240
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=67.08 E-value=31 Score=29.64 Aligned_cols=73 Identities=16% Similarity=0.109 Sum_probs=44.3
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCc--eEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC--C---------
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGT--KVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--G--------- 141 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------- 141 (470)
|||+++.+ |.+..+..+.+.+.+.+. +|.++.+..+.. .......+.|++++... .
T Consensus 1 ~riail~s-----g~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~------~~~~~A~~~gip~~~~~~~~~~~~~~~~~ 69 (190)
T TIGR00639 1 KRIVVLIS-----GNGSNLQAIIDACKEGKIPASVVLVISNKPDA------YGLERAAQAGIPTFVLSLKDFPSREAFDQ 69 (190)
T ss_pred CeEEEEEc-----CCChhHHHHHHHHHcCCCCceEEEEEECCccc------hHHHHHHHcCCCEEEECccccCchhhhhH
Confidence 57888875 445678888888887765 565544433221 12344566777775421 1
Q ss_pred -hhhHHhhcCCcEEEEcc
Q 012132 142 -QETINTALKADLIVLNT 158 (470)
Q Consensus 142 -~~~~~~~~~~DiV~~~~ 158 (470)
.....+..++|++++..
T Consensus 70 ~~~~~l~~~~~D~iv~~~ 87 (190)
T TIGR00639 70 AIIEELRAHEVDLVVLAG 87 (190)
T ss_pred HHHHHHHhcCCCEEEEeC
Confidence 12334567999998864
No 241
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=67.04 E-value=24 Score=27.30 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=29.5
Q ss_pred cEEEEEeeccCCCch-hHHHHHHHHHHHhCC---ceEEEEecCC
Q 012132 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVG---TKVNWITIQK 114 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G---~~V~v~~~~~ 114 (470)
|+|+++.+..+.+.. ......++......| ++|.|+....
T Consensus 1 k~v~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~ 44 (122)
T PF02635_consen 1 KKVFFIVTSGPYDDERAKIALRLANAAAAMGDYGHDVVVFFHGD 44 (122)
T ss_dssp EEEEEEE-S-TTTBSHHHHHHHHHHHHHHTTHTTSEEEEEE-GG
T ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHHcCCCCCcEEEEEEch
Confidence 678888876665554 678888899999999 9999988443
No 242
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=66.88 E-value=17 Score=32.06 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=33.5
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccC
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 365 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~ 365 (470)
..-.+++|+...-..+...++-+.+++..++ -|.|.|..+.+ -..+|.+++||.
T Consensus 27 gtdai~vGGS~~vt~~~~~~~v~~ik~~~lP-vilfp~~~~~i---~~~aDa~l~~sv 80 (223)
T TIGR01768 27 GTDAILIGGSQGVTYEKTDTLIEALRRYGLP-IILFPSNPTNV---SRDADALFFPSV 80 (223)
T ss_pred CCCEEEEcCCCcccHHHHHHHHHHHhccCCC-EEEeCCCcccc---CcCCCEEEEEEe
Confidence 3455677765322223455566666777765 56677765443 355999999985
No 243
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=66.34 E-value=47 Score=29.74 Aligned_cols=42 Identities=14% Similarity=0.061 Sum_probs=25.3
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
++..++||+|....- --+..+--.+..+.++|++|.++|...
T Consensus 7 ~~~~~~vL~v~aHPD--De~~g~ggtla~~~~~G~~V~v~~lT~ 48 (237)
T COG2120 7 MLDPLRVLVVFAHPD--DEEIGCGGTLAKLAARGVEVTVVCLTL 48 (237)
T ss_pred cccCCcEEEEecCCc--chhhccHHHHHHHHHCCCeEEEEEccC
Confidence 455678999986421 111112223444588999999999443
No 244
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=65.98 E-value=12 Score=31.74 Aligned_cols=34 Identities=9% Similarity=-0.098 Sum_probs=27.0
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
|||.++.-.. +.-..++++..++||+|+-++...
T Consensus 1 mKIaiIgAsG------~~Gs~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIGASG------KAGSRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred CeEEEEecCc------hhHHHHHHHHHhCCCeeEEEEeCh
Confidence 7898887533 566778899999999999998554
No 245
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=65.36 E-value=12 Score=31.78 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=29.4
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
+|+||+|.++- .++++|++.|.+.|++|.|+-..
T Consensus 1 ~~~IL~IDNyD------SFtyNLv~yl~~lg~~v~V~rnd 34 (191)
T COG0512 1 MMMILLIDNYD------SFTYNLVQYLRELGAEVTVVRND 34 (191)
T ss_pred CceEEEEECcc------chHHHHHHHHHHcCCceEEEECC
Confidence 47899998876 58999999999999999998755
No 246
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=65.21 E-value=95 Score=30.20 Aligned_cols=113 Identities=12% Similarity=0.125 Sum_probs=68.5
Q ss_pred HHHHHHHcC-C-----CCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHH
Q 012132 257 REHVRESLG-V-----RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRN 330 (470)
Q Consensus 257 ~~~~r~~~~-~-----~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~ 330 (470)
+..+.+++| . ++.+.+.+...++....-..-+++++.+ ++|++.+++.-.-+. -.+..+
T Consensus 31 ~~r~~eRfg~~~~~~~~~~p~vWiHaaSVGEv~a~~pLv~~l~~----------~~P~~~ilvTt~T~T----g~e~a~- 95 (419)
T COG1519 31 RKRLGERFGFYKPPVKPEGPLVWIHAASVGEVLAALPLVRALRE----------RFPDLRILVTTMTPT----GAERAA- 95 (419)
T ss_pred HHHHHHHhcccCCCCCCCCCeEEEEecchhHHHHHHHHHHHHHH----------hCCCCCEEEEecCcc----HHHHHH-
Confidence 445556666 2 1335677777777765555555555543 568998887664311 122222
Q ss_pred HHHhcCCCCcEEEeccc--CCHHHHHH--hcCEEEEccCCcccccchHHHHHHhcCCCEEecC
Q 012132 331 YVMQKKIQDRVHFVNKT--LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389 (470)
Q Consensus 331 ~~~~~~l~~~V~~~g~~--~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~ 389 (470)
+.++-.-.+.+++.. .-+..+++ .-|++|+-= .|-+|+.+.|+-..|+|.+.-+
T Consensus 96 --~~~~~~v~h~YlP~D~~~~v~rFl~~~~P~l~Ii~E---tElWPnli~e~~~~~~p~~LvN 153 (419)
T COG1519 96 --ALFGDSVIHQYLPLDLPIAVRRFLRKWRPKLLIIME---TELWPNLINELKRRGIPLVLVN 153 (419)
T ss_pred --HHcCCCeEEEecCcCchHHHHHHHHhcCCCEEEEEe---ccccHHHHHHHHHcCCCEEEEe
Confidence 233322345666653 33455553 347776654 6999999999999999998653
No 247
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=64.70 E-value=69 Score=27.01 Aligned_cols=66 Identities=12% Similarity=0.156 Sum_probs=45.8
Q ss_pred cCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCc----ceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 357 IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT----TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 357 aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~----~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
.|++++-... .+.-|..+++.+....|+|....... .+.+..|..|++..|.+ .+++.++|..++.
T Consensus 48 ~dlvi~d~~~-~~~~g~~~~~~l~~~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~--~~~l~~~i~~~~~ 117 (196)
T PRK10360 48 VQVCICDISM-PDISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCS--PDELIAAVHTVAT 117 (196)
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHccCCCEEEEECCCCHHHHHHHHHcCCcEEEECCCC--HHHHHHHHHHHHc
Confidence 5888775431 34456777777777788876532222 23344577889999988 9999999998875
No 248
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=64.26 E-value=27 Score=32.49 Aligned_cols=78 Identities=14% Similarity=0.113 Sum_probs=45.8
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchh----HHHhhhhhhhhcceeeEecCC-----hhh
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE----VIYSLEHKMWDRGVQVISAKG-----QET 144 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-----~~~ 144 (470)
+|||+|+.+. .+...-.++|.+.||+|.-+..+++..... ..........+.|++++.-.. ...
T Consensus 1 ~mkivF~GTp-------~fa~~~L~~L~~~~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP~~l~~~e~~~ 73 (307)
T COG0223 1 MMRIVFFGTP-------EFAVPSLEALIEAGHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQPEKLNDPEFLE 73 (307)
T ss_pred CcEEEEEcCc-------hhhHHHHHHHHhCCCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceeccccCCcHHHHH
Confidence 4789988754 245555677777889987666444433221 111233444566776654332 234
Q ss_pred HHhhcCCcEEEEcc
Q 012132 145 INTALKADLIVLNT 158 (470)
Q Consensus 145 ~~~~~~~DiV~~~~ 158 (470)
..+..+||++++..
T Consensus 74 ~l~~l~~D~ivvva 87 (307)
T COG0223 74 ELAALDPDLIVVVA 87 (307)
T ss_pred HHhccCCCEEEEEe
Confidence 44567899998754
No 249
>PRK06756 flavodoxin; Provisional
Probab=63.83 E-value=16 Score=29.85 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=28.4
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
|||+++-.+ ..|..+..+..+++.|.+.|++|.++..
T Consensus 2 mkv~IiY~S-~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 2 SKLVMIFAS-MSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred ceEEEEEEC-CCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 688888743 2344488999999999999999987753
No 250
>PRK13530 arsenate reductase; Provisional
Probab=63.72 E-value=27 Score=28.01 Aligned_cols=80 Identities=18% Similarity=0.132 Sum_probs=39.3
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhH--Hhhc
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETI--NTAL 149 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 149 (470)
|+++|||||+..-. .-+.....+++.+. |..+.+.+..-.. ..........+.+.|+.+.... .+.+ ....
T Consensus 1 ~~~~~vLFvC~~N~--cRS~mAEal~~~~~--~~~~~v~SAG~~~--~~~~~~a~~~l~e~Gi~~~~~~-s~~l~~~~~~ 73 (133)
T PRK13530 1 MNKKTIYFLCTGNS--CRSQMAEGWGKQYL--GDKWNVYSAGIEA--HGVNPNAIKAMKEVGIDISNQT-SDIIDNDILN 73 (133)
T ss_pred CCCCEEEEEcCCch--hHHHHHHHHHHHhc--CCCEEEECCCCCC--CCCCHHHHHHHHHcCCCcCCCc-cccCChhHhc
Confidence 45789999996431 11123333333332 3456665533211 1122234456667788763222 1112 1234
Q ss_pred CCcEEEEcc
Q 012132 150 KADLIVLNT 158 (470)
Q Consensus 150 ~~DiV~~~~ 158 (470)
.+|+|++-+
T Consensus 74 ~~D~ii~m~ 82 (133)
T PRK13530 74 NADLVVTLC 82 (133)
T ss_pred cCCEEEEec
Confidence 789998775
No 251
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=63.37 E-value=66 Score=31.28 Aligned_cols=84 Identities=14% Similarity=0.043 Sum_probs=49.2
Q ss_pred cccEEEEEeecc-CCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCC
Q 012132 73 KSKLVLLVSHEL-SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (470)
Q Consensus 73 ~~~kIl~v~~~~-~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (470)
..+||+++.... ..|.+.++...++..+...|.+|.++++..-...........+.....|..+......... ....
T Consensus 186 ~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~ea--v~~a 263 (395)
T PRK07200 186 KGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEA--FKDA 263 (395)
T ss_pred CCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHH--hCCC
Confidence 345899887432 2344468889999999999999999997643222222222222233445444333333222 2467
Q ss_pred cEEEEcc
Q 012132 152 DLIVLNT 158 (470)
Q Consensus 152 DiV~~~~ 158 (470)
|+|+.-.
T Consensus 264 DvVYtd~ 270 (395)
T PRK07200 264 DIVYPKS 270 (395)
T ss_pred CEEEEcC
Confidence 8888863
No 252
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=62.85 E-value=92 Score=26.16 Aligned_cols=53 Identities=9% Similarity=0.237 Sum_probs=39.3
Q ss_pred CCceEEEEEeCCCCcChHH-HHHHHHHHHhcCCCCcEEEeccc-CCHHHHHHhcCEEEEccC
Q 012132 306 VPSVHAVIIGSDMNAQTKF-ESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNSQ 365 (470)
Q Consensus 306 ~~~~~l~ivG~g~~~~~~~-~~~l~~~~~~~~l~~~V~~~g~~-~~~~~~~~~aDv~v~pS~ 365 (470)
..+.+++|+|.| +. ...+-+...+.|. +|.+.... +++.+.++.+|++|..+-
T Consensus 42 l~gk~vlViG~G-----~~~G~~~a~~L~~~g~--~V~v~~r~~~~l~~~l~~aDiVIsat~ 96 (168)
T cd01080 42 LAGKKVVVVGRS-----NIVGKPLAALLLNRNA--TVTVCHSKTKNLKEHTKQADIVIVAVG 96 (168)
T ss_pred CCCCEEEEECCc-----HHHHHHHHHHHhhCCC--EEEEEECCchhHHHHHhhCCEEEEcCC
Confidence 367899999998 43 4435555555554 57777765 789999999999998776
No 253
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=62.43 E-value=41 Score=31.08 Aligned_cols=79 Identities=22% Similarity=0.225 Sum_probs=46.7
Q ss_pred CCCch-hHHHHHHHHHHHhCCceEEEEecCCCCCchhH-----HHhhhhhhhhcceeeEecCC-------------hhhH
Q 012132 85 SLSGG-PLLLMELAFLLRGVGTKVNWITIQKPSEEDEV-----IYSLEHKMWDRGVQVISAKG-------------QETI 145 (470)
Q Consensus 85 ~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-------------~~~~ 145 (470)
.||-| +..+..|.+.|.++||.|-|++.++..+.... .-.+.......++-+-+... .-.+
T Consensus 59 ~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~at~~~i~~ 138 (323)
T COG1703 59 VPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRATREAIKL 138 (323)
T ss_pred CCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhHHHHHHHHH
Confidence 34434 78999999999999999999996554432110 00111121123333322211 1244
Q ss_pred HhhcCCcEEEEcccchhh
Q 012132 146 NTALKADLIVLNTAVAGK 163 (470)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~ 163 (470)
.....+|+|++.+.-.+.
T Consensus 139 ldAaG~DvIIVETVGvGQ 156 (323)
T COG1703 139 LDAAGYDVIIVETVGVGQ 156 (323)
T ss_pred HHhcCCCEEEEEecCCCc
Confidence 566899999999876554
No 254
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=62.26 E-value=1.2e+02 Score=27.37 Aligned_cols=86 Identities=12% Similarity=0.038 Sum_probs=54.8
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc-------cCCHHHHHHhcCEEEEccCC------cccccc-
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-------TLTVAPYLAAIDVLVQNSQA------WGECFG- 372 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~-------~~~~~~~~~~aDv~v~pS~~------~~E~~g- 372 (470)
++.+++++.........+.+.+.+..+++|.. .|..+.- .++..+.+..||++++..-+ ....-+
T Consensus 27 ~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~-~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~~l~~t~l 105 (250)
T TIGR02069 27 EDAIIVIITSASEEPREVGERYITIFSRLGVK-EVKILDVREREDASDENAIALLSNATGIFFTGGDQLRITSLLGDTPL 105 (250)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHcCCc-eeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHHHHHcCCcH
Confidence 55688888754332224566777777888874 3444332 13567889999998876421 012223
Q ss_pred -hHHHHHHhcCCCEEecCCCCc
Q 012132 373 -RITIEAMAFQLPVLGTAAGGT 393 (470)
Q Consensus 373 -~~~lEAma~G~PvI~s~~~g~ 393 (470)
-.+-++...|+|++.+..|.+
T Consensus 106 ~~~l~~~~~~G~vi~G~SAGA~ 127 (250)
T TIGR02069 106 LDRLRKRVHEGIILGGTSAGAA 127 (250)
T ss_pred HHHHHHHHHcCCeEEEccHHHH
Confidence 345588889999999887763
No 255
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=62.17 E-value=1.2e+02 Score=27.33 Aligned_cols=98 Identities=8% Similarity=-0.027 Sum_probs=63.7
Q ss_pred ccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcCh---------HHHHHHHHHHHhcCCCCcEEEecccCCH
Q 012132 280 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT---------KFESELRNYVMQKKIQDRVHFVNKTLTV 350 (470)
Q Consensus 280 ~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~---------~~~~~l~~~~~~~~l~~~V~~~g~~~~~ 350 (470)
..-..-+.+++.++.+.+ -.+.++.-|.-.+.-. +....|++..+++|++ -+.=.-...++
T Consensus 23 C~vEs~e~~~~~a~~~~~---------~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~-~~Tev~d~~~v 92 (250)
T PRK13397 23 CSIESYDHIRLAASSAKK---------LGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLL-SVSEIMSERQL 92 (250)
T ss_pred CccCCHHHHHHHHHHHHH---------cCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCC-EEEeeCCHHHH
Confidence 334566778888877644 4567777775433211 2467788888889885 22222223555
Q ss_pred HHHHHhcCEEEEccCCcccccchHHHHHH-hcCCCEEecCC
Q 012132 351 APYLAAIDVLVQNSQAWGECFGRITIEAM-AFQLPVLGTAA 390 (470)
Q Consensus 351 ~~~~~~aDv~v~pS~~~~E~~g~~~lEAm-a~G~PvI~s~~ 390 (470)
..+...+|++=.||. +..-..+++++ ..|+||+.+.-
T Consensus 93 ~~~~e~vdilqIgs~---~~~n~~LL~~va~tgkPVilk~G 130 (250)
T PRK13397 93 EEAYDYLDVIQVGAR---NMQNFEFLKTLSHIDKPILFKRG 130 (250)
T ss_pred HHHHhcCCEEEECcc---cccCHHHHHHHHccCCeEEEeCC
Confidence 556667999999997 55556677665 57999998863
No 256
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=61.84 E-value=50 Score=29.97 Aligned_cols=68 Identities=18% Similarity=0.084 Sum_probs=39.7
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhc-ceeeEec----CChhhHHhhc
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISA----KGQETINTAL 149 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~ 149 (470)
|+|+++. |.. ....+++.|.+.||+|.+.+...... ..+... +..+..- .....+....
T Consensus 1 m~ILvlG------GT~-egr~la~~L~~~g~~v~~s~~t~~~~---------~~~~~~g~~~v~~g~l~~~~l~~~l~~~ 64 (256)
T TIGR00715 1 MTVLLMG------GTV-DSRAIAKGLIAQGIEILVTVTTSEGK---------HLYPIHQALTVHTGALDPQELREFLKRH 64 (256)
T ss_pred CeEEEEe------chH-HHHHHHHHHHhCCCeEEEEEccCCcc---------ccccccCCceEEECCCCHHHHHHHHHhc
Confidence 5677765 422 38889999999999999887543321 111122 1222211 1234566778
Q ss_pred CCcEEEEcc
Q 012132 150 KADLIVLNT 158 (470)
Q Consensus 150 ~~DiV~~~~ 158 (470)
++|+|+--+
T Consensus 65 ~i~~VIDAt 73 (256)
T TIGR00715 65 SIDILVDAT 73 (256)
T ss_pred CCCEEEEcC
Confidence 899887544
No 257
>PRK00170 azoreductase; Reviewed
Probab=61.50 E-value=17 Score=31.52 Aligned_cols=40 Identities=10% Similarity=-0.008 Sum_probs=30.5
Q ss_pred ccEEEEEeeccCCC-ch-hHHHHHHHHHHHhC--CceEEEEecC
Q 012132 74 SKLVLLVSHELSLS-GG-PLLLMELAFLLRGV--GTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~-G~-~~~~~~l~~~L~~~--G~~V~v~~~~ 113 (470)
||||+++..+.... |. ...+..+++.|.+. |++|.++-..
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~ 44 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLA 44 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 37899998776555 54 46677788889888 9999988754
No 258
>PLN02778 3,5-epimerase/4-reductase
Probab=61.37 E-value=30 Score=32.24 Aligned_cols=33 Identities=12% Similarity=-0.001 Sum_probs=24.9
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEE
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWI 110 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~ 110 (470)
.++||||+.. |....-..|++.|.++||+|++.
T Consensus 7 ~~~~kiLVtG------~tGfiG~~l~~~L~~~g~~V~~~ 39 (298)
T PLN02778 7 SATLKFLIYG------KTGWIGGLLGKLCQEQGIDFHYG 39 (298)
T ss_pred CCCCeEEEEC------CCCHHHHHHHHHHHhCCCEEEEe
Confidence 4457888765 34567778899999999999754
No 259
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=61.30 E-value=64 Score=30.68 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=46.3
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
...||+++... .+++..++..+...|.+|+++++..-.................|..+......... -...|
T Consensus 153 ~glkv~~vGD~------~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea--v~~aD 224 (338)
T PRK02255 153 EDCKVVFVGDA------TQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEA--VKDAD 224 (338)
T ss_pred CCCEEEEECCC------chHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHH--hCCCC
Confidence 45789998752 36899999999999999999987643333322222222223345444333333222 23678
Q ss_pred EEEEc
Q 012132 153 LIVLN 157 (470)
Q Consensus 153 iV~~~ 157 (470)
+|+.-
T Consensus 225 vvy~~ 229 (338)
T PRK02255 225 FVYTD 229 (338)
T ss_pred EEEEc
Confidence 88884
No 260
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=61.06 E-value=45 Score=28.35 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=21.6
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCce
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTK 106 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~ 106 (470)
|||+|+.+ |.......+..+|.+.+++
T Consensus 1 mrI~~~~S-----g~~~~~~~~l~~l~~~~~~ 27 (181)
T PF00551_consen 1 MRIVFFGS-----GSGSFLKALLEALKARGHN 27 (181)
T ss_dssp EEEEEEES-----SSSHHHHHHHHHHHTTSSE
T ss_pred CEEEEEEc-----CCCHHHHHHHHHHHhCCCC
Confidence 78999875 3346788889999999987
No 261
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=61.00 E-value=1.6e+02 Score=28.35 Aligned_cols=106 Identities=17% Similarity=0.109 Sum_probs=66.6
Q ss_pred HHHHHHHcCCC---CCCeEEEEEeecccCCC-HHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHH
Q 012132 257 REHVRESLGVR---NEDLLFAIINSVSRGKG-QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYV 332 (470)
Q Consensus 257 ~~~~r~~~~~~---~~~~~i~~vGrl~~~Kg-~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~ 332 (470)
+..+.+++|++ ++...+..++ ..+. +..++++++.. ...+.++|.++. -...+....
T Consensus 168 ~~~~~~~lg~~~~~~~~~~vslF~---Ye~~~l~~ll~~~~~~----------~~pv~llvp~g~------~~~~~~~~~ 228 (374)
T PF10093_consen 168 RAAFLRRLGLPEPEPGALRVSLFC---YENAALASLLDAWAAS----------PKPVHLLVPEGR------ALNSLAAWL 228 (374)
T ss_pred HHHHHHHcCCCCCCCCCeEEEEEe---CCchHHHHHHHHHhcC----------CCCeEEEecCCc------cHHHHHHHh
Confidence 56788889985 4455554443 4444 77888887743 135677776653 344443333
Q ss_pred H----hcC---CC--CcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEec
Q 012132 333 M----QKK---IQ--DRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 388 (470)
Q Consensus 333 ~----~~~---l~--~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s 388 (470)
. ..| .. -.++++.++ ++.-+++..||+-++= .|- +.+=|.-+|+|.|=-
T Consensus 229 ~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~NfVR----GED---SfVRAqwAgkPFvWh 288 (374)
T PF10093_consen 229 GDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDFNFVR----GED---SFVRAQWAGKPFVWH 288 (374)
T ss_pred ccccccCccccccCCeEEEECCCCCHHHHHHHHHhCccceEe----cch---HHHHHHHhCCCceEe
Confidence 2 011 01 136677764 7889999999996654 343 578899999999843
No 262
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=60.77 E-value=35 Score=30.98 Aligned_cols=42 Identities=21% Similarity=0.143 Sum_probs=32.4
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCC
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG 391 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~ 391 (470)
+++.++++.+|+++--|. .+...-.+..|+..|+|+|....|
T Consensus 52 ~dl~~ll~~~DvVid~t~--p~~~~~~~~~al~~G~~vvigttG 93 (257)
T PRK00048 52 DDLEAVLADADVLIDFTT--PEATLENLEFALEHGKPLVIGTTG 93 (257)
T ss_pred CCHHHhccCCCEEEECCC--HHHHHHHHHHHHHcCCCEEEECCC
Confidence 567777778999996666 566666677899999999977544
No 263
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=60.74 E-value=58 Score=28.30 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=30.7
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (470)
..+|++++-.-..||-.. -.|+.|...|++|+|+...++.
T Consensus 49 ~~~v~vlcG~GnNGGDG~---VaAR~L~~~G~~V~v~~~~~~~ 88 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGL---VAARHLKAAGYAVTVLLLGDPK 88 (203)
T ss_pred CCEEEEEECCCCccHHHH---HHHHHHHhCCCceEEEEeCCCC
Confidence 468999998777776443 3588999999999999955443
No 264
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=60.53 E-value=1.4e+02 Score=27.37 Aligned_cols=104 Identities=13% Similarity=0.017 Sum_probs=64.9
Q ss_pred EEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCC-------c--ChHHHHHHHHHHHhcCCCCcEEE
Q 012132 273 FAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMN-------A--QTKFESELRNYVMQKKIQDRVHF 343 (470)
Q Consensus 273 i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~-------~--~~~~~~~l~~~~~~~~l~~~V~~ 343 (470)
++++|- ..-...+.+++.++++++ -.++++..|.-.+ . .......+++..+++|++--..+
T Consensus 29 ~~iaGP-Csie~~~~~~~~A~~lk~---------~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~ 98 (266)
T PRK13398 29 IIIAGP-CAVESEEQMVKVAEKLKE---------LGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEV 98 (266)
T ss_pred EEEEeC-CcCCCHHHHHHHHHHHHH---------cCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEee
Confidence 444554 445678889999988865 3456677772211 1 12356778888889998632233
Q ss_pred ecccCCHHHHHHhcCEEEEccCCcccccchHHH-HHHhcCCCEEecCC
Q 012132 344 VNKTLTVAPYLAAIDVLVQNSQAWGECFGRITI-EAMAFQLPVLGTAA 390 (470)
Q Consensus 344 ~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~l-EAma~G~PvI~s~~ 390 (470)
... .++..+...+|++-.+|+ +..-..++ ++...|+||+.++.
T Consensus 99 ~d~-~~~~~l~~~vd~~kIga~---~~~n~~LL~~~a~~gkPV~lk~G 142 (266)
T PRK13398 99 MDT-RDVEEVADYADMLQIGSR---NMQNFELLKEVGKTKKPILLKRG 142 (266)
T ss_pred CCh-hhHHHHHHhCCEEEECcc---cccCHHHHHHHhcCCCcEEEeCC
Confidence 222 444444455899999997 33344455 45567999998863
No 265
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=59.80 E-value=63 Score=24.43 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=19.9
Q ss_pred cCCceEEEEEeCCCCcChHHHHHHHHHHHhc
Q 012132 305 EVPSVHAVIIGSDMNAQTKFESELRNYVMQK 335 (470)
Q Consensus 305 ~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~ 335 (470)
.+|+.+++++|+..+.++ +-+.+.+++.
T Consensus 61 ~fP~~kfiLIGDsgq~Dp---eiY~~ia~~~ 88 (100)
T PF09949_consen 61 DFPERKFILIGDSGQHDP---EIYAEIARRF 88 (100)
T ss_pred HCCCCcEEEEeeCCCcCH---HHHHHHHHHC
Confidence 459999999999876654 4445556655
No 266
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=59.73 E-value=18 Score=33.80 Aligned_cols=41 Identities=15% Similarity=-0.125 Sum_probs=30.7
Q ss_pred ccccEEEEEeeccCC-Cch-hHHHHHHHHHHHhCCceEEEEec
Q 012132 72 MKSKLVLLVSHELSL-SGG-PLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~-~G~-~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
||+++|++++...++ -.. -.....+.++|++.||+|.++..
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~ 44 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDP 44 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEec
Confidence 567899999855444 222 24568999999999999999853
No 267
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=59.69 E-value=59 Score=30.38 Aligned_cols=76 Identities=11% Similarity=0.061 Sum_probs=46.5
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
..+||+++... .+++..++..+...|.+|+++++..-.................|..+........ -...|
T Consensus 146 ~g~kva~vGD~------~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~a---~~~aD 216 (302)
T PRK14805 146 SKVKLAYVGDG------NNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDIEA---IEGHD 216 (302)
T ss_pred CCcEEEEEcCC------CccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCHHH---HCCCC
Confidence 45789999652 3578999999999999999999765433333322222223334555433332222 35778
Q ss_pred EEEEc
Q 012132 153 LIVLN 157 (470)
Q Consensus 153 iV~~~ 157 (470)
+|+.-
T Consensus 217 vvy~~ 221 (302)
T PRK14805 217 AIYTD 221 (302)
T ss_pred EEEee
Confidence 88874
No 268
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=59.53 E-value=16 Score=27.28 Aligned_cols=75 Identities=9% Similarity=0.073 Sum_probs=46.0
Q ss_pred EEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHH--hcCCCEEec
Q 012132 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM--AFQLPVLGT 388 (470)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAm--a~G~PvI~s 388 (470)
|+++|.|.... -....+++.+++.|++-.|.-.+. .++......+|+++.... -.+-..-++.. ..|+||..-
T Consensus 7 Ll~C~~G~sSS-~l~~k~~~~~~~~gi~~~v~a~~~-~~~~~~~~~~Dvill~pq---i~~~~~~i~~~~~~~~ipv~~I 81 (95)
T TIGR00853 7 LLLCAAGMSTS-LLVNKMNKAAEEYGVPVKIAAGSY-GAAGEKLDDADVVLLAPQ---VAYMLPDLKKETDKKGIPVEVI 81 (95)
T ss_pred EEECCCchhHH-HHHHHHHHHHHHCCCcEEEEEecH-HHHHhhcCCCCEEEECch---HHHHHHHHHHHhhhcCCCEEEe
Confidence 56667774322 256778888888888644433332 456667778899887765 12223334433 457799887
Q ss_pred CC
Q 012132 389 AA 390 (470)
Q Consensus 389 ~~ 390 (470)
+.
T Consensus 82 ~~ 83 (95)
T TIGR00853 82 NG 83 (95)
T ss_pred Ch
Confidence 53
No 269
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=59.26 E-value=21 Score=32.30 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=28.9
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCC
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (470)
++||||+...+.-. +.-+..|+++|.+.| +|.|+++....
T Consensus 4 ~~M~ILltNDDGi~---a~Gi~aL~~~l~~~g-~V~VvAP~~~~ 43 (257)
T PRK13932 4 KKPHILVCNDDGIE---GEGIHVLAASMKKIG-RVTVVAPAEPH 43 (257)
T ss_pred CCCEEEEECCCCCC---CHHHHHHHHHHHhCC-CEEEEcCCCCC
Confidence 56899987765322 234788889998888 89998876544
No 270
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=58.90 E-value=22 Score=28.27 Aligned_cols=37 Identities=11% Similarity=-0.001 Sum_probs=29.0
Q ss_pred EEEEEeeccCCCch-hHHHHHHHHHHHhCCceE-EEEec
Q 012132 76 LVLLVSHELSLSGG-PLLLMELAFLLRGVGTKV-NWITI 112 (470)
Q Consensus 76 kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V-~v~~~ 112 (470)
|++++....|.|+. .+...++++++.+.||+| .||-.
T Consensus 1 ~~~iv~~~~P~~~~~~~~al~~A~aa~~~gh~v~~vFf~ 39 (127)
T TIGR03012 1 KYTLLVTGPPYGTQAASSAYQFAQALLAKGHEIVRVFFY 39 (127)
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHCCCcEEEEEEe
Confidence 46777776776665 689999999999999995 77753
No 271
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=58.86 E-value=63 Score=30.64 Aligned_cols=78 Identities=12% Similarity=0.072 Sum_probs=46.6
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
..+||+++... ..+++..++..+...|.+|.++++..-.................|..+......... -...|
T Consensus 154 ~g~kia~vGD~-----~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea--~~~aD 226 (332)
T PRK04284 154 KDIKFTYVGDG-----RNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEG--VKGSD 226 (332)
T ss_pred CCcEEEEecCC-----CcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHH--hCCCC
Confidence 45789998642 126788999999999999999987654433333222222223345444333333322 23678
Q ss_pred EEEEc
Q 012132 153 LIVLN 157 (470)
Q Consensus 153 iV~~~ 157 (470)
+|+..
T Consensus 227 vvy~~ 231 (332)
T PRK04284 227 VIYTD 231 (332)
T ss_pred EEEEC
Confidence 88874
No 272
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=58.76 E-value=23 Score=28.20 Aligned_cols=36 Identities=19% Similarity=0.061 Sum_probs=25.3
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|||++..... ++.....++++.|.+.|++|.++...
T Consensus 1 k~i~l~vtGs---~~~~~~~~~l~~L~~~g~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTGS---IAAYKAPDLLRRLKRAGWEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-SS---GGGGGHHHHHHHHHTTTSEEEEEESH
T ss_pred CEEEEEEECH---HHHHHHHHHHHHHhhCCCEEEEEECC
Confidence 5677766422 22344899999999999999988754
No 273
>PLN00016 RNA-binding protein; Provisional
Probab=58.66 E-value=12 Score=36.33 Aligned_cols=40 Identities=30% Similarity=0.301 Sum_probs=29.5
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
++||||+++.... |....-..+++.|.+.||+|++++...
T Consensus 51 ~~~~VLVt~~~~G--atG~iG~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 51 EKKKVLIVNTNSG--GHAFIGFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred ccceEEEEeccCC--CceeEhHHHHHHHHHCCCEEEEEecCC
Confidence 4578998865542 224666778889999999999998543
No 274
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=58.40 E-value=68 Score=25.26 Aligned_cols=77 Identities=13% Similarity=0.111 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhc-CEEEE
Q 012132 284 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI-DVLVQ 362 (470)
Q Consensus 284 g~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~a-Dv~v~ 362 (470)
|....++++++ ..++|+|+...-+.. .....+..++++.+++ +.+.+..+++-...... .+.+.
T Consensus 34 G~~~v~kaikk------------gkakLVilA~D~s~~-~i~~~~~~lc~~~~Vp--~~~~~tk~eLG~a~Gk~~~~svv 98 (122)
T PRK04175 34 GTNETTKAVER------------GIAKLVVIAEDVDPE-EIVAHLPLLCEEKKIP--YVYVPSKKDLGKAAGLEVGAAAA 98 (122)
T ss_pred cHHHHHHHHHc------------CCccEEEEeCCCChH-HHHHHHHHHHHHcCCC--EEEECCHHHHHHHhCCCCCeEEE
Confidence 78888888753 568888888753210 1357899999999987 77888777787777665 34444
Q ss_pred ccCCcccccchHHHH
Q 012132 363 NSQAWGECFGRITIE 377 (470)
Q Consensus 363 pS~~~~E~~g~~~lE 377 (470)
.-. .+|+.-.+++
T Consensus 99 aI~--d~g~a~~~~~ 111 (122)
T PRK04175 99 AIV--DAGKAKELVE 111 (122)
T ss_pred EEe--chhhhHHHHH
Confidence 333 4555544443
No 275
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=58.37 E-value=29 Score=26.16 Aligned_cols=73 Identities=7% Similarity=0.048 Sum_probs=46.0
Q ss_pred EEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEec-ccCCHHHHHHhcCEEEEccCCcccccchHHH--HHHhcCCCEEe
Q 012132 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN-KTLTVAPYLAAIDVLVQNSQAWGECFGRITI--EAMAFQLPVLG 387 (470)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g-~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~l--EAma~G~PvI~ 387 (470)
++++|.|.+. +=..+.+++.+++.|++ +.+.- ...++......+|+++.... =.|-..-+ .+-..|+||..
T Consensus 4 ll~C~~GaSS-s~la~km~~~a~~~gi~--~~i~a~~~~e~~~~~~~~Dvill~PQ---v~~~~~~i~~~~~~~~ipv~~ 77 (99)
T cd05565 4 LVLCAGGGTS-GLLANALNKGAKERGVP--LEAAAGAYGSHYDMIPDYDLVILAPQ---MASYYDELKKDTDRLGIKLVT 77 (99)
T ss_pred EEECCCCCCH-HHHHHHHHHHHHHCCCc--EEEEEeeHHHHHHhccCCCEEEEcCh---HHHHHHHHHHHhhhcCCCEEE
Confidence 4555666322 23678899999999885 44433 23677888889998887654 12222222 34456789887
Q ss_pred cC
Q 012132 388 TA 389 (470)
Q Consensus 388 s~ 389 (470)
-+
T Consensus 78 I~ 79 (99)
T cd05565 78 TT 79 (99)
T ss_pred eC
Confidence 65
No 276
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=58.22 E-value=22 Score=30.87 Aligned_cols=40 Identities=20% Similarity=0.124 Sum_probs=30.0
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
.+|++.+++.-+-.|-...+.+|+..|++.|+.|.++-..
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3677777654444444688999999999999999888643
No 277
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=58.20 E-value=20 Score=33.33 Aligned_cols=39 Identities=13% Similarity=0.016 Sum_probs=29.1
Q ss_pred ccccEEEEEeeccCCCch--hHHHHHHHHHHHhCCceEEEEecC
Q 012132 72 MKSKLVLLVSHELSLSGG--PLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~--~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|.+|||.-+. ..||. ...+.+|+.+|++.|+.|.++-.+
T Consensus 1 ~~~~~~iai~---~KGGvGKTt~~~nLa~~la~~g~kVLliD~D 41 (295)
T PRK13234 1 MSKLRQIAFY---GKGGIGKSTTSQNTLAALVEMGQKILIVGCD 41 (295)
T ss_pred CCcceEEEEE---CCCCccHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 4566666553 45665 467899999999999999999533
No 278
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.11 E-value=53 Score=31.51 Aligned_cols=80 Identities=18% Similarity=0.186 Sum_probs=50.3
Q ss_pred EEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCCh----------hhHH
Q 012132 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ----------ETIN 146 (470)
Q Consensus 77 Il~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 146 (470)
|.|+. +.-+|-......||..++++|+.+.++|.+.-. ....+.+.......+++++..... -...
T Consensus 104 imfVG--LqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFR--agAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 104 IMFVG--LQGSGKTTTCTKLAYYYKKKGYKVALVCADTFR--AGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred EEEEe--ccCCCcceeHHHHHHHHHhcCCceeEEeecccc--cchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 44444 222343688999999999999999999954322 222333444455567777654211 1234
Q ss_pred hhcCCcEEEEcccc
Q 012132 147 TALKADLIVLNTAV 160 (470)
Q Consensus 147 ~~~~~DiV~~~~~~ 160 (470)
+.+++|+|++.++.
T Consensus 180 Kke~fdvIIvDTSG 193 (483)
T KOG0780|consen 180 KKENFDVIIVDTSG 193 (483)
T ss_pred HhcCCcEEEEeCCC
Confidence 56899999997743
No 279
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=57.77 E-value=80 Score=24.06 Aligned_cols=78 Identities=10% Similarity=0.180 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEc
Q 012132 284 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQN 363 (470)
Q Consensus 284 g~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~p 363 (470)
|.+.++++++. ..++|+|+....+. .....+.++++.++++ .+.+ +..+++...+....+.+..
T Consensus 21 G~~~v~~aik~------------gk~~lVI~A~D~s~--~~kkki~~~~~~~~vp-~~~~-~t~~eLg~a~Gk~~~~~ia 84 (104)
T PRK05583 21 GYNKCEEAIKK------------KKVYLIIISNDISE--NSKNKFKNYCNKYNIP-YIEG-YSKEELGNAIGRDEIKILG 84 (104)
T ss_pred cHHHHHHHHHc------------CCceEEEEeCCCCH--hHHHHHHHHHHHcCCC-EEEe-cCHHHHHHHhCCCCeEEEE
Confidence 56677777642 56788888875332 3678888888877765 2333 6667888888776665555
Q ss_pred cCCcccccchHHHHHH
Q 012132 364 SQAWGECFGRITIEAM 379 (470)
Q Consensus 364 S~~~~E~~g~~~lEAm 379 (470)
-. .++|.-.+++.+
T Consensus 85 i~--d~g~a~~l~~~~ 98 (104)
T PRK05583 85 VK--DKNMAKKLLKLW 98 (104)
T ss_pred Ee--ChHHHHHHHHHH
Confidence 55 677777776654
No 280
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=57.28 E-value=75 Score=29.72 Aligned_cols=77 Identities=16% Similarity=0.083 Sum_probs=46.7
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
...||+++... .+.+..++..|...|.+|.++++..-.........+.......|..+.......... ...|
T Consensus 147 ~g~~v~~vGd~------~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~--~~aD 218 (304)
T TIGR00658 147 KGVKVVYVGDG------NNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAV--KGAD 218 (304)
T ss_pred CCcEEEEEeCC------CchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHh--CCCC
Confidence 45789988642 368899999999999999999865543333332222222333454443333332222 3678
Q ss_pred EEEEc
Q 012132 153 LIVLN 157 (470)
Q Consensus 153 iV~~~ 157 (470)
+|+.-
T Consensus 219 vvy~~ 223 (304)
T TIGR00658 219 VIYTD 223 (304)
T ss_pred EEEEc
Confidence 88874
No 281
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=56.81 E-value=63 Score=28.09 Aligned_cols=71 Identities=18% Similarity=0.154 Sum_probs=0.0
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCC
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (470)
...++|+++ ||+......++.|.+.|++|+|+...... .+........+............. ..
T Consensus 8 l~~k~vLVI-------GgG~va~~ka~~Ll~~ga~V~VIs~~~~~-------~l~~l~~~~~i~~~~~~~~~~~l~--~a 71 (202)
T PRK06718 8 LSNKRVVIV-------GGGKVAGRRAITLLKYGAHIVVISPELTE-------NLVKLVEEGKIRWKQKEFEPSDIV--DA 71 (202)
T ss_pred cCCCEEEEE-------CCCHHHHHHHHHHHHCCCeEEEEcCCCCH-------HHHHHHhCCCEEEEecCCChhhcC--Cc
Q ss_pred cEEEEcc
Q 012132 152 DLIVLNT 158 (470)
Q Consensus 152 DiV~~~~ 158 (470)
|+|++.+
T Consensus 72 dlViaaT 78 (202)
T PRK06718 72 FLVIAAT 78 (202)
T ss_pred eEEEEcC
No 282
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=56.79 E-value=22 Score=29.22 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=26.7
Q ss_pred cEEEEEeeccCCCc-hhHHHHHHHHHHHhCCceEEEEe
Q 012132 75 KLVLLVSHELSLSG-GPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 75 ~kIl~v~~~~~~~G-~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
||+|++-. ...| ....+..+|..|.+.|++|.+.-
T Consensus 1 Mk~LIlYs--tr~GqT~kIA~~iA~~L~e~g~qvdi~d 36 (175)
T COG4635 1 MKTLILYS--TRDGQTRKIAEYIASHLRESGIQVDIQD 36 (175)
T ss_pred CceEEEEe--cCCCcHHHHHHHHHHHhhhcCCeeeeee
Confidence 57777653 2233 36889999999999999999975
No 283
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=56.62 E-value=70 Score=30.38 Aligned_cols=79 Identities=9% Similarity=-0.026 Sum_probs=48.0
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
+.++|+++... . .+++..++..+...|.+|.++++..-.................|..+.......... ...|
T Consensus 155 ~g~~ia~vGD~-~----~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~--~~aD 227 (336)
T PRK03515 155 NEMTLAYAGDA-R----NNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGV--KGAD 227 (336)
T ss_pred CCCEEEEeCCC-c----CcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHh--CCCC
Confidence 45789988752 1 147888888888899999999976544333333333333444565554333333222 4788
Q ss_pred EEEEcc
Q 012132 153 LIVLNT 158 (470)
Q Consensus 153 iV~~~~ 158 (470)
+|+...
T Consensus 228 vvytd~ 233 (336)
T PRK03515 228 FIYTDV 233 (336)
T ss_pred EEEecC
Confidence 888864
No 284
>PRK09271 flavodoxin; Provisional
Probab=56.61 E-value=25 Score=29.22 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=27.8
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
|||+++-... .|..+..+..++..|.+.|++|.+..
T Consensus 1 mkv~IvY~S~-tGnTe~~A~~ia~~l~~~g~~v~~~~ 36 (160)
T PRK09271 1 MRILLAYASL-SGNTREVAREIEERCEEAGHEVDWVE 36 (160)
T ss_pred CeEEEEEEcC-CchHHHHHHHHHHHHHhCCCeeEEEe
Confidence 5777777542 24448999999999999999998764
No 285
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=56.61 E-value=76 Score=24.41 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=47.6
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhcCCC
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (470)
+++.++-+-+. ..+..++..++++.+ ..+++.++++ ..|+++..+. ...-.-.+.+++..|++
T Consensus 24 ~~~~v~~v~d~------~~~~~~~~~~~~~~~-------~~~~~~~ll~~~~~D~V~I~tp--~~~h~~~~~~~l~~g~~ 88 (120)
T PF01408_consen 24 PDFEVVAVCDP------DPERAEAFAEKYGIP-------VYTDLEELLADEDVDAVIIATP--PSSHAEIAKKALEAGKH 88 (120)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHHTTSE-------EESSHHHHHHHTTESEEEEESS--GGGHHHHHHHHHHTTSE
T ss_pred CCcEEEEEEeC------CHHHHHHHHHHhccc-------chhHHHHHHHhhcCCEEEEecC--CcchHHHHHHHHHcCCE
Confidence 67776644332 345566667777754 1256778887 6899888887 56666678899999999
Q ss_pred EEecC
Q 012132 385 VLGTA 389 (470)
Q Consensus 385 vI~s~ 389 (470)
|++-.
T Consensus 89 v~~EK 93 (120)
T PF01408_consen 89 VLVEK 93 (120)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 88764
No 286
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=56.23 E-value=86 Score=26.04 Aligned_cols=66 Identities=5% Similarity=-0.095 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc-CCHHHHHHhcCEEE
Q 012132 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLV 361 (470)
Q Consensus 283 Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~-~~~~~~~~~aDv~v 361 (470)
=.+.+.++|+..+.. +.-|.-.++-|++ ....|-+.+++.|. .|...|.. .--..+-++||-|+
T Consensus 89 ~Dv~laIDame~~~~-------~~iD~~vLvSgD~------DF~~Lv~~lre~G~--~V~v~g~~~~ts~~L~~acd~FI 153 (160)
T TIGR00288 89 VDVRMAVEAMELIYN-------PNIDAVALVTRDA------DFLPVINKAKENGK--ETIVIGAEPGFSTALQNSADIAI 153 (160)
T ss_pred ccHHHHHHHHHHhcc-------CCCCEEEEEeccH------hHHHHHHHHHHCCC--EEEEEeCCCCChHHHHHhcCeEE
Confidence 358889999876633 2245566666666 45555566666664 68888854 34457889999888
Q ss_pred Ec
Q 012132 362 QN 363 (470)
Q Consensus 362 ~p 363 (470)
.-
T Consensus 154 ~L 155 (160)
T TIGR00288 154 IL 155 (160)
T ss_pred eC
Confidence 54
No 287
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=55.71 E-value=83 Score=29.71 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=46.9
Q ss_pred Cc-eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHhcCC
Q 012132 307 PS-VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQL 383 (470)
Q Consensus 307 ~~-~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~ 383 (470)
++ +.++-+.+. ..+..++.+++++.+ -..+++.++++. .|+++..+. ...-.-.++.|+..|+
T Consensus 27 ~~~~~~vav~d~------~~~~a~~~a~~~~~~------~~~~~~~~ll~~~~iD~V~Iatp--~~~H~e~~~~AL~aGk 92 (342)
T COG0673 27 GGGLELVAVVDR------DPERAEAFAEEFGIA------KAYTDLEELLADPDIDAVYIATP--NALHAELALAALEAGK 92 (342)
T ss_pred CCceEEEEEecC------CHHHHHHHHHHcCCC------cccCCHHHHhcCCCCCEEEEcCC--ChhhHHHHHHHHhcCC
Confidence 44 455555443 466788889988865 112677888876 588888776 3433444589999999
Q ss_pred CEEecC
Q 012132 384 PVLGTA 389 (470)
Q Consensus 384 PvI~s~ 389 (470)
+|++=.
T Consensus 93 hVl~EK 98 (342)
T COG0673 93 HVLCEK 98 (342)
T ss_pred EEEEcC
Confidence 999753
No 288
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=55.28 E-value=74 Score=27.24 Aligned_cols=24 Identities=21% Similarity=0.019 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhCCceEEEEecCC
Q 012132 91 LLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
+.-..+|+++..+|++|++++...
T Consensus 30 ~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 30 KMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred HHHHHHHHHHHHCCCEEEEEecCc
Confidence 788999999999999999999653
No 289
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=55.16 E-value=1.5e+02 Score=26.13 Aligned_cols=111 Identities=12% Similarity=0.044 Sum_probs=56.4
Q ss_pred CCHHHHHHhcCEEEEccCC-------cccccchHHHHHHhcCCCEEecCCCCccee-------eecCceeeeecCCCCCh
Q 012132 348 LTVAPYLAAIDVLVQNSQA-------WGECFGRITIEAMAFQLPVLGTAAGGTTEI-------VVNGTTGLLHPVGKEGI 413 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~-------~~E~~g~~~lEAma~G~PvI~s~~~g~~e~-------v~~~~~G~l~~~~d~~~ 413 (470)
+++...|..+|++++=-.. |.|.+-..+-.....|+++|.|......++ ...-..|+++.-...|.
T Consensus 89 ~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~ 168 (219)
T PF00308_consen 89 EEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDD 168 (219)
T ss_dssp HHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----H
T ss_pred hhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCH
Confidence 3455668899999964321 012222233356688999987643322221 11123355554333236
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Q 012132 414 TPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 462 (470)
Q Consensus 414 ~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l 462 (470)
+...+.+.+...... -.+.+...+++.+++. .-.+.+..++.++.
T Consensus 169 ~~r~~il~~~a~~~~--~~l~~~v~~~l~~~~~--~~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 169 EDRRRILQKKAKERG--IELPEEVIEYLARRFR--RDVRELEGALNRLD 213 (219)
T ss_dssp HHHHHHHHHHHHHTT----S-HHHHHHHHHHTT--SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCcHHHHHHHHHhhc--CCHHHHHHHHHHHH
Confidence 777777777665322 2366667777776553 23445555555554
No 290
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=55.11 E-value=45 Score=24.90 Aligned_cols=75 Identities=16% Similarity=0.082 Sum_probs=41.9
Q ss_pred CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCcEEEEcccchhhhHH
Q 012132 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLD 166 (470)
Q Consensus 87 ~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~ 166 (470)
||.+....++-+.+.+.|.+..+....+..... ...+. ..-.++|+|++.+...++-..
T Consensus 6 GG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~--~~~l~-------------------~~i~~aD~VIv~t~~vsH~~~ 64 (97)
T PF10087_consen 6 GGREDRERRYKRILEKYGGKLIHHGRDGGDEKK--ASRLP-------------------SKIKKADLVIVFTDYVSHNAM 64 (97)
T ss_pred cCCcccHHHHHHHHHHcCCEEEEEecCCCCccc--hhHHH-------------------HhcCCCCEEEEEeCCcChHHH
Confidence 455778888889999999998888211111100 00001 112478999888766665555
Q ss_pred HHhhhcCCccccceee
Q 012132 167 AVLKEDVPRVLPNVLW 182 (470)
Q Consensus 167 ~~~~~~~~~~~~~~~~ 182 (470)
...+...++...|+++
T Consensus 65 ~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 65 WKVKKAAKKYGIPIIY 80 (97)
T ss_pred HHHHHHHHHcCCcEEE
Confidence 5444433333345544
No 291
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=54.83 E-value=15 Score=33.97 Aligned_cols=31 Identities=23% Similarity=0.157 Sum_probs=24.1
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
||||++... ...-..+.+.|.++|++|...+
T Consensus 1 MriLI~Gas------G~lG~~l~~~l~~~~~~v~~~~ 31 (286)
T PF04321_consen 1 MRILITGAS------GFLGSALARALKERGYEVIATS 31 (286)
T ss_dssp EEEEEETTT------SHHHHHHHHHHTTTSEEEEEES
T ss_pred CEEEEECCC------CHHHHHHHHHHhhCCCEEEEeC
Confidence 788888632 3567788899999999988774
No 292
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=54.43 E-value=8.6 Score=30.75 Aligned_cols=12 Identities=42% Similarity=1.074 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHH
Q 012132 16 RWILALLIMLSI 27 (470)
Q Consensus 16 ~~~~~~~~~~~~ 27 (470)
||++++++++.+
T Consensus 1 RW~l~~iii~~i 12 (130)
T PF12273_consen 1 RWVLFAIIIVAI 12 (130)
T ss_pred CeeeHHHHHHHH
Confidence 677776644433
No 293
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=54.17 E-value=27 Score=26.12 Aligned_cols=74 Identities=14% Similarity=0.256 Sum_probs=46.7
Q ss_pred EEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHH--HHhcCCCEEec
Q 012132 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIE--AMAFQLPVLGT 388 (470)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lE--Ama~G~PvI~s 388 (470)
++++|.|.... -..+.+++.+++.|++-.|.-.+. .++......+|+++.... -.+-..-++ +.-.++||..-
T Consensus 3 l~~Cg~G~sTS-~~~~ki~~~~~~~~~~~~v~~~~~-~~~~~~~~~~Diil~~Pq---v~~~~~~i~~~~~~~~~pv~~I 77 (96)
T cd05564 3 LLVCSAGMSTS-ILVKKMKKAAEKRGIDAEIEAVPE-SELEEYIDDADVVLLGPQ---VRYMLDEVKKKAAEYGIPVAVI 77 (96)
T ss_pred EEEcCCCchHH-HHHHHHHHHHHHCCCceEEEEecH-HHHHHhcCCCCEEEEChh---HHHHHHHHHHHhccCCCcEEEc
Confidence 56777775433 256788888898888644444332 456667788998887665 122233333 34578888876
Q ss_pred C
Q 012132 389 A 389 (470)
Q Consensus 389 ~ 389 (470)
+
T Consensus 78 ~ 78 (96)
T cd05564 78 D 78 (96)
T ss_pred C
Confidence 5
No 294
>PF14118 YfzA: YfzA-like protein
Probab=53.96 E-value=26 Score=25.74 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=22.8
Q ss_pred CCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 012132 1 MGKHSATGWWVPLTKRWILALLIMLSISTAIAFFIRA 37 (470)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (470)
|++.+-|-| +++|.+++++|+.+=+++..+-.+
T Consensus 1 ~~~~~~P~~----kk~W~~~L~iF~i~QLlFi~~d~t 33 (94)
T PF14118_consen 1 MTNKKQPIR----KKRWFITLGIFLIVQLLFIIFDGT 33 (94)
T ss_pred CCcccCchh----hhhHHHHHHHHHHHHHHHHHhhcc
Confidence 666655554 788999999888776666555543
No 295
>PRK10494 hypothetical protein; Provisional
Probab=53.92 E-value=1.1e+02 Score=27.92 Aligned_cols=83 Identities=12% Similarity=0.068 Sum_probs=56.5
Q ss_pred CCceEEEEEeCCCC-cChHHHHHHHHHHHhcCCCCc-EEEeccc-------CCHHHHHHhcCEEEEccCCcccccchHHH
Q 012132 306 VPSVHAVIIGSDMN-AQTKFESELRNYVMQKKIQDR-VHFVNKT-------LTVAPYLAAIDVLVQNSQAWGECFGRITI 376 (470)
Q Consensus 306 ~~~~~l~ivG~g~~-~~~~~~~~l~~~~~~~~l~~~-V~~~g~~-------~~~~~~~~~aDv~v~pS~~~~E~~g~~~l 376 (470)
++..++++.|+... ...+..+.+++.+.++|++.. +...+.. ....+++....+++.+| .-.++.+..
T Consensus 119 ~~~~~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~Ii~e~~s~nT~eNa~~~~~~~~~~~iiLVTs---a~Hm~RA~~ 195 (259)
T PRK10494 119 NPGAKLIFTGGAAKTNTVSTAEVGARVAQSLGVPREDIITLDLPKDTEEEAAAVKQAIGDAPFLLVTS---ASHLPRAMI 195 (259)
T ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHeeeCCCCCCHHHHHHHHHHHhCCCCEEEECC---HHHHHHHHH
Confidence 47788999886432 222356667888889999765 4444421 22344555556888888 467888888
Q ss_pred HHHhcCCCEEecCCC
Q 012132 377 EAMAFQLPVLGTAAG 391 (470)
Q Consensus 377 EAma~G~PvI~s~~~ 391 (470)
.+-..|..++...++
T Consensus 196 ~f~~~Gl~v~p~Ptd 210 (259)
T PRK10494 196 FFQQEGLNPLPAPAN 210 (259)
T ss_pred HHHHcCCceeecCCc
Confidence 888899999977654
No 296
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=53.90 E-value=87 Score=23.63 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=29.3
Q ss_pred CHHHHHHhcCEEEEccCCcccccc-hHHHHHHhcCCCEEecCCCCcceee
Q 012132 349 TVAPYLAAIDVLVQNSQAWGECFG-RITIEAMAFQLPVLGTAAGGTTEIV 397 (470)
Q Consensus 349 ~~~~~~~~aDv~v~pS~~~~E~~g-~~~lEAma~G~PvI~s~~~g~~e~v 397 (470)
+....+..+|+++..+- .+... ...-+|-+.|+||-+.|.+...+++
T Consensus 53 ~~~~~l~~~~lV~~at~--d~~~n~~i~~~a~~~~i~vn~~D~p~~~dF~ 100 (103)
T PF13241_consen 53 EFEEDLDGADLVFAATD--DPELNEAIYADARARGILVNVVDDPELCDFI 100 (103)
T ss_dssp S-GGGCTTESEEEE-SS---HHHHHHHHHHHHHTTSEEEETT-CCCCSEE
T ss_pred hHHHHHhhheEEEecCC--CHHHHHHHHHHHhhCCEEEEECCCcCCCeEE
Confidence 33455778888877665 33333 3344666699999999988776654
No 297
>PRK06703 flavodoxin; Provisional
Probab=53.79 E-value=28 Score=28.46 Aligned_cols=36 Identities=8% Similarity=-0.028 Sum_probs=27.3
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
|||+++-.. ..|..+..+..+++.|.+.|++|.+.-
T Consensus 2 mkv~IiY~S-~tGnT~~iA~~ia~~l~~~g~~v~~~~ 37 (151)
T PRK06703 2 AKILIAYAS-MSGNTEDIADLIKVSLDAFDHEVVLQE 37 (151)
T ss_pred CeEEEEEEC-CCchHHHHHHHHHHHHHhcCCceEEEe
Confidence 577766643 234448999999999999999998875
No 298
>PRK07714 hypothetical protein; Provisional
Probab=53.76 E-value=94 Score=23.41 Aligned_cols=76 Identities=12% Similarity=0.181 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEc
Q 012132 284 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQN 363 (470)
Q Consensus 284 g~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~p 363 (470)
|.+.++++++. ..++++|+....+. ...+.+...++..+++ +.+.+..+++-..+......+..
T Consensus 22 G~~~v~~al~~------------g~~~lViiA~D~s~--~~~~ki~~~~~~~~vp--~~~~~sk~eLG~a~Gk~~~~~va 85 (100)
T PRK07714 22 GEELVLKEVRS------------GKAKLVLLSEDASV--NTTKKITDKCTYYNVP--MRKVENRQQLGHAIGKDERVVVA 85 (100)
T ss_pred cHHHHHHHHHh------------CCceEEEEeCCCCH--HHHHHHHHHHHhcCCC--EEEeCCHHHHHHHhCCCcceEEE
Confidence 67788887753 46788888765332 3677788888877765 44455557777777654333333
Q ss_pred cCCcccccchHHHH
Q 012132 364 SQAWGECFGRITIE 377 (470)
Q Consensus 364 S~~~~E~~g~~~lE 377 (470)
-. .++|.-.+++
T Consensus 86 i~--d~g~a~~l~~ 97 (100)
T PRK07714 86 VL--DEGFAKKLRS 97 (100)
T ss_pred Ee--CchhHHHHHH
Confidence 23 4556555554
No 299
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=53.68 E-value=28 Score=30.18 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=29.4
Q ss_pred cEEEEEeeccCCCch-hHHHHHHHHHHHh-CCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGG-PLLLMELAFLLRG-VGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~-~~~~~~l~~~L~~-~G~~V~v~~~~ 113 (470)
|||+++..+. .|. .+.+..+++.+.+ .|.+|.++...
T Consensus 2 ~kilIvy~S~--~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 2 AKVLVLYYSM--YGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CeEEEEEcCC--CCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 5888888544 454 7888889999988 89999998854
No 300
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=53.68 E-value=32 Score=29.64 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=30.3
Q ss_pred cEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|||++++.+...++- ...+...++.+.+.|++|.++...
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~ 40 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQ 40 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEcc
Confidence 689999887766555 466777778888899999988744
No 301
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=53.62 E-value=1.2e+02 Score=29.17 Aligned_cols=83 Identities=13% Similarity=0.022 Sum_probs=47.9
Q ss_pred ccEEEEEeecc-CCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 74 SKLVLLVSHEL-SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 74 ~~kIl~v~~~~-~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
..||+++.... ..|-+.++...++..+...|.+|++.++..-...........+.....|..+......... -...|
T Consensus 170 g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea--~~~aD 247 (357)
T TIGR03316 170 GKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEA--FKDAD 247 (357)
T ss_pred CCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHH--hCCCC
Confidence 46788875432 2232346778899999999999999987644333333222222333455554333333222 24688
Q ss_pred EEEEcc
Q 012132 153 LIVLNT 158 (470)
Q Consensus 153 iV~~~~ 158 (470)
+|+...
T Consensus 248 vvyt~~ 253 (357)
T TIGR03316 248 IVYPKS 253 (357)
T ss_pred EEEECC
Confidence 888864
No 302
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=53.61 E-value=1.5e+02 Score=25.77 Aligned_cols=118 Identities=12% Similarity=0.093 Sum_probs=62.9
Q ss_pred HHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCC
Q 012132 258 EHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 337 (470)
Q Consensus 258 ~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l 337 (470)
+.+++++.......+++++|. -..|=|-++ ++++|.. ..-++.++..|+.... ..+..+...+.++.
T Consensus 38 ~~i~~~~~~~~~~~v~vlcG~--GnNGGDG~V-aAR~L~~-------~G~~V~v~~~~~~~~~---~~~~a~~~~~~l~~ 104 (203)
T COG0062 38 RAILREYPLGRARRVLVLCGP--GNNGGDGLV-AARHLKA-------AGYAVTVLLLGDPKKL---KTEAARANLKSLGI 104 (203)
T ss_pred HHHHHHcCcccCCEEEEEECC--CCccHHHHH-HHHHHHh-------CCCceEEEEeCCCCCc---cHHHHHHHHHhhcC
Confidence 456666654334566777773 456667765 4455533 2246888888875321 23333334344444
Q ss_pred CCcEEEecccCCHHHHHHhcCEEEEccC----C--cccccchHHHHHHhcCCCEEecCCCC
Q 012132 338 QDRVHFVNKTLTVAPYLAAIDVLVQNSQ----A--WGECFGRITIEAMAFQLPVLGTAAGG 392 (470)
Q Consensus 338 ~~~V~~~g~~~~~~~~~~~aDv~v~pS~----~--~~E~~g~~~lEAma~G~PvI~s~~~g 392 (470)
...+...... +....+|++|=.-. . -.|.+...+-..-..|+|||+-|++.
T Consensus 105 ~~~v~~~~~~----~~~~~~dvIVDalfG~G~~g~lrep~a~~Ie~iN~~~~pivAVDiPS 161 (203)
T COG0062 105 GGVVKIKELE----DEPESADVIVDALFGTGLSGPLREPFASLIEAINASGKPIVAVDIPS 161 (203)
T ss_pred Ccceeecccc----cccccCCEEEEeceecCCCCCCccHHHHHHHHHHhcCCceEEEeCCC
Confidence 3223332221 16677888874222 0 02333333333445999999998764
No 303
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=53.49 E-value=98 Score=28.65 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.0
Q ss_pred chhHHHHHHHHHHHhCCceEEEEecC
Q 012132 88 GGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
||..+-..+++.|.++|++|.++...
T Consensus 8 ggd~r~~~~~~~l~~~g~~v~~~g~~ 33 (287)
T TIGR02853 8 GGDARQLELIRKLEELDAKISLIGFD 33 (287)
T ss_pred cccHHHHHHHHHHHHCCCEEEEEecc
Confidence 55567888999999999999999754
No 304
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=53.21 E-value=1.3e+02 Score=26.49 Aligned_cols=85 Identities=15% Similarity=0.119 Sum_probs=51.9
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc-------cCCHHHHHHhcCEEEEccCC-------ccc-cc
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-------TLTVAPYLAAIDVLVQNSQA-------WGE-CF 371 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~-------~~~~~~~~~~aDv~v~pS~~-------~~E-~~ 371 (470)
++.+++++.........+.+++.+..+++|.. .+.++-. ..++.+.+..+|++++..-+ |.+ ++
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~-~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l 106 (217)
T cd03145 28 AGARIVVIPAASEEPAEVGEEYRDVFERLGAR-EVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPL 106 (217)
T ss_pred CCCcEEEEeCCCcChhHHHHHHHHHHHHcCCc-eeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChH
Confidence 34566776654322234566777777888875 3333321 24567889999998875421 111 22
Q ss_pred chHHHHHHhcCCCEEecCCCC
Q 012132 372 GRITIEAMAFQLPVLGTAAGG 392 (470)
Q Consensus 372 g~~~lEAma~G~PvI~s~~~g 392 (470)
--.+-++...|+|++.+..|.
T Consensus 107 ~~~l~~~~~~G~v~~G~SAGA 127 (217)
T cd03145 107 LDALRKVYRGGVVIGGTSAGA 127 (217)
T ss_pred HHHHHHHHHcCCEEEEccHHH
Confidence 234567788999999887665
No 305
>PRK05920 aromatic acid decarboxylase; Validated
Probab=53.19 E-value=31 Score=30.01 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=28.0
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
++|||++-.+. +.+.....++++.|.+.|++|.++....
T Consensus 2 ~~krIllgITG---siaa~ka~~lvr~L~~~g~~V~vi~T~~ 40 (204)
T PRK05920 2 KMKRIVLAITG---ASGAIYGVRLLECLLAADYEVHLVISKA 40 (204)
T ss_pred CCCEEEEEEeC---HHHHHHHHHHHHHHHHCCCEEEEEEChh
Confidence 35677766541 1124678899999999999999998543
No 306
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=53.14 E-value=62 Score=28.20 Aligned_cols=73 Identities=10% Similarity=0.101 Sum_probs=39.3
Q ss_pred cccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHh-cCCCCcEEEecccCCHHHHHHhc
Q 012132 279 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQDRVHFVNKTLTVAPYLAAI 357 (470)
Q Consensus 279 l~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~-~~l~~~V~~~g~~~~~~~~~~~a 357 (470)
++|.|- +.+.+.++.+.+ -....+++|+...-......++-+.+++ .+++ -+.|.|..+.+ -..+
T Consensus 5 iDP~k~-e~~~~ia~~v~~---------~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lP-vilfp~~~~~i---~~~a 70 (205)
T TIGR01769 5 IDPEKS-DEIEKIAKNAKD---------AGTDAIMVGGSLGIVESNLDQTVKKIKKITNLP-VILFPGNVNGL---SRYA 70 (205)
T ss_pred cCCCcH-HHHHHHHHHHHh---------cCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCC-EEEECCCcccc---CcCC
Confidence 456665 444444444432 3355677775422222234444444555 4554 56677765443 3569
Q ss_pred CEEEEccC
Q 012132 358 DVLVQNSQ 365 (470)
Q Consensus 358 Dv~v~pS~ 365 (470)
|.+++||.
T Consensus 71 D~~~~~sl 78 (205)
T TIGR01769 71 DAVFFMSL 78 (205)
T ss_pred CEEEEEEe
Confidence 99999985
No 307
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=52.69 E-value=89 Score=24.09 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhCCceEEEEec
Q 012132 91 LLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
.-+..++..|++.||+|.++-.
T Consensus 15 lGl~~la~~l~~~G~~v~~~d~ 36 (121)
T PF02310_consen 15 LGLLYLAAYLRKAGHEVDILDA 36 (121)
T ss_dssp HHHHHHHHHHHHTTBEEEEEES
T ss_pred HHHHHHHHHHHHCCCeEEEECC
Confidence 4478889999999999998853
No 308
>PRK13556 azoreductase; Provisional
Probab=52.49 E-value=47 Score=28.97 Aligned_cols=41 Identities=15% Similarity=0.023 Sum_probs=29.2
Q ss_pred ccEEEEEeeccCC--Cch-hHHHHHHHHHHHhC--CceEEEEecCC
Q 012132 74 SKLVLLVSHELSL--SGG-PLLLMELAFLLRGV--GTKVNWITIQK 114 (470)
Q Consensus 74 ~~kIl~v~~~~~~--~G~-~~~~~~l~~~L~~~--G~~V~v~~~~~ 114 (470)
|||||+|..+... ++. ......+++.+.+. |++|.++-...
T Consensus 1 m~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~ 46 (208)
T PRK13556 1 MSKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYK 46 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 4789999877653 443 35667777788775 89999987543
No 309
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=52.10 E-value=27 Score=32.49 Aligned_cols=40 Identities=13% Similarity=-0.098 Sum_probs=30.2
Q ss_pred ccccEEEEEeeccCC-Cch-hHHHHHHHHHHHhCCceEEEEe
Q 012132 72 MKSKLVLLVSHELSL-SGG-PLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~-~G~-~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
|.++||+++....+. .-. -+.....+++|.+.||+|..+.
T Consensus 1 ~~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~ 42 (296)
T PRK14569 1 MKNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVD 42 (296)
T ss_pred CCCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEc
Confidence 567899999865443 111 2678889999999999998874
No 310
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=51.55 E-value=93 Score=29.56 Aligned_cols=78 Identities=9% Similarity=0.064 Sum_probs=45.2
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
..+||+++.... ..++..++..+...|.+|.++++..-.+...............|..+......... ....|
T Consensus 155 ~gl~ia~vGD~~-----~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a--~~~aD 227 (334)
T PRK01713 155 SEISYVYIGDAR-----NNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKA--VKGVD 227 (334)
T ss_pred CCcEEEEECCCc-----cCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHH--hCCCC
Confidence 457899887521 13678888889999999999886544333322222223333345444333322222 23678
Q ss_pred EEEEc
Q 012132 153 LIVLN 157 (470)
Q Consensus 153 iV~~~ 157 (470)
+|+..
T Consensus 228 vVyt~ 232 (334)
T PRK01713 228 FVHTD 232 (334)
T ss_pred EEEEc
Confidence 88874
No 311
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=50.89 E-value=95 Score=28.29 Aligned_cols=88 Identities=10% Similarity=0.100 Sum_probs=55.3
Q ss_pred HHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHh--CHH
Q 012132 351 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT--HVE 428 (470)
Q Consensus 351 ~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~--~~~ 428 (470)
..-++.||++|..... .|++=-.+++.+ .+.+++....++..+ -.....-+..+|.+ ...++++|.+.+. ||+
T Consensus 47 ~~~l~~ADliv~~G~~-lE~~~~k~~~~~-~~~~v~~~~~~~~~~-~~~~dPH~Wldp~n--~~~~a~~I~~~L~~~dP~ 121 (264)
T cd01020 47 AAKVSTADIVVYNGGG-YDPWMTKLLADT-KDVIVIAADLDGHDD-KEGDNPHLWYDPET--MSKVANALADALVKADPD 121 (264)
T ss_pred HHHHhhCCEEEEeCCC-chHHHHHHHHhc-CCceEEeeecccccC-CCCCCCceecCHhH--HHHHHHHHHHHHHHhCcc
Confidence 4557889999977652 566555566555 455666554333211 00113345666666 8888888888887 787
Q ss_pred HHHHHHHHHHHHHHH
Q 012132 429 RRLTMGKRGYERVKE 443 (470)
Q Consensus 429 ~~~~~~~~a~~~~~~ 443 (470)
-.....+|+.++..+
T Consensus 122 ~~~~y~~N~~~~~~~ 136 (264)
T cd01020 122 NKKYYQANAKKFVAS 136 (264)
T ss_pred cHHHHHHHHHHHHHH
Confidence 777777777776654
No 312
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=50.75 E-value=1.8e+02 Score=26.75 Aligned_cols=82 Identities=24% Similarity=0.170 Sum_probs=46.4
Q ss_pred cEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCCh----h----h-
Q 012132 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ----E----T- 144 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~- 144 (470)
++|..+. .++|-| ...+..||..|.+.|+.|.+++.+.... .....+.......++.++..... . .
T Consensus 72 ~~vi~l~--G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~--~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 72 PNVILFV--GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA--AAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CeEEEEE--CCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH--HHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 4555555 233333 6789999999999999999998553211 11223444445556665532211 1 0
Q ss_pred -HHhhcCCcEEEEcccc
Q 012132 145 -INTALKADLIVLNTAV 160 (470)
Q Consensus 145 -~~~~~~~DiV~~~~~~ 160 (470)
.....++|+|++.++.
T Consensus 148 ~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHCCCCEEEEeCCC
Confidence 1123567777776643
No 313
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=50.72 E-value=30 Score=29.87 Aligned_cols=40 Identities=13% Similarity=0.040 Sum_probs=30.4
Q ss_pred cEEEEEeeccCC-Cch-hHHHHHHHHHHHhCC-ceEEEEecCC
Q 012132 75 KLVLLVSHELSL-SGG-PLLLMELAFLLRGVG-TKVNWITIQK 114 (470)
Q Consensus 75 ~kIl~v~~~~~~-~G~-~~~~~~l~~~L~~~G-~~V~v~~~~~ 114 (470)
||||+|..+..+ ++. ......+++++.+.| ++|.++-...
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~~~~~v~~~dL~~ 43 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQEAGPHEVEIRDLYE 43 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHHHTTSEEEEEETTT
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 799999977665 444 467788999999999 9999987544
No 314
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=50.69 E-value=54 Score=25.73 Aligned_cols=39 Identities=15% Similarity=0.054 Sum_probs=28.2
Q ss_pred cEEEEEeeccCCCc-hhHHHHHHHHHHHhCC-ceEEEEecC
Q 012132 75 KLVLLVSHELSLSG-GPLLLMELAFLLRGVG-TKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G-~~~~~~~l~~~L~~~G-~~V~v~~~~ 113 (470)
||+.++....+.|- ....+.++|++|.+.| ++|.+|-..
T Consensus 1 m~~~Ivvt~ppYg~q~a~~A~~fA~all~~gh~~v~iFly~ 41 (126)
T COG1553 1 MKYTIVVTGPPYGTESAFSALRFAEALLEQGHELVRLFLYQ 41 (126)
T ss_pred CeEEEEEecCCCccHHHHHHHHHHHHHHHcCCeEEEEEEee
Confidence 56777776554442 2578999999999996 788888744
No 315
>PRK05568 flavodoxin; Provisional
Probab=50.65 E-value=38 Score=27.27 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=27.7
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
++|+++-.+ ..|..+..+..+++.+.+.|++|.++...
T Consensus 2 ~~~~IvY~S-~~GnT~~~a~~i~~~~~~~g~~v~~~~~~ 39 (142)
T PRK05568 2 KKINIIYWS-GTGNTEAMANLIAEGAKENGAEVKLLNVS 39 (142)
T ss_pred CeEEEEEEC-CCchHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 456666543 23444889999999999999999988643
No 316
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=50.55 E-value=32 Score=28.19 Aligned_cols=37 Identities=16% Similarity=0.018 Sum_probs=28.8
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
||||+++..+.. |..+.++..++..|.+.|++|.+..
T Consensus 1 M~ki~Ivy~S~t-GnTe~vA~~i~~~l~~~~~~~~~~~ 37 (151)
T COG0716 1 MMKILIVYGSRT-GNTEKVAEIIAEELGADGFEVDIDI 37 (151)
T ss_pred CCeEEEEEEcCC-CcHHHHHHHHHHHhccCCceEEEee
Confidence 578888875432 4458999999999999999995554
No 317
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=50.52 E-value=32 Score=28.50 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=25.3
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
..++|+++. |+......++.|.+.|++|+|+.
T Consensus 12 ~~~~vlVvG-------GG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIG-------GGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEEC-------CCHHHHHHHHHHHhCCCEEEEEc
Confidence 456777763 34678888999999999999995
No 318
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=50.38 E-value=1.3e+02 Score=24.98 Aligned_cols=77 Identities=16% Similarity=0.206 Sum_probs=43.3
Q ss_pred eEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcCh---HHHHHHHHHHHhcCCCCcEEEeccc
Q 012132 271 LLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT---KFESELRNYVMQKKIQDRVHFVNKT 347 (470)
Q Consensus 271 ~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~---~~~~~l~~~~~~~~l~~~V~~~g~~ 347 (470)
..+.++|- +...+...+..+... -+..+.+++...-.-+ +..+..++.+.+.| ..+.+.
T Consensus 3 l~i~~vGD-----~~~rv~~Sl~~~~~~--------~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g--~~i~~~--- 64 (158)
T PF00185_consen 3 LKIAYVGD-----GHNRVAHSLIELLAK--------FGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG--GKITIT--- 64 (158)
T ss_dssp EEEEEESS-----TTSHHHHHHHHHHHH--------TTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT--TEEEEE---
T ss_pred CEEEEECC-----CCChHHHHHHHHHHH--------cCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC--CCeEEE---
Confidence 56788883 222333333333332 1356888887531111 23444455555554 356665
Q ss_pred CCHHHHHHhcCEEEEccC
Q 012132 348 LTVAPYLAAIDVLVQNSQ 365 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~ 365 (470)
+++.+.++.+|++...+.
T Consensus 65 ~~~~e~l~~aDvvy~~~~ 82 (158)
T PF00185_consen 65 DDIEEALKGADVVYTDRW 82 (158)
T ss_dssp SSHHHHHTT-SEEEEESS
T ss_pred eCHHHhcCCCCEEEEcCc
Confidence 688999999999877664
No 319
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=50.35 E-value=1.1e+02 Score=26.58 Aligned_cols=71 Identities=24% Similarity=0.226 Sum_probs=0.0
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCC
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (470)
...++|+++ ||+.....-++.|.+.|.+|+|+++...+ .+........+.++......... ..+
T Consensus 7 l~gk~vlVv-------GgG~va~rk~~~Ll~~ga~VtVvsp~~~~-------~l~~l~~~~~i~~~~~~~~~~dl--~~~ 70 (205)
T TIGR01470 7 LEGRAVLVV-------GGGDVALRKARLLLKAGAQLRVIAEELES-------ELTLLAEQGGITWLARCFDADIL--EGA 70 (205)
T ss_pred cCCCeEEEE-------CcCHHHHHHHHHHHHCCCEEEEEcCCCCH-------HHHHHHHcCCEEEEeCCCCHHHh--CCc
Q ss_pred cEEEEcc
Q 012132 152 DLIVLNT 158 (470)
Q Consensus 152 DiV~~~~ 158 (470)
|+|++.+
T Consensus 71 ~lVi~at 77 (205)
T TIGR01470 71 FLVIAAT 77 (205)
T ss_pred EEEEECC
No 320
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=50.19 E-value=1.9e+02 Score=28.85 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=72.9
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHhc---CCC
Q 012132 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF---QLP 384 (470)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~---G~P 384 (470)
+++|+-+.. ..+..+.+..+..|. .|.......+....+.. .|+++.=-. -.+.-|+.+++.+.. ++|
T Consensus 6 ~iLvVDDd~----~ir~~l~~~L~~~G~--~v~~a~~~~~al~~i~~~~~~lvl~Di~-mp~~~Gl~ll~~i~~~~~~~p 78 (464)
T COG2204 6 RILVVDDDP----DIRELLEQALELAGY--EVVTAESAEEALEALSESPFDLVLLDIR-MPGMDGLELLKEIKSRDPDLP 78 (464)
T ss_pred CEEEEeCCH----HHHHHHHHHHHHcCC--eEEEeCCHHHHHHHHhcCCCCEEEEecC-CCCCchHHHHHHHHhhCCCCC
Confidence 456666542 456667777777664 35555554444444444 366665444 245567888876665 689
Q ss_pred EEe-cCCCCc---ceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHH
Q 012132 385 VLG-TAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVER 429 (470)
Q Consensus 385 vI~-s~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~ 429 (470)
||. |..|.+ .+-+..|-..|+..|-+ ++.|...+.+.+.....
T Consensus 79 VI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~--~~~L~~~v~ral~~~~~ 125 (464)
T COG2204 79 VIVMTGHGDIDTAVEALRLGAFDFLEKPFD--LDRLLAIVERALELREL 125 (464)
T ss_pred EEEEeCCCCHHHHHHHHhcCcceeeeCCCC--HHHHHHHHHHHHHHhhh
Confidence 885 445553 44455677889999998 99999999999886543
No 321
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=50.07 E-value=48 Score=25.03 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=34.1
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe-cCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCcE
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT-IQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADL 153 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 153 (470)
||||++.+ || +-+.|+..|.+.-.--.+++ +.++.. ........+..........+.+..++|+
T Consensus 1 MkVLviGs-----Gg--REHAia~~l~~s~~v~~v~~aPGN~G~--------~~~~~~~~~~~~d~~~l~~~a~~~~idl 65 (100)
T PF02844_consen 1 MKVLVIGS-----GG--REHAIAWKLSQSPSVEEVYVAPGNPGT--------AELGKNVPIDITDPEELADFAKENKIDL 65 (100)
T ss_dssp EEEEEEES-----SH--HHHHHHHHHTTCTTEEEEEEEE--TTG--------GGTSEEE-S-TT-HHHHHHHHHHTTESE
T ss_pred CEEEEECC-----CH--HHHHHHHHHhcCCCCCEEEEeCCCHHH--------HhhceecCCCCCCHHHHHHHHHHcCCCE
Confidence 79999985 33 45667888876532224444 332221 1110011111111223345567789999
Q ss_pred EEEcc
Q 012132 154 IVLNT 158 (470)
Q Consensus 154 V~~~~ 158 (470)
|++-.
T Consensus 66 vvvGP 70 (100)
T PF02844_consen 66 VVVGP 70 (100)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 99864
No 322
>TIGR03010 sulf_tusC_dsrF sulfur relay protein TusC/DsrF. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=49.39 E-value=33 Score=26.70 Aligned_cols=39 Identities=5% Similarity=-0.013 Sum_probs=30.9
Q ss_pred EEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecCC
Q 012132 76 LVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 76 kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
||+|+.+..|.|.. .+-..+++-++...+++|.++....
T Consensus 1 kil~i~~~~Pyg~~~~~e~l~~al~~aa~~~eV~vff~~D 40 (116)
T TIGR03010 1 KLAFVFRQAPHGTASGREGLDALLAASAFDEDIGVFFIDD 40 (116)
T ss_pred CEEEEEcCCCCCcchHHHHHHHHHHHHhccCCeEEEEech
Confidence 58889887777664 5778888999999899999887543
No 323
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=49.27 E-value=48 Score=29.20 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=29.8
Q ss_pred cEEEEEeeccCC-Cchh-HHHHHHHHHHHhCCceEEEEecCC
Q 012132 75 KLVLLVSHELSL-SGGP-LLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 75 ~kIl~v~~~~~~-~G~~-~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
+||+++...... +|.+ .=+..-...|.+.|++|+++++..
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~ 43 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDI 43 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 589998875544 4543 445666888999999999999754
No 324
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=48.87 E-value=1.1e+02 Score=28.93 Aligned_cols=79 Identities=9% Similarity=-0.015 Sum_probs=45.9
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
..++|+++.... .+++..++..+...|.+|+++++..-.+...............|..+.......... ...|
T Consensus 155 ~gl~va~vGD~~-----~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~--~~aD 227 (334)
T PRK12562 155 NEMTLVYAGDAR-----NNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGV--KGAD 227 (334)
T ss_pred CCcEEEEECCCC-----CCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHh--CCCC
Confidence 357888887531 247788888889999999999876543333333322233333454443333232222 3678
Q ss_pred EEEEcc
Q 012132 153 LIVLNT 158 (470)
Q Consensus 153 iV~~~~ 158 (470)
+|+...
T Consensus 228 vvyt~~ 233 (334)
T PRK12562 228 FIYTDV 233 (334)
T ss_pred EEEEcC
Confidence 888754
No 325
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.71 E-value=50 Score=26.86 Aligned_cols=73 Identities=11% Similarity=0.048 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeec
Q 012132 323 KFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN 399 (470)
Q Consensus 323 ~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~ 399 (470)
|-.+++.+.++++|+. |+|.-........-......+.-+- .|.--.-++|-.--|=-||+.|+|=...++..
T Consensus 12 PVk~~i~r~A~r~~~~--v~~Van~~~~~~~~~~i~~v~V~~g--~DaaD~~Iv~~a~~gDlVVT~Di~LA~~ll~k 84 (150)
T COG1671 12 PVKDEIYRVAERMGLK--VTFVANFPHRVPPSPEIRTVVVDAG--FDAADDWIVNLAEKGDLVVTADIPLASLLLDK 84 (150)
T ss_pred chHHHHHHHHHHhCCe--EEEEeCCCccCCCCCceeEEEecCC--cchHHHHHHHhCCCCCEEEECchHHHHHHHhc
Confidence 4788899999998874 7776643221112223344444443 56666778888888888999998877776643
No 326
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=48.48 E-value=54 Score=30.38 Aligned_cols=69 Identities=13% Similarity=0.020 Sum_probs=39.3
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEe-----cCChhhHHhhc
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS-----AKGQETINTAL 149 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 149 (470)
|+||+. ||+.-.-...+..|.+.||+|+|+-.-...... .+...-.+++. ......++...
T Consensus 1 ~~iLVt------GGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~--------~v~~~~~~f~~gDi~D~~~L~~vf~~~ 66 (329)
T COG1087 1 MKVLVT------GGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKI--------ALLKLQFKFYEGDLLDRALLTAVFEEN 66 (329)
T ss_pred CeEEEe------cCcchhHHHHHHHHHHCCCeEEEEecCCCCCHH--------HhhhccCceEEeccccHHHHHHHHHhc
Confidence 456654 355555667788888999999999733222111 11111022222 23445667788
Q ss_pred CCcEEEEc
Q 012132 150 KADLIVLN 157 (470)
Q Consensus 150 ~~DiV~~~ 157 (470)
++|.|+-.
T Consensus 67 ~idaViHF 74 (329)
T COG1087 67 KIDAVVHF 74 (329)
T ss_pred CCCEEEEC
Confidence 99977643
No 327
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=48.31 E-value=1.4e+02 Score=27.89 Aligned_cols=69 Identities=12% Similarity=0.181 Sum_probs=46.7
Q ss_pred EEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCce-EEEEEeCCCCc----ChHHHHHHHHHHHhcCCCCcEEEec
Q 012132 273 FAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSV-HAVIIGSDMNA----QTKFESELRNYVMQKKIQDRVHFVN 345 (470)
Q Consensus 273 i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~-~l~ivG~g~~~----~~~~~~~l~~~~~~~~l~~~V~~~g 345 (470)
.+++| ....--+.+++++++-.+..... .+|++ +|+|..++... ..-+..+|++++.++|+.-+|...+
T Consensus 150 ~v~vg--~s~dTa~Fav~~i~~WW~~~g~~--~yp~a~~lli~~D~GgsN~~r~r~wk~~L~~la~~~gl~I~v~hyP 223 (311)
T PF07592_consen 150 WVSVG--TSHDTADFAVDSIRRWWEEMGKA--RYPHAKRLLITADNGGSNGSRRRLWKKRLQELADETGLSIRVCHYP 223 (311)
T ss_pred EEEEe--cCcccHHHHHHHHHHHHHHhChh--hcCchheEEEeccCCCCccchhHHHHHHHHHHHHHhCCEEEEEEcC
Confidence 44566 45566788999998877665332 57776 56666554321 1237889999999999987765555
No 328
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=48.13 E-value=42 Score=31.95 Aligned_cols=36 Identities=19% Similarity=0.163 Sum_probs=25.2
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
++.|+|++.. |..-.-..+++.|.+.||+|.++...
T Consensus 2 ~~~k~ilItG------atG~IG~~l~~~L~~~G~~V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTG------HTGFKGSWLSLWLLELGAEVYGYSLD 37 (349)
T ss_pred cCCCEEEEEC------CCChhHHHHHHHHHHCCCEEEEEeCC
Confidence 3456776654 22345578889999999999887643
No 329
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=48.02 E-value=1.2e+02 Score=28.66 Aligned_cols=78 Identities=15% Similarity=0.099 Sum_probs=45.4
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
+..||+++...- .+++..++..+...|.+|.++++..-.................|..+......... -...|
T Consensus 154 ~g~~va~vGd~~-----~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea--~~~aD 226 (331)
T PRK02102 154 KGLKLAYVGDGR-----NNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEA--VKGAD 226 (331)
T ss_pred CCCEEEEECCCc-----ccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHH--hCCCC
Confidence 457899886421 24788888899999999999987654433333222222333345444332222222 23678
Q ss_pred EEEEc
Q 012132 153 LIVLN 157 (470)
Q Consensus 153 iV~~~ 157 (470)
+|+.-
T Consensus 227 vvyt~ 231 (331)
T PRK02102 227 VIYTD 231 (331)
T ss_pred EEEEc
Confidence 88874
No 330
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=47.88 E-value=1.9e+02 Score=25.21 Aligned_cols=146 Identities=13% Similarity=0.045 Sum_probs=76.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcE--EEeccc--CCHHHHHHhc
Q 012132 282 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV--HFVNKT--LTVAPYLAAI 357 (470)
Q Consensus 282 ~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V--~~~g~~--~~~~~~~~~a 357 (470)
.|-+..+..|+.-+.. + ..-.++++|... .....+++.++..|.. .| +++|-. +-....+..=
T Consensus 49 ~kT~~~L~~A~~~i~~-~-------~~~~ILfVgTk~----~~~~~v~k~A~~~g~~-~v~~RWlgG~LTN~~~~~~~~P 115 (204)
T PRK04020 49 RKTDERIRIAAKFLSR-Y-------EPEKILVVSSRQ----YGQKPVQKFAEVVGAK-AITGRFIPGTLTNPSLKGYIEP 115 (204)
T ss_pred HHHHHHHHHHHHHHHH-h-------cCCeEEEEeCCH----HHHHHHHHHHHHhCCe-eecCccCCCcCcCcchhccCCC
Confidence 3444555555544433 1 233677778762 2445566666666532 11 345421 2122223344
Q ss_pred CEEEEccCCcccccchHHHHHHhcCCCEEec-CCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHH
Q 012132 358 DVLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKR 436 (470)
Q Consensus 358 Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~s-~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~ 436 (470)
|++++... ..=..++.||...|+|+|+- |...-++.| .+.+|.+|+ .-.-..-+..++.+.-++
T Consensus 116 dliiv~dp---~~~~~AI~EA~kl~IP~IaivDTn~dp~~V-----dypIP~Ndd-s~~SI~li~~ll~~aIl~------ 180 (204)
T PRK04020 116 DVVVVTDP---RGDAQAVKEAIEVGIPVVALCDTDNLTSNV-----DLVIPTNNK-GRKALALVYWLLAREILR------ 180 (204)
T ss_pred CEEEEECC---cccHHHHHHHHHhCCCEEEEEeCCCCcccC-----ceeECCCCc-hHHHHHHHHHHHHHHHHH------
Confidence 66555443 22267899999999999985 444445554 266776663 334444455555432221
Q ss_pred HHHHHHHHcChhHHHHHHH
Q 012132 437 GYERVKEIFQEHHMAERIA 455 (470)
Q Consensus 437 a~~~~~~~fs~~~~~~~~~ 455 (470)
++..+.+.-.|+...+.++
T Consensus 181 ~kg~~~~~~~~~v~~~~f~ 199 (204)
T PRK04020 181 ERGEIKPDEDLPVPVEDFE 199 (204)
T ss_pred hhCccCCCCCCCcCHHHHh
Confidence 2233444456666665544
No 331
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=47.77 E-value=1.6e+02 Score=27.99 Aligned_cols=84 Identities=10% Similarity=0.061 Sum_probs=46.0
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec-CCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCC
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI-QKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (470)
+.+||+++.-...--...+++..++..+...|.+|+++++ ..-.................|..+......... -...
T Consensus 168 ~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea--~~~a 245 (335)
T PRK04523 168 RGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSA--YAGA 245 (335)
T ss_pred CCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHH--hCCC
Confidence 3567766421110000137899999999999999999987 443333333322223334455554433333222 2467
Q ss_pred cEEEEcc
Q 012132 152 DLIVLNT 158 (470)
Q Consensus 152 DiV~~~~ 158 (470)
|+|+...
T Consensus 246 Dvvy~~~ 252 (335)
T PRK04523 246 DVVYAKS 252 (335)
T ss_pred CEEEece
Confidence 8888753
No 332
>PLN03007 UDP-glucosyltransferase family protein
Probab=47.57 E-value=37 Score=34.22 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=30.9
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
+.+|+++. ++.-|.-.-+.+|++.|..+|++|++++...
T Consensus 5 ~~hVvlvp--~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~ 43 (482)
T PLN03007 5 KLHILFFP--FMAHGHMIPTLDMAKLFSSRGAKSTILTTPL 43 (482)
T ss_pred CcEEEEEC--CCccccHHHHHHHHHHHHhCCCEEEEEECCC
Confidence 35787777 4445666789999999999999999999653
No 333
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=47.31 E-value=40 Score=29.08 Aligned_cols=38 Identities=18% Similarity=-0.004 Sum_probs=27.2
Q ss_pred cccEEEEEeeccCCCch-hHH-HHHHHHHHHhCCceEEEEecCC
Q 012132 73 KSKLVLLVSHELSLSGG-PLL-LMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~-~~~-~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
+.+||++-.+ ||. ... ..++++.|.+.|++|.++....
T Consensus 4 ~~k~IllgVT----Gsiaa~k~a~~lir~L~k~G~~V~vv~T~a 43 (196)
T PRK08305 4 KGKRIGFGLT----GSHCTYDEVMPEIEKLVDEGAEVTPIVSYT 43 (196)
T ss_pred CCCEEEEEEc----CHHHHHHHHHHHHHHHHhCcCEEEEEECHh
Confidence 4567776553 222 345 5899999999999999887543
No 334
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=46.79 E-value=2.7e+02 Score=26.76 Aligned_cols=94 Identities=12% Similarity=-0.034 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcC---------hHHHHHHHHHHHhcCCCCcEEEecc-cCCHHH
Q 012132 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ---------TKFESELRNYVMQKKIQDRVHFVNK-TLTVAP 352 (470)
Q Consensus 283 Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~---------~~~~~~l~~~~~~~~l~~~V~~~g~-~~~~~~ 352 (470)
..-+.+++.+..+.+ ..++++..|...+.. .+....+.+..+++|++ +.-..+ ..++..
T Consensus 129 E~~~~~~~~A~~lk~---------~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~--~~t~v~d~~~~~~ 197 (360)
T PRK12595 129 ESYEQVEAVAKALKA---------KGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLA--VISEIVNPADVEV 197 (360)
T ss_pred cCHHHHHHHHHHHHH---------cCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCC--EEEeeCCHHHHHH
Confidence 446677777777644 345555555322211 13567888888999885 222222 255555
Q ss_pred HHHhcCEEEEccCCcccccchHHHHHH-hcCCCEEecCC
Q 012132 353 YLAAIDVLVQNSQAWGECFGRITIEAM-AFQLPVLGTAA 390 (470)
Q Consensus 353 ~~~~aDv~v~pS~~~~E~~g~~~lEAm-a~G~PvI~s~~ 390 (470)
+...+|++-.+|. +..-..+++++ ..|+||+.+..
T Consensus 198 l~~~vd~lkI~s~---~~~n~~LL~~~a~~gkPVilk~G 233 (360)
T PRK12595 198 ALDYVDVIQIGAR---NMQNFELLKAAGRVNKPVLLKRG 233 (360)
T ss_pred HHHhCCeEEECcc---cccCHHHHHHHHccCCcEEEeCC
Confidence 5566999999996 44445666554 57999998863
No 335
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=46.78 E-value=66 Score=28.71 Aligned_cols=54 Identities=15% Similarity=0.081 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhc
Q 012132 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI 357 (470)
Q Consensus 289 l~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~a 357 (470)
..+|+.+.++.+. |++.++++|+|. .+ ++.++.++.+ +.-++...++..++.+-
T Consensus 216 ~~cFe~I~~Rfg~-----p~~~f~~IGDG~-----eE---e~aAk~l~wP--Fw~I~~h~Dl~~l~~aL 269 (274)
T TIGR01658 216 LQCFKWIKERFGH-----PKVRFCAIGDGW-----EE---CTAAQAMNWP--FVKIDLHPDSSHRFPGL 269 (274)
T ss_pred HHHHHHHHHHhCC-----CCceEEEeCCCh-----hH---HHHHHhcCCC--eEEeecCCCHHHhCccC
Confidence 3566666665543 799999999993 22 2455666654 33334445665555443
No 336
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=46.70 E-value=1.7e+02 Score=27.22 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=51.4
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
+.+|++++... ..+...|...-+..|.+|++.++.+-.+.........+.....|..+.-...... .....|
T Consensus 152 ~g~k~a~vGDg------NNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~e--Av~gAD 223 (310)
T COG0078 152 KGLKLAYVGDG------NNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEE--AVKGAD 223 (310)
T ss_pred cCcEEEEEcCc------chHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHH--HhCCCC
Confidence 45788888753 5788889999999999999999887766665555444444444544433222221 124678
Q ss_pred EEEEcc
Q 012132 153 LIVLNT 158 (470)
Q Consensus 153 iV~~~~ 158 (470)
+|+.-.
T Consensus 224 vvyTDv 229 (310)
T COG0078 224 VVYTDV 229 (310)
T ss_pred EEEecC
Confidence 888764
No 337
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=46.55 E-value=1.2e+02 Score=24.91 Aligned_cols=107 Identities=16% Similarity=0.158 Sum_probs=69.7
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhc---CEEEEccCCcccccchHHHHHHhcCC
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI---DVLVQNSQAWGECFGRITIEAMAFQL 383 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~a---Dv~v~pS~~~~E~~g~~~lEAma~G~ 383 (470)
|+-.|+++-+.. ++...|..-.+.-|.. |..-..+++-....+.. -++|---. ..|.|+.++|++....
T Consensus 8 pd~~lllvdDD~----~f~~~LaRa~e~RGf~--v~~a~~~~eal~~art~~PayAvvDlkL--~~gsGL~~i~~lr~~~ 79 (182)
T COG4567 8 PDKSLLLVDDDT----PFLRTLARAMERRGFA--VVTAESVEEALAAARTAPPAYAVVDLKL--GDGSGLAVIEALRERR 79 (182)
T ss_pred CCceeEEecCCh----HHHHHHHHHHhccCce--eEeeccHHHHHHHHhcCCCceEEEEeee--cCCCchHHHHHHHhcC
Confidence 555788887753 6788888777777753 44444333322222221 12222223 6789999999998876
Q ss_pred C----EEecCCCCcc---eeeecCceeeeecCCCCChHHHHHHHHHH
Q 012132 384 P----VLGTAAGGTT---EIVVNGTTGLLHPVGKEGITPLAKNIVKL 423 (470)
Q Consensus 384 P----vI~s~~~g~~---e~v~~~~~G~l~~~~d~~~~~la~~i~~l 423 (470)
| ||.|..+.+. |-|.-|..-++..|.| .+++..++.+-
T Consensus 80 ~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAd--aDdi~aAl~~~ 124 (182)
T COG4567 80 ADMRIVVLTGYASIATAVEAVKLGACDYLAKPAD--ADDILAALLRR 124 (182)
T ss_pred CcceEEEEecchHHHHHHHHHHhhhhhhcCCCCC--hHHHHHHHhhc
Confidence 5 6777766654 4455577778999988 88988888765
No 338
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.35 E-value=1.8e+02 Score=28.88 Aligned_cols=73 Identities=23% Similarity=0.307 Sum_probs=42.2
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
+.++|+++. +|. .-..+++.|.+.|++|+++....... .......+...++.++....... ....+|
T Consensus 4 ~~k~v~iiG------~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~--~~~~~d 70 (450)
T PRK14106 4 KGKKVLVVG------AGV-SGLALAKFLKKLGAKVILTDEKEEDQ----LKEALEELGELGIELVLGEYPEE--FLEGVD 70 (450)
T ss_pred CCCEEEEEC------CCH-HHHHHHHHHHHCCCEEEEEeCCchHH----HHHHHHHHHhcCCEEEeCCcchh--HhhcCC
Confidence 456776664 222 45589999999999999986532111 11112233445666554433332 234689
Q ss_pred EEEEcc
Q 012132 153 LIVLNT 158 (470)
Q Consensus 153 iV~~~~ 158 (470)
+|+...
T Consensus 71 ~vv~~~ 76 (450)
T PRK14106 71 LVVVSP 76 (450)
T ss_pred EEEECC
Confidence 888765
No 339
>PRK11914 diacylglycerol kinase; Reviewed
Probab=46.29 E-value=55 Score=30.59 Aligned_cols=45 Identities=20% Similarity=0.065 Sum_probs=32.7
Q ss_pred ccccccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecCC
Q 012132 70 SFMKSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 70 ~~~~~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
.-|.+||+++|.+..+-+|. .+...++.+.|.+.|+++.++....
T Consensus 4 ~~~~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~ 49 (306)
T PRK11914 4 RRHEIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD 49 (306)
T ss_pred CcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 34566888888876554333 5677789999999999988776443
No 340
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=46.25 E-value=47 Score=27.65 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=29.3
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
||+|+-++. +..+|=-..+..+++.|.++||.|.++--.
T Consensus 1 m~~Il~ivG-~k~SGKTTLie~lv~~L~~~G~rVa~iKH~ 39 (161)
T COG1763 1 MMKILGIVG-YKNSGKTTLIEKLVRKLKARGYRVATVKHA 39 (161)
T ss_pred CCcEEEEEe-cCCCChhhHHHHHHHHHHhCCcEEEEEEec
Confidence 356666664 333455789999999999999999998733
No 341
>PLN02285 methionyl-tRNA formyltransferase
Probab=46.16 E-value=71 Score=30.35 Aligned_cols=83 Identities=14% Similarity=0.184 Sum_probs=40.6
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHh--CCceEEEEecCCCCCchh----HHHhhhhhhhhccee---eEecCC--
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRG--VGTKVNWITIQKPSEEDE----VIYSLEHKMWDRGVQ---VISAKG-- 141 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~--~G~~V~v~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~-- 141 (470)
++|||+|+.+... + ...+..|...... .+++|..+...++..... ..........+.|++ ++....
T Consensus 5 ~~~kI~f~Gt~~f--a-~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~~ 81 (334)
T PLN02285 5 RKKRLVFLGTPEV--A-ATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAG 81 (334)
T ss_pred CccEEEEEECCHH--H-HHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccccC
Confidence 4689999975320 0 1233333333221 368877665443332111 011133445566777 332211
Q ss_pred ---hhhHHhhcCCcEEEEcc
Q 012132 142 ---QETINTALKADLIVLNT 158 (470)
Q Consensus 142 ---~~~~~~~~~~DiV~~~~ 158 (470)
.....+..+||++++..
T Consensus 82 ~~~~~~~l~~~~~Dliv~~~ 101 (334)
T PLN02285 82 EEDFLSALRELQPDLCITAA 101 (334)
T ss_pred CHHHHHHHHhhCCCEEEhhH
Confidence 12334578999998863
No 342
>PRK07206 hypothetical protein; Provisional
Probab=45.57 E-value=71 Score=31.32 Aligned_cols=35 Identities=20% Similarity=-0.050 Sum_probs=25.7
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
||++++++.... ....+++++++.|+++.+++...
T Consensus 1 ~~k~~liv~~~~-------~~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 1 MMKKVVIVDPFS-------SGKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred CCCeEEEEcCCc-------hHHHHHHHHHHcCCeEEEEEcCC
Confidence 456788888631 23468899999999999888554
No 343
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=45.51 E-value=1.4e+02 Score=28.56 Aligned_cols=160 Identities=13% Similarity=0.055 Sum_probs=80.4
Q ss_pred CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCC-ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccC
Q 012132 270 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP-SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348 (470)
Q Consensus 270 ~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~-~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~ 348 (470)
++.++.+|- .- | ...++++.++ + +++++-+.+. ..+.-+++++++|++ ...
T Consensus 3 ~~rVgViG~-~~--G-~~h~~al~~~-----------~~~~eLvaV~d~------~~erA~~~A~~~gi~-------~y~ 54 (343)
T TIGR01761 3 VQSVVVCGT-RF--G-QFYLAAFAAA-----------PERFELAGILAQ------GSERSRALAHRLGVP-------LYC 54 (343)
T ss_pred CcEEEEEeH-HH--H-HHHHHHHHhC-----------CCCcEEEEEEcC------CHHHHHHHHHHhCCC-------ccC
Confidence 456777785 21 3 2355566543 5 6777766664 356677888888753 125
Q ss_pred CHHHHHHhcCEE--EEccCCccccc-chHHHHHHhcCCCEEecCCCC---cceeeec-CceeeeecCCCCChHHHHHHHH
Q 012132 349 TVAPYLAAIDVL--VQNSQAWGECF-GRITIEAMAFQLPVLGTAAGG---TTEIVVN-GTTGLLHPVGKEGITPLAKNIV 421 (470)
Q Consensus 349 ~~~~~~~~aDv~--v~pS~~~~E~~-g~~~lEAma~G~PvI~s~~~g---~~e~v~~-~~~G~l~~~~d~~~~~la~~i~ 421 (470)
++.++++..|+. +.|+.. .-+. .-...+|+..|+.|++=.-=. ..+++.- .++|..+-.+. -.....++.
T Consensus 55 ~~eell~d~Di~~V~ipt~~-P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v~~--f~p~~~~vr 131 (343)
T TIGR01761 55 EVEELPDDIDIACVVVRSAI-VGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLVNT--FYPHLPAVR 131 (343)
T ss_pred CHHHHhcCCCEEEEEeCCCC-CCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEEEe--cCHHHHHHH
Confidence 667777665554 444320 1112 245668999999999864111 1222110 12233322222 345556666
Q ss_pred HHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH
Q 012132 422 KLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 463 (470)
Q Consensus 422 ~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~ 463 (470)
+++++.......+... ++...|+.....+- .+++..++.
T Consensus 132 ~~i~~~~~i~~~~~~~--~i~~~~~~~v~~dl-ldil~~~lg 170 (343)
T TIGR01761 132 RFIEYARQLHHRRGPR--FVEATCGVQVLYST-LDILARALG 170 (343)
T ss_pred HHHHcchhHhhcCCCC--cceeecCCccccch-HHHHHHHhC
Confidence 6666553333322221 22233444433333 335555553
No 344
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=45.49 E-value=63 Score=29.96 Aligned_cols=32 Identities=9% Similarity=0.067 Sum_probs=23.5
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|||+++.. ...-..++..|.+.||+|+++...
T Consensus 1 m~I~IiG~-------G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGA-------GAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECC-------CHHHHHHHHHHHhCCCeEEEEECC
Confidence 56777753 245567788888899999999853
No 345
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.39 E-value=38 Score=31.19 Aligned_cols=162 Identities=19% Similarity=0.137 Sum_probs=86.9
Q ss_pred EEEEeec--ccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCC--------CcEE
Q 012132 273 FAIINSV--SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ--------DRVH 342 (470)
Q Consensus 273 i~~vGrl--~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~--------~~V~ 342 (470)
-+..|.= +.+.|+..++.++..+..... . +++.+.-.+.-+ ...+..+.++.|-. ++..
T Consensus 229 aLLPGsR~pea~~nl~~il~slcal~~~~a-------~--vvfw~ai~~~lp--l~~l~~l~e~~gWq~~ad~~~kdnc~ 297 (412)
T COG4370 229 ALLPGSRVPEAQTNLAVILGSLCALPAMFA-------L--VVFWAAIAPELP--LLLLWTLEERQGWQPLADRFGKDNCS 297 (412)
T ss_pred EecCCCCChHHHhhHHHHHHHHhhhHHHHH-------H--HHHHhccCcCCC--HHHHHHHHHhcCcchhhhhhccCceE
Confidence 3444543 347789999887766644221 1 122222211111 22233333332221 2333
Q ss_pred EecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC------cceeee--cCceeeeecCCCCChH
Q 012132 343 FVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG------TTEIVV--NGTTGLLHPVGKEGIT 414 (470)
Q Consensus 343 ~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g------~~e~v~--~~~~G~l~~~~d~~~~ 414 (470)
+.=......+.+-.+|+.+ ..-|...-.+...|+|||....-| ..|--. -|..=.++.+. .+
T Consensus 298 l~lsqqsfadiLH~adaal-------gmAGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~---aq 367 (412)
T COG4370 298 LWLSQQSFADILHAADAAL-------GMAGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRPE---AQ 367 (412)
T ss_pred EEEeHHHHHHHHHHHHHHH-------HhccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCCc---hh
Confidence 3333467788888888744 223556667899999999986443 221100 02222344443 34
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Q 012132 415 PLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 415 ~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 459 (470)
+-..+..+++.|++..+.+..++++++-+- -.++++.+...
T Consensus 368 ~a~~~~q~ll~dp~r~~air~nGqrRiGqa----Gaa~rIAe~l~ 408 (412)
T COG4370 368 AAAQAVQELLGDPQRLTAIRHNGQRRIGQA----GAARRIAEELG 408 (412)
T ss_pred hHHHHHHHHhcChHHHHHHHhcchhhccCc----chHHHHHHHHH
Confidence 444455559999999999888988877542 34455544443
No 346
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=45.24 E-value=44 Score=28.52 Aligned_cols=37 Identities=19% Similarity=0.123 Sum_probs=26.3
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
|||++..+.. .+.....++++.|.+.|++|.++....
T Consensus 2 k~Ill~vtGs---iaa~~~~~li~~L~~~g~~V~vv~T~~ 38 (182)
T PRK07313 2 KNILLAVSGS---IAAYKAADLTSQLTKRGYQVTVLMTKA 38 (182)
T ss_pred CEEEEEEeCh---HHHHHHHHHHHHHHHCCCEEEEEEChh
Confidence 5666665411 124668899999999999999887543
No 347
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=45.21 E-value=93 Score=27.72 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=43.4
Q ss_pred EEeecccCC-CHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHH
Q 012132 275 IINSVSRGK-GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPY 353 (470)
Q Consensus 275 ~vGrl~~~K-g~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~ 353 (470)
++--++|.| ..+..+++ +.+ ...-.+++|+...-..+...++-+.+++..++ -|.|.|..+.+.
T Consensus 10 h~~liDP~k~~~~~~~~~---~~~---------~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lP-vilfp~~~~~i~-- 74 (232)
T PRK04169 10 HVTLLDPDKPLPDEALEA---ICE---------SGTDAIIVGGSDGVTEENVDELVKAIKEYDLP-VILFPGNIEGIS-- 74 (232)
T ss_pred EEEEECCCCCCCHHHHHH---HHh---------cCCCEEEEcCCCccchHHHHHHHHHHhcCCCC-EEEeCCCccccC--
Confidence 344568877 44444433 222 33456777765322223455555666666665 567777654443
Q ss_pred HHhcCEEEEccC
Q 012132 354 LAAIDVLVQNSQ 365 (470)
Q Consensus 354 ~~~aDv~v~pS~ 365 (470)
..+|.+++||.
T Consensus 75 -~~aDa~l~~sv 85 (232)
T PRK04169 75 -PGADAYLFPSV 85 (232)
T ss_pred -cCCCEEEEEEE
Confidence 34999999986
No 348
>PRK09273 hypothetical protein; Provisional
Probab=45.17 E-value=30 Score=29.99 Aligned_cols=39 Identities=10% Similarity=0.083 Sum_probs=31.0
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|||.++.......--+.....|...|.+.||+|.=+...
T Consensus 1 mkiali~e~sqa~kn~~i~~~L~~~L~~~G~eV~D~G~~ 39 (211)
T PRK09273 1 MKIALINENSQAAKNAIIYEALKKVADPKGHEVFNYGMY 39 (211)
T ss_pred CeEEeecccchhhhhHHHHHHHHHHHHHCCCEEEEeCCC
Confidence 789999876654444678889999999999999877653
No 349
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=45.03 E-value=95 Score=28.75 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=45.1
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhC--CceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC---------
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--------- 141 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 141 (470)
++|||+++.+. ...-+..|..+..+. +++|.++....+. ......+.|++++....
T Consensus 88 ~~~ri~vl~Sg-----~gsnl~al~~~~~~~~~~~~i~~visn~~~--------~~~lA~~~gIp~~~~~~~~~~~~~~~ 154 (286)
T PRK06027 88 ERKRVVILVSK-----EDHCLGDLLWRWRSGELPVEIAAVISNHDD--------LRSLVERFGIPFHHVPVTKETKAEAE 154 (286)
T ss_pred cCcEEEEEEcC-----CCCCHHHHHHHHHcCCCCcEEEEEEEcChh--------HHHHHHHhCCCEEEeccCccccchhH
Confidence 46788888753 235577777776653 5788777655432 23335667887755221
Q ss_pred --hhhHHhhcCCcEEEEcc
Q 012132 142 --QETINTALKADLIVLNT 158 (470)
Q Consensus 142 --~~~~~~~~~~DiV~~~~ 158 (470)
.....+..++|+|++..
T Consensus 155 ~~~~~~l~~~~~Dlivlag 173 (286)
T PRK06027 155 ARLLELIDEYQPDLVVLAR 173 (286)
T ss_pred HHHHHHHHHhCCCEEEEec
Confidence 12335668999999874
No 350
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=44.51 E-value=1.5e+02 Score=28.35 Aligned_cols=84 Identities=14% Similarity=0.256 Sum_probs=56.9
Q ss_pred cCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc----CCHHHHHHh----cCEEEEccCCcccccchHHH
Q 012132 305 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT----LTVAPYLAA----IDVLVQNSQAWGECFGRITI 376 (470)
Q Consensus 305 ~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~----~~~~~~~~~----aDv~v~pS~~~~E~~g~~~l 376 (470)
++|+-.+++.|-|-+.-.|-....-..+.+.++. |+.++-.. .-+..+++. .|.|+.|.+- .--.|....
T Consensus 133 ~nPdk~VVF~avGFETTaP~~A~~i~~a~~~~~~-Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHV-s~I~G~~~y 210 (369)
T TIGR00075 133 ENPDRKVVFFAIGFETTAPTTASTLLSAKAEDIN-NFFFLSAHRLVPPAVEALLENPAVQIDAFLAPGHV-STIIGAKPY 210 (369)
T ss_pred HCCCCeEEEEecCchhccHHHHHHHHHHHHcCCC-cEEEEEeccccHHHHHHHHcCCCCCccEEEecCEE-EEEeccchh
Confidence 3588899999988766556666666667777774 66666542 344555543 4889999873 444566666
Q ss_pred HHHh--cCCCEEecCC
Q 012132 377 EAMA--FQLPVLGTAA 390 (470)
Q Consensus 377 EAma--~G~PvI~s~~ 390 (470)
+-++ +|+|++++..
T Consensus 211 ~~l~~~y~~P~VVaGF 226 (369)
T TIGR00075 211 APIAEKYKIPIVIAGF 226 (369)
T ss_pred HHHHHHcCCCeEEecc
Confidence 6554 7899999843
No 351
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=44.37 E-value=66 Score=29.14 Aligned_cols=81 Identities=21% Similarity=0.180 Sum_probs=43.4
Q ss_pred cCCCch-hHHHHHHHHHHHhCCceEEEEecCCCCCchhH-----HHhhhhhhhhcceeeEecCC-------------hhh
Q 012132 84 LSLSGG-PLLLMELAFLLRGVGTKVNWITIQKPSEEDEV-----IYSLEHKMWDRGVQVISAKG-------------QET 144 (470)
Q Consensus 84 ~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-------------~~~ 144 (470)
-+||-| +..+..|++.|.++|+.|-|++.++..+.... .-.+.......++-+-+... .-.
T Consensus 36 G~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls~~t~~~v~ 115 (266)
T PF03308_consen 36 GPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLSRATRDAVR 115 (266)
T ss_dssp E-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCccHhHHHHHH
Confidence 345444 79999999999999999999995544322110 11122222233443322211 123
Q ss_pred HHhhcCCcEEEEcccchhhh
Q 012132 145 INTALKADLIVLNTAVAGKW 164 (470)
Q Consensus 145 ~~~~~~~DiV~~~~~~~~~~ 164 (470)
+.....+|+|++.+.-.+.-
T Consensus 116 ll~aaG~D~IiiETVGvGQs 135 (266)
T PF03308_consen 116 LLDAAGFDVIIIETVGVGQS 135 (266)
T ss_dssp HHHHTT-SEEEEEEESSSTH
T ss_pred HHHHcCCCEEEEeCCCCCcc
Confidence 44568899999998765553
No 352
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=44.36 E-value=1.7e+02 Score=27.99 Aligned_cols=69 Identities=20% Similarity=0.162 Sum_probs=38.8
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCC-------CchhHHHhhhhhhhhcceeeEecCChhh
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS-------EEDEVIYSLEHKMWDRGVQVISAKGQET 144 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (470)
|++|||++-.+ ||....+ -|..|.++||||.=++..... ...+............|++++.......
T Consensus 1 ~~~~kV~v~mS----GGVDSSV--aA~lLk~QGyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~ 74 (356)
T COG0482 1 MKKKKVLVGMS----GGVDSSV--AAYLLKEQGYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEKE 74 (356)
T ss_pred CCCcEEEEEcc----CCHHHHH--HHHHHHHcCCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchHHH
Confidence 46788887664 4543222 255678889999888732221 1112222344455667888876655443
Q ss_pred HH
Q 012132 145 IN 146 (470)
Q Consensus 145 ~~ 146 (470)
+.
T Consensus 75 y~ 76 (356)
T COG0482 75 FW 76 (356)
T ss_pred HH
Confidence 33
No 353
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=44.35 E-value=59 Score=23.62 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=34.4
Q ss_pred EEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccC
Q 012132 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 365 (470)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~ 365 (470)
++++|.|....-=....+++.++++|++-.+.... ..+...+...+|+++.+..
T Consensus 3 lvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~-~~~~~~~~~~~D~il~~~~ 56 (90)
T PF02302_consen 3 LVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGS-ILEVEEIADDADLILLTPQ 56 (90)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEE-TTTHHHHHTT-SEEEEEES
T ss_pred EEECCChHHHHHHHHHHHHHHHHhccCceEEEEec-ccccccccCCCcEEEEcCc
Confidence 56677774322112378889999998754333333 5566777788999998765
No 354
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=43.87 E-value=2.4e+02 Score=26.74 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=29.2
Q ss_pred EEEEeeccCCCch--hHHHHHHHHHHHhCCceEEEEecCCCC
Q 012132 77 VLLVSHELSLSGG--PLLLMELAFLLRGVGTKVNWITIQKPS 116 (470)
Q Consensus 77 Il~v~~~~~~~G~--~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (470)
|..|.+ ...||. .-.+..|++.|.++|+.|.|++..++.
T Consensus 37 VIsVGN-ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~ 77 (326)
T PF02606_consen 37 VISVGN-LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGR 77 (326)
T ss_pred EEEEcc-cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 555554 455554 478999999999999999999955443
No 355
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=43.58 E-value=1e+02 Score=31.40 Aligned_cols=36 Identities=22% Similarity=0.023 Sum_probs=27.3
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
.+|++++...+.||-.. -+|+.|...|++|.|+...
T Consensus 136 ~~VlVlcGpGNNGGDGL---VaAR~L~~~G~~V~V~~~~ 171 (544)
T PLN02918 136 SRVLAICGPGNNGGDGL---VAARHLHHFGYKPFVCYPK 171 (544)
T ss_pred CEEEEEECCCcCHHHHH---HHHHHHHHCCCceEEEEcC
Confidence 57999998777666443 3567788899999999844
No 356
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=43.37 E-value=38 Score=28.12 Aligned_cols=40 Identities=28% Similarity=0.283 Sum_probs=26.6
Q ss_pred HHHHHHh-cCEEEEccCC--ccc--ccchHHHHHHhcCCCEEecC
Q 012132 350 VAPYLAA-IDVLVQNSQA--WGE--CFGRITIEAMAFQLPVLGTA 389 (470)
Q Consensus 350 ~~~~~~~-aDv~v~pS~~--~~E--~~g~~~lEAma~G~PvI~s~ 389 (470)
+...+.. +|++|+.-.. ..| ||--.+.+|++.|+||++.-
T Consensus 86 l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V 130 (159)
T PF10649_consen 86 LRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAV 130 (159)
T ss_pred HHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEE
Confidence 3334444 8999976432 123 44456779999999999874
No 357
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=43.06 E-value=48 Score=29.75 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=26.7
Q ss_pred cEEEEEeeccCCCch--hHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGG--PLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~--~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
||++.+.. ..||. ...+-+|+..|++.|..|.++-..
T Consensus 1 M~~iai~s--~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 1 MKVIAIVS--PKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred CcEEEEec--CCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 45555543 23444 578999999999999999998654
No 358
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=43.01 E-value=35 Score=29.22 Aligned_cols=100 Identities=15% Similarity=0.218 Sum_probs=44.6
Q ss_pred CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--
Q 012132 270 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-- 347 (470)
Q Consensus 270 ~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~-- 347 (470)
..+.++..+++.-.-...+++.+ .+ ++|+.++++...... ..+..++.... ...+.++...
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l-------~~---~~p~~~illT~~T~t----g~~~~~~~~~~---~v~~~~~P~D~~ 84 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRL-------RK---QRPDLRILLTTTTPT----GREMARKLLPD---RVDVQYLPLDFP 84 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHH-------TT------TS-EEEEES-CC----HHHHHHGG-GG---G-SEEE---SSH
T ss_pred CcEEEEECCHHHHHHHHHHHHHH-------HH---hCCCCeEEEEecCCc----hHHHHHHhCCC---CeEEEEeCccCH
Confidence 56677766655433333333333 22 458999999886432 22333332221 1235555532
Q ss_pred CCHHHHHHhc--CEEEEccCCcccccchHHHHHHhcCCCEEecC
Q 012132 348 LTVAPYLAAI--DVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389 (470)
Q Consensus 348 ~~~~~~~~~a--Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~ 389 (470)
..+..+++.. |++|+-- .|-+|+-+.+|-..|+|++.-+
T Consensus 85 ~~~~rfl~~~~P~~~i~~E---tElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 85 WAVRRFLDHWRPDLLIWVE---TELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp HHHHHHHHHH--SEEEEES-------HHHHHH-----S-EEEEE
T ss_pred HHHHHHHHHhCCCEEEEEc---cccCHHHHHHHhhcCCCEEEEe
Confidence 3355666655 8887766 6999999999999999999765
No 359
>PRK09004 FMN-binding protein MioC; Provisional
Probab=42.95 E-value=48 Score=27.03 Aligned_cols=34 Identities=26% Similarity=0.205 Sum_probs=25.5
Q ss_pred EEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEe
Q 012132 76 LVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 76 kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
||+++. .+-+|. +..+..+++.+.+.|++|.++.
T Consensus 3 ~i~I~y--gS~tGnae~~A~~l~~~~~~~g~~~~~~~ 37 (146)
T PRK09004 3 DITLIS--GSTLGGAEYVADHLAEKLEEAGFSTETLH 37 (146)
T ss_pred eEEEEE--EcCchHHHHHHHHHHHHHHHcCCceEEec
Confidence 566653 223454 8999999999999999998863
No 360
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=42.93 E-value=51 Score=26.54 Aligned_cols=34 Identities=15% Similarity=0.074 Sum_probs=25.3
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEE
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNW 109 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v 109 (470)
|||+++-.. ..|..++.+..+++.|...|++|.+
T Consensus 1 M~i~IiY~S-~tGnTe~iA~~ia~~l~~~g~~v~~ 34 (140)
T TIGR01754 1 MRILLAYLS-LSGNTEEVAFMIQDYLQKDGHEVDI 34 (140)
T ss_pred CeEEEEEEC-CCChHHHHHHHHHHHHhhCCeeEEe
Confidence 577776643 2244488999999999999999874
No 361
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=42.80 E-value=47 Score=29.90 Aligned_cols=38 Identities=16% Similarity=0.145 Sum_probs=27.6
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (470)
||||+...+--- +.-+..|+++|.+.| +|.|+++...+
T Consensus 1 M~ILltNDDGi~---a~Gi~aL~~~l~~~g-~V~VvAP~~~~ 38 (244)
T TIGR00087 1 MKILLTNDDGIH---SPGIRALYQALKELG-EVTVVAPARQR 38 (244)
T ss_pred CeEEEECCCCCC---CHhHHHHHHHHHhCC-CEEEEeCCCCc
Confidence 689877764211 245888999999988 99999866543
No 362
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=42.76 E-value=1.5e+02 Score=27.66 Aligned_cols=74 Identities=14% Similarity=0.087 Sum_probs=44.6
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
...||+++... .+.+..++..|...|.+|.++++..-........ ......|..+.......... ...|
T Consensus 151 ~gl~i~~vGd~------~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~---~~~~~~g~~~~~~~d~~~a~--~~aD 219 (304)
T PRK00779 151 KGLKVAWVGDG------NNVANSLLLAAALLGFDLRVATPKGYEPDPEIVE---KIAKETGASIEVTHDPKEAV--KGAD 219 (304)
T ss_pred CCcEEEEEeCC------CccHHHHHHHHHHcCCEEEEECCcccCCCHHHHH---HHHHHcCCeEEEEcCHHHHh--CCCC
Confidence 45789988751 2578999999999999999998754333222211 11233454443333332222 3678
Q ss_pred EEEEc
Q 012132 153 LIVLN 157 (470)
Q Consensus 153 iV~~~ 157 (470)
+|+.-
T Consensus 220 vvy~~ 224 (304)
T PRK00779 220 VVYTD 224 (304)
T ss_pred EEEec
Confidence 88874
No 363
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=42.73 E-value=48 Score=33.01 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=26.3
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
++|||++.. + .....++++++++|++|.++...
T Consensus 2 ~k~iLi~g~------g-~~a~~i~~aa~~~G~~vv~~~~~ 34 (451)
T PRK08591 2 FDKILIANR------G-EIALRIIRACKELGIKTVAVHST 34 (451)
T ss_pred cceEEEECC------C-HHHHHHHHHHHHcCCeEEEEcCh
Confidence 578998852 2 45788999999999999998754
No 364
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=42.58 E-value=1.6e+02 Score=26.10 Aligned_cols=91 Identities=10% Similarity=-0.038 Sum_probs=0.0
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhC-CceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCC
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (470)
|..||.|+- ...-|.+.++.-+..+.+.+ +.+|.++++...-............+.. ++|
T Consensus 1 mvvKiGiiK--lGNig~s~~idl~lDErAdRedI~vrv~gsGaKm~pe~~~~~~~~~~~~-----------------~~p 61 (277)
T PRK00994 1 MVVKIGIIK--LGNIGMSPVIDLLLDERADREDIDVRVVGSGAKMGPEEVEEVVKKMLEE-----------------WKP 61 (277)
T ss_pred CeEEEEEEE--ecccchHHHHHHHHHhhhcccCceEEEeccCCCCCHHHHHHHHHHHHHh-----------------hCC
Q ss_pred cEEEEcccchhhhHHHHhhhcCCccccceee
Q 012132 152 DLIVLNTAVAGKWLDAVLKEDVPRVLPNVLW 182 (470)
Q Consensus 152 DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (470)
|+++.-+|..........+..+.....|.+.
T Consensus 62 Df~i~isPN~a~PGP~~ARE~l~~~~iP~Iv 92 (277)
T PRK00994 62 DFVIVISPNPAAPGPKKAREILKAAGIPCIV 92 (277)
T ss_pred CEEEEECCCCCCCCchHHHHHHHhcCCCEEE
No 365
>PRK05569 flavodoxin; Provisional
Probab=42.54 E-value=60 Score=26.08 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=27.1
Q ss_pred cEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEec
Q 012132 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
+||+++-.+ +.|. +..+..+++.+.+.|++|.+...
T Consensus 2 ~ki~iiY~S--~tGnT~~iA~~i~~~~~~~g~~v~~~~~ 38 (141)
T PRK05569 2 KKVSIIYWS--CGGNVEVLANTIADGAKEAGAEVTIKHV 38 (141)
T ss_pred CeEEEEEEC--CCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 467666643 3454 78999999999999999888753
No 366
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=42.52 E-value=2.4e+02 Score=24.79 Aligned_cols=68 Identities=10% Similarity=0.093 Sum_probs=42.3
Q ss_pred cCEEEEccCCcccccchHHHHHHh-----cCCCEEec--CCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCH
Q 012132 357 IDVLVQNSQAWGECFGRITIEAMA-----FQLPVLGT--AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 427 (470)
Q Consensus 357 aDv~v~pS~~~~E~~g~~~lEAma-----~G~PvI~s--~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 427 (470)
.|+.++--. -.++-|+.++...- +.+-+|+. |..-+.+.+..|...+++.|-. .+-|-+++.+.....
T Consensus 47 pDLILLDiY-mPd~~Gi~lL~~ir~~~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~--~eRl~~aL~~y~~~r 121 (224)
T COG4565 47 PDLILLDIY-MPDGNGIELLPELRSQHYPVDVIVITAASDMETIKEALRYGVVDYLIKPFT--FERLQQALTRYRQKR 121 (224)
T ss_pred CCEEEEeec-cCCCccHHHHHHHHhcCCCCCEEEEeccchHHHHHHHHhcCchhheeccee--HHHHHHHHHHHHHHH
Confidence 355544322 16677777776655 33333432 2233566666677788888877 888998888876543
No 367
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=42.52 E-value=33 Score=31.35 Aligned_cols=40 Identities=18% Similarity=-0.015 Sum_probs=31.0
Q ss_pred cEEEEEeecc-C--CCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 75 KLVLLVSHEL-S--LSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 75 ~kIl~v~~~~-~--~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
|+|++++... | .||.+.-+.+|++.|.+.-+.|..++...
T Consensus 1 ~~V~ll~EGtYPyv~GGVSsW~~~LI~glpe~~F~v~~i~a~~ 43 (268)
T PF11997_consen 1 MDVCLLTEGTYPYVRGGVSSWVHQLIRGLPEHEFHVYAIGANP 43 (268)
T ss_pred CeEEEEecCcCCCCCCchhHHHHHHHhcCCCceEEEEEEeCCc
Confidence 6899998763 3 37779999999999998766766666543
No 368
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=42.45 E-value=1.6e+02 Score=22.92 Aligned_cols=77 Identities=13% Similarity=0.112 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhc-CEEEE
Q 012132 284 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI-DVLVQ 362 (470)
Q Consensus 284 g~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~a-Dv~v~ 362 (470)
|....++++++ ..++|+|+....+. ......+..+++..+++ +.+.+..+++-...... .+.++
T Consensus 30 G~~~v~kaikk------------gka~LVilA~D~s~-~~~~~~i~~lc~~~~Ip--~~~~~sk~eLG~a~Gk~~~~svv 94 (117)
T TIGR03677 30 GTNEVTKAVER------------GIAKLVVIAEDVEP-PEIVAHLPALCEEKGIP--YVYVKKKEDLGAAAGLEVGAASA 94 (117)
T ss_pred cHHHHHHHHHc------------CCccEEEEeCCCCc-HHHHHHHHHHHHHcCCC--EEEeCCHHHHHHHhCCCCCeEEE
Confidence 67888888752 56788887765321 02468899999999887 67777777887777652 34444
Q ss_pred ccCCcccccchHHHH
Q 012132 363 NSQAWGECFGRITIE 377 (470)
Q Consensus 363 pS~~~~E~~g~~~lE 377 (470)
.-. .+|+.-.++.
T Consensus 95 aI~--d~g~a~~~~~ 107 (117)
T TIGR03677 95 AIV--DEGKAEELLK 107 (117)
T ss_pred EEE--chhhhHHHHH
Confidence 333 4566555443
No 369
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=42.36 E-value=1.9e+02 Score=26.67 Aligned_cols=89 Identities=15% Similarity=0.044 Sum_probs=50.4
Q ss_pred HHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCC-Ccceee----e---------------c---C--ceeee
Q 012132 351 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG-GTTEIV----V---------------N---G--TTGLL 405 (470)
Q Consensus 351 ~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~-g~~e~v----~---------------~---~--~~G~l 405 (470)
...++.||++|..... .|++--.+++... +.++|....+ +..... . + + .--+.
T Consensus 47 ~~~l~~Adliv~~G~~-le~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~dPHiW 124 (286)
T cd01019 47 ARKLQEADLVVWIGPD-LEAFLDKVLQGRK-KGKVLTLAKLIDLKTLEDGASHGDHEHDHEHAHGEHDGHEEGGLDPHLW 124 (286)
T ss_pred HHHHHhCCEEEEeCCC-chHHHHHHHHhcC-cCceEecccCCcccccccccccccccccccccccccCCCCCCCCCCccC
Confidence 4557889999987763 6776666766542 3455543211 110000 0 0 0 11233
Q ss_pred ecCCCCChHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHH
Q 012132 406 HPVGKEGITPLAKNIVKLAT--HVERRLTMGKRGYERVKE 443 (470)
Q Consensus 406 ~~~~d~~~~~la~~i~~ll~--~~~~~~~~~~~a~~~~~~ 443 (470)
.++.+ ...++++|.+-|. +|+..+...+|+.++..+
T Consensus 125 ldp~n--~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~ 162 (286)
T cd01019 125 LSPEN--AAEVAQAVAEKLSALDPDNAATYAANLEAFNAR 162 (286)
T ss_pred CCHHH--HHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHH
Confidence 44444 6677777777766 787777777777776654
No 370
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=42.29 E-value=1.3e+02 Score=26.86 Aligned_cols=80 Identities=8% Similarity=0.033 Sum_probs=54.1
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc-----CC---HHHHHHhcCEEEEccCCcccccchHHHHH
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-----LT---VAPYLAAIDVLVQNSQAWGECFGRITIEA 378 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~-----~~---~~~~~~~aDv~v~pS~~~~E~~g~~~lEA 378 (470)
+..++++-|+......+.-..+++.+.+.|+++.-+++.+. +. ..+++..-++.|.+|. -+++.++.-|
T Consensus 81 k~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i~~~~~~iIVTq~---fHm~RA~~ia 157 (239)
T PRK10834 81 KVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQR---FHCERALFIA 157 (239)
T ss_pred CCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHHhCCCCEEEECCH---HHHHHHHHHH
Confidence 55578888875333334566788889999998776665532 22 2344555557777774 5678888888
Q ss_pred HhcCCCEEecC
Q 012132 379 MAFQLPVLGTA 389 (470)
Q Consensus 379 ma~G~PvI~s~ 389 (470)
-..|.-+++..
T Consensus 158 ~~~Gi~~~~~~ 168 (239)
T PRK10834 158 LHMGIQAQCYA 168 (239)
T ss_pred HHcCCceEEEe
Confidence 99999987764
No 371
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=42.06 E-value=93 Score=31.12 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=29.9
Q ss_pred ccccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecCC
Q 012132 72 MKSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
..++||++... ||. .....++++.|.+.|++|.++....
T Consensus 68 l~~k~IllgVt----GsIAayka~~lvr~L~k~G~~V~VvmT~s 107 (475)
T PRK13982 68 LASKRVTLIIG----GGIAAYKALDLIRRLKERGAHVRCVLTKA 107 (475)
T ss_pred cCCCEEEEEEc----cHHHHHHHHHHHHHHHhCcCEEEEEECcC
Confidence 45678877764 333 4678999999999999999887543
No 372
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=42.05 E-value=42 Score=30.80 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=34.9
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCcEE
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLI 154 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV 154 (470)
||||++. +....-..|.+.|. .+++|.-++... +.+........+.+..+||+|
T Consensus 1 M~iLi~G------~~GqLG~~L~~~l~-~~~~v~a~~~~~-------------------~Ditd~~~v~~~i~~~~PDvV 54 (281)
T COG1091 1 MKILITG------ANGQLGTELRRALP-GEFEVIATDRAE-------------------LDITDPDAVLEVIRETRPDVV 54 (281)
T ss_pred CcEEEEc------CCChHHHHHHHHhC-CCceEEeccCcc-------------------ccccChHHHHHHHHhhCCCEE
Confidence 4566654 33477788888887 567887765332 122222234556667799998
Q ss_pred EEc
Q 012132 155 VLN 157 (470)
Q Consensus 155 ~~~ 157 (470)
+-.
T Consensus 55 In~ 57 (281)
T COG1091 55 INA 57 (281)
T ss_pred EEC
Confidence 754
No 373
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=41.97 E-value=1.3e+02 Score=28.02 Aligned_cols=89 Identities=16% Similarity=0.062 Sum_probs=55.8
Q ss_pred HHHHhcCEEEEccCCcccccchHHHHHHhcCC-CEEe-cCCCCcceeee---c--CceeeeecCCCCChHHHHHHHHHHH
Q 012132 352 PYLAAIDVLVQNSQAWGECFGRITIEAMAFQL-PVLG-TAAGGTTEIVV---N--GTTGLLHPVGKEGITPLAKNIVKLA 424 (470)
Q Consensus 352 ~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~-PvI~-s~~~g~~e~v~---~--~~~G~l~~~~d~~~~~la~~i~~ll 424 (470)
.-++.||+++..... .|+|-..+++.+.... ++|. ++.-.....-. + .......+|.+ ...+++.|.+-+
T Consensus 77 ~~i~~ADliv~nG~~-le~w~~k~~~~~~~~~~~~i~~s~~i~~~~~~~~~~~g~~dpH~Wldp~n--a~~~v~~I~~~L 153 (303)
T COG0803 77 AKLRKADLIVYNGLG-LEPWLEKLLESADKKKVLVIEVSDGIELLPLPGEEEEGVNDPHVWLDPKN--AKIYAENIADAL 153 (303)
T ss_pred HHHHhCCEEEEcCCC-hHHHHHHHHHhcccCCceEEEccCCccccCCCCccccCCCCCCeecCHHH--HHHHHHHHHHHH
Confidence 457889999988774 7777777777665543 2332 22111111111 1 12345556555 777777777777
Q ss_pred h--CHHHHHHHHHHHHHHHHH
Q 012132 425 T--HVERRLTMGKRGYERVKE 443 (470)
Q Consensus 425 ~--~~~~~~~~~~~a~~~~~~ 443 (470)
. ||+......+|+.++..+
T Consensus 154 ~~~dP~~~~~y~~N~~~y~~k 174 (303)
T COG0803 154 VELDPENKETYEKNAEAYLKK 174 (303)
T ss_pred HHhCcccHHHHHHHHHHHHHH
Confidence 6 888888888888887765
No 374
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=41.96 E-value=2.7e+02 Score=25.33 Aligned_cols=106 Identities=12% Similarity=-0.022 Sum_probs=60.2
Q ss_pred EEeecccCCCHHHHHHHHHHHHHHHHhhccc---CCceE-EEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc-cCC
Q 012132 275 IINSVSRGKGQDLFLHSFYESLELIKEKKLE---VPSVH-AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-TLT 349 (470)
Q Consensus 275 ~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~---~~~~~-l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~-~~~ 349 (470)
+.| ...-...+.+++.++++.+.-.+.... .|.-. .-+-|.| ......+++.++++|++ +.-..+ ..+
T Consensus 29 IAG-pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g----~~gl~~l~~~~~~~Gl~--~~t~~~d~~~ 101 (260)
T TIGR01361 29 IAG-PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGLG----EEGLKLLRRAADEHGLP--VVTEVMDPRD 101 (260)
T ss_pred EEe-CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCCccccccH----HHHHHHHHHHHHHhCCC--EEEeeCChhh
Confidence 444 455567888888888775422110000 00000 0112222 13567788888999875 222222 245
Q ss_pred HHHHHHhcCEEEEccCCcccccchHHHHHH-hcCCCEEecCC
Q 012132 350 VAPYLAAIDVLVQNSQAWGECFGRITIEAM-AFQLPVLGTAA 390 (470)
Q Consensus 350 ~~~~~~~aDv~v~pS~~~~E~~g~~~lEAm-a~G~PvI~s~~ 390 (470)
+..+...+|++-.+|. +..-..++++. ..|+||+.+.-
T Consensus 102 ~~~l~~~~d~lkI~s~---~~~n~~LL~~~a~~gkPVilk~G 140 (260)
T TIGR01361 102 VEIVAEYADILQIGAR---NMQNFELLKEVGKQGKPVLLKRG 140 (260)
T ss_pred HHHHHhhCCEEEECcc---cccCHHHHHHHhcCCCcEEEeCC
Confidence 5555566899999996 55555566554 57999998863
No 375
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=41.83 E-value=42 Score=31.81 Aligned_cols=43 Identities=21% Similarity=-0.029 Sum_probs=30.8
Q ss_pred ccccEEEEEeeccCC-Cchh-HHHHHHHHHHHhCCceEEEEecCC
Q 012132 72 MKSKLVLLVSHELSL-SGGP-LLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~-~G~~-~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
|+++||+++....+. .-.. ......+++|.+.||+|..+....
T Consensus 1 m~~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~ 45 (333)
T PRK01966 1 MMKMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGITK 45 (333)
T ss_pred CCCcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEEEECC
Confidence 568899999844332 1112 567789999999999999887443
No 376
>PRK07308 flavodoxin; Validated
Probab=41.77 E-value=51 Score=26.74 Aligned_cols=26 Identities=19% Similarity=0.059 Sum_probs=21.4
Q ss_pred CchhHHHHHHHHHHHhCCceEEEEec
Q 012132 87 SGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 87 ~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
|..+..+..+++.|.+.|++|.+.-.
T Consensus 13 GnTe~iA~~ia~~l~~~g~~~~~~~~ 38 (146)
T PRK07308 13 GNTEEIADIVADKLRELGHDVDVDEC 38 (146)
T ss_pred chHHHHHHHHHHHHHhCCCceEEEec
Confidence 44489999999999999999888643
No 377
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=41.73 E-value=98 Score=30.58 Aligned_cols=49 Identities=24% Similarity=0.311 Sum_probs=36.3
Q ss_pred cCCCCcEEEecccCCHHHHHHhcC-EEEEccCCcccccchHHHHHHhcCCCEEecCCC
Q 012132 335 KKIQDRVHFVNKTLTVAPYLAAID-VLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG 391 (470)
Q Consensus 335 ~~l~~~V~~~g~~~~~~~~~~~aD-v~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~ 391 (470)
+..+.+|+++...-+...+++..| ++..+|. .=.||+.||+|+++...+
T Consensus 204 ~~~~~r~~ll~edfnpisll~~~dkvy~~ts~--------mgfeall~~~~~~~fg~p 253 (671)
T COG3563 204 LSQQHRVHLLAEDFNPISLLQNVDKVYCVTSQ--------MGFEALLCGKPLTTFGLP 253 (671)
T ss_pred hccCceEEEecccCChHHHHHhcceeEEeecc--------ccHHHHhcCCceeeecch
Confidence 344568998887656677888887 5666665 236999999999998543
No 378
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=41.72 E-value=1.4e+02 Score=26.55 Aligned_cols=75 Identities=13% Similarity=0.186 Sum_probs=42.5
Q ss_pred EEeecccCC--CHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHH-hcCCCCcEEEecccCCHH
Q 012132 275 IINSVSRGK--GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM-QKKIQDRVHFVNKTLTVA 351 (470)
Q Consensus 275 ~vGrl~~~K--g~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~-~~~l~~~V~~~g~~~~~~ 351 (470)
++--++|.| ..+.+++++.+ ...-.+++|+...-..+....+-+.++ +.+++ -+.|.|..+.+.
T Consensus 18 H~tliDP~k~~~~~ei~~~~~~------------~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lP-vilfP~~~~~is 84 (240)
T COG1646 18 HLTLIDPDKTEEADEIAEAAAE------------AGTDAIMIGGSDGVTEENVDNVVEAIKERTDLP-VILFPGSPSGIS 84 (240)
T ss_pred EEEEeCcccccccHHHHHHHHH------------cCCCEEEECCcccccHHHHHHHHHHHHhhcCCC-EEEecCChhccC
Confidence 334567877 33444444432 234567788654332223344444444 66775 677777654444
Q ss_pred HHHHhcCEEEEccC
Q 012132 352 PYLAAIDVLVQNSQ 365 (470)
Q Consensus 352 ~~~~~aDv~v~pS~ 365 (470)
. .+|.+++||.
T Consensus 85 ~---~aDavff~sv 95 (240)
T COG1646 85 P---YADAVFFPSV 95 (240)
T ss_pred c---cCCeEEEEEE
Confidence 3 8899998876
No 379
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=41.31 E-value=33 Score=29.85 Aligned_cols=33 Identities=24% Similarity=0.069 Sum_probs=26.1
Q ss_pred EeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 80 VSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 80 v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
+.+.+|-.|-..+..+|++.|.+.+|+|..++.
T Consensus 5 IlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 5 ILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred EEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 333455566689999999999999999988764
No 380
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=41.18 E-value=88 Score=27.63 Aligned_cols=42 Identities=24% Similarity=0.095 Sum_probs=30.2
Q ss_pred cccccEEEEEeeccCCCchh-HHHHHHHHHHHhCCceEEEEec
Q 012132 71 FMKSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~-~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
..++|||+.++.+...+--. ..+..+++.+.+.|.+|.++..
T Consensus 23 ~~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl 65 (219)
T TIGR02690 23 KPHIPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDP 65 (219)
T ss_pred CCCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCc
Confidence 34568999999887776554 4555556666667999999874
No 381
>PRK01355 azoreductase; Reviewed
Probab=41.11 E-value=63 Score=27.95 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=29.5
Q ss_pred ccEEEEEeeccC--CCch-hHHHHHHHHHHHhC--CceEEEEecC
Q 012132 74 SKLVLLVSHELS--LSGG-PLLLMELAFLLRGV--GTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~--~~G~-~~~~~~l~~~L~~~--G~~V~v~~~~ 113 (470)
|||||+|..+.. .+|. ...+..+++.+.+. |++|.++-..
T Consensus 1 M~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~ 45 (199)
T PRK01355 1 MSKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLN 45 (199)
T ss_pred CCeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 478999987765 3443 57778888888874 5899888754
No 382
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=41.00 E-value=59 Score=31.38 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=27.3
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
.+|+|++. ||....-..+++.|.++||+|+.+..
T Consensus 20 ~~~~IlVt------GgtGfIG~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 20 EKLRICIT------GAGGFIASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCEEEEE------CCccHHHHHHHHHHHhCCCEEEEEEe
Confidence 45788876 34457888999999999999999874
No 383
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=40.67 E-value=80 Score=22.54 Aligned_cols=37 Identities=22% Similarity=0.129 Sum_probs=27.8
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
.+-++++.+.+. .-......+++.|.+.|+.|..+-.
T Consensus 15 ~k~~v~i~HG~~--eh~~ry~~~a~~L~~~G~~V~~~D~ 51 (79)
T PF12146_consen 15 PKAVVVIVHGFG--EHSGRYAHLAEFLAEQGYAVFAYDH 51 (79)
T ss_pred CCEEEEEeCCcH--HHHHHHHHHHHHHHhCCCEEEEECC
Confidence 356777777652 2235788999999999999998763
No 384
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=40.62 E-value=71 Score=24.82 Aligned_cols=38 Identities=18% Similarity=-0.007 Sum_probs=25.5
Q ss_pred ccEEEEEeeccCCCch-hHH--HHHHHHHHHhCCceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGG-PLL--LMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~-~~~--~~~l~~~L~~~G~~V~v~~~~ 113 (470)
+|||+.++. .+.|. ..+ ...|.++-+++||++.|=+..
T Consensus 2 ~mkivaVta--cp~GiAht~lAAeaL~kAA~~~G~~i~VE~qg 42 (114)
T PRK10427 2 MAYLVAVTA--CVSGVAHTYMAAERLEKLCQLEKWGVKIETQG 42 (114)
T ss_pred CceEEEEee--CCCcHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 478888874 33444 333 356667777889999998844
No 385
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=40.59 E-value=71 Score=26.00 Aligned_cols=38 Identities=29% Similarity=0.211 Sum_probs=25.0
Q ss_pred EEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 77 Il~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
+.-|.+..+..|....+.+||..|++.|+.|.++-...
T Consensus 2 ~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~ 39 (157)
T PF13614_consen 2 VIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDF 39 (157)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--S
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 33333333345557899999999999999977776443
No 386
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=40.54 E-value=41 Score=32.18 Aligned_cols=58 Identities=12% Similarity=-0.054 Sum_probs=37.2
Q ss_pred HHHHHHhcCCCEEecC--CCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHH
Q 012132 374 ITIEAMAFQLPVLGTA--AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTM 433 (470)
Q Consensus 374 ~~lEAma~G~PvI~s~--~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~ 433 (470)
++.+|+..|+..|.-. .+...+++.. +.++.-.+=.++++|++.|..+.+|++++.+.
T Consensus 246 K~~~al~~g~VPI~~G~~~~~~~~~~P~--~SfI~~~df~s~~~La~yl~~l~~n~~~Y~~y 305 (349)
T PF00852_consen 246 KFWNALLAGTVPIYWGPPRPNYEEFAPP--NSFIHVDDFKSPKELADYLKYLDKNDELYNKY 305 (349)
T ss_dssp HHHHHHHTTSEEEEES---TTHHHHS-G--GGSEEGGGSSSHHHHHHHHHHHHT-HHHHH--
T ss_pred HHHHHHHCCeEEEEECCEecccccCCCC--CCccchhcCCCHHHHHHHHHHHhcCHHHHhhh
Confidence 5779999997766665 4566667654 33443222123999999999999998876654
No 387
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.37 E-value=1.1e+02 Score=27.03 Aligned_cols=36 Identities=17% Similarity=0.117 Sum_probs=24.8
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|++|+|+++.. ....-..+++.|.++||+|.+++..
T Consensus 4 ~~~~~vlItGa------sg~iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 4 LMGRVALVTGA------ARGLGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCCEEEEeCC------CchHHHHHHHHHHHCCCeEEEEeCC
Confidence 34467777552 2346678888999999998776644
No 388
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=40.00 E-value=44 Score=28.67 Aligned_cols=33 Identities=15% Similarity=0.357 Sum_probs=27.5
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
||||+|-+.- .+..++++.|.+.|+++.++...
T Consensus 2 ~~iliid~~d------sf~~~i~~~l~~~g~~~~v~~~~ 34 (190)
T PRK06895 2 TKLLIINNHD------SFTFNLVDLIRKLGVPMQVVNVE 34 (190)
T ss_pred cEEEEEeCCC------chHHHHHHHHHHcCCcEEEEECC
Confidence 7899998754 46777999999999999998743
No 389
>PRK03094 hypothetical protein; Provisional
Probab=39.82 E-value=18 Score=25.88 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=19.3
Q ss_pred chhHHHHHHHHHHHhCCceEEEEe
Q 012132 88 GGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
|.+.-+.++.++|+++||+|.=+.
T Consensus 5 aVE~~Ls~i~~~L~~~GYeVv~l~ 28 (80)
T PRK03094 5 GVEQSLTDVQQALKQKGYEVVQLR 28 (80)
T ss_pred EeecCcHHHHHHHHHCCCEEEecC
Confidence 335567889999999999998764
No 390
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=39.45 E-value=1.8e+02 Score=28.46 Aligned_cols=102 Identities=9% Similarity=0.073 Sum_probs=55.3
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc
Q 012132 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~ 347 (470)
.++.+.+..+++....-...+++.+. + ++|+.++++.-... ...+..++ ..+-...+.+++..
T Consensus 49 ~~~~iW~Ha~s~Ge~~~~~~l~~~l~---~-------~~~~~~i~~t~~t~----~~~~~~~~---~~~~~~~~~~~P~d 111 (425)
T PRK05749 49 KGPLIWFHAVSVGETRAAIPLIRALR---K-------RYPDLPILVTTMTP----TGSERAQA---LFGDDVEHRYLPYD 111 (425)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHHH---H-------hCCCCcEEEeCCCc----cHHHHHHH---hcCCCceEEEecCC
Confidence 34567777777765444444444332 2 34777776554321 11222221 11211224455532
Q ss_pred --CCHHHHHHh--cCEEEEccCCcccccchHHHHHHhcCCCEEecC
Q 012132 348 --LTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389 (470)
Q Consensus 348 --~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~ 389 (470)
..+..+++. -|+++... .|-++..+..+-..|+|++..+
T Consensus 112 ~~~~~~~~l~~~~Pd~v~~~~---~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 112 LPGAVRRFLRFWRPKLVIIME---TELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred cHHHHHHHHHhhCCCEEEEEe---cchhHHHHHHHHHCCCCEEEEe
Confidence 344555544 48877654 4667877778888999998754
No 391
>COG3181 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.37 E-value=3e+02 Score=25.95 Aligned_cols=143 Identities=16% Similarity=0.149 Sum_probs=75.5
Q ss_pred EEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc---cCCHH
Q 012132 275 IINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK---TLTVA 351 (470)
Q Consensus 275 ~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~---~~~~~ 351 (470)
.+-.-.+.|.+..+++.++ .+|+ .+.+.|.|. +. ...-....+.+..|+ .+.+..+ -+-+.
T Consensus 127 ~v~~~s~~~t~~dlv~~~k-----------~~p~-~v~~~~~g~-Gs-~dhl~~~~~~k~~Gi--~~~~Vpy~g~gea~t 190 (319)
T COG3181 127 VVRADSPYKTLKDLVAYAK-----------ADPG-SVIGGGSGL-GS-ADHLAGALFAKAAGI--KITYVPYKGGGEALT 190 (319)
T ss_pred EEeCCCCcccHHHHHHHHH-----------hCCC-eEEecCCCC-Cc-HHHHHHHHHHHHhCC--ceeEEeecCccHHHH
Confidence 3444478999999998886 3477 334433332 11 233444566667776 3555444 35566
Q ss_pred HHH-HhcCEEEEccCCcccccchHHHHHHhcCCCEE--------ecCCCCccee----eecCceeeeecCCC--CChHHH
Q 012132 352 PYL-AAIDVLVQNSQAWGECFGRITIEAMAFQLPVL--------GTAAGGTTEI----VVNGTTGLLHPVGK--EGITPL 416 (470)
Q Consensus 352 ~~~-~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI--------~s~~~g~~e~----v~~~~~G~l~~~~d--~~~~~l 416 (470)
+++ ...|+.+... .|..+ -+++--..+-.| ..|++-..|. +-....|+..+++- +..+.+
T Consensus 191 aLlgg~v~a~~~~~---se~~~--~vksG~lr~Lav~s~eRl~~~pdvPT~~E~G~~~~~~~wrgvfap~g~~~e~~~~~ 265 (319)
T COG3181 191 ALLGGHVDAGSTNL---SELLS--QVKSGTLRLLAVFSEERLPGLPDVPTLKEQGYDVVMSIWRGVFAPAGTPDEIIAKL 265 (319)
T ss_pred HHhcCceeeeecCh---hhhhh--hhccCceEEEEeechhhcCCCCCCCChHhcCCceeeeeeeEEEeCCCCCHHHHHHH
Confidence 666 4556655322 22222 111111111111 2233322221 12345677777664 124567
Q ss_pred HHHHHHHHhCHHHHHHHHHHHH
Q 012132 417 AKNIVKLATHVERRLTMGKRGY 438 (470)
Q Consensus 417 a~~i~~ll~~~~~~~~~~~~a~ 438 (470)
.+++++++.+++.++.+.+...
T Consensus 266 ~~a~kk~l~s~e~~~~~~~~~~ 287 (319)
T COG3181 266 SAALKKALASPEWQKRLKELGL 287 (319)
T ss_pred HHHHHHHhcCHHHHHHHHhcCC
Confidence 8889999999998887766544
No 392
>PRK08105 flavodoxin; Provisional
Probab=39.26 E-value=60 Score=26.59 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=25.5
Q ss_pred EEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEe
Q 012132 76 LVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 76 kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
||+++- .+-+|. +.++..+++.|.+.|++|.+..
T Consensus 3 ~i~I~Y--gS~tGnte~~A~~l~~~l~~~g~~~~~~~ 37 (149)
T PRK08105 3 KVGIFV--GTVYGNALLVAEEAEAILTAQGHEVTLFE 37 (149)
T ss_pred eEEEEE--EcCchHHHHHHHHHHHHHHhCCCceEEec
Confidence 555553 223444 8999999999999999998875
No 393
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=39.21 E-value=1.6e+02 Score=21.87 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHh---cCCCEEe-cCCCC---c
Q 012132 323 KFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---FQLPVLG-TAAGG---T 393 (470)
Q Consensus 323 ~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma---~G~PvI~-s~~~g---~ 393 (470)
.....++...+..|+. .+......++....+.. .|++++-... ...-|..+++.+. .++|+|. |+... .
T Consensus 9 ~~~~~l~~~l~~~~~~-~v~~~~~~~~~~~~~~~~~~d~iiid~~~-~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~ 86 (112)
T PF00072_consen 9 EIRELLEKLLERAGYE-EVTTASSGEEALELLKKHPPDLIIIDLEL-PDGDGLELLEQIRQINPSIPIIVVTDEDDSDEV 86 (112)
T ss_dssp HHHHHHHHHHHHTTEE-EEEEESSHHHHHHHHHHSTESEEEEESSS-SSSBHHHHHHHHHHHTTTSEEEEEESSTSHHHH
T ss_pred HHHHHHHHHHHhCCCC-EEEEECCHHHHHHHhcccCceEEEEEeee-ccccccccccccccccccccEEEecCCCCHHHH
Confidence 3455556666654431 34444433444444433 4777766541 3344555554443 3677663 33332 3
Q ss_pred ceeeecCceeeeecCCCCChHHHHHHHH
Q 012132 394 TEIVVNGTTGLLHPVGKEGITPLAKNIV 421 (470)
Q Consensus 394 ~e~v~~~~~G~l~~~~d~~~~~la~~i~ 421 (470)
.+....|..|++..|-+ .++|.++|.
T Consensus 87 ~~~~~~g~~~~l~kp~~--~~~l~~~i~ 112 (112)
T PF00072_consen 87 QEALRAGADDYLSKPFS--PEELRAAIN 112 (112)
T ss_dssp HHHHHTTESEEEESSSS--HHHHHHHHH
T ss_pred HHHHHCCCCEEEECCCC--HHHHHHhhC
Confidence 44556688899999988 899988774
No 394
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=38.82 E-value=77 Score=28.65 Aligned_cols=89 Identities=13% Similarity=0.014 Sum_probs=51.2
Q ss_pred HHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcce-eeecCceeeeecCCCCChHHHHHHHHHHHh--CH
Q 012132 351 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTE-IVVNGTTGLLHPVGKEGITPLAKNIVKLAT--HV 427 (470)
Q Consensus 351 ~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e-~v~~~~~G~l~~~~d~~~~~la~~i~~ll~--~~ 427 (470)
..-++.||++|..... .|++--.+.++.......+..-..++.. --.++ .-+..++.+ ...++++|.+.+. +|
T Consensus 42 ~~~l~~Adlvv~~G~~-~e~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~n-pH~Wldp~~--~~~~~~~Ia~~L~~~~P 117 (256)
T PF01297_consen 42 IKKLQKADLVVYNGLG-LEPWLEKLLESSQNPKVKVIDLSEGIDLDHHGHN-PHVWLDPEN--AKKMAEAIADALSELDP 117 (256)
T ss_dssp HHHHHHSSEEEES-TT-TSCCHHHHHHTTTTTTTEEEETTTTS-GSTTCBE-STGGGSHHH--HHHHHHHHHHHHHHHTG
T ss_pred HHHHHhCCEEEEeCCc-cchhhhhhhhcccccccceEEeecccccccCCCC-CchHHHHHH--HHHHHHHHHHHHHHhCc
Confidence 3456889999987652 6777656664444554444443334321 01011 124445544 6777777777766 77
Q ss_pred HHHHHHHHHHHHHHHH
Q 012132 428 ERRLTMGKRGYERVKE 443 (470)
Q Consensus 428 ~~~~~~~~~a~~~~~~ 443 (470)
+..+...+|+.++..+
T Consensus 118 ~~~~~y~~N~~~~~~~ 133 (256)
T PF01297_consen 118 ANKDYYEKNAEKYLKE 133 (256)
T ss_dssp GGHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH
Confidence 7777777777766543
No 395
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=38.77 E-value=2.8e+02 Score=25.60 Aligned_cols=15 Identities=20% Similarity=0.129 Sum_probs=10.6
Q ss_pred HHHhCCceEEEEecC
Q 012132 99 LLRGVGTKVNWITIQ 113 (470)
Q Consensus 99 ~L~~~G~~V~v~~~~ 113 (470)
.+.+.|++|.+++..
T Consensus 23 ~~a~~G~~V~vV~~T 37 (283)
T TIGR03446 23 RYAAEGHDVMVVTCT 37 (283)
T ss_pred HHHHCCCeEEEEEec
Confidence 456678888888743
No 396
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=38.74 E-value=56 Score=27.15 Aligned_cols=31 Identities=13% Similarity=-0.022 Sum_probs=23.9
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
||||.|+.- ...-..+++.|.+.||+|.++-
T Consensus 1 m~~Ig~IGl-------G~mG~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 1 MMKIGFIGL-------GNMGSAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp -BEEEEE---------SHHHHHHHHHHHHTTTEEEEEE
T ss_pred CCEEEEEch-------HHHHHHHHHHHHhcCCeEEeec
Confidence 578888864 2677889999999999999875
No 397
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=38.70 E-value=38 Score=31.79 Aligned_cols=39 Identities=8% Similarity=-0.120 Sum_probs=28.8
Q ss_pred cEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|||+|+.....--.. .-....|..+.+++||+|.++...
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~ 40 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPG 40 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehh
Confidence 689999875322111 236778999999999999999854
No 398
>PRK07283 hypothetical protein; Provisional
Probab=38.64 E-value=1.5e+02 Score=22.17 Aligned_cols=75 Identities=13% Similarity=0.190 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEc
Q 012132 284 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQN 363 (470)
Q Consensus 284 g~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~p 363 (470)
|.+.+.+++.. ..++++|+....+. ...+.+.+.++.++++ +......+++-..+..- ..++.
T Consensus 22 G~~~v~~aik~------------gk~~lVi~A~Das~--~~~kk~~~~~~~~~Vp--~~~~~t~~eLG~a~Gk~-~~vva 84 (98)
T PRK07283 22 GEELVVKAIQS------------GQAKLVFLANDAGP--NLTKKVTDKSNYYQVE--VSTVFSTLELSAAVGKP-RKVLA 84 (98)
T ss_pred cHHHHHHHHHc------------CCccEEEEeCCCCH--HHHHHHHHHHHHcCCC--EEEeCCHHHHHHHhCCC-ceEEE
Confidence 45667776642 56788888765322 3567777777777765 33333446677777653 33333
Q ss_pred cCCcccccchHHHH
Q 012132 364 SQAWGECFGRITIE 377 (470)
Q Consensus 364 S~~~~E~~g~~~lE 377 (470)
-. .+||.-.+++
T Consensus 85 i~--d~g~a~~l~~ 96 (98)
T PRK07283 85 VT--DAGFSKKMRS 96 (98)
T ss_pred Ee--ChhHHHHHHH
Confidence 33 6777666554
No 399
>PLN02572 UDP-sulfoquinovose synthase
Probab=38.06 E-value=61 Score=32.21 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=24.7
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
++|+||+.. |....-..|++.|.++|++|.++.
T Consensus 46 ~~k~VLVTG------atGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 46 KKKKVMVIG------GDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred cCCEEEEEC------CCcHHHHHHHHHHHHCCCeEEEEe
Confidence 456776553 445677788999999999999874
No 400
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=37.85 E-value=71 Score=29.21 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=30.5
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
..|++.|++..+..|-...+.+||..|++.|+.|.++-.
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~ 140 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDA 140 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 457777776555455578999999999999999998864
No 401
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=37.75 E-value=3.1e+02 Score=24.84 Aligned_cols=81 Identities=19% Similarity=0.268 Sum_probs=49.9
Q ss_pred cCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCC-----CcEEEecc---------------------c------CCHHH
Q 012132 305 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-----DRVHFVNK---------------------T------LTVAP 352 (470)
Q Consensus 305 ~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-----~~V~~~g~---------------------~------~~~~~ 352 (470)
+..+.+++++|.|...-. --+.+.+...+.|+. ++|.+... . .++.+
T Consensus 22 ~l~d~riv~~GAGsAg~g-ia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~e 100 (255)
T PF03949_consen 22 KLSDQRIVFFGAGSAGIG-IARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLE 100 (255)
T ss_dssp -GGG-EEEEEB-SHHHHH-HHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHH
T ss_pred CHHHcEEEEeCCChhHHH-HHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCcccccccCHHH
Confidence 457889999999832211 234444444444885 67766541 0 16777
Q ss_pred HHHhc--CEEEEccCCcccccchHHHHHHhc--CCCEEe
Q 012132 353 YLAAI--DVLVQNSQAWGECFGRITIEAMAF--QLPVLG 387 (470)
Q Consensus 353 ~~~~a--Dv~v~pS~~~~E~~g~~~lEAma~--G~PvI~ 387 (470)
.++.+ |++|-.|.. ...|.--++++|+. -.|+|-
T Consensus 101 av~~~kPtvLIG~S~~-~g~ft~evv~~Ma~~~erPIIF 138 (255)
T PF03949_consen 101 AVKGAKPTVLIGLSGQ-GGAFTEEVVRAMAKHNERPIIF 138 (255)
T ss_dssp HHHCH--SEEEECSSS-TTSS-HHHHHHCHHHSSSEEEE
T ss_pred HHHhcCCCEEEEecCC-CCcCCHHHHHHHhccCCCCEEE
Confidence 88888 999988841 66788889999975 577774
No 402
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=37.58 E-value=57 Score=31.69 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=22.6
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
|||+++..+. +-.+....|++.||||.++.
T Consensus 1 mkiaiigqs~-------fg~~vy~~lrk~gheiv~vf 30 (881)
T KOG2452|consen 1 MKIAVIGQSL-------FGQEVYCHLRKEGHEVVGVF 30 (881)
T ss_pred CeeEEechhh-------hhHHHHHHHHhcCceEEEEE
Confidence 6888887643 44566789999999986654
No 403
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=37.55 E-value=2.2e+02 Score=26.63 Aligned_cols=75 Identities=19% Similarity=0.190 Sum_probs=45.2
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
+..||+++.... ..+++..++..++..|.+|.++++..-...... .+.....|..+.......... ...|
T Consensus 149 ~g~~va~vGD~~----~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~----~~~~~~~G~~v~~~~d~~~a~--~~aD 218 (301)
T TIGR00670 149 DGLKIALVGDLK----YGRTVHSLAEALTRFGVEVYLISPEELRMPKEI----LEELKAKGIKVRETESLEEVI--DEAD 218 (301)
T ss_pred CCCEEEEEccCC----CCcHHHHHHHHHHHcCCEEEEECCccccCCHHH----HHHHHHcCCEEEEECCHHHHh--CCCC
Confidence 457899887421 137899999999999999999997654222221 122223455543333332222 3678
Q ss_pred EEEEc
Q 012132 153 LIVLN 157 (470)
Q Consensus 153 iV~~~ 157 (470)
+|+..
T Consensus 219 vvyt~ 223 (301)
T TIGR00670 219 VLYVT 223 (301)
T ss_pred EEEEC
Confidence 88874
No 404
>COG0684 MenG Demethylmenaquinone methyltransferase [Coenzyme metabolism]
Probab=37.54 E-value=2.8e+02 Score=24.26 Aligned_cols=100 Identities=17% Similarity=0.092 Sum_probs=62.9
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEE
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (470)
|.--|+|-|.|..+..-+.+.+-.++...|.. -+...|-+.|+.+ +...|+-++..- .-+.+..-...-...+||.
T Consensus 70 ~GdVLVid~~g~~~~A~~Gd~la~~a~~~G~~-GvVidG~vRDv~~-l~el~~pv~a~~--~~p~~~~k~~~geinvpV~ 145 (210)
T COG0684 70 PGDVLVIDGGGDLRRALWGDLLATLAKVRGWA-GVVIDGAVRDVDE-LRELDFPVFARG--VTPRGATKRGIGEVNVPVT 145 (210)
T ss_pred CCCEEEEeCCCCcceeehHHHHHHHHHHcCcc-EEEEeceeechHH-HhhcCCCeEecc--ccCCCCCcCCcceecccEE
Confidence 45578888887645445788899999999886 4666676555433 445565554422 2222333333456678888
Q ss_pred ecCCCC-cceeeecCceeeeecCCC
Q 012132 387 GTAAGG-TTEIVVNGTTGLLHPVGK 410 (470)
Q Consensus 387 ~s~~~g-~~e~v~~~~~G~l~~~~d 410 (470)
+....- ..+++.-..+|+++-|..
T Consensus 146 ~gGv~v~PGD~vvgD~dGvVVvp~~ 170 (210)
T COG0684 146 CGGVTVNPGDIVVADADGVVVVPAE 170 (210)
T ss_pred ECCEEECCCCEEEEcCCceEEeccc
Confidence 876442 356666677899988654
No 405
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=37.49 E-value=3e+02 Score=27.23 Aligned_cols=40 Identities=10% Similarity=0.304 Sum_probs=27.0
Q ss_pred EEEEeecc-cCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCC
Q 012132 273 FAIINSVS-RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM 318 (470)
Q Consensus 273 i~~vGrl~-~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~ 318 (470)
|+.+|... ...|=+.++.++-.-.+. ..|++.+.|.-..+
T Consensus 3 i~i~G~~g~~N~GdeAil~~ii~~l~~------~~p~~~i~v~S~~P 43 (426)
T PRK10017 3 LLILGNHTCGNRGDSAILRGLLDAINI------LNPHAEVDVMSRYP 43 (426)
T ss_pred EEEEccccCCCccHHHHHHHHHHHHHh------hCCCCeEEEEecCc
Confidence 44566553 478888888886443322 45999999998764
No 406
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=37.45 E-value=2e+02 Score=22.48 Aligned_cols=19 Identities=11% Similarity=0.282 Sum_probs=11.4
Q ss_pred hHHhhcCCcEEEEcccchh
Q 012132 144 TINTALKADLIVLNTAVAG 162 (470)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~ 162 (470)
.+.+..+||+|+++.+...
T Consensus 94 ~~i~~~~p~~V~t~~~~~~ 112 (128)
T PF02585_consen 94 DLIREFRPDVVFTPDPDDG 112 (128)
T ss_dssp HHHHHH-ESEEEEE-STTS
T ss_pred HHHHHcCCCEEEECCCCCC
Confidence 4445678899888875543
No 407
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=37.36 E-value=2.9e+02 Score=24.42 Aligned_cols=73 Identities=18% Similarity=0.286 Sum_probs=46.5
Q ss_pred cCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEec-CCCCcceeeecCceeeeecCCCCCh
Q 012132 335 KKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGI 413 (470)
Q Consensus 335 ~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s-~~~g~~e~v~~~~~G~l~~~~d~~~ 413 (470)
+.+++.+.|...... |++|.-.. .|. -.+++||.-+++|+|+- |.-..++.+. +.++.+| |.
T Consensus 160 ~~~pd~~~f~~t~~~--------D~vvvln~--~e~-~sAilEA~K~~IPTIgIVDtN~~P~liT-----YpVPaND-Ds 222 (251)
T KOG0832|consen 160 LSLPDALCFLPTLTP--------DLVVVLNP--EEN-HSAILEAAKMAIPTIGIVDTNCNPELIT-----YPVPAND-DS 222 (251)
T ss_pred cCCCcceeecccCCc--------ceeEecCc--ccc-cHHHHHHHHhCCCeEEEecCCCCcccee-----eccCCCC-Cc
Confidence 445667777765422 88877665 455 45899999999999974 4444566652 5666665 34
Q ss_pred HHHHHHHHHHH
Q 012132 414 TPLAKNIVKLA 424 (470)
Q Consensus 414 ~~la~~i~~ll 424 (470)
..-.+-+..++
T Consensus 223 ~~sv~f~~~l~ 233 (251)
T KOG0832|consen 223 PASVEFILNLL 233 (251)
T ss_pred HHHHHHHHHHH
Confidence 44455555554
No 408
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=37.27 E-value=1.3e+02 Score=26.21 Aligned_cols=72 Identities=17% Similarity=0.155 Sum_probs=41.1
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCcE
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADL 153 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 153 (470)
||+|.++. ....-.-|++.|...||||.+-+...+.... ......+..+.... ........|+
T Consensus 1 m~~~~i~G-------tGniG~alA~~~a~ag~eV~igs~r~~~~~~-------a~a~~l~~~i~~~~---~~dA~~~aDV 63 (211)
T COG2085 1 MMIIAIIG-------TGNIGSALALRLAKAGHEVIIGSSRGPKALA-------AAAAALGPLITGGS---NEDAAALADV 63 (211)
T ss_pred CcEEEEec-------cChHHHHHHHHHHhCCCeEEEecCCChhHHH-------HHHHhhccccccCC---hHHHHhcCCE
Confidence 35565554 3456677899999999999998765543221 11112222222211 1122345899
Q ss_pred EEEcccchh
Q 012132 154 IVLNTAVAG 162 (470)
Q Consensus 154 V~~~~~~~~ 162 (470)
|++--|+..
T Consensus 64 VvLAVP~~a 72 (211)
T COG2085 64 VVLAVPFEA 72 (211)
T ss_pred EEEeccHHH
Confidence 998876643
No 409
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.24 E-value=2.4e+02 Score=28.32 Aligned_cols=72 Identities=18% Similarity=0.144 Sum_probs=42.4
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
..++|+++.. | ..-..+|+.|.++|++|+++-..... ....+...+...|+.++.-.... ....+|
T Consensus 15 ~~~~v~viG~-----G--~~G~~~A~~L~~~G~~V~~~d~~~~~----~~~~~~~~l~~~gv~~~~~~~~~---~~~~~D 80 (480)
T PRK01438 15 QGLRVVVAGL-----G--VSGFAAADALLELGARVTVVDDGDDE----RHRALAAILEALGATVRLGPGPT---LPEDTD 80 (480)
T ss_pred CCCEEEEECC-----C--HHHHHHHHHHHHCCCEEEEEeCCchh----hhHHHHHHHHHcCCEEEECCCcc---ccCCCC
Confidence 4568888752 2 23334689999999999987533211 11123344566787775433222 235689
Q ss_pred EEEEcc
Q 012132 153 LIVLNT 158 (470)
Q Consensus 153 iV~~~~ 158 (470)
+|+...
T Consensus 81 ~Vv~s~ 86 (480)
T PRK01438 81 LVVTSP 86 (480)
T ss_pred EEEECC
Confidence 888765
No 410
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=37.15 E-value=1e+02 Score=30.82 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=19.1
Q ss_pred cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeee
Q 012132 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEM 187 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 187 (470)
.+||+||.|....+.....+..+ ...+...+.|..
T Consensus 400 ~~PdlI~GnYsDgnlvA~LLs~~----lgv~~~~iaHsL 434 (550)
T PF00862_consen 400 GKPDLIIGNYSDGNLVASLLSRK----LGVTQCFIAHSL 434 (550)
T ss_dssp S--SEEEEEHHHHHHHHHHHHHH----HT-EEEEE-SS-
T ss_pred CCCcEEEeccCcchHHHHHHHhh----cCCceehhhhcc
Confidence 78999999986655544433333 225677778854
No 411
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=37.08 E-value=18 Score=36.59 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHhCCceEEEEec
Q 012132 90 PLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 90 ~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
-..+..++++|.++||+|+++++
T Consensus 13 ~~~~~~l~~~L~~rGH~VTvl~~ 35 (500)
T PF00201_consen 13 FIFMRPLAEELAERGHNVTVLTP 35 (500)
T ss_dssp HHHHHHHHHHHHHH-TTSEEEHH
T ss_pred HHHHHHHHHHHHhcCCceEEEEe
Confidence 57899999999999999999984
No 412
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=36.99 E-value=67 Score=28.95 Aligned_cols=34 Identities=26% Similarity=0.097 Sum_probs=27.1
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
.+|++++..-..||- -.-+|+.|..+|++|.|+.
T Consensus 61 ~~V~VlcG~GNNGGD---Glv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 61 PRVLLVCGPGNNGGD---GLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred CeEEEEECCCCCchh---HHHHHHHHHHCCCeEEEEE
Confidence 479999887777663 4456788999999999998
No 413
>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]
Probab=36.98 E-value=3.4e+02 Score=25.60 Aligned_cols=93 Identities=14% Similarity=0.160 Sum_probs=49.5
Q ss_pred CCeEEEEEeecccCCCHHHHHHHH-H-HHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc
Q 012132 269 EDLLFAIINSVSRGKGQDLFLHSF-Y-ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (470)
Q Consensus 269 ~~~~i~~vGrl~~~Kg~~~ll~a~-~-~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~ 346 (470)
+.++++=+|--..-|.-.++--|. . ...+.+. +.+.|.+-|+=+|.......++..+--++.++. +.+.|+|+
T Consensus 138 ~~~~~LDvGANvd~~~~~L~qfA~MG~~ya~~v~--~~~~PrVgLLNIG~Ee~KG~e~~kea~~lLk~~---~~~nF~Gn 212 (338)
T COG0416 138 GKTVVLDVGANVDCKPEHLVQFALMGSAYAEKVL--GIKNPRVGLLNIGTEEIKGNELVKEAYELLKET---PLINFIGN 212 (338)
T ss_pred CceEEEeCCCCCCCCHHHHHHHHHHHHHHHHHhc--CCCCCcEEEEecccccccCCHHHHHHHHHHHhC---CCCceeee
Confidence 446777777655555433322221 1 1111111 114588888888875443334444444444443 34778888
Q ss_pred cCCHHHHHHhcCEEEEccCCcccccc
Q 012132 347 TLTVAPYLAAIDVLVQNSQAWGECFG 372 (470)
Q Consensus 347 ~~~~~~~~~~aDv~v~pS~~~~E~~g 372 (470)
++-=.=+...+|++| .+||.
T Consensus 213 vEg~di~~G~~DVvV------~DGFt 232 (338)
T COG0416 213 VEGRDILDGTVDVVV------TDGFT 232 (338)
T ss_pred ccccccccCCCCEEE------eCCcc
Confidence 744333456789999 66663
No 414
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=36.75 E-value=65 Score=29.38 Aligned_cols=36 Identities=28% Similarity=0.188 Sum_probs=26.9
Q ss_pred cEEEEEeeccCCCch--hHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGG--PLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~--~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
.||+-++ . .||. ...+.+||..|+++|+.|.++-.+
T Consensus 2 ~~iIav~-~--KGGVGKTT~~~nLA~~la~~G~kVLliD~D 39 (270)
T PRK13185 2 ALVLAVY-G--KGGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39 (270)
T ss_pred ceEEEEE-C--CCCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 3555554 2 5665 477899999999999999988643
No 415
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=36.75 E-value=67 Score=26.79 Aligned_cols=76 Identities=12% Similarity=0.064 Sum_probs=46.1
Q ss_pred CCHHHHHHhcCEEEEccC----CcccccchHHHHHHhcCCCEEecC-----CCCcceeeecCceeee-ecCCCCChHHHH
Q 012132 348 LTVAPYLAAIDVLVQNSQ----AWGECFGRITIEAMAFQLPVLGTA-----AGGTTEIVVNGTTGLL-HPVGKEGITPLA 417 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~----~~~E~~g~~~lEAma~G~PvI~s~-----~~g~~e~v~~~~~G~l-~~~~d~~~~~la 417 (470)
..+...+..||+.+.--. .-.-.|.-.+-|.|-+++|+|++- .+...++- ....-++ .++.| -+.+.
T Consensus 92 ~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik-~~~~v~v~lt~~N--R~~i~ 168 (179)
T COG1618 92 PALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIK-KLGGVYVFLTPEN--RNRIL 168 (179)
T ss_pred HHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHhh-hcCCEEEEEccch--hhHHH
Confidence 345566778899885211 012345666779999999999973 23333332 2222333 56666 66777
Q ss_pred HHHHHHHhC
Q 012132 418 KNIVKLATH 426 (470)
Q Consensus 418 ~~i~~ll~~ 426 (470)
+.|..+|.+
T Consensus 169 ~~Il~~L~~ 177 (179)
T COG1618 169 NEILSVLKG 177 (179)
T ss_pred HHHHHHhcc
Confidence 777777654
No 416
>PRK12862 malic enzyme; Reviewed
Probab=36.74 E-value=4e+02 Score=28.68 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=52.5
Q ss_pred cCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCC-CcEEEecc------------------------cCCHHHHHHhcCE
Q 012132 305 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNK------------------------TLTVAPYLAAIDV 359 (470)
Q Consensus 305 ~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-~~V~~~g~------------------------~~~~~~~~~~aDv 359 (470)
+..+.++++.|.|. -.--+-++....|+. +++.+... ...+.+.+..+|+
T Consensus 190 ~~~~~~iv~~GaGa-----ag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v 264 (763)
T PRK12862 190 DIEDVKLVASGAGA-----AALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADV 264 (763)
T ss_pred ChhhcEEEEEChhH-----HHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCE
Confidence 55688999999883 333444455556775 35554330 0347777888999
Q ss_pred EEEccCCcccccchHHHHHHhcCCCEEec
Q 012132 360 LVQNSQAWGECFGRITIEAMAFQLPVLGT 388 (470)
Q Consensus 360 ~v~pS~~~~E~~g~~~lEAma~G~PvI~s 388 (470)
|+-.|. ...|.--+++.|+ ..|+|-.
T Consensus 265 ~iG~s~--~g~~~~~~v~~M~-~~piifa 290 (763)
T PRK12862 265 FLGLSA--AGVLKPEMVKKMA-PRPLIFA 290 (763)
T ss_pred EEEcCC--CCCCCHHHHHHhc-cCCEEEe
Confidence 999887 6678888999998 7888854
No 417
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=36.73 E-value=64 Score=28.78 Aligned_cols=40 Identities=23% Similarity=0.141 Sum_probs=27.2
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
|||..+.+.-+-.|-...+.+|+..|+++|+.|.++-.+.
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~ 40 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDP 40 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 3444444322222336889999999999999999987543
No 418
>PLN02208 glycosyltransferase family protein
Probab=36.70 E-value=63 Score=32.08 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=29.6
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
.+|+++- ++.-|.-.-+.+||+.|..+|++|++++..
T Consensus 5 ~hvv~~P--~paqGHi~P~l~LAk~La~~G~~VT~vtt~ 41 (442)
T PLN02208 5 FHAFMFP--WFAFGHMIPFLHLANKLAEKGHRVTFLLPK 41 (442)
T ss_pred CEEEEec--CccccHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 4666665 444566788999999999999999999943
No 419
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=36.68 E-value=71 Score=29.05 Aligned_cols=39 Identities=10% Similarity=-0.055 Sum_probs=24.5
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhC---CceEEEEecCCCC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV---GTKVNWITIQKPS 116 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~---G~~V~v~~~~~~~ 116 (470)
||||+...+---. .-+..|+++|.+. |++|+|+++...+
T Consensus 1 M~ILlTNDDGI~a---~Gl~aL~~~l~~~~~~~~~V~VVAP~~eq 42 (261)
T PRK13931 1 MRILITNDDGINA---PGLEVLEQIATELAGPDGEVWTVAPAFEQ 42 (261)
T ss_pred CeEEEEcCCCCCC---HhHHHHHHHHHHhccCCCeEEEEeCCCCC
Confidence 5888887753221 2255566666553 4799999876554
No 420
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=36.47 E-value=1.3e+02 Score=23.77 Aligned_cols=77 Identities=16% Similarity=0.106 Sum_probs=36.9
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEe--cCChhhHHhhcCCc
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS--AKGQETINTALKAD 152 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~D 152 (470)
||||||+..-. .-+..+..+.+.+.. ..+.+.+..-.. ..........+.+.|+.+-. .+..... ....+|
T Consensus 1 ~~vlfvC~~N~--cRS~mAEa~~~~~~~--~~~~v~SAG~~~--~~~~p~a~~~l~e~Gid~~~~~s~~l~~~-~~~~~D 73 (126)
T TIGR02689 1 KKVMFVCKRNS--CRSQMAEGFAKTLGA--GNIAVTSAGLEV--SRVHPTAIEVMSEIGIDISGQTSKPLENF-HPEDYD 73 (126)
T ss_pred CeEEEEcCCcH--HHHHHHHHHHHHhcC--CCEEEEcCcCCC--CCCCHHHHHHHHHhCCCcccCccccCChh-HhcCCC
Confidence 68999996431 112334444444432 345555532211 11222234556667777632 2222111 235789
Q ss_pred EEEEcc
Q 012132 153 LIVLNT 158 (470)
Q Consensus 153 iV~~~~ 158 (470)
+|++-+
T Consensus 74 ~iitm~ 79 (126)
T TIGR02689 74 VVISLC 79 (126)
T ss_pred EEEEeC
Confidence 999764
No 421
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=36.46 E-value=68 Score=29.03 Aligned_cols=38 Identities=18% Similarity=0.037 Sum_probs=26.7
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (470)
||||+...+-... .-+..|+++|.+ +++|.|+++...+
T Consensus 1 M~ILvtNDDGi~a---pGl~aL~~~l~~-~~~V~VvAP~~~~ 38 (253)
T PRK13933 1 MNILLTNDDGINA---EGINTLAELLSK-YHEVIIVAPENQR 38 (253)
T ss_pred CeEEEEcCCCCCC---hhHHHHHHHHHh-CCcEEEEccCCCC
Confidence 6888888764322 237788888876 5799999876544
No 422
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=36.43 E-value=1.4e+02 Score=27.59 Aligned_cols=73 Identities=18% Similarity=0.105 Sum_probs=44.7
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhC--CceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC----C-----
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK----G----- 141 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----- 141 (470)
++|||+++.+. ....+..|..+.... +++|.++....+. ......+.|++++... .
T Consensus 88 ~~~ri~vl~Sg-----~g~nl~al~~~~~~~~~~~~i~~visn~~~--------~~~lA~~~gIp~~~~~~~~~~~~~~~ 154 (286)
T PRK13011 88 ARPKVLIMVSK-----FDHCLNDLLYRWRIGELPMDIVGVVSNHPD--------LEPLAAWHGIPFHHFPITPDTKPQQE 154 (286)
T ss_pred cCceEEEEEcC-----CcccHHHHHHHHHcCCCCcEEEEEEECCcc--------HHHHHHHhCCCEEEeCCCcCchhhhH
Confidence 46789988864 335677777776554 5788776554432 2333566788775421 1
Q ss_pred --hhhHHhhcCCcEEEEcc
Q 012132 142 --QETINTALKADLIVLNT 158 (470)
Q Consensus 142 --~~~~~~~~~~DiV~~~~ 158 (470)
.....+..++|+|++..
T Consensus 155 ~~~~~~l~~~~~Dlivlag 173 (286)
T PRK13011 155 AQVLDVVEESGAELVVLAR 173 (286)
T ss_pred HHHHHHHHHhCcCEEEEeC
Confidence 12234567899998864
No 423
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=36.37 E-value=60 Score=30.10 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=27.0
Q ss_pred cEEEEEeeccCCCch--hHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGG--PLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~--~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|||.+.. .||. ...+.+|+.+|+++|+.|.++-.+
T Consensus 1 m~ia~~g----KGGVGKTTta~nLA~~La~~G~rVLlID~D 37 (290)
T CHL00072 1 MKLAVYG----KGGIGKSTTSCNISIALARRGKKVLQIGCD 37 (290)
T ss_pred CeEEEEC----CCCCcHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 5666554 4665 477999999999999999888644
No 424
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=36.35 E-value=59 Score=29.56 Aligned_cols=29 Identities=21% Similarity=0.153 Sum_probs=23.8
Q ss_pred CCch--hHHHHHHHHHHHhCCceEEEEecCC
Q 012132 86 LSGG--PLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 86 ~~G~--~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
.||. ...+.+||.+|+++|+.|.++-.+.
T Consensus 9 KGGvGKTT~~~nLA~~La~~G~kVlliD~Dp 39 (270)
T cd02040 9 KGGIGKSTTTQNLSAALAEMGKKVMIVGCDP 39 (270)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 5665 4789999999999999999987543
No 425
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=36.34 E-value=93 Score=22.80 Aligned_cols=63 Identities=21% Similarity=0.233 Sum_probs=35.8
Q ss_pred chhHHHHHHHHHHHhCC---ceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCcEEEEcccc
Q 012132 88 GGPLLLMELAFLLRGVG---TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAV 160 (470)
Q Consensus 88 G~~~~~~~l~~~L~~~G---~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV~~~~~~ 160 (470)
|..+....|++.|.+.| ++|.+++...+.. ..+.....+..+...... ... .+.|+|++..+.
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~-------~~~~~~~~~~~~~~~~~~-~~~--~~advvilav~p 71 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIVSSRSPEK-------AAELAKEYGVQATADDNE-EAA--QEADVVILAVKP 71 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHH-------HHHHHHHCTTEEESEEHH-HHH--HHTSEEEE-S-G
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHH-------HHHHHHhhccccccCChH-Hhh--ccCCEEEEEECH
Confidence 33478899999999999 9999876433221 122223344443332222 222 268999886643
No 426
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=36.23 E-value=1.5e+02 Score=27.15 Aligned_cols=71 Identities=8% Similarity=0.145 Sum_probs=47.0
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEE
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (470)
+++.++.+-+. ..+..++++++++.. ....++.++++.+|+++..+- .+...-...+++..|++|+
T Consensus 30 ~~~el~aV~dr------~~~~a~~~a~~~g~~------~~~~~~eell~~~D~Vvi~tp--~~~h~e~~~~aL~aGk~Vi 95 (271)
T PRK13302 30 PGLTLSAVAVR------DPQRHADFIWGLRRP------PPVVPLDQLATHADIVVEAAP--ASVLRAIVEPVLAAGKKAI 95 (271)
T ss_pred CCeEEEEEECC------CHHHHHHHHHhcCCC------cccCCHHHHhcCCCEEEECCC--cHHHHHHHHHHHHcCCcEE
Confidence 67787755553 233445566655421 112567777888999998776 5555566678999999999
Q ss_pred ecCCC
Q 012132 387 GTAAG 391 (470)
Q Consensus 387 ~s~~~ 391 (470)
+...+
T Consensus 96 ~~s~g 100 (271)
T PRK13302 96 VLSVG 100 (271)
T ss_pred Eecch
Confidence 86544
No 427
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=36.21 E-value=2.2e+02 Score=22.51 Aligned_cols=53 Identities=25% Similarity=0.323 Sum_probs=40.0
Q ss_pred cEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCccee
Q 012132 340 RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEI 396 (470)
Q Consensus 340 ~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~ 396 (470)
.|.+.... +++.+.++.+|+++..+. ..+.-.+++++ -++-+|++...|...+
T Consensus 20 ~v~~~~~~~~~~~~~~l~~~d~ii~~~~---~~~~~~~l~~~-~~Lk~I~~~~~G~d~i 74 (133)
T PF00389_consen 20 EVEFCDSPSEEELAERLKDADAIIVGSG---TPLTAEVLEAA-PNLKLISTAGAGVDNI 74 (133)
T ss_dssp EEEEESSSSHHHHHHHHTTESEEEESTT---STBSHHHHHHH-TT-SEEEESSSSCTTB
T ss_pred eEEEeCCCCHHHHHHHhCCCeEEEEcCC---CCcCHHHHhcc-ceeEEEEEcccccCcc
Confidence 57777643 678889999999997664 35777888888 8999999987776543
No 428
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=36.15 E-value=1.5e+02 Score=26.95 Aligned_cols=88 Identities=14% Similarity=0.018 Sum_probs=49.0
Q ss_pred HHHHHhcCEEEEccCCcccc-cchHHHHHHhcCCCEEecCCCCcceee-e----------------cCceeeeecCCCCC
Q 012132 351 APYLAAIDVLVQNSQAWGEC-FGRITIEAMAFQLPVLGTAAGGTTEIV-V----------------NGTTGLLHPVGKEG 412 (470)
Q Consensus 351 ~~~~~~aDv~v~pS~~~~E~-~g~~~lEAma~G~PvI~s~~~g~~e~v-~----------------~~~~G~l~~~~d~~ 412 (470)
..-++.||++|..... .|+ +=-.++++. -+.++|.... |+.-+. . ...--+..+|.+
T Consensus 46 ~~~l~~Adlvv~~G~~-le~~w~~~~~~~~-~~~~~v~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~-- 120 (266)
T cd01018 46 MKKLSEADLYFRIGLG-FEEVWLERFRSNN-PKMQVVNMSK-GITLIPMADHHHHHHGEHEHHHHGNYDPHIWLSPAN-- 120 (266)
T ss_pred HHHHHhCCEEEEcCCc-chHHHHHHHHhhC-CCCeEEECCC-CceeccccccccccccccccccCCCCCCccCcCHHH--
Confidence 4557888998877652 554 444444433 2445554421 211110 0 001234445555
Q ss_pred hHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHH
Q 012132 413 ITPLAKNIVKLAT--HVERRLTMGKRGYERVKE 443 (470)
Q Consensus 413 ~~~la~~i~~ll~--~~~~~~~~~~~a~~~~~~ 443 (470)
...++++|.+.+. +|+......+|+.++..+
T Consensus 121 ~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~ 153 (266)
T cd01018 121 AKIMAENIYEALAELDPQNATYYQANLDALLAE 153 (266)
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 6778888887776 777777777777766644
No 429
>PRK10037 cell division protein; Provisional
Probab=36.10 E-value=65 Score=29.00 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=22.5
Q ss_pred CCch--hHHHHHHHHHHHhCCceEEEEecC
Q 012132 86 LSGG--PLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 86 ~~G~--~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
.||. .....+|+..|+++|+.|.++-.+
T Consensus 10 KGGvGKTT~a~nLA~~La~~G~rVLlID~D 39 (250)
T PRK10037 10 RGGVGTTSITAALAWSLQMLGENVLVIDAC 39 (250)
T ss_pred CCCccHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 3554 467899999999999999998543
No 430
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=35.80 E-value=1.6e+02 Score=26.12 Aligned_cols=73 Identities=14% Similarity=0.166 Sum_probs=37.5
Q ss_pred EEeecccCCCH-HHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHh-cCCCCcEEEecccCCHHH
Q 012132 275 IINSVSRGKGQ-DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQDRVHFVNKTLTVAP 352 (470)
Q Consensus 275 ~vGrl~~~Kg~-~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~-~~l~~~V~~~g~~~~~~~ 352 (470)
++--++|.|-. +.+++.+ .+ ...-.+++|+.. .. ...+...+.+++ .+++ -|.|.|..+.+.
T Consensus 10 h~~liDPdK~~~~~~~~~~---~~---------~gtDai~VGGS~-~~-~~~d~vv~~ik~~~~lP-vilfPg~~~~vs- 73 (230)
T PF01884_consen 10 HATLIDPDKPNPEEALEAA---CE---------SGTDAIIVGGSD-TG-VTLDNVVALIKRVTDLP-VILFPGSPSQVS- 73 (230)
T ss_dssp EEEEE-TTSS-HHHHHHHH---HC---------TT-SEEEEE-ST-HC-HHHHHHHHHHHHHSSS--EEEETSTCCG---
T ss_pred eEEEECCCCCCcHHHHHHH---Hh---------cCCCEEEECCCC-Cc-cchHHHHHHHHhcCCCC-EEEeCCChhhcC-
Confidence 44457887743 3333333 11 334556777653 12 123334444444 5655 678888765554
Q ss_pred HHHhcCEEEEccC
Q 012132 353 YLAAIDVLVQNSQ 365 (470)
Q Consensus 353 ~~~~aDv~v~pS~ 365 (470)
..+|.+++||.
T Consensus 74 --~~aDail~~sv 84 (230)
T PF01884_consen 74 --PGADAILFPSV 84 (230)
T ss_dssp --TTSSEEEEEEE
T ss_pred --cCCCEEEEEEE
Confidence 56999999987
No 431
>PRK08462 biotin carboxylase; Validated
Probab=35.62 E-value=77 Score=31.49 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=26.7
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (470)
++|||++.. | .....++++++++|++|.+++...+
T Consensus 4 ~k~ili~~~------g-~~~~~~~~~~~~~G~~~v~~~~~~d 38 (445)
T PRK08462 4 IKRILIANR------G-EIALRAIRTIQEMGKEAIAIYSTAD 38 (445)
T ss_pred CCEEEEECC------c-HHHHHHHHHHHHcCCCEEEEechhh
Confidence 468998873 2 3477999999999999988875443
No 432
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=35.43 E-value=4.5e+02 Score=25.94 Aligned_cols=74 Identities=12% Similarity=0.102 Sum_probs=40.1
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCccccc-chHHHHHHhc---CCCE
Q 012132 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECF-GRITIEAMAF---QLPV 385 (470)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~-g~~~lEAma~---G~Pv 385 (470)
++++++.. .+..++++++++. .+ .. .+++.+.+..+|+++..+-. .+++ .-..++.+.. +.|.
T Consensus 208 ~V~v~~r~-------~~ra~~la~~~g~--~~--~~-~~~~~~~l~~aDvVI~aT~s-~~~~i~~~~l~~~~~~~~~~~~ 274 (423)
T PRK00045 208 KITVANRT-------LERAEELAEEFGG--EA--IP-LDELPEALAEADIVISSTGA-PHPIIGKGMVERALKARRHRPL 274 (423)
T ss_pred eEEEEeCC-------HHHHHHHHHHcCC--cE--ee-HHHHHHHhccCCEEEECCCC-CCcEEcHHHHHHHHhhccCCCe
Confidence 45555553 2344555665542 11 11 14566778889999987641 2221 2223444332 4688
Q ss_pred EecCCCCccee
Q 012132 386 LGTAAGGTTEI 396 (470)
Q Consensus 386 I~s~~~g~~e~ 396 (470)
+..|.+..+++
T Consensus 275 vviDla~Prdi 285 (423)
T PRK00045 275 LLVDLAVPRDI 285 (423)
T ss_pred EEEEeCCCCCC
Confidence 88887766655
No 433
>CHL00175 minD septum-site determining protein; Validated
Probab=35.39 E-value=80 Score=28.99 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=28.6
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
++|+.|.+.-+-.|-...+.+|+.+|++.|+.|.++-.+
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D 53 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDAD 53 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 466666654433344688999999999999999888644
No 434
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=35.34 E-value=2.9e+02 Score=24.53 Aligned_cols=70 Identities=17% Similarity=0.141 Sum_probs=38.8
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCcE
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADL 153 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 153 (470)
.++||+|. || .+...=++.|.+.|-+|+|+++.-.+. +........+.+......... ...+++
T Consensus 25 ~~~VLVVG------GG-~VA~RK~~~Ll~~gA~VtVVap~i~~e-------l~~l~~~~~i~~~~r~~~~~d--l~g~~L 88 (223)
T PRK05562 25 KIKVLIIG------GG-KAAFIKGKTFLKKGCYVYILSKKFSKE-------FLDLKKYGNLKLIKGNYDKEF--IKDKHL 88 (223)
T ss_pred CCEEEEEC------CC-HHHHHHHHHHHhCCCEEEEEcCCCCHH-------HHHHHhCCCEEEEeCCCChHH--hCCCcE
Confidence 45566653 44 444555677778999999999654321 222222333444443222221 246788
Q ss_pred EEEccc
Q 012132 154 IVLNTA 159 (470)
Q Consensus 154 V~~~~~ 159 (470)
|++.+.
T Consensus 89 ViaATd 94 (223)
T PRK05562 89 IVIATD 94 (223)
T ss_pred EEECCC
Confidence 887763
No 435
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=35.33 E-value=4e+02 Score=25.35 Aligned_cols=98 Identities=13% Similarity=0.048 Sum_probs=59.0
Q ss_pred EEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEE-------------EeCCCCcChHHHHHHHHHHHhcCCCCcE
Q 012132 275 IINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVI-------------IGSDMNAQTKFESELRNYVMQKKIQDRV 341 (470)
Q Consensus 275 ~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i-------------vG~g~~~~~~~~~~l~~~~~~~~l~~~V 341 (470)
.+| -+.-..-+.+++.++.+++. ..++.. -|-|. +-...|.+..+++|++--.
T Consensus 97 IAG-PCsiEs~e~~~~~A~~lk~~---------ga~~~r~~~fKpRTsp~sf~G~g~----~gL~~L~~~~~~~Gl~v~t 162 (335)
T PRK08673 97 IAG-PCSVESEEQILEIARAVKEA---------GAQILRGGAFKPRTSPYSFQGLGE----EGLKLLAEAREETGLPIVT 162 (335)
T ss_pred EEe-cCccCCHHHHHHHHHHHHHh---------chhhccCcEecCCCCCcccccccH----HHHHHHHHHHHHcCCcEEE
Confidence 455 34456778888888877542 222222 22221 3456788888899986222
Q ss_pred EEecccCCHHHHHHhcCEEEEccCCcccccchHHH-HHHhcCCCEEecCC
Q 012132 342 HFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITI-EAMAFQLPVLGTAA 390 (470)
Q Consensus 342 ~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~l-EAma~G~PvI~s~~ 390 (470)
.+.. ..++..+...+|++-.+|+. ...++ ++ ++...|+||+.++-
T Consensus 163 ev~d-~~~~~~l~~~vd~lqIgAr~-~~N~~--LL~~va~~~kPViLk~G 208 (335)
T PRK08673 163 EVMD-PRDVELVAEYVDILQIGARN-MQNFD--LLKEVGKTNKPVLLKRG 208 (335)
T ss_pred eeCC-HHHHHHHHHhCCeEEECccc-ccCHH--HHHHHHcCCCcEEEeCC
Confidence 2222 24455555668999999972 44444 44 56678999998863
No 436
>COG4327 Predicted membrane protein [Function unknown]
Probab=35.29 E-value=43 Score=24.51 Aligned_cols=22 Identities=36% Similarity=0.532 Sum_probs=14.7
Q ss_pred hHHHHHH-HHHHHHHHHHHHHhh
Q 012132 16 RWILALL-IMLSISTAIAFFIRA 37 (470)
Q Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~~ 37 (470)
+|+-.|+ +-|+||+++.++.+.
T Consensus 19 tli~~lL~vwflVSfvvi~fa~a 41 (101)
T COG4327 19 TLIAALLGVWFLVSFVVILFARA 41 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444 566788888888874
No 437
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=35.29 E-value=2.2e+02 Score=26.25 Aligned_cols=73 Identities=16% Similarity=0.136 Sum_probs=45.3
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCC--ceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC---------
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--------- 141 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 141 (470)
+++||+++.+ |...-+..+..+..+.. .+|.++....+. ......+.|++++....
T Consensus 83 ~~~ki~vl~S-----g~g~nl~~l~~~~~~g~l~~~i~~visn~~~--------~~~~A~~~gIp~~~~~~~~~~~~~~e 149 (280)
T TIGR00655 83 KLKRVAILVS-----KEDHCLGDLLWRWYSGELDAEIALVISNHED--------LRSLVERFGIPFHYIPATKDNRVEHE 149 (280)
T ss_pred CCcEEEEEEc-----CCChhHHHHHHHHHcCCCCcEEEEEEEcChh--------HHHHHHHhCCCEEEcCCCCcchhhhH
Confidence 4578888875 33467788888876543 466666555432 22335567787765432
Q ss_pred --hhhHHhhcCCcEEEEcc
Q 012132 142 --QETINTALKADLIVLNT 158 (470)
Q Consensus 142 --~~~~~~~~~~DiV~~~~ 158 (470)
.....+..++|+|++..
T Consensus 150 ~~~~~~l~~~~~Dlivlag 168 (280)
T TIGR00655 150 KRQLELLKQYQVDLVVLAK 168 (280)
T ss_pred HHHHHHHHHhCCCEEEEeC
Confidence 11334568999999875
No 438
>PLN00198 anthocyanidin reductase; Provisional
Probab=35.27 E-value=81 Score=29.81 Aligned_cols=37 Identities=24% Similarity=0.126 Sum_probs=26.8
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
.+++|+|++.. |....-..|++.|.++||+|.++...
T Consensus 6 ~~~~~~vlItG------~~GfIG~~l~~~L~~~g~~V~~~~r~ 42 (338)
T PLN00198 6 PTGKKTACVIG------GTGFLASLLIKLLLQKGYAVNTTVRD 42 (338)
T ss_pred CCCCCeEEEEC------CchHHHHHHHHHHHHCCCEEEEEECC
Confidence 45567776654 33466778899999999999877644
No 439
>PLN00414 glycosyltransferase family protein
Probab=35.23 E-value=83 Score=31.29 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=29.6
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
+.+|+++- ++.-|.-.-+.+|++.|..+|++|++++..
T Consensus 4 ~~HVvlvP--fpaqGHi~PmL~LAk~Las~G~~VT~vtt~ 41 (446)
T PLN00414 4 KFHAFMYP--WFGFGHMIPYLHLANKLAEKGHRVTFFLPK 41 (446)
T ss_pred CCEEEEec--CcccchHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 34676665 444566678999999999999999999854
No 440
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=35.23 E-value=67 Score=31.84 Aligned_cols=73 Identities=14% Similarity=0.046 Sum_probs=38.8
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
|+||||++.. | .+...|+..|++.|++|.++.....+... .+.... ..+..........+.+..++|
T Consensus 1 ~~~kVLvlG~-----G--~re~al~~~l~~~g~~v~~~~~~~Npg~~----~~a~~~--~~~~~~d~e~l~~~~~~~~id 67 (435)
T PRK06395 1 MTMKVMLVGS-----G--GREDAIARAIKRSGAILFSVIGHENPSIK----KLSKKY--LFYDEKDYDLIEDFALKNNVD 67 (435)
T ss_pred CceEEEEECC-----c--HHHHHHHHHHHhCCCeEEEEECCCChhhh----hcccce--eecCCCCHHHHHHHHHHhCCC
Confidence 4689999653 2 35677888888889877766432111100 000000 001111222233456678899
Q ss_pred EEEEcc
Q 012132 153 LIVLNT 158 (470)
Q Consensus 153 iV~~~~ 158 (470)
.|++..
T Consensus 68 ~Vi~~~ 73 (435)
T PRK06395 68 IVFVGP 73 (435)
T ss_pred EEEECC
Confidence 998864
No 441
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=35.11 E-value=70 Score=31.23 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=29.4
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
++++||++..+.. .+.....++++.|.+.|++|.++....
T Consensus 4 l~~k~IllgvTGs---iaa~k~~~lv~~L~~~g~~V~vv~T~~ 43 (399)
T PRK05579 4 LAGKRIVLGVSGG---IAAYKALELVRRLRKAGADVRVVMTEA 43 (399)
T ss_pred CCCCeEEEEEeCH---HHHHHHHHHHHHHHhCCCEEEEEECHh
Confidence 4567888776421 224678899999999999999887543
No 442
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=35.09 E-value=65 Score=32.36 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=27.4
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (470)
.+|||++.. ......++++++++|+++.++....+
T Consensus 2 ~~kvLi~~~-------geia~~ii~a~~~~Gi~~v~v~~~~d 36 (472)
T PRK07178 2 IKKILIANR-------GEIAVRIVRACAEMGIRSVAIYSEAD 36 (472)
T ss_pred CcEEEEECC-------cHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 468888853 24678999999999999999886544
No 443
>PLN02928 oxidoreductase family protein
Probab=35.01 E-value=3.3e+02 Score=26.03 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=29.7
Q ss_pred CCHHHHHHhcCEEEE--ccCCcccc---cchHHHHHHhcCCCEEecCCCC
Q 012132 348 LTVAPYLAAIDVLVQ--NSQAWGEC---FGRITIEAMAFQLPVLGTAAGG 392 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~--pS~~~~E~---~g~~~lEAma~G~PvI~s~~~g 392 (470)
.++.++++.||++++ |.. .++ ++-..+..|--|.-+|-+.-|+
T Consensus 218 ~~L~ell~~aDiVvl~lPlt--~~T~~li~~~~l~~Mk~ga~lINvaRG~ 265 (347)
T PLN02928 218 EDIYEFAGEADIVVLCCTLT--KETAGIVNDEFLSSMKKGALLVNIARGG 265 (347)
T ss_pred cCHHHHHhhCCEEEECCCCC--hHhhcccCHHHHhcCCCCeEEEECCCcc
Confidence 578899999999886 443 444 3445777777777666665555
No 444
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=34.95 E-value=2.5e+02 Score=28.20 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=31.1
Q ss_pred ccccEEEEEeecc----------CCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 72 MKSKLVLLVSHEL----------SLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 72 ~~~~kIl~v~~~~----------~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
++.+|||+..... .....++.-..||+++..+|++|++++..
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp 305 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGP 305 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCC
Confidence 5678999876531 11122488999999999999999999843
No 445
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=34.87 E-value=81 Score=26.41 Aligned_cols=34 Identities=24% Similarity=0.068 Sum_probs=24.4
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
-=||+++++... ..-+..+++.|.++|..+..++
T Consensus 82 ~DRVllfs~~~~----~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 82 TDRVLLFSPFST----DEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp T-EEEEEES-S------HHHHHHHHHHHHHT--EEEEE
T ss_pred cceEEEEeCCCC----CHHHHHHHHHHHHCCCCEEEEE
Confidence 358999998653 2357889999999999999999
No 446
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=34.85 E-value=31 Score=22.84 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=14.0
Q ss_pred hHHHHHHhcCCCEEec
Q 012132 373 RITIEAMAFQLPVLGT 388 (470)
Q Consensus 373 ~~~lEAma~G~PvI~s 388 (470)
-.+.|++..|.||++-
T Consensus 15 ~kI~esav~G~pVvAL 30 (58)
T PF11238_consen 15 DKIAESAVMGTPVVAL 30 (58)
T ss_pred hHHHHHHhcCceeEee
Confidence 4689999999999985
No 447
>PRK04155 chaperone protein HchA; Provisional
Probab=34.84 E-value=1.8e+02 Score=26.94 Aligned_cols=41 Identities=17% Similarity=0.318 Sum_probs=29.3
Q ss_pred ccEEEEEeeccC----------CCch-hHHHHHHHHHHHhCCceEEEEecCC
Q 012132 74 SKLVLLVSHELS----------LSGG-PLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 74 ~~kIl~v~~~~~----------~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
.||||+|.+... ..|- +.=+..-...|.+.|++|++.+..+
T Consensus 49 ~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G 100 (287)
T PRK04155 49 GKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSG 100 (287)
T ss_pred CCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 359999988532 2343 3445556788999999999999654
No 448
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=34.84 E-value=93 Score=27.01 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=28.1
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHh-CCceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRG-VGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~-~G~~V~v~~~~ 113 (470)
++|++.+++.-+-.|-.....+||.+|++ .|++|.++-..
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D 74 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDAD 74 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 35666665433333446889999999996 69999988644
No 449
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.76 E-value=2.2e+02 Score=25.34 Aligned_cols=24 Identities=13% Similarity=-0.010 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHhCCceEEEEecC
Q 012132 90 PLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 90 ~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
.-.-..+++.|.++|++|.++...
T Consensus 12 g~iG~~la~~L~~~g~~vi~~~r~ 35 (256)
T PRK12745 12 RGIGLGIARALAAAGFDLAINDRP 35 (256)
T ss_pred chHHHHHHHHHHHCCCEEEEEecC
Confidence 456778899999999999887643
No 450
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=34.72 E-value=53 Score=31.18 Aligned_cols=33 Identities=15% Similarity=0.033 Sum_probs=25.2
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
|+|||+++.. ...-..++..|.+.||+|+++..
T Consensus 1 ~~mkI~IiG~-------G~mG~~~A~~L~~~G~~V~~~~r 33 (341)
T PRK08229 1 MMARICVLGA-------GSIGCYLGGRLAAAGADVTLIGR 33 (341)
T ss_pred CCceEEEECC-------CHHHHHHHHHHHhcCCcEEEEec
Confidence 3578998863 24566778889999999999874
No 451
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.62 E-value=72 Score=29.86 Aligned_cols=40 Identities=23% Similarity=0.022 Sum_probs=28.8
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
|+++||+++.+.. .......+..+.+.|.+.|++|.+...
T Consensus 1 ~~~kkv~lI~n~~-~~~~~~~~~~i~~~L~~~g~~v~v~~~ 40 (305)
T PRK02645 1 MQLKQVIIAYKAG-SSQAKEAAERCAKQLEARGCKVLMGPS 40 (305)
T ss_pred CCcCEEEEEEeCC-CHHHHHHHHHHHHHHHHCCCEEEEecC
Confidence 5677899997641 122235677888889999999988763
No 452
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=34.57 E-value=3.7e+02 Score=24.76 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=27.4
Q ss_pred CHHHHHH--hcCEEEEccCCcccccchHHHHHHh--cCCCEEe
Q 012132 349 TVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLPVLG 387 (470)
Q Consensus 349 ~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma--~G~PvI~ 387 (470)
++.+.++ ..|++|-.|.. ...|.--+++.|+ +..|+|-
T Consensus 96 ~L~e~i~~v~ptvlIG~S~~-~g~ft~evv~~Ma~~~~~PIIF 137 (279)
T cd05312 96 SLLEVVKAVKPTVLIGLSGV-GGAFTEEVVRAMAKSNERPIIF 137 (279)
T ss_pred CHHHHHHhcCCCEEEEeCCC-CCCCCHHHHHHHHhcCCCCEEE
Confidence 5666676 77999988841 4567778888888 5677774
No 453
>PRK09620 hypothetical protein; Provisional
Probab=34.49 E-value=73 Score=28.36 Aligned_cols=22 Identities=18% Similarity=0.033 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhCCceEEEEec
Q 012132 91 LLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
..-..++++|.++|++|+++..
T Consensus 30 fiGs~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 30 TIGRIIAEELISKGAHVIYLHG 51 (229)
T ss_pred HHHHHHHHHHHHCCCeEEEEeC
Confidence 6778899999999999999974
No 454
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=34.49 E-value=2.2e+02 Score=27.34 Aligned_cols=84 Identities=19% Similarity=0.166 Sum_probs=39.8
Q ss_pred ccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcce--eeEec--CChhhHHhh
Q 012132 74 SKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV--QVISA--KGQETINTA 148 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~ 148 (470)
-++||+|-......-- -.-+..|.+-|...|.+|.+-+..+.-... .......|- .+-+. ...+.-...
T Consensus 77 a~~iLlIPEnHTRN~fYl~nv~~L~~I~~~AG~~VriGsl~~~i~e~------~~l~l~~G~~l~lepl~r~~~rl~~~~ 150 (404)
T PF08886_consen 77 AKNILLIPENHTRNTFYLENVAQLKRILRQAGFEVRIGSLDPEITEP------TELELPSGETLTLEPLVRKGGRLGLKG 150 (404)
T ss_dssp -SEEEEEE-S-SS-HHHHHHHHHHHHHHHHTT-EEEEEE--TT--S-------EEEE-SSS-EEEEEE-EEETTEEEETT
T ss_pred cceEEEecCCCcccHHHHHHHHHHHHHHHHcCceEEEcCCCccccCC------eEEecCCCCeEEEEeEEecCCEEeccC
Confidence 4689999876544322 345677888899999999998754331100 001111121 11111 111222266
Q ss_pred cCCcEEEEcccchhh
Q 012132 149 LKADLIVLNTAVAGK 163 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~ 163 (470)
+.||+|..++...+.
T Consensus 151 F~Pc~ILLNNDLS~G 165 (404)
T PF08886_consen 151 FDPCLILLNNDLSAG 165 (404)
T ss_dssp EE-SEEEEES--TT-
T ss_pred CcCcEEEEcCCcccC
Confidence 889999998865443
No 455
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=34.43 E-value=48 Score=32.20 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHhCCceEEEEec
Q 012132 90 PLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 90 ~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
-.-+..++++|+++||+|++++.
T Consensus 9 v~P~l~lA~~L~~~Gh~V~~~~~ 31 (392)
T TIGR01426 9 VNPTLGVVEELVARGHRVTYATT 31 (392)
T ss_pred ccccHHHHHHHHhCCCeEEEEeC
Confidence 35578899999999999999995
No 456
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=34.34 E-value=4.1e+02 Score=25.15 Aligned_cols=76 Identities=20% Similarity=0.191 Sum_probs=47.2
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc--------------cCCHHHHHHhcCEEEE--ccCCccccc
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--------------TLTVAPYLAAIDVLVQ--NSQAWGECF 371 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~--------------~~~~~~~~~~aDv~v~--pS~~~~E~~ 371 (470)
+..+-|+|-| .-...+.+.++.+|.. |..... ..++.++++.||++++ |.. .|+-
T Consensus 142 gkTvGIiG~G-----~IG~~va~~l~afgm~--v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT--~eT~ 212 (324)
T COG0111 142 GKTVGIIGLG-----RIGRAVAKRLKAFGMK--VIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLT--PETR 212 (324)
T ss_pred CCEEEEECCC-----HHHHHHHHHHHhCCCe--EEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCC--cchh
Confidence 4467777777 4666666677766642 333221 1568999999999875 665 7776
Q ss_pred chH---HHHHHhcCCCEEecCCCC
Q 012132 372 GRI---TIEAMAFQLPVLGTAAGG 392 (470)
Q Consensus 372 g~~---~lEAma~G~PvI~s~~~g 392 (470)
|+. .+..|--|.-+|-+.-|+
T Consensus 213 g~i~~~~~a~MK~gailIN~aRG~ 236 (324)
T COG0111 213 GLINAEELAKMKPGAILINAARGG 236 (324)
T ss_pred cccCHHHHhhCCCCeEEEECCCcc
Confidence 654 555665566444443444
No 457
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=34.28 E-value=1.2e+02 Score=26.13 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCc---------ccccchHHHHHHhcCCCEEecCCC
Q 012132 324 FESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAW---------GECFGRITIEAMAFQLPVLGTAAG 391 (470)
Q Consensus 324 ~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~---------~E~~g~~~lEAma~G~PvI~s~~~ 391 (470)
+...+.+..+.+|.. +.+....++ +..+|.+|+|.-.. ..++.-.+.++...|+||++.-.|
T Consensus 11 n~~~~~~~l~~~g~~--v~~~~~~~~----l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G 81 (199)
T PRK13181 11 NLRSVANALKRLGVE--AVVSSDPEE----IAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLG 81 (199)
T ss_pred hHHHHHHHHHHCCCc--EEEEcChHH----hccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHh
Confidence 456666777777753 555543222 45688888887410 012334566778899999987544
No 458
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=34.19 E-value=71 Score=27.06 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=25.9
Q ss_pred cEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEe
Q 012132 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
|||+++-.. ..|. +..+..+++.|.. |++|.++-
T Consensus 1 MkilIvY~S--~~G~T~~iA~~Ia~~l~~-g~~v~~~~ 35 (177)
T PRK11104 1 MKTLILYSS--RDGQTRKIASYIASELKE-GIQCDVVN 35 (177)
T ss_pred CcEEEEEEC--CCChHHHHHHHHHHHhCC-CCeEEEEE
Confidence 577777643 3454 7889999999988 99998875
No 459
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=34.01 E-value=74 Score=26.43 Aligned_cols=36 Identities=11% Similarity=-0.076 Sum_probs=26.1
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
|++|.++++.-..--....+..|.+.|+++|+ .+++
T Consensus 1 ~~~I~V~gss~~~~~~~~~A~~lg~~La~~g~--~lv~ 36 (159)
T TIGR00725 1 MVQIGVIGSSNKSEELYEIAYRLGKELAKKGH--ILIN 36 (159)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHHHCCC--EEEc
Confidence 46899998765322335789999999999997 4554
No 460
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=34.00 E-value=1.7e+02 Score=22.25 Aligned_cols=64 Identities=25% Similarity=0.216 Sum_probs=39.5
Q ss_pred chhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChh-hHH---hhcCCcEEEEcccc
Q 012132 88 GGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE-TIN---TALKADLIVLNTAV 160 (470)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~DiV~~~~~~ 160 (470)
|..+....+++.|.+.|.+|.++..... ....+...++.++...... ..+ ...+.|.|++.+..
T Consensus 5 G~g~~~~~i~~~L~~~~~~vvvid~d~~---------~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~ 72 (116)
T PF02254_consen 5 GYGRIGREIAEQLKEGGIDVVVIDRDPE---------RVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDD 72 (116)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESSHH---------HHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSS
T ss_pred cCCHHHHHHHHHHHhCCCEEEEEECCcH---------HHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCC
Confidence 4558899999999997779999975432 1334445566665544332 111 23678877776533
No 461
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=33.98 E-value=3.3e+02 Score=23.91 Aligned_cols=110 Identities=14% Similarity=0.138 Sum_probs=55.4
Q ss_pred eEE-EEEeCCCCcChHHHHHHHHHHHhc---CCCCcEEEecccCC----HHHHHHhc-------CEEEEccCCcccccch
Q 012132 309 VHA-VIIGSDMNAQTKFESELRNYVMQK---KIQDRVHFVNKTLT----VAPYLAAI-------DVLVQNSQAWGECFGR 373 (470)
Q Consensus 309 ~~l-~ivG~g~~~~~~~~~~l~~~~~~~---~l~~~V~~~g~~~~----~~~~~~~a-------Dv~v~pS~~~~E~~g~ 373 (470)
.++ +++|+... +.+.+|..+++++ ++.-.|++.|..++ +.+++... .++..|.-
T Consensus 108 ~riVvFvGSpi~---e~ekeLv~~akrlkk~~Vaidii~FGE~~~~~e~l~~fida~N~~~~gshlv~Vppg-------- 176 (259)
T KOG2884|consen 108 QRIVVFVGSPIE---ESEKELVKLAKRLKKNKVAIDIINFGEAENNTEKLFEFIDALNGKGDGSHLVSVPPG-------- 176 (259)
T ss_pred eEEEEEecCcch---hhHHHHHHHHHHHHhcCeeEEEEEeccccccHHHHHHHHHHhcCCCCCceEEEeCCC--------
Confidence 444 45666432 2345676666655 33334666775422 22222222 23334432
Q ss_pred HHHHHHhcCCCEEecCCCCcce-eeec-CceeeeecCCCCChHHHHHHHHHHHhCHHHHH
Q 012132 374 ITIEAMAFQLPVLGTAAGGTTE-IVVN-GTTGLLHPVGKEGITPLAKNIVKLATHVERRL 431 (470)
Q Consensus 374 ~~lEAma~G~PvI~s~~~g~~e-~v~~-~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~ 431 (470)
.+++=...-.|++..+-|+..- ...+ ...-|=++|.+ -.+||.+|.--++....|+
T Consensus 177 ~~L~d~l~ssPii~ge~g~a~~~~~a~g~~f~fgvdp~~--DPELAlALRlSMEEer~rQ 234 (259)
T KOG2884|consen 177 PLLSDALLSSPIIQGEDGGAAAGLGANGMDFEFGVDPED--DPELALALRLSMEEERARQ 234 (259)
T ss_pred ccHHHHhhcCceeccCcccccccccccccccccCCCccc--CHHHHHHHHhhHHHHHHHH
Confidence 2555556678999887554322 2211 12223344554 5789999876655443333
No 462
>PRK05993 short chain dehydrogenase; Provisional
Probab=33.75 E-value=69 Score=29.23 Aligned_cols=24 Identities=17% Similarity=-0.122 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHhCCceEEEEecC
Q 012132 90 PLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 90 ~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
.-.-..+++.|.++|++|.+....
T Consensus 14 ggiG~~la~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 14 SGIGAYCARALQSDGWRVFATCRK 37 (277)
T ss_pred cHHHHHHHHHHHHCCCEEEEEECC
Confidence 345567888999999999887643
No 463
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=33.59 E-value=1.8e+02 Score=25.82 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=29.1
Q ss_pred EEEEEeeccCCCch--hHHHHHHHHHHHhCCceEEEEecCCC
Q 012132 76 LVLLVSHELSLSGG--PLLLMELAFLLRGVGTKVNWITIQKP 115 (470)
Q Consensus 76 kIl~v~~~~~~~G~--~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (470)
+|.++++. .||. .....++..+|+.+|+.|.++-..-+
T Consensus 3 ~iIVvTSG--KGGVGKTTttAnig~aLA~~GkKv~liD~DiG 42 (272)
T COG2894 3 RIIVVTSG--KGGVGKTTTTANIGTALAQLGKKVVLIDFDIG 42 (272)
T ss_pred eEEEEecC--CCCcCccchhHHHHHHHHHcCCeEEEEecCcC
Confidence 67777743 3554 47788999999999999999976544
No 464
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=33.45 E-value=72 Score=29.92 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=25.4
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|.+|||+++.. | ..-..++..|.+.||+|+++...
T Consensus 3 ~~~m~I~IiG~-----G--aiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 3 SETPRIGIIGT-----G--AIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CcCcEEEEECC-----C--HHHHHHHHHHHHCCCeEEEEEeC
Confidence 45689998853 2 24455677788899999999754
No 465
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=33.38 E-value=3.2e+02 Score=23.71 Aligned_cols=107 Identities=13% Similarity=0.142 Sum_probs=58.1
Q ss_pred EEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHH-HHHHHHHHHhcCCCCcEEEecccCCHH
Q 012132 273 FAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKF-ESELRNYVMQKKIQDRVHFVNKTLTVA 351 (470)
Q Consensus 273 i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~-~~~l~~~~~~~~l~~~V~~~g~~~~~~ 351 (470)
|+-.|++.-..=++++++--+ ..+++.+.++|+|..-+|+. +....+..++..
T Consensus 7 ~ik~GniGts~v~dlllDErA-----------dRedi~vrVvgsgaKM~Pe~veaav~~~~e~~~--------------- 60 (277)
T COG1927 7 FIKCGNIGTSPVVDLLLDERA-----------DREDIEVRVVGSGAKMDPECVEAAVTEMLEEFN--------------- 60 (277)
T ss_pred EEEecccchHHHHHHHHHhhc-----------ccCCceEEEeccccccChHHHHHHHHHHHHhcC---------------
Confidence 445666654444444444322 33899999999985444321 222333333322
Q ss_pred HHHHhcCEEEEccCCcccccchHHHHHHh-cCCCEE-ecCCCCc--ceeeecCceeeeecCCC
Q 012132 352 PYLAAIDVLVQNSQAWGECFGRITIEAMA-FQLPVL-GTAAGGT--TEIVVNGTTGLLHPVGK 410 (470)
Q Consensus 352 ~~~~~aDv~v~pS~~~~E~~g~~~lEAma-~G~PvI-~s~~~g~--~e~v~~~~~G~l~~~~d 410 (470)
.|+.++-|-+..-+-|-..-|.++ +|+|+| .+|.+|. .+-+++.+.|+++-..|
T Consensus 61 -----pDfvi~isPNpaaPGP~kARE~l~~s~~PaiiigDaPg~~vkdeleeqGlGYIivk~D 118 (277)
T COG1927 61 -----PDFVIYISPNPAAPGPKKAREILSDSDVPAIIIGDAPGLKVKDELEEQGLGYIIVKAD 118 (277)
T ss_pred -----CCEEEEeCCCCCCCCchHHHHHHhhcCCCEEEecCCccchhHHHHHhcCCeEEEecCC
Confidence 234443333113445566677776 688866 4566663 45555666788776654
No 466
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=33.22 E-value=91 Score=21.12 Aligned_cols=35 Identities=31% Similarity=0.231 Sum_probs=24.6
Q ss_pred EeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 80 VSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 80 v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
+.+.++.-.+.....++++...+.|++...+|...
T Consensus 4 ~Ht~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 4 VHSDYSLLDGALSPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred cccCCccccccCCHHHHHHHHHHcCCCEEEEeeCC
Confidence 33444432333457889999999999999999665
No 467
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=33.19 E-value=90 Score=27.78 Aligned_cols=37 Identities=19% Similarity=0.030 Sum_probs=27.8
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
|+|+.+... +-.|-...+..|++.|.++|+.|.++-.
T Consensus 1 m~vi~ivG~-~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 1 MRAIGVIGF-KDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred CeEEEEECC-CCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 466666654 3344468889999999999999999963
No 468
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=33.14 E-value=70 Score=29.79 Aligned_cols=34 Identities=15% Similarity=0.038 Sum_probs=26.7
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
|||++++.+.+. .....+.+++.++||+|.++..
T Consensus 1 m~~~i~~~~~s~----~s~~~~~~a~~~~g~~v~~i~~ 34 (300)
T PRK10446 1 MKIAILSRDGTL----YSCKRLREAAIQRGHLVEILDP 34 (300)
T ss_pred CeEEEEecCCcc----hhHHHHHHHHHHcCCeEEEEeh
Confidence 578888866543 3467889999999999999963
No 469
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=33.10 E-value=80 Score=28.88 Aligned_cols=30 Identities=30% Similarity=0.344 Sum_probs=23.8
Q ss_pred CchhHHHHHHHHHHHhCCceEEEEecCCCC
Q 012132 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (470)
Q Consensus 87 ~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (470)
||....-..|...|.+.||+|++++.....
T Consensus 5 GgTGlIG~~L~~~L~~~gh~v~iltR~~~~ 34 (297)
T COG1090 5 GGTGLIGRALTARLRKGGHQVTILTRRPPK 34 (297)
T ss_pred ccccchhHHHHHHHHhCCCeEEEEEcCCcc
Confidence 344577788999999999999999966543
No 470
>KOG2648 consensus Diphthamide biosynthesis protein [Translation, ribosomal structure and biogenesis]
Probab=33.07 E-value=1.7e+02 Score=28.68 Aligned_cols=59 Identities=17% Similarity=0.203 Sum_probs=36.4
Q ss_pred CceEEEEEeC-CCCcChHHHHHHHHHHHhcCCCCcEEEeccc-CCHHHHHHhcCEEEEccC
Q 012132 307 PSVHAVIIGS-DMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNSQ 365 (470)
Q Consensus 307 ~~~~l~ivG~-g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~-~~~~~~~~~aDv~v~pS~ 365 (470)
-+.-=+|+|. |-.+...-.++|+++++..|....+..+|.. ..-.+-+...|+||+-+-
T Consensus 266 A~~iGlivGTLG~qg~~~vl~~L~~~~~~~Gkk~y~l~~g~inPaKLAnF~eIDvfV~iaC 326 (453)
T KOG2648|consen 266 ARTIGLIVGTLGRQGNREVLEHLRKLLKAAGKKSYVLALGEINPAKLANFPEIDVFVQIAC 326 (453)
T ss_pred CCeEEEEEecccccCCHHHHHHHHHHHHHcCCceEEEEecCCCHHHhcCCccccEEEEEeC
Confidence 3444556665 3233334567777788877776667777764 233344566999997554
No 471
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=33.00 E-value=1e+02 Score=26.77 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=30.1
Q ss_pred cEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecCC
Q 012132 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
|||+.++-.....|. ...+...++.+.+.|.||.++....
T Consensus 1 mki~~I~gs~r~~G~t~~l~~~~~~g~~~~G~E~~~i~v~~ 41 (207)
T COG0655 1 MKILGINGSPRSNGNTAKLAEAVLEGAEEAGAEVEIIRLPE 41 (207)
T ss_pred CeeeEEEecCCCCCcHHHHHHHHHHHHHHcCCEEEEEEecC
Confidence 466666654443444 7889999999999999999998554
No 472
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=32.95 E-value=95 Score=26.56 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=26.4
Q ss_pred cEEEEEeeccCCCc-hhHHHHHHHHHHHh-CCceEEEEecCC
Q 012132 75 KLVLLVSHELSLSG-GPLLLMELAFLLRG-VGTKVNWITIQK 114 (470)
Q Consensus 75 ~kIl~v~~~~~~~G-~~~~~~~l~~~L~~-~G~~V~v~~~~~ 114 (470)
|||++..+ || +.....++++.|.+ .|++|.++....
T Consensus 2 k~IllgVT----Gsiaa~ka~~l~~~L~k~~g~~V~vv~T~~ 39 (185)
T PRK06029 2 KRLIVGIS----GASGAIYGVRLLQVLRDVGEIETHLVISQA 39 (185)
T ss_pred CEEEEEEE----CHHHHHHHHHHHHHHHhhcCCeEEEEECHH
Confidence 56665554 22 25778999999999 599999998554
No 473
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=32.90 E-value=3e+02 Score=26.69 Aligned_cols=86 Identities=17% Similarity=0.190 Sum_probs=53.6
Q ss_pred ccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcE-EEecccCCHHHHHHh--
Q 012132 280 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV-HFVNKTLTVAPYLAA-- 356 (470)
Q Consensus 280 ~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V-~~~g~~~~~~~~~~~-- 356 (470)
...++++.+.+..+++. | +.+++++. .....+++.... ..+ .+.|. +.+.++.+.
T Consensus 34 aa~~n~~~l~~q~~~f~----------p--~~v~i~~~-----~~~~~l~~~l~~----~~~~v~~G~-~~~~~l~~~~~ 91 (385)
T PRK05447 34 SAGKNVELLAEQAREFR----------P--KYVVVADE-----EAAKELKEALAA----AGIEVLAGE-EGLCELAALPE 91 (385)
T ss_pred EcCCCHHHHHHHHHHhC----------C--CEEEEcCH-----HHHHHHHHhhcc----CCceEEECh-hHHHHHhcCCC
Confidence 34678888887776541 4 56666764 345555543321 123 34443 567777664
Q ss_pred cCEEEEccCCcccccchHHHHHHhcCCCEEecC
Q 012132 357 IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389 (470)
Q Consensus 357 aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~ 389 (470)
+|++|...-. ..|. ...++|+..|++|...+
T Consensus 92 vD~Vv~Ai~G-~aGl-~ptl~Ai~aGK~VaLAN 122 (385)
T PRK05447 92 ADVVVAAIVG-AAGL-LPTLAAIRAGKRIALAN 122 (385)
T ss_pred CCEEEEeCcC-cccH-HHHHHHHHCCCcEEEeC
Confidence 5888887751 2233 56889999999999865
No 474
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=32.86 E-value=5.7e+02 Score=27.52 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=52.1
Q ss_pred cCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCC-CcEEEecc------------------------cCCHHHHHHhcCE
Q 012132 305 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNK------------------------TLTVAPYLAAIDV 359 (470)
Q Consensus 305 ~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-~~V~~~g~------------------------~~~~~~~~~~aDv 359 (470)
+..+.++++.|.|. -.--+-++....|+. +++.+... ...+.+.++.+|+
T Consensus 182 ~~~~~~iv~~GaGa-----ag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v 256 (752)
T PRK07232 182 KIEDVKIVVSGAGA-----AAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADV 256 (752)
T ss_pred ChhhcEEEEECccH-----HHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCE
Confidence 55788999999883 333444555556764 35544320 1357788888999
Q ss_pred EEEccCCcccccchHHHHHHhcCCCEEec
Q 012132 360 LVQNSQAWGECFGRITIEAMAFQLPVLGT 388 (470)
Q Consensus 360 ~v~pS~~~~E~~g~~~lEAma~G~PvI~s 388 (470)
|+-.|. .-.|.--+++.|+ ..|+|-.
T Consensus 257 ~iG~s~--~g~~~~~~v~~M~-~~piifa 282 (752)
T PRK07232 257 FLGLSA--AGVLTPEMVKSMA-DNPIIFA 282 (752)
T ss_pred EEEcCC--CCCCCHHHHHHhc-cCCEEEe
Confidence 999887 6667788899997 4788843
No 475
>PLN02712 arogenate dehydrogenase
Probab=32.85 E-value=2.1e+02 Score=30.31 Aligned_cols=35 Identities=17% Similarity=-0.024 Sum_probs=26.0
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
..++|+|.+|.. | ..-..+++.|.+.|++|.++..
T Consensus 49 ~~~~~kIgIIG~-----G--~mG~slA~~L~~~G~~V~~~dr 83 (667)
T PLN02712 49 NTTQLKIAIIGF-----G--NYGQFLAKTLISQGHTVLAHSR 83 (667)
T ss_pred cCCCCEEEEEcc-----C--HHHHHHHHHHHHCCCEEEEEeC
Confidence 345679999862 2 4566788999999999877654
No 476
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=32.84 E-value=4.9e+02 Score=25.66 Aligned_cols=99 Identities=12% Similarity=0.055 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEe-----------------
Q 012132 282 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFV----------------- 344 (470)
Q Consensus 282 ~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~----------------- 344 (470)
..|.+..++++-+... ....+..+-++.|+|...... ....+++++.++.|+.-+..+.
T Consensus 132 ~~G~~~a~~al~~~~~---~~~~~~~~~~VNlig~~~~~~-~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~ 207 (428)
T cd01965 132 ETGYDNAVKAIIEQLA---KPSEVKKNGKVNLLPGFPLTP-GDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLT 207 (428)
T ss_pred HHHHHHHHHHHHHHHh---cccCCCCCCeEEEECCCCCCc-cCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccC
Confidence 4677777777654221 110001334677777543221 2478999999999998766653
Q ss_pred -cccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHh--cCCCEEecC
Q 012132 345 -NKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLPVLGTA 389 (470)
Q Consensus 345 -g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma--~G~PvI~s~ 389 (470)
|. ..+.++-+ .|.+-+.-+ ..++..+.|+|. +|+|-+...
T Consensus 208 ~gg-~~~e~i~~~~~A~lniv~~----~~~~~~~a~~L~e~~GiP~~~~~ 252 (428)
T cd01965 208 KGG-TTLEEIRDAGNAKATIALG----EYSGRKAAKALEEKFGVPYILFP 252 (428)
T ss_pred CCC-CcHHHHHHhccCcEEEEEC----hhhhHHHHHHHHHHHCCCeeecC
Confidence 21 34444433 333333322 224667777776 899998765
No 477
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=32.81 E-value=1.4e+02 Score=29.17 Aligned_cols=37 Identities=19% Similarity=-0.004 Sum_probs=27.1
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
..++|+|+++. |....-..+++.|.++||+|.+++..
T Consensus 57 ~~~~~kVLVtG------atG~IG~~l~~~Ll~~G~~V~~l~R~ 93 (390)
T PLN02657 57 EPKDVTVLVVG------ATGYIGKFVVRELVRRGYNVVAVARE 93 (390)
T ss_pred CCCCCEEEEEC------CCcHHHHHHHHHHHHCCCEEEEEEec
Confidence 34567887764 33456778888899999999998744
No 478
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=32.79 E-value=1.1e+02 Score=29.85 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=26.3
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCC
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (470)
++|+|+++.. | .....++.++.++|++|.++...+.
T Consensus 11 ~~~~ilIiG~-----g--~~~~~~~~a~~~~G~~v~~~~~~~~ 46 (395)
T PRK09288 11 SATRVMLLGS-----G--ELGKEVAIEAQRLGVEVIAVDRYAN 46 (395)
T ss_pred CCCEEEEECC-----C--HHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4578998753 2 3456678889999999998886543
No 479
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=32.74 E-value=2.3e+02 Score=27.85 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=46.1
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCCh---hhHHhhc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ---ETINTAL 149 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 149 (470)
..+|++++.. +.....+++.|.+.|.+|............ .. .....+.. +..++..... ....+..
T Consensus 273 ~Gkrv~i~gd-------~~~~~~l~~~L~elGm~~v~~~t~~~~~~~-~~-~~~~~l~~-~~~v~~~~d~~~l~~~i~~~ 342 (407)
T TIGR01279 273 RGKKIFFFGD-------NLLELPLARFLKRCGMEVVECGTPYIHRRF-HA-AELALLEG-GVRIVEQPDFHRQLQRIRAT 342 (407)
T ss_pred CCCEEEEECC-------chHHHHHHHHHHHCCCEEEEecCCCCChHH-HH-HHHhhcCC-CCeEEeCCCHHHHHHHHHhc
Confidence 4678877653 357899999999999999777644332211 01 11122221 3444443333 3555778
Q ss_pred CCcEEEEcc
Q 012132 150 KADLIVLNT 158 (470)
Q Consensus 150 ~~DiV~~~~ 158 (470)
+||+++.++
T Consensus 343 ~pDllig~~ 351 (407)
T TIGR01279 343 RPDLVVTGL 351 (407)
T ss_pred CCCEEecCc
Confidence 999999987
No 480
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=32.72 E-value=95 Score=28.28 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=27.0
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (470)
||||+...+... +.-+..|+++|.+.| +|+|+++...+
T Consensus 1 M~ILlTNDDGi~---apGi~aL~~al~~~g-~V~VvAP~~eq 38 (266)
T PRK13934 1 MKILVTNDDGVH---SPGLRLLYEFVSPLG-EVDVVAPETPK 38 (266)
T ss_pred CeEEEEcCCCCC---CHHHHHHHHHHHhCC-cEEEEccCCCC
Confidence 688888775322 244778888998887 89998866544
No 481
>CHL00194 ycf39 Ycf39; Provisional
Probab=32.55 E-value=68 Score=30.07 Aligned_cols=33 Identities=12% Similarity=0.069 Sum_probs=25.0
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|||+++. |....-..+++.|.++||+|++++..
T Consensus 1 MkIlVtG------atG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVIG------ATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CEEEEEC------CCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 4677653 33567778899999999999999854
No 482
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=32.53 E-value=1.9e+02 Score=26.57 Aligned_cols=89 Identities=16% Similarity=0.157 Sum_probs=50.3
Q ss_pred HHHHHhcCEEEEccCCcccccchHHHHHHhc-CCCEEecCCCCcceeee--------------cC--ceeeeecCCCCCh
Q 012132 351 APYLAAIDVLVQNSQAWGECFGRITIEAMAF-QLPVLGTAAGGTTEIVV--------------NG--TTGLLHPVGKEGI 413 (470)
Q Consensus 351 ~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~-G~PvI~s~~~g~~e~v~--------------~~--~~G~l~~~~d~~~ 413 (470)
..-++.||++|..... .|+|-..++++... +.++|... .++.-+-. ++ .--+..++.+ .
T Consensus 47 ~~~l~~Adliv~~G~~-~e~w~~k~~~~~~~~~~~~v~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~--~ 122 (282)
T cd01017 47 IARIADADVFVYNGLG-METWAEKVLKSLQNKKLKVVEAS-KGIKLLKAGGAEHDHDHSHSHHHGDYDPHVWLSPVL--A 122 (282)
T ss_pred HHHHHhCCEEEEcCcc-hHHHHHHHHHhcccCCceEEECC-CCccccccccccccccccccccCCCCCCccccCHHH--H
Confidence 3457889999877652 67766677776532 23444321 12211100 00 1224455555 6
Q ss_pred HHHHHHHHHHHh--CHHHHHHHHHHHHHHHHH
Q 012132 414 TPLAKNIVKLAT--HVERRLTMGKRGYERVKE 443 (470)
Q Consensus 414 ~~la~~i~~ll~--~~~~~~~~~~~a~~~~~~ 443 (470)
..+++.|.+.+. ||+......+|+.++..+
T Consensus 123 ~~~a~~Ia~~L~~~dP~~~~~y~~N~~~~~~~ 154 (282)
T cd01017 123 IQQVENIKDALIKLDPDNKEYYEKNAAAYAKK 154 (282)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 777888877776 677667777777666544
No 483
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=32.29 E-value=79 Score=28.76 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=26.5
Q ss_pred cEEEEEeeccCCCchh--HHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGGP--LLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~--~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|+|.+. ..||.. ..+.+||.+|+++|+.|.++-.+
T Consensus 1 ~~i~~~----gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 1 MILAVY----GKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred CEEEEE----cCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 455555 356663 67899999999999999988643
No 484
>PRK12861 malic enzyme; Reviewed
Probab=32.17 E-value=5e+02 Score=27.97 Aligned_cols=76 Identities=17% Similarity=0.262 Sum_probs=51.7
Q ss_pred cCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCC-CcEEEec--------c----------------cCCHHHHHHhcCE
Q 012132 305 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVN--------K----------------TLTVAPYLAAIDV 359 (470)
Q Consensus 305 ~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-~~V~~~g--------~----------------~~~~~~~~~~aDv 359 (470)
+..+.++++.|.|. -.--+-++....|+. +++.+.. . ...+.+.+..+|+
T Consensus 186 ~l~d~~iv~~GAGa-----Ag~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~eai~~adv 260 (764)
T PRK12861 186 SIKEVKVVTSGAGA-----AALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQETDARTLAEVIGGADV 260 (764)
T ss_pred ChhHcEEEEECHhH-----HHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHHHhcCCE
Confidence 55688999999883 333344555556764 3555433 0 1357778888999
Q ss_pred EEEccCCcccccchHHHHHHhcCCCEEec
Q 012132 360 LVQNSQAWGECFGRITIEAMAFQLPVLGT 388 (470)
Q Consensus 360 ~v~pS~~~~E~~g~~~lEAma~G~PvI~s 388 (470)
|+-.|. ...|.--++++|+- .|+|-.
T Consensus 261 liG~S~--~g~ft~e~v~~Ma~-~PIIFa 286 (764)
T PRK12861 261 FLGLSA--GGVLKAEMLKAMAA-RPLILA 286 (764)
T ss_pred EEEcCC--CCCCCHHHHHHhcc-CCEEEE
Confidence 998887 66777788888876 787743
No 485
>PRK06180 short chain dehydrogenase; Provisional
Probab=32.15 E-value=74 Score=29.03 Aligned_cols=23 Identities=17% Similarity=-0.071 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHhCCceEEEEec
Q 012132 90 PLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 90 ~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
...-..+++.|.++|++|.++..
T Consensus 14 ggiG~~la~~l~~~G~~V~~~~r 36 (277)
T PRK06180 14 SGFGRALAQAALAAGHRVVGTVR 36 (277)
T ss_pred ChHHHHHHHHHHhCcCEEEEEeC
Confidence 34667788889999999988764
No 486
>PRK10481 hypothetical protein; Provisional
Probab=32.05 E-value=2.9e+02 Score=24.53 Aligned_cols=90 Identities=11% Similarity=-0.017 Sum_probs=45.3
Q ss_pred ccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEec---cc---CCHHHH
Q 012132 280 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN---KT---LTVAPY 353 (470)
Q Consensus 280 ~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g---~~---~~~~~~ 353 (470)
.|.+++..++.|+. ..-++-|+.... +..+...+...+.|.+ +.+.+ +. +.+.+.
T Consensus 114 ~P~~~i~~lv~Al~-------------~g~riGVitP~~----~qi~~~~~kw~~~G~~--v~~~~aspy~~~~~~l~~a 174 (224)
T PRK10481 114 EPSRILPPLVAAIV-------------GGHQVGVIVPVE----EQLAQQAQKWQVLQKP--PVFALASPYHGSEEELIDA 174 (224)
T ss_pred CchhhHHHHHHHhc-------------CCCeEEEEEeCH----HHHHHHHHHHHhcCCc--eeEeecCCCCCCHHHHHHH
Confidence 46667767776664 345677777642 2223333333334554 33333 11 123222
Q ss_pred H-----HhcCEEEEccCCcccccchHHHHHHhcCCCEEecCC
Q 012132 354 L-----AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA 390 (470)
Q Consensus 354 ~-----~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~ 390 (470)
- ..+|++++-.. .-+..+.-.=.-..|+|||.++.
T Consensus 175 a~~L~~~gaD~Ivl~C~--G~~~~~~~~le~~lg~PVI~~n~ 214 (224)
T PRK10481 175 GKELLDQGADVIVLDCL--GYHQRHRDLLQKALDVPVLLSNV 214 (224)
T ss_pred HHHhhcCCCCEEEEeCC--CcCHHHHHHHHHHHCcCEEcHHH
Confidence 1 35888886654 11112222223468999998864
No 487
>PRK07236 hypothetical protein; Provisional
Probab=31.92 E-value=65 Score=31.19 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=27.8
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
.|+.++|++|.- ...-..+|..|++.|++|+|+=..
T Consensus 3 ~~~~~~ViIVGa-------G~aGl~~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 3 HMSGPRAVVIGG-------SLGGLFAALLLRRAGWDVDVFERS 38 (386)
T ss_pred CCCCCeEEEECC-------CHHHHHHHHHHHhCCCCEEEEecC
Confidence 367789998862 245677889999999999999743
No 488
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=31.82 E-value=4.7e+02 Score=25.76 Aligned_cols=61 Identities=20% Similarity=0.300 Sum_probs=36.4
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEec
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (470)
.+|+++.+ .-.|=...+..|+..|..+|+.|.+++.+... ......+.......+++++..
T Consensus 242 ~vI~LVGp--tGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R--iaAvEQLk~yae~lgipv~v~ 302 (436)
T PRK11889 242 QTIALIGP--TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR--IGTVQQLQDYVKTIGFEVIAV 302 (436)
T ss_pred cEEEEECC--CCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc--hHHHHHHHHHhhhcCCcEEec
Confidence 46777665 11222578889999999999999998865432 112222333333455555543
No 489
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=31.57 E-value=1.3e+02 Score=22.33 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=27.0
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
+++|||+++...- +....+..+-+.+.++|.++.+-..
T Consensus 2 ~~~~ILl~C~~G~--sSS~l~~k~~~~~~~~gi~~~v~a~ 39 (95)
T TIGR00853 2 NETNILLLCAAGM--STSLLVNKMNKAAEEYGVPVKIAAG 39 (95)
T ss_pred CccEEEEECCCch--hHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 5679999986421 1235667788888889999887763
No 490
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=31.51 E-value=67 Score=32.10 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=32.0
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHh---------CCceEEEEecCCC
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRG---------VGTKVNWITIQKP 115 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~---------~G~~V~v~~~~~~ 115 (470)
..+++++..+....||.++...+.+..+.. .|++|.+++.+..
T Consensus 33 ~~~~~~~~~~~~~~gg~er~~v~~~~~l~s~~~~lg~~d~G~qV~~l~~h~~ 84 (495)
T KOG0853|consen 33 PFEHVTFIHPDLGIGGAERLVVDAAVHLLSGQDVLGLPDTGGQVVYLTSHED 84 (495)
T ss_pred cchhheeeccccccCchHHHhHHHHHHHHhcccccCCCCCCceEEEEehhhh
Confidence 345788888877778878777777777777 8888888885543
No 491
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=31.46 E-value=1e+02 Score=28.09 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=32.2
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
.+++..+++.-+--|-.....+||.+|++.|..|-++-.+
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD 95 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDAD 95 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCc
Confidence 4677777765555566899999999999999999999743
No 492
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=31.44 E-value=5.8e+02 Score=26.02 Aligned_cols=118 Identities=9% Similarity=-0.028 Sum_probs=59.7
Q ss_pred HHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEE-E----EeecccCCCHHHHHH
Q 012132 216 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFA-I----INSVSRGKGQDLFLH 290 (470)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~-~----vGrl~~~Kg~~~ll~ 290 (470)
.+.+.+.+.+..-.+++..|.+..-.+..--+-... -.+++++.+++.+..++. . .| +...|.+..++
T Consensus 129 ~L~e~I~~~~~~y~P~~I~V~tTC~~evIGDDi~a~-----i~~~~~~~~~p~~~pVi~v~TpgF~G--s~~~Gyd~a~~ 201 (515)
T TIGR01286 129 NMVDGLQNCYALYKPKMIAVSTTCMAEVIGDDLNAF-----IGNAKKEGFIPDDFPVPFAHTPSFVG--SHITGYDNMFK 201 (515)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHhhccHHHH-----HHHHHHhcCCCCCCceEEeeCCCCcc--cHHHHHHHHHH
Confidence 334444434443345566666665555433222111 233455555554443332 1 24 34578888888
Q ss_pred HHHHHHHHHHhh-cccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcE
Q 012132 291 SFYESLELIKEK-KLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV 341 (470)
Q Consensus 291 a~~~l~~~l~~~-~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V 341 (470)
++-+....-... ..+.++-++-|+|+-... +....+++++.+.+|+.-++
T Consensus 202 ail~~l~~~~~~~~~~~~~~~VNii~g~~~~-~gd~~eikrlL~~~Gi~~~~ 252 (515)
T TIGR01286 202 GILEYFTKGSMDDKVVGSNGKINIIPGFETY-IGNFREIKRILSLMGVGYTL 252 (515)
T ss_pred HHHHHHhhcccccccCCCCCeEEEECCCCCC-chhHHHHHHHHHHcCCCeEE
Confidence 876432211100 001234567778633211 23678999999999996444
No 493
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=31.40 E-value=1.2e+02 Score=23.45 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=31.4
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCC
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLT 349 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~ 349 (470)
-.+++.|+|+-+.. .....+++++.+.+-.+.+.|....++
T Consensus 68 Y~iklAivGD~s~~--~~S~~l~dfi~EsN~G~~~~F~~~~~e 108 (113)
T PF13788_consen 68 YRIKLAIVGDFSAY--ATSKSLRDFIYESNRGNHFFFVPDEEE 108 (113)
T ss_pred hceeEEEEEccccc--ccchhHHHHHHHhcCCCeEEEECCHHH
Confidence 56899999986432 147889999999888888988876543
No 494
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=31.39 E-value=1e+02 Score=30.53 Aligned_cols=74 Identities=19% Similarity=0.179 Sum_probs=39.2
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
++||||++.. |+ +-+.|+..|.+.++-..+++..+...... .. ......+..........+.+..++|
T Consensus 3 ~~~kvLviG~-----g~--rehal~~~~~~~~~~~~~~~~pgn~g~~~----~~-~~~~~~~~~~d~~~l~~~a~~~~iD 70 (426)
T PRK13789 3 VKLKVLLIGS-----GG--RESAIAFALRKSNLLSELKVFPGNGGFPD----DE-LLPADSFSILDKSSVQSFLKSNPFD 70 (426)
T ss_pred CCcEEEEECC-----CH--HHHHHHHHHHhCCCCCEEEEECCchHHhc----cc-cccccCcCcCCHHHHHHHHHHcCCC
Confidence 3589999974 32 56678888888886666666333210000 00 0000111122222333455677899
Q ss_pred EEEEcc
Q 012132 153 LIVLNT 158 (470)
Q Consensus 153 iV~~~~ 158 (470)
+|+...
T Consensus 71 ~Vv~g~ 76 (426)
T PRK13789 71 LIVVGP 76 (426)
T ss_pred EEEECC
Confidence 998743
No 495
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=31.37 E-value=85 Score=28.81 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=23.2
Q ss_pred CCch--hHHHHHHHHHHHhCCceEEEEecC
Q 012132 86 LSGG--PLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 86 ~~G~--~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
.||. ...+.+||.+|+++|+.|.++-.+
T Consensus 9 KGGVGKTT~a~nLA~~La~~G~rVLliD~D 38 (279)
T PRK13230 9 KGGIGKSTTVCNIAAALAESGKKVLVVGCD 38 (279)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCEEEEEeeC
Confidence 6676 477899999999999999888643
No 496
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=31.33 E-value=1.7e+02 Score=26.28 Aligned_cols=39 Identities=15% Similarity=0.102 Sum_probs=27.9
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
++|.++...-.-.|-......|+.+|+++|..|.++-.+
T Consensus 2 ~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D 40 (241)
T PRK13886 2 AKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTD 40 (241)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 466666643322233578999999999999999888654
No 497
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=31.26 E-value=3.1e+02 Score=23.02 Aligned_cols=44 Identities=11% Similarity=0.188 Sum_probs=30.6
Q ss_pred CeEEEEEeecc--cCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeC
Q 012132 270 DLLFAIINSVS--RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 316 (470)
Q Consensus 270 ~~~i~~vGrl~--~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~ 316 (470)
+.+++.+|.-+ .....+.+.+.+.++.+.++. ++|+.++++++.
T Consensus 69 d~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~---~~~~~~iiv~~~ 114 (191)
T cd01836 69 DVAVISIGVNDVTHLTSIARWRKQLAELVDALRA---KFPGARVVVTAV 114 (191)
T ss_pred CEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHh---hCCCCEEEEECC
Confidence 45666666533 345678888888888777765 348889988874
No 498
>PRK05246 glutathione synthetase; Provisional
Probab=31.12 E-value=60 Score=30.55 Aligned_cols=41 Identities=5% Similarity=-0.054 Sum_probs=29.9
Q ss_pred ccEEEEEeeccCC-CchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 74 SKLVLLVSHELSL-SGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 74 ~~kIl~v~~~~~~-~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
.|||+|+.....- ....-....|+++-+++||+|.++++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~d 42 (316)
T PRK05246 1 MMKVAFQMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPDD 42 (316)
T ss_pred CceEEEEeCCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhh
Confidence 3799999975432 2222456779999999999999998543
No 499
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=31.08 E-value=83 Score=28.60 Aligned_cols=35 Identities=20% Similarity=0.119 Sum_probs=26.7
Q ss_pred cEEEEEeeccCCCch--hHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGG--PLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~--~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|+|.+. ..||. ...+.+||..|+++|+.|.++-.+
T Consensus 1 ~~i~v~----gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVY----GKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEe----cCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 456555 25665 477999999999999999988644
No 500
>PRK05380 pyrG CTP synthetase; Validated
Probab=31.03 E-value=5.9e+02 Score=26.00 Aligned_cols=157 Identities=15% Similarity=0.103 Sum_probs=82.3
Q ss_pred hhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHH
Q 012132 212 VTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 291 (470)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a 291 (470)
...+..++++....+++.+.+.-.++- +..-..+.....+...+.+.++++++. +..+ ++.
T Consensus 214 ~l~~~~~~Kia~fc~v~~~~vi~~~d~---~~iy~vPl~l~~q~~~~~i~~~l~l~~------------~~~~----~~~ 274 (533)
T PRK05380 214 PLPEEEKRKIALFCNVPEEAVISAPDV---DSIYEVPLLLHEQGLDDIVLERLGLEA------------PEPD----LSE 274 (533)
T ss_pred CCCHHHHHHHHhccCCCHHHEEEcCCC---ccHHhhhHHHHHCCCHHHHHHHcCCCC------------CCCC----HHH
Confidence 344556666666667777665555543 222212222222222355667777652 1122 233
Q ss_pred HHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHH---HHhcCCCCcEEEeccc--C--CHHHHHHhcCEEEEcc
Q 012132 292 FYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNY---VMQKKIQDRVHFVNKT--L--TVAPYLAAIDVLVQNS 364 (470)
Q Consensus 292 ~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~---~~~~~l~~~V~~~g~~--~--~~~~~~~~aDv~v~pS 364 (470)
+..+.+.+... ...+++-++|.-.+-...|.+-.+.+ ....+..-.+.+.... + ...+.+..+|.+++|.
T Consensus 275 w~~~~~~~~~~---~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpG 351 (533)
T PRK05380 275 WEELVERLKNP---KGEVTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPG 351 (533)
T ss_pred HHHHHHHHhCC---CCceEEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecC
Confidence 44443333321 24689999998654333444443333 2333433345565542 2 2567899999999886
Q ss_pred CCc---ccccchHHHHHHhcCCCEEecCC
Q 012132 365 QAW---GECFGRITIEAMAFQLPVLGTAA 390 (470)
Q Consensus 365 ~~~---~E~~g~~~lEAma~G~PvI~s~~ 390 (470)
-+. .++.-..+-+|...|+|+++.-.
T Consensus 352 GfG~~~~~g~i~~i~~a~e~~iPiLGICl 380 (533)
T PRK05380 352 GFGERGIEGKILAIRYARENNIPFLGICL 380 (533)
T ss_pred CCCccccccHHHHHHHHHHCCCcEEEEch
Confidence 421 12222344467788999997643
Done!