Query 012132
Match_columns 470
No_of_seqs 350 out of 1603
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 03:24:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012132.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012132hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c48_A Predicted glycosyltrans 100.0 2.6E-46 8.8E-51 369.9 30.2 365 71-467 17-431 (438)
2 3fro_A GLGA glycogen synthase; 100.0 2.3E-46 8E-51 370.1 28.9 366 73-465 1-434 (439)
3 2x6q_A Trehalose-synthase TRET 100.0 6E-46 2.1E-50 364.7 30.7 358 71-462 37-415 (416)
4 3okp_A GDP-mannose-dependent a 100.0 3.4E-46 1.2E-50 363.7 28.0 355 71-465 1-383 (394)
5 2r60_A Glycosyl transferase, g 100.0 1.9E-46 6.5E-51 376.9 26.2 372 73-466 6-464 (499)
6 2jjm_A Glycosyl transferase, g 100.0 6.8E-45 2.3E-49 354.6 30.5 349 78-466 17-390 (394)
7 1rzu_A Glycogen synthase 1; gl 100.0 2E-44 6.8E-49 361.0 25.3 365 75-466 1-480 (485)
8 3oy2_A Glycosyltransferase B73 100.0 3.3E-44 1.1E-48 352.0 26.4 355 75-465 1-394 (413)
9 2qzs_A Glycogen synthase; glyc 100.0 1.1E-43 3.6E-48 355.7 28.5 365 75-466 1-481 (485)
10 2iw1_A Lipopolysaccharide core 100.0 2.8E-44 9.5E-49 347.7 21.1 348 75-463 1-373 (374)
11 3vue_A GBSS-I, granule-bound s 100.0 2.8E-43 9.5E-48 352.6 23.8 369 73-462 8-512 (536)
12 2gek_A Phosphatidylinositol ma 100.0 5.2E-42 1.8E-46 335.5 23.8 344 72-465 18-387 (406)
13 2iuy_A Avigt4, glycosyltransfe 100.0 5.8E-42 2E-46 327.3 22.4 309 72-464 1-338 (342)
14 3s28_A Sucrose synthase 1; gly 100.0 1.1E-41 3.6E-46 351.4 22.0 375 73-462 277-770 (816)
15 2x0d_A WSAF; GT4 family, trans 100.0 1.1E-38 3.9E-43 310.2 16.6 342 72-464 44-412 (413)
16 2vsy_A XCC0866; transferase, g 100.0 1.7E-35 5.8E-40 302.0 28.3 334 71-465 202-563 (568)
17 1f0k_A MURG, UDP-N-acetylgluco 100.0 3.3E-34 1.1E-38 276.0 25.5 320 75-464 7-360 (364)
18 2hy7_A Glucuronosyltransferase 100.0 5.1E-33 1.7E-37 270.7 13.9 312 73-462 13-380 (406)
19 1vgv_A UDP-N-acetylglucosamine 100.0 3.5E-32 1.2E-36 263.8 19.1 347 75-465 1-380 (384)
20 3beo_A UDP-N-acetylglucosamine 100.0 2.5E-32 8.6E-37 263.9 16.7 339 71-459 5-374 (375)
21 1uqt_A Alpha, alpha-trehalose- 100.0 1.2E-30 4.2E-35 256.6 27.5 218 229-461 218-454 (482)
22 3nb0_A Glycogen [starch] synth 100.0 5.4E-31 1.9E-35 259.5 23.1 305 149-465 180-637 (725)
23 2bfw_A GLGA glycogen synthase; 100.0 5.6E-31 1.9E-35 231.1 17.6 190 235-446 2-200 (200)
24 2xci_A KDO-transferase, 3-deox 100.0 5.1E-29 1.7E-33 239.5 16.9 309 75-447 41-366 (374)
25 3qhp_A Type 1 capsular polysac 100.0 5E-29 1.7E-33 211.8 14.6 161 270-453 2-166 (166)
26 3t5t_A Putative glycosyltransf 100.0 1.3E-27 4.4E-32 232.0 23.5 287 150-463 149-475 (496)
27 1v4v_A UDP-N-acetylglucosamine 100.0 3.9E-28 1.3E-32 234.6 17.4 332 74-463 5-366 (376)
28 2f9f_A First mannosyl transfer 99.9 2E-27 7E-32 203.8 9.7 153 264-437 17-174 (177)
29 3dzc_A UDP-N-acetylglucosamine 99.9 2.3E-22 7.9E-27 194.4 22.5 340 72-459 23-395 (396)
30 3otg_A CALG1; calicheamicin, T 99.9 7.4E-22 2.5E-26 192.9 21.3 165 268-460 241-409 (412)
31 3ot5_A UDP-N-acetylglucosamine 99.9 1.5E-21 5.2E-26 188.8 20.0 339 71-464 24-394 (403)
32 3s2u_A UDP-N-acetylglucosamine 99.9 6E-21 2E-25 182.6 22.3 319 73-461 1-354 (365)
33 3rhz_A GTF3, nucleotide sugar 99.8 3.6E-20 1.2E-24 173.8 19.3 289 87-454 25-329 (339)
34 4fzr_A SSFS6; structural genom 99.8 3.5E-21 1.2E-25 187.2 12.0 157 268-455 226-396 (398)
35 2iyf_A OLED, oleandomycin glyc 99.8 6.2E-20 2.1E-24 180.3 19.0 167 268-462 231-402 (430)
36 3tsa_A SPNG, NDP-rhamnosyltran 99.8 5.2E-20 1.8E-24 178.5 13.3 164 269-459 218-388 (391)
37 3oti_A CALG3; calicheamicin, T 99.8 1.3E-18 4.4E-23 169.1 19.4 159 268-458 231-396 (398)
38 3ia7_A CALG4; glycosysltransfe 99.8 1.5E-18 5.1E-23 168.8 18.8 164 268-460 230-399 (402)
39 3rsc_A CALG2; TDP, enediyne, s 99.7 3.1E-17 1.1E-21 160.2 18.5 164 268-460 246-414 (415)
40 2p6p_A Glycosyl transferase; X 99.7 4.7E-16 1.6E-20 150.2 22.0 158 268-457 209-377 (384)
41 3q3e_A HMW1C-like glycosyltran 99.6 1.7E-14 5.7E-19 142.3 22.5 185 261-464 430-626 (631)
42 4hwg_A UDP-N-acetylglucosamine 99.6 9E-16 3.1E-20 147.0 13.3 332 73-462 8-374 (385)
43 2yjn_A ERYCIII, glycosyltransf 99.6 2.2E-15 7.6E-20 148.2 12.2 160 269-459 267-435 (441)
44 2iya_A OLEI, oleandomycin glyc 99.5 7.5E-13 2.6E-17 129.4 22.5 161 269-458 255-420 (424)
45 3h4t_A Glycosyltransferase GTF 99.5 4.3E-13 1.5E-17 130.1 17.2 157 268-458 220-381 (404)
46 1l5w_A Maltodextrin phosphoryl 99.5 1.6E-12 5.6E-17 130.8 19.7 249 206-463 417-732 (796)
47 2c4m_A Glycogen phosphorylase; 99.5 1.8E-12 6E-17 130.5 18.0 252 206-463 406-721 (796)
48 4amg_A Snogd; transferase, pol 99.5 1.4E-12 4.7E-17 126.5 17.0 156 269-456 237-397 (400)
49 1iir_A Glycosyltransferase GTF 99.4 2.7E-11 9.1E-16 118.0 22.8 157 269-463 238-400 (415)
50 2o6l_A UDP-glucuronosyltransfe 99.3 3.1E-12 1.1E-16 108.1 9.1 133 268-433 20-161 (170)
51 1rrv_A Glycosyltransferase GTF 99.3 1E-10 3.4E-15 113.9 20.7 138 269-439 237-382 (416)
52 4gyw_A UDP-N-acetylglucosamine 99.3 4.9E-10 1.7E-14 115.8 26.0 184 261-464 514-708 (723)
53 2gj4_A Glycogen phosphorylase, 99.3 8.7E-11 3E-15 118.8 18.0 250 205-463 440-756 (824)
54 3hbm_A UDP-sugar hydrolase; PS 98.7 9.5E-07 3.3E-11 80.0 17.6 241 75-389 1-251 (282)
55 3l7i_A Teichoic acid biosynthe 98.0 0.00064 2.2E-08 70.7 22.9 296 74-426 352-683 (729)
56 1ygp_A Yeast glycogen phosphor 97.9 0.00053 1.8E-08 69.6 17.7 148 260-408 582-761 (879)
57 2c1x_A UDP-glucose flavonoid 3 97.9 4.1E-05 1.4E-09 74.9 9.5 95 339-441 325-426 (456)
58 3tov_A Glycosyl transferase fa 97.7 0.0024 8.1E-08 59.9 18.6 109 259-389 174-287 (349)
59 2pq6_A UDP-glucuronosyl/UDP-gl 97.7 0.00065 2.2E-08 66.9 15.4 96 338-442 352-454 (482)
60 3hbf_A Flavonoid 3-O-glucosylt 97.7 0.00069 2.4E-08 65.7 14.8 97 338-440 326-427 (454)
61 2acv_A Triterpene UDP-glucosyl 97.4 0.0046 1.6E-07 60.4 16.7 86 339-431 332-431 (463)
62 2gt1_A Lipopolysaccharide hept 97.3 0.036 1.2E-06 51.2 21.1 103 264-388 173-278 (326)
63 1psw_A ADP-heptose LPS heptosy 97.2 0.0011 3.7E-08 62.3 9.5 111 257-388 167-286 (348)
64 2vch_A Hydroquinone glucosyltr 97.1 0.0075 2.6E-07 59.2 13.9 81 341-426 341-429 (480)
65 2jzc_A UDP-N-acetylglucosamine 97.0 0.00028 9.6E-09 61.1 3.0 73 340-423 115-196 (224)
66 1xv5_A AGT, DNA alpha-glucosyl 94.8 1.4 4.9E-05 36.5 22.5 333 75-448 2-389 (401)
67 2bw0_A 10-FTHFDH, 10-formyltet 91.5 0.54 1.8E-05 43.2 7.9 80 70-158 18-107 (329)
68 3q0i_A Methionyl-tRNA formyltr 90.3 0.96 3.3E-05 41.2 8.4 81 71-158 4-93 (318)
69 3tqq_A Methionyl-tRNA formyltr 88.0 1.4 4.8E-05 40.0 7.7 79 73-158 1-88 (314)
70 4gi5_A Quinone reductase; prot 87.7 0.77 2.6E-05 41.0 5.7 43 70-112 18-61 (280)
71 3kht_A Response regulator; PSI 87.3 4.5 0.00015 31.3 9.7 112 307-425 4-127 (144)
72 1k68_A Phytochrome response re 87.1 4.4 0.00015 30.9 9.5 110 309-425 3-130 (140)
73 3heb_A Response regulator rece 84.4 5.5 0.00019 31.1 8.9 110 308-424 4-133 (152)
74 2ywr_A Phosphoribosylglycinami 84.3 4.8 0.00016 34.3 8.7 73 75-158 2-88 (216)
75 3auf_A Glycinamide ribonucleot 84.1 5.5 0.00019 34.2 9.1 74 74-158 22-109 (229)
76 3rfo_A Methionyl-tRNA formyltr 84.1 3.2 0.00011 37.7 8.0 79 73-158 3-90 (317)
77 3e8x_A Putative NAD-dependent 84.0 3 0.0001 35.8 7.7 39 69-113 16-54 (236)
78 2zay_A Response regulator rece 83.5 4.4 0.00015 31.4 7.9 111 307-426 7-128 (147)
79 2a5l_A Trp repressor binding p 83.2 1.5 5.2E-05 36.7 5.2 40 72-113 3-43 (200)
80 3ilh_A Two component response 83.1 7.5 0.00026 29.8 9.1 114 307-427 8-140 (146)
81 3cg4_A Response regulator rece 83.0 10 0.00034 29.0 9.8 110 307-425 6-126 (142)
82 3jte_A Response regulator rece 82.7 6.8 0.00023 30.1 8.7 111 309-428 4-125 (143)
83 3h5i_A Response regulator/sens 82.3 15 0.0005 28.1 11.4 110 308-426 5-124 (140)
84 2pln_A HP1043, response regula 82.2 7 0.00024 29.8 8.5 107 307-426 17-133 (137)
85 2d1p_A TUSD, hypothetical UPF0 82.2 2.4 8.1E-05 33.3 5.5 40 74-113 12-53 (140)
86 3grc_A Sensor protein, kinase; 82.1 12 0.0004 28.5 9.8 110 308-426 6-127 (140)
87 1k66_A Phytochrome response re 81.9 8.6 0.00029 29.6 9.1 111 308-425 6-137 (149)
88 2hy5_A Putative sulfurtransfer 81.8 2.4 8.3E-05 32.7 5.5 39 75-113 1-41 (130)
89 4ds3_A Phosphoribosylglycinami 81.3 7.2 0.00025 32.9 8.6 77 71-158 4-94 (209)
90 2vzf_A NADH-dependent FMN redu 81.0 2.5 8.5E-05 35.4 5.7 40 74-113 2-43 (197)
91 3h1g_A Chemotaxis protein CHEY 80.9 8.2 0.00028 29.1 8.4 111 308-426 5-127 (129)
92 1qkk_A DCTD, C4-dicarboxylate 80.8 12 0.00041 29.2 9.7 112 308-428 3-123 (155)
93 1fmt_A Methionyl-tRNA FMet for 80.6 6 0.0002 35.9 8.4 79 73-158 2-89 (314)
94 3av3_A Phosphoribosylglycinami 80.3 8.2 0.00028 32.7 8.7 74 74-158 3-90 (212)
95 4had_A Probable oxidoreductase 79.8 5.6 0.00019 36.6 8.3 93 269-388 22-116 (350)
96 2zki_A 199AA long hypothetical 79.8 1.9 6.5E-05 36.1 4.6 38 73-113 3-41 (199)
97 2ixd_A LMBE-related protein; h 79.3 8.4 0.00029 33.4 8.6 86 72-159 1-106 (242)
98 1i3c_A Response regulator RCP1 79.2 13 0.00044 28.8 9.2 111 307-424 7-135 (149)
99 2qvg_A Two component response 78.8 13 0.00044 28.4 9.1 111 308-425 7-134 (143)
100 3hzh_A Chemotaxis response reg 78.7 11 0.00038 29.6 8.8 108 309-425 37-156 (157)
101 1jx7_A Hypothetical protein YC 77.7 3.1 0.00011 31.2 4.9 39 75-113 2-43 (117)
102 4e7p_A Response regulator; DNA 77.4 12 0.0004 29.1 8.5 112 308-426 20-140 (150)
103 2rjn_A Response regulator rece 77.1 17 0.00057 28.3 9.4 112 307-427 6-127 (154)
104 2qzj_A Two-component response 77.1 11 0.00039 28.6 8.2 109 308-425 4-120 (136)
105 4g65_A TRK system potassium up 77.1 53 0.0018 31.4 18.6 128 282-425 218-366 (461)
106 3gt7_A Sensor protein; structu 76.8 18 0.00061 28.2 9.5 110 307-425 6-126 (154)
107 2d1p_B TUSC, hypothetical UPF0 76.7 3.8 0.00013 31.0 5.0 40 75-114 2-42 (119)
108 3cnb_A DNA-binding response re 76.4 22 0.00074 26.9 9.8 112 307-426 7-130 (143)
109 3n53_A Response regulator rece 76.4 21 0.00073 27.0 9.7 109 309-427 4-123 (140)
110 3eul_A Possible nitrate/nitrit 76.2 14 0.00048 28.6 8.7 114 307-427 14-136 (152)
111 2q62_A ARSH; alpha/beta, flavo 75.8 4.4 0.00015 35.3 5.8 43 71-113 31-74 (247)
112 1fy2_A Aspartyl dipeptidase; s 75.4 12 0.00043 32.0 8.6 96 285-391 17-122 (229)
113 3ius_A Uncharacterized conserv 75.2 5.1 0.00018 35.5 6.4 68 73-158 4-71 (286)
114 3p0r_A Azoreductase; structura 75.1 3.8 0.00013 34.8 5.1 41 73-113 3-48 (211)
115 3lua_A Response regulator rece 74.9 8.9 0.0003 29.3 7.0 111 308-427 4-128 (140)
116 2gkg_A Response regulator homo 74.8 18 0.00061 26.6 8.7 108 309-426 6-125 (127)
117 3kcn_A Adenylate cyclase homol 74.7 27 0.00092 26.9 10.4 111 308-428 4-125 (151)
118 3i6i_A Putative leucoanthocyan 74.7 12 0.00041 34.2 9.0 80 72-159 8-92 (346)
119 1dbw_A Transcriptional regulat 74.6 17 0.00059 26.9 8.6 110 308-426 3-121 (126)
120 1jbe_A Chemotaxis protein CHEY 74.4 24 0.00081 26.1 9.6 110 308-425 4-124 (128)
121 3hv2_A Response regulator/HD d 74.4 21 0.00071 27.7 9.3 110 308-426 14-133 (153)
122 2rdm_A Response regulator rece 74.3 24 0.00083 26.2 9.9 109 307-426 4-123 (132)
123 3hdv_A Response regulator; PSI 74.2 23 0.00078 26.6 9.3 112 307-427 6-128 (136)
124 2pq6_A UDP-glucuronosyl/UDP-gl 74.1 2.8 9.5E-05 40.8 4.6 39 72-112 6-44 (482)
125 3mc3_A DSRE/DSRF-like family p 73.7 5.4 0.00018 30.9 5.3 43 73-115 14-57 (134)
126 2hy5_B Intracellular sulfur ox 73.6 5.3 0.00018 31.1 5.2 40 75-114 6-46 (136)
127 1d4a_A DT-diaphorase, quinone 73.5 5.2 0.00018 35.5 5.8 40 74-113 2-42 (273)
128 3i42_A Response regulator rece 73.2 4.9 0.00017 30.1 5.0 34 72-111 1-34 (127)
129 3ouz_A Biotin carboxylase; str 73.1 4.4 0.00015 38.9 5.6 36 71-113 3-38 (446)
130 3kkl_A Probable chaperone prot 72.6 6.8 0.00023 34.0 6.2 44 72-115 1-53 (244)
131 3to5_A CHEY homolog; alpha(5)b 72.6 30 0.001 26.5 9.7 111 307-425 11-132 (134)
132 2b4a_A BH3024; flavodoxin-like 72.1 29 0.00099 26.1 9.7 111 307-427 14-132 (138)
133 1ydw_A AX110P-like protein; st 71.9 28 0.00096 32.0 10.8 72 307-389 29-102 (362)
134 2fzv_A Putative arsenical resi 71.7 13 0.00045 32.9 7.9 43 72-114 56-99 (279)
135 2qsj_A DNA-binding response re 71.7 18 0.00063 28.0 8.3 111 308-426 3-124 (154)
136 3slg_A PBGP3 protein; structur 71.4 10 0.00035 35.0 7.7 39 70-114 20-59 (372)
137 4b4o_A Epimerase family protei 71.2 4.9 0.00017 35.9 5.2 34 75-114 1-34 (298)
138 3hdg_A Uncharacterized protein 71.1 24 0.00082 26.5 8.7 111 307-426 6-125 (137)
139 2j48_A Two-component sensor ki 70.9 15 0.0005 26.6 7.2 107 310-425 3-117 (119)
140 3gl9_A Response regulator; bet 70.8 29 0.00098 25.6 9.4 107 310-425 4-121 (122)
141 3f6r_A Flavodoxin; FMN binding 70.8 6.2 0.00021 30.9 5.2 38 74-113 1-39 (148)
142 3q98_A Transcarbamylase; rossm 70.8 26 0.00089 32.8 10.0 84 73-158 190-274 (399)
143 1jkx_A GART;, phosphoribosylgl 70.7 26 0.0009 29.5 9.3 73 75-158 1-87 (212)
144 1uan_A Hypothetical protein TT 70.5 18 0.00061 30.9 8.4 38 74-113 1-38 (227)
145 3eod_A Protein HNR; response r 70.2 29 0.00097 25.8 8.9 111 307-426 6-126 (130)
146 3tqr_A Phosphoribosylglycinami 70.1 17 0.00058 30.8 7.9 74 74-158 5-91 (215)
147 4ep1_A Otcase, ornithine carba 69.7 21 0.00071 32.6 8.8 78 73-158 178-255 (340)
148 2qxy_A Response regulator; reg 69.6 20 0.00067 27.3 7.9 111 308-428 4-123 (142)
149 3m6m_D Sensory/regulatory prot 69.4 31 0.0011 26.3 9.1 111 307-426 13-136 (143)
150 3uuw_A Putative oxidoreductase 69.3 9.4 0.00032 34.3 6.7 69 306-389 29-97 (308)
151 3t6k_A Response regulator rece 69.2 34 0.0012 25.7 10.0 111 308-427 4-125 (136)
152 3rof_A Low molecular weight pr 69.0 14 0.00049 29.4 6.9 84 71-159 3-92 (158)
153 3i42_A Response regulator rece 68.9 31 0.0011 25.4 8.9 110 308-426 3-122 (127)
154 3kcq_A Phosphoribosylglycinami 68.8 19 0.00063 30.5 7.9 75 73-158 7-90 (215)
155 4dad_A Putative pilus assembly 68.7 13 0.00044 28.6 6.7 111 307-426 19-141 (146)
156 3gd5_A Otcase, ornithine carba 68.6 22 0.00075 32.2 8.7 78 73-158 156-233 (323)
157 2qr3_A Two-component system re 68.4 25 0.00084 26.5 8.3 111 308-427 3-127 (140)
158 1e2b_A Enzyme IIB-cellobiose; 68.1 7.4 0.00025 28.7 4.7 66 310-380 6-71 (106)
159 3da8_A Probable 5'-phosphoribo 67.8 19 0.00065 30.4 7.7 75 72-158 10-97 (215)
160 1jzt_A Hypothetical 27.5 kDa p 67.8 11 0.00037 32.7 6.4 37 75-114 59-95 (246)
161 3b6i_A Flavoprotein WRBA; flav 67.8 6.9 0.00024 32.4 5.1 39 74-114 1-41 (198)
162 3cfy_A Putative LUXO repressor 67.6 32 0.0011 25.9 8.8 107 310-425 6-121 (137)
163 2l2q_A PTS system, cellobiose- 67.6 32 0.0011 25.3 8.2 74 311-389 8-83 (109)
164 3rc1_A Sugar 3-ketoreductase; 67.1 12 0.0004 34.5 6.9 78 70-163 23-102 (350)
165 2r25_B Osmosensing histidine p 66.9 37 0.0013 25.4 9.1 109 309-425 3-126 (133)
166 3u3x_A Oxidoreductase; structu 66.9 32 0.0011 31.7 9.9 92 270-389 26-119 (361)
167 1mb3_A Cell division response 66.8 35 0.0012 24.9 9.5 107 310-425 3-120 (124)
168 3tem_A Ribosyldihydronicotinam 66.7 7.2 0.00025 33.5 5.0 40 75-114 2-42 (228)
169 1ydg_A Trp repressor binding p 66.5 7.9 0.00027 32.5 5.3 40 73-114 5-45 (211)
170 3lte_A Response regulator; str 66.4 37 0.0013 25.1 9.1 110 308-426 6-125 (132)
171 2xj4_A MIPZ; replication, cell 66.3 7.5 0.00026 34.6 5.3 43 72-114 1-43 (286)
172 2i6u_A Otcase, ornithine carba 65.9 34 0.0012 30.7 9.4 79 73-158 147-225 (307)
173 1kjn_A MTH0777; hypotethical p 65.8 14 0.00047 28.9 5.7 39 74-112 6-44 (157)
174 4a8t_A Putrescine carbamoyltra 65.7 29 0.00099 31.6 9.0 76 72-156 173-248 (339)
175 1dcf_A ETR1 protein; beta-alph 65.7 20 0.00067 27.0 7.1 111 307-426 6-129 (136)
176 2hpv_A FMN-dependent NADH-azor 65.6 7.9 0.00027 32.5 5.1 40 74-113 1-45 (208)
177 3ty2_A 5'-nucleotidase SURE; s 65.4 9.3 0.00032 33.3 5.4 40 73-116 10-49 (261)
178 1p6q_A CHEY2; chemotaxis, sign 65.3 34 0.0012 25.2 8.4 110 308-425 6-126 (129)
179 1vlv_A Otcase, ornithine carba 65.1 29 0.00098 31.5 8.8 79 73-158 166-244 (325)
180 2yfk_A Aspartate/ornithine car 65.1 38 0.0013 31.9 9.8 84 73-158 187-271 (418)
181 4a8p_A Putrescine carbamoyltra 65.0 33 0.0011 31.4 9.2 76 72-156 151-226 (355)
182 1sqs_A Conserved hypothetical 65.0 8 0.00027 33.4 5.1 40 74-113 1-42 (242)
183 4f3y_A DHPR, dihydrodipicolina 64.9 17 0.00057 32.1 7.1 60 348-409 65-129 (272)
184 3r6w_A FMN-dependent NADH-azor 64.6 6.8 0.00023 33.0 4.5 40 74-113 1-44 (212)
185 1pvv_A Otcase, ornithine carba 64.4 39 0.0013 30.4 9.5 78 73-158 154-231 (315)
186 3qjg_A Epidermin biosynthesis 64.2 9.3 0.00032 31.2 4.9 40 73-115 4-43 (175)
187 3cg0_A Response regulator rece 63.8 43 0.0015 25.0 10.0 111 307-426 8-128 (140)
188 4fb5_A Probable oxidoreductase 63.5 13 0.00045 34.6 6.7 100 269-389 24-125 (393)
189 3tpf_A Otcase, ornithine carba 63.1 33 0.0011 30.8 8.7 77 74-158 146-222 (307)
190 2bln_A Protein YFBG; transfera 63.0 18 0.00062 32.5 7.1 77 75-158 1-83 (305)
191 1e2b_A Enzyme IIB-cellobiose; 63.0 13 0.00043 27.4 5.1 41 72-114 1-41 (106)
192 3e9m_A Oxidoreductase, GFO/IDH 62.9 44 0.0015 30.2 9.9 69 307-389 28-98 (330)
193 3f6c_A Positive transcription 62.8 44 0.0015 24.8 10.1 109 309-426 2-120 (134)
194 3rc1_A Sugar 3-ketoreductase; 62.6 16 0.00054 33.6 6.9 67 307-388 51-119 (350)
195 2gwr_A DNA-binding response re 62.5 70 0.0024 26.9 10.8 108 309-425 6-121 (238)
196 2vch_A Hydroquinone glucosyltr 62.5 6.3 0.00022 38.2 4.3 39 74-114 6-45 (480)
197 2rk3_A Protein DJ-1; parkinson 62.4 23 0.00078 29.3 7.3 74 72-159 1-75 (197)
198 1meo_A Phosophoribosylglycinam 61.8 33 0.0011 28.8 8.1 73 75-158 1-87 (209)
199 2qv0_A Protein MRKE; structura 61.7 49 0.0017 24.9 9.7 112 307-426 8-127 (143)
200 3en0_A Cyanophycinase; serine 61.6 40 0.0014 30.0 9.0 85 307-392 55-155 (291)
201 3f2v_A General stress protein 61.6 5.3 0.00018 33.3 3.1 38 74-112 1-38 (192)
202 3n8i_A Low molecular weight ph 61.6 21 0.00073 28.4 6.6 86 71-160 2-94 (157)
203 2phj_A 5'-nucleotidase SURE; S 61.5 12 0.00042 32.4 5.4 39 74-116 1-39 (251)
204 3eag_A UDP-N-acetylmuramate:L- 61.5 57 0.002 29.4 10.4 71 74-158 4-74 (326)
205 3n7t_A Macrophage binding prot 61.4 14 0.00049 32.0 6.0 42 74-115 9-59 (247)
206 3crn_A Response regulator rece 61.1 48 0.0016 24.6 9.8 108 309-425 4-120 (132)
207 2jba_A Phosphate regulon trans 61.1 34 0.0011 25.1 7.6 107 310-425 4-121 (127)
208 4e21_A 6-phosphogluconate dehy 61.0 13 0.00045 34.3 6.0 73 71-161 19-92 (358)
209 1zgz_A Torcad operon transcrip 60.8 45 0.0015 24.2 9.5 107 310-425 4-118 (122)
210 1rw7_A YDR533CP; alpha-beta sa 60.7 15 0.0005 31.8 5.9 43 73-115 2-53 (243)
211 3fvw_A Putative NAD(P)H-depend 60.6 9.7 0.00033 31.5 4.6 39 74-113 2-41 (192)
212 3b2n_A Uncharacterized protein 60.5 49 0.0017 24.6 8.6 111 309-426 4-123 (133)
213 3jvi_A Protein tyrosine phosph 60.4 27 0.00093 27.9 7.1 84 72-159 2-92 (161)
214 3hly_A Flavodoxin-like domain; 60.3 11 0.00038 30.1 4.8 38 75-113 1-38 (161)
215 2ark_A Flavodoxin; FMN, struct 60.2 12 0.0004 30.8 5.0 38 74-113 4-43 (188)
216 3f6p_A Transcriptional regulat 60.2 47 0.0016 24.2 9.6 107 310-425 4-118 (120)
217 2qv7_A Diacylglycerol kinase D 59.9 17 0.00059 33.1 6.6 45 70-114 20-65 (337)
218 3cu5_A Two component transcrip 59.6 54 0.0019 24.7 9.8 66 357-425 50-122 (141)
219 1duv_G Octase-1, ornithine tra 59.5 36 0.0012 30.9 8.4 79 73-158 154-232 (333)
220 3cea_A MYO-inositol 2-dehydrog 59.4 54 0.0019 29.7 10.0 68 307-388 32-101 (346)
221 2hna_A Protein MIOC, flavodoxi 59.3 11 0.00038 29.5 4.5 34 75-110 2-36 (147)
222 3c97_A Signal transduction his 59.2 54 0.0019 24.6 11.0 109 309-426 11-130 (140)
223 1dxh_A Ornithine carbamoyltran 58.8 38 0.0013 30.8 8.4 79 73-158 154-232 (335)
224 3rpe_A MDAB, modulator of drug 58.6 20 0.00069 30.4 6.2 40 74-113 25-69 (218)
225 1t5b_A Acyl carrier protein ph 58.3 10 0.00036 31.3 4.5 40 74-113 1-44 (201)
226 1zq6_A Otcase, ornithine carba 58.1 48 0.0016 30.4 9.0 82 73-158 189-273 (359)
227 3mm4_A Histidine kinase homolo 58.1 49 0.0017 27.3 8.7 111 308-428 61-198 (206)
228 2x4g_A Nucleoside-diphosphate- 58.1 46 0.0016 29.9 9.3 35 74-114 13-47 (342)
229 3mcu_A Dipicolinate synthase, 57.9 13 0.00044 31.3 4.8 39 73-115 4-44 (207)
230 3c3m_A Response regulator rece 57.9 54 0.0018 24.6 8.4 110 309-427 4-124 (138)
231 2prs_A High-affinity zinc upta 57.8 23 0.00079 31.4 6.9 92 349-443 41-157 (284)
232 3evn_A Oxidoreductase, GFO/IDH 57.4 22 0.00074 32.3 6.8 69 307-389 28-98 (329)
233 1mvo_A PHOP response regulator 57.4 56 0.0019 24.2 10.4 110 309-427 4-122 (136)
234 3u7r_A NADPH-dependent FMN red 57.4 14 0.00047 30.6 4.9 40 73-112 1-40 (190)
235 3ruf_A WBGU; rossmann fold, UD 57.3 12 0.00041 34.2 5.1 38 72-115 23-60 (351)
236 1f4p_A Flavodoxin; electron tr 57.3 13 0.00044 29.0 4.6 36 75-112 1-37 (147)
237 1rcu_A Conserved hypothetical 57.1 9.3 0.00032 31.8 3.8 66 352-423 114-192 (195)
238 2pn1_A Carbamoylphosphate synt 57.0 21 0.00073 32.2 6.7 34 72-113 2-37 (331)
239 4huj_A Uncharacterized protein 57.0 14 0.00049 31.2 5.2 37 69-112 18-54 (220)
240 3r0j_A Possible two component 56.8 78 0.0027 26.9 10.2 109 308-425 23-140 (250)
241 1zh8_A Oxidoreductase; TM0312, 56.6 33 0.0011 31.2 8.0 94 268-389 16-113 (340)
242 4h31_A Otcase, ornithine carba 56.5 37 0.0013 31.3 8.1 78 73-157 180-257 (358)
243 3ec7_A Putative dehydrogenase; 56.5 47 0.0016 30.4 9.0 80 70-163 19-100 (357)
244 3snk_A Response regulator CHEY 56.4 25 0.00085 26.4 6.1 109 308-425 14-132 (135)
245 1hdo_A Biliverdin IX beta redu 56.4 14 0.00047 30.5 5.0 35 73-113 2-36 (206)
246 3oqb_A Oxidoreductase; structu 56.4 22 0.00076 33.0 6.9 56 325-388 56-113 (383)
247 3dfz_A SIRC, precorrin-2 dehyd 56.0 28 0.00096 29.6 6.7 73 72-160 29-101 (223)
248 3qvo_A NMRA family protein; st 55.9 11 0.00037 32.3 4.3 37 71-113 20-57 (236)
249 1p9l_A Dihydrodipicolinate red 55.8 57 0.0019 28.1 8.8 75 310-392 2-79 (245)
250 1qyc_A Phenylcoumaran benzylic 55.4 39 0.0013 29.9 8.2 79 74-159 4-86 (308)
251 3gpi_A NAD-dependent epimerase 55.4 12 0.00041 33.0 4.6 36 72-114 1-36 (286)
252 2ixa_A Alpha-N-acetylgalactosa 55.3 46 0.0016 31.6 9.0 74 307-388 43-121 (444)
253 3enk_A UDP-glucose 4-epimerase 55.3 54 0.0018 29.5 9.2 36 73-114 4-39 (341)
254 3nhm_A Response regulator; pro 55.3 60 0.0021 23.9 10.4 109 308-426 4-122 (133)
255 3zqu_A Probable aromatic acid 55.0 22 0.00074 29.9 5.8 38 73-113 3-40 (209)
256 3rqi_A Response regulator prot 55.0 32 0.0011 27.7 6.9 110 308-426 7-125 (184)
257 3dfz_A SIRC, precorrin-2 dehyd 54.8 97 0.0033 26.2 13.7 126 307-446 53-188 (223)
258 3dty_A Oxidoreductase, GFO/IDH 54.7 85 0.0029 29.2 10.7 70 307-388 38-115 (398)
259 2acv_A Triterpene UDP-glucosyl 54.6 14 0.00047 35.6 5.2 40 73-114 8-49 (463)
260 1srr_A SPO0F, sporulation resp 54.5 59 0.002 23.6 8.8 109 309-426 4-121 (124)
261 1g63_A Epidermin modifying enz 54.5 14 0.00046 30.4 4.3 38 74-114 2-39 (181)
262 3cz5_A Two-component response 54.4 70 0.0024 24.4 10.4 111 307-426 4-125 (153)
263 1xhf_A DYE resistance, aerobic 54.4 59 0.002 23.5 9.4 108 309-425 4-119 (123)
264 4e7p_A Response regulator; DNA 54.4 16 0.00054 28.3 4.7 37 68-110 14-52 (150)
265 3grc_A Sensor protein, kinase; 54.3 20 0.00067 27.2 5.2 34 72-111 4-37 (140)
266 3rqi_A Response regulator prot 54.2 16 0.00056 29.6 5.0 34 71-110 4-37 (184)
267 3moi_A Probable dehydrogenase; 54.0 38 0.0013 31.5 8.1 68 307-389 26-95 (387)
268 3eod_A Protein HNR; response r 54.0 21 0.0007 26.6 5.2 33 72-110 5-37 (130)
269 1id1_A Putative potassium chan 53.8 14 0.00048 29.0 4.4 77 72-160 1-81 (153)
270 2ayx_A Sensor kinase protein R 53.7 1.1E+02 0.0036 26.3 11.2 109 308-425 129-246 (254)
271 1jl3_A Arsenate reductase; alp 53.7 56 0.0019 25.2 7.7 81 72-159 1-83 (139)
272 2w37_A Ornithine carbamoyltran 53.6 45 0.0015 30.6 8.0 79 73-158 175-253 (359)
273 1e4e_A Vancomycin/teicoplanin 53.5 8.4 0.00029 35.3 3.3 39 72-113 1-44 (343)
274 4h3v_A Oxidoreductase domain p 53.5 26 0.00087 32.5 6.8 68 308-389 37-106 (390)
275 1ys7_A Transcriptional regulat 53.3 97 0.0033 25.7 11.5 109 308-425 7-124 (233)
276 2fb6_A Conserved hypothetical 53.2 8.7 0.0003 28.9 2.7 40 75-114 8-49 (117)
277 1oth_A Protein (ornithine tran 53.1 44 0.0015 30.2 7.8 77 73-157 154-230 (321)
278 4amu_A Ornithine carbamoyltran 53.0 46 0.0016 30.7 8.0 78 73-157 179-258 (365)
279 3to5_A CHEY homolog; alpha(5)b 53.0 40 0.0014 25.8 6.7 33 73-111 11-43 (134)
280 3kzn_A Aotcase, N-acetylornith 53.0 77 0.0026 29.1 9.7 83 73-157 189-272 (359)
281 3f6p_A Transcriptional regulat 52.9 39 0.0013 24.6 6.7 31 74-110 2-32 (120)
282 3lte_A Response regulator; str 52.9 55 0.0019 24.1 7.6 33 73-111 5-37 (132)
283 1d1q_A Tyrosine phosphatase (E 52.9 59 0.002 25.8 7.9 86 71-159 4-96 (161)
284 3t6k_A Response regulator rece 52.8 21 0.00072 27.0 5.2 33 72-110 2-34 (136)
285 3f6c_A Positive transcription 52.8 45 0.0015 24.7 7.1 32 74-111 1-32 (134)
286 3hv2_A Response regulator/HD d 52.8 24 0.00083 27.2 5.7 35 71-111 11-45 (153)
287 1t0i_A YLR011WP; FMN binding p 52.7 21 0.00071 29.3 5.4 37 75-111 1-44 (191)
288 3p9x_A Phosphoribosylglycinami 52.6 80 0.0027 26.5 8.9 74 74-158 2-89 (211)
289 3m2t_A Probable dehydrogenase; 52.5 19 0.00065 33.2 5.6 70 306-389 28-99 (359)
290 3lqk_A Dipicolinate synthase s 52.5 19 0.00065 30.1 5.0 41 72-115 5-46 (201)
291 3egc_A Putative ribose operon 52.5 1.2E+02 0.004 26.4 18.2 213 73-347 7-222 (291)
292 3fwz_A Inner membrane protein 52.4 35 0.0012 26.2 6.4 71 74-160 7-81 (140)
293 4hkt_A Inositol 2-dehydrogenas 52.3 45 0.0016 30.1 8.1 67 307-389 26-94 (331)
294 3ijp_A DHPR, dihydrodipicolina 52.3 29 0.001 30.8 6.4 60 348-409 80-144 (288)
295 1rtt_A Conserved hypothetical 52.3 7.7 0.00026 32.1 2.6 40 73-113 5-45 (193)
296 3qxc_A Dethiobiotin synthetase 52.2 23 0.00079 30.6 5.7 41 71-111 17-57 (242)
297 1p2f_A Response regulator; DRR 52.2 29 0.00099 28.9 6.4 106 310-425 4-116 (220)
298 3l4b_C TRKA K+ channel protien 52.0 33 0.0011 28.8 6.7 71 75-160 1-75 (218)
299 2pl1_A Transcriptional regulat 52.0 64 0.0022 23.2 10.1 107 310-425 2-117 (121)
300 3sds_A Ornithine carbamoyltran 52.0 1E+02 0.0034 28.2 10.1 38 73-116 187-224 (353)
301 4dzz_A Plasmid partitioning pr 51.8 20 0.00069 29.6 5.2 39 75-113 1-39 (206)
302 2q1w_A Putative nucleotide sug 51.7 18 0.0006 32.8 5.2 40 68-113 15-54 (333)
303 3q2i_A Dehydrogenase; rossmann 51.7 97 0.0033 28.2 10.4 68 307-389 37-106 (354)
304 3u7i_A FMN-dependent NADH-azor 51.6 20 0.00069 30.4 5.2 40 74-113 4-50 (223)
305 4hs4_A Chromate reductase; tri 51.6 13 0.00043 31.1 3.8 39 72-111 4-44 (199)
306 2a9o_A Response regulator; ess 51.5 64 0.0022 23.1 10.3 108 310-426 3-118 (120)
307 2m1z_A LMO0427 protein; homolo 51.3 27 0.00092 25.7 5.0 38 74-113 2-42 (106)
308 4b4t_W RPN10, 26S proteasome r 51.2 34 0.0012 30.0 6.6 54 270-335 108-161 (268)
309 1h6d_A Precursor form of gluco 50.9 21 0.00072 34.0 5.7 72 307-389 107-181 (433)
310 2vvp_A Ribose-5-phosphate isom 50.8 14 0.00049 29.5 3.7 37 72-112 1-37 (162)
311 3crn_A Response regulator rece 50.8 23 0.00078 26.5 5.1 33 72-110 1-33 (132)
312 2qxy_A Response regulator; reg 50.5 20 0.00069 27.2 4.7 32 73-110 3-34 (142)
313 2r85_A PURP protein PF1517; AT 50.4 12 0.00041 33.9 3.9 32 74-113 2-33 (334)
314 3q9l_A Septum site-determining 50.3 22 0.00075 30.7 5.4 40 75-114 2-41 (260)
315 3rht_A (gatase1)-like protein; 49.9 31 0.0011 30.1 6.2 37 74-114 4-40 (259)
316 4dad_A Putative pilus assembly 49.9 17 0.00058 27.9 4.2 35 71-111 17-52 (146)
317 3db2_A Putative NADPH-dependen 49.4 36 0.0012 31.2 7.0 76 72-163 3-79 (354)
318 3ehd_A Uncharacterized conserv 49.2 31 0.0011 27.6 5.5 36 352-388 65-103 (162)
319 3h75_A Periplasmic sugar-bindi 49.2 1.5E+02 0.005 26.6 22.1 42 72-113 1-43 (350)
320 3hzh_A Chemotaxis response reg 49.0 22 0.00074 27.8 4.8 32 71-108 33-64 (157)
321 3grf_A Ornithine carbamoyltran 48.9 60 0.002 29.4 8.0 79 72-157 159-241 (328)
322 3lcm_A SMU.1420, putative oxid 48.8 20 0.00067 29.8 4.6 38 75-113 1-39 (196)
323 1g3q_A MIND ATPase, cell divis 48.6 25 0.00087 29.8 5.5 40 75-114 2-41 (237)
324 3cg4_A Response regulator rece 48.5 24 0.00083 26.7 4.9 34 72-111 5-38 (142)
325 2o1e_A YCDH; alpha-beta protei 48.4 49 0.0017 29.8 7.5 89 351-443 65-173 (312)
326 2i87_A D-alanine-D-alanine lig 48.3 9.9 0.00034 35.2 2.9 42 72-113 1-44 (364)
327 1jf8_A Arsenate reductase; ptp 48.3 88 0.003 23.8 8.4 81 72-159 1-83 (131)
328 4gqa_A NAD binding oxidoreduct 48.0 35 0.0012 32.0 6.8 102 268-389 24-127 (412)
329 3llv_A Exopolyphosphatase-rela 47.8 32 0.0011 26.3 5.5 71 74-160 6-80 (141)
330 3a10_A Response regulator; pho 47.7 73 0.0025 22.7 10.1 106 310-424 3-115 (116)
331 2f62_A Nucleoside 2-deoxyribos 47.7 82 0.0028 25.1 7.8 38 351-389 62-105 (161)
332 3hn2_A 2-dehydropantoate 2-red 47.6 45 0.0015 29.9 7.2 32 74-112 2-33 (312)
333 3m2p_A UDP-N-acetylglucosamine 47.6 19 0.00064 32.2 4.7 34 74-113 2-35 (311)
334 3q9s_A DNA-binding response re 47.4 92 0.0031 26.5 9.0 109 308-425 37-153 (249)
335 1rpn_A GDP-mannose 4,6-dehydra 47.4 26 0.00089 31.5 5.7 36 73-114 13-48 (335)
336 3kto_A Response regulator rece 47.3 28 0.00096 26.2 5.1 110 308-426 6-126 (136)
337 3osu_A 3-oxoacyl-[acyl-carrier 47.3 39 0.0013 28.9 6.6 35 74-113 3-37 (246)
338 3mz0_A Inositol 2-dehydrogenas 46.9 67 0.0023 29.1 8.4 70 307-389 26-97 (344)
339 3of5_A Dethiobiotin synthetase 46.8 31 0.0011 29.4 5.7 38 74-111 3-40 (228)
340 1kgs_A DRRD, DNA binding respo 46.8 1.2E+02 0.0041 24.9 10.5 108 309-425 3-119 (225)
341 4em8_A Ribose 5-phosphate isom 46.8 30 0.001 27.1 4.9 39 71-113 4-42 (148)
342 3nbm_A PTS system, lactose-spe 46.8 48 0.0017 24.3 5.9 76 308-389 6-85 (108)
343 1iow_A DD-ligase, DDLB, D-ALA\ 46.7 17 0.00059 32.3 4.3 40 73-113 1-43 (306)
344 1s8n_A Putative antiterminator 46.6 1.2E+02 0.004 24.7 12.4 110 309-427 14-132 (205)
345 2qpq_A Protein BUG27; alpha/be 46.4 1.6E+02 0.0054 26.1 10.6 142 273-437 105-267 (301)
346 2gkg_A Response regulator homo 46.3 18 0.00061 26.6 3.7 34 72-111 3-36 (127)
347 2rjn_A Response regulator rece 46.1 29 0.00098 26.8 5.1 33 72-110 5-37 (154)
348 4e3z_A Putative oxidoreductase 46.1 39 0.0013 29.4 6.4 37 72-113 23-59 (272)
349 3hp4_A GDSL-esterase; psychrot 46.1 86 0.0029 24.9 8.2 40 73-112 1-44 (185)
350 3gem_A Short chain dehydrogena 46.1 52 0.0018 28.5 7.2 34 76-114 28-61 (260)
351 1hyq_A MIND, cell division inh 45.9 29 0.001 30.0 5.6 40 75-114 2-41 (263)
352 2pzm_A Putative nucleotide sug 45.8 23 0.00078 32.0 5.0 39 69-113 15-53 (330)
353 3u9l_A 3-oxoacyl-[acyl-carrier 45.8 79 0.0027 28.4 8.6 34 75-113 5-38 (324)
354 2hqr_A Putative transcriptiona 45.7 48 0.0017 27.5 6.8 103 311-426 3-115 (223)
355 1tmy_A CHEY protein, TMY; chem 45.6 81 0.0028 22.6 9.3 107 310-424 4-119 (120)
356 4i8i_A Hypothetical protein; 5 45.5 20 0.00069 31.6 4.3 83 74-159 10-102 (271)
357 2vns_A Metalloreductase steap3 45.5 32 0.0011 28.9 5.5 33 73-112 27-59 (215)
358 2vo1_A CTP synthase 1; pyrimid 45.4 36 0.0012 29.7 5.6 44 70-113 18-62 (295)
359 1ehi_A LMDDL2, D-alanine:D-lac 45.4 21 0.00071 33.2 4.7 42 72-113 1-45 (377)
360 1s8n_A Putative antiterminator 45.3 30 0.001 28.4 5.3 33 73-111 12-44 (205)
361 1yio_A Response regulatory pro 45.2 1.2E+02 0.0042 24.5 12.9 109 309-426 5-122 (208)
362 3r0j_A Possible two component 45.2 27 0.00094 29.9 5.2 34 71-110 20-53 (250)
363 2e6c_A 5'-nucleotidase SURE; S 45.2 31 0.0011 29.7 5.3 37 75-115 1-37 (244)
364 3g1w_A Sugar ABC transporter; 45.1 1.5E+02 0.0053 25.7 21.3 226 73-357 3-233 (305)
365 3o74_A Fructose transport syst 45.1 1.4E+02 0.0049 25.3 18.8 40 74-113 2-41 (272)
366 3fni_A Putative diflavin flavo 45.0 37 0.0013 26.9 5.5 39 74-113 4-42 (159)
367 3db2_A Putative NADPH-dependen 45.0 50 0.0017 30.2 7.2 69 306-389 27-97 (354)
368 3v5n_A Oxidoreductase; structu 45.0 71 0.0024 30.0 8.4 71 307-389 63-141 (417)
369 3svl_A Protein YIEF; E. coli C 44.9 9.5 0.00032 31.7 2.0 41 73-113 3-44 (193)
370 2ho3_A Oxidoreductase, GFO/IDH 44.8 58 0.002 29.2 7.6 69 307-389 24-93 (325)
371 3euw_A MYO-inositol dehydrogen 44.6 50 0.0017 30.0 7.1 68 307-389 27-96 (344)
372 3gi1_A LBP, laminin-binding pr 44.5 34 0.0012 30.3 5.7 88 351-443 55-162 (286)
373 2ejb_A Probable aromatic acid 44.5 38 0.0013 27.9 5.6 36 75-113 2-37 (189)
374 3l4e_A Uncharacterized peptida 44.5 28 0.00096 29.2 4.9 82 308-391 27-122 (206)
375 4e08_A DJ-1 beta; flavodoxin-l 44.5 83 0.0028 25.6 7.9 72 73-159 4-76 (190)
376 3f5d_A Protein YDEA; unknow pr 44.5 27 0.00092 29.2 4.8 70 72-158 1-71 (206)
377 1qzu_A Hypothetical protein MD 44.4 26 0.00089 29.4 4.6 40 72-114 17-57 (206)
378 3kht_A Response regulator; PSI 44.2 53 0.0018 24.8 6.3 34 72-111 3-36 (144)
379 3fgn_A Dethiobiotin synthetase 44.1 36 0.0012 29.5 5.7 39 73-111 24-62 (251)
380 2p2s_A Putative oxidoreductase 44.1 63 0.0022 29.2 7.7 77 72-163 2-79 (336)
381 1j9j_A Stationary phase surviV 43.9 34 0.0012 29.5 5.4 38 75-116 1-38 (247)
382 1tlt_A Putative oxidoreductase 43.8 39 0.0014 30.3 6.2 67 307-388 29-95 (319)
383 2ew2_A 2-dehydropantoate 2-red 43.7 22 0.00074 31.8 4.5 33 73-112 2-34 (316)
384 1vl6_A Malate oxidoreductase; 43.5 2E+02 0.0067 26.7 10.7 36 348-386 255-290 (388)
385 2nzw_A Alpha1,3-fucosyltransfe 43.5 37 0.0013 31.3 5.8 82 348-434 223-308 (371)
386 1xvl_A Mn transporter, MNTC pr 43.5 51 0.0017 29.8 6.8 88 351-443 89-185 (321)
387 3ezy_A Dehydrogenase; structur 43.4 64 0.0022 29.3 7.6 69 307-389 25-95 (344)
388 2b69_A UDP-glucuronate decarbo 43.3 23 0.0008 32.1 4.7 37 71-113 24-60 (343)
389 4egb_A DTDP-glucose 4,6-dehydr 43.0 22 0.00074 32.3 4.3 34 72-111 22-55 (346)
390 1lss_A TRK system potassium up 42.9 30 0.001 26.1 4.7 32 74-112 4-35 (140)
391 1bg6_A N-(1-D-carboxylethyl)-L 42.8 23 0.00079 32.4 4.5 33 72-111 2-34 (359)
392 2lpm_A Two-component response 42.8 38 0.0013 25.5 5.0 108 308-424 8-120 (123)
393 1zgh_A Methionyl-tRNA formyltr 42.5 30 0.001 30.2 4.8 34 74-111 30-63 (260)
394 1qv9_A F420-dependent methylen 42.4 1.4E+02 0.0049 25.3 8.5 85 306-410 30-122 (283)
395 4gwg_A 6-phosphogluconate dehy 42.4 49 0.0017 31.9 6.8 76 72-160 2-78 (484)
396 3nvt_A 3-deoxy-D-arabino-heptu 42.3 2.1E+02 0.0072 26.5 10.8 104 273-391 144-258 (385)
397 2ph1_A Nucleotide-binding prot 42.1 33 0.0011 29.8 5.2 41 74-114 17-57 (262)
398 3gt7_A Sensor protein; structu 42.1 34 0.0011 26.5 4.9 33 73-111 6-38 (154)
399 3ew7_A LMO0794 protein; Q8Y8U8 42.0 27 0.00093 29.0 4.6 33 75-113 1-33 (221)
400 3dhn_A NAD-dependent epimerase 41.9 27 0.00092 29.3 4.5 34 74-113 4-37 (227)
401 2v4n_A Multifunctional protein 41.9 40 0.0014 29.3 5.5 39 74-116 1-39 (254)
402 1l5x_A SurviVal protein E; str 41.9 38 0.0013 29.9 5.5 38 75-116 1-38 (280)
403 2dvz_A BUGE, putative exported 41.8 1.9E+02 0.0065 25.8 12.3 140 273-437 118-280 (314)
404 3rh0_A Arsenate reductase; oxi 41.7 89 0.0031 24.4 7.1 81 72-158 18-100 (148)
405 3jte_A Response regulator rece 41.7 28 0.00097 26.4 4.3 34 72-111 1-34 (143)
406 3l6u_A ABC-type sugar transpor 41.3 1.7E+02 0.0059 25.1 17.0 216 73-348 7-229 (293)
407 3ea0_A ATPase, para family; al 41.3 35 0.0012 29.0 5.3 40 74-113 3-43 (245)
408 3o1l_A Formyltetrahydrofolate 41.3 1E+02 0.0034 27.5 8.2 73 73-158 104-189 (302)
409 3vps_A TUNA, NAD-dependent epi 41.2 27 0.00091 31.2 4.6 36 73-114 6-41 (321)
410 2ab0_A YAJL; DJ-1/THIJ superfa 41.2 86 0.0029 25.9 7.5 73 74-159 2-75 (205)
411 3h2s_A Putative NADH-flavin re 41.1 29 0.00098 29.0 4.6 33 75-113 1-33 (224)
412 2kyr_A Fructose-like phosphotr 41.1 44 0.0015 24.8 4.8 39 73-113 4-45 (111)
413 3oid_A Enoyl-[acyl-carrier-pro 41.0 52 0.0018 28.4 6.3 35 73-112 2-36 (258)
414 3p2y_A Alanine dehydrogenase/p 40.9 1.2E+02 0.0042 28.0 8.9 47 349-395 258-310 (381)
415 1p3y_1 MRSD protein; flavoprot 40.9 30 0.001 28.7 4.4 39 72-113 6-44 (194)
416 3cx3_A Lipoprotein; zinc-bindi 40.8 58 0.002 28.8 6.7 89 351-443 53-160 (284)
417 4etn_A LMPTP, low molecular we 40.8 71 0.0024 26.1 6.6 84 73-159 33-119 (184)
418 2qr3_A Two-component system re 40.8 28 0.00096 26.2 4.1 34 72-111 1-34 (140)
419 4etm_A LMPTP, low molecular we 40.8 74 0.0025 25.7 6.7 86 72-160 16-108 (173)
420 3qha_A Putative oxidoreductase 40.8 60 0.0021 28.8 6.9 67 73-160 14-80 (296)
421 1u2p_A Ptpase, low molecular w 40.8 93 0.0032 24.7 7.3 83 73-159 3-91 (163)
422 3ec7_A Putative dehydrogenase; 40.6 77 0.0026 29.0 7.8 70 307-389 47-118 (357)
423 1xea_A Oxidoreductase, GFO/IDH 40.6 50 0.0017 29.7 6.4 67 307-388 26-93 (323)
424 3bfv_A CAPA1, CAPB2, membrane 40.5 35 0.0012 29.9 5.2 40 74-113 81-120 (271)
425 3q9s_A DNA-binding response re 40.4 56 0.0019 27.9 6.5 34 71-110 34-67 (249)
426 2f5x_A BUGD; periplasmic bindi 40.3 2E+02 0.0069 25.6 12.3 142 273-437 114-276 (312)
427 1vs1_A 3-deoxy-7-phosphoheptul 39.9 1.9E+02 0.0066 25.3 11.4 99 279-390 45-153 (276)
428 1e6u_A GDP-fucose synthetase; 39.8 20 0.00067 32.2 3.5 34 72-111 1-34 (321)
429 3ohs_X Trans-1,2-dihydrobenzen 39.7 82 0.0028 28.4 7.7 68 308-389 28-97 (334)
430 1dz3_A Stage 0 sporulation pro 39.6 1.1E+02 0.0037 22.3 8.0 109 309-426 3-123 (130)
431 3sc6_A DTDP-4-dehydrorhamnose 39.5 18 0.00061 31.8 3.1 33 74-112 5-37 (287)
432 3klj_A NAD(FAD)-dependent dehy 39.3 47 0.0016 30.8 6.1 79 75-160 147-229 (385)
433 4eg0_A D-alanine--D-alanine li 39.3 30 0.001 31.1 4.6 39 73-111 12-52 (317)
434 3btv_A Galactose/lactose metab 39.3 1.4E+02 0.0047 28.2 9.5 71 307-389 48-126 (438)
435 2wqk_A 5'-nucleotidase SURE; S 39.2 44 0.0015 29.0 5.4 39 74-116 1-39 (251)
436 1gsa_A Glutathione synthetase; 39.2 27 0.00094 31.0 4.4 39 75-113 2-41 (316)
437 2z1m_A GDP-D-mannose dehydrata 39.1 33 0.0011 30.9 5.0 37 72-114 1-37 (345)
438 1zco_A 2-dehydro-3-deoxyphosph 39.1 1.9E+02 0.0066 25.0 11.8 104 273-390 25-138 (262)
439 3dm5_A SRP54, signal recogniti 38.8 1.8E+02 0.0063 27.5 10.0 68 90-159 114-191 (443)
440 3i4f_A 3-oxoacyl-[acyl-carrier 38.6 64 0.0022 27.7 6.6 34 75-113 7-40 (264)
441 2o8n_A APOA-I binding protein; 38.6 40 0.0014 29.5 5.1 37 75-114 80-116 (265)
442 3n0v_A Formyltetrahydrofolate 38.4 1.3E+02 0.0044 26.6 8.4 73 73-158 89-174 (286)
443 8abp_A L-arabinose-binding pro 38.2 2E+02 0.0068 24.9 14.9 39 74-112 2-40 (306)
444 3nbm_A PTS system, lactose-spe 38.1 44 0.0015 24.6 4.5 37 73-111 5-41 (108)
445 2gwr_A DNA-binding response re 37.9 92 0.0031 26.2 7.4 32 73-110 4-35 (238)
446 2oqr_A Sensory transduction pr 37.9 1.3E+02 0.0043 24.9 8.3 109 309-426 5-121 (230)
447 1h6d_A Precursor form of gluco 37.7 81 0.0028 29.8 7.6 83 67-163 76-163 (433)
448 1dc7_A NTRC, nitrogen regulati 37.6 45 0.0015 24.2 4.8 107 310-425 5-120 (124)
449 3kjh_A CO dehydrogenase/acetyl 37.4 26 0.00088 30.0 3.7 36 75-114 1-38 (254)
450 4hkt_A Inositol 2-dehydrogenas 37.4 89 0.003 28.1 7.6 74 73-163 2-76 (331)
451 4id9_A Short-chain dehydrogena 37.4 32 0.0011 31.2 4.5 37 72-114 17-53 (347)
452 3d3k_A Enhancer of mRNA-decapp 37.0 52 0.0018 28.7 5.5 37 75-114 86-122 (259)
453 1kgs_A DRRD, DNA binding respo 36.9 43 0.0015 27.8 5.1 32 73-110 1-32 (225)
454 3dqp_A Oxidoreductase YLBE; al 36.8 34 0.0012 28.5 4.4 33 75-113 1-33 (219)
455 3r6d_A NAD-dependent epimerase 36.7 41 0.0014 28.1 4.8 24 90-113 15-39 (221)
456 1rcu_A Conserved hypothetical 36.4 54 0.0019 27.1 5.3 36 72-107 21-61 (195)
457 1kjq_A GART 2, phosphoribosylg 36.3 44 0.0015 30.9 5.4 35 73-114 10-44 (391)
458 3lou_A Formyltetrahydrofolate 35.9 1.5E+02 0.0053 26.2 8.5 73 73-158 94-179 (292)
459 3ghy_A Ketopantoate reductase 35.8 29 0.001 31.5 4.0 34 72-112 1-34 (335)
460 3ic5_A Putative saccharopine d 35.7 51 0.0017 23.8 4.8 32 74-112 5-37 (118)
461 3d3j_A Enhancer of mRNA-decapp 35.6 57 0.002 29.2 5.7 37 75-114 133-169 (306)
462 1u9c_A APC35852; structural ge 35.5 74 0.0025 26.7 6.3 42 74-115 5-53 (224)
463 4hb9_A Similarities with proba 35.4 34 0.0012 31.7 4.5 30 75-111 2-31 (412)
464 1toa_A Tromp-1, protein (perip 35.3 1.1E+02 0.0036 27.5 7.5 87 352-443 83-178 (313)
465 1y1p_A ARII, aldehyde reductas 35.3 53 0.0018 29.5 5.7 36 71-112 8-43 (342)
466 3ezl_A Acetoacetyl-COA reducta 35.2 1.4E+02 0.0047 25.4 8.2 24 90-113 23-46 (256)
467 3lk7_A UDP-N-acetylmuramoylala 35.2 1.7E+02 0.0057 27.7 9.4 72 73-158 8-80 (451)
468 1z7e_A Protein aRNA; rossmann 35.2 82 0.0028 31.7 7.5 77 75-158 1-83 (660)
469 1u0t_A Inorganic polyphosphate 35.1 40 0.0014 30.2 4.7 38 74-112 4-41 (307)
470 1wcv_1 SOJ, segregation protei 35.1 31 0.0011 29.8 3.9 39 74-114 5-45 (257)
471 3l9w_A Glutathione-regulated p 35.0 1.2E+02 0.004 28.5 8.1 71 74-160 4-78 (413)
472 2w70_A Biotin carboxylase; lig 35.0 38 0.0013 32.2 4.8 33 74-113 2-34 (449)
473 3u3x_A Oxidoreductase; structu 35.0 68 0.0023 29.4 6.4 81 69-163 21-101 (361)
474 3mz0_A Inositol 2-dehydrogenas 34.9 1.1E+02 0.0039 27.6 7.9 77 73-163 1-79 (344)
475 3vk5_A MOEO5; TIM barrel, tran 34.8 60 0.0021 28.6 5.5 77 278-365 44-125 (286)
476 1sbz_A Probable aromatic acid 34.8 61 0.0021 26.9 5.3 36 75-113 1-37 (197)
477 2cwd_A Low molecular weight ph 34.5 1.3E+02 0.0044 23.8 7.2 84 73-159 3-92 (161)
478 3e18_A Oxidoreductase; dehydro 34.5 1.4E+02 0.0048 27.2 8.5 68 306-389 27-96 (359)
479 3l3b_A ES1 family protein; ssg 34.3 65 0.0022 27.7 5.7 43 73-115 22-66 (242)
480 2p2s_A Putative oxidoreductase 34.3 1E+02 0.0035 27.8 7.4 68 307-388 27-96 (336)
481 1n7h_A GDP-D-mannose-4,6-dehyd 34.3 46 0.0016 30.6 5.2 33 75-113 29-61 (381)
482 3s2y_A Chromate reductase; ura 40.5 8.5 0.00029 32.2 0.0 39 73-112 5-45 (199)
483 3cio_A ETK, tyrosine-protein k 34.2 51 0.0018 29.3 5.3 41 74-114 103-143 (299)
484 2ydy_A Methionine adenosyltran 34.2 37 0.0013 30.2 4.4 33 74-112 2-34 (315)
485 3nva_A CTP synthase; rossman f 34.2 3.3E+02 0.011 26.4 21.2 163 204-388 208-385 (535)
486 2l17_A Synarsc, arsenate reduc 34.2 1.1E+02 0.0038 23.3 6.5 77 74-157 4-82 (134)
487 4dim_A Phosphoribosylglycinami 34.1 33 0.0011 32.0 4.2 35 71-112 4-38 (403)
488 4fu0_A D-alanine--D-alanine li 34.0 27 0.00093 32.1 3.5 38 72-112 1-43 (357)
489 1vl8_A Gluconate 5-dehydrogena 34.0 49 0.0017 28.7 5.0 23 90-112 31-53 (267)
490 2fek_A Low molecular weight pr 33.8 1.3E+02 0.0045 24.0 7.1 81 74-160 22-105 (167)
491 1evy_A Glycerol-3-phosphate de 33.8 34 0.0012 31.5 4.1 34 72-112 12-46 (366)
492 2qs7_A Uncharacterized protein 33.7 51 0.0018 25.6 4.5 39 74-113 7-45 (144)
493 3ujp_A Mn transporter subunit; 33.5 74 0.0025 28.5 6.1 88 351-443 75-171 (307)
494 4e12_A Diketoreductase; oxidor 33.4 47 0.0016 29.2 4.8 33 72-111 2-34 (283)
495 1pjq_A CYSG, siroheme synthase 33.3 1.4E+02 0.0048 28.4 8.5 71 72-158 10-80 (457)
496 2z1d_A Hydrogenase expression/ 33.3 75 0.0026 29.0 5.9 83 305-389 136-227 (372)
497 1vr6_A Phospho-2-dehydro-3-deo 33.3 2.8E+02 0.0096 25.2 12.6 101 276-390 110-221 (350)
498 3i12_A D-alanine-D-alanine lig 33.2 28 0.00097 32.1 3.5 42 72-113 1-44 (364)
499 1qo0_D AMIR; binding protein, 33.2 1.9E+02 0.0063 23.1 12.3 108 307-427 11-126 (196)
500 3hn7_A UDP-N-acetylmuramate-L- 33.2 2.4E+02 0.0083 27.3 10.3 71 73-158 18-88 (524)
No 1
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=2.6e-46 Score=369.86 Aligned_cols=365 Identities=18% Similarity=0.206 Sum_probs=276.5
Q ss_pred cccccEEEEEeeccCC---------CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC
Q 012132 71 FMKSKLVLLVSHELSL---------SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG 141 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~---------~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (470)
..+|||||+++..++| ||.++++.+++++|.++||+|++++......... ......++.++....
T Consensus 17 ~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~------~~~~~~~v~v~~~~~ 90 (438)
T 3c48_A 17 RGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGE------IVRVAENLRVINIAA 90 (438)
T ss_dssp --CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCS------EEEEETTEEEEEECC
T ss_pred CcchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCcc------cccccCCeEEEEecC
Confidence 4467899999987654 6778999999999999999999999654321100 000112343332210
Q ss_pred --------------h----hhH----Hhhc-CCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc------
Q 012132 142 --------------Q----ETI----NTAL-KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF------ 192 (470)
Q Consensus 142 --------------~----~~~----~~~~-~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~------ 192 (470)
. ..+ .+.. +||+||+|..........+.+. ...|++++.|+......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~----~~~p~v~~~h~~~~~~~~~~~~~ 166 (438)
T 3c48_A 91 GPYEGLSKEELPTQLAAFTGGMLSFTRREKVTYDLIHSHYWLSGQVGWLLRDL----WRIPLIHTAHTLAAVKNSYRDDS 166 (438)
T ss_dssp SCSSSCCGGGGGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHH----HTCCEEEECSSCHHHHSCC----
T ss_pred CCccccchhHHHHHHHHHHHHHHHHHHhccCCCCEEEeCCccHHHHHHHHHHH----cCCCEEEEecCCccccccccccc
Confidence 0 011 1222 5999999975433222211111 12578888998632110
Q ss_pred --------hhhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHc
Q 012132 193 --------KLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESL 264 (470)
Q Consensus 193 --------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~ 264 (470)
.......+...+.+++.|....+.+.+ .++++..++.+||||+|.+.|.+.... .++.+|+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~----~~g~~~~k~~vi~ngvd~~~~~~~~~~-----~~~~~r~~~ 237 (438)
T 3c48_A 167 DTPESEARRICEQQLVDNADVLAVNTQEEMQDLMH----HYDADPDRISVVSPGADVELYSPGNDR-----ATERSRREL 237 (438)
T ss_dssp CCHHHHHHHHHHHHHHHHCSEEEESSHHHHHHHHH----HHCCCGGGEEECCCCCCTTTSCCC---------CHHHHHHT
T ss_pred CCcchHHHHHHHHHHHhcCCEEEEcCHHHHHHHHH----HhCCChhheEEecCCccccccCCcccc-----hhhhhHHhc
Confidence 001123345677888888877666553 578888899999999999887654211 124578899
Q ss_pred CCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCC--ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEE
Q 012132 265 GVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP--SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH 342 (470)
Q Consensus 265 ~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~--~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~ 342 (470)
+++++.++|+++||+.+.||++.+++|++.+.+ ++| +++|+|+|+... ..++.+.++++++++++.++|+
T Consensus 238 ~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~-------~~p~~~~~l~i~G~~~~-~g~~~~~l~~~~~~~~l~~~v~ 309 (438)
T 3c48_A 238 GIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFD-------RDPDRNLRVIICGGPSG-PNATPDTYRHMAEELGVEKRIR 309 (438)
T ss_dssp TCCSSSEEEEEESCBSGGGCHHHHHHHHHHHHH-------HCTTCSEEEEEECCBC-------CHHHHHHHHTTCTTTEE
T ss_pred CCCCCCcEEEEEeeecccCCHHHHHHHHHHHHh-------hCCCcceEEEEEeCCCC-CCcHHHHHHHHHHHcCCCCcEE
Confidence 998899999999999999999999999998865 334 899999998110 0057889999999999999999
Q ss_pred Eeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHH
Q 012132 343 FVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNI 420 (470)
Q Consensus 343 ~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i 420 (470)
|+|++ +++.++|+.||++|+||. .|+||++++|||+||+|||+++.|+..|++.++.+|++++++| +++++++|
T Consensus 310 ~~g~~~~~~~~~~~~~adv~v~ps~--~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d--~~~la~~i 385 (438)
T 3c48_A 310 FLDPRPPSELVAVYRAADIVAVPSF--NESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHS--PHAWADAL 385 (438)
T ss_dssp EECCCCHHHHHHHHHHCSEEEECCS--CCSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEESSCC--HHHHHHHH
T ss_pred EcCCCChHHHHHHHHhCCEEEECcc--ccCCchHHHHHHHcCCCEEecCCCChhHHhhCCCcEEECCCCC--HHHHHHHH
Confidence 99997 789999999999999998 8999999999999999999999999999999999999999988 99999999
Q ss_pred HHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHhhhc
Q 012132 421 VKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKS 467 (470)
Q Consensus 421 ~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~~~~ 467 (470)
.++++|++.++++++++++++.+ |+|+.+++++.++|++++.+.+.
T Consensus 386 ~~l~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3c48_A 386 ATLLDDDETRIRMGEDAVEHART-FSWAATAAQLSSLYNDAIANENV 431 (438)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHcCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999988 99999999999999999987543
No 2
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=2.3e-46 Score=370.12 Aligned_cols=366 Identities=16% Similarity=0.111 Sum_probs=281.7
Q ss_pred cccEEEEEeeccCC---CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhh----------hhhhhhcceeeEec
Q 012132 73 KSKLVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSL----------EHKMWDRGVQVISA 139 (470)
Q Consensus 73 ~~~kIl~v~~~~~~---~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 139 (470)
++||||++++.+++ ||.++++.+|+++|+++||+|+|+++..+.........+ .......|+.++..
T Consensus 1 r~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~ 80 (439)
T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYRI 80 (439)
T ss_dssp CCCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETTEEEEEE
T ss_pred CceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEecCCCCchhhhhccccccCcccceeeeeccCCCceEEEe
Confidence 46899999988655 777999999999999999999999965543221000000 00002345555443
Q ss_pred CC----------------hh----------hHHh-----hcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeec
Q 012132 140 KG----------------QE----------TINT-----ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR 188 (470)
Q Consensus 140 ~~----------------~~----------~~~~-----~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 188 (470)
.. .. .+.+ ..+||+||+|+.........+.+. ...|+++++|+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~----~~~~~v~~~h~~~ 156 (439)
T 3fro_A 81 GGGLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKKY----FKIPAVFTIHRLN 156 (439)
T ss_dssp ESGGGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGGHHHHHHHHHH----HCCCEEEEESCCC
T ss_pred cchhccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchhhhhhHHHHhhc----cCCCEEEEecccc
Confidence 22 00 1111 459999999986544332222221 2257899999875
Q ss_pred cccch------------------hhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhH
Q 012132 189 GHYFK------------------LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDN 250 (470)
Q Consensus 189 ~~~~~------------------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~ 250 (470)
...+. ......+...+.+++.|....+. ....++.+..++.+||||+|.+.|.+...+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~----~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~ 232 (439)
T 3fro_A 157 KSKLPAFYFHEAGLSELAPYPDIDPEHTGGYIADIVTTVSRGYLID----EWGFFRNFEGKITYVFNGIDCSFWNESYLT 232 (439)
T ss_dssp CCCEEHHHHHHTTCGGGCCSSEECHHHHHHHHCSEEEESCHHHHHH----THHHHGGGTTSEEECCCCCCTTTSCGGGSC
T ss_pred cccCchHHhCccccccccccceeeHhhhhhhhccEEEecCHHHHHH----HhhhhhhcCCceeecCCCCCchhcCccccc
Confidence 43211 11223344667788888877655 233556788899999999999998776322
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEEeecc-cCCCHHHHHHHHHHHHHHHHhhcccC--CceEEEEEeCCCCcChHHHHH
Q 012132 251 VAKRVLREHVRESLGVRNEDLLFAIINSVS-RGKGQDLFLHSFYESLELIKEKKLEV--PSVHAVIIGSDMNAQTKFESE 327 (470)
Q Consensus 251 ~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~-~~Kg~~~ll~a~~~l~~~l~~~~~~~--~~~~l~ivG~g~~~~~~~~~~ 327 (470)
......+..+|+++|++++ ++|+++||+. +.||++.+++|++.+.+ +. ++++|+|+|+|.. .+.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~-~~i~~~G~~~~~~Kg~~~li~a~~~l~~-------~~~~~~~~l~i~G~g~~---~~~~~ 301 (439)
T 3fro_A 233 GSRDERKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSS-------KKEFQEMRFIIIGKGDP---ELEGW 301 (439)
T ss_dssp SCHHHHHHHHHHHHTCCSC-EEEEEECCSSCTTBCHHHHHHHHHHHHT-------SGGGGGEEEEEECCCCH---HHHHH
T ss_pred chhhhhHHHHHHHcCCCCC-cEEEEEcccccccccHHHHHHHHHHHHh-------cccCCCeEEEEEcCCCh---hHHHH
Confidence 2233447889999999877 9999999999 99999999999998855 33 7999999999841 34589
Q ss_pred HHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeee
Q 012132 328 LRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLL 405 (470)
Q Consensus 328 l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l 405 (470)
+++++++++ +.+.|.|+. +++.++|+.||++|+||. .|+||++++|||+||+|||+|+.||..|++.++ +|++
T Consensus 302 l~~~~~~~~--~~~~~~g~~~~~~~~~~~~~adv~v~ps~--~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~ 376 (439)
T 3fro_A 302 ARSLEEKHG--NVKVITEMLSREFVRELYGSVDFVIIPSY--FEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGIL 376 (439)
T ss_dssp HHHHHHHCT--TEEEECSCCCHHHHHHHHTTCSEEEECBS--CCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEE
T ss_pred HHHHHhhcC--CEEEEcCCCCHHHHHHHHHHCCEEEeCCC--CCCccHHHHHHHHCCCCeEEcCCCCcceeEEcC-ceEE
Confidence 999999988 788899954 789999999999999999 899999999999999999999999999999877 9999
Q ss_pred ecCCCCChHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHhh
Q 012132 406 HPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 465 (470)
Q Consensus 406 ~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~~ 465 (470)
++++| +++++++|.++++ |++.++++++++++++ ++|||+.+++++.++|++++++.
T Consensus 377 ~~~~d--~~~la~~i~~ll~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~ 434 (439)
T 3fro_A 377 VKAGD--PGELANAILKALELSRSDLSKFRENCKKRA-MSFSWEKSAERYVKAYTGSIDRA 434 (439)
T ss_dssp ECTTC--HHHHHHHHHHHHHHTTTTTHHHHHHHHHHH-HTSCHHHHHHHHHHHHHTCSCCB
T ss_pred eCCCC--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-hhCcHHHHHHHHHHHHHHHHHhh
Confidence 99998 9999999999999 9999999999999999 66999999999999999988654
No 3
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=6e-46 Score=364.67 Aligned_cols=358 Identities=18% Similarity=0.210 Sum_probs=271.0
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC---------
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--------- 141 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 141 (470)
.|++|||+++++....||+++++.+++++|.++||+|++++.............+...+ .+...+....
T Consensus 37 ~~~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 114 (416)
T 2x6q_A 37 KLKGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNAL--QGNESLKLTEEMKELYLNV 114 (416)
T ss_dssp TTTTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHHHHH--TTCCSCCCCHHHHHHHHHH
T ss_pred hhhccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhhhhcccceee--cccccccccHHHHHHHHHH
Confidence 46789999999987678889999999999999999999998654321111111111111 1111111110
Q ss_pred ---hhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch---hhhhccccccccee-eeehhhH
Q 012132 142 ---QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK---LDYVKHLPLVAGAM-IDSHVTA 214 (470)
Q Consensus 142 ---~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~---~~~~~~~~~~~~~~-~~s~~~~ 214 (470)
.....+..+||+||+|++....+.. .... . .|++++.|+....... ....+.+...+.++ +.+....
T Consensus 115 ~~~~~~~l~~~~~Dvv~~~~~~~~~~~~-~~~~----~-~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~ 188 (416)
T 2x6q_A 115 NRENSKFIDLSSFDYVLVHDPQPAALIE-FYEK----K-SPWLWRCHIDLSSPNREFWEFLRRFVEKYDRYIFHLPEYVQ 188 (416)
T ss_dssp HHHHHHSSCGGGSSEEEEESSTTGGGGG-GSCC----C-SCEEEECCSCCSSCCHHHHHHHHHHHTTSSEEEESSGGGSC
T ss_pred HHHHHHHHhhcCCCEEEEeccchhhHHH-HHHh----c-CCEEEEEccccCCccHHHHHHHHHHHHhCCEEEEechHHHH
Confidence 1112234689999999866543322 1111 1 6788999976433211 11222334445544 4443332
Q ss_pred HHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHH
Q 012132 215 EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYE 294 (470)
Q Consensus 215 ~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~ 294 (470)
+ +++..++.+||||+|...+.+.... ...+..+|++++++++.++++++||+.+.||++.+++|++.
T Consensus 189 ~----------~~~~~~~~vi~ngvd~~~~~~~~~~---~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~ 255 (416)
T 2x6q_A 189 P----------ELDRNKAVIMPPSIDPLSEKNVELK---QTEILRILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRK 255 (416)
T ss_dssp T----------TSCTTTEEECCCCBCTTSTTTSCCC---HHHHHHHHHHTTCCTTSCEEEEECCCCTTSCHHHHHHHHHH
T ss_pred h----------hCCccceEEeCCCCChhhhcccccC---hhhHHHHHHHhCCCCCCcEEEEEeccccccCHHHHHHHHHH
Confidence 1 2344789999999998766432111 11256789999999899999999999999999999999998
Q ss_pred HHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccC-----CHHHHHHhcCEEEEccCCccc
Q 012132 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL-----TVAPYLAAIDVLVQNSQAWGE 369 (470)
Q Consensus 295 l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~-----~~~~~~~~aDv~v~pS~~~~E 369 (470)
+.+ +.|+++|+|+|+|...++.+.+.++++++++++.++|+|+|+.. ++.++|+.||++|+||. .|
T Consensus 256 l~~-------~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~--~E 326 (416)
T 2x6q_A 256 VKE-------KIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSI--RE 326 (416)
T ss_dssp HHH-------HCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCS--SC
T ss_pred HHH-------hCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhCCEEEECCC--cC
Confidence 865 45899999999986544456788999999999999999999653 79999999999999999 89
Q ss_pred ccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhH
Q 012132 370 CFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHH 449 (470)
Q Consensus 370 ~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~ 449 (470)
+||++++|||+||+|||+++.||.+|++.++.+|++++ | +++++++|.++++|++.++++++++++++.++|||+.
T Consensus 327 ~~~~~~lEAma~G~PvI~~~~~g~~e~i~~~~~g~l~~--d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~ 402 (416)
T 2x6q_A 327 GFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVR--D--ANEAVEVVLYLLKHPEVSKEMGAKAKERVRKNFIITK 402 (416)
T ss_dssp SSCHHHHHHHHTTCCEEEESCHHHHHHCCBTTTEEEES--S--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTBHHH
T ss_pred CCccHHHHHHHcCCCEEEccCCCChhheecCCCeEEEC--C--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHH
Confidence 99999999999999999999999999999999999998 6 9999999999999999999999999999998999999
Q ss_pred HHHHHHHHHHHHH
Q 012132 450 MAERIAVVLKEVL 462 (470)
Q Consensus 450 ~~~~~~~~~~~~l 462 (470)
+++++.++|++++
T Consensus 403 ~~~~~~~~~~~l~ 415 (416)
T 2x6q_A 403 HMERYLDILNSLG 415 (416)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999865
No 4
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=3.4e-46 Score=363.67 Aligned_cols=355 Identities=20% Similarity=0.240 Sum_probs=282.7
Q ss_pred cccccEEEEEeeccCC--CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC-------
Q 012132 71 FMKSKLVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------- 141 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~--~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 141 (470)
+|++|||+++++.+++ ||+++++.++++.| +||+|+|++........ .......++.++....
T Consensus 1 M~~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 72 (394)
T 3okp_A 1 MSASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEEA------HAYDKTLDYEVIRWPRSVMLPTP 72 (394)
T ss_dssp ---CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHH------HHHHTTCSSEEEEESSSSCCSCH
T ss_pred CCCCceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccch------hhhccccceEEEEccccccccch
Confidence 4678999999998764 67799999999999 69999999976543110 1111345566655332
Q ss_pred -----hhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc-----chhhhhcccccccceeeeeh
Q 012132 142 -----QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-----FKLDYVKHLPLVAGAMIDSH 211 (470)
Q Consensus 142 -----~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~-----~~~~~~~~~~~~~~~~~~s~ 211 (470)
...+.+..+||+||+|......++....+.. ..++++++.|+....+ ........+...+.+++.|.
T Consensus 73 ~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~---~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~ 149 (394)
T 3okp_A 73 TTAHAMAEIIREREIDNVWFGAAAPLALMAGTAKQA---GASKVIASTHGHEVGWSMLPGSRQSLRKIGTEVDVLTYISQ 149 (394)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSCTTGGGGHHHHHHT---TCSEEEEECCSTHHHHTTSHHHHHHHHHHHHHCSEEEESCH
T ss_pred hhHHHHHHHHHhcCCCEEEECCcchHHHHHHHHHhc---CCCcEEEEeccchhhhhhcchhhHHHHHHHHhCCEEEEcCH
Confidence 2355567899999999866554444443321 1145788889753222 11223444567788888888
Q ss_pred hhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHH
Q 012132 212 VTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 291 (470)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a 291 (470)
...+.+.+ .++ ...++.+||||+|.+.|.+... ..+..+|++++++++.++++++||+.+.||++.+++|
T Consensus 150 ~~~~~~~~----~~~-~~~~~~vi~ngv~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a 219 (394)
T 3okp_A 150 YTLRRFKS----AFG-SHPTFEHLPSGVDVKRFTPATP-----EDKSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKA 219 (394)
T ss_dssp HHHHHHHH----HHC-SSSEEEECCCCBCTTTSCCCCH-----HHHHHHHHHTTCCTTCCEEEEESCSCGGGCHHHHHHH
T ss_pred HHHHHHHH----hcC-CCCCeEEecCCcCHHHcCCCCc-----hhhHHHHHhcCCCcCceEEEEEeccccccCHHHHHHH
Confidence 88776665 444 4578999999999998876221 1257789999999888999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcc-
Q 012132 292 FYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWG- 368 (470)
Q Consensus 292 ~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~- 368 (470)
++.+.+ +.++++|+|+|+| ++.+.+++++ .++.++|+|+|++ +++.++|+.||++|+||. .
T Consensus 220 ~~~l~~-------~~~~~~l~i~G~g-----~~~~~l~~~~--~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~--~~ 283 (394)
T 3okp_A 220 MPQVIA-------ARPDAQLLIVGSG-----RYESTLRRLA--TDVSQNVKFLGRLEYQDMINTLAAADIFAMPAR--TR 283 (394)
T ss_dssp HHHHHH-------HSTTCEEEEECCC-----TTHHHHHHHT--GGGGGGEEEEESCCHHHHHHHHHHCSEEEECCC--CB
T ss_pred HHHHHh-------hCCCeEEEEEcCc-----hHHHHHHHHH--hcccCeEEEcCCCCHHHHHHHHHhCCEEEecCc--cc
Confidence 998865 4589999999998 5778888888 5667899999997 899999999999999999 7
Q ss_pred ------cccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 012132 369 ------ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK 442 (470)
Q Consensus 369 ------E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 442 (470)
|+||++++|||++|+|||+++.|+..|++.++ +|++++++| +++++++|.++++|++.++++++++++++.
T Consensus 284 ~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~ 360 (394)
T 3okp_A 284 GGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSD--VDKLSELLIELLDDPIRRAAMGAAGRAHVE 360 (394)
T ss_dssp GGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTC--HHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cccccccccCcHHHHHHHcCCCEEEeCCCChHHHHhcC-CceEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 999999998 999999999999999999999999999999
Q ss_pred HHcChhHHHHHHHHHHHHHHHhh
Q 012132 443 EIFQEHHMAERIAVVLKEVLKKS 465 (470)
Q Consensus 443 ~~fs~~~~~~~~~~~~~~~l~~~ 465 (470)
++|+|+.+++++.++|+++..+.
T Consensus 361 ~~~s~~~~~~~~~~~~~~~~r~~ 383 (394)
T 3okp_A 361 AEWSWEIMGERLTNILQSEPRKL 383 (394)
T ss_dssp HHTBHHHHHHHHHHHHHSCCC--
T ss_pred HhCCHHHHHHHHHHHHHHhccCc
Confidence 99999999999999999987543
No 5
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=1.9e-46 Score=376.86 Aligned_cols=372 Identities=15% Similarity=0.150 Sum_probs=278.3
Q ss_pred cccEEEEEeeccCC-------------CchhHHHHHHHHHHHhCCceEEEEecCCCCCc-hhHHHhhhhhhhhcceeeEe
Q 012132 73 KSKLVLLVSHELSL-------------SGGPLLLMELAFLLRGVGTKVNWITIQKPSEE-DEVIYSLEHKMWDRGVQVIS 138 (470)
Q Consensus 73 ~~~kIl~v~~~~~~-------------~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 138 (470)
++|||+++++.+.| ||+++++.+++++|.++||+|+|++....... ......+.......|+.++.
T Consensus 6 ~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~ 85 (499)
T 2r60_A 6 RIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGEIDYYQETNKVRIVR 85 (499)
T ss_dssp -CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCSEEECTTCSSEEEEE
T ss_pred ccceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccccchhhhHHhccCCCCeEEEE
Confidence 35899999986533 66689999999999999999999996543211 00000000000123555543
Q ss_pred cCC---------------------hhhHHhh--cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch--
Q 012132 139 AKG---------------------QETINTA--LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-- 193 (470)
Q Consensus 139 ~~~---------------------~~~~~~~--~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~-- 193 (470)
... ...+.+. .+||+||+|..........+.+. ...|++++.|+.......
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Divh~~~~~~~~~~~~~~~~----~~~p~v~~~H~~~~~~~~~~ 161 (499)
T 2r60_A 86 IPFGGDKFLPKEELWPYLHEYVNKIINFYREEGKFPQVVTTHYGDGGLAGVLLKNI----KGLPFTFTGHSLGAQKMEKL 161 (499)
T ss_dssp ECCSCSSCCCGGGCGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHH----HCCCEEEECSSCHHHHHHTT
T ss_pred ecCCCcCCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHh----cCCcEEEEccCcccccchhh
Confidence 221 1122233 48999999985433322222211 125788999986321110
Q ss_pred --------------------hhhhcccccccceeeeehhhHHHHHHhhhhh--hc-c----CCCceEEEecCCchhhhhH
Q 012132 194 --------------------LDYVKHLPLVAGAMIDSHVTAEYWKNRTRER--LR-I----KMPDTYVVHLGNSKELMEV 246 (470)
Q Consensus 194 --------------------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~--~~-~----~~~~i~vi~ngvd~~~~~~ 246 (470)
......+...+.+++.|....+.+. +. +| + +..++.|||||+|.+.|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~----~~~~~g~~~~~~~~~ki~vi~ngvd~~~~~~ 237 (499)
T 2r60_A 162 NVNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQY----SHDLYRGAVNVEDDDKFSVIPPGVNTRVFDG 237 (499)
T ss_dssp CCCSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTT----TSGGGTTTCCTTCGGGEEECCCCBCTTTSSS
T ss_pred ccCCCCcchhhhhHHHHHHHHHHHHHHhcCCEEEECCHHHHHHHH----hhhcccccccccCCCCeEEECCCcChhhcCc
Confidence 0112334566777887877755443 34 56 5 6778999999999998876
Q ss_pred hhhHHHHHHHHHHHHHHcC-----CCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCc-
Q 012132 247 AEDNVAKRVLREHVRESLG-----VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA- 320 (470)
Q Consensus 247 ~~~~~~~~~~~~~~r~~~~-----~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~- 320 (470)
.... ..+..+|+++| ++.+.++|+++||+.+.||++.+++|++.+.+..+ ...+++|+|++...
T Consensus 238 ~~~~----~~~~~~r~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~------~~~~l~i~G~~~~~~ 307 (499)
T 2r60_A 238 EYGD----KIKAKITKYLERDLGSERMELPAIIASSRLDQKKNHYGLVEAYVQNKELQD------KANLVLTLRGIENPF 307 (499)
T ss_dssp CCCH----HHHHHHHHHHHHHSCGGGTTSCEEEECSCCCGGGCHHHHHHHHHTCHHHHH------HCEEEEEESSCSBTT
T ss_pred cchh----hhHHHHHHHhcccccccCCCCcEEEEeecCccccCHHHHHHHHHHHHHhCC------CceEEEEECCCCCcc
Confidence 4321 12466788888 77888999999999999999999999998865321 23689999983111
Q ss_pred ---------ChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhc----CEEEEccCCcccccchHHHHHHhcCCCE
Q 012132 321 ---------QTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAI----DVLVQNSQAWGECFGRITIEAMAFQLPV 385 (470)
Q Consensus 321 ---------~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~a----Dv~v~pS~~~~E~~g~~~lEAma~G~Pv 385 (470)
+.+|.++++++++++++.++|+|+|++ +++.++|+.| |++|+||. .|+||++++|||+||+||
T Consensus 308 ~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~--~Eg~~~~~lEAma~G~Pv 385 (499)
T 2r60_A 308 EDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSF--YEPFGLAPVEAMASGLPA 385 (499)
T ss_dssp TBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCS--CBCCCSHHHHHHHTTCCE
T ss_pred cccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcc--cCCCCcHHHHHHHcCCCE
Confidence 112388999999999999999999996 8899999999 99999999 899999999999999999
Q ss_pred EecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHhh
Q 012132 386 LGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 465 (470)
Q Consensus 386 I~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~~ 465 (470)
|+|+.||.+|++.++.+|++++++| +++++++|.++++|++.++++++++++++.++|||+++++++.++|++++.+.
T Consensus 386 I~s~~~g~~e~v~~~~~g~l~~~~d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~~~~ 463 (499)
T 2r60_A 386 VVTRNGGPAEILDGGKYGVLVDPED--PEDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIADRK 463 (499)
T ss_dssp EEESSBHHHHHTGGGTSSEEECTTC--HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHHHHC-
T ss_pred EEecCCCHHHHhcCCceEEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999998 99999999999999999999999999999999999999999999999998764
Q ss_pred h
Q 012132 466 K 466 (470)
Q Consensus 466 ~ 466 (470)
.
T Consensus 464 ~ 464 (499)
T 2r60_A 464 D 464 (499)
T ss_dssp -
T ss_pred h
Confidence 3
No 6
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=6.8e-45 Score=354.58 Aligned_cols=349 Identities=19% Similarity=0.228 Sum_probs=268.5
Q ss_pred EEEeeccCC-CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEec-----------------
Q 012132 78 LLVSHELSL-SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA----------------- 139 (470)
Q Consensus 78 l~v~~~~~~-~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 139 (470)
-+....++. ||+++++.+++++|.++||+|++++...+.... ....++.+...
T Consensus 17 ~~~~~~~p~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 87 (394)
T 2jjm_A 17 KIGITCYPSVGGSGVVGTELGKQLAERGHEIHFITSGLPFRLN---------KVYPNIYFHEVTVNQYSVFQYPPYDLAL 87 (394)
T ss_dssp EEEEECCC--CHHHHHHHHHHHHHHHTTCEEEEECSSCC-------------CCCTTEEEECCCCC----CCSCCHHHHH
T ss_pred eeehhcCCCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCccc---------ccCCceEEEecccccccccccccccHHH
Confidence 344444554 667999999999999999999999965432100 00112221110
Q ss_pred -CChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccc------cchhhhhcccccccceeeeehh
Q 012132 140 -KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH------YFKLDYVKHLPLVAGAMIDSHV 212 (470)
Q Consensus 140 -~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~------~~~~~~~~~~~~~~~~~~~s~~ 212 (470)
.....+.+..+||+||+|......+...+.+.... ...|++++.|+.... .+.......+...+.+++.|..
T Consensus 88 ~~~l~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~~~-~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~ 166 (394)
T 2jjm_A 88 ASKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIG-ERIKIVTTLHGTDITVLGSDPSLNNLIRFGIEQSDVVTAVSHS 166 (394)
T ss_dssp HHHHHHHHHHHTCSEEEECSSTTHHHHHHHHHHHTT-TCSEEEEECCHHHHHTTTTCTTTHHHHHHHHHHSSEEEESCHH
T ss_pred HHHHHHHHHHcCCCEEEEcchhHHHHHHHHHHHhhc-CCCCEEEEEecCcccccCCCHHHHHHHHHHHhhCCEEEECCHH
Confidence 01233445689999999976543333322222111 125788999984321 1122233445677888888888
Q ss_pred hHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHH
Q 012132 213 TAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSF 292 (470)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~ 292 (470)
..+.+.+ .++. ..++.+||||+|.+.|.+.. +..+|++++++++.++++++||+.+.||++.+++|+
T Consensus 167 ~~~~~~~----~~~~-~~~~~vi~ngv~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~ 233 (394)
T 2jjm_A 167 LINETHE----LVKP-NKDIQTVYNFIDERVYFKRD--------MTQLKKEYGISESEKILIHISNFRKVKRVQDVVQAF 233 (394)
T ss_dssp HHHHHHH----HTCC-SSCEEECCCCCCTTTCCCCC--------CHHHHHHTTCC---CEEEEECCCCGGGTHHHHHHHH
T ss_pred HHHHHHH----hhCC-cccEEEecCCccHHhcCCcc--------hHHHHHHcCCCCCCeEEEEeeccccccCHHHHHHHH
Confidence 8766654 3443 57899999999999886542 245778899988889999999999999999999999
Q ss_pred HHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccc
Q 012132 293 YESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFG 372 (470)
Q Consensus 293 ~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g 372 (470)
+.+.+ + ++++|+|+|+| +..++++++++++++.++|.|+|+.+++.++|+.||++|+||. .|+||
T Consensus 234 ~~l~~-------~-~~~~l~i~G~g-----~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~--~e~~~ 298 (394)
T 2jjm_A 234 AKIVT-------E-VDAKLLLVGDG-----PEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSE--KESFG 298 (394)
T ss_dssp HHHHH-------S-SCCEEEEECCC-----TTHHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCSEEEECCS--CCSCC
T ss_pred HHHHh-------h-CCCEEEEECCc-----hHHHHHHHHHHHcCCCCeEEEeCchhhHHHHHHhCCEEEeccc--cCCCc
Confidence 98854 2 56899999998 5678999999999999999999999999999999999999999 99999
Q ss_pred hHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHH
Q 012132 373 RITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAE 452 (470)
Q Consensus 373 ~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~ 452 (470)
++++|||+||+|||+++.||..|++.++.+|++++++| +++++++|.++++|++.++++++++++++.+.|||+++++
T Consensus 299 ~~~~EAma~G~PvI~~~~~~~~e~v~~~~~g~~~~~~d--~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 376 (394)
T 2jjm_A 299 LVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGD--TTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVS 376 (394)
T ss_dssp HHHHHHHHTTCCEEEECCTTSTTTCCBTTTEEEECTTC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHhcCCCEEEecCCChHHHhhcCCceEEeCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999999999999999999998 9999999999999999999999999999988899999999
Q ss_pred HHHHHHHHHHHhhh
Q 012132 453 RIAVVLKEVLKKSK 466 (470)
Q Consensus 453 ~~~~~~~~~l~~~~ 466 (470)
+++++|++++.+.+
T Consensus 377 ~~~~~~~~~~~~~~ 390 (394)
T 2jjm_A 377 QYETIYYDVLRDDK 390 (394)
T ss_dssp HHHHHHHHTC----
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999987643
No 7
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=2e-44 Score=360.99 Aligned_cols=365 Identities=16% Similarity=0.142 Sum_probs=268.7
Q ss_pred cEEEEEeeccCC----CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhh-------------hhh--hhhccee
Q 012132 75 KLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSL-------------EHK--MWDRGVQ 135 (470)
Q Consensus 75 ~kIl~v~~~~~~----~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~-------------~~~--~~~~~~~ 135 (470)
||||++++.++| ||.++++.+|+++|.++||+|+|++...+..... .... ... ....|+.
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 79 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAA-VTDPVKCFEFTDLLGEKADLLEVQHERLD 79 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHH-CCSCEEEEEESCSSSCCEEEEEEEETTEE
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHcCCeEEEEeccccccccc-ccccceeEEEEEecCCeEEEEEEEecCce
Confidence 799999997754 6669999999999999999999999643210000 0000 000 0023555
Q ss_pred eEecCC--------------------------------hhhHH----hhcCCcEEEEcccchhhhHHHHhhhcCCccccc
Q 012132 136 VISAKG--------------------------------QETIN----TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPN 179 (470)
Q Consensus 136 ~~~~~~--------------------------------~~~~~----~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (470)
++.... ...+. +..+||+||+|+...+.. ...+... .....|
T Consensus 80 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiIh~~~~~~~~~-~~~~~~~-~~~~~p 157 (485)
T 1rzu_A 80 LLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAAMT-PVYMRYA-ETPEIP 157 (485)
T ss_dssp EEEEECHHHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHHHTTH-HHHHHHS-SSCCCC
T ss_pred EEEEeChHHhCCCccccCCcccccccchHHHHHHHHHHHHHHHHHhccCCCCCEEEecccchhHH-HHHHhhc-ccCCCC
Confidence 543210 01111 256899999998543332 2222221 112368
Q ss_pred eeeEEeeecccc-ch-------------------------hhhhcccccccceeeeehhhHHHHHHhhhhhhc-------
Q 012132 180 VLWWIHEMRGHY-FK-------------------------LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLR------- 226 (470)
Q Consensus 180 ~~~~~h~~~~~~-~~-------------------------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~------- 226 (470)
+++++|+..... +. ......+...+.++++|....+.+.+. .+|
T Consensus 158 ~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~---~~g~~~~~~~ 234 (485)
T 1rzu_A 158 SLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTA---EFGMGLEGVI 234 (485)
T ss_dssp EEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHHHHHTTSH---HHHTTCHHHH
T ss_pred EEEEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHHHhhcCEEEecCHhHHHHHhcc---ccCcchHHHH
Confidence 899999863211 00 011122345677888887776555431 123
Q ss_pred -cCCCceEEEecCCchhhhhHhhhH-----------HHHHHHHHHHHHHcCCCCC-CeEEEEEeecccCCCHHHHHHHHH
Q 012132 227 -IKMPDTYVVHLGNSKELMEVAEDN-----------VAKRVLREHVRESLGVRNE-DLLFAIINSVSRGKGQDLFLHSFY 293 (470)
Q Consensus 227 -~~~~~i~vi~ngvd~~~~~~~~~~-----------~~~~~~~~~~r~~~~~~~~-~~~i~~vGrl~~~Kg~~~ll~a~~ 293 (470)
.+..++.+||||+|.+.|.+..+. ..+...+..+|+++|++.+ .++|+++||+.+.||++.+++|++
T Consensus 235 ~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~ 314 (485)
T 1rzu_A 235 GSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVD 314 (485)
T ss_dssp HTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHH
T ss_pred HhhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcCCCCCCCeEEEEEccCccccCHHHHHHHHH
Confidence 456789999999999988765321 0112235678999999875 679999999999999999999999
Q ss_pred HHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEE-EecccCC-HHHHHHhcCEEEEccCCccccc
Q 012132 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLT-VAPYLAAIDVLVQNSQAWGECF 371 (470)
Q Consensus 294 ~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~-~~g~~~~-~~~~~~~aDv~v~pS~~~~E~~ 371 (470)
.+.+ ++++|+|+|+|++ ++.+.+++++++++ ++|+ |.|+..+ +..+|+.||++|+||. .|+|
T Consensus 315 ~l~~---------~~~~l~ivG~g~~---~~~~~l~~~~~~~~--~~v~~~~g~~~~~~~~~~~~adv~v~pS~--~E~~ 378 (485)
T 1rzu_A 315 EIVS---------LGGRLVVLGAGDV---ALEGALLAAASRHH--GRVGVAIGYNEPLSHLMQAGCDAIIIPSR--FEPC 378 (485)
T ss_dssp HHHH---------TTCEEEEEECBCH---HHHHHHHHHHHHTT--TTEEEEESCCHHHHHHHHHHCSEEEECCS--CCSS
T ss_pred HHHh---------cCceEEEEeCCch---HHHHHHHHHHHhCC--CcEEEecCCCHHHHHHHHhcCCEEEECcc--cCCC
Confidence 8865 6899999999831 36889999999885 6887 7898744 5899999999999999 8999
Q ss_pred chHHHHHHhcCCCEEecCCCCcceeeecC---------ceeeeecCCCCChHHHHHHHHHHH---hCHHHHHHHHHHHHH
Q 012132 372 GRITIEAMAFQLPVLGTAAGGTTEIVVNG---------TTGLLHPVGKEGITPLAKNIVKLA---THVERRLTMGKRGYE 439 (470)
Q Consensus 372 g~~~lEAma~G~PvI~s~~~g~~e~v~~~---------~~G~l~~~~d~~~~~la~~i~~ll---~~~~~~~~~~~~a~~ 439 (470)
|++++|||+||+|||+|+.||++|++.++ .+|++++++| +++|+++|.+++ +|++.++++++++++
T Consensus 379 ~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d--~~~la~~i~~ll~~~~~~~~~~~~~~~~~~ 456 (485)
T 1rzu_A 379 GLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVT--LDGLKQAIRRTVRYYHDPKLWTQMQKLGMK 456 (485)
T ss_dssp CSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCS--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceEeCCCC--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999988 8999999998 999999999999 799999999999875
Q ss_pred HHHHHcChhHHHHHHHHHHHHHHHhhh
Q 012132 440 RVKEIFQEHHMAERIAVVLKEVLKKSK 466 (470)
Q Consensus 440 ~~~~~fs~~~~~~~~~~~~~~~l~~~~ 466 (470)
+.|||+.+++++.++|++++....
T Consensus 457 ---~~fs~~~~~~~~~~~y~~~~~~~~ 480 (485)
T 1rzu_A 457 ---SDVSWEKSAGLYAALYSQLISKGH 480 (485)
T ss_dssp ---CCCBHHHHHHHHHHHHHHHTC---
T ss_pred ---HhCChHHHHHHHHHHHHHhhCCCC
Confidence 679999999999999999987654
No 8
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=3.3e-44 Score=351.96 Aligned_cols=355 Identities=14% Similarity=0.145 Sum_probs=270.0
Q ss_pred cEEEEEeeccCC-CchhHHHHHHHHHHHhCCceEEEEecCCCCCch-h-H---HHhhhhhhhhccee--eEecCChhhHH
Q 012132 75 KLVLLVSHELSL-SGGPLLLMELAFLLRGVGTKVNWITIQKPSEED-E-V---IYSLEHKMWDRGVQ--VISAKGQETIN 146 (470)
Q Consensus 75 ~kIl~v~~~~~~-~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~-~-~---~~~~~~~~~~~~~~--~~~~~~~~~~~ 146 (470)
|||+++++.++. ||.++++.+|+++|.++ |+|++++........ . . ........ ..+. .+.........
T Consensus 1 MkI~~v~~~~p~~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l 77 (413)
T 3oy2_A 1 MKLIIVGAHSSVPSGYGRVMRAIVPRISKA-HEVIVFGIHAFGRSVHANIEEFDAQTAEHV--RGLNEQGFYYSGLSEFI 77 (413)
T ss_dssp CEEEEEEECTTCCSHHHHHHHHHHHHHTTT-SEEEEEEESCCSCCSCSSSEEEEHHHHHHH--TTCCSTTCCHHHHHHHH
T ss_pred CeEEEecCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEeecCCCcccccccccCCccccccc--cccccccchHHHHHHHH
Confidence 799999988776 55589999999999999 999999854331100 0 0 00000001 1111 01111123445
Q ss_pred hhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhccccccc--ceeeeehhhHHHHHHhhhhh
Q 012132 147 TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVA--GAMIDSHVTAEYWKNRTRER 224 (470)
Q Consensus 147 ~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~~~~~~~~ 224 (470)
+..+||+||+|...............++.. .+.+...|......... ....+...+ .+++.|....+.+.+
T Consensus 78 ~~~~~Div~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ii~~S~~~~~~~~~----- 150 (413)
T 3oy2_A 78 DVHKPDIVMIYNDPIVIGNYLLAMGKCSHR-TKIVLYVDLVSKNIREN-LWWIFSHPKVVGVMAMSKCWISDICN----- 150 (413)
T ss_dssp HHHCCSEEEEEECHHHHHHHHHHGGGCCSC-CEEEEEECCCSBSCCGG-GGGGGGCTTEEEEEESSTHHHHHHHH-----
T ss_pred HhcCCCEEEEcchHHHHHHHHHHhccCCCC-CceeeeccccchhhHHH-HHHHHhccCCceEEEcCHHHHHHHHH-----
Confidence 678999999995433222222222233322 45556666554333222 355566655 888888888776653
Q ss_pred hccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCC--CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhh
Q 012132 225 LRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEK 302 (470)
Q Consensus 225 ~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~ 302 (470)
++. ..++.+||||+|.+.|. ..++++++++ +.++|+++||+.+.||++.+++|++.+.+
T Consensus 151 ~~~-~~~~~vi~ngvd~~~~~-------------~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~~----- 211 (413)
T 3oy2_A 151 YGC-KVPINIVSHFVDTKTIY-------------DARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARFIS----- 211 (413)
T ss_dssp TTC-CSCEEECCCCCCCCCCT-------------THHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHHHHHHHHH-----
T ss_pred cCC-CCceEEeCCCCCHHHHH-------------HHHHhcCCCcccCceEEEEcCCCchhcCcHHHHHHHHHHHH-----
Confidence 455 57899999999998771 2466788877 88999999999999999999999998866
Q ss_pred cccCCceEEEEEeCCCCcC-hHHHHHHHHHHHhcCCCCc-------EEEeccc--CCHHHHHHhcCEEEEccCCcccccc
Q 012132 303 KLEVPSVHAVIIGSDMNAQ-TKFESELRNYVMQKKIQDR-------VHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFG 372 (470)
Q Consensus 303 ~~~~~~~~l~ivG~g~~~~-~~~~~~l~~~~~~~~l~~~-------V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g 372 (470)
+.|+++|+|+|+|.+.. ....+.++++++++|+.++ |.+.|++ +++.++|+.||++|+||. .|+||
T Consensus 212 --~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~--~E~~~ 287 (413)
T 3oy2_A 212 --KYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSS--GEGFG 287 (413)
T ss_dssp --HCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHCSEEEECCS--CCSSC
T ss_pred --hCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHhCCEEEeCCC--cCCCC
Confidence 45899999999985321 1245899999999999987 8888986 589999999999999999 99999
Q ss_pred hHHHHHHhcCCCEEecCCCCcceeeecCce---------------ee--eecCCCCChHHHHHHHHHHHhCHHHHHHHHH
Q 012132 373 RITIEAMAFQLPVLGTAAGGTTEIVVNGTT---------------GL--LHPVGKEGITPLAKNIVKLATHVERRLTMGK 435 (470)
Q Consensus 373 ~~~lEAma~G~PvI~s~~~g~~e~v~~~~~---------------G~--l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~ 435 (470)
++++|||+||+|||+|+.||.+|++.++.+ |+ +++++| +++|+++| ++++|++.++++++
T Consensus 288 ~~~lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d--~~~la~~i-~l~~~~~~~~~~~~ 364 (413)
T 3oy2_A 288 LCSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIID--VDDLVEAF-TFFKDEKNRKEYGK 364 (413)
T ss_dssp HHHHHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECC--HHHHHHHH-HHTTSHHHHHHHHH
T ss_pred cHHHHHHHcCCCEEEcCCCChHHHHccCcccccccccccccccccCcceeeCCCC--HHHHHHHH-HHhcCHHHHHHHHH
Confidence 999999999999999999999999998887 99 999998 99999999 99999999999999
Q ss_pred HHHHHHHHHcChhHHHHHHHHHHHHHHHhh
Q 012132 436 RGYERVKEIFQEHHMAERIAVVLKEVLKKS 465 (470)
Q Consensus 436 ~a~~~~~~~fs~~~~~~~~~~~~~~~l~~~ 465 (470)
++++++.++|||+.++++++++|++++.+.
T Consensus 365 ~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 394 (413)
T 3oy2_A 365 RVQDFVKTKPTWDDISSDIIDFFNSLLRVE 394 (413)
T ss_dssp HHHHHHTTSCCHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhc
Confidence 999999889999999999999999998654
No 9
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=1.1e-43 Score=355.74 Aligned_cols=365 Identities=14% Similarity=0.109 Sum_probs=266.1
Q ss_pred cEEEEEeeccCC----CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHH--------hhh--hhh---hhcceeeE
Q 012132 75 KLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY--------SLE--HKM---WDRGVQVI 137 (470)
Q Consensus 75 ~kIl~v~~~~~~----~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~--------~~~--~~~---~~~~~~~~ 137 (470)
|||+++++.+.| ||.++++.+|+++|.++||+|+|++...+........ .+. ..+ ...|+.++
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~ 80 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVTDAQVVSRRDTFAGHITLLFGHYNGVGIY 80 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEECCHHHHHHCTTCEEEEEECCTTCCEEEEEEEETTEEEE
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHHcCCEEEEEecCccccccccccceeEEEecccCCcEEEEEEEECCcEEE
Confidence 799999987643 6669999999999999999999999653210000000 000 000 01345444
Q ss_pred ecCC--------------------------------hhhHHh----hcCCcEEEEcccchhhhHHHHhhhcCCcccccee
Q 012132 138 SAKG--------------------------------QETINT----ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVL 181 (470)
Q Consensus 138 ~~~~--------------------------------~~~~~~----~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (470)
.... ...+.+ ..+||+||+|+...... ....... ....|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~-~~~~~~~--~~~~p~v 157 (485)
T 2qzs_A 81 LIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAGLA-PAYLAAR--GRPAKSV 157 (485)
T ss_dssp EEECHHHHCCSSCSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSSTTCCCSEEEEETGGGTTH-HHHHHHT--TCSSEEE
T ss_pred EEeChhhccCCCCccCCcccCCCCchHHHHHHHHHHHHHHHHHhccCCCCCEEEeeccchhHH-HHHHhhc--cCCCCEE
Confidence 3210 011122 26899999998654433 2222211 1236889
Q ss_pred eEEeeecccc-ch-------------------------hhhhcccccccceeeeehhhHHHHHHhhhhhhcc--------
Q 012132 182 WWIHEMRGHY-FK-------------------------LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRI-------- 227 (470)
Q Consensus 182 ~~~h~~~~~~-~~-------------------------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-------- 227 (470)
+++|+..... +. ......+...+.+++.|....+.+.+. .++.
T Consensus 158 ~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~---~~~~~~~~~~~~ 234 (485)
T 2qzs_A 158 FTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEP---QFAYGMEGLLQQ 234 (485)
T ss_dssp EEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHHCSEEEESSHHHHHHTTSH---HHHTTCHHHHHH
T ss_pred EEecCccccCCCCHHHHHhcCCCchhcccccccccccccHHHHHHHhcCeEEecCHHHHHHHhcc---ccCcchHHHHHh
Confidence 9999863211 00 011122345677788877776554331 1342
Q ss_pred CC--CceEEEecCCchhhhhHhhhH-----------HHHHHHHHHHHHHcCCCC--CCeEEEEEeecccCCCHHHHHHHH
Q 012132 228 KM--PDTYVVHLGNSKELMEVAEDN-----------VAKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQDLFLHSF 292 (470)
Q Consensus 228 ~~--~~i~vi~ngvd~~~~~~~~~~-----------~~~~~~~~~~r~~~~~~~--~~~~i~~vGrl~~~Kg~~~ll~a~ 292 (470)
+. .++.+||||+|.+.|.+..+. ......+..+|+++|++. +.++|+++||+.+.||++.+++|+
T Consensus 235 ~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~ 314 (485)
T 2qzs_A 235 RHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEAL 314 (485)
T ss_dssp HHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHH
T ss_pred hccCCceEEEecCCCccccCccccccccccccccchhHHHHhHHHHHHHcCCCCCCCCeEEEEeccCccccCHHHHHHHH
Confidence 22 689999999999988764321 011223567899999986 779999999999999999999999
Q ss_pred HHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEE-Eeccc-CCHHHHHHhcCEEEEccCCcccc
Q 012132 293 YESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKT-LTVAPYLAAIDVLVQNSQAWGEC 370 (470)
Q Consensus 293 ~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~-~~g~~-~~~~~~~~~aDv~v~pS~~~~E~ 370 (470)
+.+.+ ++++|+|+|+|++ ++.+.+++++++++ ++|+ |.|+. +++..+|+.||++|+||. .|+
T Consensus 315 ~~l~~---------~~~~l~ivG~g~~---~~~~~l~~~~~~~~--~~v~~~~g~~~~~~~~~~~~adv~v~pS~--~E~ 378 (485)
T 2qzs_A 315 PGLLE---------QGGQLALLGAGDP---VLQEGFLAAAAEYP--GQVGVQIGYHEAFSHRIMGGADVILVPSR--FEP 378 (485)
T ss_dssp HHHHH---------TTCEEEEEEEECH---HHHHHHHHHHHHST--TTEEEEESCCHHHHHHHHHHCSEEEECCS--CCS
T ss_pred HHHhh---------CCcEEEEEeCCch---HHHHHHHHHHHhCC--CcEEEeCCCCHHHHHHHHHhCCEEEECCc--cCC
Confidence 98855 6899999999831 37889999999886 6886 88986 445899999999999999 999
Q ss_pred cchHHHHHHhcCCCEEecCCCCcceeeecC---------ceeeeecCCCCChHHHHHHHHHHH---hCHHHHHHHHHHHH
Q 012132 371 FGRITIEAMAFQLPVLGTAAGGTTEIVVNG---------TTGLLHPVGKEGITPLAKNIVKLA---THVERRLTMGKRGY 438 (470)
Q Consensus 371 ~g~~~lEAma~G~PvI~s~~~g~~e~v~~~---------~~G~l~~~~d~~~~~la~~i~~ll---~~~~~~~~~~~~a~ 438 (470)
||++++|||+||+|||+|+.||.+|++.++ .+|++++++| +++|+++|.+++ +|++.+++++++++
T Consensus 379 ~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d--~~~la~~i~~ll~~~~~~~~~~~~~~~~~ 456 (485)
T 2qzs_A 379 CGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSN--AWSLLRAIRRAFVLWSRPSLWRFVQRQAM 456 (485)
T ss_dssp SCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEECSSS--HHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHCCCCEEECCCCCccceeccCccccccccccceEEECCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999988 8999999998 999999999999 79999999999987
Q ss_pred HHHHHHcChhHHHHHHHHHHHHHHHhhh
Q 012132 439 ERVKEIFQEHHMAERIAVVLKEVLKKSK 466 (470)
Q Consensus 439 ~~~~~~fs~~~~~~~~~~~~~~~l~~~~ 466 (470)
+ +.|||+.++++|.++|++++....
T Consensus 457 ~---~~fs~~~~~~~~~~ly~~~~~~~~ 481 (485)
T 2qzs_A 457 A---MDFSWQVAAKSYRELYYRLKLEHH 481 (485)
T ss_dssp H---CCCCHHHHHHHHHHHHHHHC----
T ss_pred h---hcCCHHHHHHHHHHHHHHhhhhhc
Confidence 5 679999999999999999876543
No 10
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=2.8e-44 Score=347.73 Aligned_cols=348 Identities=15% Similarity=0.114 Sum_probs=266.2
Q ss_pred cEEEEEeeccCC-CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC-------------
Q 012132 75 KLVLLVSHELSL-SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------------- 140 (470)
Q Consensus 75 ~kIl~v~~~~~~-~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 140 (470)
|||+++++.+.+ ||+++++.+++++|+++||+|++++........ .++.++...
T Consensus 1 MkIl~i~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~ 68 (374)
T 2iw1_A 1 MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCP------------KAFELIQVPVKSHTNHGRNAEY 68 (374)
T ss_dssp -CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESEECSCCC------------TTCEEEECCCCCSSHHHHHHHH
T ss_pred CeEEEEEeecCCCcchhhHHHHHHHHHHhCCCeEEEEecCCCCCCC------------CCcEEEEEccCcccchhhHHHH
Confidence 789999988654 667999999999999999999999965322111 133333221
Q ss_pred --ChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchh-h-----hhccc--ccccceeeee
Q 012132 141 --GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL-D-----YVKHL--PLVAGAMIDS 210 (470)
Q Consensus 141 --~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~-~-----~~~~~--~~~~~~~~~s 210 (470)
....+.+..+||+||+|+...+...... . .....+.+++.|+........ . ....+ ...+.+++.|
T Consensus 69 ~~~l~~~i~~~~~Dvv~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 144 (374)
T 2iw1_A 69 YAWVQNHLKEHPADRVVGFNKMPGLDVYFA--A--DVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLT 144 (374)
T ss_dssp HHHHHHHHHHSCCSEEEESSCCTTCSEEEC--C--SCCHHHHHHHHCCHHHHTSHHHHHHHHHHHHHHSTTCCCEEEESC
T ss_pred HHHHHHHHhccCCCEEEEecCCCCceeeec--c--ccccceeeeecccchhhhcHHHHHHHHHHHHHhhccCCcEEEEcC
Confidence 1223446679999999975433211100 0 001122333334322111110 0 11111 2467778888
Q ss_pred hhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHH
Q 012132 211 HVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLH 290 (470)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~ 290 (470)
....+.+.+ .++++..++.+||||+|.+.|.+..... .+..+|+++|+++++++++++||+.+.||++.+++
T Consensus 145 ~~~~~~~~~----~~~~~~~~~~vi~ngv~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~ 216 (374)
T 2iw1_A 145 DKQIADFQK----HYQTEPERFQILPPGIYPDRKYSEQIPN----SREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIE 216 (374)
T ss_dssp HHHHHHHHH----HHCCCGGGEEECCCCCCGGGSGGGSCTT----HHHHHHHHTTCCTTCEEEEEECSCTTTTTHHHHHH
T ss_pred HHHHHHHHH----HhCCChhheEEecCCcCHHhcCcccchh----HHHHHHHHhCCCCCCeEEEEeccchhhcCHHHHHH
Confidence 777665554 6788888999999999999887654221 24678999999989999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccc
Q 012132 291 SFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGEC 370 (470)
Q Consensus 291 a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~ 370 (470)
|++.+.+.. .++++|+|+|+|. .+.++++++++++.++|+|+|+.+++.++|+.||++|+||. .|+
T Consensus 217 a~~~l~~~~------~~~~~l~i~G~g~------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~ps~--~e~ 282 (374)
T 2iw1_A 217 ALASLPESL------RHNTLLFVVGQDK------PRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAY--QEA 282 (374)
T ss_dssp HHHTSCHHH------HHTEEEEEESSSC------CHHHHHHHHHHTCGGGEEEESCCSCHHHHHHHCSEEEECCS--CCS
T ss_pred HHHHhHhcc------CCceEEEEEcCCC------HHHHHHHHHHcCCCCcEEECCCcccHHHHHHhcCEEEeccc--cCC
Confidence 998875421 2689999999983 36788999999999999999999999999999999999999 899
Q ss_pred cchHHHHHHhcCCCEEecCCCCcceeeecCceeeeec-CCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhH
Q 012132 371 FGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHP-VGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHH 449 (470)
Q Consensus 371 ~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~-~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~ 449 (470)
||++++|||+||+|||+++.||..|++.++.+|++++ ++| +++++++|.++++|++.++++++++++++.+ |+|+.
T Consensus 283 ~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 359 (374)
T 2iw1_A 283 AGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFS--QEQLNEVLRKALTQSPLRMAWAENARHYADT-QDLYS 359 (374)
T ss_dssp SCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-SCCSC
T ss_pred cccHHHHHHHCCCCEEEecCCCchhhhccCCceEEeCCCCC--HHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-hhHHH
Confidence 9999999999999999999999999999999999998 778 9999999999999999999999999999975 89999
Q ss_pred HHHHHHHHHHHHHH
Q 012132 450 MAERIAVVLKEVLK 463 (470)
Q Consensus 450 ~~~~~~~~~~~~l~ 463 (470)
+++++.++++..++
T Consensus 360 ~~~~~~~~l~~~l~ 373 (374)
T 2iw1_A 360 LPEKAADIITGGLD 373 (374)
T ss_dssp HHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999987653
No 11
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=2.8e-43 Score=352.56 Aligned_cols=369 Identities=18% Similarity=0.147 Sum_probs=256.6
Q ss_pred cccEEEEEeeccCC----CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHH----h--hhh--------hhhhcce
Q 012132 73 KSKLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY----S--LEH--------KMWDRGV 134 (470)
Q Consensus 73 ~~~kIl~v~~~~~~----~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~----~--~~~--------~~~~~~~ 134 (470)
..|||||++.++.| ||-..++..|.++|+++||+|.|+++..+........ . +.. .....|+
T Consensus 8 ~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 87 (536)
T 3vue_A 8 HHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGV 87 (536)
T ss_dssp CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTTCEEEEEEEEEEETTEEEEEEEEECEETTE
T ss_pred CCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCchhhhhhcccceEEEEEecCceEEEEEEEEEECCc
Confidence 46899999998765 5558999999999999999999999655432110000 0 000 0011222
Q ss_pred eeEecCC----------------------------hh------h---HH-------------hhcCCcEEEEcccchhhh
Q 012132 135 QVISAKG----------------------------QE------T---IN-------------TALKADLIVLNTAVAGKW 164 (470)
Q Consensus 135 ~~~~~~~----------------------------~~------~---~~-------------~~~~~DiV~~~~~~~~~~ 164 (470)
.++.... .+ . +. ...++||+|+|+...+..
T Consensus 88 ~~y~id~~~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~~ddIiH~hDW~t~l~ 167 (536)
T 3vue_A 88 DRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPL 167 (536)
T ss_dssp EEEEEECTTTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCCSCEEEEEESGGGSTH
T ss_pred eEEEecChhhhccccccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhccCCCCEEEEECcchHHHH
Confidence 2221100 00 0 00 013467888998665443
Q ss_pred HHHHhhhc---CCccccceeeEEeeeccccc------h-----h----------------------hhhcccccccceee
Q 012132 165 LDAVLKED---VPRVLPNVLWWIHEMRGHYF------K-----L----------------------DYVKHLPLVAGAMI 208 (470)
Q Consensus 165 ~~~~~~~~---~~~~~~~~~~~~h~~~~~~~------~-----~----------------------~~~~~~~~~~~~~~ 208 (470)
...+.... ......++++|+|+...... . . .....+..++.+++
T Consensus 168 ~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~k~~i~~ad~v~t 247 (536)
T 3vue_A 168 ASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLT 247 (536)
T ss_dssp HHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEEEEHHHHHHHHCSEEEE
T ss_pred HHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccchhHHHHHHHhccEEEE
Confidence 33222111 11123689999997531100 0 0 00112234577788
Q ss_pred eehhhHHHHHHhhhh----hhccCCCceEEEecCCchhhhhHhhh------------HHHHHHHHHHHHHHcCCCC--CC
Q 012132 209 DSHVTAEYWKNRTRE----RLRIKMPDTYVVHLGNSKELMEVAED------------NVAKRVLREHVRESLGVRN--ED 270 (470)
Q Consensus 209 ~s~~~~~~~~~~~~~----~~~~~~~~i~vi~ngvd~~~~~~~~~------------~~~~~~~~~~~r~~~~~~~--~~ 270 (470)
+|...++...+.... .......++.+|+||||.+.|.|..+ ...+...+..+++++|++. +.
T Consensus 248 VS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~gl~~d~~~ 327 (536)
T 3vue_A 248 VSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRKI 327 (536)
T ss_dssp SCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHTTSCCCTTS
T ss_pred cCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhcCCCCCCCC
Confidence 888776655432110 01134578999999999999887532 1233455778889999864 56
Q ss_pred eEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--C
Q 012132 271 LLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--L 348 (470)
Q Consensus 271 ~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~ 348 (470)
++|+++||+.++||++.+++|++++.+ .+.+++++|.|.. +....++.....++ ++|.+.+.. +
T Consensus 328 p~i~~vgRl~~~Kg~~~li~a~~~l~~---------~~~~l~l~G~G~~---~~~~~~~~~~~~~~--~~v~~~~~~~~~ 393 (536)
T 3vue_A 328 PLIAFIGRLEEQKGPDVMAAAIPELMQ---------EDVQIVLLGTGKK---KFEKLLKSMEEKYP--GKVRAVVKFNAP 393 (536)
T ss_dssp CEEEEECCBSGGGCHHHHHHHHHHHTT---------SSCEEEEECCBCH---HHHHHHHHHHHHST--TTEEEECSCCHH
T ss_pred cEEEEEeeccccCChHHHHHHHHHhHh---------hCCeEEEEeccCc---hHHHHHHHHHhhcC--CceEEEEeccHH
Confidence 899999999999999999999998854 6788999998842 35566666666554 678888864 6
Q ss_pred CHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceee----------eecCCCCChHHHHH
Q 012132 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGL----------LHPVGKEGITPLAK 418 (470)
Q Consensus 349 ~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~----------l~~~~d~~~~~la~ 418 (470)
++..+|+.||++|+||+ .|+||++++|||+||+|||+|++||++|+|.|+++|+ ++++.| +++|++
T Consensus 394 ~~~~~~~~aD~~v~PS~--~E~fgl~~lEAma~G~PvI~s~~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d--~~~la~ 469 (536)
T 3vue_A 394 LAHLIMAGADVLAVPSR--FEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSD--VKKVAA 469 (536)
T ss_dssp HHHHHHHHCSEEEECCS--CCSSCSHHHHHHHTTCCEEECSCTHHHHHCCBTTTEEECCCCCSCTTCCCHHH--HHHHHH
T ss_pred HHHHHHHhhheeecccc--cCCCCHHHHHHHHcCCCEEEcCCCCchheeeCCCCccccccCCCceeEECCCC--HHHHHH
Confidence 67889999999999999 9999999999999999999999999999999999998 666677 999999
Q ss_pred HHHHHHh--CHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Q 012132 419 NIVKLAT--HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 462 (470)
Q Consensus 419 ~i~~ll~--~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l 462 (470)
+|.++++ +.+.++++.+++. .+.|||++++++|+++|+++.
T Consensus 470 ai~ral~~~~~~~~~~~~~~am---~~~fSW~~~A~~y~~ly~~L~ 512 (536)
T 3vue_A 470 TLKRAIKVVGTPAYEEMVRNCM---NQDLSWKGPAKNWENVLLGLG 512 (536)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHH---HSCCSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCcHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHHhh
Confidence 9998876 5455677776664 467999999999999999873
No 12
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=5.2e-42 Score=335.50 Aligned_cols=344 Identities=17% Similarity=0.168 Sum_probs=263.4
Q ss_pred ccccEEEEEeeccCC--CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEe-----------
Q 012132 72 MKSKLVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS----------- 138 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~--~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 138 (470)
.++|||+++++.+++ ||+++++.+++++|.++||+|++++......... ......+ .++.
T Consensus 18 ~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~ 90 (406)
T 2gek_A 18 GSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLP------DYVVSGG-KAVPIPYNGSVARLR 90 (406)
T ss_dssp ---CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCC------TTEEECC-CCC------------
T ss_pred CCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCC------cccccCC-cEEeccccCCccccc
Confidence 356899999987654 6668999999999999999999999654432100 0000000 1110
Q ss_pred c-----CChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch-----hhhhcccccccceee
Q 012132 139 A-----KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-----LDYVKHLPLVAGAMI 208 (470)
Q Consensus 139 ~-----~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~-----~~~~~~~~~~~~~~~ 208 (470)
. .....+.+..+||+||+|......+...+.+. ...|++++.|+....... ......+...+.+++
T Consensus 91 ~~~~~~~~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~ 166 (406)
T 2gek_A 91 FGPATHRKVKKWIAEGDFDVLHIHEPNAPSLSMLALQA----AEGPIVATFHTSTTKSLTLSVFQGILRPYHEKIIGRIA 166 (406)
T ss_dssp CCHHHHHHHHHHHHHHCCSEEEEECCCSSSHHHHHHHH----EESSEEEEECCCCCSHHHHHHHHSTTHHHHTTCSEEEE
T ss_pred ccHHHHHHHHHHHHhcCCCEEEECCccchHHHHHHHHh----cCCCEEEEEcCcchhhhhHHHHHHHHHHHHhhCCEEEE
Confidence 0 12334456679999999986654432222221 125788999986433211 111134467788888
Q ss_pred eehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeec-ccCCCHHH
Q 012132 209 DSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV-SRGKGQDL 287 (470)
Q Consensus 209 ~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl-~~~Kg~~~ 287 (470)
.|....+.+.+ .++ ..++ +||||+|.+.+.+.... .+++.+.++++++||+ .+.||++.
T Consensus 167 ~s~~~~~~~~~----~~~--~~~~-vi~~~v~~~~~~~~~~~-------------~~~~~~~~~i~~~G~~~~~~Kg~~~ 226 (406)
T 2gek_A 167 VSDLARRWQME----ALG--SDAV-EIPNGVDVASFADAPLL-------------DGYPREGRTVLFLGRYDEPRKGMAV 226 (406)
T ss_dssp SSHHHHHHHHH----HHS--SCEE-ECCCCBCHHHHHTCCCC-------------TTCSCSSCEEEEESCTTSGGGCHHH
T ss_pred CCHHHHHHHHH----hcC--CCcE-EecCCCChhhcCCCchh-------------hhccCCCeEEEEEeeeCccccCHHH
Confidence 88877766654 333 4578 99999999887654311 2233456899999999 99999999
Q ss_pred HHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccC
Q 012132 288 FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQ 365 (470)
Q Consensus 288 ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~ 365 (470)
+++|+..+.+ +.|+++|+|+|+| +. +.++++++++ .++|+|+|++ +++.++|+.||++|+||.
T Consensus 227 li~a~~~l~~-------~~~~~~l~i~G~~-----~~-~~l~~~~~~~--~~~v~~~g~~~~~~~~~~~~~adv~v~ps~ 291 (406)
T 2gek_A 227 LLAALPKLVA-------RFPDVEILIVGRG-----DE-DELREQAGDL--AGHLRFLGQVDDATKASAMRSADVYCAPHL 291 (406)
T ss_dssp HHHHHHHHHT-------TSTTCEEEEESCS-----CH-HHHHHHTGGG--GGGEEECCSCCHHHHHHHHHHSSEEEECCC
T ss_pred HHHHHHHHHH-------HCCCeEEEEEcCC-----cH-HHHHHHHHhc--cCcEEEEecCCHHHHHHHHHHCCEEEecCC
Confidence 9999998855 4589999999998 45 7888888876 6799999987 567999999999999985
Q ss_pred CcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHc
Q 012132 366 AWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIF 445 (470)
Q Consensus 366 ~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~f 445 (470)
+.|+||++++|||+||+|||+++.||..|++.++.+|++++++| +++++++|.++++|++.+.++++++++++. .|
T Consensus 292 -~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~-~~ 367 (406)
T 2gek_A 292 -GGESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDD--ADGMAAALIGILEDDQLRAGYVARASERVH-RY 367 (406)
T ss_dssp -SCCSSCHHHHHHHHHTCEEEECCCHHHHHHHTTTTSSEECCTTC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHGG-GG
T ss_pred -CCCCCchHHHHHHHcCCCEEEecCCcHHHHhcCCCceEEeCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-hC
Confidence 38999999999999999999999999999999999999999988 999999999999999999999999999998 89
Q ss_pred ChhHHHHHHHHHHHHHHHhh
Q 012132 446 QEHHMAERIAVVLKEVLKKS 465 (470)
Q Consensus 446 s~~~~~~~~~~~~~~~l~~~ 465 (470)
+|+++++++.++|++++...
T Consensus 368 s~~~~~~~~~~~~~~~~~~~ 387 (406)
T 2gek_A 368 DWSVVSAQIMRVYETVSGAG 387 (406)
T ss_dssp BHHHHHHHHHHHHHHHCCTT
T ss_pred CHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999998654
No 13
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=5.8e-42 Score=327.32 Aligned_cols=309 Identities=17% Similarity=0.109 Sum_probs=246.0
Q ss_pred ccccEEEEEeec-----------cCC---CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeE
Q 012132 72 MKSKLVLLVSHE-----------LSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI 137 (470)
Q Consensus 72 ~~~~kIl~v~~~-----------~~~---~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (470)
|++|||+++++. +++ ||+++++.+++++|.++||+|++++....... ..++.++
T Consensus 1 M~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~------------~~~~~~~ 68 (342)
T 2iuy_A 1 MRPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAG------------RPGLTVV 68 (342)
T ss_dssp --CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCC------------STTEEEC
T ss_pred CCccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCC------------CCcceec
Confidence 567999999998 232 66689999999999999999999996644321 1234443
Q ss_pred ecC---ChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhH
Q 012132 138 SAK---GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTA 214 (470)
Q Consensus 138 ~~~---~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 214 (470)
+.. ....+.+..+||+||+|........ . .....| +++.|+...... ..+.+++.|....
T Consensus 69 ~~~~~~~l~~~l~~~~~Dvi~~~~~~~~~~~----~---~~~~~p-v~~~h~~~~~~~---------~~d~ii~~S~~~~ 131 (342)
T 2iuy_A 69 PAGEPEEIERWLRTADVDVVHDHSGGVIGPA----G---LPPGTA-FISSHHFTTRPV---------NPVGCTYSSRAQR 131 (342)
T ss_dssp SCCSHHHHHHHHHHCCCSEEEECSSSSSCST----T---CCTTCE-EEEEECSSSBCS---------CCTTEEESCHHHH
T ss_pred cCCcHHHHHHHHHhcCCCEEEECCchhhHHH----H---hhcCCC-EEEecCCCCCcc---------cceEEEEcCHHHH
Confidence 333 2345556689999999986654332 1 112356 899998754321 2678888888776
Q ss_pred HHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHH
Q 012132 215 EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYE 294 (470)
Q Consensus 215 ~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~ 294 (470)
+.+.+ ..++.+||||+|.+.|.+... .. .+..+++++||+.+.||++.+++|++.
T Consensus 132 ~~~~~---------~~~~~vi~ngvd~~~~~~~~~---------------~~-~~~~~i~~vG~~~~~Kg~~~li~a~~~ 186 (342)
T 2iuy_A 132 AHCGG---------GDDAPVIPIPVDPARYRSAAD---------------QV-AKEDFLLFMGRVSPHKGALEAAAFAHA 186 (342)
T ss_dssp HHTTC---------CTTSCBCCCCBCGGGSCCSTT---------------CC-CCCSCEEEESCCCGGGTHHHHHHHHHH
T ss_pred HHHhc---------CCceEEEcCCCChhhcCcccc---------------cC-CCCCEEEEEeccccccCHHHHHHHHHh
Confidence 55432 567999999999988765431 11 345678999999999999999999986
Q ss_pred HHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCC------
Q 012132 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA------ 366 (470)
Q Consensus 295 l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~------ 366 (470)
+ +++|+|+|+| +..+.+++++++++ ++|+|+|++ +++.++|+.||++|+||..
T Consensus 187 ~------------~~~l~i~G~g-----~~~~~l~~~~~~~~--~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~ 247 (342)
T 2iuy_A 187 C------------GRRLVLAGPA-----WEPEYFDEITRRYG--STVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWG 247 (342)
T ss_dssp H------------TCCEEEESCC-----CCHHHHHHHHHHHT--TTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTC
T ss_pred c------------CcEEEEEeCc-----ccHHHHHHHHHHhC--CCEEEeccCCHHHHHHHHHhCCEEEECCcccccccc
Confidence 4 6899999998 46788888888887 799999997 4669999999999999971
Q ss_pred --cccccchHHHHHHhcCCCEEecCCCCcceeeec--CceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 012132 367 --WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK 442 (470)
Q Consensus 367 --~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~--~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 442 (470)
|.|+||++++|||+||+|||+++.||.+|++.+ +.+|+++++ | +++++++|.++++ ++++++++.
T Consensus 248 ~~~~E~~~~~~~EAma~G~PvI~s~~~~~~e~~~~~~~~~g~~~~~-d--~~~l~~~i~~l~~--------~~~~~~~~~ 316 (342)
T 2iuy_A 248 GIWCEPGATVVSEAAVSGTPVVGTGNGCLAEIVPSVGEVVGYGTDF-A--PDEARRTLAGLPA--------SDEVRRAAV 316 (342)
T ss_dssp SCCCCCCCHHHHHHHHTTCCEEECCTTTHHHHGGGGEEECCSSSCC-C--HHHHHHHHHTSCC--------HHHHHHHHH
T ss_pred cccccCccHHHHHHHhcCCCEEEcCCCChHHHhcccCCCceEEcCC-C--HHHHHHHHHHHHH--------HHHHHHHHH
Confidence 269999999999999999999999999999999 899999999 8 9999999999986 678889998
Q ss_pred HHcChhHHHHHHHHHHHHHHHh
Q 012132 443 EIFQEHHMAERIAVVLKEVLKK 464 (470)
Q Consensus 443 ~~fs~~~~~~~~~~~~~~~l~~ 464 (470)
++|||+++++++.++|++++++
T Consensus 317 ~~~s~~~~~~~~~~~~~~~~~~ 338 (342)
T 2iuy_A 317 RLWGHVTIAERYVEQYRRLLAG 338 (342)
T ss_dssp HHHBHHHHHHHHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHHHHHcc
Confidence 8999999999999999999875
No 14
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=1.1e-41 Score=351.37 Aligned_cols=375 Identities=14% Similarity=0.160 Sum_probs=264.3
Q ss_pred cccEEEEEeeccC---------C-Cch-hHHHH--------HHHHHHHhCCceEE----EEecCCCCCchh-HHHhhhhh
Q 012132 73 KSKLVLLVSHELS---------L-SGG-PLLLM--------ELAFLLRGVGTKVN----WITIQKPSEEDE-VIYSLEHK 128 (470)
Q Consensus 73 ~~~kIl~v~~~~~---------~-~G~-~~~~~--------~l~~~L~~~G~~V~----v~~~~~~~~~~~-~~~~~~~~ 128 (470)
|.++|++++.... + .|| ..++. +|++.|+++||+|+ |+|...+..... ........
T Consensus 277 ~~~~i~~is~hg~~~~~~~lG~~dtGGq~vyV~e~~~al~~ela~~L~~~G~~V~~~V~v~Tr~~~~~~g~~y~~~~e~i 356 (816)
T 3s28_A 277 MVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERV 356 (816)
T ss_dssp CCCEEEEECCSSCCCSSSCTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECCTTCTTSSTTSSEEEC
T ss_pred ceeEEEEEcCCcccCccccCCCCCCCCceeeHHHHHHHHHHHHHHHHHHCCCccceeeEEEeCCCCCCCCCccCCcceee
Confidence 5689999998753 3 455 67887 47777788999886 888543322110 00000111
Q ss_pred hhhcceeeEecCCh---------------------------hhHHh--hcCCcEEEEcccchhhhHHHHhhhcCCccccc
Q 012132 129 MWDRGVQVISAKGQ---------------------------ETINT--ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPN 179 (470)
Q Consensus 129 ~~~~~~~~~~~~~~---------------------------~~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (470)
-...|+.+++.+.. ..+.. ..+||+||+|....+.....+.+. ...|
T Consensus 357 ~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~il~~~~~~PDVIHsH~~~sglva~llar~----~gvP 432 (816)
T 3s28_A 357 YDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDGNLVASLLAHK----LGVT 432 (816)
T ss_dssp TTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHHHHHHCSSCCSEEEEEHHHHHHHHHHHHHH----HTCC
T ss_pred cCcCCeEEEEecCCCccccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCchHHHHHHHHHHH----cCCC
Confidence 11134555433210 01111 247999999975544332222221 1257
Q ss_pred eeeEEeeeccccch-------h---h---------hhcccccccceeeeehhhHHHHHHh---hhhh-------------
Q 012132 180 VLWWIHEMRGHYFK-------L---D---------YVKHLPLVAGAMIDSHVTAEYWKNR---TRER------------- 224 (470)
Q Consensus 180 ~~~~~h~~~~~~~~-------~---~---------~~~~~~~~~~~~~~s~~~~~~~~~~---~~~~------------- 224 (470)
++++.|+....... . . ....+..++.+++.|....+.+.+. +...
T Consensus 433 ~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~ 512 (816)
T 3s28_A 433 QCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVH 512 (816)
T ss_dssp EEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEESCHHHHHCCSSSCCTTGGGSSEEETTTEEEEE
T ss_pred EEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHHHHhhhhhccccchhhhccc
Confidence 88999975321110 0 0 1113556777888877665421110 1100
Q ss_pred -hccCCCceEEEecCCchhhhhHhhhHHH------HHH-----HHHHHHHHcCC--CCCCeEEEEEeecccCCCHHHHHH
Q 012132 225 -LRIKMPDTYVVHLGNSKELMEVAEDNVA------KRV-----LREHVRESLGV--RNEDLLFAIINSVSRGKGQDLFLH 290 (470)
Q Consensus 225 -~~~~~~~i~vi~ngvd~~~~~~~~~~~~------~~~-----~~~~~r~~~~~--~~~~~~i~~vGrl~~~Kg~~~ll~ 290 (470)
.+...+++.|||||+|.+.|.+...... ... .....++.+|+ ++++++|+++||+.+.||++.+++
T Consensus 513 gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIe 592 (816)
T 3s28_A 513 GIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVE 592 (816)
T ss_dssp SCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBTTEESCBSCTTSCEEEEECCCCTTTTHHHHHH
T ss_pred ccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccccchhhHHHHhcccCCCCCeEEEEEccCcccCCHHHHHH
Confidence 0222348999999999999876542210 000 01123456676 677899999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCceEEEEEeCCCC------cChHHHHHHHHHHHhcCCCCcEEEeccc------CCHHHHHH-hc
Q 012132 291 SFYESLELIKEKKLEVPSVHAVIIGSDMN------AQTKFESELRNYVMQKKIQDRVHFVNKT------LTVAPYLA-AI 357 (470)
Q Consensus 291 a~~~l~~~l~~~~~~~~~~~l~ivG~g~~------~~~~~~~~l~~~~~~~~l~~~V~~~g~~------~~~~~~~~-~a 357 (470)
|++++.+ ..++++|+|+|+|.+ ....+.+.++++++++++.++|.|+|++ +++..+|+ ++
T Consensus 593 A~~~L~~-------~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~aa 665 (816)
T 3s28_A 593 WYGKNTR-------LRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTK 665 (816)
T ss_dssp HHHHCHH-------HHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHh-------hCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHhcC
Confidence 9998865 237899999999852 0112678899999999999999999964 45888888 68
Q ss_pred CEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHH----hCHHHHHHH
Q 012132 358 DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA----THVERRLTM 433 (470)
Q Consensus 358 Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll----~~~~~~~~~ 433 (470)
|++|+||. .|+||++++||||||+|||+|+.||.+|++.++.+|++++++| +++++++|.+++ +|++.++++
T Consensus 666 DvfV~PS~--~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gllv~p~D--~e~LA~aI~~lL~~Ll~d~~~~~~m 741 (816)
T 3s28_A 666 GAFVQPAL--YEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYH--GDQAADTLADFFTKCKEDPSHWDEI 741 (816)
T ss_dssp CEEEECCS--CBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBEEECTTS--HHHHHHHHHHHHHHHHHCTHHHHHH
T ss_pred eEEEECCC--ccCccHHHHHHHHcCCCEEEeCCCChHHHHccCCcEEEeCCCC--HHHHHHHHHHHHHHhccCHHHHHHH
Confidence 99999999 9999999999999999999999999999999999999999998 999999997776 899999999
Q ss_pred HHHHHHHHHHHcChhHHHHHHHHHHHHHH
Q 012132 434 GKRGYERVKEIFQEHHMAERIAVVLKEVL 462 (470)
Q Consensus 434 ~~~a~~~~~~~fs~~~~~~~~~~~~~~~l 462 (470)
++++++++.++|||+.+++++.++|+..-
T Consensus 742 ~~~ar~~a~~~fSwe~~a~~ll~lY~~~g 770 (816)
T 3s28_A 742 SKGGLQRIEEKYTWQIYSQRLLTLTGVYG 770 (816)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999763
No 15
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=100.00 E-value=1.1e-38 Score=310.18 Aligned_cols=342 Identities=12% Similarity=0.104 Sum_probs=227.4
Q ss_pred ccccEEEEEeeccCCC---chhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhh----hh-hcc--eeeEecC-
Q 012132 72 MKSKLVLLVSHELSLS---GGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHK----MW-DRG--VQVISAK- 140 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~---G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~----~~-~~~--~~~~~~~- 140 (470)
..+|||+++++.+.++ ||.+.+.+++++|.++||+|+|++....... .....+... +. ... ..+....
T Consensus 44 ~~~mrI~~v~~~~~p~~~~GG~~~v~~la~~L~~~GheV~Vvt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (413)
T 2x0d_A 44 IKGKRLNLLVPSINQEHMFGGISTALKLFEQFDNKKFKKRIILTDATPNP-KDLQSFKSFKYVMPEEDKDFALQIVPFND 122 (413)
T ss_dssp CCSCEEEEEESCCCGGGCSHHHHHHHHHHTTSCTTTCEEEEEESSCCCCH-HHHGGGTTSEECCTTCCCCCSEEEEECSC
T ss_pred CCCceEEEEeCCCCccccccHHHHHHHHHHHHHHcCCceEEEEecCCCCh-HHHHhhhccceeeccCCccccceeeeccc
Confidence 4568999999998875 7777899999999999999999997543221 111101000 00 000 0111111
Q ss_pred ChhhHHhhcCCcEEEEcccchhhhHHHHhh---hcCCccccceeeEEeeeccccchhh-----hhccccccc--ceeeee
Q 012132 141 GQETINTALKADLIVLNTAVAGKWLDAVLK---EDVPRVLPNVLWWIHEMRGHYFKLD-----YVKHLPLVA--GAMIDS 210 (470)
Q Consensus 141 ~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~h~~~~~~~~~~-----~~~~~~~~~--~~~~~s 210 (470)
.........++|+||++............. ........+.++.+|+..+.+.... ....+...+ .++++|
T Consensus 123 ~~~~~~~~~~~Dvv~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S 202 (413)
T 2x0d_A 123 RYNRTIPVAKHDIFIATAWWTAYAAQRIVSWQSDTYGIPPNKILYIIQDFEPGFYQWSSQYVLAESTYKYRGPQIAVFNS 202 (413)
T ss_dssp CTTCCEEECTTEEEEECSHHHHHHHHHHHHHHHHHHTCCCCCEEEEECSCGGGGSCSSHHHHHHHHTTSCCSCEEEEEES
T ss_pred cccccccCCCCCEEEEehHHHHHHHHHhhhhhhhhcccccCcEEEEEeechhhcCccChHHHHHHHHhccCCceEEEEcC
Confidence 011111235799999987443332222210 0000001345666676544322111 112222223 356677
Q ss_pred hhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeec-ccCCCHHHHH
Q 012132 211 HVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV-SRGKGQDLFL 289 (470)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl-~~~Kg~~~ll 289 (470)
....+.+.+ .|++..++.+++||+|.+.|.+.. .+ ..+...++++||+ .+.||++.++
T Consensus 203 ~~~~~~l~~-----~g~~~~~~~~i~~g~d~~~~~~~~---------------~~-~~~~~~il~~gr~~~~~Kg~~~li 261 (413)
T 2x0d_A 203 ELLKQYFNN-----KGYNFTDEYFFQPKINTTLKNYIN---------------DK-RQKEKIILVYGRPSVKRNAFTLIV 261 (413)
T ss_dssp HHHHHHHHH-----HTCCCSEEEEECCCCCHHHHTTTT---------------SC-CCCCSEEEEEECTTCGGGCHHHHH
T ss_pred HHHHHHHHH-----cCCCCCceEEeCCCcCchhhcccc---------------cc-cCCCCEEEEEecCchhccCHHHHH
Confidence 777666653 355556789999999988664311 11 1345667889996 6889999999
Q ss_pred HHHHHHHHHHHhhcccCC---ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEcc
Q 012132 290 HSFYESLELIKEKKLEVP---SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNS 364 (470)
Q Consensus 290 ~a~~~l~~~l~~~~~~~~---~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS 364 (470)
+|++.+.+ ++| +++|+++|+|... .++++.++|+|+|++ +++.++|+.||+||+||
T Consensus 262 ~A~~~l~~-------~~~~~~~~~l~ivG~~~~~------------~~l~~~~~v~f~G~~~~~~l~~~~~~adv~v~pS 322 (413)
T 2x0d_A 262 EALKIFVQ-------KYDRSNEWKIISVGEKHKD------------IALGKGIHLNSLGKLTLEDYADLLKRSSIGISLM 322 (413)
T ss_dssp HHHHHHHH-------HCTTGGGCEEEEEESCCCC------------EEEETTEEEEEEESCCHHHHHHHHHHCCEEECCC
T ss_pred HHHHHHHH-------hCCCCCceEEEEEcCCchh------------hhcCCcCcEEEcCCCCHHHHHHHHHhCCEEEEec
Confidence 99998865 235 4899999998421 346777899999985 78999999999999999
Q ss_pred CCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 012132 365 QAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEI 444 (470)
Q Consensus 365 ~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 444 (470)
. .|+||++++||||||+|||+++ +|..|++.++.+|++++++| +++|+++|.++++|++++++ ++++.+ +.
T Consensus 323 ~--~E~~g~~~lEAmA~G~PVV~~~-~g~~e~v~~~~~G~lv~~~d--~~~la~ai~~ll~~~~~~~~---~~~~~~-~~ 393 (413)
T 2x0d_A 323 I--SPHPSYPPLEMAHFGLRVITNK-YENKDLSNWHSNIVSLEQLN--PENIAETLVELCMSFNNRDV---DKKESS-NM 393 (413)
T ss_dssp S--SSSCCSHHHHHHHTTCEEEEEC-BTTBCGGGTBTTEEEESSCS--HHHHHHHHHHHHHHTC----------CCB-SC
T ss_pred C--CCCCCcHHHHHHhCCCcEEEeC-CCcchhhhcCCCEEEeCCCC--HHHHHHHHHHHHcCHHHHHH---hHHHHH-Hh
Confidence 9 8999999999999999999954 66789999999999999999 99999999999998887766 566655 46
Q ss_pred cChhHHHHHHHHHHHHHHHh
Q 012132 445 FQEHHMAERIAVVLKEVLKK 464 (470)
Q Consensus 445 fs~~~~~~~~~~~~~~~l~~ 464 (470)
|+|+++.++ .++|++++++
T Consensus 394 ~~W~~~~~~-~~~~~~l~~~ 412 (413)
T 2x0d_A 394 MFYINEFNE-FSFIKEIEEK 412 (413)
T ss_dssp GGGCCCC----TTHHHHHTT
T ss_pred CCHHHHHHH-HHHHHHHHhh
Confidence 999999988 7888887653
No 16
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=100.00 E-value=1.7e-35 Score=302.02 Aligned_cols=334 Identities=12% Similarity=0.085 Sum_probs=243.9
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHH--HHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC-----Chh
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFL--LRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-----GQE 143 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~--L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 143 (470)
..++|||+++++.+..+|.++++.++++. +.+.||+|++++....... .. ...+...+ .+.... ...
T Consensus 202 ~~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~-~~----~~~~~~~~-~~~~~~~~~~~~l~ 275 (568)
T 2vsy_A 202 SKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGS-TL----RTRLAQAS-TLHDVTALGHLATA 275 (568)
T ss_dssp SSSCEEEEEEESCSSSSHHHHHHHHHHHHHHHHCTTEEEEEEESSCCCSC-HH----HHHHHHTS-EEEECTTCCHHHHH
T ss_pred CCCCeEEEEECcccccChHHHHHHHHHhhccCCcccEEEEEEECCCCCcc-HH----HHHHHhcC-eEEECCCCCHHHHH
Confidence 45679999999999888889999999999 8888999999996432111 11 11222222 332221 234
Q ss_pred hHHhhcCCcEEEEcccchh-hhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhh
Q 012132 144 TINTALKADLIVLNTAVAG-KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (470)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (470)
...+..+|||||.++.... ..+....... .++..+.|+..... .... ..+...+.+++.|....
T Consensus 276 ~~i~~~~~Div~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~-~~~~~~d~~i~~s~~~~-------- 340 (568)
T 2vsy_A 276 KHIRHHGIDLLFDLRGWGGGGRPEVFALRP-----APVQVNWLAYPGTS-GAPW-MDYVLGDAFALPPALEP-------- 340 (568)
T ss_dssp HHHHHTTCSEEEECSSCTTCSSCHHHHTCC-----SSEEEEESSSSSCC-CCTT-CCEEEECTTTSCTTTGG--------
T ss_pred HHHHhCCCCEEEECCCCCCcchHHHHhcCC-----CceeEeeecCCccc-CCCC-ceEEEECCCcCCccccc--------
Confidence 5557789999998654321 1111111111 34455555431111 1000 01112344444444332
Q ss_pred hhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhh
Q 012132 223 ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEK 302 (470)
Q Consensus 223 ~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~ 302 (470)
.++ +++.+|||.+......+... +...|+++|++++.+++ ++||+.+ ||++.+++++.++.+
T Consensus 341 -~~~---~~i~~ipn~~~~~~~~~~~~-------~~~~r~~~~~~~~~~v~-~~g~~~~-K~~~~li~a~~~l~~----- 402 (568)
T 2vsy_A 341 -FYS---EHVLRLQGAFQPSDTSRVVA-------EPPSRTQCGLPEQGVVL-CCFNNSY-KLNPQSMARMLAVLR----- 402 (568)
T ss_dssp -GCS---SEEEECSSCSCCCCTTCCCC-------CCCCTGGGTCCTTSCEE-EECCCGG-GCCHHHHHHHHHHHH-----
T ss_pred -CCc---ceeEcCCCcCCCCCCCCCCC-------CCCCccccCCCCCCEEE-EeCCccc-cCCHHHHHHHHHHHH-----
Confidence 222 67999999654332111000 12357788987776555 8999999 999999999998865
Q ss_pred cccCCceEEEEEe-CCCCcChHHHHHHHHHHHhcCCC-CcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHH
Q 012132 303 KLEVPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEA 378 (470)
Q Consensus 303 ~~~~~~~~l~ivG-~g~~~~~~~~~~l~~~~~~~~l~-~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEA 378 (470)
+.|+++|+|+| +| +..+.+++.++++|+. ++|+|+|++ +++..+|+.+|++|+||. . +||++++||
T Consensus 403 --~~~~~~l~i~G~~g-----~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~--~-~~g~~~lEA 472 (568)
T 2vsy_A 403 --EVPDSVLWLLSGPG-----EADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHP--Y-NAHTTASDA 472 (568)
T ss_dssp --HCTTCEEEEECCST-----THHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSS--S-CCSHHHHHH
T ss_pred --hCCCcEEEEecCCH-----HHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeCCC--C-CCcHHHHHH
Confidence 45899999999 66 6889999999999998 999999998 489999999999999999 7 999999999
Q ss_pred HhcCCCEEe-------cCCC-------CcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHH--H
Q 012132 379 MAFQLPVLG-------TAAG-------GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERV--K 442 (470)
Q Consensus 379 ma~G~PvI~-------s~~~-------g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~--~ 442 (470)
|+||+|||+ |+.| |++|++.+ | +++++++|.++++|++.++++++++++.+ .
T Consensus 473 ma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~----------~--~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 540 (568)
T 2vsy_A 473 LWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNVA----------D--DAAFVAKAVALASDPAALTALHARVDVLRRAS 540 (568)
T ss_dssp HHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCS----------S--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHS
T ss_pred HhCCCCEEeccCCCchHHHHHHHHHHCCChhhhcC----------C--HHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcC
Confidence 999999999 9999 99998854 5 99999999999999999999999999998 6
Q ss_pred HHcChhHHHHHHHHHHHHHHHhh
Q 012132 443 EIFQEHHMAERIAVVLKEVLKKS 465 (470)
Q Consensus 443 ~~fs~~~~~~~~~~~~~~~l~~~ 465 (470)
+.|+|+.++++++++|++++...
T Consensus 541 ~~f~~~~~~~~~~~~y~~~~~~~ 563 (568)
T 2vsy_A 541 GVFHMDGFADDFGALLQALARRH 563 (568)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 77999999999999999998754
No 17
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=100.00 E-value=3.3e-34 Score=275.96 Aligned_cols=320 Identities=13% Similarity=0.056 Sum_probs=228.4
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC-------------
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------------- 141 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 141 (470)
|||++++. ..||.+..+..++++|.++||+|++++...... ...+...|+.++....
T Consensus 7 mkIl~~~~--~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 76 (364)
T 1f0k_A 7 KRLMVMAG--GTGGHVFPGLAVAHHLMAQGWQVRWLGTADRME--------ADLVPKHGIEIDFIRISGLRGKGIKALIA 76 (364)
T ss_dssp CEEEEECC--SSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTH--------HHHGGGGTCEEEECCCCCCTTCCHHHHHT
T ss_pred cEEEEEeC--CCccchhHHHHHHHHHHHcCCEEEEEecCCcch--------hhhccccCCceEEecCCccCcCccHHHHH
Confidence 89999983 335668889999999999999999999654321 1112223444432210
Q ss_pred -----------hhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeee
Q 012132 142 -----------QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDS 210 (470)
Q Consensus 142 -----------~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s 210 (470)
...+.+..+||+||++..........+.+. . ..|++.+.|+....... .......+.+++.+
T Consensus 77 ~~~~~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~-~---~~p~v~~~~~~~~~~~~---~~~~~~~d~v~~~~ 149 (364)
T 1f0k_A 77 APLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWS-L---GIPVVLHEQNGIAGLTN---KWLAKIATKVMQAF 149 (364)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCSEEEECSSTTHHHHHHHHHH-T---TCCEEEEECSSSCCHHH---HHHTTTCSEEEESS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEeCCcCchHHHHHHHH-c---CCCEEEEecCCCCcHHH---HHHHHhCCEEEecC
Confidence 123345579999999976533222222211 1 24677777865332211 11223445555443
Q ss_pred hhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCe-EEEEEeecccCCCHHHHH
Q 012132 211 HVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDL-LFAIINSVSRGKGQDLFL 289 (470)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~i~~vGrl~~~Kg~~~ll 289 (470)
... ++ ++.+++||++.+.+.+.. .+++++++++.. ++++.|++.+.||.+.++
T Consensus 150 ~~~-------------~~--~~~~i~n~v~~~~~~~~~-----------~~~~~~~~~~~~~il~~~g~~~~~k~~~~li 203 (364)
T 1f0k_A 150 PGA-------------FP--NAEVVGNPVRTDVLALPL-----------PQQRLAGREGPVRVLVVGGSQGARILNQTMP 203 (364)
T ss_dssp TTS-------------SS--SCEECCCCCCHHHHTSCC-----------HHHHHTTCCSSEEEEEECTTTCCHHHHHHHH
T ss_pred hhh-------------cC--CceEeCCccchhhcccch-----------hhhhcccCCCCcEEEEEcCchHhHHHHHHHH
Confidence 221 12 578999999988764421 134566766665 455567999999999999
Q ss_pred HHHHHHHHHHHhhcccCCceE-EEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcc
Q 012132 290 HSFYESLELIKEKKLEVPSVH-AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWG 368 (470)
Q Consensus 290 ~a~~~l~~~l~~~~~~~~~~~-l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~ 368 (470)
+|++.+. .+++ ++++|+| + .+++++++++++++ +|+|+|+++++.++|+.||++|+||.
T Consensus 204 ~a~~~l~----------~~~~~l~i~G~~-----~-~~~l~~~~~~~~~~-~v~~~g~~~~~~~~~~~ad~~v~~sg--- 263 (364)
T 1f0k_A 204 QVAAKLG----------DSVTIWHQSGKG-----S-QQSVEQAYAEAGQP-QHKVTEFIDDMAAAYAWADVVVCRSG--- 263 (364)
T ss_dssp HHHHHHG----------GGEEEEEECCTT-----C-HHHHHHHHHHTTCT-TSEEESCCSCHHHHHHHCSEEEECCC---
T ss_pred HHHHHhc----------CCcEEEEEcCCc-----h-HHHHHHHHhhcCCC-ceEEecchhhHHHHHHhCCEEEECCc---
Confidence 9998872 1577 5678887 3 47788889888874 79999999999999999999999983
Q ss_pred cccchHHHHHHhcCCCEEecCCCCcc--------eeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012132 369 ECFGRITIEAMAFQLPVLGTAAGGTT--------EIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYER 440 (470)
Q Consensus 369 E~~g~~~lEAma~G~PvI~s~~~g~~--------e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~ 440 (470)
|++++|||++|+|||+++.+|.+ +++.++ .|++++++|.++++++++|.++ |++.++++++++++.
T Consensus 264 ---~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~g-~g~~~~~~d~~~~~la~~i~~l--~~~~~~~~~~~~~~~ 337 (364)
T 1f0k_A 264 ---ALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAG-AAKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAA 337 (364)
T ss_dssp ---HHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTT-SEEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHT
T ss_pred ---hHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhCC-cEEEeccccCCHHHHHHHHHhc--CHHHHHHHHHHHHHh
Confidence 99999999999999999999864 455444 5999998665589999999998 999999999999988
Q ss_pred HHHHcChhHHHHHHHHHHHHHHHh
Q 012132 441 VKEIFQEHHMAERIAVVLKEVLKK 464 (470)
Q Consensus 441 ~~~~fs~~~~~~~~~~~~~~~l~~ 464 (470)
+. .|+|++++++++++|++.-..
T Consensus 338 ~~-~~~~~~~~~~~~~~y~~~~~~ 360 (364)
T 1f0k_A 338 SI-PDATERVANEVSRVARALEHH 360 (364)
T ss_dssp CC-TTHHHHHHHHHHHHHTTC---
T ss_pred hc-cCHHHHHHHHHHHHHHHHHhh
Confidence 75 699999999999999876543
No 18
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=100.00 E-value=5.1e-33 Score=270.69 Aligned_cols=312 Identities=13% Similarity=0.118 Sum_probs=213.6
Q ss_pred cccEEEEEeec-cCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHH--------hhhhhhhhcceeeEecC---
Q 012132 73 KSKLVLLVSHE-LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY--------SLEHKMWDRGVQVISAK--- 140 (470)
Q Consensus 73 ~~~kIl~v~~~-~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~--- 140 (470)
++|||+++++. +++ |.+.....+++.|+++| +|+|++...... ..... .........|+.++...
T Consensus 13 ~~MkIl~is~~~~p~-~~~~~~~~l~~~l~~~G-~V~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~ 89 (406)
T 2hy7_A 13 RRPCYLVLSSHDFRT-PRRANIHFITDQLALRG-TTRFFSLRYSRL-SRMKGDMRLPLDDTANTVVSHNGVDCYLWRTTV 89 (406)
T ss_dssp CCSCEEEEESSCTTS-SSCCHHHHHHHHHHHHS-CEEEEECSCBTT-HHHHTCTTGGGGGGTTSEEEETTEEEEECCBSS
T ss_pred CCceEEEEecccCCC-hhhhhHhHHHHHHHhCC-ceEEEEecccHH-HHhhccchhhhhccCccceecCCeEEEeecccc
Confidence 45899999998 663 33334556788888999 999996432110 00000 00000012344443211
Q ss_pred -------Ch----h------------hHHh--hcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecc-c----
Q 012132 141 -------GQ----E------------TINT--ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG-H---- 190 (470)
Q Consensus 141 -------~~----~------------~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~-~---- 190 (470)
.. . .... ..++|+||.+......+....... ..|++.+.|+... .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~DvIh~~~~~~~~~~~~~~~~-----~~p~v~~~h~~~~~~~~~~ 164 (406)
T 2hy7_A 90 HPFNTRRSWLRPVEDAMFRWYAAHPPKQLLDWMRESDVIVFESGIAVAFIELAKRV-----NPAAKLVYRASDGLSTINV 164 (406)
T ss_dssp CCCCCCCGGGHHHHHHHHHHHHHCCCHHHHHHHHHCSEEEEESSGGGGGHHHHHHH-----CTTSEEEEEESSCHHHHTC
T ss_pred CCccccchhhhccchhHHHHHHHhHHHHHHHHhcCCCEEEECCchHHHHHHHHHHh-----CCCEEEEEeccchhhcccc
Confidence 00 0 0011 127999996544433321211111 2467778886432 1
Q ss_pred --cchhhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCC
Q 012132 191 --YFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRN 268 (470)
Q Consensus 191 --~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 268 (470)
.........+...+.+++.|....+.+.+ ++ ++.+||||+|.+.|.+.... ..+
T Consensus 165 ~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~-----~~----~i~vipngvd~~~f~~~~~~---------------~~~ 220 (406)
T 2hy7_A 165 ASYIEREFDRVAPTLDVIALVSPAMAAEVVS-----RD----NVFHVGHGVDHNLDQLGDPS---------------PYA 220 (406)
T ss_dssp CHHHHHHHHHHGGGCSEEEESCGGGGGGCSC-----ST----TEEECCCCBCTTHHHHHCSC---------------SCC
T ss_pred cHHHHHHHHHHHHhCCEEEEcCHHHHHHHHh-----cC----CEEEEcCCcChHhcCccccc---------------ccC
Confidence 11122344566788889988887655432 22 79999999999988654211 112
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc-
Q 012132 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT- 347 (470)
Q Consensus 269 ~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~- 347 (470)
+.++++++||+.+.||+ ++++ .+ +.++++|+|+|+| + ++++++.++|+|+|++
T Consensus 221 ~~~~i~~vGrl~~~Kg~---~~~l---~~-------~~~~~~l~ivG~g-----~--------~~~~~l~~~V~f~G~~~ 274 (406)
T 2hy7_A 221 EGIHAVAVGSMLFDPEF---FVVA---SK-------AFPQVTFHVIGSG-----M--------GRHPGYGDNVIVYGEMK 274 (406)
T ss_dssp SSEEEEEECCTTBCHHH---HHHH---HH-------HCTTEEEEEESCS-----S--------CCCTTCCTTEEEECCCC
T ss_pred CCcEEEEEeccccccCH---HHHH---HH-------hCCCeEEEEEeCc-----h--------HHhcCCCCCEEEcCCCC
Confidence 33889999999999998 3333 22 2489999999998 3 5667888999999987
Q ss_pred -CCHHHHHHhcCEEEEccCCcccccchHHHHHH-------hcCCCEEecCCCCcceeeecCceeee-ecCCCCChHHHHH
Q 012132 348 -LTVAPYLAAIDVLVQNSQAWGECFGRITIEAM-------AFQLPVLGTAAGGTTEIVVNGTTGLL-HPVGKEGITPLAK 418 (470)
Q Consensus 348 -~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAm-------a~G~PvI~s~~~g~~e~v~~~~~G~l-~~~~d~~~~~la~ 418 (470)
+++.++|++||++|+||. .|+||++++||| |||+|||+|+. +.++.+|++ ++++| +++|++
T Consensus 275 ~~~l~~~~~~adv~v~ps~--~E~~~~~~lEAm~Kl~eYla~G~PVIas~~------v~~~~~G~l~v~~~d--~~~la~ 344 (406)
T 2hy7_A 275 HAQTIGYIKHARFGIAPYA--SEQVPVYLADSSMKLLQYDFFGLPAVCPNA------VVGPYKSRFGYTPGN--ADSVIA 344 (406)
T ss_dssp HHHHHHHHHTCSEEECCBS--CSCCCTTHHHHCHHHHHHHHHTCCEEEEGG------GTCSCSSEEEECTTC--HHHHHH
T ss_pred HHHHHHHHHhcCEEEECCC--cccCchHHHHHHHHHHHHhhCCCcEEEehh------cccCcceEEEeCCCC--HHHHHH
Confidence 689999999999999999 999999999999 99999999987 567889999 99998 999999
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH--HHHHH
Q 012132 419 NIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVV--LKEVL 462 (470)
Q Consensus 419 ~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~--~~~~l 462 (470)
+|.++++|++ + ...+.|+|+.++++++++ |+++.
T Consensus 345 ai~~ll~~~~---------~-~~~~~~sw~~~a~~~~~~~~y~~~~ 380 (406)
T 2hy7_A 345 AITQALEAPR---------V-RYRQCLNWSDTTDRVLDPRAYPETR 380 (406)
T ss_dssp HHHHHHHCCC---------C-CCSCCCBHHHHHHHHHCGGGSGGGB
T ss_pred HHHHHHhCcc---------h-hhhhcCCHHHHHHHHHHhhcccccC
Confidence 9999999876 1 223669999999999999 87654
No 19
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=100.00 E-value=3.5e-32 Score=263.83 Aligned_cols=347 Identities=11% Similarity=0.037 Sum_probs=230.1
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCc-eEEEEecCCCCCchhHHHhhhhhhhhcceee-Ee--c-----------
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGT-KVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-IS--A----------- 139 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~-~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~----------- 139 (470)
|||++++... ........++++|+++|+ ++.++......... .......++.. +. .
T Consensus 1 mkIl~v~~~~---~~~~~~~~l~~~L~~~g~~~~~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (384)
T 1vgv_A 1 MKVLTVFGTR---PEAIKMAPLVHALAKDPFFEAKVCVTAQHREML------DQVLKLFSIVPDYDLNIMQPGQGLTEIT 71 (384)
T ss_dssp CEEEEEECSH---HHHHHHHHHHHHHHHSTTCEEEEEECCSSGGGG------HHHHHHHTCCCSEECCCCSTTSCHHHHH
T ss_pred CeEEEEeccc---HHHHHHHHHHHHHHhCCCCceEEEEcCCCHHHH------HHHHHHcCCCCCcceecCCCCccHHHHH
Confidence 7899987543 112456789999999994 88776543221111 01111122211 11 1
Q ss_pred ----CChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc----c-hhhhhcc-cccccceeee
Q 012132 140 ----KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY----F-KLDYVKH-LPLVAGAMID 209 (470)
Q Consensus 140 ----~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~----~-~~~~~~~-~~~~~~~~~~ 209 (470)
.....+.+..+||+||+|......+........ ...|++++.|+..... + ....... ....+.+++.
T Consensus 72 ~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~---~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 148 (384)
T 1vgv_A 72 CRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFY---QRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSP 148 (384)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHT---TTCCEEEESCCCCCSCTTSSTTHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHH---HCCCEEEEecccccccccCCCchHhhHHHHHhhccEEEcC
Confidence 112344566899999998752222222222211 1246777777653110 1 1111111 2346777777
Q ss_pred ehhhHHHHHHhhhhhhccCCCceEEEecCC-chhhhhHhhhHHHHHHHHHHHHHHcC-CCC-CCeEEEEEeecccC-CCH
Q 012132 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLG-VRN-EDLLFAIINSVSRG-KGQ 285 (470)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~-~~~-~~~~i~~vGrl~~~-Kg~ 285 (470)
+....+.+. .+|++.+++.+++||+ |...+.+.... .....+.++++++| +++ ++++++++||+.+. ||+
T Consensus 149 s~~~~~~l~-----~~g~~~~~i~vi~n~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vl~~~gr~~~~~kg~ 222 (384)
T 1vgv_A 149 TETSRQNLL-----RENVADSRIFITGNTVIDALLWVRDQVM-SSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGF 222 (384)
T ss_dssp SHHHHHHHH-----HTTCCGGGEEECCCHHHHHHHHHHHHTT-TCHHHHHHHHTTCTTCCTTSEEEEEECCCBSSCCHHH
T ss_pred cHHHHHHHH-----HcCCChhhEEEeCChHHHHHHhhhhccc-cchhhhHHHHHhccccCCCCCEEEEEeCCccccchHH
Confidence 777665553 4577778899999995 33322221000 00001245788888 754 45778899999876 999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCceEEEEE-eCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEE
Q 012132 286 DLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQ 362 (470)
Q Consensus 286 ~~ll~a~~~l~~~l~~~~~~~~~~~l~iv-G~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~ 362 (470)
+.+++|+.++.+ +.|+++++++ |++. .+.+.+++++.. .++|+|+|+. +++.++|+.||++|+
T Consensus 223 ~~li~a~~~l~~-------~~~~~~l~i~~g~~~----~~~~~l~~~~~~---~~~v~~~g~~~~~~~~~~~~~ad~~v~ 288 (384)
T 1vgv_A 223 EEICHALADIAT-------THQDIQIVYPVHLNP----NVREPVNRILGH---VKNVILIDPQEYLPFVWLMNHAWLILT 288 (384)
T ss_dssp HHHHHHHHHHHH-------HCTTEEEEEECCBCH----HHHHHHHHHHTT---CTTEEEECCCCHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHh-------hCCCeEEEEEcCCCH----HHHHHHHHHhhc---CCCEEEeCCCCHHHHHHHHHhCcEEEE
Confidence 999999998865 3478999886 4331 255666665432 3689997653 789999999999999
Q ss_pred ccCCcccccchHHHHHHhcCCCEEecCC-CCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 012132 363 NSQAWGECFGRITIEAMAFQLPVLGTAA-GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERV 441 (470)
Q Consensus 363 pS~~~~E~~g~~~lEAma~G~PvI~s~~-~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 441 (470)
|| |.+++|||++|+|||+++. |+..|++.++ +|+++++ | +++|+++|.++++|++.+++|+++++++.
T Consensus 289 ~S-------g~~~lEA~a~G~PvI~~~~~~~~~e~v~~g-~g~lv~~-d--~~~la~~i~~ll~d~~~~~~~~~~~~~~~ 357 (384)
T 1vgv_A 289 DS-------GGIQEEAPSLGKPVLVMRDTTERPEAVTAG-TVRLVGT-D--KQRIVEEVTRLLKDENEYQAMSRAHNPYG 357 (384)
T ss_dssp SS-------STGGGTGGGGTCCEEEESSCCSCHHHHHHT-SEEEECS-S--HHHHHHHHHHHHHCHHHHHHHHSSCCTTC
T ss_pred CC-------cchHHHHHHcCCCEEEccCCCCcchhhhCC-ceEEeCC-C--HHHHHHHHHHHHhChHHHhhhhhccCCCc
Confidence 98 3448999999999999986 8999999887 9999987 6 99999999999999999999999998775
Q ss_pred HHHcChhHHHHHHHHHHHHHHHhh
Q 012132 442 KEIFQEHHMAERIAVVLKEVLKKS 465 (470)
Q Consensus 442 ~~~fs~~~~~~~~~~~~~~~l~~~ 465 (470)
+.|+|+++++.+.++|+++....
T Consensus 358 -~~~~~~~i~~~~~~~~~~~~~~~ 380 (384)
T 1vgv_A 358 -DGQACSRILEALKNNRISLGSHH 380 (384)
T ss_dssp -CSCHHHHHHHHHHHTCCCC----
T ss_pred -CCCHHHHHHHHHHHHHHhhcccc
Confidence 56999999999999988876543
No 20
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.98 E-value=2.5e-32 Score=263.92 Aligned_cols=339 Identities=12% Similarity=0.072 Sum_probs=222.3
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhC-C-ceEEEEecCCCCCchhHHHhhhhhhhhcceee------Eec-C-
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGV-G-TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV------ISA-K- 140 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~-G-~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~- 140 (470)
++++|||++++...+.. .....++++|.++ | |+|.+++...+.... .......++.. ... .
T Consensus 5 m~~~mkIl~v~~~~~~~---~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 75 (375)
T 3beo_A 5 MTERLKVMTIFGTRPEA---IKMAPLVLELQKHPEKIESIVTVTAQHRQML------DQVLSIFGITPDFDLNIMKDRQT 75 (375)
T ss_dssp CSSCEEEEEEECSHHHH---HHHHHHHHHHTTCTTTEEEEEEECCSSSHHH------HHHHHHHTCCCSEECCCCCTTCC
T ss_pred CCcCceEEEEecCcHHH---HHHHHHHHHHHhCCCCCCeEEEEcCCCHHHH------HHHHHHcCCCCccccccCCCccc
Confidence 34568999998654322 2456788888886 4 888777644332111 11111112211 100 0
Q ss_pred ----------ChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc----chh-hhhccc-cccc
Q 012132 141 ----------GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY----FKL-DYVKHL-PLVA 204 (470)
Q Consensus 141 ----------~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~----~~~-~~~~~~-~~~~ 204 (470)
....+.+..+||+||+|+.....+......... ..|++++.|+..... +.. ...+.+ ...+
T Consensus 76 ~~~~~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~---~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 152 (375)
T 3beo_A 76 LIDITTRGLEGLDKVMKEAKPDIVLVHGDTTTTFIASLAAFYN---QIPVGHVEAGLRTWDKYSPYPEEMNRQLTGVMAD 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHHT---TCCEEEESCCCCCSCTTSSTTHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHH---CCCEEEEecccccccccCCChhHhhhhHHhhhhh
Confidence 123445668999999987532222221111111 245666556542110 001 111112 2356
Q ss_pred ceeeeehhhHHHHHHhhhhhhccCCCceEEEecC-CchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccC-
Q 012132 205 GAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLG-NSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRG- 282 (470)
Q Consensus 205 ~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ng-vd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~- 282 (470)
.+++.|....+.+. .+|++.+++.+++|| +|...+.+.... +..+++++ ++++++++++||+.+.
T Consensus 153 ~ii~~s~~~~~~~~-----~~g~~~~~i~vi~n~~~d~~~~~~~~~~------~~~~~~~~--~~~~~vl~~~gr~~~~~ 219 (375)
T 3beo_A 153 LHFSPTAKSATNLQ-----KENKDESRIFITGNTAIDALKTTVKETY------SHPVLEKL--GNNRLVLMTAHRRENLG 219 (375)
T ss_dssp EEEESSHHHHHHHH-----HTTCCGGGEEECCCHHHHHHHHHCCSSC------CCHHHHTT--TTSEEEEEECCCGGGTT
T ss_pred eeeCCCHHHHHHHH-----HcCCCcccEEEECChhHhhhhhhhhhhh------hHHHHHhc--cCCCeEEEEecccccch
Confidence 77777777665554 357777889999999 787665432100 12344444 3566778899999875
Q ss_pred CCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEE
Q 012132 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVL 360 (470)
Q Consensus 283 Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~ 360 (470)
||++.+++|++++.+ ++|++++++ |.|+. ....+.+++++ +..++|+|+|+. .++..+|+.||++
T Consensus 220 K~~~~li~a~~~l~~-------~~~~~~~i~-~~g~~--~~~~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~ad~~ 286 (375)
T 3beo_A 220 EPMRNMFRAIKRLVD-------KHEDVQVVY-PVHMN--PVVRETANDIL---GDYGRIHLIEPLDVIDFHNVAARSYLM 286 (375)
T ss_dssp HHHHHHHHHHHHHHH-------HCTTEEEEE-ECCSC--HHHHHHHHHHH---TTCTTEEEECCCCHHHHHHHHHTCSEE
T ss_pred hHHHHHHHHHHHHHh-------hCCCeEEEE-eCCCC--HHHHHHHHHHh---hccCCEEEeCCCCHHHHHHHHHhCcEE
Confidence 999999999998855 347888655 65531 12334444332 333689997764 4899999999999
Q ss_pred EEccCCcccccchHHHHHHhcCCCEEecCC-CCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 012132 361 VQNSQAWGECFGRITIEAMAFQLPVLGTAA-GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYE 439 (470)
Q Consensus 361 v~pS~~~~E~~g~~~lEAma~G~PvI~s~~-~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~ 439 (470)
|+|| |.+++|||+||+|||+++. |+.+|++.++ +|+++++ | +++|+++|.++++|++.+++|++++++
T Consensus 287 v~~s-------g~~~lEA~a~G~Pvi~~~~~~~~~e~v~~g-~g~~v~~-d--~~~la~~i~~ll~~~~~~~~~~~~~~~ 355 (375)
T 3beo_A 287 LTDS-------GGVQEEAPSLGVPVLVLRDTTERPEGIEAG-TLKLAGT-D--EETIFSLADELLSDKEAHDKMSKASNP 355 (375)
T ss_dssp EECC-------HHHHHHHHHHTCCEEECSSCCSCHHHHHTT-SEEECCS-C--HHHHHHHHHHHHHCHHHHHHHCCCCCT
T ss_pred EECC-------CChHHHHHhcCCCEEEecCCCCCceeecCC-ceEEcCC-C--HHHHHHHHHHHHhChHhHhhhhhcCCC
Confidence 9988 5669999999999999964 8999998877 9999986 6 999999999999999999999999988
Q ss_pred HHHHHcChhHHHHHHHHHHH
Q 012132 440 RVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 440 ~~~~~fs~~~~~~~~~~~~~ 459 (470)
+. +.|+|+++++.+.++++
T Consensus 356 ~~-~~~~~~~i~~~~~~~~~ 374 (375)
T 3beo_A 356 YG-DGRASERIVEAILKHFN 374 (375)
T ss_dssp TC-CSCHHHHHHHHHHHHTT
T ss_pred CC-CCcHHHHHHHHHHHHhh
Confidence 76 56999999999887764
No 21
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.98 E-value=1.2e-30 Score=256.60 Aligned_cols=218 Identities=11% Similarity=0.064 Sum_probs=171.6
Q ss_pred CCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCc
Q 012132 229 MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 308 (470)
Q Consensus 229 ~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~ 308 (470)
..++.+||||||.+.|.+......... .+++|++++ ++.+|+++||+.+.||++.+++|++++.+..++. ..+
T Consensus 218 ~~~v~vip~GID~~~f~~~~~~~~~~~-~~~lr~~~~---~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~---~~~ 290 (482)
T 1uqt_A 218 AFRTEVYPIGIEPKEIAKQAAGPLPPK-LAQLKAELK---NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQH---HGK 290 (482)
T ss_dssp EEEEEECCCCCCHHHHHHHHHSCCCHH-HHHHHHHTT---TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGG---TTT
T ss_pred EEEEEEEeccCCHHHHHHHhcCcchHH-HHHHHHHhC---CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccc---cCc
Confidence 457899999999999876432111111 356788886 6788999999999999999999999987633221 125
Q ss_pred eEEEEEeCCCCcChH----HHHHHHHHHHhcC----CC--CcEEE-ecc--cCCHHHHHHhcCEEEEccCCcccccchHH
Q 012132 309 VHAVIIGSDMNAQTK----FESELRNYVMQKK----IQ--DRVHF-VNK--TLTVAPYLAAIDVLVQNSQAWGECFGRIT 375 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~----~~~~l~~~~~~~~----l~--~~V~~-~g~--~~~~~~~~~~aDv~v~pS~~~~E~~g~~~ 375 (470)
++|+++|.+...+.+ +.+++++++.+++ .. ..|+| .|. .+++..+|+.||+||+||. .||||+++
T Consensus 291 v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~v~pS~--~EGfgLv~ 368 (482)
T 1uqt_A 291 IRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPL--RDGMNLVA 368 (482)
T ss_dssp EEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEECCS--SBSCCHHH
T ss_pred EEEEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHccEEEECCC--cccCCchH
Confidence 889999974322223 3455566655432 21 13665 464 3889999999999999999 99999999
Q ss_pred HHHHhcCC-----CEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHcChhH
Q 012132 376 IEAMAFQL-----PVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH-VERRLTMGKRGYERVKEIFQEHH 449 (470)
Q Consensus 376 lEAma~G~-----PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~-~~~~~~~~~~a~~~~~~~fs~~~ 449 (470)
+||||||+ |+|+|+.+|..+.+ + +|+++++.| +++++++|.+++++ ++.++++++++++++.+ |||+.
T Consensus 369 lEAmA~g~~~~~gpvV~S~~~G~~~~l-~--~g~lv~p~d--~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~-~s~~~ 442 (482)
T 1uqt_A 369 KEYVAAQDPANPGVLVLSQFAGAANEL-T--SALIVNPYD--RDEVAAALDRALTMSLAERISRHAEMLDVIVK-NDINH 442 (482)
T ss_dssp HHHHHHSCTTSCCEEEEETTBGGGGTC-T--TSEEECTTC--HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH-TCHHH
T ss_pred HHHHHhCCCCCCCCEEEECCCCCHHHh-C--CeEEECCCC--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-CCHHH
Confidence 99999997 89999988887777 2 789999999 99999999999984 67889999999999866 99999
Q ss_pred HHHHHHHHHHHH
Q 012132 450 MAERIAVVLKEV 461 (470)
Q Consensus 450 ~~~~~~~~~~~~ 461 (470)
+++++++.|+++
T Consensus 443 ~a~~~l~~l~~~ 454 (482)
T 1uqt_A 443 WQECFISDLKQI 454 (482)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhc
Confidence 999999999876
No 22
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.97 E-value=5.4e-31 Score=259.46 Aligned_cols=305 Identities=14% Similarity=0.111 Sum_probs=209.9
Q ss_pred cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeec--------ccc--chh--------------------hhhc
Q 012132 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR--------GHY--FKL--------------------DYVK 198 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--------~~~--~~~--------------------~~~~ 198 (470)
.+|||+|+|....+.....+... .+ .++.++++|... +.. +.. ..+.
T Consensus 180 ~~pdIiH~HDW~tg~~~~~Lk~~-~~--~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~~~i~~~~~~EKa 256 (725)
T 3nb0_A 180 QHAIVAHFHEWLAGVALPLCRKR-RI--DVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERA 256 (725)
T ss_dssp SEEEEEEEESGGGCTHHHHHHHT-TC--SCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcEEEeCchhhhHHHHHHHHh-CC--CCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhhhchhHHHHHHHH
Confidence 55999999997776654443322 22 368999999862 211 000 0111
Q ss_pred ccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhH-HHHHHHHHHH----HHH----cCCC-C
Q 012132 199 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDN-VAKRVLREHV----RES----LGVR-N 268 (470)
Q Consensus 199 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~-~~~~~~~~~~----r~~----~~~~-~ 268 (470)
....++.++++|..++..... -++.+...+ ||||+|.+.|.+.... ..+...|.++ |.. ++++ +
T Consensus 257 ga~~AD~ITTVS~~yA~Ei~~----Ll~r~~d~i--IpNGID~~~f~p~~~~~~~k~~aK~klq~~l~~~~~~~l~l~~d 330 (725)
T 3nb0_A 257 AAHSADVFTTVSQITAFEAEH----LLKRKPDGI--LPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFDFDLD 330 (725)
T ss_dssp HHHHSSEEEESSHHHHHHHHH----HTSSCCSEE--CCCCBCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTTCCCSCGG
T ss_pred HHHhCCEEEECCHHHHHHHHH----HhcCCCCEE--EcCCccccccCcchhhHHHHHHHHHHHHHHHHhhcccCCCCCCC
Confidence 223667888888888776554 445555533 9999999998774211 1111223333 332 2454 3
Q ss_pred CCeEEEEEeecc-cCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcCh-------------------------
Q 012132 269 EDLLFAIINSVS-RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT------------------------- 322 (470)
Q Consensus 269 ~~~~i~~vGrl~-~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~------------------------- 322 (470)
+.++++.+||++ ..||+|++++|+.++...++..+.+..-+.|+|+..+.....
T Consensus 331 k~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~ 410 (725)
T 3nb0_A 331 NTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIG 410 (725)
T ss_dssp GEEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcchhHHHHHHHHHHHHHHHHh
Confidence 456677789999 689999999999999887766554556678888877632200
Q ss_pred -----------------------------------------------------------HHHHHHHHHHHhcCCCCc---
Q 012132 323 -----------------------------------------------------------KFESELRNYVMQKKIQDR--- 340 (470)
Q Consensus 323 -----------------------------------------------------------~~~~~l~~~~~~~~l~~~--- 340 (470)
...+.+...++++++.++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~D~Il~~~r~l~L~N~~~d 490 (725)
T 3nb0_A 411 KRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSD 490 (725)
T ss_dssp HHHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGGCHHHHHHHHHTCCCCTTC
T ss_pred HHHHHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCccHHHHHHHhcCCCCCcCC
Confidence 011223334455666555
Q ss_pred ---EEEec-cc--------CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecC-------c
Q 012132 341 ---VHFVN-KT--------LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNG-------T 401 (470)
Q Consensus 341 ---V~~~g-~~--------~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~-------~ 401 (470)
|.|++ +. .++.++|+.||++|+||. +|+||++++||||||+|||+|+.||.+|++.++ .
T Consensus 491 rVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~--~EgfGl~~LEAmA~G~PvI~s~~gG~~d~V~dg~~~~~~~~ 568 (725)
T 3nb0_A 491 RVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSY--YEPWGYTPAECTVMGVPSITTNVSGFGSYMEDLIETNQAKD 568 (725)
T ss_dssp SEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCS--SBSSCHHHHHHHHTTCCEEEETTBHHHHHHHTTSCHHHHHH
T ss_pred ceeEEEeccccCCCCccchhHHHHHHhhceEEEeccc--cCCCCHHHHHHHHcCCCEEEeCCCChhhhhhccccccCCCC
Confidence 56664 32 368999999999999999 999999999999999999999999999998775 3
Q ss_pred eeeeecCCC-CChHHHHHHHHHHH----h-CHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHhh
Q 012132 402 TGLLHPVGK-EGITPLAKNIVKLA----T-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 465 (470)
Q Consensus 402 ~G~l~~~~d-~~~~~la~~i~~ll----~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~~ 465 (470)
+|+++.+.+ .++++++++|.+++ + ++..+..+++++++.+ +.|||++++++|+++|++++.+.
T Consensus 569 tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A-~~FSWe~iA~~Yl~~Ye~aL~~~ 637 (725)
T 3nb0_A 569 YGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALS-DLLDWKRMGLEYVKARQLALRRG 637 (725)
T ss_dssp TTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGG-GGGBHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhhc
Confidence 698885421 12666555555554 3 6778889999888766 56999999999999999998653
No 23
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.97 E-value=5.6e-31 Score=231.13 Aligned_cols=190 Identities=21% Similarity=0.280 Sum_probs=164.5
Q ss_pred EecCCchhhhh--HhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecc-cCCCHHHHHHHHHHHH--HHHHhhcccCCce
Q 012132 235 VHLGNSKELME--VAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS-RGKGQDLFLHSFYESL--ELIKEKKLEVPSV 309 (470)
Q Consensus 235 i~ngvd~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~-~~Kg~~~ll~a~~~l~--~~l~~~~~~~~~~ 309 (470)
||||+|.+.|. +... .....+..+|+++|++++ .+|+++|++. +.||++.+++++..+. + +.+++
T Consensus 2 ipngvd~~~f~~~~~~~--~~~~~~~~~r~~~~~~~~-~~i~~~G~~~~~~K~~~~li~a~~~l~~~~-------~~~~~ 71 (200)
T 2bfw_A 2 SHNGIDCSFWNESYLTG--SRDERKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKK-------EFQEM 71 (200)
T ss_dssp ---CCCTTTSSGGGSCS--CHHHHHHHHHHHTTCCSC-EEEEEESCBCSSSSCHHHHHHHHHHHTTSG-------GGGGE
T ss_pred CCCccChhhcccccccc--chhhHHHHHHHHcCCCCC-CEEEEeeccccccCCHHHHHHHHHHHHhhc-------cCCCe
Confidence 79999999997 6531 011224678999999754 5889999999 9999999999999874 3 34799
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEE-ecccC--CHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEE
Q 012132 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHF-VNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (470)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~-~g~~~--~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (470)
+|+|+|.+.+ .+.+.+++++++++ +|+| +|+++ ++..+|+.||++|+||. .|+||++++|||++|+|||
T Consensus 72 ~l~i~G~~~~---~~~~~l~~~~~~~~---~v~~~~g~~~~~~~~~~~~~ad~~l~ps~--~e~~~~~~~Ea~a~G~PvI 143 (200)
T 2bfw_A 72 RFIIIGKGDP---ELEGWARSLEEKHG---NVKVITEMLSREFVRELYGSVDFVIIPSY--FEPFGLVALEAMCLGAIPI 143 (200)
T ss_dssp EEEEECCBCH---HHHHHHHHHHHHCT---TEEEECSCCCHHHHHHHHTTCSEEEECCS--CCSSCHHHHHHHHTTCEEE
T ss_pred EEEEECCCCh---HHHHHHHHHHHhcC---CEEEEeccCCHHHHHHHHHHCCEEEECCC--CCCccHHHHHHHHCCCCEE
Confidence 9999999821 27888999999886 8999 99975 99999999999999999 8999999999999999999
Q ss_pred ecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHcC
Q 012132 387 GTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQ 446 (470)
Q Consensus 387 ~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs 446 (470)
+++.++..|++ ++.+|++++++| +++++++|.++++ |++.++++++++++++.+ ||
T Consensus 144 ~~~~~~~~e~~-~~~~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~-fs 200 (200)
T 2bfw_A 144 ASAVGGLRDII-TNETGILVKAGD--PGELANAILKALELSRSDLSKFRENCKKRAMS-FS 200 (200)
T ss_dssp EESCHHHHHHC-CTTTCEEECTTC--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-TC
T ss_pred EeCCCChHHHc-CCCceEEecCCC--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-cC
Confidence 99999999999 899999999988 9999999999999 999999999999999988 86
No 24
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.96 E-value=5.1e-29 Score=239.48 Aligned_cols=309 Identities=8% Similarity=0.051 Sum_probs=211.9
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhccee--e-EecC---ChhhHHhh
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ--V-ISAK---GQETINTA 148 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~---~~~~~~~~ 148 (470)
.+|++.+.+. |..+.+..|+++|.++| +|.+.+..... ..... ... .++. . ++.. ....+.+.
T Consensus 41 ~~iwih~~s~---G~~~~~~~L~~~L~~~~-~v~v~~~~~~~--~~~~~----~~~-~~v~~~~~~p~~~~~~l~~~l~~ 109 (374)
T 2xci_A 41 GALWVHTASI---GEFNTFLPILKELKREH-RILLTYFSPRA--REYLK----TKS-DFYDCLHPLPLDNPFSVKRFEEL 109 (374)
T ss_dssp TCEEEECSSH---HHHHHHHHHHHHHHHHS-CEEEEESCGGG--HHHHH----TTG-GGCSEEEECCCSSHHHHHHHHHH
T ss_pred CCEEEEcCCH---HHHHHHHHHHHHHHhcC-CEEEEEcCCcH--HHHHH----Hhc-ccccceeECCCCCHHHHHHHHHH
Confidence 4576665333 66789999999999998 88766543211 11111 111 2332 2 2221 23456677
Q ss_pred cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhhccC
Q 012132 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIK 228 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 228 (470)
.+||+||++.... |...+.. ... |++...+..... ..+...+...+.+++.|....+.+. .+|++
T Consensus 110 ~~pDiv~~~~~~~--~~~~~~~--~~~---p~~~~~~~~~~~---~~~~~~~~~~d~ii~~S~~~~~~l~-----~~g~~ 174 (374)
T 2xci_A 110 SKPKALIVVEREF--WPSLIIF--TKV---PKILVNAYAKGS---LIEKILSKKFDLIIMRTQEDVEKFK-----TFGAK 174 (374)
T ss_dssp HCCSEEEEESCCC--CHHHHHH--CCS---CEEEEEECCCCC---HHHHHHHTTCSEEEESCHHHHHHHH-----TTTCC
T ss_pred hCCCEEEEECccC--cHHHHHH--HhC---CEEEEEeecCch---HHHHHHHHhCCEEEECCHHHHHHHH-----HcCCC
Confidence 8999999754221 1111111 111 333333322111 1233445677888888888876654 34665
Q ss_pred CCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCc
Q 012132 229 MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 308 (470)
Q Consensus 229 ~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~ 308 (470)
++.+++|+. |.+.... ++. + ..+++++.|+ ..||++.+++|++++.+ ++|+
T Consensus 175 --ki~vi~n~~----f~~~~~~----------~~~--l--~~~vi~~~~~--~~k~~~~ll~A~~~l~~-------~~p~ 225 (374)
T 2xci_A 175 --RVFSCGNLK----FICQKGK----------GIK--L--KGEFIVAGSI--HTGEVEIILKAFKEIKK-------TYSS 225 (374)
T ss_dssp --SEEECCCGG----GCCCCCS----------CCC--C--SSCEEEEEEE--CGGGHHHHHHHHHHHHT-------TCTT
T ss_pred --eEEEcCCCc----cCCCcCh----------hhh--h--cCCEEEEEeC--CCchHHHHHHHHHHHHh-------hCCC
Confidence 899999973 2111100 000 1 1245655554 46899999999998854 5689
Q ss_pred eEEEEEeCCCCcChHHH-HHHHHHHHhcCCC--------CcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHH
Q 012132 309 VHAVIIGSDMNAQTKFE-SELRNYVMQKKIQ--------DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM 379 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~-~~l~~~~~~~~l~--------~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAm 379 (470)
++|+|+|+| +.+ ++++++++++|+. ++|.+.|..+++..+|+.||++++||.. .|++|++++|||
T Consensus 226 ~~lvivG~g-----~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~~aDv~vl~ss~-~e~gg~~~lEAm 299 (374)
T 2xci_A 226 LKLILVPRH-----IENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTF-VNIGGHNLLEPT 299 (374)
T ss_dssp CEEEEEESS-----GGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGGGEEEEEECSSS-SSSCCCCCHHHH
T ss_pred cEEEEECCC-----HHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHHhCCEEEECCcc-cCCCCcCHHHHH
Confidence 999999988 444 6889999999886 5788989889999999999998888651 578899999999
Q ss_pred hcCCCEEec-CCCCcceeeecC-ceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCh
Q 012132 380 AFQLPVLGT-AAGGTTEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQE 447 (470)
Q Consensus 380 a~G~PvI~s-~~~g~~e~v~~~-~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~ 447 (470)
|||+|||++ +.++.+|++.+. .+|++++++| +++|+++|.++++| +.+++|+++++++++++++.
T Consensus 300 A~G~PVI~~~~~~~~~e~~~~~~~~G~l~~~~d--~~~La~ai~~ll~d-~~r~~mg~~ar~~~~~~~ga 366 (374)
T 2xci_A 300 CWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKN--ETELVTKLTELLSV-KKEIKVEEKSREIKGCYLEK 366 (374)
T ss_dssp TTTCCEEECSCCTTSHHHHHHHHHTTCEEECCS--HHHHHHHHHHHHHS-CCCCCHHHHHHHHHHHHHHH
T ss_pred HhCCCEEECCCccChHHHHHHHHHCCCEEEeCC--HHHHHHHHHHHHhH-HHHHHHHHHHHHHHHhcccH
Confidence 999999975 789999988653 5789999988 99999999999999 99999999999999876554
No 25
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.96 E-value=5e-29 Score=211.76 Aligned_cols=161 Identities=13% Similarity=0.141 Sum_probs=139.5
Q ss_pred CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--
Q 012132 270 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-- 347 (470)
Q Consensus 270 ~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~-- 347 (470)
+++|+++||+.+.||++.+++|+..+. +.++++|+|+|+| +..+.++++++++++ +|.| |+.
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~--------~~~~~~l~i~G~g-----~~~~~~~~~~~~~~~--~v~~-g~~~~ 65 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSK--------YKQDIVLLLKGKG-----PDEKKIKLLAQKLGV--KAEF-GFVNS 65 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCT--------TGGGEEEEEECCS-----TTHHHHHHHHHHHTC--EEEC-CCCCH
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhc--------cCCCeEEEEEeCC-----ccHHHHHHHHHHcCC--eEEE-eecCH
Confidence 578999999999999999999998762 2379999999998 567899999999987 8999 985
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCC-CEEe-cCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL-PVLG-TAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~-PvI~-s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
+++.++|+.||++|+||. .|+||++++|||++|+ |||+ ++.|+..+++.++ +.+++++| +++++++|.++++
T Consensus 66 ~~~~~~~~~adv~v~ps~--~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~--~~~~~~~~--~~~l~~~i~~l~~ 139 (166)
T 3qhp_A 66 NELLEILKTCTLYVHAAN--VESEAIACLEAISVGIVPVIANSPLSATRQFALDE--RSLFEPNN--AKDLSAKIDWWLE 139 (166)
T ss_dssp HHHHHHHTTCSEEEECCC--SCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSG--GGEECTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEECCc--ccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCC--ceEEcCCC--HHHHHHHHHHHHh
Confidence 789999999999999999 9999999999999998 9999 5688999999765 44888888 9999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHcChhHHHHH
Q 012132 426 HVERRLTMGKRGYERVKEIFQEHHMAER 453 (470)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~fs~~~~~~~ 453 (470)
|++.++++++++++++ ++|+|++++++
T Consensus 140 ~~~~~~~~~~~~~~~~-~~~s~~~~~~~ 166 (166)
T 3qhp_A 140 NKLERERMQNEYAKSA-LNYTLENSVIQ 166 (166)
T ss_dssp CHHHHHHHHHHHHHHH-HHHC-------
T ss_pred CHHHHHHHHHHHHHHH-HHCChhhhhcC
Confidence 9999999999999988 77999998764
No 26
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.96 E-value=1.3e-27 Score=232.02 Aligned_cols=287 Identities=12% Similarity=0.052 Sum_probs=210.4
Q ss_pred CCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc---------chhhhhcccccccceeeeehhhHHHHHHh
Q 012132 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---------FKLDYVKHLPLVAGAMIDSHVTAEYWKNR 220 (470)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~---------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 220 (470)
.-|+|.+|+....... ..++...+. .++.+.+|...+.. +.....+.+-.++.+...+......+.+.
T Consensus 149 ~~D~VwVhDYhL~llp-~~lR~~~~~--~~igfFlHiPfPs~e~f~~Lp~~~r~ell~gll~~DligF~t~~y~~~Fl~~ 225 (496)
T 3t5t_A 149 ADPVYLVHDYQLVGVP-ALLREQRPD--APILLFVHIPWPSADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFLES 225 (496)
T ss_dssp SSCEEEEESGGGTTHH-HHHHHHCTT--SCEEEECCSCCCCHHHHTTSCHHHHHHHHHHHTTSSEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCccHhHHH-HHHHhhCCC--CeEEEEEcCCCCCHHHHhhCcHhHHHHHHHHHHhCCEEEEecHHHHHHHHHH
Confidence 5789999997765433 344444443 47888888654432 11223344455666666666666665554
Q ss_pred hhhhh-ccC-------------CCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHH
Q 012132 221 TRERL-RIK-------------MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQD 286 (470)
Q Consensus 221 ~~~~~-~~~-------------~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~ 286 (470)
..+.+ +.+ ..++.++|+|||.+.|.+.... .++++|++++ ++.+|+++||+.+.||++
T Consensus 226 ~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~-----~~~~lr~~~~---~~~lIl~VgRLd~~KGi~ 297 (496)
T 3t5t_A 226 VADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQ-----LPEGIEEWAD---GHRLVVHSGRTDPIKNAE 297 (496)
T ss_dssp HHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CC-----CCTTHHHHHT---TSEEEEEEEESSGGGCHH
T ss_pred HHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHH-----HHHHHHHHhC---CceEEEEcccCccccCHH
Confidence 44444 322 1367899999999999765321 1256777776 678899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCc---eEEEEEeCCCCcChHH----HHHHHHHHHhcC----CCCcEEEeccc--CCHHHH
Q 012132 287 LFLHSFYESLELIKEKKLEVPS---VHAVIIGSDMNAQTKF----ESELRNYVMQKK----IQDRVHFVNKT--LTVAPY 353 (470)
Q Consensus 287 ~ll~a~~~l~~~l~~~~~~~~~---~~l~ivG~g~~~~~~~----~~~l~~~~~~~~----l~~~V~~~g~~--~~~~~~ 353 (470)
.+++|+ ++.+ ++|+ +.|+++|.....+.+. ..++++++.+.+ .. .|+|+|.. +++..+
T Consensus 298 ~lL~Af-~ll~-------~~P~~~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~-~V~f~g~v~~~el~al 368 (496)
T 3t5t_A 298 RAVRAF-VLAA-------RGGGLEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSD-TVRIDNDNDVNHTIAC 368 (496)
T ss_dssp HHHHHH-HHHH-------HTSSCTTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTT-SEEEEECCCHHHHHHH
T ss_pred HHHHHH-HHHH-------hCcccceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCc-CEEEeCCCCHHHHHHH
Confidence 999999 8866 3354 6788887543222233 445555555442 22 69999974 789999
Q ss_pred HHhcCEEEEccCCcccccchHHHHHHhcC---CCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhC-HHH
Q 012132 354 LAAIDVLVQNSQAWGECFGRITIEAMAFQ---LPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH-VER 429 (470)
Q Consensus 354 ~~~aDv~v~pS~~~~E~~g~~~lEAma~G---~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~-~~~ 429 (470)
|+.||++++||. .||||++++|||||| .|+|+|+.+|..+.+ +.+|++++|.| +++++++|.+++++ ++.
T Consensus 369 y~~ADv~vv~Sl--rEGfgLv~~EamA~~~~~g~lVlSe~aGa~~~l--~~~allVnP~D--~~~lA~AI~~aL~m~~~e 442 (496)
T 3t5t_A 369 FRRADLLIFNST--VDGQNLSTFEAPLVNERDADVILSETCGAAEVL--GEYCRSVNPFD--LVEQAEAISAALAAGPRQ 442 (496)
T ss_dssp HHHCSEEEECCS--SBSCCSHHHHHHHHCSSCCEEEEETTBTTHHHH--GGGSEEECTTB--HHHHHHHHHHHHHCCHHH
T ss_pred HHhccEEEECcc--cccCChhHHHHHHhCCCCCCEEEeCCCCCHHHh--CCCEEEECCCC--HHHHHHHHHHHHcCCHHH
Confidence 999999999999 999999999999997 899999999988887 35799999999 99999999999996 577
Q ss_pred HHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH
Q 012132 430 RLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 463 (470)
Q Consensus 430 ~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~ 463 (470)
++++.++.++++.+ ++...+++.+++-++..-.
T Consensus 443 r~~r~~~~~~~V~~-~d~~~W~~~fl~~L~~~~~ 475 (496)
T 3t5t_A 443 RAEAAARRRDAARP-WTLEAWVQAQLDGLAADHA 475 (496)
T ss_dssp HHHHHHHHHHHHTT-CBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCHHHHHHHHHHHHhhccc
Confidence 88888999999855 9999999999988877643
No 27
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.96 E-value=3.9e-28 Score=234.61 Aligned_cols=332 Identities=13% Similarity=0.030 Sum_probs=212.1
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhC-CceEEEEecCCCCCchhHHHhhhhhhhhcceee-Eec------------
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-ISA------------ 139 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------ 139 (470)
||||++++...+..| ....++++|.+. ||+|.+++..... .. ........++.. +..
T Consensus 5 mmkIl~v~~~~~~~~---~~~~l~~~L~~~~g~~v~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (376)
T 1v4v_A 5 MKRVVLAFGTRPEAT---KMAPVYLALRGIPGLKPLVLLTGQHR--EQ----LRQALSLFGIQEDRNLDVMQERQALPDL 75 (376)
T ss_dssp CEEEEEEECSHHHHH---HHHHHHHHHHTSTTEEEEEEECSSCH--HH----HHHHHHTTTCCCSEECCCCSSCCCHHHH
T ss_pred ceEEEEEEeccHHHH---HHHHHHHHHHhCCCCceEEEEcCCcH--HH----HHHHHHHcCCCcccccccCCCCccHHHH
Confidence 489999996543222 356789999998 8998877643211 10 011112223221 111
Q ss_pred -----CChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc-----hhhhhcc-cccccceee
Q 012132 140 -----KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF-----KLDYVKH-LPLVAGAMI 208 (470)
Q Consensus 140 -----~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~-----~~~~~~~-~~~~~~~~~ 208 (470)
.....+.+..+||+||+|......+......... ..|+++..++...... .....+. ....+.+++
T Consensus 76 ~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~---~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (376)
T 1v4v_A 76 AARILPQAARALKEMGADYVLVHGDTLTTFAVAWAAFLE---GIPVGHVEAGLRSGNLKEPFPEEANRRLTDVLTDLDFA 152 (376)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEESSCHHHHHHHHHHHHT---TCCEEEETCCCCCSCTTSSTTHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHh---CCCEEEEeCCCccccccCCCchHHHHHHHHHHhceeeC
Confidence 0123445678999999987543323222222111 1355433333211100 0011111 123455666
Q ss_pred eehhhHHHHHHhhhhhhccCCCceEEEecCC-chhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHH
Q 012132 209 DSHVTAEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDL 287 (470)
Q Consensus 209 ~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ 287 (470)
.+....+.+. .+|++.+++.+++|++ |...+... +..++++++ +++++++++||+...||++.
T Consensus 153 ~s~~~~~~l~-----~~g~~~~ki~vi~n~~~d~~~~~~~---------~~~~~~~~~--~~~~vl~~~gr~~~~k~~~~ 216 (376)
T 1v4v_A 153 PTPLAKANLL-----KEGKREEGILVTGQTGVDAVLLAAK---------LGRLPEGLP--EGPYVTVTMHRRENWPLLSD 216 (376)
T ss_dssp SSHHHHHHHH-----TTTCCGGGEEECCCHHHHHHHHHHH---------HCCCCTTCC--SSCEEEECCCCGGGGGGHHH
T ss_pred CCHHHHHHHH-----HcCCCcceEEEECCchHHHHhhhhh---------hhHHHHhcC--CCCEEEEEeCcccchHHHHH
Confidence 6666655444 3477778899999975 32222110 112333332 45677888999988889999
Q ss_pred HHHHHHHHHHHHHhhcccCCceEEEEE-eCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEcc
Q 012132 288 FLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNS 364 (470)
Q Consensus 288 ll~a~~~l~~~l~~~~~~~~~~~l~iv-G~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS 364 (470)
+++|++++.+ ++|+++++++ |++. +..+.+++++.. .++|+|+|+. .++..+|+.||++|.||
T Consensus 217 ll~a~~~l~~-------~~~~~~lv~~~g~~~----~~~~~l~~~~~~---~~~v~~~g~~g~~~~~~~~~~ad~~v~~S 282 (376)
T 1v4v_A 217 LAQALKRVAE-------AFPHLTFVYPVHLNP----VVREAVFPVLKG---VRNFVLLDPLEYGSMAALMRASLLLVTDS 282 (376)
T ss_dssp HHHHHHHHHH-------HCTTSEEEEECCSCH----HHHHHHHHHHTT---CTTEEEECCCCHHHHHHHHHTEEEEEESC
T ss_pred HHHHHHHHHh-------hCCCeEEEEECCCCH----HHHHHHHHHhcc---CCCEEEECCCCHHHHHHHHHhCcEEEECC
Confidence 9999998855 3478898886 6551 256677766542 3589999542 38999999999999988
Q ss_pred CCcccccchHHHHHHhcCCCEEec-CCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 012132 365 QAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE 443 (470)
Q Consensus 365 ~~~~E~~g~~~lEAma~G~PvI~s-~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~ 443 (470)
+ |+ ++|||++|+|||++ +.++..+++.++ +|++++. | +++|+++|.++++|++.+++|++++ +
T Consensus 283 ----~--g~-~lEA~a~G~PvI~~~~~~~~~~~~~~g-~g~lv~~-d--~~~la~~i~~ll~d~~~~~~~~~~~-----~ 346 (376)
T 1v4v_A 283 ----G--GL-QEEGAALGVPVVVLRNVTERPEGLKAG-ILKLAGT-D--PEGVYRVVKGLLENPEELSRMRKAK-----N 346 (376)
T ss_dssp ----H--HH-HHHHHHTTCCEEECSSSCSCHHHHHHT-SEEECCS-C--HHHHHHHHHHHHTCHHHHHHHHHSC-----C
T ss_pred ----c--CH-HHHHHHcCCCEEeccCCCcchhhhcCC-ceEECCC-C--HHHHHHHHHHHHhChHhhhhhcccC-----C
Confidence 2 44 88999999999987 578888887554 8998863 5 9999999999999999999998643 3
Q ss_pred HcChhHHHHHHHHHHHHHHH
Q 012132 444 IFQEHHMAERIAVVLKEVLK 463 (470)
Q Consensus 444 ~fs~~~~~~~~~~~~~~~l~ 463 (470)
.|.+...++++.+.+.+++.
T Consensus 347 ~~~~~~~~~~i~~~i~~~~~ 366 (376)
T 1v4v_A 347 PYGDGKAGLMVARGVAWRLG 366 (376)
T ss_dssp SSCCSCHHHHHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHhc
Confidence 47787888888888888775
No 28
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.94 E-value=2e-27 Score=203.82 Aligned_cols=153 Identities=22% Similarity=0.278 Sum_probs=134.8
Q ss_pred cCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHH--hcCCCCcE
Q 012132 264 LGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM--QKKIQDRV 341 (470)
Q Consensus 264 ~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~--~~~l~~~V 341 (470)
+.++.++++|+++|++.+.||++.+++|+..+ ++++|+|+|++. ..+.++++++ ++++.++|
T Consensus 17 ~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l-----------~~~~l~i~G~~~-----~~~~l~~~~~~~~~~l~~~v 80 (177)
T 2f9f_A 17 FKFKCYGDFWLSVNRIYPEKRIELQLEVFKKL-----------QDEKLYIVGWFS-----KGDHAERYARKIMKIAPDNV 80 (177)
T ss_dssp CCCCCCCSCEEEECCSSGGGTHHHHHHHHHHC-----------TTSCEEEEBCCC-----TTSTHHHHHHHHHHHSCTTE
T ss_pred cccCCCCCEEEEEeccccccCHHHHHHHHHhC-----------CCcEEEEEecCc-----cHHHHHHHHHhhhcccCCcE
Confidence 45667888999999999999999999999876 689999999984 3457778888 78888999
Q ss_pred EEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHH
Q 012132 342 HFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKN 419 (470)
Q Consensus 342 ~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~ 419 (470)
+|+|++ +++..+|+.||++|+||. .|+||++++|||+||+|||+++.++..|++.++.+|+++ ++| +++++++
T Consensus 81 ~~~g~~~~~e~~~~~~~adi~v~ps~--~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~-~~d--~~~l~~~ 155 (177)
T 2f9f_A 81 KFLGSVSEEELIDLYSRCKGLLCTAK--DEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLV-NAD--VNEIIDA 155 (177)
T ss_dssp EEEESCCHHHHHHHHHHCSEEEECCS--SCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEE-CSC--HHHHHHH
T ss_pred EEeCCCCHHHHHHHHHhCCEEEeCCC--cCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEe-CCC--HHHHHHH
Confidence 999997 459999999999999999 999999999999999999999999999999999999999 777 9999999
Q ss_pred HHHHHhCHHH-HHHHHHHH
Q 012132 420 IVKLATHVER-RLTMGKRG 437 (470)
Q Consensus 420 i~~ll~~~~~-~~~~~~~a 437 (470)
|.++++|++. ++++.+++
T Consensus 156 i~~l~~~~~~~~~~~~~~a 174 (177)
T 2f9f_A 156 MKKVSKNPDKFKKDCFRRA 174 (177)
T ss_dssp HHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHH
Confidence 9999998875 44443333
No 29
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.90 E-value=2.3e-22 Score=194.38 Aligned_cols=340 Identities=13% Similarity=0.106 Sum_probs=207.3
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhC-CceEEEEecCCCCCchhHHHhhhhhhhhccee------eEec-----
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ------VISA----- 139 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----- 139 (470)
|+||||++++..-+ +-..+..++++|+++ |+++.++....... . ....+...++. +...
T Consensus 23 ~~m~ki~~v~Gtr~---~~~~~a~li~~l~~~~~~~~~~~~tG~h~~---~---~~~~~~~~~i~~~~~l~~~~~~~~~~ 93 (396)
T 3dzc_A 23 NAMKKVLIVFGTRP---EAIKMAPLVQQLCQDNRFVAKVCVTGQHRE---M---LDQVLELFSITPDFDLNIMEPGQTLN 93 (396)
T ss_dssp -CCEEEEEEECSHH---HHHHHHHHHHHHHHCTTEEEEEEECCSSSH---H---HHHHHHHTTCCCSEECCCCCTTCCHH
T ss_pred CCCCeEEEEEeccH---hHHHHHHHHHHHHhCCCCcEEEEEecccHH---H---HHHHHHhcCCCCceeeecCCCCCCHH
Confidence 55689999985432 124567889999887 78887655332221 0 11111222221 1000
Q ss_pred -------CChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecc-cc---chhhhhcc--cccccce
Q 012132 140 -------KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG-HY---FKLDYVKH--LPLVAGA 206 (470)
Q Consensus 140 -------~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~-~~---~~~~~~~~--~~~~~~~ 206 (470)
.....+.+..+||+||++......+........ ..+|++...++... .+ +.....+. ....+.+
T Consensus 94 ~~~~~~~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~aa~~---~~IPv~h~~ag~rs~~~~~~~~~~~~r~~~~~~a~~~ 170 (396)
T 3dzc_A 94 GVTSKILLGMQQVLSSEQPDVVLVHGDTATTFAASLAAYY---QQIPVGHVEAGLRTGNIYSPWPEEGNRKLTAALTQYH 170 (396)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHT---TTCCEEEETCCCCCSCTTSSTTHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECCchhHHHHHHHHHH---hCCCEEEEECCccccccccCCcHHHHHHHHHHhcCEE
Confidence 112355567899999998755443332222111 11344432222211 11 11111221 1234555
Q ss_pred eeeehhhHHHHHHhhhhhhccCCCceEEEecCC-chhhhhHhhhHHHHHHHHHHHHHHcC-CCCC-CeEEEEEeecc-cC
Q 012132 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLG-VRNE-DLLFAIINSVS-RG 282 (470)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~-~~~i~~vGrl~-~~ 282 (470)
++.+....+.+. +.|++++++.+++|++ |...+.+... ......++++|+++| ++++ ++++++.+|.. ..
T Consensus 171 ~~~se~~~~~l~-----~~G~~~~ki~vvGn~~~d~~~~~~~~~-~~~~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~~~ 244 (396)
T 3dzc_A 171 FAPTDTSRANLL-----QENYNAENIFVTGNTVIDALLAVREKI-HTDMDLQATLESQFPMLDASKKLILVTGHRRESFG 244 (396)
T ss_dssp EESSHHHHHHHH-----HTTCCGGGEEECCCHHHHHHHHHHHHH-HHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCCCT
T ss_pred ECCCHHHHHHHH-----HcCCCcCcEEEECCcHHHHHHHhhhhc-ccchhhHHHHHHHhCccCCCCCEEEEEECCcccch
Confidence 666666555444 4588888999999864 3322221110 000111367889999 4544 45555555643 45
Q ss_pred CCHHHHHHHHHHHHHHHHhhcccCCceEEEEE-eCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCE
Q 012132 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDV 359 (470)
Q Consensus 283 Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~iv-G~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv 359 (470)
|+++.+++|+.++.+ ++|++++++. |.++ ...+.++++ ++..++|++.++. .++..+|+.||+
T Consensus 245 ~~~~~ll~A~~~l~~-------~~~~~~~v~~~g~~~----~~~~~l~~~---~~~~~~v~~~~~lg~~~~~~l~~~ad~ 310 (396)
T 3dzc_A 245 GGFERICQALITTAE-------QHPECQILYPVHLNP----NVREPVNKL---LKGVSNIVLIEPQQYLPFVYLMDRAHI 310 (396)
T ss_dssp THHHHHHHHHHHHHH-------HCTTEEEEEECCBCH----HHHHHHHHH---TTTCTTEEEECCCCHHHHHHHHHHCSE
T ss_pred hHHHHHHHHHHHHHH-------hCCCceEEEEeCCCh----HHHHHHHHH---HcCCCCEEEeCCCCHHHHHHHHHhcCE
Confidence 789999999998865 4588998886 5441 234444443 3445689998875 578899999999
Q ss_pred EEEccCCcccccchHHHHHHhcCCCEEec-CCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012132 360 LVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGY 438 (470)
Q Consensus 360 ~v~pS~~~~E~~g~~~lEAma~G~PvI~s-~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~ 438 (470)
+|.+| | |+ .+|||++|+|||++ +.++.+|++.+| .+++++. | ++++++++.++++|++.+++|++++.
T Consensus 311 vv~~S-----G-g~-~~EA~a~G~PvV~~~~~~~~~e~v~~G-~~~lv~~-d--~~~l~~ai~~ll~d~~~~~~m~~~~~ 379 (396)
T 3dzc_A 311 ILTDS-----G-GI-QEEAPSLGKPVLVMRETTERPEAVAAG-TVKLVGT-N--QQQICDALSLLLTDPQAYQAMSQAHN 379 (396)
T ss_dssp EEESC-----S-GG-GTTGGGGTCCEEECCSSCSCHHHHHHT-SEEECTT-C--HHHHHHHHHHHHHCHHHHHHHHTSCC
T ss_pred EEECC-----c-cH-HHHHHHcCCCEEEccCCCcchHHHHcC-ceEEcCC-C--HHHHHHHHHHHHcCHHHHHHHhhccC
Confidence 99887 1 43 38999999999999 688888888776 5677764 5 99999999999999999999987654
Q ss_pred HHHHHHcChhHHHHHHHHHHH
Q 012132 439 ERVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 439 ~~~~~~fs~~~~~~~~~~~~~ 459 (470)
. |.....++++.+++.
T Consensus 380 ~-----~~~~~aa~ri~~~l~ 395 (396)
T 3dzc_A 380 P-----YGDGKACQRIADILA 395 (396)
T ss_dssp T-----TCCSCHHHHHHHHHH
T ss_pred C-----CcCChHHHHHHHHHh
Confidence 3 556666666666543
No 30
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.89 E-value=7.4e-22 Score=192.94 Aligned_cols=165 Identities=12% Similarity=0.116 Sum_probs=129.0
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc
Q 012132 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~ 347 (470)
+++.++++.|++. .++.+.+.++++.+.+ .+.++++++++... .+.++ +++++|.+.|+.
T Consensus 241 ~~~~vlv~~G~~~-~~~~~~~~~~~~~l~~---------~~~~~~~~~g~~~~----~~~l~------~~~~~v~~~~~~ 300 (412)
T 3otg_A 241 ARPLVYLTLGTSS-GGTVEVLRAAIDGLAG---------LDADVLVASGPSLD----VSGLG------EVPANVRLESWV 300 (412)
T ss_dssp TSCEEEEECTTTT-CSCHHHHHHHHHHHHT---------SSSEEEEECCSSCC----CTTCC------CCCTTEEEESCC
T ss_pred CCCEEEEEcCCCC-cCcHHHHHHHHHHHHc---------CCCEEEEEECCCCC----hhhhc------cCCCcEEEeCCC
Confidence 4557778889886 7788877777776632 35677777665321 11111 346799999998
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHHHHH
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 423 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~l 423 (470)
++.++|+.||++|.+|- +.+++|||++|+|+|+.+.++ ..+.+.+.++|+++++++.++++|+++|.++
T Consensus 301 -~~~~~l~~ad~~v~~~g------~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~l 373 (412)
T 3otg_A 301 -PQAALLPHVDLVVHHGG------SGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRL 373 (412)
T ss_dssp -CHHHHGGGCSEEEESCC------HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHH
T ss_pred -CHHHHHhcCcEEEECCc------hHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHH
Confidence 89999999999996653 479999999999999976654 6777778889999998733399999999999
Q ss_pred HhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Q 012132 424 ATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 460 (470)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 460 (470)
++|++.++++++.+++... .++++++++.+++++.+
T Consensus 374 l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 374 LAEESYRAGARAVAAEIAA-MPGPDEVVRLLPGFASR 409 (412)
T ss_dssp HHCHHHHHHHHHHHHHHHH-SCCHHHHHTTHHHHHC-
T ss_pred HhCHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHhcc
Confidence 9999999999999888764 48999999999888754
No 31
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.88 E-value=1.5e-21 Score=188.83 Aligned_cols=339 Identities=13% Similarity=0.108 Sum_probs=205.5
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhC--CceEEEEecCCCCCchhHHHhhhhhhhhcce------eeEe----
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGV------QVIS---- 138 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---- 138 (470)
.|+||||++++..-+- -..+..++++|+++ |+++.++........ ....+...++ .+..
T Consensus 24 ~m~~~kI~~v~Gtr~~---~~~~a~li~~l~~~~~~~~~~~~~tG~h~~m------~~~~~~~~~i~~~~~l~v~~~~~~ 94 (403)
T 3ot5_A 24 AMAKIKVMSIFGTRPE---AIKMAPLVLALEKEPETFESTVVITAQHREM------LDQVLEIFDIKPDIDLDIMKKGQT 94 (403)
T ss_dssp --CCEEEEEEECSHHH---HHHHHHHHHHHHTCTTTEEEEEEECC-----------CHHHHHHTTCCCSEECCCCC-CCC
T ss_pred ccccceEEEEEecChh---HHHHHHHHHHHHhCCCCCcEEEEEecCcHHH------HHHHHHhcCCCCCcccccCCCCCC
Confidence 3566899999854321 24568899999987 688876653322111 1111122222 1100
Q ss_pred --------cCChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecc-cc---chh-hhhccccc-cc
Q 012132 139 --------AKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG-HY---FKL-DYVKHLPL-VA 204 (470)
Q Consensus 139 --------~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~-~~---~~~-~~~~~~~~-~~ 204 (470)
......+.+..+||+|+++......+........ ..+|++....+... .. +.. ..+..+.. .+
T Consensus 95 ~~~~~~~~~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA~~---~~IPv~h~~aglrs~~~~~~~p~~~~r~~~~~~a~ 171 (403)
T 3ot5_A 95 LAEITSRVMNGINEVIAAENPDIVLVHGDTTTSFAAGLATFY---QQKMLGHVEAGLRTWNKYSPFPEEMNRQLTGVMAD 171 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHH---TTCEEEEESCCCCCSCTTSSTTHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEECCchhHHHHHHHHHH---hCCCEEEEECCccccccccCCcHHHHHHHHHHhcC
Confidence 0112355567999999998754333322111111 11344322222111 11 111 11122222 34
Q ss_pred ceeeeehhhHHHHHHhhhhhhccCCCceEEEecC-CchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeeccc-C
Q 012132 205 GAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLG-NSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR-G 282 (470)
Q Consensus 205 ~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ng-vd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~-~ 282 (470)
.+++.+....+.+. +.|++++++.+++|+ +|...+.+.... +.+.++++ +++++++++.||... .
T Consensus 172 ~~~~~se~~~~~l~-----~~Gi~~~~i~vvGn~~~D~~~~~~~~~~------~~~~~~~l--~~~~~vlv~~~r~~~~~ 238 (403)
T 3ot5_A 172 IHFSPTKQAKENLL-----AEGKDPATIFVTGNTAIDALKTTVQKDY------HHPILENL--GDNRLILMTAHRRENLG 238 (403)
T ss_dssp EEEESSHHHHHHHH-----HTTCCGGGEEECCCHHHHHHHHHSCTTC------CCHHHHSC--TTCEEEEECCCCHHHHT
T ss_pred EEECCCHHHHHHHH-----HcCCCcccEEEeCCchHHHHHhhhhhhc------chHHHHhc--cCCCEEEEEeCcccccC
Confidence 45555555555444 458888899999985 444333221100 12344445 455666777787643 5
Q ss_pred CCHHHHHHHHHHHHHHHHhhcccCCceEEEEEe-CCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCE
Q 012132 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDV 359 (470)
Q Consensus 283 Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG-~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv 359 (470)
|+++.+++|+.++.+ ++|++++++.+ .++ ...+.++++ ++..++|+++|+. .++..+|+.||+
T Consensus 239 ~~l~~ll~a~~~l~~-------~~~~~~~v~~~~~~~----~~~~~l~~~---~~~~~~v~l~~~l~~~~~~~l~~~ad~ 304 (403)
T 3ot5_A 239 EPMQGMFEAVREIVE-------SREDTELVYPMHLNP----AVREKAMAI---LGGHERIHLIEPLDAIDFHNFLRKSYL 304 (403)
T ss_dssp THHHHHHHHHHHHHH-------HCTTEEEEEECCSCH----HHHHHHHHH---HTTCTTEEEECCCCHHHHHHHHHHEEE
T ss_pred cHHHHHHHHHHHHHH-------hCCCceEEEecCCCH----HHHHHHHHH---hCCCCCEEEeCCCCHHHHHHHHHhcCE
Confidence 789999999998865 45889998874 431 133344433 3444689999986 489999999999
Q ss_pred EEEccCCcccccchHHHHHHhcCCCEEec-CCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012132 360 LVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGY 438 (470)
Q Consensus 360 ~v~pS~~~~E~~g~~~lEAma~G~PvI~s-~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~ 438 (470)
+|.+| |...+|||++|+|+|++ +.++..|.+..| +|++++. | ++++++++.++++|++.+++|++++.
T Consensus 305 vv~~S-------Gg~~~EA~a~g~PvV~~~~~~~~~e~v~~g-~~~lv~~-d--~~~l~~ai~~ll~~~~~~~~m~~~~~ 373 (403)
T 3ot5_A 305 VFTDS-------GGVQEEAPGMGVPVLVLRDTTERPEGIEAG-TLKLIGT-N--KENLIKEALDLLDNKESHDKMAQAAN 373 (403)
T ss_dssp EEECC-------HHHHHHGGGTTCCEEECCSSCSCHHHHHHT-SEEECCS-C--HHHHHHHHHHHHHCHHHHHHHHHSCC
T ss_pred EEECC-------ccHHHHHHHhCCCEEEecCCCcchhheeCC-cEEEcCC-C--HHHHHHHHHHHHcCHHHHHHHHhhcC
Confidence 99776 33348999999999999 678888887655 8888875 5 99999999999999999998876544
Q ss_pred HHHHHHcChhHHHHHHHHHHHHHHHh
Q 012132 439 ERVKEIFQEHHMAERIAVVLKEVLKK 464 (470)
Q Consensus 439 ~~~~~~fs~~~~~~~~~~~~~~~l~~ 464 (470)
. |.....++++.+++.+.+..
T Consensus 374 ~-----~g~~~aa~rI~~~l~~~l~~ 394 (403)
T 3ot5_A 374 P-----YGDGFAANRILAAIKSHFEE 394 (403)
T ss_dssp T-----TCCSCHHHHHHHHHHHHHTC
T ss_pred c-----ccCCcHHHHHHHHHHHHhCC
Confidence 3 56666677777777776653
No 32
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.87 E-value=6e-21 Score=182.61 Aligned_cols=319 Identities=13% Similarity=0.069 Sum_probs=188.7
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC------------
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------------ 140 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 140 (470)
|++||++... ..||--.-...++++|+++||+|.+++...+-+ .......|+++....
T Consensus 1 M~~~i~i~~G--GTgGHi~palala~~L~~~g~~V~~vg~~~g~e--------~~~v~~~g~~~~~i~~~~~~~~~~~~~ 70 (365)
T 3s2u_A 1 MKGNVLIMAG--GTGGHVFPALACAREFQARGYAVHWLGTPRGIE--------NDLVPKAGLPLHLIQVSGLRGKGLKSL 70 (365)
T ss_dssp --CEEEEECC--SSHHHHHHHHHHHHHHHHTTCEEEEEECSSSTH--------HHHTGGGTCCEEECC------------
T ss_pred CCCcEEEEcC--CCHHHHHHHHHHHHHHHhCCCEEEEEECCchHh--------hchhhhcCCcEEEEECCCcCCCCHHHH
Confidence 4678988652 112223447889999999999999998654321 111223333332211
Q ss_pred ------------ChhhHHhhcCCcEEEEcccchhhhHHHH-hhhcCCccccceeeEEeeeccccchhhhhccccccccee
Q 012132 141 ------------GQETINTALKADLIVLNTAVAGKWLDAV-LKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAM 207 (470)
Q Consensus 141 ------------~~~~~~~~~~~DiV~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ 207 (470)
....+.++.+||+|+++..........+ ...+ .|++ +|+..... . ...+.+......+
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~~~PDvVi~~g~~~s~p~~laA~~~~-----iP~v--ihe~n~~~-G-~~nr~l~~~a~~v 141 (365)
T 3s2u_A 71 VKAPLELLKSLFQALRVIRQLRPVCVLGLGGYVTGPGGLAARLNG-----VPLV--IHEQNAVA-G-TANRSLAPIARRV 141 (365)
T ss_dssp --CHHHHHHHHHHHHHHHHHHCCSEEEECSSSTHHHHHHHHHHTT-----CCEE--EEECSSSC-C-HHHHHHGGGCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHcC-----CCEE--EEecchhh-h-hHHHhhcccccee
Confidence 1123456789999999876544332222 2222 3444 35432111 0 1111111122222
Q ss_pred eeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEE-EEEeecccCCCHH
Q 012132 208 IDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLF-AIINSVSRGKGQD 286 (470)
Q Consensus 208 ~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i-~~vGrl~~~Kg~~ 286 (470)
..+... .+ ...+++.++.|++..+.+... +.+.+++.+++.+ ++.|++...+..+
T Consensus 142 ~~~~~~----------~~-~~~~k~~~~g~pvr~~~~~~~-------------~~~~~~~~~~~~ilv~gGs~g~~~~~~ 197 (365)
T 3s2u_A 142 CEAFPD----------TF-PASDKRLTTGNPVRGELFLDA-------------HARAPLTGRRVNLLVLGGSLGAEPLNK 197 (365)
T ss_dssp EESSTT----------SS-CC---CEECCCCCCGGGCCCT-------------TSSCCCTTSCCEEEECCTTTTCSHHHH
T ss_pred eecccc----------cc-cCcCcEEEECCCCchhhccch-------------hhhcccCCCCcEEEEECCcCCccccch
Confidence 222111 11 134567788888887765432 2234555555544 4456777777777
Q ss_pred HHHHHHHHHHHHHHhhcccCCceEEEE-EeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccC
Q 012132 287 LFLHSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 365 (470)
Q Consensus 287 ~ll~a~~~l~~~l~~~~~~~~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~ 365 (470)
.+.++++.+.. ..+..+++ +|.+ ..+.+.+..++.+. ++.+.++.+++.++|+.||++|..+
T Consensus 198 ~~~~al~~l~~--------~~~~~vi~~~G~~------~~~~~~~~~~~~~~--~~~v~~f~~dm~~~l~~aDlvI~ra- 260 (365)
T 3s2u_A 198 LLPEALAQVPL--------EIRPAIRHQAGRQ------HAEITAERYRTVAV--EADVAPFISDMAAAYAWADLVICRA- 260 (365)
T ss_dssp HHHHHHHTSCT--------TTCCEEEEECCTT------THHHHHHHHHHTTC--CCEEESCCSCHHHHHHHCSEEEECC-
T ss_pred hhHHHHHhccc--------ccceEEEEecCcc------ccccccceeccccc--ccccccchhhhhhhhccceEEEecC-
Confidence 77777765521 13444444 4443 34556666666654 6888999999999999999999433
Q ss_pred CcccccchHHHHHHhcCCCEEecCCCCc--------ceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHH
Q 012132 366 AWGECFGRITIEAMAFQLPVLGTAAGGT--------TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRG 437 (470)
Q Consensus 366 ~~~E~~g~~~lEAma~G~PvI~s~~~g~--------~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a 437 (470)
-++++.|+|++|+|+|..+.+.. .+.+.+.+.|++++..+.++++|+++|.++++|++.+++|++++
T Consensus 261 -----G~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~~~~m~~~a 335 (365)
T 3s2u_A 261 -----GALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQA 335 (365)
T ss_dssp -----CHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCTHHHHHHHHHH
T ss_pred -----CcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 37899999999999998876532 23455666889988776668999999999999999999999999
Q ss_pred HHHHHHHcChhHHHHHHHHHHHHH
Q 012132 438 YERVKEIFQEHHMAERIAVVLKEV 461 (470)
Q Consensus 438 ~~~~~~~fs~~~~~~~~~~~~~~~ 461 (470)
++... ...++++.+.+.++
T Consensus 336 ~~~~~-----~~aa~~ia~~i~~l 354 (365)
T 3s2u_A 336 RSLAK-----PEATRTVVDACLEV 354 (365)
T ss_dssp HHTCC-----TTHHHHHHHHHHHH
T ss_pred HhcCC-----ccHHHHHHHHHHHH
Confidence 87542 23344444444444
No 33
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.85 E-value=3.6e-20 Score=173.77 Aligned_cols=289 Identities=9% Similarity=0.032 Sum_probs=189.9
Q ss_pred CchhHHHHHHHHHHHhCCceEEEEecCCC-CCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCcEEEEcccchhh--
Q 012132 87 SGGPLLLMELAFLLRGVGTKVNWITIQKP-SEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGK-- 163 (470)
Q Consensus 87 ~G~~~~~~~l~~~L~~~G~~V~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV~~~~~~~~~-- 163 (470)
.+|...-.+..+-+.+.|++-.-+..... .... ..+...+. ..+....++|+|+.++|....
T Consensus 25 ~a~~ka~~dv~~i~~~~G~~~l~~~~~~~~~~~~---~~~~~~~~------------~~~~~~~~~DvIi~q~P~~~~~~ 89 (339)
T 3rhz_A 25 STAQLCQNTVTDVAVSLGYRELGIYCYQIHTDSE---SELSKRLD------------GIVAGLRHGDVVIFQTPTWNTTE 89 (339)
T ss_dssp CHHHHHHHHHHHHHHHTTCEEEEEECCCGGGSCH---HHHHHHHH------------HHTTTCCTTCEEEEEECCSSCHH
T ss_pred chHHHHHHHHHHHHHHCCCeEEEeeccccccccH---HHHHHHHH------------HHHhcCCCCCEEEEeCCCcchhh
Confidence 45567777777778888987554442211 1111 01111111 012234689999999876421
Q ss_pred hHHHHhhhcCCccccceeeEEeeeccccchh------hhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEec
Q 012132 164 WLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL------DYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHL 237 (470)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~n 237 (470)
+....+.. ++....++++.+|+..+..+.. .....++.++.+++.|....+.+.+ .|++..++.++++
T Consensus 90 ~~~~~~~~-lk~~~~k~i~~ihDl~pl~~~~~~~~~~~E~~~y~~aD~Ii~~S~~~~~~l~~-----~G~~~~ki~~~~~ 163 (339)
T 3rhz_A 90 FDEKLMNK-LKLYDIKIVLFIHDVVPLMFSGNFYLMDRTIAYYNKADVVVAPSQKMIDKLRD-----FGMNVSKTVVQGM 163 (339)
T ss_dssp HHHHHHHH-HTTSSCEEEEEESCCHHHHCGGGGGGHHHHHHHHTTCSEEEESCHHHHHHHHH-----TTCCCSEEEECCS
T ss_pred HHHHHHHH-HHhcCCEEEEEecccHHhhCccchhhHHHHHHHHHHCCEEEECCHHHHHHHHH-----cCCCcCceeecCC
Confidence 21222222 1222478999999987644321 1234567889999999988777663 4776666654443
Q ss_pred CCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCC
Q 012132 238 GNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSD 317 (470)
Q Consensus 238 gvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g 317 (470)
. |... +.+ ...+.++++++|+|++.....+..+ .++++|+|+|+|
T Consensus 164 ~-~~~~--~~~---------------~~~~~~~~~i~yaG~l~k~~~L~~l-----------------~~~~~f~ivG~G 208 (339)
T 3rhz_A 164 W-DHPT--QAP---------------MFPAGLKREIHFPGNPERFSFVKEW-----------------KYDIPLKVYTWQ 208 (339)
T ss_dssp C-CCCC--CCC---------------CCCCEEEEEEEECSCTTTCGGGGGC-----------------CCSSCEEEEESC
T ss_pred C-CccC--ccc---------------ccccCCCcEEEEeCCcchhhHHHhC-----------------CCCCeEEEEeCC
Confidence 2 2110 000 0122356889999999853222211 178999999999
Q ss_pred CCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCC-----cccccchHHHHHHhcCCCEEecCC
Q 012132 318 MNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA-----WGECFGRITIEAMAFQLPVLGTAA 390 (470)
Q Consensus 318 ~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~-----~~E~~g~~~lEAma~G~PvI~s~~ 390 (470)
+.. .++ +|+|+|++ +++..+|+.+|+.++.... ...++|.++.||||||+|||+++.
T Consensus 209 ~~~---------------~l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~ 272 (339)
T 3rhz_A 209 NVE---------------LPQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEG 272 (339)
T ss_dssp CCC---------------CCT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETT
T ss_pred ccc---------------CcC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccC
Confidence 521 244 89999986 8899999988888876220 012568999999999999999999
Q ss_pred CCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHH
Q 012132 391 GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 454 (470)
Q Consensus 391 ~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 454 (470)
++..+++.++.+|++++ + .++++++|..+ +++.+++|++++++..++ +++..+.++.
T Consensus 273 ~~~~~~v~~~~~G~~~~--~--~~e~~~~i~~l--~~~~~~~m~~na~~~a~~-~~~~~f~k~~ 329 (339)
T 3rhz_A 273 IANQELIENNGLGWIVK--D--VEEAIMKVKNV--NEDEYIELVKNVRSFNPI-LRKGFFTRRL 329 (339)
T ss_dssp CTTTHHHHHHTCEEEES--S--HHHHHHHHHHC--CHHHHHHHHHHHHHHTHH-HHTTHHHHHH
T ss_pred hhHHHHHHhCCeEEEeC--C--HHHHHHHHHHh--CHHHHHHHHHHHHHHHHH-hhccHHHHHH
Confidence 99999999999999987 3 88999999886 466789999999987654 7777666544
No 34
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.85 E-value=3.5e-21 Score=187.19 Aligned_cols=157 Identities=11% Similarity=0.112 Sum_probs=108.1
Q ss_pred CCCeEEEEEeecccCC----------CHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCC
Q 012132 268 NEDLLFAIINSVSRGK----------GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 337 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~K----------g~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l 337 (470)
.++.+++++|++...| .++.+++++.+ .++++++++++. ..+.++ .+
T Consensus 226 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~------------~~~~~v~~~~~~-----~~~~l~------~~ 282 (398)
T 4fzr_A 226 KQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPK------------LGFEVVVAVSDK-----LAQTLQ------PL 282 (398)
T ss_dssp SSCEEECC----------------CCSHHHHHHHGGG------------GTCEEEECCCC-------------------C
T ss_pred CCCEEEEEccCcccccccccccchHHHHHHHHHHHHh------------CCCEEEEEeCCc-----chhhhc------cC
Confidence 4567888899996554 35555555542 357888888762 233332 34
Q ss_pred CCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCC----CCcceeeecCceeeeecCCCCCh
Q 012132 338 QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA----GGTTEIVVNGTTGLLHPVGKEGI 413 (470)
Q Consensus 338 ~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~----~g~~e~v~~~~~G~l~~~~d~~~ 413 (470)
+++|++.|+. ++.++++.||++|. .+.+.+++|||++|+|+|+... .+..+.+.+.+.|+++++++.++
T Consensus 283 ~~~v~~~~~~-~~~~ll~~ad~~v~------~gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~ 355 (398)
T 4fzr_A 283 PEGVLAAGQF-PLSAIMPACDVVVH------HGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGV 355 (398)
T ss_dssp CTTEEEESCC-CHHHHGGGCSEEEE------CCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEECC------
T ss_pred CCcEEEeCcC-CHHHHHhhCCEEEe------cCCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCH
Confidence 6899999997 68999999999993 4447899999999999999544 45677788888999998774348
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Q 012132 414 TPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 455 (470)
Q Consensus 414 ~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 455 (470)
++|+++|.++++|++.++++++.+++.. +..+++.+++.++
T Consensus 356 ~~l~~ai~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ 396 (398)
T 4fzr_A 356 ESVLAACARIRDDSSYVGNARRLAAEMA-TLPTPADIVRLIE 396 (398)
T ss_dssp -CHHHHHHHHHHCTHHHHHHHHHHHHHT-TSCCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHH-cCCCHHHHHHHHh
Confidence 9999999999999999999988888765 4488888887764
No 35
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.84 E-value=6.2e-20 Score=180.31 Aligned_cols=167 Identities=14% Similarity=0.141 Sum_probs=121.6
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEE-EEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc
Q 012132 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHA-VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l-~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~ 346 (470)
++..+++++|++. .++.+.+.+++..+. +.+++++ +++|++. ..+.++ .++++|.+.|+
T Consensus 231 ~~~~v~v~~Gs~~-~~~~~~~~~~~~~l~--------~~~~~~~~~~~G~~~-----~~~~l~------~~~~~v~~~~~ 290 (430)
T 2iyf_A 231 AEKVVLVSLGSAF-TKQPAFYRECVRAFG--------NLPGWHLVLQIGRKV-----TPAELG------ELPDNVEVHDW 290 (430)
T ss_dssp CSEEEEEECTTTC-C-CHHHHHHHHHHHT--------TCTTEEEEEECC--------CGGGGC------SCCTTEEEESS
T ss_pred CCCeEEEEcCCCC-CCcHHHHHHHHHHHh--------cCCCeEEEEEeCCCC-----ChHHhc------cCCCCeEEEec
Confidence 3457888899987 555555544444331 1146777 5678763 122221 24578999999
Q ss_pred cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHHHH
Q 012132 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVK 422 (470)
Q Consensus 347 ~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ 422 (470)
.++. ++|+.+|++|..+- +++++|||++|+|+|+++.++ ..+.+.+.+.|++++.++.++++|+++|.+
T Consensus 291 ~~~~-~~l~~ad~~v~~~G------~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ 363 (430)
T 2iyf_A 291 VPQL-AILRQADLFVTHAG------AGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALA 363 (430)
T ss_dssp CCHH-HHHTTCSEEEECCC------HHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHH
T ss_pred CCHH-HHhhccCEEEECCC------ccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHH
Confidence 8777 89999999996553 479999999999999998765 455566777899998774348999999999
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Q 012132 423 LATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 462 (470)
Q Consensus 423 ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l 462 (470)
+++|++.++++++.+++... .++++++++.+++++++..
T Consensus 364 ll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~ 402 (430)
T 2iyf_A 364 LVDDPEVARRLRRIQAEMAQ-EGGTRRAADLIEAELPARH 402 (430)
T ss_dssp HHHCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHTTSCC--
T ss_pred HHcCHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHhhccc
Confidence 99999999999998888665 4899999999988876654
No 36
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.82 E-value=5.2e-20 Score=178.52 Aligned_cols=164 Identities=11% Similarity=0.108 Sum_probs=122.5
Q ss_pred CCeEEEEEeecccCCCH-HHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc
Q 012132 269 EDLLFAIINSVSRGKGQ-DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (470)
Q Consensus 269 ~~~~i~~vGrl~~~Kg~-~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~ 347 (470)
++.++++.|+....|+. ..+++++.+. + +.|+++++++|++. ..+.++ +++++|++.|+.
T Consensus 218 ~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~-------~~p~~~~v~~~~~~-----~~~~l~------~~~~~v~~~~~~ 278 (391)
T 3tsa_A 218 ARRVCICMGRMVLNATGPAPLLRAVAAA-T-------ELPGVEAVIAVPPE-----HRALLT------DLPDNARIAESV 278 (391)
T ss_dssp SEEEEEECCHHHHHHHCSHHHHHHHHHH-H-------TSTTEEEEEECCGG-----GGGGCT------TCCTTEEECCSC
T ss_pred CCEEEEEcCCCCCcccchHHHHHHHHHh-c-------cCCCeEEEEEECCc-----chhhcc------cCCCCEEEeccC
Confidence 45677778988765544 6677776655 4 45789999998862 222221 356799999986
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCC----CCcceeeecCceeeeecC--CCCChHHHHHHHH
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA----GGTTEIVVNGTTGLLHPV--GKEGITPLAKNIV 421 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~----~g~~e~v~~~~~G~l~~~--~d~~~~~la~~i~ 421 (470)
+..++++.||++|. ++.+.+++|||++|+|+|+... .+..+.+.+.+.|.++++ .+.++++|++++.
T Consensus 279 -~~~~ll~~ad~~v~------~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~ 351 (391)
T 3tsa_A 279 -PLNLFLRTCELVIC------AGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIA 351 (391)
T ss_dssp -CGGGTGGGCSEEEE------CCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHH
T ss_pred -CHHHHHhhCCEEEe------CCCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEecCcccccCCHHHHHHHHH
Confidence 45678899999994 4446799999999999999543 445667778889999988 2223999999999
Q ss_pred HHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Q 012132 422 KLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 422 ~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 459 (470)
++++|++.++++++.+++.. +..+++++++.++++..
T Consensus 352 ~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 352 TVLGDTGFAAAAIKLSDEIT-AMPHPAALVRTLENTAA 388 (391)
T ss_dssp HHHTCTHHHHHHHHHHHHHH-TSCCHHHHHHHHHHC--
T ss_pred HHHcCHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHh
Confidence 99999999999988877765 45888888887776553
No 37
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.80 E-value=1.3e-18 Score=169.07 Aligned_cols=159 Identities=18% Similarity=0.112 Sum_probs=119.6
Q ss_pred CCCeEEEEEeecccC-CCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc
Q 012132 268 NEDLLFAIINSVSRG-KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~-Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~ 346 (470)
+.+.+++++|++... ++.+.+.++++.+.+ .+++++++|++.+ .+.++ +++++|.+.|+
T Consensus 231 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~---------~~~~~v~~~g~~~-----~~~l~------~~~~~v~~~~~ 290 (398)
T 3oti_A 231 ARPEVAITMGTIELQAFGIGAVEPIIAAAGE---------VDADFVLALGDLD-----ISPLG------TLPRNVRAVGW 290 (398)
T ss_dssp SSCEEEECCTTTHHHHHCGGGHHHHHHHHHT---------SSSEEEEECTTSC-----CGGGC------SCCTTEEEESS
T ss_pred CCCEEEEEcCCCccccCcHHHHHHHHHHHHc---------CCCEEEEEECCcC-----hhhhc------cCCCcEEEEcc
Confidence 345778888998654 466666555555432 4688999988732 11111 45679999999
Q ss_pred cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEe----cCCCCcc--eeeecCceeeeecCCCCChHHHHHHH
Q 012132 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG----TAAGGTT--EIVVNGTTGLLHPVGKEGITPLAKNI 420 (470)
Q Consensus 347 ~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~----s~~~g~~--e~v~~~~~G~l~~~~d~~~~~la~~i 420 (470)
. ++.++|+.||++|. .+.+.++.|||++|+|+|+ .+.++.. +.+.+.+.|+++++.+.+.+.++
T Consensus 291 ~-~~~~ll~~ad~~v~------~~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l~--- 360 (398)
T 3oti_A 291 T-PLHTLLRTCTAVVH------HGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLLR--- 360 (398)
T ss_dssp C-CHHHHHTTCSEEEE------CCCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEECCGGGCCHHHHH---
T ss_pred C-CHHHHHhhCCEEEE------CCCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEeeCCCCCCHHHHH---
Confidence 8 89999999999994 4446799999999999999 5556777 88888889999987643355555
Q ss_pred HHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Q 012132 421 VKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 421 ~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 458 (470)
++++|++.++++++.+++.. +..+++.+++.++++.
T Consensus 361 -~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 361 -RLIGDESLRTAAREVREEMV-ALPTPAETVRRIVERI 396 (398)
T ss_dssp -HHHHCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHH
T ss_pred -HHHcCHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHh
Confidence 88899999999988887755 5589999888887764
No 38
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.80 E-value=1.5e-18 Score=168.84 Aligned_cols=164 Identities=13% Similarity=0.130 Sum_probs=115.7
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEE-EeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc
Q 012132 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~ 346 (470)
+.+.++++.|+....+ .+.+.+.++.+ . + .+.++++ +|++.. .+.++ .++++|++.|+
T Consensus 230 ~~~~v~v~~G~~~~~~-~~~~~~~~~~~----~----~-~~~~~~~~~g~~~~-----~~~~~------~~~~~v~~~~~ 288 (402)
T 3ia7_A 230 DAPVLLVSLGNQFNEH-PEFFRACAQAF----A----D-TPWHVVMAIGGFLD-----PAVLG------PLPPNVEAHQW 288 (402)
T ss_dssp TCCEEEEECCSCSSCC-HHHHHHHHHHH----T----T-SSCEEEEECCTTSC-----GGGGC------SCCTTEEEESC
T ss_pred CCCEEEEECCCCCcch-HHHHHHHHHHH----h----c-CCcEEEEEeCCcCC-----hhhhC------CCCCcEEEecC
Confidence 4557788889886554 22222222222 1 1 2356655 454421 11121 24679999999
Q ss_pred cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCC-----CCcceeeecCceeeeecCCCCChHHHHHHHH
Q 012132 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA-----GGTTEIVVNGTTGLLHPVGKEGITPLAKNIV 421 (470)
Q Consensus 347 ~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~-----~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~ 421 (470)
.++. ++|+.||++|..+- ..+++|||++|+|+|+... .+..+.+.+.+.|..++.++.+++++++++.
T Consensus 289 ~~~~-~ll~~ad~~v~~~G------~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~ 361 (402)
T 3ia7_A 289 IPFH-SVLAHARACLTHGT------TGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVE 361 (402)
T ss_dssp CCHH-HHHTTEEEEEECCC------HHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHH
T ss_pred CCHH-HHHhhCCEEEECCC------HHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHH
Confidence 8777 99999999996653 4788999999999996544 3566677788899999876434999999999
Q ss_pred HHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Q 012132 422 KLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 460 (470)
Q Consensus 422 ~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 460 (470)
++++|++.++++++.+++.. +..+++++++.+++++.+
T Consensus 362 ~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 362 RLAADSAVRERVRRMQRDIL-SSGGPARAADEVEAYLGR 399 (402)
T ss_dssp HHHHCHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHh-hCChHHHHHHHHHHHHhh
Confidence 99999999999888777654 447888888888777654
No 39
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.75 E-value=3.1e-17 Score=160.20 Aligned_cols=164 Identities=13% Similarity=0.099 Sum_probs=113.4
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEE-EeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc
Q 012132 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~ 346 (470)
+.+.++++.|+.....+ +.+...++.+ . +.+ +++++ +|++.. .+.++ .++++|.+.|+
T Consensus 246 ~~~~v~v~~Gs~~~~~~-~~~~~~~~al----~----~~~-~~~v~~~g~~~~-----~~~l~------~~~~~v~~~~~ 304 (415)
T 3rsc_A 246 DLPVVLVSLGTTFNDRP-GFFRDCARAF----D----GQP-WHVVMTLGGQVD-----PAALG------DLPPNVEAHRW 304 (415)
T ss_dssp CCCEEEEECTTTSCCCH-HHHHHHHHHH----T----TSS-CEEEEECTTTSC-----GGGGC------CCCTTEEEESC
T ss_pred CCCEEEEECCCCCCChH-HHHHHHHHHH----h----cCC-cEEEEEeCCCCC-----hHHhc------CCCCcEEEEec
Confidence 44577788888754432 2222222222 1 124 77776 554421 11221 35679999999
Q ss_pred cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCC----CCcceeeecCceeeeecCCCCChHHHHHHHHH
Q 012132 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA----GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVK 422 (470)
Q Consensus 347 ~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~----~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ 422 (470)
..+. ++|+.||++|..+- ..+++|||++|+|+|+... ....+.+.+.+.|..++.++.++++++++|.+
T Consensus 305 ~~~~-~ll~~ad~~v~~~G------~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ 377 (415)
T 3rsc_A 305 VPHV-KVLEQATVCVTHGG------MGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGA 377 (415)
T ss_dssp CCHH-HHHHHEEEEEESCC------HHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHH
T ss_pred CCHH-HHHhhCCEEEECCc------HHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHH
Confidence 8766 99999999996552 4689999999999999543 33566666777888888764348999999999
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Q 012132 423 LATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 460 (470)
Q Consensus 423 ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 460 (470)
+++|++.++++.+.+++.. +..+.+.+++.+++++.+
T Consensus 378 ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~ 414 (415)
T 3rsc_A 378 VAADPALLARVEAMRGHVR-RAGGAARAADAVEAYLAR 414 (415)
T ss_dssp HHTCHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhhc
Confidence 9999999999888777654 447888888877776643
No 40
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.72 E-value=4.7e-16 Score=150.22 Aligned_cols=158 Identities=12% Similarity=0.080 Sum_probs=115.1
Q ss_pred CCCeEEEEEeecccC-------CCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCc
Q 012132 268 NEDLLFAIINSVSRG-------KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDR 340 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~-------Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~ 340 (470)
+...+++++|++... +.++.+++++.+ .++++++++++ +..+.++. ++++
T Consensus 209 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~------------~~~~~~~~~g~-----~~~~~l~~------~~~~ 265 (384)
T 2p6p_A 209 TRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVR------------WDVELIVAAPD-----TVAEALRA------EVPQ 265 (384)
T ss_dssp SSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHT------------TTCEEEEECCH-----HHHHHHHH------HCTT
T ss_pred CCCEEEEECCCCCccccccccHHHHHHHHHHHhc------------CCcEEEEEeCC-----CCHHhhCC------CCCc
Confidence 345788889998765 567777777653 35788887654 23333332 3568
Q ss_pred EEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCChHHH
Q 012132 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPL 416 (470)
Q Consensus 341 V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~l 416 (470)
|.+ |+. +..++|+.+|++|..+ .+++++|||++|+|+|+.+..+ ..+.+.+.+.|+.++..+.+.+++
T Consensus 266 v~~-~~~-~~~~~l~~~d~~v~~~------G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~~~~~~~~~~~~l 337 (384)
T 2p6p_A 266 ARV-GWT-PLDVVAPTCDLLVHHA------GGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDSTEAI 337 (384)
T ss_dssp SEE-ECC-CHHHHGGGCSEEEECS------CTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTCCCHHHH
T ss_pred eEE-cCC-CHHHHHhhCCEEEeCC------cHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeEecCcCCCCHHHH
Confidence 999 987 4688999999999654 3579999999999999998643 556666677899988664348999
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Q 012132 417 AKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVV 457 (470)
Q Consensus 417 a~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~ 457 (470)
+++|.++++|++.++++++.+++.... -..+++++.++++
T Consensus 338 ~~~i~~ll~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~ 377 (384)
T 2p6p_A 338 ADSCQELQAKDTYARRAQDLSREISGM-PLPATVVTALEQL 377 (384)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHTS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHH
Confidence 999999999999888888777665432 3555555554444
No 41
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.65 E-value=1.7e-14 Score=142.26 Aligned_cols=185 Identities=13% Similarity=0.066 Sum_probs=132.3
Q ss_pred HHHcCCCCC--CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEE--EEeCCCCcChHHHHHHHHHHHhcC
Q 012132 261 RESLGVRNE--DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAV--IIGSDMNAQTKFESELRNYVMQKK 336 (470)
Q Consensus 261 r~~~~~~~~--~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~--ivG~g~~~~~~~~~~l~~~~~~~~ 336 (470)
|..++++.+ .++++.+++ ..|..+.+++++.++.+ +.|+..++ ++|.+.. ....+.+.+.+.|
T Consensus 430 r~~~~lp~~~G~v~Fg~fn~--~~Ki~p~~l~~WarIL~-------~vP~s~L~l~~~g~~~g----~~~~~~~~~~~~G 496 (631)
T 3q3e_A 430 KVDYLLRENPEVVNIGIAST--TMKLNPYFLEALKAIRD-------RAKVKVHFHFALGQSNG----ITHPYVERFIKSY 496 (631)
T ss_dssp SCCCCCCSCCSEEEEEEEEC--STTCCHHHHHHHHHHHH-------HCSSEEEEEEEESSCCG----GGHHHHHHHHHHH
T ss_pred cccccCCcCCCeEEEEECCc--cccCCHHHHHHHHHHHH-------hCCCcEEEEEecCCCch----hhHHHHHHHHHcC
Confidence 345677765 577777776 57999999999999877 45777664 3564311 2233333455678
Q ss_pred CCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeee------cCceeeeecC
Q 012132 337 IQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVV------NGTTGLLHPV 408 (470)
Q Consensus 337 l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~------~~~~G~l~~~ 408 (470)
+.++|.|.|.. .+....|+.+|+++.|+. + +.|++.+|||+||+|||+...++...-+. -|-.++++..
T Consensus 497 I~~Rv~F~g~~p~~e~la~y~~aDIfLDpfp--y-~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA~ 573 (631)
T 3q3e_A 497 LGDSATAHPHSPYHQYLRILHNCDMMVNPFP--F-GNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIAN 573 (631)
T ss_dssp HGGGEEEECCCCHHHHHHHHHTCSEEECCSS--S-CCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEES
T ss_pred CCccEEEcCCCCHHHHHHHHhcCcEEEeCCc--c-cCChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceecC
Confidence 88899999985 566788999999999986 4 55999999999999999976554443321 1333432322
Q ss_pred CCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHh
Q 012132 409 GKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 464 (470)
Q Consensus 409 ~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~ 464 (470)
+ .+++++...++.+|++.+++++++.++......-++...+++++.|++++.+
T Consensus 574 -d--~eeYv~~Av~La~D~~~l~~LR~~Lr~~~~~spLFd~~~~~~e~~ye~~~~~ 626 (631)
T 3q3e_A 574 -T--VDEYVERAVRLAENHQERLELRRYIIENNGLNTLFTGDPRPMGQVFLEKLNA 626 (631)
T ss_dssp -S--HHHHHHHHHHHHHCHHHHHHHHHHHHHSCCHHHHTCSCCTHHHHHHHHHHHH
T ss_pred -C--HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhCCCcchhHHHHHHHHHHHHHH
Confidence 3 8999999999999999999999998887655333335666777777776654
No 42
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.65 E-value=9e-16 Score=146.97 Aligned_cols=332 Identities=11% Similarity=0.068 Sum_probs=191.7
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhh-hhhccee--eEec----------
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHK-MWDRGVQ--VISA---------- 139 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~---------- 139 (470)
.+.|+++++..-+- -.-+.-+.++|++. +++.++...... .+.+.+. +...++. .+..
T Consensus 8 ~~~~~~~v~GtRpe---~~k~~p~~~~l~~~-~~~~~~~tgqh~-----~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 78 (385)
T 4hwg_A 8 HMLKVMTIVGTRPE---LIKLCCVISEFDKH-TKHILVHTGQNY-----AYELNQVFFDDMGIRKPDYFLEVAADNTAKS 78 (385)
T ss_dssp CCCEEEEEECSHHH---HHHHHHHHHHHHHH-SEEEEEECSCHH-----HHHHTHHHHC-CCCCCCSEECCCCCCCSHHH
T ss_pred hhhheeEEEEcCHh---HHHHHHHHHHHHhc-CCEEEEEeCCCC-----ChhHHHHHHhhCCCCCCceecCCCCCCHHHH
Confidence 35688888732110 13567778888876 887776643221 1112221 1222221 0100
Q ss_pred -----CChhhHHhhcCCcEEEEcccchhhhHH-HHhhhcCCccccceeeEEeeeccc--cchh-hhhcccc-cccceeee
Q 012132 140 -----KGQETINTALKADLIVLNTAVAGKWLD-AVLKEDVPRVLPNVLWWIHEMRGH--YFKL-DYVKHLP-LVAGAMID 209 (470)
Q Consensus 140 -----~~~~~~~~~~~~DiV~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~~~--~~~~-~~~~~~~-~~~~~~~~ 209 (470)
.....+.+..+||+|+++......+.. .+...+ +|++....+.... .+.. ..+.... ..+.+++.
T Consensus 79 ~~~~~~~l~~~l~~~kPD~Vlv~gd~~~~~aalaA~~~~-----IPv~h~eaglrs~~~~~pee~nR~~~~~~a~~~~~~ 153 (385)
T 4hwg_A 79 IGLVIEKVDEVLEKEKPDAVLFYGDTNSCLSAIAAKRRK-----IPIFHMEAGNRCFDQRVPEEINRKIIDHISDVNITL 153 (385)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESCSGGGGGHHHHHHTT-----CCEEEESCCCCCSCTTSTHHHHHHHHHHHCSEEEES
T ss_pred HHHHHHHHHHHHHhcCCcEEEEECCchHHHHHHHHHHhC-----CCEEEEeCCCccccccCcHHHHHHHHHhhhceeecC
Confidence 122455677999999998755433332 222222 3443322222110 0110 1111122 22334555
Q ss_pred ehhhHHHHHHhhhhhhccCCCceEEEecCC-chhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecc---cCCCH
Q 012132 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS---RGKGQ 285 (470)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~---~~Kg~ 285 (470)
+....+.+. +.|++++++.++.|+. |...+... ...+.++++++|++++++++++.||.. ..|++
T Consensus 154 te~~~~~l~-----~~G~~~~~I~vtGnp~~D~~~~~~~------~~~~~~~~~~lgl~~~~~iLvt~hr~e~~~~~~~l 222 (385)
T 4hwg_A 154 TEHARRYLI-----AEGLPAELTFKSGSHMPEVLDRFMP------KILKSDILDKLSLTPKQYFLISSHREENVDVKNNL 222 (385)
T ss_dssp SHHHHHHHH-----HTTCCGGGEEECCCSHHHHHHHHHH------HHHHCCHHHHTTCCTTSEEEEEECCC-----CHHH
T ss_pred CHHHHHHHH-----HcCCCcCcEEEECCchHHHHHHhhh------hcchhHHHHHcCCCcCCEEEEEeCCchhcCcHHHH
Confidence 555544443 5588888999999864 32222111 112456888999987777777777753 34788
Q ss_pred HHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhc-C-C--CCcEEEeccc--CCHHHHHHhcCE
Q 012132 286 DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK-K-I--QDRVHFVNKT--LTVAPYLAAIDV 359 (470)
Q Consensus 286 ~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~-~-l--~~~V~~~g~~--~~~~~~~~~aDv 359 (470)
+.+++|+.++.+ ++ ++.+++... | .+++.++++ + + .++|.+.+.. .++..+|+.||+
T Consensus 223 ~~ll~al~~l~~-------~~-~~~vv~p~~------p---~~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adl 285 (385)
T 4hwg_A 223 KELLNSLQMLIK-------EY-NFLIIFSTH------P---RTKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFC 285 (385)
T ss_dssp HHHHHHHHHHHH-------HH-CCEEEEEEC------H---HHHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHh-------cC-CeEEEEECC------h---HHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcE
Confidence 999999998754 22 566666543 2 134444444 3 2 3689987764 468999999999
Q ss_pred EEEccCCcccccchHHHHHHhcCCCEEecCCC-CcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012132 360 LVQNSQAWGECFGRITIEAMAFQLPVLGTAAG-GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGY 438 (470)
Q Consensus 360 ~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~-g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~ 438 (470)
++.+| |.+..||+++|+|+|+.+.. +.+|.+..| ++.++.. | .+++++++.++++|++.++.|++++.
T Consensus 286 vvt~S-------Ggv~~EA~alG~Pvv~~~~~ter~e~v~~G-~~~lv~~-d--~~~i~~ai~~ll~d~~~~~~m~~~~~ 354 (385)
T 4hwg_A 286 ILSDS-------GTITEEASILNLPALNIREAHERPEGMDAG-TLIMSGF-K--AERVLQAVKTITEEHDNNKRTQGLVP 354 (385)
T ss_dssp EEECC-------TTHHHHHHHTTCCEEECSSSCSCTHHHHHT-CCEECCS-S--HHHHHHHHHHHHTTCBTTBCCSCCCH
T ss_pred EEECC-------ccHHHHHHHcCCCEEEcCCCccchhhhhcC-ceEEcCC-C--HHHHHHHHHHHHhChHHHHHhhccCC
Confidence 99555 44679999999999998653 457777555 6677654 5 89999999999999877766655444
Q ss_pred HHHHHHc-ChhHHHHHHHHHHHHHH
Q 012132 439 ERVKEIF-QEHHMAERIAVVLKEVL 462 (470)
Q Consensus 439 ~~~~~~f-s~~~~~~~~~~~~~~~l 462 (470)
. | .-...++++.+++.+.+
T Consensus 355 ~-----~~g~g~aa~rI~~~l~~~~ 374 (385)
T 4hwg_A 355 D-----YNEAGLVSKKILRIVLSYV 374 (385)
T ss_dssp H-----HHTCCCHHHHHHHHHHHHH
T ss_pred C-----CCCCChHHHHHHHHHHHHh
Confidence 3 3 33334444444444443
No 43
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.61 E-value=2.2e-15 Score=148.18 Aligned_cols=160 Identities=11% Similarity=0.016 Sum_probs=117.1
Q ss_pred CCeEEEEEeeccc-----CCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEE
Q 012132 269 EDLLFAIINSVSR-----GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHF 343 (470)
Q Consensus 269 ~~~~i~~vGrl~~-----~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~ 343 (470)
...++++.|++.. .|.+..++++++. .++++++++++.. .+.++ +++++|.+
T Consensus 267 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~------------~~~~~v~~~g~~~-----~~~l~------~~~~~v~~ 323 (441)
T 2yjn_A 267 RRRVCLTLGISSRENSIGQVSIEELLGAVGD------------VDAEIIATFDAQQ-----LEGVA------NIPDNVRT 323 (441)
T ss_dssp SCEEEEEC----------CCSTTTTHHHHHT------------SSSEEEECCCTTT-----TSSCS------SCCSSEEE
T ss_pred CCEEEEECCCCcccccChHHHHHHHHHHHHc------------CCCEEEEEECCcc-----hhhhc------cCCCCEEE
Confidence 3567888899865 4888888888853 3578888776521 11111 35679999
Q ss_pred ecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHH
Q 012132 344 VNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKN 419 (470)
Q Consensus 344 ~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~ 419 (470)
.|+..+ .++|..||++|.. +.+.++.|||++|+|+|+....+ ..+.+.+.+.|++++..+.++++|+++
T Consensus 324 ~~~~~~-~~ll~~ad~~V~~------~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~ 396 (441)
T 2yjn_A 324 VGFVPM-HALLPTCAATVHH------GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRES 396 (441)
T ss_dssp CCSCCH-HHHGGGCSEEEEC------CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTTCCHHHHHHH
T ss_pred ecCCCH-HHHHhhCCEEEEC------CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEcccccCCHHHHHHH
Confidence 999865 7889999999943 34679999999999999998743 455666777899988764448999999
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Q 012132 420 IVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 420 i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 459 (470)
|.++++|++.++++++.+++.. +..+.+.+++.+++++.
T Consensus 397 i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 397 VKRVLDDPAHRAGAARMRDDML-AEPSPAEVVGICEELAA 435 (441)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence 9999999999998888777654 44777777777766653
No 44
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.54 E-value=7.5e-13 Score=129.42 Aligned_cols=161 Identities=14% Similarity=0.129 Sum_probs=108.2
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEE-EEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc
Q 012132 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAV-IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (470)
Q Consensus 269 ~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~-ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~ 347 (470)
...++++.|+.. .+..+.+.+++..+. ..+++++ ++|.+.. .+.++ .++++|.+.++.
T Consensus 255 ~~~v~v~~Gs~~-~~~~~~~~~~~~al~---------~~~~~~~~~~g~~~~-----~~~~~------~~~~~v~~~~~~ 313 (424)
T 2iya_A 255 RPVLLIALGSAF-TDHLDFYRTCLSAVD---------GLDWHVVLSVGRFVD-----PADLG------EVPPNVEVHQWV 313 (424)
T ss_dssp CCEEEEECCSSS-CCCHHHHHHHHHHHT---------TCSSEEEEECCTTSC-----GGGGC------SCCTTEEEESSC
T ss_pred CCEEEEEcCCCC-cchHHHHHHHHHHHh---------cCCcEEEEEECCcCC-----hHHhc------cCCCCeEEecCC
Confidence 456777889876 334344433333331 1456774 5676521 11111 246789999998
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHHHHH
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 423 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~l 423 (470)
.+. ++|+.+|++|..+ -.++++|||++|+|+|+....+ ..+.+.+.+.|+.++..+.+.++++++|.++
T Consensus 314 ~~~-~~l~~~d~~v~~~------G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l 386 (424)
T 2iya_A 314 PQL-DILTKASAFITHA------GMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAV 386 (424)
T ss_dssp CHH-HHHTTCSEEEECC------CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHHH
T ss_pred CHH-HHHhhCCEEEECC------chhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHH
Confidence 776 8999999998433 3579999999999999997643 3444556678888876533489999999999
Q ss_pred HhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Q 012132 424 ATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 458 (470)
++|++.++++++.+++.. +....+++++.+++++
T Consensus 387 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 420 (424)
T 2iya_A 387 ASDPGVAERLAAVRQEIR-EAGGARAAADILEGIL 420 (424)
T ss_dssp HHCHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHH
Confidence 999988888777665533 3345556665555543
No 45
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.50 E-value=4.3e-13 Score=130.10 Aligned_cols=157 Identities=9% Similarity=0.002 Sum_probs=105.9
Q ss_pred CCCeEEEEEeecc-cCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc
Q 012132 268 NEDLLFAIINSVS-RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (470)
Q Consensus 268 ~~~~~i~~vGrl~-~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~ 346 (470)
..+.++++.|++. ..+.++.+++++.++ ++++++.++..... ..+..++|.+.++
T Consensus 220 ~~~~Vlv~~Gs~~~~~~~~~~~~~al~~~------------~~~vv~~~g~~~~~------------~~~~~~~v~~~~~ 275 (404)
T 3h4t_A 220 GSPPVYVGFGSGPAPAEAARVAIEAVRAQ------------GRRVVLSSGWAGLG------------RIDEGDDCLVVGE 275 (404)
T ss_dssp SSCCEEECCTTSCCCTTHHHHHHHHHHHT------------TCCEEEECTTTTCC------------CSSCCTTEEEESS
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHHHhC------------CCEEEEEeCCcccc------------cccCCCCEEEecC
Confidence 3457777889887 566677777776543 46677765532110 1234679999999
Q ss_pred cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHHHH
Q 012132 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVK 422 (470)
Q Consensus 347 ~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ 422 (470)
.+ ...++..+|++|..+ -..++.|||++|+|+|+...++ ..+.+.+.+.|...+..+.+.+++.+++.+
T Consensus 276 ~~-~~~ll~~~d~~v~~g------G~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ 348 (404)
T 3h4t_A 276 VN-HQVLFGRVAAVVHHG------GAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALAT 348 (404)
T ss_dssp CC-HHHHGGGSSEEEECC------CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHH
T ss_pred CC-HHHHHhhCcEEEECC------cHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCCHHHHHHHHHH
Confidence 75 488999999999444 3478999999999999986554 233355556788877654458999999999
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Q 012132 423 LATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 423 ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 458 (470)
+++ ++.++++.+.+.+.. + -..+.+++.+++++
T Consensus 349 ll~-~~~~~~~~~~~~~~~-~-~~~~~~~~~i~~~~ 381 (404)
T 3h4t_A 349 ALT-PGIRARAAAVAGTIR-T-DGTTVAAKLLLEAI 381 (404)
T ss_dssp HTS-HHHHHHHHHHHTTCC-C-CHHHHHHHHHHHHH
T ss_pred HhC-HHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHH
Confidence 998 877766655544322 1 24444444444443
No 46
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=99.48 E-value=1.6e-12 Score=130.79 Aligned_cols=249 Identities=13% Similarity=0.044 Sum_probs=163.9
Q ss_pred eeeeehhhHHHHHHh-hhhhhccCCCceEEEecCCchhhh----hHhhhH------------------------------
Q 012132 206 AMIDSHVTAEYWKNR-TRERLRIKMPDTYVVHLGNSKELM----EVAEDN------------------------------ 250 (470)
Q Consensus 206 ~~~~s~~~~~~~~~~-~~~~~~~~~~~i~vi~ngvd~~~~----~~~~~~------------------------------ 250 (470)
+-.+|...++..+.. +...+..-+.++.-|-|||+...+ .|..+.
T Consensus 417 VNgVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~w~~d~~~l~~l~~~~~d~~~~ 496 (796)
T 1l5w_A 417 VNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFR 496 (796)
T ss_dssp EEESSHHHHHHHHHTTSHHHHHHCGGGEEECCCCBCHHHHTTTTCHHHHHHHHHHCSSCCTTCGGGGGGGGGGGGCHHHH
T ss_pred cccccHHHHHHHHhHHhhHHHHhCccccCCCcCCCcHHHhhcccCHhHHHHHHHhcCcccccCHHHHHHHHhcCCCHHHH
Confidence 334455555554432 112233455679999999998777 232110
Q ss_pred ----HHHHHHHHH----HHHHcCCC--CCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhcccCCceEEEEEeCCCC
Q 012132 251 ----VAKRVLREH----VRESLGVR--NEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMN 319 (470)
Q Consensus 251 ----~~~~~~~~~----~r~~~~~~--~~~~~i~~vGrl~~~Kg~~~-ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~ 319 (470)
..+...+.. +++++|++ ++.+.++++.|+..+||+++ ++..+.++.+...+......++++++.|.+.+
T Consensus 497 ~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P 576 (796)
T 1l5w_A 497 QQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAP 576 (796)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCCh
Confidence 112222344 47777875 56799999999999999999 89998887654333211123589999999876
Q ss_pred cChHHHHHHHHHHHhc--------CCCC--cEEEec-ccCC-HHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEe
Q 012132 320 AQTKFESELRNYVMQK--------KIQD--RVHFVN-KTLT-VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG 387 (470)
Q Consensus 320 ~~~~~~~~l~~~~~~~--------~l~~--~V~~~g-~~~~-~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~ 387 (470)
... ....+.+++.+. ..++ +|.|+. +... -..++++||++++||+...|++|+.-+-||..|.+.|+
T Consensus 577 ~y~-~aK~iIk~i~~va~~in~Dp~~~~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iG 655 (796)
T 1l5w_A 577 GYY-LAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVG 655 (796)
T ss_dssp TCH-HHHHHHHHHHHHHHHHHTCTTTGGGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEE
T ss_pred hHH-HHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeec
Confidence 543 233333333222 3556 788775 4444 45568999999999997789999999999999999999
Q ss_pred cCCCCcceeeec--CceeeeecCCCCChHHHHHH-------HHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Q 012132 388 TAAGGTTEIVVN--GTTGLLHPVGKEGITPLAKN-------IVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 388 s~~~g~~e~v~~--~~~G~l~~~~d~~~~~la~~-------i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 458 (470)
+--|...|+.++ .+||++|.. + ++++.+. ..-.-.+++ ++++-+++. ...|||+.. .+|.++|
T Consensus 656 tLDGanvEi~e~vG~~NgF~FG~-~--~~ev~~l~~~~y~a~~~y~~~~~-~~~vvd~~~---~g~fs~~~~-~~y~~Ly 727 (796)
T 1l5w_A 656 TLDGANVEIAEKVGEENIFIFGH-T--VEQVKAILAKGYDPVKWRKKDKV-LDAVLKELE---SGKYSDGDK-HAFDQML 727 (796)
T ss_dssp CSCTTHHHHHHHHCGGGSEECSC-C--HHHHHHHHHHCCCHHHHHHHCHH-HHHHHHHHH---HTTTTTTCT-TTTHHHH
T ss_pred CcCCeeeehhhccCCCcEEEecC-C--HHHHHHHHHcccCHHHHhhcCHH-HHHHHHHHH---cCCCCCCcH-HHHHHHH
Confidence 988888777544 469999987 4 6666532 222223553 444434333 367999875 7799999
Q ss_pred HHHHH
Q 012132 459 KEVLK 463 (470)
Q Consensus 459 ~~~l~ 463 (470)
+.++.
T Consensus 728 ~~L~~ 732 (796)
T 1l5w_A 728 HSIGK 732 (796)
T ss_dssp HHTST
T ss_pred HHHhc
Confidence 88754
No 47
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=99.46 E-value=1.8e-12 Score=130.54 Aligned_cols=252 Identities=14% Similarity=0.085 Sum_probs=163.8
Q ss_pred eeeeehhhHHHHHHh-hhhhhccCCCceEEEecCCchhhh----hHhh----------------------------h---
Q 012132 206 AMIDSHVTAEYWKNR-TRERLRIKMPDTYVVHLGNSKELM----EVAE----------------------------D--- 249 (470)
Q Consensus 206 ~~~~s~~~~~~~~~~-~~~~~~~~~~~i~vi~ngvd~~~~----~~~~----------------------------~--- 249 (470)
+-.+|...++..+.. +...+..-+.++.-|-|||+...+ .|.. +
T Consensus 406 VNgVS~lHae~ik~~~f~~~~~~~p~kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l~~l~~~~~d~~~ 485 (796)
T 2c4m_A 406 INGVAALHTEIIKAETLADWYALWPEKFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDELKKLRSYADDKSV 485 (796)
T ss_dssp EEESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGGGGGGGGGGCHHH
T ss_pred eeeccHHHHHHhhhhhhhhHHHcCccccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHHHHHHHhhCCCHHH
Confidence 444555555555532 122234456779999999987766 2221 1
Q ss_pred ----HHHHHHHHHH----HHHHcCCC--CCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhcccCCceEEEEEeCCC
Q 012132 250 ----NVAKRVLREH----VRESLGVR--NEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDM 318 (470)
Q Consensus 250 ----~~~~~~~~~~----~r~~~~~~--~~~~~i~~vGrl~~~Kg~~~-ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~ 318 (470)
...+...+.+ +++++|++ ++.+.++++.|+..+||+++ ++..+.++.+...+.......+++++.|.+.
T Consensus 486 ~~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~ 565 (796)
T 2c4m_A 486 LEELRAIKAANKQDFAEWILERQGIEIDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAA 565 (796)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCC
Confidence 0122222344 47777764 56799999999999999999 8999887764332211111358999999987
Q ss_pred CcChHHHHHHHHHHHhc--------CCCC--cEEEec-ccCC-HHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEE
Q 012132 319 NAQTKFESELRNYVMQK--------KIQD--RVHFVN-KTLT-VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (470)
Q Consensus 319 ~~~~~~~~~l~~~~~~~--------~l~~--~V~~~g-~~~~-~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (470)
+... ....+.+++.+. ..++ +|.|+. +... -..++++||++++||+...|++|+.-+-+|..|.+.|
T Consensus 566 P~y~-~aK~iIk~i~~va~~in~dp~~~~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~i 644 (796)
T 2c4m_A 566 PGYV-RAKAIIKLINSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTL 644 (796)
T ss_dssp TTCH-HHHHHHHHHHHHHHHHHTCTTTTTTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEE
T ss_pred HhHH-HHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEE
Confidence 6543 232333333222 3566 788775 4444 4556899999999999778999999999999999999
Q ss_pred ecCCCCcceeeec--CceeeeecCCCCChHHHHHH---HHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH
Q 012132 387 GTAAGGTTEIVVN--GTTGLLHPVGKEGITPLAKN---IVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 461 (470)
Q Consensus 387 ~s~~~g~~e~v~~--~~~G~l~~~~d~~~~~la~~---i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 461 (470)
++--|...|+.++ .+||++|....+++.++..+ ..-.-.+++ ++++-+++. ...|||+.- .+|.++|+.+
T Consensus 645 GtLDGanvEi~e~vG~~NgF~FG~~~~ev~~l~~~y~a~~~y~~~~~-~~~vvd~~~---~g~fs~~~~-~~y~~Ly~~L 719 (796)
T 2c4m_A 645 GTMDGANVEIVDSVGEENAYIFGARVEELPALRESYKPYELYETVPG-LKRALDALD---NGTLNDNNS-GLFYDLKHSL 719 (796)
T ss_dssp EESSTHHHHHHHHHCGGGSEEESCCTTTHHHHHHTCCHHHHHHHSTT-HHHHHHTTT---SSSSCCTTC-CHHHHHHHHH
T ss_pred eccCCeEeehhhhcCCCcEEEecCchhhHHHHHHhhChHHHhhcCHH-HHHHHHHHH---cCCCCCCCH-HHHHHHHHHH
Confidence 9988877777543 46999998743336666543 222223443 333333322 256999876 7799999998
Q ss_pred HH
Q 012132 462 LK 463 (470)
Q Consensus 462 l~ 463 (470)
+.
T Consensus 720 ~~ 721 (796)
T 2c4m_A 720 IH 721 (796)
T ss_dssp HS
T ss_pred Hh
Confidence 74
No 48
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.46 E-value=1.4e-12 Score=126.53 Aligned_cols=156 Identities=13% Similarity=0.120 Sum_probs=98.3
Q ss_pred CCeEEEEEeecccCCC-HHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc
Q 012132 269 EDLLFAIINSVSRGKG-QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (470)
Q Consensus 269 ~~~~i~~vGrl~~~Kg-~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~ 347 (470)
...++++.|++...++ .+.+.+++..+.+ .+..+++.+.+.+.. ....+++++.+.++.
T Consensus 237 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~---------~~~~~v~~~~~~~~~-----------~~~~~~~~v~~~~~~ 296 (400)
T 4amg_A 237 RRRIAVTLGSIDALSGGIAKLAPLFSEVAD---------VDAEFVLTLGGGDLA-----------LLGELPANVRVVEWI 296 (400)
T ss_dssp CCEEEECCCSCC--CCSSSTTHHHHHHGGG---------SSSEEEEECCTTCCC-----------CCCCCCTTEEEECCC
T ss_pred CcEEEEeCCcccccCccHHHHHHHHHHhhc---------cCceEEEEecCcccc-----------ccccCCCCEEEEeec
Confidence 4466777788765443 3444444433311 456777666542211 112456899999987
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHHHHH
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 423 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~l 423 (470)
...++|..+|+|| ..+..+++.|||++|+|+|+....+ ..+.+.+.+.|...+.. +..+++|.++
T Consensus 297 -p~~~lL~~~~~~v------~h~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l~~~----~~~~~al~~l 365 (400)
T 4amg_A 297 -PLGALLETCDAII------HHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDAEAG----SLGAEQCRRL 365 (400)
T ss_dssp -CHHHHHTTCSEEE------ECCCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEECCTT----TCSHHHHHHH
T ss_pred -CHHHHhhhhhhee------ccCCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEcCCC----CchHHHHHHH
Confidence 4678899999998 3445679999999999999976543 34445555567776654 4567899999
Q ss_pred HhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Q 012132 424 ATHVERRLTMGKRGYERVKEIFQEHHMAERIAV 456 (470)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~ 456 (470)
++|++.+++..+.+++ +...=+....++.+++
T Consensus 366 L~d~~~r~~a~~l~~~-~~~~~~~~~~a~~le~ 397 (400)
T 4amg_A 366 LDDAGLREAALRVRQE-MSEMPPPAETAAXLVA 397 (400)
T ss_dssp HHCHHHHHHHHHHHHH-HHTSCCHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHH-HHcCCCHHHHHHHHHH
Confidence 9999877766554444 3333455566655554
No 49
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.41 E-value=2.7e-11 Score=117.99 Aligned_cols=157 Identities=8% Similarity=0.015 Sum_probs=108.9
Q ss_pred CCeEEEEEeec-ccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEE-eCCCCcChHHHHHHHHHHHhcCCCCcEEEecc
Q 012132 269 EDLLFAIINSV-SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (470)
Q Consensus 269 ~~~~i~~vGrl-~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~iv-G~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~ 346 (470)
...++++.|++ .+.+..+.++++++++ +.+++++ |.+... ...++++|.+.++
T Consensus 238 ~~~v~v~~Gs~~~~~~~~~~~~~al~~~------------~~~~v~~~g~~~~~-------------~~~~~~~v~~~~~ 292 (415)
T 1iir_A 238 PPPVYLGFGSLGAPADAVRVAIDAIRAH------------GRRVILSRGWADLV-------------LPDDGADCFAIGE 292 (415)
T ss_dssp SCCEEEECC---CCHHHHHHHHHHHHHT------------TCCEEECTTCTTCC-------------CSSCGGGEEECSS
T ss_pred CCeEEEeCCCCCCcHHHHHHHHHHHHHC------------CCeEEEEeCCCccc-------------ccCCCCCEEEeCc
Confidence 35677888998 4777777888887653 2455554 655210 0234578999999
Q ss_pred cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHHHH
Q 012132 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVK 422 (470)
Q Consensus 347 ~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ 422 (470)
..+ .++|..+|++|..+ -.++++|||++|+|+|+....+ ..+.+.+.+.|+.++..+.+.++++++|.+
T Consensus 293 ~~~-~~~l~~~d~~v~~~------G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ 365 (415)
T 1iir_A 293 VNH-QVLFGRVAAVIHHG------GAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALAT 365 (415)
T ss_dssp CCH-HHHGGGSSEEEECC------CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHH
T ss_pred CCh-HHHHhhCCEEEeCC------ChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccCCcCCCCHHHHHHHHHH
Confidence 865 57889999999543 2479999999999999987654 445566667888887654458999999999
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH
Q 012132 423 LATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 463 (470)
Q Consensus 423 ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~ 463 (470)
+ +|++.++++.+.+++ +....-+++..+.+++++.
T Consensus 366 l-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~ 400 (415)
T 1iir_A 366 A-LTPETHARATAVAGT-----IRTDGAAVAARLLLDAVSR 400 (415)
T ss_dssp H-TSHHHHHHHHHHHHH-----SCSCHHHHHHHHHHHHHHT
T ss_pred H-cCHHHHHHHHHHHHH-----HhhcChHHHHHHHHHHHHh
Confidence 9 998877766554443 4445555666666666654
No 50
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.33 E-value=3.1e-12 Score=108.11 Aligned_cols=133 Identities=6% Similarity=0.040 Sum_probs=99.2
Q ss_pred CCCeEEEEEeecc---cCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEe
Q 012132 268 NEDLLFAIINSVS---RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFV 344 (470)
Q Consensus 268 ~~~~~i~~vGrl~---~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~ 344 (470)
+...+++++|++. +.|++..+++++.++ +.++++++++... -.++++|++.
T Consensus 20 ~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~------------~~~~~~~~g~~~~--------------~~~~~~v~~~ 73 (170)
T 2o6l_A 20 ENGVVVFSLGSMVSNMTEERANVIASALAQI------------PQKVLWRFDGNKP--------------DTLGLNTRLY 73 (170)
T ss_dssp TTCEEEEECCSCCTTCCHHHHHHHHHHHTTS------------SSEEEEECCSSCC--------------TTCCTTEEEE
T ss_pred CCCEEEEECCCCcccCCHHHHHHHHHHHHhC------------CCeEEEEECCcCc--------------ccCCCcEEEe
Confidence 3467888899985 566777777777532 3677777765311 0345789999
Q ss_pred cccCCHHHHH--HhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHH
Q 012132 345 NKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAK 418 (470)
Q Consensus 345 g~~~~~~~~~--~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~ 418 (470)
|+.++ ..++ +.||++|..+ .+.+++|||++|+|+|+....+ ..+.+.+.+.|++++..+.+.++|++
T Consensus 74 ~~~~~-~~~l~~~~ad~~I~~~------G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~ 146 (170)
T 2o6l_A 74 KWIPQ-NDLLGHPKTRAFITHG------GANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLN 146 (170)
T ss_dssp SSCCH-HHHHTSTTEEEEEECC------CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHH
T ss_pred cCCCH-HHHhcCCCcCEEEEcC------CccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHH
Confidence 99755 5666 8999999543 3689999999999999998642 45566677889999877444899999
Q ss_pred HHHHHHhCHHHHHHH
Q 012132 419 NIVKLATHVERRLTM 433 (470)
Q Consensus 419 ~i~~ll~~~~~~~~~ 433 (470)
+|.++++|++.++++
T Consensus 147 ~i~~ll~~~~~~~~a 161 (170)
T 2o6l_A 147 ALKRVINDPSYKENV 161 (170)
T ss_dssp HHHHHHHCHHHHHHH
T ss_pred HHHHHHcCHHHHHHH
Confidence 999999998754444
No 51
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.33 E-value=1e-10 Score=113.95 Aligned_cols=138 Identities=10% Similarity=0.041 Sum_probs=97.1
Q ss_pred CCeEEEEEeecc---cCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEE-eCCCCcChHHHHHHHHHHHhcCCCCcEEEe
Q 012132 269 EDLLFAIINSVS---RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFV 344 (470)
Q Consensus 269 ~~~~i~~vGrl~---~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~iv-G~g~~~~~~~~~~l~~~~~~~~l~~~V~~~ 344 (470)
+..++++.|++. ..+.++.++++++.+ +.+++++ |.+.. + . ..+++++.+.
T Consensus 237 ~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~------------~~~~v~~~g~~~~------~-~------~~~~~~v~~~ 291 (416)
T 1rrv_A 237 SPPVHIGFGSSSGRGIADAAKVAVEAIRAQ------------GRRVILSRGWTEL------V-L------PDDRDDCFAI 291 (416)
T ss_dssp SCCEEECCTTCCSHHHHHHHHHHHHHHHHT------------TCCEEEECTTTTC------C-C------SCCCTTEEEE
T ss_pred CCeEEEecCCCCccChHHHHHHHHHHHHHC------------CCeEEEEeCCccc------c-c------cCCCCCEEEe
Confidence 356777788874 355566666666532 3556665 65421 0 0 2356789999
Q ss_pred cccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHH
Q 012132 345 NKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNI 420 (470)
Q Consensus 345 g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i 420 (470)
++.. ..++|..||++|.. +-..++.|||++|+|+|+....+ ..+.+.+.+.|..++..+.+.++++++|
T Consensus 292 ~~~~-~~~ll~~~d~~v~~------~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i 364 (416)
T 1rrv_A 292 DEVN-FQALFRRVAAVIHH------GSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAAL 364 (416)
T ss_dssp SSCC-HHHHGGGSSEEEEC------CCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHH
T ss_pred ccCC-hHHHhccCCEEEec------CChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCCCHHHHHHHH
Confidence 9975 67899999999943 33579999999999999986543 3444556678888876444489999999
Q ss_pred HHHHhCHHHHHHHHHHHHH
Q 012132 421 VKLATHVERRLTMGKRGYE 439 (470)
Q Consensus 421 ~~ll~~~~~~~~~~~~a~~ 439 (470)
.++ +|++.++++++.+++
T Consensus 365 ~~l-~~~~~~~~~~~~~~~ 382 (416)
T 1rrv_A 365 TTV-LAPETRARAEAVAGM 382 (416)
T ss_dssp HHH-TSHHHHHHHHHHTTT
T ss_pred HHh-hCHHHHHHHHHHHHH
Confidence 999 998877776655443
No 52
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.31 E-value=4.9e-10 Score=115.83 Aligned_cols=184 Identities=13% Similarity=0.154 Sum_probs=140.6
Q ss_pred HHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCC-CC
Q 012132 261 RESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI-QD 339 (470)
Q Consensus 261 r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l-~~ 339 (470)
|..+|++++.++++.+.++ .|=.+.+++++.++++ +.|+.+|++..... .....+++.+++.|+ .+
T Consensus 514 R~~~gLp~~~v~f~~fN~~--~Ki~p~~~~~W~~IL~-------~vP~S~L~Ll~~~~----~~~~~l~~~~~~~gi~~~ 580 (723)
T 4gyw_A 514 RSQYGLPEDAIVYCNFNQL--YKIDPSTLQMWANILK-------RVPNSVLWLLRFPA----VGEPNIQQYAQNMGLPQN 580 (723)
T ss_dssp GGGGTCCTTSEEEECCSCG--GGCCHHHHHHHHHHHH-------HCSSEEEEEEETTG----GGHHHHHHHHHHTTCCGG
T ss_pred hhhcCCCCCCEEEEeCCcc--ccCCHHHHHHHHHHHH-------hCCCCeEEEEeCcH----HHHHHHHHHHHhcCCCcC
Confidence 6778999998888777654 5667889999998877 56999999988653 246778888999888 47
Q ss_pred cEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcce-----eeec-CceeeeecCCCC
Q 012132 340 RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTE-----IVVN-GTTGLLHPVGKE 411 (470)
Q Consensus 340 ~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e-----~v~~-~~~G~l~~~~d~ 411 (470)
+|.|.+.. .+-...|+.+|+++=|.- -+-+.+..||+.+|+|||+-....... ++.. |-.-+++. +
T Consensus 581 r~~f~~~~~~~~~l~~~~~~Di~LDt~p---~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia~--~- 654 (723)
T 4gyw_A 581 RIIFSPVAPKEEHVRRGQLADVCLDTPL---CNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAK--N- 654 (723)
T ss_dssp GEEEEECCCHHHHHHHGGGCSEEECCSS---SCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBCS--S-
T ss_pred eEEECCCCCHHHHHHHhCCCeEEeCCCC---cCCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccccC--C-
Confidence 89999975 556677899999997764 456899999999999999864222111 1111 11122322 3
Q ss_pred ChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--HcChhHHHHHHHHHHHHHHHh
Q 012132 412 GITPLAKNIVKLATHVERRLTMGKRGYERVKE--IFQEHHMAERIAVVLKEVLKK 464 (470)
Q Consensus 412 ~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~--~fs~~~~~~~~~~~~~~~l~~ 464 (470)
.++..+...++.+|++.+..+.+.-++.... .|+....++.+++.|+++.+.
T Consensus 655 -~~~Y~~~a~~la~d~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~w~r 708 (723)
T 4gyw_A 655 -RQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEH 708 (723)
T ss_dssp -HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999998888777655 589999999999999998764
No 53
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=99.29 E-value=8.7e-11 Score=118.82 Aligned_cols=250 Identities=13% Similarity=0.086 Sum_probs=161.2
Q ss_pred ceeeeehhhHHHHHHh-hhhhhccCCCceEEEecCCchhhh----hHhhh----------------------------HH
Q 012132 205 GAMIDSHVTAEYWKNR-TRERLRIKMPDTYVVHLGNSKELM----EVAED----------------------------NV 251 (470)
Q Consensus 205 ~~~~~s~~~~~~~~~~-~~~~~~~~~~~i~vi~ngvd~~~~----~~~~~----------------------------~~ 251 (470)
.+-.+|...++..+.. +...+...+.++.-|-|||+...+ .|.-+ ..
T Consensus 440 ~VNgVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~lI~~~ig~~W~~~~~~l~~L~~y~~d~~~ 519 (824)
T 2gj4_A 440 AVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLRKLLSYVDDEAF 519 (824)
T ss_dssp CEEESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCCTCHHHHHHHHHHHCSGGGGCGGGGGGGGGGTTCHHH
T ss_pred ceeeEcHHHHHHHhhHHhHHHHHcChhhcccccCCcChhhhcccCCHhHHHHHHHhcCchhhhCHHHHHHHHhccchHHH
Confidence 3444555555555432 222234456789999999977665 22211 01
Q ss_pred ------HHHHHHHH----HHHHcCCC--CCCeEEEEEeecccCCCHHHH-HHHHHHHHHHHHhhcccCCceEEEEEeCCC
Q 012132 252 ------AKRVLREH----VRESLGVR--NEDLLFAIINSVSRGKGQDLF-LHSFYESLELIKEKKLEVPSVHAVIIGSDM 318 (470)
Q Consensus 252 ------~~~~~~~~----~r~~~~~~--~~~~~i~~vGrl~~~Kg~~~l-l~a~~~l~~~l~~~~~~~~~~~l~ivG~g~ 318 (470)
.+...+.. ++++.|++ ++.+.++++.|+..+||++++ +..+.++.+...+......+.++++.|.+.
T Consensus 520 ~~~~~~~K~~nK~~la~~l~~~~Gl~vdpd~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~If~GKA~ 599 (824)
T 2gj4_A 520 IRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAA 599 (824)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEEEEEEeCC
Confidence 11122233 56667765 567999999999999999998 888887754333211111257999999987
Q ss_pred CcChHHHHH----HHHHHHhc----CCCC--cEEEec-ccCCH-HHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEE
Q 012132 319 NAQTKFESE----LRNYVMQK----KIQD--RVHFVN-KTLTV-APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (470)
Q Consensus 319 ~~~~~~~~~----l~~~~~~~----~l~~--~V~~~g-~~~~~-~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (470)
+... .... +.++++.. .+++ +|.|+. +...+ ..++++||++++||+...|++|+.-+=||..|.+.|
T Consensus 600 P~y~-~aK~iIkli~~va~~in~Dp~v~~~lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLti 678 (824)
T 2gj4_A 600 PGYH-MAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTI 678 (824)
T ss_dssp TTCH-HHHHHHHHHHHHHHHHTTCTTTGGGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEE
T ss_pred HhHH-HHHHHHHHHHHHHHHhccCcccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEE
Confidence 6543 2222 44444432 2345 688775 44444 556899999999999778999999999999999999
Q ss_pred ecCCCCcceeee--cCceeeeecCCCCChHHHHHHHH-------HHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Q 012132 387 GTAAGGTTEIVV--NGTTGLLHPVGKEGITPLAKNIV-------KLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVV 457 (470)
Q Consensus 387 ~s~~~g~~e~v~--~~~~G~l~~~~d~~~~~la~~i~-------~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~ 457 (470)
++--|...|+.+ ..+||++|... ++++ .++. .+.++.+.++++-++. +...|+|..- .+|.++
T Consensus 679 gtlDGanvEi~e~vG~~Ngf~FG~~---~~ev-~~l~~~~~~a~~~Y~~~~~l~~v~d~i---~~g~fs~~~~-~~y~~l 750 (824)
T 2gj4_A 679 GTMDGANVEMAEEAGEENFFIFGMR---VEDV-DRLDQRGYNAQEYYDRIPELRQIIEQL---SSGFFSPKQP-DLFKDI 750 (824)
T ss_dssp ECSCTTHHHHHHHHCGGGSEECSCC---HHHH-HHHHHHCCCHHHHHHHCHHHHHHHHHH---HHTTTCTTST-TTTHHH
T ss_pred EEecCccchhhhccCCCCEEEeCCc---HHHH-HHHHHcCCCHHHHhcCCHHHHHHHHHH---HhCCCCCCCh-HHHHHH
Confidence 998787777653 45789999865 4555 3331 2233222233333333 3466999887 779999
Q ss_pred HHHHHH
Q 012132 458 LKEVLK 463 (470)
Q Consensus 458 ~~~~l~ 463 (470)
|++++.
T Consensus 751 y~~l~~ 756 (824)
T 2gj4_A 751 VNMLMH 756 (824)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 999874
No 54
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=98.68 E-value=9.5e-07 Score=79.96 Aligned_cols=241 Identities=10% Similarity=0.016 Sum_probs=127.4
Q ss_pred cEEEEEeeccCC-Cch-hHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC--Ch---hhHHh
Q 012132 75 KLVLLVSHELSL-SGG-PLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--GQ---ETINT 147 (470)
Q Consensus 75 ~kIl~v~~~~~~-~G~-~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~ 147 (470)
|||+|.+...+- |.| -.+...||++|+ +|.+++...+.. .....|+.+.... .. ....+
T Consensus 1 mki~ir~Da~~~IG~GHvmRcl~LA~~l~----~v~F~~~~~~~~----------~~~~~g~~v~~l~~~d~~~~~~~l~ 66 (282)
T 3hbm_A 1 MKVLFRSDSSSQIGFGHIKRDLVLAKQYS----DVSFACLPLEGS----------LIDEIPYPVYELSSESIYELINLIK 66 (282)
T ss_dssp CCEEEEECCBTTTBSHHHHHHHHHHTTCS----SEEEEECCCTTC----------CGGGCCSCEEECSSSCHHHHHHHHH
T ss_pred CEEEEEEecCCCccccHHHHHHHHHHHHH----hCEEEEecCcHh----------HHHHCCCeEEEcCccCHHHHHHHHH
Confidence 689999987665 434 366777788877 788888543321 1112366665543 22 23445
Q ss_pred hcCCcEEEEcccch-hhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhhc
Q 012132 148 ALKADLIVLNTAVA-GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLR 226 (470)
Q Consensus 148 ~~~~DiV~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 226 (470)
..++|+|++-+... ..|...+..... .++ ..+-+.. . .. ..+-++........ . .|.
T Consensus 67 ~~~~d~lIvD~Y~~~~~~~~~lk~~~~----~~i-~~iDD~~-~-------~~--~~Dllin~~~~~~~---~----~Y~ 124 (282)
T 3hbm_A 67 EEKFELLIIDHYGISVDDEKLIKLETG----VKI-LSFDDEI-K-------PH--HCDILLNVNAYAKA---S----DYE 124 (282)
T ss_dssp HHTCSEEEEECTTCCHHHHHHHHHHHC----CEE-EEECSSC-C-------CC--CCSEEEECSTTCCG---G----GGT
T ss_pred hCCCCEEEEECCCCCHHHHHHHHHhcC----cEE-EEEecCC-C-------cc--cCCEEEeCCcccch---h----hcc
Confidence 57999999866443 333333222111 122 2233321 1 00 12333332222110 0 221
Q ss_pred --cCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcc
Q 012132 227 --IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKL 304 (470)
Q Consensus 227 --~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~ 304 (470)
++.. ..+ .-|.+.....+.... .+++ .-...+.++++.|...+..-...+++++..
T Consensus 125 ~~~p~~-~~~-l~G~~Y~~lR~eF~~---------~~~~-~r~~~~~ILv~~GG~d~~~l~~~vl~~L~~---------- 182 (282)
T 3hbm_A 125 GLVPFK-CEV-RCGFSYALIREEFYQ---------EAKE-NRKKKYDFFICMGGTDIKNLSLQIASELPK---------- 182 (282)
T ss_dssp TTCC-C-CEE-EESGGGCCCCHHHHH---------HTTC-CCCCCEEEEEECCSCCTTCHHHHHHHHSCT----------
T ss_pred ccCCCC-CeE-eeCCcccccCHHHHH---------hhhh-ccccCCeEEEEECCCchhhHHHHHHHHhhc----------
Confidence 1222 222 235433322211100 0001 111233566677765544323344444321
Q ss_pred cCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCC
Q 012132 305 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (470)
Q Consensus 305 ~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (470)
..+ -.+|.|.+. +..+++++..++. .++.+.++.+++.++|+.||++|.+ .|.++.|++++|+|
T Consensus 183 -~~~-i~vv~G~~~----~~~~~l~~~~~~~---~~v~v~~~~~~m~~~m~~aDlvI~~-------gG~T~~E~~~~g~P 246 (282)
T 3hbm_A 183 -TKI-ISIATSSSN----PNLKKLQKFAKLH---NNIRLFIDHENIAKLMNESNKLIIS-------ASSLVNEALLLKAN 246 (282)
T ss_dssp -TSC-EEEEECTTC----TTHHHHHHHHHTC---SSEEEEESCSCHHHHHHTEEEEEEE-------SSHHHHHHHHTTCC
T ss_pred -CCC-EEEEECCCc----hHHHHHHHHHhhC---CCEEEEeCHHHHHHHHHHCCEEEEC-------CcHHHHHHHHcCCC
Confidence 123 446678774 3567777766643 3799999999999999999999963 26899999999999
Q ss_pred EEecC
Q 012132 385 VLGTA 389 (470)
Q Consensus 385 vI~s~ 389 (470)
.|.-.
T Consensus 247 ~i~ip 251 (282)
T 3hbm_A 247 FKAIC 251 (282)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99865
No 55
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=98.04 E-value=0.00064 Score=70.67 Aligned_cols=296 Identities=11% Similarity=0.091 Sum_probs=156.4
Q ss_pred ccEEEEEeeccC-CCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 74 SKLVLLVSHELS-LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 74 ~~kIl~v~~~~~-~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
+.+|+|.+.... .++.++++.+..... ..++++.+++..... .....++.++.......+......+
T Consensus 352 ~~~ivf~s~~g~~~~~n~~~i~~~l~~~-~~~~~~~w~~~~~~~-----------~~~~~~~~~v~~~s~~~~~~l~~a~ 419 (729)
T 3l7i_A 352 PKTIVFESFGGKNYSDSPKYIYEYMQKY-YPNYRYIWSFKNPDK-----------NVVPGSAEKVKRNSAEYYQAYSEAS 419 (729)
T ss_dssp EEEEEEEBGGGTBSCHHHHHHHHHHHHH-CTTSEEEEEESSGGG-----------CCCCSSCEEEETTSHHHHHHHHHEE
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHh-CCCceEEEEEcCccc-----------ccCCCCcEEEEECCHHHHHHHhcCc
Confidence 445666665432 355556655443322 124788887743211 0012345555555554444445667
Q ss_pred EEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchh-----------------hhhcccccccceeeeehhhHH
Q 012132 153 LIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL-----------------DYVKHLPLVAGAMIDSHVTAE 215 (470)
Q Consensus 153 iV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~-----------------~~~~~~~~~~~~~~~s~~~~~ 215 (470)
+++.++.....+ .++....++.++|+....-+.. ...+.....+..++.+....+
T Consensus 420 ~~v~n~~~~~~~--------~k~~~~~~iq~wHG~~lK~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~s~~~~~ 491 (729)
T 3l7i_A 420 HWVSNARTPLYL--------NKKENQTYIQTWHGTPLKRLANDMKVVRMPGTTTPKYKRNFNRETSRWDYLISPNRYSTE 491 (729)
T ss_dssp EEEESSCCCTTS--------CCCTTCEEEECCSSCCSBCCGGGCSCCCCTTCCHHHHHHHHHHHHTTCSEEEESSHHHHH
T ss_pred EEEECCCCcccc--------ccCCCcEEEECCCCCchhhccccccccccccccCHHHHHHHHHhhccCCEEEeCCHHHHH
Confidence 777765443211 1112245777788752111110 111222345667777776665
Q ss_pred HHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccC----CC-----HH
Q 012132 216 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRG----KG-----QD 286 (470)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~----Kg-----~~ 286 (470)
.+.+ .++++..+ ++..|.+-...-.... .....++.+++++++++++.+|+|+-..... +| ..
T Consensus 492 ~~~~----~f~~~~~~--i~~~G~PR~D~l~~~~--~~~~~~~~~~~~~~~~~~kk~ILyaPT~r~~~~~~~~~~~~~~~ 563 (729)
T 3l7i_A 492 IFRS----AFWMDEER--ILEIGYPRNDVLVNRA--NDQEYLDEIRTHLNLPSDKKVIMYAPTWRDDEFVSKGKYLFELK 563 (729)
T ss_dssp HHHH----HTCCCGGG--EEESCCGGGHHHHHST--TCHHHHHHHHHHTTCCSSCEEEEECCCCCGGGCCGGGSSCCCCT
T ss_pred HHHH----HhCCCcce--EEEcCCCchHHHhccc--chHHHHHHHHHHhCCCCCCeEEEEeeeeeCCccccccccccchh
Confidence 5543 66766544 5566665443222110 0122356789999999999999998655432 11 11
Q ss_pred HHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCC
Q 012132 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQA 366 (470)
Q Consensus 287 ~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~ 366 (470)
.-++.+.+ .++ ++..+++-.. |... +.....+..+.+.-.....++.++|..||++|
T Consensus 564 ~~~~~l~~---~l~------~~~~li~r~H------p~~~---~~~~~~~~~~~~~~~~~~~di~~ll~~aD~lI----- 620 (729)
T 3l7i_A 564 IDLDNLYK---ELG------DDYVILLRMH------YLIS---NALDLSGYENFAIDVSNYNDVSELFLISDCLI----- 620 (729)
T ss_dssp TCHHHHHH---HHT------TTEEEEECCC------HHHH---TTCCCTTCTTTEEECTTCSCHHHHHHTCSEEE-----
T ss_pred hHHHHHHH---HcC------CCeEEEEecC------cchh---ccccccccCCcEEeCCCCcCHHHHHHHhCEEE-----
Confidence 22233332 221 4666666443 3321 11111233455655555579999999999999
Q ss_pred cccccchHHHHHHhcCCCEEecC--CCCcce----e---eecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 367 WGECFGRITIEAMAFQLPVLGTA--AGGTTE----I---VVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 367 ~~E~~g~~~lEAma~G~PvI~s~--~~g~~e----~---v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
.+ ++-++.|++..++|||-.. .....+ + ..+...|-++. +.++|.++|.....+
T Consensus 621 -TD-ySSv~fD~~~l~kPiif~~~D~~~Y~~~~rg~y~d~~~~~pg~~~~----~~~eL~~~i~~~~~~ 683 (729)
T 3l7i_A 621 -TD-YSSVMFDYGILKRPQFFFAYDIDKYDKGLRGFYMNYMEDLPGPIYT----EPYGLAKELKNLDKV 683 (729)
T ss_dssp -ES-SCTHHHHHGGGCCCEEEECTTTTTTTSSCCSBSSCTTSSSSSCEES----SHHHHHHHHTTHHHH
T ss_pred -ee-chHHHHhHHhhCCCEEEecCCHHHHhhccCCcccChhHhCCCCeEC----CHHHHHHHHhhhhcc
Confidence 33 4568999999999999762 111110 0 11112233333 278999998877653
No 56
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=97.88 E-value=0.00053 Score=69.57 Aligned_cols=148 Identities=17% Similarity=0.182 Sum_probs=105.2
Q ss_pred HHHHc-C--CC-----CCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHh------hccc---CCceEEEEEeCCCCcC
Q 012132 260 VRESL-G--VR-----NEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKE------KKLE---VPSVHAVIIGSDMNAQ 321 (470)
Q Consensus 260 ~r~~~-~--~~-----~~~~~i~~vGrl~~~Kg~~~-ll~a~~~l~~~l~~------~~~~---~~~~~l~ivG~g~~~~ 321 (470)
++++. | ++ ++.+.++++-|+..+|...+ ++..+..+.+...+ .... .....+++.|...++.
T Consensus 582 i~~~~~g~~ld~~~~~p~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y 661 (879)
T 1ygp_A 582 IKKENDGVDIINREYLDDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGY 661 (879)
T ss_dssp HHHTTTTCCCSCSTTGGGCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTC
T ss_pred HHHHcCCcEecCCCCCCCeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCc
Confidence 45666 5 44 55789999999999999999 77777766443322 1000 2357888888765544
Q ss_pred hHHHHHHHHHHHhc--------CCCC--cEEEecc--cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecC
Q 012132 322 TKFESELRNYVMQK--------KIQD--RVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389 (470)
Q Consensus 322 ~~~~~~l~~~~~~~--------~l~~--~V~~~g~--~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~ 389 (470)
. ....+.+++... .+.+ +|.|+.. ++-...++.+||+-...|+...|..|..=+-+|..|.+.|+|-
T Consensus 662 ~-~aK~iIklI~~va~~iN~Dp~v~~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtl 740 (879)
T 1ygp_A 662 Y-MAKLIIKLINCVADIVNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTV 740 (879)
T ss_dssp H-HHHHHHHHHHHHHHHHTTCGGGTTSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEES
T ss_pred H-HHHHHHHHHHHHHHHhccChhhCCceEEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecc
Confidence 3 444444444433 2445 6888875 3555567899999999888779999999999999999999998
Q ss_pred CCCcceeeec--CceeeeecC
Q 012132 390 AGGTTEIVVN--GTTGLLHPV 408 (470)
Q Consensus 390 ~~g~~e~v~~--~~~G~l~~~ 408 (470)
-|...|+.++ .+|+++|-.
T Consensus 741 DGanvEi~e~vG~eN~fiFG~ 761 (879)
T 1ygp_A 741 DGANVEITREIGEDNVFLFGN 761 (879)
T ss_dssp CTHHHHHHHHHCGGGSEEESC
T ss_pred cchhHHHHHHcCcccEEEccC
Confidence 8888887654 457777753
No 57
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=97.87 E-value=4.1e-05 Score=74.87 Aligned_cols=95 Identities=15% Similarity=0.046 Sum_probs=70.2
Q ss_pred CcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecC-ceeeeecCCCC
Q 012132 339 DRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNG-TTGLLHPVGKE 411 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~-~~G~l~~~~d~ 411 (470)
+++.+.++..+. ++|+ ++|+|| .-+-.++++||+++|+|+|+-...+ ....+.+. +.|..++.++.
T Consensus 325 ~~~~v~~w~pq~-~vL~h~~~~~fv------th~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~~~~~ 397 (456)
T 2c1x_A 325 GYGMVVPWAPQA-EVLAHEAVGAFV------THCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVF 397 (456)
T ss_dssp TTEEEESCCCHH-HHHTSTTEEEEE------ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGGSC
T ss_pred CceEEecCCCHH-HHhcCCcCCEEE------ecCCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEecCCCc
Confidence 578888987664 6888 678888 4444689999999999999986543 23344455 67888765544
Q ss_pred ChHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 012132 412 GITPLAKNIVKLATHVERRLTMGKRGYERV 441 (470)
Q Consensus 412 ~~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 441 (470)
+.+++.++|.++++|++ .+++.+++++..
T Consensus 398 ~~~~l~~~i~~ll~~~~-~~~~r~~a~~l~ 426 (456)
T 2c1x_A 398 TKSGLMSCFDQILSQEK-GKKLRENLRALR 426 (456)
T ss_dssp CHHHHHHHHHHHHHSHH-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCc-HHHHHHHHHHHH
Confidence 58999999999999875 456666666543
No 58
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.72 E-value=0.0024 Score=59.92 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=69.5
Q ss_pred HHHHHcCCCCC-CeEEEEEeecccCCCH--HHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhc
Q 012132 259 HVRESLGVRNE-DLLFAIINSVSRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK 335 (470)
Q Consensus 259 ~~r~~~~~~~~-~~~i~~vGrl~~~Kg~--~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~ 335 (470)
.+.++.|++.+ +.+.+..|.-.+.|.. +.+.+.+..+.+ .+.++++.|+.. ..+..++..+..
T Consensus 174 ~~l~~~g~~~~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~---------~g~~vvl~g~~~-----e~~~~~~i~~~~ 239 (349)
T 3tov_A 174 EFYSSHGLTDTDILIGFNIGSAVPEKRWPAERFAHVADYFGR---------LGYKTVFFGGPM-----DLEMVQPVVEQM 239 (349)
T ss_dssp HHHHHTTCCTTCCEEEEECCCSSGGGCCCHHHHHHHHHHHHH---------HTCEEEECCCTT-----THHHHHHHHHTC
T ss_pred HHHHHcCCCCCCCEEEEeCCCCCccCCCCHHHHHHHHHHHHh---------CCCeEEEEeCcc-----hHHHHHHHHHhc
Confidence 34456677654 4555666754556654 456666665543 256778887652 344455555554
Q ss_pred CCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecC
Q 012132 336 KIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389 (470)
Q Consensus 336 ~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~ 389 (470)
+ ...+.+.|.. .++..+++.||++|.+-. |..-+ |.++|+|+|+--
T Consensus 240 ~-~~~~~l~g~~sl~e~~ali~~a~~~i~~Ds------G~~Hl-Aaa~g~P~v~lf 287 (349)
T 3tov_A 240 E-TKPIVATGKFQLGPLAAAMNRCNLLITNDS------GPMHV-GISQGVPIVALY 287 (349)
T ss_dssp S-SCCEECTTCCCHHHHHHHHHTCSEEEEESS------HHHHH-HHTTTCCEEEEC
T ss_pred c-cccEEeeCCCCHHHHHHHHHhCCEEEECCC------CHHHH-HHhcCCCEEEEE
Confidence 4 2345566653 689999999999996533 55555 999999999853
No 59
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=97.71 E-value=0.00065 Score=66.91 Aligned_cols=96 Identities=17% Similarity=0.090 Sum_probs=68.8
Q ss_pred CCcEEEecccCCHHHHHHhcCE--EEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeee-cCceeeeecCCC
Q 012132 338 QDRVHFVNKTLTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVV-NGTTGLLHPVGK 410 (470)
Q Consensus 338 ~~~V~~~g~~~~~~~~~~~aDv--~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~-~~~~G~l~~~~d 410 (470)
++++.+.++..+. ++|+.+++ || .-+-.++++||+++|+|+|+-...+ ....+. +-+.|..++ .+
T Consensus 352 ~~~~~v~~~~pq~-~~L~h~~~~~~v------th~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~-~~ 423 (482)
T 2pq6_A 352 ADRGLIASWCPQD-KVLNHPSIGGFL------THCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEID-TN 423 (482)
T ss_dssp TTTEEEESCCCHH-HHHTSTTEEEEE------ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECC-SS
T ss_pred CCCEEEEeecCHH-HHhcCCCCCEEE------ecCCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEEC-CC
Confidence 3689999998765 58877665 66 3344679999999999999987643 223232 456777776 33
Q ss_pred CChHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 012132 411 EGITPLAKNIVKLATHVERRLTMGKRGYERVK 442 (470)
Q Consensus 411 ~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 442 (470)
.+.+++.++|.++++|++ .+.+.+++++...
T Consensus 424 ~~~~~l~~~i~~ll~~~~-~~~~r~~a~~l~~ 454 (482)
T 2pq6_A 424 VKREELAKLINEVIAGDK-GKKMKQKAMELKK 454 (482)
T ss_dssp CCHHHHHHHHHHHHTSHH-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCc-HHHHHHHHHHHHH
Confidence 458999999999999886 3566666665443
No 60
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=97.69 E-value=0.00069 Score=65.72 Aligned_cols=97 Identities=12% Similarity=0.004 Sum_probs=68.4
Q ss_pred CCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecC-ceeeeecCCCCC
Q 012132 338 QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNG-TTGLLHPVGKEG 412 (470)
Q Consensus 338 ~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~-~~G~l~~~~d~~ 412 (470)
.+++.+.++..+ ..+++.+++-++=++ +--++++||+++|+|+|+-...+ ....+.+. +.|..++.++.+
T Consensus 326 ~~~~~vv~w~Pq-~~vL~h~~v~~fvtH----~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~~~~~ 400 (454)
T 3hbf_A 326 KTKGKIVAWAPQ-VEILKHSSVGVFLTH----SGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLT 400 (454)
T ss_dssp TTTEEEESSCCH-HHHHHSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGGGSCC
T ss_pred CCceEEEeeCCH-HHHHhhcCcCeEEec----CCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecCCCCC
Confidence 368888899866 588999995444443 23478999999999999986533 23334443 678887765555
Q ss_pred hHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012132 413 ITPLAKNIVKLATHVERRLTMGKRGYER 440 (470)
Q Consensus 413 ~~~la~~i~~ll~~~~~~~~~~~~a~~~ 440 (470)
.+++.++|.+++++++ .+++.+++++.
T Consensus 401 ~~~l~~av~~ll~~~~-~~~~r~~a~~l 427 (454)
T 3hbf_A 401 KESIKKALELTMSSEK-GGIMRQKIVKL 427 (454)
T ss_dssp HHHHHHHHHHHHSSHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCh-HHHHHHHHHHH
Confidence 8999999999998853 34555555543
No 61
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=97.42 E-value=0.0046 Score=60.44 Aligned_cols=86 Identities=21% Similarity=0.134 Sum_probs=60.7
Q ss_pred CcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----ccee-eecCceeeee-c---
Q 012132 339 DRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEI-VVNGTTGLLH-P--- 407 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~-v~~~~~G~l~-~--- 407 (470)
+++.+.++..+. .+|+ ++|+|| .-+-.++++||+++|+|+|+-...+ .... ++.-+.|+.+ .
T Consensus 332 ~~~~v~~w~pq~-~vL~h~~~~~fv------th~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~ 404 (463)
T 2acv_A 332 GKGMICGWAPQV-EVLAHKAIGGFV------SHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYR 404 (463)
T ss_dssp CSEEEESSCCHH-HHHHSTTEEEEE------ECCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCC
T ss_pred CCEEEEccCCHH-HHhCCCccCeEE------ecCCchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccC
Confidence 478888887765 5776 678888 3444689999999999999987543 2333 3455678877 2
Q ss_pred CC--CCChHHHHHHHHHHHh-CHHHHH
Q 012132 408 VG--KEGITPLAKNIVKLAT-HVERRL 431 (470)
Q Consensus 408 ~~--d~~~~~la~~i~~ll~-~~~~~~ 431 (470)
.+ +.+.+++.++|.++++ +++.++
T Consensus 405 ~~~~~~~~~~l~~ai~~ll~~~~~~r~ 431 (463)
T 2acv_A 405 KGSDVVAAEEIEKGLKDLMDKDSIVHK 431 (463)
T ss_dssp TTCCCCCHHHHHHHHHHHTCTTCTHHH
T ss_pred CCCccccHHHHHHHHHHHHhccHHHHH
Confidence 23 2348999999999997 344443
No 62
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=97.34 E-value=0.036 Score=51.24 Aligned_cols=103 Identities=16% Similarity=0.142 Sum_probs=62.2
Q ss_pred cCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHH-HHHHHHhcCCCCcEE
Q 012132 264 LGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESE-LRNYVMQKKIQDRVH 342 (470)
Q Consensus 264 ~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~-l~~~~~~~~l~~~V~ 342 (470)
.+....+.+++..|.-.+.|.... +-+.++.+.+.+ .++++++.+++ +.+.+ .++..+.. +++.
T Consensus 173 ~~~~~~~~i~l~pga~~~~k~wp~--~~~~~l~~~L~~-----~~~~vvl~~g~-----~~e~~~~~~i~~~~---~~~~ 237 (326)
T 2gt1_A 173 LPTDAGEYAVFLHATTRDDKHWPE--EHWRELIGLLAD-----SGIRIKLPWGA-----PHEEERAKRLAEGF---AYVE 237 (326)
T ss_dssp CCTTTTSEEEEECCCSSGGGSCCH--HHHHHHHHHTTT-----TCCEEEECCSS-----HHHHHHHHHHHTTC---TTEE
T ss_pred ccccCCCEEEEEeCCCCccccCCH--HHHHHHHHHHHH-----CCCcEEEecCC-----HHHHHHHHHHHhhC---Cccc
Confidence 344445667777776556676552 333333333332 46788887434 33333 34443332 2466
Q ss_pred Eeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEec
Q 012132 343 FVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 388 (470)
Q Consensus 343 ~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s 388 (470)
+.|.. .++..+++.||++|.+-. |..=+ |.|+|+|+|+-
T Consensus 238 l~g~~sl~el~ali~~a~l~I~~DS------G~~Hl-Aaa~g~P~v~l 278 (326)
T 2gt1_A 238 VLPKMSLEGVARVLAGAKFVVSVDT------GLSHL-TAALDRPNITV 278 (326)
T ss_dssp ECCCCCHHHHHHHHHTCSEEEEESS------HHHHH-HHHTTCCEEEE
T ss_pred ccCCCCHHHHHHHHHhCCEEEecCC------cHHHH-HHHcCCCEEEE
Confidence 67753 788999999999996633 55555 77799999975
No 63
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=97.23 E-value=0.0011 Score=62.26 Aligned_cols=111 Identities=12% Similarity=0.117 Sum_probs=70.4
Q ss_pred HHHHHHHcCCCC-CCeEEEEEee-cccCCCHH--HHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHH
Q 012132 257 REHVRESLGVRN-EDLLFAIINS-VSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYV 332 (470)
Q Consensus 257 ~~~~r~~~~~~~-~~~~i~~vGr-l~~~Kg~~--~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~ 332 (470)
++.+++.+|++. .+++++..|. ..+.|... .+.+++..+.+ .+++++++|+.. ..+..+++.
T Consensus 167 ~~~~~~~~~~~~~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~---------~~~~vvl~g~~~-----e~~~~~~i~ 232 (348)
T 1psw_A 167 KSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLID---------EGYQVVLFGSAK-----DHEAGNEIL 232 (348)
T ss_dssp HHHHHHHTTCCSSSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHH---------TTCEEEECCCGG-----GHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCccccCCCCHHHHHHHHHHHHH---------CCCeEEEEeChh-----hHHHHHHHH
Confidence 345677788763 4566667776 44667655 66666666543 367888888652 233334443
Q ss_pred HhcC--C-CCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEec
Q 012132 333 MQKK--I-QDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 388 (470)
Q Consensus 333 ~~~~--l-~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s 388 (470)
+..+ . .+.+.+.|.. .++..+++.||++|.+.. |..-+ |.|+|+|+|+-
T Consensus 233 ~~~~~~~~~~~~~l~g~~sl~e~~ali~~a~l~I~~Ds------g~~Hl-Aaa~g~P~v~l 286 (348)
T 1psw_A 233 AALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDS------GLMHV-AAALNRPLVAL 286 (348)
T ss_dssp TTSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEEEESS------HHHHH-HHHTTCCEEEE
T ss_pred HhhhhccccceEeccCcCCHHHHHHHHHhCCEEEecCC------HHHHH-HHHcCCCEEEE
Confidence 3222 0 1234566753 788999999999997754 43333 99999999974
No 64
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=97.06 E-value=0.0075 Score=59.16 Aligned_cols=81 Identities=12% Similarity=0.014 Sum_probs=56.3
Q ss_pred EEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceee-ecCceeeeecCC---CCC
Q 012132 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIV-VNGTTGLLHPVG---KEG 412 (470)
Q Consensus 341 V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v-~~~~~G~l~~~~---d~~ 412 (470)
+...++..+. ++|+.+++-++=++ +--++++||+++|+|+|+-...+ ....+ +.-+.|...+.. ..+
T Consensus 341 ~~v~~w~Pq~-~vL~h~~v~~fvtH----gG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~~~ 415 (480)
T 2vch_A 341 FVIPFWAPQA-QVLAHPSTGGFLTH----CGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVR 415 (480)
T ss_dssp EEEESCCCHH-HHHHSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCC
T ss_pred EEEeCccCHH-HHhCCCCcCeEEec----ccchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccCCccC
Confidence 4555677665 89999995333333 33478999999999999987543 23333 455677776543 334
Q ss_pred hHHHHHHHHHHHhC
Q 012132 413 ITPLAKNIVKLATH 426 (470)
Q Consensus 413 ~~~la~~i~~ll~~ 426 (470)
.++++++|.+++.+
T Consensus 416 ~~~l~~av~~vl~~ 429 (480)
T 2vch_A 416 REEVARVVKGLMEG 429 (480)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999999983
No 65
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=97.03 E-value=0.00028 Score=61.10 Aligned_cols=73 Identities=7% Similarity=-0.030 Sum_probs=53.1
Q ss_pred cEEEecccCCHHHHHH-hcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCc--------ceeeecCceeeeecCCC
Q 012132 340 RVHFVNKTLTVAPYLA-AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT--------TEIVVNGTTGLLHPVGK 410 (470)
Q Consensus 340 ~V~~~g~~~~~~~~~~-~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~--------~e~v~~~~~G~l~~~~d 410 (470)
++...++.+++..+|+ .||++| .-+-..+++|++++|+|.|.-..+.. .+.+.+.+.++++ +
T Consensus 115 ~v~v~~f~~~m~~~l~~~AdlvI------shaGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~~~~---~ 185 (224)
T 2jzc_A 115 KVIGFDFSTKMQSIIRDYSDLVI------SHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSC---A 185 (224)
T ss_dssp EEEECCSSSSHHHHHHHHCSCEE------ESSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCCCEE---C
T ss_pred eEEEeeccchHHHHHHhcCCEEE------ECCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCEEEc---C
Confidence 5667788899999999 999999 44446899999999999998765421 2223333345554 3
Q ss_pred CChHHHHHHHHHH
Q 012132 411 EGITPLAKNIVKL 423 (470)
Q Consensus 411 ~~~~~la~~i~~l 423 (470)
++.|.++|.++
T Consensus 186 --~~~L~~~i~~l 196 (224)
T 2jzc_A 186 --PTETGLIAGLR 196 (224)
T ss_dssp --SCTTTHHHHHH
T ss_pred --HHHHHHHHHHH
Confidence 66787888776
No 66
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=94.85 E-value=1.4 Score=36.50 Aligned_cols=333 Identities=14% Similarity=0.073 Sum_probs=170.5
Q ss_pred cEEEEEeec-cCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhh-HHhhcCCc
Q 012132 75 KLVLLVSHE-LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQET-INTALKAD 152 (470)
Q Consensus 75 ~kIl~v~~~-~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D 152 (470)
|+|+++... +...|...+..+.-..+.+.||+|+++........... ...-....++++-.+...+ +......|
T Consensus 2 mricifmarglegcgvtkfsleqrdwfiknghevtlvyakdksftrts----shdhksfsipvilakeydkalklvndcd 77 (401)
T 1xv5_A 2 MRICIFMARGLEGCGVTKFSLEQRDWFIKNGHEVTLVYAKDKSFTRTS----SHDHKSFSIPVILAKEYDKALKLVNDCD 77 (401)
T ss_dssp CEEEEEETTCCCSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCTTTT----SSSCTTTCEEECTTTCHHHHHHHHTSCS
T ss_pred ceEEEEeeccccccCceeeehhhhhhhhcCCcEEEEEEeccccccccc----cccCccccceeEehhhhHHHhhhhccCc
Confidence 688877654 34466678888888999999999999885543321100 0111234456655555443 33457899
Q ss_pred EEEEcccchhhhHHH-------HhhhcCCccccceeeEEeeeccccchhh--hhcccccccceeeeehh---hHHHHHHh
Q 012132 153 LIVLNTAVAGKWLDA-------VLKEDVPRVLPNVLWWIHEMRGHYFKLD--YVKHLPLVAGAMIDSHV---TAEYWKNR 220 (470)
Q Consensus 153 iV~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~h~~~~~~~~~~--~~~~~~~~~~~~~~s~~---~~~~~~~~ 220 (470)
+.+.++..+...... ++-...|. ..++..-|+..-..+.++ ........+.+...|.. ..-.+.++
T Consensus 78 iliinsvpatsvqeatinnykklldnikps--irvvvyqhdhsvlslrrnlgleetvrradvifshsdngdfnkvlmkew 155 (401)
T 1xv5_A 78 ILIINSVPATSVQEATINNYKKLLDNIKPS--IRVVVYQHDHSVLSLRRNLGLEETVRRADVIFSHSDNGDFNKVLMKEW 155 (401)
T ss_dssp EEEEEECCBTTSCHHHHHHHHHHHHHSCTT--SEEEEEECCCSHHHHTTBSSHHHHHHHCSEEEESCTTSHHHHTHHHHH
T ss_pred EEEEccCccchhHHHHHhhHHHHHhcCCCc--eEEEEEeccchhhhhhhhcChHHhhhhhceEEecCCCCcHHHHHHHhh
Confidence 999887543322111 11122222 345666665432222221 11222344444443332 11122222
Q ss_pred hhhhhcc--CCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCC---CCeEEEEEeecccCCCHHHHHHHHHHH
Q 012132 221 TRERLRI--KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRN---EDLLFAIINSVSRGKGQDLFLHSFYES 295 (470)
Q Consensus 221 ~~~~~~~--~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~i~~vGrl~~~Kg~~~ll~a~~~l 295 (470)
..+...+ +.+..-.++|--++-.. -.+|..+=-+- +--+=-++||-..+||.-.+.+.-.+.
T Consensus 156 ypetvslfddieeaptvynfqppmdi-------------vkvrstywkdvseinmninrwigrtttwkgfyqmfdfhekf 222 (401)
T 1xv5_A 156 YPETVSLFDDIEEAPTVYNFQPPMDI-------------VKVRSTYWKDVSEINMNINRWIGRTTTWKGFYQMFDFHEKF 222 (401)
T ss_dssp SCSSCCSSSCCCCCCCEEECCCCBCH-------------HHHHHHHCCCGGGCEEEEEEEECCSCGGGCHHHHHHHHHHT
T ss_pred ccchhhhhcchhhCCceeccCCCcee-------------eeeehhhhccHHHhhcchhhhhcccchhHhHHHHhhHHHHh
Confidence 1111110 11112223332111111 11222221111 112335789999999998888776665
Q ss_pred HHHHHhhcccCCce-EEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc--------------------c-CCHHHH
Q 012132 296 LELIKEKKLEVPSV-HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--------------------T-LTVAPY 353 (470)
Q Consensus 296 ~~~l~~~~~~~~~~-~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~--------------------~-~~~~~~ 353 (470)
.+ |.- .-++-|-. .. |-.- .+++.|++ ..+.|. . +++.+-
T Consensus 223 lk---------pagkstvmegle--rs-pafi----aikekgip--yeyygnreidkmnlapnqpaqildcyinsemler 284 (401)
T 1xv5_A 223 LK---------PAGKSTVMEGLE--RS-PAFI----AIKEKGIP--YEYYGNREIDKMNLAPNQPAQILDCYINSEMLER 284 (401)
T ss_dssp TT---------TTTCEEEEECCC--CS-HHHH----HHHHTTCC--EEEECGGGGGGCCCSSSCCEEEESCCCHHHHHHH
T ss_pred cC---------ccchhhhhhhhh--cC-CceE----EEcccCCc--hhhcCcchhhhhcCCCCCcchhhhheecHHHHHH
Confidence 43 332 33444432 22 2221 23444553 444442 1 445566
Q ss_pred HHhcCEEEEccCC----cccccchHHHHHHhcCCCEEecC-CC--------CcceeeecCcee-eeecCCCCChHHHHHH
Q 012132 354 LAAIDVLVQNSQA----WGECFGRITIEAMAFQLPVLGTA-AG--------GTTEIVVNGTTG-LLHPVGKEGITPLAKN 419 (470)
Q Consensus 354 ~~~aDv~v~pS~~----~~E~~g~~~lEAma~G~PvI~s~-~~--------g~~e~v~~~~~G-~l~~~~d~~~~~la~~ 419 (470)
+..+.....-|.- -....-.+-+|--|||+..+--. .| ..+- ..+ +.| +.++.+| .++--+.
T Consensus 285 msksgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntpl-tsh-dsgiiwfdend--mestfer 360 (401)
T 1xv5_A 285 MSKSGFGYQLSKLNQKYLQRSLEYTHLELGACGTIPVFWKSTGENLKFRVDNTPL-TSH-DSGIIWFDEND--MESTFER 360 (401)
T ss_dssp HHTEEEEEECCCCCGGGCSSCCCHHHHHHHHHTSEEEEEHHHHHHSBCTTTCCBG-GGS-CCSCEEECTTC--HHHHHHH
T ss_pred hhhcCcccchHHHHHHHHHhhhhhheeecccccceeeeecccCcceEEEecCCcc-ccc-CCceEEecCCc--hHHHHHH
Confidence 6666665554431 02244577889999997655322 12 1111 112 234 4567777 9999999
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHcChh
Q 012132 420 IVKLATHVERRLTMGKRGYERVKEIFQEH 448 (470)
Q Consensus 420 i~~ll~~~~~~~~~~~~a~~~~~~~fs~~ 448 (470)
|.++-+|..+..+-.+.|+++.-++-+-.
T Consensus 361 ikelssdralydrerekayeflyqhqdss 389 (401)
T 1xv5_A 361 IKELSSDRALYDREREKAYEFLYQHQDSS 389 (401)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHBHH
T ss_pred HHHhccchhhhhHHHHHHHHHHHhccccc
Confidence 99999999999988899988776644433
No 67
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=91.46 E-value=0.54 Score=43.15 Aligned_cols=80 Identities=21% Similarity=0.156 Sum_probs=47.1
Q ss_pred ccccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCCh-------
Q 012132 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ------- 142 (470)
Q Consensus 70 ~~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 142 (470)
.+|++|||+|+. +..+...+.++|.+.||+|..+...++.... ...+.......|++++.....
T Consensus 18 ~~~~~mrIvf~G-------~~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~~--~~~v~~~A~~~gIpv~~~~~~~~~~~~~ 88 (329)
T 2bw0_A 18 LYFQSMKIAVIG-------QSLFGQEVYCHLRKEGHEVVGVFTVPDKDGK--ADPLGLEAEKDGVPVFKYSRWRAKGQAL 88 (329)
T ss_dssp ---CCCEEEEEC-------CHHHHHHHHHHHHHTTCEEEEEEECCCCSSC--CCHHHHHHHHHTCCEEECSCCEETTEEC
T ss_pred ccCCCCEEEEEc-------CcHHHHHHHHHHHHCCCeEEEEEeCCCcCCC--CCHHHHHHHHcCCCEEecCccccccccc
Confidence 346679999993 3456666778888889998655543222111 011234455677877654322
Q ss_pred ---hhHHhhcCCcEEEEcc
Q 012132 143 ---ETINTALKADLIVLNT 158 (470)
Q Consensus 143 ---~~~~~~~~~DiV~~~~ 158 (470)
....+..+||++++-.
T Consensus 89 ~~~~~~l~~~~~Dliv~a~ 107 (329)
T 2bw0_A 89 PDVVAKYQALGAELNVLPF 107 (329)
T ss_dssp HHHHHHHHTTCCSEEEESS
T ss_pred HHHHHHHHhcCCCEEEEee
Confidence 2334568999999864
No 68
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=90.31 E-value=0.96 Score=41.20 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=47.6
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhH----HHhhhhhhhhcceeeEecCCh----
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEV----IYSLEHKMWDRGVQVISAKGQ---- 142 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---- 142 (470)
+|++|||+|+.+. .+.....++|.+.||+|..+...++.+.... ...+.......|++++.....
T Consensus 4 m~~~mrivf~Gt~-------~fa~~~L~~L~~~~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~~~~ 76 (318)
T 3q0i_A 4 MSQSLRIVFAGTP-------DFAARHLAALLSSEHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVYQPENFKSDE 76 (318)
T ss_dssp ---CCEEEEECCS-------HHHHHHHHHHHTSSSEEEEEECCCC---------CCCHHHHHHHHTTCCEECCSCSCSHH
T ss_pred cccCCEEEEEecC-------HHHHHHHHHHHHCCCcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEEccCcCCCHH
Confidence 3567999999753 3555667778888999876665433221110 112344556678887654332
Q ss_pred -hhHHhhcCCcEEEEcc
Q 012132 143 -ETINTALKADLIVLNT 158 (470)
Q Consensus 143 -~~~~~~~~~DiV~~~~ 158 (470)
....+..+||++++-.
T Consensus 77 ~~~~l~~~~~Dliv~~~ 93 (318)
T 3q0i_A 77 SKQQLAALNADLMVVVA 93 (318)
T ss_dssp HHHHHHTTCCSEEEESS
T ss_pred HHHHHHhcCCCEEEEeC
Confidence 2445678999999864
No 69
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=87.96 E-value=1.4 Score=40.04 Aligned_cols=79 Identities=11% Similarity=0.081 Sum_probs=47.3
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchh----HHHhhhhhhhhcceeeEecCCh-----h
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE----VIYSLEHKMWDRGVQVISAKGQ-----E 143 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-----~ 143 (470)
|+|||+|+.+.- +.....++|.+.||+|..+...++.+... ....+.....+.|++++..... .
T Consensus 1 ~~mrivf~Gtp~-------fa~~~L~~L~~~~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv~~~~~~~~~~~~ 73 (314)
T 3tqq_A 1 MSLKIVFAGTPQ-------FAVPTLRALIDSSHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPIIQPFSLRDEVEQ 73 (314)
T ss_dssp CCCEEEEEECSG-------GGHHHHHHHHHSSSEEEEEECCCC----------CCHHHHHHHHTTCCEECCSCSSSHHHH
T ss_pred CCcEEEEECCCH-------HHHHHHHHHHHCCCeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCEECcccCCCHHHH
Confidence 468999998642 34455677777899987666543332111 1112344556678887654332 2
Q ss_pred hHHhhcCCcEEEEcc
Q 012132 144 TINTALKADLIVLNT 158 (470)
Q Consensus 144 ~~~~~~~~DiV~~~~ 158 (470)
...+..+||++++-.
T Consensus 74 ~~l~~~~~Dliv~~~ 88 (314)
T 3tqq_A 74 EKLIAMNADVMVVVA 88 (314)
T ss_dssp HHHHTTCCSEEEEES
T ss_pred HHHHhcCCCEEEEcC
Confidence 445678999999864
No 70
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=87.72 E-value=0.77 Score=40.96 Aligned_cols=43 Identities=19% Similarity=0.071 Sum_probs=30.7
Q ss_pred ccccccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEec
Q 012132 70 SFMKSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 70 ~~~~~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
..|+.||||+|...-.+.+- .......++.|.+.||+|.++-.
T Consensus 18 ~~m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DL 61 (280)
T 4gi5_A 18 LYFQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDL 61 (280)
T ss_dssp ----CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred chhhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 45788999999876545443 45667788999999999999874
No 71
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=87.32 E-value=4.5 Score=31.29 Aligned_cols=112 Identities=12% Similarity=0.166 Sum_probs=73.1
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHhc---
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF--- 381 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~--- 381 (470)
...+++|+.+.. .....++...++.|....|.......+....+.. .|++++-..- .+.-|+.+++.+..
T Consensus 4 ~~~~ILivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l-~~~~g~~~~~~lr~~~~ 78 (144)
T 3kht_A 4 RSKRVLVVEDNP----DDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGL-PIANGFEVMSAVRKPGA 78 (144)
T ss_dssp -CEEEEEECCCH----HHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTC-GGGCHHHHHHHHHSSST
T ss_pred CCCEEEEEeCCH----HHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCC-CCCCHHHHHHHHHhccc
Confidence 356788888752 4667788888887754335555544444444433 5887775441 44456778877764
Q ss_pred --CCCEEecCCCC----cceeeecCceeeeecCC-CCChHHHHHHHHHHHh
Q 012132 382 --QLPVLGTAAGG----TTEIVVNGTTGLLHPVG-KEGITPLAKNIVKLAT 425 (470)
Q Consensus 382 --G~PvI~s~~~g----~~e~v~~~~~G~l~~~~-d~~~~~la~~i~~ll~ 425 (470)
++|+|+..... ..+.+..|..+++..|. + .++|.++|..+++
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~--~~~l~~~i~~~l~ 127 (144)
T 3kht_A 79 NQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNN--VTDFYGRIYAIFS 127 (144)
T ss_dssp TTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTS--HHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCc--HHHHHHHHHHHHH
Confidence 67887643222 23345567889999998 8 9999999998875
No 72
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=87.09 E-value=4.4 Score=30.87 Aligned_cols=110 Identities=9% Similarity=0.096 Sum_probs=71.6
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh---------cCEEEEccCCcccccchHHHHHH
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA---------IDVLVQNSQAWGECFGRITIEAM 379 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~---------aDv~v~pS~~~~E~~g~~~lEAm 379 (470)
.+++|+.+.. .....+++..++.|....|.......+....+.. .|++++-..- .+.-|..+++.+
T Consensus 3 ~~ilivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~-~~~~g~~~~~~l 77 (140)
T 1k68_A 3 KKIFLVEDNK----ADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNL-PKKDGREVLAEI 77 (140)
T ss_dssp CEEEEECCCH----HHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSC-SSSCHHHHHHHH
T ss_pred CeEEEEeCCH----HHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCC-CcccHHHHHHHH
Confidence 4677777652 4677788888877754356666655555566553 6888875441 334466677666
Q ss_pred h-----cCCCEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 380 A-----FQLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 380 a-----~G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
. .++|+|... ... ..+....|..+++..|-+ .++|.++|..++.
T Consensus 78 ~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~ 130 (140)
T 1k68_A 78 KSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSAN--LSQLFQIVKGIEE 130 (140)
T ss_dssp HHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHHH
T ss_pred HcCcccccccEEEEecCCcHHHHHHHHHhchhheecCCCC--HHHHHHHHHHHHH
Confidence 4 457777543 222 233444577899999988 9999999988864
No 73
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=84.43 E-value=5.5 Score=31.14 Aligned_cols=110 Identities=13% Similarity=0.146 Sum_probs=72.1
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH-----------hcCEEEEccCCcccccchHHH
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA-----------AIDVLVQNSQAWGECFGRITI 376 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~-----------~aDv~v~pS~~~~E~~g~~~l 376 (470)
..+++|+.+.. .....+++..++.|....|.......+..+.+. ..|++++-..- .+.-|+.++
T Consensus 4 ~~~ILivddd~----~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l-~~~~g~~~~ 78 (152)
T 3heb_A 4 SVTIVMIEDDL----GHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNL-PDMTGIDIL 78 (152)
T ss_dssp -CEEEEECCCH----HHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBC-SSSBHHHHH
T ss_pred CceEEEEeCCH----HHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCC-CCCcHHHHH
Confidence 35778887752 467788888888876545666655555555553 35777765431 444567777
Q ss_pred HHHhc-----CCCEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHH
Q 012132 377 EAMAF-----QLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 424 (470)
Q Consensus 377 EAma~-----G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 424 (470)
+.+.. ++|+|... ... ..+....|..+++..|-+ .++|.++|.++.
T Consensus 79 ~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~ 133 (152)
T 3heb_A 79 KLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVN--YENFANAIRQLG 133 (152)
T ss_dssp HHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHH
T ss_pred HHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCC--HHHHHHHHHHHH
Confidence 77654 57777543 222 233445677899999988 999999998874
No 74
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=84.26 E-value=4.8 Score=34.25 Aligned_cols=73 Identities=10% Similarity=0.037 Sum_probs=45.6
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCc--eEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC-----------
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGT--KVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG----------- 141 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 141 (470)
|||+++.+ |....+..+.++|.+.++ +|..+..+.+... ........|++++....
T Consensus 2 ~rI~vl~S-----G~g~~~~~~l~~l~~~~~~~~i~~Vvs~~~~~~------~~~~A~~~gIp~~~~~~~~~~~r~~~~~ 70 (216)
T 2ywr_A 2 LKIGVLVS-----GRGSNLQAIIDAIESGKVNASIELVISDNPKAY------AIERCKKHNVECKVIQRKEFPSKKEFEE 70 (216)
T ss_dssp EEEEEEEC-----SCCHHHHHHHHHHHTTSSCEEEEEEEESCTTCH------HHHHHHHHTCCEEECCGGGSSSHHHHHH
T ss_pred CEEEEEEe-----CCcHHHHHHHHHHHhCCCCCeEEEEEeCCCChH------HHHHHHHcCCCEEEeCcccccchhhhhH
Confidence 68988864 334678888899988887 6654444332211 23445667888764221
Q ss_pred -hhhHHhhcCCcEEEEcc
Q 012132 142 -QETINTALKADLIVLNT 158 (470)
Q Consensus 142 -~~~~~~~~~~DiV~~~~ 158 (470)
.....+..++|+|++-.
T Consensus 71 ~~~~~l~~~~~Dliv~a~ 88 (216)
T 2ywr_A 71 RMALELKKKGVELVVLAG 88 (216)
T ss_dssp HHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHhcCCCEEEEeC
Confidence 12334568999999865
No 75
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=84.10 E-value=5.5 Score=34.19 Aligned_cols=74 Identities=14% Similarity=0.032 Sum_probs=46.5
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhC--CceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC----------
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG---------- 141 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 141 (470)
+|||+|+.+ |....+..+.++|.+. +++|..+....+... ........|++++....
T Consensus 22 ~~rI~~l~S-----G~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~------~~~~A~~~gIp~~~~~~~~~~~r~~~~ 90 (229)
T 3auf_A 22 MIRIGVLIS-----GSGTNLQAILDGCREGRIPGRVAVVISDRADAY------GLERARRAGVDALHMDPAAYPSRTAFD 90 (229)
T ss_dssp CEEEEEEES-----SCCHHHHHHHHHHHTTSSSEEEEEEEESSTTCH------HHHHHHHTTCEEEECCGGGSSSHHHHH
T ss_pred CcEEEEEEe-----CCcHHHHHHHHHHHhCCCCCeEEEEEcCCCchH------HHHHHHHcCCCEEEECcccccchhhcc
Confidence 479999874 3345678888888876 678765554433211 23455677888864321
Q ss_pred --hhhHHhhcCCcEEEEcc
Q 012132 142 --QETINTALKADLIVLNT 158 (470)
Q Consensus 142 --~~~~~~~~~~DiV~~~~ 158 (470)
.....+..+||+|++-.
T Consensus 91 ~~~~~~l~~~~~Dliv~ag 109 (229)
T 3auf_A 91 AALAERLQAYGVDLVCLAG 109 (229)
T ss_dssp HHHHHHHHHTTCSEEEESS
T ss_pred HHHHHHHHhcCCCEEEEcC
Confidence 12334568999999865
No 76
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=84.09 E-value=3.2 Score=37.69 Aligned_cols=79 Identities=16% Similarity=0.063 Sum_probs=48.3
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhH----HHhhhhhhhhcceeeEecCCh-----h
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEV----IYSLEHKMWDRGVQVISAKGQ-----E 143 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-----~ 143 (470)
+||||+|+.+.- +.....++|.+.||+|..+...++...... ...+.......|++++..... .
T Consensus 3 ~mmrIvf~Gtp~-------fa~~~L~~L~~~~~~v~~Vvt~pd~~~gRg~~l~~~pv~~~A~~~gIpv~~~~~~~~~~~~ 75 (317)
T 3rfo_A 3 AMIKVVFMGTPD-------FSVPVLRRLIEDGYDVIGVVTQPDRPVGRKKVLTPTPVKVEAEKHGIPVLQPLRIREKDEY 75 (317)
T ss_dssp TTSEEEEECCST-------THHHHHHHHHHTTCEEEEEECCCCCEETTTTEECCCHHHHHHHHTTCCEECCSCTTSHHHH
T ss_pred CceEEEEEeCCH-------HHHHHHHHHHHCCCcEEEEEeCCCcccCCCcccCCCHHHHHHHHcCCCEEccccCCCHHHH
Confidence 468999997642 344556777778999976665443322111 112344556678888754332 2
Q ss_pred hHHhhcCCcEEEEcc
Q 012132 144 TINTALKADLIVLNT 158 (470)
Q Consensus 144 ~~~~~~~~DiV~~~~ 158 (470)
...+..+||++++-.
T Consensus 76 ~~l~~~~~Dliv~~~ 90 (317)
T 3rfo_A 76 EKVLALEPDLIVTAA 90 (317)
T ss_dssp HHHHHHCCSEEEESS
T ss_pred HHHHhcCCCEEEEcC
Confidence 334568999999864
No 77
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=84.05 E-value=3 Score=35.83 Aligned_cols=39 Identities=15% Similarity=0.084 Sum_probs=26.0
Q ss_pred cccccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 69 ~~~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
...++.|+|++.. |....-..+++.|.++||+|.+++..
T Consensus 16 ~~~l~~~~ilVtG------atG~iG~~l~~~L~~~G~~V~~~~R~ 54 (236)
T 3e8x_A 16 NLYFQGMRVLVVG------ANGKVARYLLSELKNKGHEPVAMVRN 54 (236)
T ss_dssp -----CCEEEEET------TTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred ccCcCCCeEEEEC------CCChHHHHHHHHHHhCCCeEEEEECC
Confidence 3445678887764 33456677888999999999998854
No 78
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=83.52 E-value=4.4 Score=31.42 Aligned_cols=111 Identities=7% Similarity=0.119 Sum_probs=70.6
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhc---
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF--- 381 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~--- 381 (470)
...+++|+.+.. .....++...+..|. .|.......+....+. ..|++++-... .+.-|+.+++.+..
T Consensus 7 ~~~~iLivd~~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~ 79 (147)
T 2zay_A 7 KWWRIMLVDTQL----PALAASISALSQEGF--DIIQCGNAIEAVPVAVKTHPHLIITEANM-PKISGMDLFNSLKKNPQ 79 (147)
T ss_dssp -CEEEEEECTTG----GGGHHHHHHHHHHTE--EEEEESSHHHHHHHHHHHCCSEEEEESCC-SSSCHHHHHHHHHTSTT
T ss_pred CCceEEEEeCCH----HHHHHHHHHHHHcCC--eEEEeCCHHHHHHHHHcCCCCEEEEcCCC-CCCCHHHHHHHHHcCcc
Confidence 457888888753 356667777776654 3554444344444443 36888875441 34456777877764
Q ss_pred --CCCEEec-CCCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 382 --QLPVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 382 --G~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
++|||.. .... ..+.+..|..+++..|-+ .++|..+|..++..
T Consensus 80 ~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 80 TASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVN--AIRLSARIKRVLKL 128 (147)
T ss_dssp TTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCC--HHHHHHHHHHHHHH
Confidence 6787754 3222 233345678899999988 99999999988763
No 79
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=83.24 E-value=1.5 Score=36.70 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=30.7
Q ss_pred ccccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecC
Q 012132 72 MKSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|+||||+++..+ +.|. ...+..+++.+.+.|++|.++...
T Consensus 3 M~M~kilii~~S--~~g~T~~la~~i~~~l~~~g~~v~~~~l~ 43 (200)
T 2a5l_A 3 MSSPYILVLYYS--RHGATAEMARQIARGVEQGGFEARVRTVP 43 (200)
T ss_dssp --CCEEEEEECC--SSSHHHHHHHHHHHHHHHTTCEEEEEBCC
T ss_pred CCcceEEEEEeC--CCChHHHHHHHHHHHHhhCCCEEEEEEhh
Confidence 556799999865 3554 788889999999999999988743
No 80
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=83.10 E-value=7.5 Score=29.85 Aligned_cols=114 Identities=8% Similarity=-0.053 Sum_probs=71.8
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh-------cCEEEEccCCcccccchHHHHHH
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA-------IDVLVQNSQAWGECFGRITIEAM 379 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~-------aDv~v~pS~~~~E~~g~~~lEAm 379 (470)
...+++|+.+.. .....++...+..+....|.......+....+.. .|++++-..- .+.-|+.+++.+
T Consensus 8 ~~~~iLivdd~~----~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l 82 (146)
T 3ilh_A 8 KIDSVLLIDDDD----IVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINM-PGINGWELIDLF 82 (146)
T ss_dssp CEEEEEEECSCH----HHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSC-SSSCHHHHHHHH
T ss_pred ccceEEEEeCCH----HHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCC-CCCCHHHHHHHH
Confidence 346778887752 3566777777776643245544444555555554 6888875441 444567777665
Q ss_pred hc-------CCCEEecCCCC----cceeeecC-ceeeeecCCCCChHHHHHHHHHHHhCH
Q 012132 380 AF-------QLPVLGTAAGG----TTEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATHV 427 (470)
Q Consensus 380 a~-------G~PvI~s~~~g----~~e~v~~~-~~G~l~~~~d~~~~~la~~i~~ll~~~ 427 (470)
.. .+|+|...... ..+....| ..+++..|-+ .++|.++|.+.....
T Consensus 83 ~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~--~~~L~~~i~~~~~~~ 140 (146)
T 3ilh_A 83 KQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLT--ANALNNLYNKVLNEG 140 (146)
T ss_dssp HHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCC--HHHHHHHHHHHHCC-
T ss_pred HHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCC--HHHHHHHHHHHHHhc
Confidence 44 56776543222 22333445 6789999988 999999999988754
No 81
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=83.03 E-value=10 Score=28.99 Aligned_cols=110 Identities=9% Similarity=0.006 Sum_probs=69.8
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHhc---
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF--- 381 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~--- 381 (470)
...+++|+.+.. .....++...+..|. .|......++....+.. .|++++-... .+.-|..+++.+..
T Consensus 6 ~~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~ 78 (142)
T 3cg4_A 6 HKGDVMIVDDDA----HVRIAVKTILSDAGF--HIISADSGGQCIDLLKKGFSGVVLLDIMM-PGMDGWDTIRAILDNSL 78 (142)
T ss_dssp CCCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHTCCCEEEEEESCC-SSSCHHHHHHHHHHTTC
T ss_pred CCCeEEEEcCCH----HHHHHHHHHHHHCCe--EEEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhhcc
Confidence 456788887752 466777777777764 35544444455555543 5777765431 33456677777654
Q ss_pred --CCCEEec-CCC---CcceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 382 --QLPVLGT-AAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 382 --G~PvI~s-~~~---g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
.+|||.. ... ...+.+..|..+++..|-+ .++|.++|..++.
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 79 EQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFD--NEDLIEKTTFFMG 126 (142)
T ss_dssp CTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCC--HHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCC--HHHHHHHHHHHHH
Confidence 4677653 222 2334455577789999888 9999999988874
No 82
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=82.66 E-value=6.8 Score=30.08 Aligned_cols=111 Identities=11% Similarity=0.109 Sum_probs=70.4
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH----hcCEEEEccCCcccccchHHHHHHh---c
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA----AIDVLVQNSQAWGECFGRITIEAMA---F 381 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~----~aDv~v~pS~~~~E~~g~~~lEAma---~ 381 (470)
.+++|+.+.. .....++...++.|. .|.......+....+. ..|++++-..- .+.-|..+++.+. .
T Consensus 4 ~~ilivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~ 76 (143)
T 3jte_A 4 AKILVIDDES----TILQNIKFLLEIDGN--EVLTASSSTEGLRIFTENCNSIDVVITDMKM-PKLSGMDILREIKKITP 76 (143)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHTTTTCCEEEEESCC-SSSCHHHHHHHHHHHCT
T ss_pred CEEEEEcCCH----HHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHHhCCCCCCEEEEeCCC-CCCcHHHHHHHHHHhCC
Confidence 5677777652 466777888877663 3544444344445554 46888775441 3445666665554 3
Q ss_pred CCCEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhCHH
Q 012132 382 QLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 428 (470)
Q Consensus 382 G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~ 428 (470)
.+|+|... ... ..+.+..|..+++..|.+ .++|..+|..++....
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~l~~~~~~~~ 125 (143)
T 3jte_A 77 HMAVIILTGHGDLDNAILAMKEGAFEYLRKPVT--AQDLSIAINNAINRKK 125 (143)
T ss_dssp TCEEEEEECTTCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCHHHHHHHHHhCcceeEeCCCC--HHHHHHHHHHHHHHHH
Confidence 67777543 222 234455678899999988 9999999999886433
No 83
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=82.28 E-value=15 Score=28.07 Aligned_cols=110 Identities=14% Similarity=0.059 Sum_probs=69.8
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH---hcCEEEEccCCccc-ccchHHHHHHh--c
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---AIDVLVQNSQAWGE-CFGRITIEAMA--F 381 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~---~aDv~v~pS~~~~E-~~g~~~lEAma--~ 381 (470)
..+++|+.+.. .....++...++.|. .|.......+....+. ..|++++-..- .+ .-|..+++.+. .
T Consensus 5 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l-~~~~~g~~~~~~l~~~~ 77 (140)
T 3h5i_A 5 DKKILIVEDSK----FQAKTIANILNKYGY--TVEIALTGEAAVEKVSGGWYPDLILMDIEL-GEGMDGVQTALAIQQIS 77 (140)
T ss_dssp -CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHTTCCCSEEEEESSC-SSSCCHHHHHHHHHHHC
T ss_pred CcEEEEEeCCH----HHHHHHHHHHHHcCC--EEEEecChHHHHHHHhcCCCCCEEEEeccC-CCCCCHHHHHHHHHhCC
Confidence 45778887752 466777888887764 3544444344445553 35888875541 23 44666666554 4
Q ss_pred CCCEEecC-CC---CcceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 382 QLPVLGTA-AG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 382 G~PvI~s~-~~---g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
.+|+|... .. ...+....|..+++..|-+ .++|.++|..++..
T Consensus 78 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 78 ELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSAT--EQVLITIVEMALRL 124 (140)
T ss_dssp CCCEEEEESSSSCCCCGGGGGSCEEEEEETTCC--HHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCC--HHHHHHHHHHHHHH
Confidence 78887542 22 2334455577899999988 99999999988753
No 84
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=82.18 E-value=7 Score=29.77 Aligned_cols=107 Identities=10% Similarity=0.079 Sum_probs=65.9
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHh--c-
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA--F- 381 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma--~- 381 (470)
...+++|+.+.. .....++...+..|. .|.......+....+.. .|++++| +.-|+.+++.+. .
T Consensus 17 ~~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~dlvi~~-----~~~g~~~~~~l~~~~~ 85 (137)
T 2pln_A 17 GSMRVLLIEKNS----VLGGEIEKGLNVKGF--MADVTESLEDGEYLMDIRNYDLVMVS-----DKNALSFVSRIKEKHS 85 (137)
T ss_dssp TCSEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHHHHHSCCSEEEEC-----STTHHHHHHHHHHHST
T ss_pred CCCeEEEEeCCH----HHHHHHHHHHHHcCc--EEEEeCCHHHHHHHHHcCCCCEEEEc-----CccHHHHHHHHHhcCC
Confidence 456777877652 356667777776654 45444443444444433 5888733 333556665554 3
Q ss_pred CCCEEecC-CCC---cceeeecCceeeeecCC-CCChHHHHHHHHHHHhC
Q 012132 382 QLPVLGTA-AGG---TTEIVVNGTTGLLHPVG-KEGITPLAKNIVKLATH 426 (470)
Q Consensus 382 G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~-d~~~~~la~~i~~ll~~ 426 (470)
.+|+|... ... ..+.+..|..+++..|- + .++|..+|..++..
T Consensus 86 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~--~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 86 SIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRS--IKALVARIEARLRF 133 (137)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSC--HHHHHHHHHHHTC-
T ss_pred CccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCC--HHHHHHHHHHHHhh
Confidence 77777543 222 23344567789999988 8 99999999988754
No 85
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=82.15 E-value=2.4 Score=33.29 Aligned_cols=40 Identities=13% Similarity=0.035 Sum_probs=33.1
Q ss_pred ccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceE-EEEecC
Q 012132 74 SKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKV-NWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V-~v~~~~ 113 (470)
.||++|+.+..|.|.- .+...+++.++.+.||+| .||-..
T Consensus 12 ~~~~~ivv~~~Pyg~~~a~~Al~~A~aala~g~eV~~VFf~~ 53 (140)
T 2d1p_A 12 SMRFAIVVTGPAYGTQQASSAFQFAQALIADGHELSSVFFYR 53 (140)
T ss_dssp CCEEEEEECSCSSSSSHHHHHHHHHHHHHHTTCEEEEEEECG
T ss_pred ceEEEEEEcCCCCCcHHHHHHHHHHHHHHHCCCccCEEEEec
Confidence 5799999987777544 588899999999999999 888744
No 86
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=82.06 E-value=12 Score=28.54 Aligned_cols=110 Identities=11% Similarity=0.038 Sum_probs=70.7
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHhc----
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF---- 381 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~---- 381 (470)
..+++|+.+.. .....+++..++.|. .|.......+....+.. .|++++-..- .+.-|..+++.+..
T Consensus 6 ~~~iLivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~~ 78 (140)
T 3grc_A 6 RPRILICEDDP----DIARLLNLMLEKGGF--DSDMVHSAAQALEQVARRPYAAMTVDLNL-PDQDGVSLIRALRRDSRT 78 (140)
T ss_dssp CSEEEEECSCH----HHHHHHHHHHHHTTC--EEEEECSHHHHHHHHHHSCCSEEEECSCC-SSSCHHHHHHHHHTSGGG
T ss_pred CCCEEEEcCCH----HHHHHHHHHHHHCCC--eEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhCccc
Confidence 45778887752 356777777777664 35444443444444433 5888775441 44456777777654
Q ss_pred -CCCEEecCCCC----cc-eeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 382 -QLPVLGTAAGG----TT-EIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 382 -G~PvI~s~~~g----~~-e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
.+|+|...... .. +....|..+++..|-+ .++|..+|..+++.
T Consensus 79 ~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 79 RDLAIVVVSANAREGELEFNSQPLAVSTWLEKPID--ENLLILSLHRAIDN 127 (140)
T ss_dssp TTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCC--HHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCC--HHHHHHHHHHHHHh
Confidence 67877643222 22 4555677889999988 99999999998763
No 87
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=81.95 E-value=8.6 Score=29.59 Aligned_cols=111 Identities=8% Similarity=0.076 Sum_probs=72.3
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH------------hcCEEEEccCCcccccchHH
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA------------AIDVLVQNSQAWGECFGRIT 375 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~------------~aDv~v~pS~~~~E~~g~~~ 375 (470)
..+++|+.+.. .....+++..++.|....|.......+....+. ..|++++-..- .+.-|..+
T Consensus 6 ~~~iLivdd~~----~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l-~~~~g~~~ 80 (149)
T 1k66_A 6 TQPLLVVEDSD----EDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNL-PGTDGREV 80 (149)
T ss_dssp TSCEEEECCCH----HHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCC-SSSCHHHH
T ss_pred CccEEEEECCH----HHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCC-CCCCHHHH
Confidence 45677877752 467778888888775435666655555555554 35888865441 33456677
Q ss_pred HHHHh-----cCCCEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 376 IEAMA-----FQLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 376 lEAma-----~G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
++.+. ..+|+|... ... ..+....|..+++..|-+ .++|.++|..++.
T Consensus 81 ~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~ 137 (149)
T 1k66_A 81 LQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLE--IDRLTETVQTFIK 137 (149)
T ss_dssp HHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHHH
T ss_pred HHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCC--HHHHHHHHHHHHH
Confidence 77765 457777543 222 233444577899999888 9999999988764
No 88
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=81.84 E-value=2.4 Score=32.72 Aligned_cols=39 Identities=10% Similarity=-0.075 Sum_probs=31.4
Q ss_pred cEEEEEeeccCCCch-hHHHHHHHHHHHhCCceE-EEEecC
Q 012132 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKV-NWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V-~v~~~~ 113 (470)
||++++.+..+.+.. .....+++..+.+.||+| .|+...
T Consensus 1 mk~~iiv~~~p~~~~~~~~al~~a~a~~~~g~~v~~vff~~ 41 (130)
T 2hy5_A 1 MKFALQINEGPYQHQASDSAYQFAKAALEKGHEIFRVFFYH 41 (130)
T ss_dssp CEEEEEECSCTTTSTHHHHHHHHHHHHHHTTCEEEEEEECG
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCeeCEEEEec
Confidence 588888877666443 578899999999999999 888744
No 89
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=81.28 E-value=7.2 Score=32.88 Aligned_cols=77 Identities=21% Similarity=0.162 Sum_probs=47.7
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhCC--ceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC-------
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------- 141 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 141 (470)
.|+++||+++.+ |....+..+..++.+.+ ++|..+..+.+.... .+.....|++++....
T Consensus 4 ~m~~~ri~vl~S-----G~gsnl~all~~~~~~~l~~~I~~Visn~~~a~~------l~~A~~~gIp~~~~~~~~~~~r~ 72 (209)
T 4ds3_A 4 SMKRNRVVIFIS-----GGGSNMEALIRAAQAPGFPAEIVAVFSDKAEAGG------LAKAEAAGIATQVFKRKDFASKE 72 (209)
T ss_dssp --CCEEEEEEES-----SCCHHHHHHHHHHTSTTCSEEEEEEEESCTTCTH------HHHHHHTTCCEEECCGGGSSSHH
T ss_pred cCCCccEEEEEE-----CCcHHHHHHHHHHHcCCCCcEEEEEEECCcccHH------HHHHHHcCCCEEEeCccccCCHH
Confidence 366789988874 44567888888887643 677666554332211 2345567888765321
Q ss_pred -----hhhHHhhcCCcEEEEcc
Q 012132 142 -----QETINTALKADLIVLNT 158 (470)
Q Consensus 142 -----~~~~~~~~~~DiV~~~~ 158 (470)
.....+..+||+|++-.
T Consensus 73 ~~d~~~~~~l~~~~~Dliv~ag 94 (209)
T 4ds3_A 73 AHEDAILAALDVLKPDIICLAG 94 (209)
T ss_dssp HHHHHHHHHHHHHCCSEEEESS
T ss_pred HHHHHHHHHHHhcCCCEEEEec
Confidence 12344668999999875
No 90
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=81.03 E-value=2.5 Score=35.39 Aligned_cols=40 Identities=13% Similarity=-0.012 Sum_probs=31.4
Q ss_pred ccEEEEEeeccCCCch-hHHHHHHHHH-HHhCCceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGG-PLLLMELAFL-LRGVGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~-~~~~~~l~~~-L~~~G~~V~v~~~~ 113 (470)
||||+++..+...+|. ...+..+++. |.+.|++|.++-..
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~ 43 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVI 43 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGG
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 5799999876655565 6777888888 89899999998743
No 91
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=80.89 E-value=8.2 Score=29.06 Aligned_cols=111 Identities=12% Similarity=0.149 Sum_probs=70.2
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH---hcCEEEEccCCcccccchHHHHHHhc---
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---AIDVLVQNSQAWGECFGRITIEAMAF--- 381 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~---~aDv~v~pS~~~~E~~g~~~lEAma~--- 381 (470)
..+++|+.+.. .....+++..++.|.. .+.......+....+. ..|++++-.. -.+.-|+.+++.+..
T Consensus 5 ~~~iLivdd~~----~~~~~l~~~L~~~g~~-~v~~~~~~~~a~~~~~~~~~~dlvi~D~~-~p~~~g~~~~~~lr~~~~ 78 (129)
T 3h1g_A 5 SMKLLVVDDSS----TMRRIIKNTLSRLGYE-DVLEAEHGVEAWEKLDANADTKVLITDWN-MPEMNGLDLVKKVRSDSR 78 (129)
T ss_dssp -CCEEEECSCH----HHHHHHHHHHHHTTCC-CEEEESSHHHHHHHHHHCTTCCEEEECSC-CSSSCHHHHHHHHHTSTT
T ss_pred CcEEEEEeCCH----HHHHHHHHHHHHcCCc-EEEEeCCHHHHHHHHHhCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCC
Confidence 45678887752 4677788888887754 3444443333333332 3678776433 134456778877753
Q ss_pred --CCCEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 382 --QLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 382 --G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
.+|+|... ... ..+.+..|..+++..|-+ .++|.++|..++..
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 79 FKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFT--PQVLKEKLEVVLGT 127 (129)
T ss_dssp CTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCC--HHHHHHHHHHHHCC
T ss_pred CCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCC--HHHHHHHHHHHhcc
Confidence 57877543 222 233455678899999988 99999999988753
No 92
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=80.82 E-value=12 Score=29.17 Aligned_cols=112 Identities=9% Similarity=0.123 Sum_probs=67.6
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHh---cC
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQ 382 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G 382 (470)
..+++|+.+.. .....+.....+.|. .|.......+....+. ..|++++-..- .+.-|..+++.+. .+
T Consensus 3 ~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dliild~~l-~~~~g~~~~~~l~~~~~~ 75 (155)
T 1qkk_A 3 APSVFLIDDDR----DLRKAMQQTLELAGF--TVSSFASATEALAGLSADFAGIVISDIRM-PGMDGLALFRKILALDPD 75 (155)
T ss_dssp -CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHTCCTTCCSEEEEESCC-SSSCHHHHHHHHHHHCTT
T ss_pred CCEEEEEeCCH----HHHHHHHHHHHHcCc--EEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhhCCC
Confidence 35677777652 456777777777664 3544333333333332 35887765431 3334556665553 46
Q ss_pred CCEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhCHH
Q 012132 383 LPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 428 (470)
Q Consensus 383 ~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~ 428 (470)
+|+|... ... ..+.+..|..+++..|.+ .++|..+|..++....
T Consensus 76 ~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~--~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 76 LPMILVTGHGDIPMAVQAIQDGAYDFIAKPFA--ADRLVQSARRAEEKRR 123 (155)
T ss_dssp SCEEEEECGGGHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHhcCCCeEEeCCCC--HHHHHHHHHHHHHHHH
Confidence 8887543 222 233445677899999988 9999999999876433
No 93
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=80.57 E-value=6 Score=35.87 Aligned_cols=79 Identities=14% Similarity=0.116 Sum_probs=46.0
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhH----HHhhhhhhhhcceeeEecCCh-----h
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEV----IYSLEHKMWDRGVQVISAKGQ-----E 143 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-----~ 143 (470)
++|||+|+.+. .+.....++|.+.||+|..+...++.+.... ...........|++++..... .
T Consensus 2 ~~mrIvf~Gt~-------~fa~~~L~~L~~~~~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~ 74 (314)
T 1fmt_A 2 ESLRIIFAGTP-------DFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQ 74 (314)
T ss_dssp CCCEEEEEECS-------HHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHH
T ss_pred CCCEEEEEecC-------HHHHHHHHHHHHCCCcEEEEEeCCCCccccccccCcCHHHHHHHHcCCcEEecCCCCCHHHH
Confidence 35899999862 2444555666677999875554432221110 012344556778887654332 2
Q ss_pred hHHhhcCCcEEEEcc
Q 012132 144 TINTALKADLIVLNT 158 (470)
Q Consensus 144 ~~~~~~~~DiV~~~~ 158 (470)
...+..+||++++-.
T Consensus 75 ~~l~~~~~Dliv~~~ 89 (314)
T 1fmt_A 75 QLVAELQADVMVVVA 89 (314)
T ss_dssp HHHHHTTCSEEEEES
T ss_pred HHHHhcCCCEEEEee
Confidence 344678999998864
No 94
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=80.32 E-value=8.2 Score=32.66 Aligned_cols=74 Identities=11% Similarity=0.066 Sum_probs=46.4
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhC--CceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC----------
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG---------- 141 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 141 (470)
||||.++.. |....+..+.++|.+. +++|..+....+.. .........|++++....
T Consensus 3 m~ki~vl~s-----G~g~~~~~~l~~l~~~~l~~~I~~Vit~~~~~------~v~~~A~~~gIp~~~~~~~~~~~~~~~~ 71 (212)
T 3av3_A 3 MKRLAVFAS-----GSGTNFQAIVDAAKRGDLPARVALLVCDRPGA------KVIERAARENVPAFVFSPKDYPSKAAFE 71 (212)
T ss_dssp CEEEEEECC-----SSCHHHHHHHHHHHTTCCCEEEEEEEESSTTC------HHHHHHHHTTCCEEECCGGGSSSHHHHH
T ss_pred CcEEEEEEE-----CCcHHHHHHHHHHHhCCCCCeEEEEEeCCCCc------HHHHHHHHcCCCEEEeCcccccchhhhH
Confidence 367877764 3345677888888876 68886655443322 134455677888764321
Q ss_pred --hhhHHhhcCCcEEEEcc
Q 012132 142 --QETINTALKADLIVLNT 158 (470)
Q Consensus 142 --~~~~~~~~~~DiV~~~~ 158 (470)
.....+..+||+|++-.
T Consensus 72 ~~~~~~l~~~~~Dliv~a~ 90 (212)
T 3av3_A 72 SEILRELKGRQIDWIALAG 90 (212)
T ss_dssp HHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHhcCCCEEEEch
Confidence 12334568999999865
No 95
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=79.81 E-value=5.6 Score=36.62 Aligned_cols=93 Identities=17% Similarity=0.113 Sum_probs=61.1
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccC
Q 012132 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348 (470)
Q Consensus 269 ~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~ 348 (470)
..+.++.+|-=. =|....+.++.. .|+++++-+.+. ..+..+++++++|++. + .+
T Consensus 22 ~mirigiIG~G~--ig~~~~~~~~~~-----------~~~~~lvav~d~------~~~~a~~~a~~~g~~~-~-----y~ 76 (350)
T 4had_A 22 SMLRFGIISTAK--IGRDNVVPAIQD-----------AENCVVTAIASR------DLTRAREMADRFSVPH-A-----FG 76 (350)
T ss_dssp CCEEEEEESCCH--HHHHTHHHHHHH-----------CSSEEEEEEECS------SHHHHHHHHHHHTCSE-E-----ES
T ss_pred CccEEEEEcChH--HHHHHHHHHHHh-----------CCCeEEEEEECC------CHHHHHHHHHHcCCCe-e-----eC
Confidence 446788887311 111223445543 288998866664 3566788888888641 1 25
Q ss_pred CHHHHHHh--cCEEEEccCCcccccchHHHHHHhcCCCEEec
Q 012132 349 TVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 388 (470)
Q Consensus 349 ~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s 388 (470)
++.++++. .|+++..+- ...-.-.+.+|+..|++|++=
T Consensus 77 d~~ell~~~~iDaV~I~tP--~~~H~~~~~~al~aGkhVl~E 116 (350)
T 4had_A 77 SYEEMLASDVIDAVYIPLP--TSQHIEWSIKAADAGKHVVCE 116 (350)
T ss_dssp SHHHHHHCSSCSEEEECSC--GGGHHHHHHHHHHTTCEEEEC
T ss_pred CHHHHhcCCCCCEEEEeCC--CchhHHHHHHHHhcCCEEEEe
Confidence 77788865 688888876 444445678899999999974
No 96
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=79.80 E-value=1.9 Score=36.06 Aligned_cols=38 Identities=16% Similarity=0.099 Sum_probs=30.6
Q ss_pred cccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecC
Q 012132 73 KSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
++|||+++..+ .|. ...+..+++.+.+.|++|.++...
T Consensus 3 ~mmkilii~~S---~g~T~~la~~i~~~l~~~g~~v~~~~l~ 41 (199)
T 2zki_A 3 CKPNILVLFYG---YGSIVELAKEIGKGAEEAGAEVKIRRVR 41 (199)
T ss_dssp CCCEEEEEECC---SSHHHHHHHHHHHHHHHHSCEEEEEECC
T ss_pred CCcEEEEEEeC---ccHHHHHHHHHHHHHHhCCCEEEEEehh
Confidence 35799999876 454 788888999999899999998754
No 97
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=79.28 E-value=8.4 Score=33.38 Aligned_cols=86 Identities=9% Similarity=0.003 Sum_probs=43.6
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCc-----hhHHHhhhhhhhhcceee---EecC---
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEE-----DEVIYSLEHKMWDRGVQV---ISAK--- 140 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~~~~--- 140 (470)
|++++||+|+... .-.+..+--....+.+.|++|.+++...+... .....+........|+.. +...
T Consensus 1 ~~~~~vL~v~aHP--DDe~l~~Ggtia~~~~~G~~V~vv~lT~G~~g~~~~~~~R~~E~~~A~~~LGv~~~~~L~~~D~~ 78 (242)
T 2ixd_A 1 MSGLHILAFGAHA--DDVEIGMAGTIAKYTKQGYEVGICDLTEADLSSNGTIELRKEEAKVAARIMGVKTRLNLAMPDRG 78 (242)
T ss_dssp -CCCSEEEEESST--THHHHHHHHHHHHHHHTTCCEEEEEEECCTTCSSSCHHHHHHHHHHHHHHHTCCEEEEEEECTTC
T ss_pred CCCccEEEEEeCC--ChHHHhHHHHHHHHHHCCCeEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHcCCCeEEECCCCCCC
Confidence 4567899988542 22222222334455678999998884333221 111222333334445442 1111
Q ss_pred ---------ChhhHHhhcCCcEEEEccc
Q 012132 141 ---------GQETINTALKADLIVLNTA 159 (470)
Q Consensus 141 ---------~~~~~~~~~~~DiV~~~~~ 159 (470)
....+++..+||+|+++++
T Consensus 79 ~~~~~~~~~~l~~~ir~~~PdvV~t~~~ 106 (242)
T 2ixd_A 79 LYMKEEYIREIVKVIRTYKPKLVFAPYY 106 (242)
T ss_dssp CCCCHHHHHHHHHHHHHHCCSEEEEECS
T ss_pred CCChHHHHHHHHHHHHHcCCCEEEECCC
Confidence 1224456688999888753
No 98
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=79.17 E-value=13 Score=28.83 Aligned_cols=111 Identities=10% Similarity=0.137 Sum_probs=67.6
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH---------hcCEEEEccCCcccccchHHHH
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---------AIDVLVQNSQAWGECFGRITIE 377 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~---------~aDv~v~pS~~~~E~~g~~~lE 377 (470)
...+++|+.+.. .....++...+..+....|.......+...++. ..|++++-..- .+.-|..+++
T Consensus 7 ~~~~ILivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~l-p~~~g~~l~~ 81 (149)
T 1i3c_A 7 PPKVILLVEDSK----ADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNL-PKKDGREVLA 81 (149)
T ss_dssp CCEEEEEECCCH----HHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCC-SSSCHHHHHH
T ss_pred CCCeEEEEECCH----HHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCC-CCCcHHHHHH
Confidence 346778887752 356667777776554323444443344445554 36888864431 2334666777
Q ss_pred HHh-----cCCCEEec-CCCC---cceeeecCceeeeecCCCCChHHHHHHHHHHH
Q 012132 378 AMA-----FQLPVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 424 (470)
Q Consensus 378 Ama-----~G~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 424 (470)
.+. ..+|+|.. .... ..+....|..|++..|-+ .++|.++|..++
T Consensus 82 ~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~~ 135 (149)
T 1i3c_A 82 EIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRN--LKDLFKMVQGIE 135 (149)
T ss_dssp HHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHH
T ss_pred HHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCC--HHHHHHHHHHHH
Confidence 664 35677654 3222 233445677899999988 999999888764
No 99
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=78.82 E-value=13 Score=28.38 Aligned_cols=111 Identities=9% Similarity=-0.019 Sum_probs=71.7
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--------cCEEEEccCCcccccchHHHHHH
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--------IDVLVQNSQAWGECFGRITIEAM 379 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--------aDv~v~pS~~~~E~~g~~~lEAm 379 (470)
..+++|+.+.. .....+++..++.|....|.......+....+.. .|++++-..- .+.-|..+++.+
T Consensus 7 ~~~ILivdd~~----~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l-~~~~g~~~~~~l 81 (143)
T 2qvg_A 7 KVDILYLEDDE----VDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINI-PKMNGIEFLKEL 81 (143)
T ss_dssp CCSEEEECCCH----HHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTC-TTSCHHHHHHHH
T ss_pred CCeEEEEeCCH----HHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCC-CCCCHHHHHHHH
Confidence 45678887752 4677788888887764457666655566666643 6888865431 333466777776
Q ss_pred h-----cCCCEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 380 A-----FQLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 380 a-----~G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
. ..+|+|... ... ..+....|..+++..|-+ .++|.+++.....
T Consensus 82 ~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~--~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 82 RDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLD--YGEAIKLFWILQS 134 (143)
T ss_dssp TTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCC--HHHHHHHHHHHHH
T ss_pred HcCccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCC--HHHHHHHHHHHHH
Confidence 5 467777542 222 233445577899999988 9999998765443
No 100
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=78.71 E-value=11 Score=29.59 Aligned_cols=108 Identities=8% Similarity=0.097 Sum_probs=63.4
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEE-EecccCCHHHHHH----hcCEEEEccCCcccccchHHHHHHh---
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLTVAPYLA----AIDVLVQNSQAWGECFGRITIEAMA--- 380 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~-~~g~~~~~~~~~~----~aDv~v~pS~~~~E~~g~~~lEAma--- 380 (470)
.+++|+.+.. .....+++..++.|. .+. ......+....+. ..|++++-..- .+.-|+.+++.+.
T Consensus 37 ~~Ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~~al~~l~~~~~~~dliilD~~l-~~~~g~~~~~~lr~~~ 109 (157)
T 3hzh_A 37 FNVLIVDDSV----FTVKQLTQIFTSEGF--NIIDTAADGEEAVIKYKNHYPNIDIVTLXITM-PKMDGITCLSNIMEFD 109 (157)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGGCCEEEECSSC-SSSCHHHHHHHHHHHC
T ss_pred eEEEEEeCCH----HHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHhcCCCCCEEEEeccC-CCccHHHHHHHHHhhC
Confidence 4667766642 355666666666553 232 2233333334433 34887765441 3444566665553
Q ss_pred cCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 381 FQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 381 ~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
..+|||...... ..+....|..+++..|-+ .++|.++|.+++.
T Consensus 110 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 110 KNARVIMISALGKEQLVKDCLIKGAKTFIVKPLD--RAKVLQRVMSVFV 156 (157)
T ss_dssp TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHTTC
T ss_pred CCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHhc
Confidence 467777543222 233445677889999988 9999999988764
No 101
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=77.73 E-value=3.1 Score=31.16 Aligned_cols=39 Identities=13% Similarity=0.231 Sum_probs=30.3
Q ss_pred cEEEEEeeccCCCch-hHHHHHHHHHHHhC-Cc-eEEEEecC
Q 012132 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGV-GT-KVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~-G~-~V~v~~~~ 113 (470)
||++++.+..+.+.. ......++..+.+. |+ +|.|+...
T Consensus 2 ~k~~ii~~~~p~~~~~~~~al~~a~~~~~~~g~~~v~vff~~ 43 (117)
T 1jx7_A 2 QKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMS 43 (117)
T ss_dssp CEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEECG
T ss_pred cEEEEEEcCCCCCcHHHHHHHHHHHHHHhcCCCccEEEEEEc
Confidence 588888887665433 46689999999999 99 99988744
No 102
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=77.44 E-value=12 Score=29.05 Aligned_cols=112 Identities=9% Similarity=0.079 Sum_probs=63.8
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhc---C
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF---Q 382 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~---G 382 (470)
-.+++|+.+.. .....++...++.+-...|.......+....+. ..|++++-..- .+.-|+.+++.+.. .
T Consensus 20 m~~iLivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l-~~~~g~~~~~~l~~~~~~ 94 (150)
T 4e7p_A 20 HMKVLVAEDQS----MLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEM-PVKTGLEVLEWIRSEKLE 94 (150)
T ss_dssp CEEEEEECSCH----HHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSC-SSSCHHHHHHHHHHTTCS
T ss_pred ccEEEEEcCCH----HHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCC-CCCcHHHHHHHHHHhCCC
Confidence 35666666542 345555555554431112333333333333332 24777765431 34456666666543 5
Q ss_pred CCEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 383 LPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 383 ~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
+|+|... ... ..+.+..|..+++..|-+ .++|.++|..++..
T Consensus 95 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~--~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 95 TKVVVVTTFKRAGYFERAVKAGVDAYVLKERS--IADLMQTLHTVLEG 140 (150)
T ss_dssp CEEEEEESCCCHHHHHHHHHTTCSEEEETTSC--HHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCHHHHHHHHHCCCcEEEecCCC--HHHHHHHHHHHHcC
Confidence 6766543 222 334455678899999988 99999999999874
No 103
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=77.13 E-value=17 Score=28.25 Aligned_cols=112 Identities=12% Similarity=0.128 Sum_probs=68.5
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHh---c
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---F 381 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma---~ 381 (470)
...+++|+.+.. .....+....+..|. .|.......+....+.. .|++++-..- .+.-|..+++.+. .
T Consensus 6 ~~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~ 78 (154)
T 2rjn_A 6 KNYTVMLVDDEQ----PILNSLKRLIKRLGC--NIITFTSPLDALEALKGTSVQLVISDMRM-PEMGGEVFLEQVAKSYP 78 (154)
T ss_dssp SCCEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESCHHHHHHHHTTSCCSEEEEESSC-SSSCHHHHHHHHHHHCT
T ss_pred CCCeEEEEcCCH----HHHHHHHHHHHHcCC--eEEEeCCHHHHHHHHhcCCCCEEEEecCC-CCCCHHHHHHHHHHhCC
Confidence 456788888752 456777777776654 35544443444444433 5888765431 3334556665553 3
Q ss_pred CCCEEecC-CCC---cceeeecC-ceeeeecCCCCChHHHHHHHHHHHhCH
Q 012132 382 QLPVLGTA-AGG---TTEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATHV 427 (470)
Q Consensus 382 G~PvI~s~-~~g---~~e~v~~~-~~G~l~~~~d~~~~~la~~i~~ll~~~ 427 (470)
.+|+|... ... ..+.+..| ..+++..|-+ .++|..+|..++...
T Consensus 79 ~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~--~~~L~~~i~~~~~~~ 127 (154)
T 2rjn_A 79 DIERVVISGYADAQATIDAVNRGKISRFLLKPWE--DEDVFKVVEKGLQLA 127 (154)
T ss_dssp TSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCC--HHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCHHHHHHHHhccchheeeeCCCC--HHHHHHHHHHHHHHH
Confidence 67777542 222 22333344 6789999988 999999999887643
No 104
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=77.13 E-value=11 Score=28.60 Aligned_cols=109 Identities=11% Similarity=0.124 Sum_probs=66.7
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHhc--CC
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF--QL 383 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~--G~ 383 (470)
..+++|+.+.. .....++...+..|. .|.......+....+.. .|++++-..- .+.-|+.+++.+.. .+
T Consensus 4 ~~~Ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvllD~~l-~~~~g~~l~~~l~~~~~~ 76 (136)
T 2qzj_A 4 QTKILIIDGDK----DNCQKLKGFLEEKGI--SIDLAYNCEEAIGKIFSNKYDLIFLEIIL-SDGDGWTLCKKIRNVTTC 76 (136)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHHHCCCSEEEEESEE-TTEEHHHHHHHHHTTCCC
T ss_pred CCeEEEEcCCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHccCCCC
Confidence 45778887752 356667777776553 34443333444444433 5887764330 23345667766643 57
Q ss_pred CEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 384 PVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 384 PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
|+|... ... ..+.+..|..+++..|-+ .++|..++..++.
T Consensus 77 ~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 77 PIVYMTYINEDQSILNALNSGGDDYLIKPLN--LEILYAKVKAILR 120 (136)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHcCCcEEEECCCC--HHHHHHHHHHHHH
Confidence 777542 222 233445677899999988 9999999988765
No 105
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=77.06 E-value=53 Score=31.45 Aligned_cols=128 Identities=9% Similarity=0.088 Sum_probs=71.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcC---------------hHHHHHHHHHHHhcCCCCcEEEecc
Q 012132 282 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ---------------TKFESELRNYVMQKKIQDRVHFVNK 346 (470)
Q Consensus 282 ~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~---------------~~~~~~l~~~~~~~~l~~~V~~~g~ 346 (470)
.+.++.+.+.+... ..+.-+++|+|+|.-+. ....+..+.+++++ ++-+.+.|.
T Consensus 218 ~~~i~~~~~~~g~~---------~~~~~~v~I~GgG~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l--~~~~Vi~GD 286 (461)
T 4g65_A 218 SNHIRSVMSELQRL---------EKPYRRIMIVGGGNIGASLAKRLEQTYSVKLIERNLQRAEKLSEEL--ENTIVFCGD 286 (461)
T ss_dssp TTTHHHHHHHTTGG---------GSCCCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHC--TTSEEEESC
T ss_pred cchHHHHHHhhccc---------cccccEEEEEcchHHHHHHHHHhhhcCceEEEecCHHHHHHHHHHC--CCceEEecc
Confidence 45676666665432 11344778888772100 00234455555554 345666776
Q ss_pred cCCHHH----HHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCC--CCcceeeecCceeeeecCCCCChHHHHHHH
Q 012132 347 TLTVAP----YLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA--GGTTEIVVNGTTGLLHPVGKEGITPLAKNI 420 (470)
Q Consensus 347 ~~~~~~----~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~--~g~~e~v~~~~~G~l~~~~d~~~~~la~~i 420 (470)
-.+..- =+..+|+++..+.. .|.-=++.+-|--+|++=+.+.. +...++++..+...++.| ....+..|
T Consensus 287 ~td~~~L~ee~i~~~D~~ia~T~~-De~Ni~~~llAk~~gv~kvIa~vn~~~~~~l~~~~gid~visp----~~~~a~~I 361 (461)
T 4g65_A 287 AADQELLTEENIDQVDVFIALTNE-DETNIMSAMLAKRMGAKKVMVLIQRGAYVDLVQGGVIDVAISP----QQATISAL 361 (461)
T ss_dssp TTCHHHHHHTTGGGCSEEEECCSC-HHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHCSSSSCEEECH----HHHHHHHH
T ss_pred ccchhhHhhcCchhhcEEEEcccC-cHHHHHHHHHHHHcCCccccccccccchhhhhhccccceeeCH----HHHHHHHH
Confidence 544322 25788999987763 45444566678888988776643 334455544333445543 34556666
Q ss_pred HHHHh
Q 012132 421 VKLAT 425 (470)
Q Consensus 421 ~~ll~ 425 (470)
.+.+.
T Consensus 362 ~~~i~ 366 (461)
T 4g65_A 362 LTHVR 366 (461)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 66654
No 106
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=76.85 E-value=18 Score=28.20 Aligned_cols=110 Identities=13% Similarity=0.157 Sum_probs=70.4
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHh----
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---- 380 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma---- 380 (470)
...+++|+.+.. .....+++..++.|. .|.......+....+.. .|++++-..- .+.-|+.+++.+.
T Consensus 6 ~~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~dlii~D~~l-~~~~g~~~~~~lr~~~~ 78 (154)
T 3gt7_A 6 RAGEILIVEDSP----TQAEHLKHILEETGY--QTEHVRNGREAVRFLSLTRPDLIISDVLM-PEMDGYALCRWLKGQPD 78 (154)
T ss_dssp -CCEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHTTCCCSEEEEESCC-SSSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEeCCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhCCC
Confidence 356788887752 466777787777664 35444433444444433 5888775441 3445677777664
Q ss_pred -cCCCEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 381 -FQLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 381 -~G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
..+|+|... ... ..+.+..|..+++..|-+ .++|..+|..++.
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~l~ 126 (154)
T 3gt7_A 79 LRTIPVILLTILSDPRDVVRSLECGADDFITKPCK--DVVLASHVKRLLS 126 (154)
T ss_dssp TTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCC--HHHHHHHHHHHHH
Confidence 467877543 222 233445678899999988 9999999999886
No 107
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=76.66 E-value=3.8 Score=31.01 Aligned_cols=40 Identities=8% Similarity=-0.019 Sum_probs=32.1
Q ss_pred cEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecCC
Q 012132 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
+|++|+.+..|.|.. .+-..+++.++...||+|.|+-...
T Consensus 2 kk~~~vv~~~P~g~~~~~~al~~a~a~~a~~~~v~vff~~D 42 (119)
T 2d1p_B 2 KRIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFIAD 42 (119)
T ss_dssp CCEEEEECSCTTTSTHHHHHHHHHHHHHTTCSCEEEEECGG
T ss_pred cEEEEEEcCCCCCcHHHHHHHHHHHHHHhCCCCEEEEEehH
Confidence 579999887777554 4778899999999999999987543
No 108
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=76.39 E-value=22 Score=26.94 Aligned_cols=112 Identities=17% Similarity=0.178 Sum_probs=70.7
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHh-cCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHhc--
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF-- 381 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~-~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~-- 381 (470)
...+++|+.+.. .....++...++ .|.. .|.......+....+.. .|++++-... .+.-|..+++.+..
T Consensus 7 ~~~~iLivdd~~----~~~~~l~~~L~~~~~~~-~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~ 80 (143)
T 3cnb_A 7 NDFSILIIEDDK----EFADMLTQFLENLFPYA-KIKIAYNPFDAGDLLHTVKPDVVMLDLMM-VGMDGFSICHRIKSTP 80 (143)
T ss_dssp --CEEEEECSCH----HHHHHHHHHHHHHCTTC-EEEEECSHHHHHHHHHHTCCSEEEEETTC-TTSCHHHHHHHHHTST
T ss_pred CCceEEEEECCH----HHHHHHHHHHHhccCcc-EEEEECCHHHHHHHHHhcCCCEEEEeccc-CCCcHHHHHHHHHhCc
Confidence 356788887752 456777777777 6652 25554444455555443 5888875441 34456677777654
Q ss_pred ---CCCEEec-CCCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 382 ---QLPVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 382 ---G~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
.+|+|.. .... ..+.+..|..+++..|-+ .++|.++|..++..
T Consensus 81 ~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 81 ATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLN--FTLLEKTIKQLVEQ 130 (143)
T ss_dssp TTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHHT
T ss_pred cccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCC--HHHHHHHHHHHHHh
Confidence 5677753 3332 233445677899999988 99999999998864
No 109
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=76.36 E-value=21 Score=27.00 Aligned_cols=109 Identities=11% Similarity=-0.001 Sum_probs=62.1
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHh-----c
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA-----F 381 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma-----~ 381 (470)
.+++|+.+.. .....+++..++. -.|.......+....+. ..|++++-..- .+.-|..+++.+. .
T Consensus 4 ~~iLivdd~~----~~~~~l~~~l~~~---~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~ 75 (140)
T 3n53_A 4 KKILIIDQQD----FSRIELKNFLDSE---YLVIESKNEKEALEQIDHHHPDLVILDMDI-IGENSPNLCLKLKRSKGLK 75 (140)
T ss_dssp CEEEEECSCH----HHHHHHHHHHTTT---SEEEEESSHHHHHHHHHHHCCSEEEEETTC-------CHHHHHHTSTTCT
T ss_pred CEEEEEeCCH----HHHHHHHHHHHhc---ceEEEeCCHHHHHHHHhcCCCCEEEEeCCC-CCCcHHHHHHHHHcCcccC
Confidence 4667776652 3455566666543 23444433334444432 35887765431 3444666776665 4
Q ss_pred CCCEEecCCC----CcceeeecCceeeeecCCCCChHHHHHHHHHHHhCH
Q 012132 382 QLPVLGTAAG----GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 427 (470)
Q Consensus 382 G~PvI~s~~~----g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 427 (470)
++|+|..... ...+.+..|..+++..|-+ .++|.++|..++...
T Consensus 76 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~~~ 123 (140)
T 3n53_A 76 NVPLILLFSSEHKEAIVNGLHSGADDYLTKPFN--RNDLLSRIEIHLRTQ 123 (140)
T ss_dssp TCCEEEEECC----CTTTTTTCCCSEEEESSCC--HHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCC--HHHHHHHHHHHHhhH
Confidence 6787754222 2334455577899999988 999999999887643
No 110
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=76.18 E-value=14 Score=28.65 Aligned_cols=114 Identities=15% Similarity=0.080 Sum_probs=69.4
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHH--HhcCEEEEccCCcccccchHHHHHHhc---
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAF--- 381 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~--~~aDv~v~pS~~~~E~~g~~~lEAma~--- 381 (470)
...+++|+.+.. .....+++..++.+....|.......+....+ ...|++++-..- .+.-|+.+++.+..
T Consensus 14 ~~~~iLivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~ 88 (152)
T 3eul_A 14 EKVRVVVGDDHP----LFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRM-PGMDGAQVAAAVRSYEL 88 (152)
T ss_dssp CCEEEEEECSSH----HHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTC-SSSCHHHHHHHHHHTTC
T ss_pred ceEEEEEEcCCH----HHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhcCC
Confidence 567788887752 35666777777765221232233333444443 235887765431 34456667766543
Q ss_pred CCCEEec-CCCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhCH
Q 012132 382 QLPVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 427 (470)
Q Consensus 382 G~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 427 (470)
.+|||.. .... ..+.+..|..|++..|.+ .++|.++|..++...
T Consensus 89 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~--~~~l~~~i~~~~~~~ 136 (152)
T 3eul_A 89 PTRVLLISAHDEPAIVYQALQQGAAGFLLKDST--RTEIVKAVLDCAKGR 136 (152)
T ss_dssp SCEEEEEESCCCHHHHHHHHHTTCSEEEETTCC--HHHHHHHHHHHHHCC
T ss_pred CCeEEEEEccCCHHHHHHHHHcCCCEEEecCCC--HHHHHHHHHHHHcCC
Confidence 5667654 3222 234455678899999988 999999999998753
No 111
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=75.80 E-value=4.4 Score=35.33 Aligned_cols=43 Identities=21% Similarity=0.119 Sum_probs=33.4
Q ss_pred cccccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecC
Q 012132 71 FMKSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
.+++|||++|..+...+|. ...+..+++.+.+.|++|.++-..
T Consensus 31 ~~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~ 74 (247)
T 2q62_A 31 STHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPS 74 (247)
T ss_dssp CCSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCT
T ss_pred cCCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhh
Confidence 4567899999987666665 566777888888889999998743
No 112
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=75.45 E-value=12 Score=31.96 Aligned_cols=96 Identities=9% Similarity=0.059 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCC--CcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEE
Q 012132 285 QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM--NAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 362 (470)
Q Consensus 285 ~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~--~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~ 362 (470)
++.+.+++.++.+ .+.++.|+..+. ...+.+...+.+..+++|. .+..+-..++..+.+..+|.+++
T Consensus 17 l~~~~~~l~~~~~---------~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~--~~~~v~~~~d~~~~l~~ad~I~l 85 (229)
T 1fy2_A 17 LEHALPLIANQLN---------GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGV--NVTGIHRVADPLAAIEKAEIIIV 85 (229)
T ss_dssp TTTTHHHHHHHHT---------TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTC--EEEETTSSSCHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHhc---------CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCC--EEEEEeccccHHHHHhcCCEEEE
Confidence 5455666665543 346788887653 2222356666777777775 34444333566688999999999
Q ss_pred ccCC--------cccccchHHHHHHhcCCCEEecCCC
Q 012132 363 NSQA--------WGECFGRITIEAMAFQLPVLGTAAG 391 (470)
Q Consensus 363 pS~~--------~~E~~g~~~lEAma~G~PvI~s~~~ 391 (470)
|-=. ..-++--.+-|+...|+|++.+..|
T Consensus 86 pGG~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG 122 (229)
T 1fy2_A 86 GGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAG 122 (229)
T ss_dssp CCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHH
T ss_pred CCCcHHHHHHHHHHCChHHHHHHHHHcCCEEEEECHH
Confidence 8621 0112334566788899999988655
No 113
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=75.24 E-value=5.1 Score=35.46 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=39.0
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
|+|||+++.. ...-..+++.|.++||+|.+++..... ...+...++.++...... +. ..++|
T Consensus 4 m~~~ilVtGa-------G~iG~~l~~~L~~~g~~V~~~~r~~~~---------~~~~~~~~~~~~~~D~~d-~~-~~~~d 65 (286)
T 3ius_A 4 MTGTLLSFGH-------GYTARVLSRALAPQGWRIIGTSRNPDQ---------MEAIRASGAEPLLWPGEE-PS-LDGVT 65 (286)
T ss_dssp -CCEEEEETC-------CHHHHHHHHHHGGGTCEEEEEESCGGG---------HHHHHHTTEEEEESSSSC-CC-CTTCC
T ss_pred CcCcEEEECC-------cHHHHHHHHHHHHCCCEEEEEEcChhh---------hhhHhhCCCeEEEecccc-cc-cCCCC
Confidence 3578888741 245667888999999999999854321 112222445554432221 11 45788
Q ss_pred EEEEcc
Q 012132 153 LIVLNT 158 (470)
Q Consensus 153 iV~~~~ 158 (470)
+|+...
T Consensus 66 ~vi~~a 71 (286)
T 3ius_A 66 HLLIST 71 (286)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 776543
No 114
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=75.10 E-value=3.8 Score=34.75 Aligned_cols=41 Identities=12% Similarity=-0.010 Sum_probs=30.7
Q ss_pred cccEEEEEeeccC--CCch-hHHHHHHHHHHHhC--CceEEEEecC
Q 012132 73 KSKLVLLVSHELS--LSGG-PLLLMELAFLLRGV--GTKVNWITIQ 113 (470)
Q Consensus 73 ~~~kIl~v~~~~~--~~G~-~~~~~~l~~~L~~~--G~~V~v~~~~ 113 (470)
||||||+|..+.. .++- ...+..+++.+.+. |++|.++-..
T Consensus 3 mM~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~ 48 (211)
T 3p0r_A 3 AMTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLY 48 (211)
T ss_dssp -CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGG
T ss_pred ccCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 4689999998766 4554 46677788888877 8999998744
No 115
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=74.92 E-value=8.9 Score=29.29 Aligned_cols=111 Identities=8% Similarity=-0.008 Sum_probs=70.2
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHh-cCCCCcEEEecccCCHHHHHHh---cCEEEEccCCcc-cccchHHHHHHhc-
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQDRVHFVNKTLTVAPYLAA---IDVLVQNSQAWG-ECFGRITIEAMAF- 381 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~-~~l~~~V~~~g~~~~~~~~~~~---aDv~v~pS~~~~-E~~g~~~lEAma~- 381 (470)
..+++|+.+.. .....++...++ .|. .|.......+....+.. .|++++-..- . +.-|..+++.+..
T Consensus 4 ~~~ilivdd~~----~~~~~l~~~L~~~~~~--~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l-~~~~~g~~~~~~l~~~ 76 (140)
T 3lua_A 4 DGTVLLIDYFE----YEREKTKIIFDNIGEY--DFIEVENLKKFYSIFKDLDSITLIIMDIAF-PVEKEGLEVLSAIRNN 76 (140)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHHHHCCC--EEEEECSHHHHHTTTTTCCCCSEEEECSCS-SSHHHHHHHHHHHHHS
T ss_pred CCeEEEEeCCH----HHHHHHHHHHHhccCc--cEEEECCHHHHHHHHhcCCCCcEEEEeCCC-CCCCcHHHHHHHHHhC
Confidence 35777887752 356777777777 654 35444433444444433 6888875541 3 3446667766544
Q ss_pred ----CCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHHHHHHhCH
Q 012132 382 ----QLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 427 (470)
Q Consensus 382 ----G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 427 (470)
.+|+|...... ..+.+..|..+++..|-+ .++|.++|..++...
T Consensus 77 ~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 77 SRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYP--TKRLENSVRSVLKIC 128 (140)
T ss_dssp GGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCC--TTHHHHHHHHHHCC-
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCC--HHHHHHHHHHHHHhc
Confidence 78887643222 233445677899999988 999999999998754
No 116
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=74.81 E-value=18 Score=26.63 Aligned_cols=108 Identities=11% Similarity=0.083 Sum_probs=67.8
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcc-cccchHHHHHHh-----
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWG-ECFGRITIEAMA----- 380 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~-E~~g~~~lEAma----- 380 (470)
.+++|+.+.. .....+++..++.|. .|.......+....+. ..|++++-... . +.-|..+++.+.
T Consensus 6 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~~dlvi~d~~~-~~~~~g~~~~~~l~~~~~~ 78 (127)
T 2gkg_A 6 KKILIVESDT----ALSATLRSALEGRGF--TVDETTDGKGSVEQIRRDRPDLVVLAVDL-SAGQNGYLICGKLKKDDDL 78 (127)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHHTC--EEEEECCHHHHHHHHHHHCCSEEEEESBC-GGGCBHHHHHHHHHHSTTT
T ss_pred CeEEEEeCCH----HHHHHHHHHHHhcCc--eEEEecCHHHHHHHHHhcCCCEEEEeCCC-CCCCCHHHHHHHHhcCccc
Confidence 4677777652 356677777777665 3544443344444443 35887764431 2 334666776664
Q ss_pred cCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 381 FQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 381 ~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
..+|+|.. ... ..+....|..+++..|-+ .++|.+.|..++..
T Consensus 79 ~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 79 KNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVD--ADQLVERAGALIGF 125 (127)
T ss_dssp TTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCC--HHHHHHHHHHHHCC
T ss_pred cCCCEEEE-ecCCchhHHHHHHhCcchheeCCCC--HHHHHHHHHHHHcC
Confidence 46888877 332 233445577889999988 99999999888754
No 117
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=74.70 E-value=27 Score=26.91 Aligned_cols=111 Identities=11% Similarity=0.085 Sum_probs=66.6
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh---cCEEEEccCCcccccchHHHHHHh---c
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA---IDVLVQNSQAWGECFGRITIEAMA---F 381 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~---aDv~v~pS~~~~E~~g~~~lEAma---~ 381 (470)
..+++|+.+.. .....++...+. + -.|.......+....+.. .|++++-..- .+.-|..+++.+. .
T Consensus 4 ~~~ILivdd~~----~~~~~l~~~L~~-~--~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~ 75 (151)
T 3kcn_A 4 NERILLVDDDY----SLLNTLKRNLSF-D--FEVTTCESGPEALACIKKSDPFSVIMVDMRM-PGMEGTEVIQKARLISP 75 (151)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHTT-T--SEEEEESSHHHHHHHHHHSCCCSEEEEESCC-SSSCHHHHHHHHHHHCS
T ss_pred CCeEEEEeCCH----HHHHHHHHHhcc-C--ceEEEeCCHHHHHHHHHcCCCCCEEEEeCCC-CCCcHHHHHHHHHhcCC
Confidence 35778887752 345555655543 3 245544444455555543 3888865431 3445666666544 4
Q ss_pred CCCEEec-CCCC---cceeeecC-ceeeeecCCCCChHHHHHHHHHHHhCHH
Q 012132 382 QLPVLGT-AAGG---TTEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATHVE 428 (470)
Q Consensus 382 G~PvI~s-~~~g---~~e~v~~~-~~G~l~~~~d~~~~~la~~i~~ll~~~~ 428 (470)
.+|+|.. .... ..+.+..| ..+++..|-+ .++|.++|..++....
T Consensus 76 ~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~--~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 76 NSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQ--MSDIKAAINAGIKQYD 125 (151)
T ss_dssp SCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCC--HHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCC--HHHHHHHHHHHHHHHH
Confidence 6777653 3222 23444456 6789999988 9999999999987544
No 118
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=74.67 E-value=12 Score=34.18 Aligned_cols=80 Identities=13% Similarity=0.101 Sum_probs=45.2
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCCh-----hhHH
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-----ETIN 146 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 146 (470)
|.+|+||++. |....-..+++.|.+.||+|.+++.......... .....+...++.++..... ....
T Consensus 8 M~~~~IlVtG------atG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~--~~~~~l~~~~v~~~~~Dl~d~~~l~~~~ 79 (346)
T 3i6i_A 8 SPKGRVLIAG------ATGFIGQFVATASLDAHRPTYILARPGPRSPSKA--KIFKALEDKGAIIVYGLINEQEAMEKIL 79 (346)
T ss_dssp ---CCEEEEC------TTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHH--HHHHHHHHTTCEEEECCTTCHHHHHHHH
T ss_pred CCCCeEEEEC------CCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHH--HHHHHHHhCCcEEEEeecCCHHHHHHHH
Confidence 5567888765 2235667788889999999999986542221111 1112233456666654332 2333
Q ss_pred hhcCCcEEEEccc
Q 012132 147 TALKADLIVLNTA 159 (470)
Q Consensus 147 ~~~~~DiV~~~~~ 159 (470)
...++|+|+....
T Consensus 80 ~~~~~d~Vi~~a~ 92 (346)
T 3i6i_A 80 KEHEIDIVVSTVG 92 (346)
T ss_dssp HHTTCCEEEECCC
T ss_pred hhCCCCEEEECCc
Confidence 4448999876553
No 119
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=74.61 E-value=17 Score=26.90 Aligned_cols=110 Identities=13% Similarity=0.187 Sum_probs=66.6
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHh---cC
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---FQ 382 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma---~G 382 (470)
+.+++|+.+.. .....++...+..|. .+.......+....+.. .|++++-..- .+.-|..+++.+. ..
T Consensus 3 ~~~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~ 75 (126)
T 1dbw_A 3 DYTVHIVDDEE----PVRKSLAFMLTMNGF--AVKMHQSAEAFLAFAPDVRNGVLVTDLRM-PDMSGVELLRNLGDLKIN 75 (126)
T ss_dssp CCEEEEEESSH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHHGGGCCSEEEEEECCS-TTSCHHHHHHHHHHTTCC
T ss_pred CCEEEEEcCCH----HHHHHHHHHHHhCCc--EEEEeCCHHHHHHHHhcCCCCEEEEECCC-CCCCHHHHHHHHHhcCCC
Confidence 35677887752 356677777776654 34443333444444433 4777754331 2334566666553 46
Q ss_pred CCEEec-CCCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 383 LPVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 383 ~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
+|+|.. .... ..+....|..|++..|-+ .++|.++|..++..
T Consensus 76 ~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 76 IPSIVITGHGDVPMAVEAMKAGAVDFIEKPFE--DTVIIEAIERASEH 121 (126)
T ss_dssp CCEEEEECTTCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCHHHHHHHHHhCHHHheeCCCC--HHHHHHHHHHHHHh
Confidence 787754 3222 233445677899999988 99999999887753
No 120
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=74.39 E-value=24 Score=26.12 Aligned_cols=110 Identities=13% Similarity=0.150 Sum_probs=67.4
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhc----
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF---- 381 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~---- 381 (470)
..+++|+.+.. .....++...++.|.. .|.......+....+. ..|++++-..- .+.-|..+++.+..
T Consensus 4 ~~~ilivdd~~----~~~~~l~~~l~~~~~~-~v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~l~~~l~~~~~~ 77 (128)
T 1jbe_A 4 ELKFLVVDDFS----TMRRIVRNLLKELGFN-NVEEAEDGVDALNKLQAGGYGFVISDWNM-PNMDGLELLKTIRAXXAM 77 (128)
T ss_dssp TCCEEEECSCH----HHHHHHHHHHHHTTCC-CEEEESSHHHHHHHHTTCCCCEEEEESCC-SSSCHHHHHHHHHC--CC
T ss_pred ccEEEEECCCH----HHHHHHHHHHHHcCCc-EEEeeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhhccc
Confidence 45677877652 3566777777776642 3444443334444443 35887764431 33456777777754
Q ss_pred -CCCEEec-CCCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 382 -QLPVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 382 -G~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
.+|+|.. .... ..+.+..|..+++..|-+ .+++.++|.+++.
T Consensus 78 ~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~--~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 78 SALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT--AATLEEKLNKIFE 124 (128)
T ss_dssp TTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred CCCcEEEEecCccHHHHHHHHHhCcCceeecCCC--HHHHHHHHHHHHH
Confidence 5677654 3222 233445677899999988 9999999987753
No 121
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=74.38 E-value=21 Score=27.66 Aligned_cols=110 Identities=11% Similarity=0.125 Sum_probs=65.5
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHh---cC
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---FQ 382 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma---~G 382 (470)
..+++|+.+.. .....++...++.|. .|.......+....+.. .|++++-..- .+.-|+.+++.+. ..
T Consensus 14 ~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~ 86 (153)
T 3hv2_A 14 RPEILLVDSQE----VILQRLQQLLSPLPY--TLHFARDATQALQLLASREVDLVISAAHL-PQMDGPTLLARIHQQYPS 86 (153)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHTTSSC--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHHHCTT
T ss_pred CceEEEECCCH----HHHHHHHHHhcccCc--EEEEECCHHHHHHHHHcCCCCEEEEeCCC-CcCcHHHHHHHHHhHCCC
Confidence 35677776652 345566666665553 34444433444444433 4777765441 3444666666554 46
Q ss_pred CCEEecCCCC----cceeeecC-ceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 383 LPVLGTAAGG----TTEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 383 ~PvI~s~~~g----~~e~v~~~-~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
+|+|...... ..+.+..| ..+++..|-+ .++|..+|..++..
T Consensus 87 ~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~--~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 87 TTRILLTGDPDLKLIAKAINEGEIYRYLSKPWD--DQELLLALRQALEH 133 (153)
T ss_dssp SEEEEECCCCCHHHHHHHHHTTCCSEEECSSCC--HHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCHHHHHHHHhCCCcceEEeCCCC--HHHHHHHHHHHHHH
Confidence 7777543222 22334456 6789999988 99999999998864
No 122
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=74.29 E-value=24 Score=26.20 Aligned_cols=109 Identities=13% Similarity=0.103 Sum_probs=65.1
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH---hcCEEEEccCCccc-ccchHHHHHHh--
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---AIDVLVQNSQAWGE-CFGRITIEAMA-- 380 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~---~aDv~v~pS~~~~E-~~g~~~lEAma-- 380 (470)
...+++|+.+.. .....++...+..|. .|.......+....+. ..|++++-..- .+ .-|..+++.+.
T Consensus 4 ~~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l-~~~~~g~~~~~~l~~~ 76 (132)
T 2rdm_A 4 EAVTILLADDEA----ILLLDFESTLTDAGF--LVTAVSSGAKAIEMLKSGAAIDGVVTDIRF-CQPPDGWQVARVAREI 76 (132)
T ss_dssp SSCEEEEECSSH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHTTCCCCEEEEESCC-SSSSCHHHHHHHHHHH
T ss_pred CCceEEEEcCcH----HHHHHHHHHHHHcCC--EEEEECCHHHHHHHHHcCCCCCEEEEeeeC-CCCCCHHHHHHHHHhc
Confidence 346778887752 356677777776664 3544443344445544 35888765431 32 34566666554
Q ss_pred -cCCCEEecC-CCCc---ceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 381 -FQLPVLGTA-AGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 381 -~G~PvI~s~-~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
..+|+|... .... .+.+.. .|++..|-+ .++|..+|.+++..
T Consensus 77 ~~~~~ii~~s~~~~~~~~~~~~~~--~~~l~kP~~--~~~l~~~i~~~~~~ 123 (132)
T 2rdm_A 77 DPNMPIVYISGHAALEWASNGVPD--SIILEKPFT--SAQLITAVSQLLNA 123 (132)
T ss_dssp CTTCCEEEEESSCCTTHHHHSCTT--CEEEESSCC--HHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCccHHHHHhhcCC--cceEeCCCC--HHHHHHHHHHHHhc
Confidence 367877542 2221 222222 268888888 99999999988764
No 123
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=74.23 E-value=23 Score=26.62 Aligned_cols=112 Identities=12% Similarity=0.105 Sum_probs=70.0
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh---cCEEEEccCCcccccchHHHHHHhc--
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA---IDVLVQNSQAWGECFGRITIEAMAF-- 381 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~---aDv~v~pS~~~~E~~g~~~lEAma~-- 381 (470)
...+++|+.+.. .....+++..++.|. .|.......+....+.. .|++++-..- .+.-|+.+++.+..
T Consensus 6 ~~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~ 78 (136)
T 3hdv_A 6 ARPLVLVVDDNA----VNREALILYLKSRGI--DAVGADGAEEARLYLHYQKRIGLMITDLRM-QPESGLDLIRTIRASE 78 (136)
T ss_dssp -CCEEEEECSCH----HHHHHHHHHHHHTTC--CEEEESSHHHHHHHHHHCTTEEEEEECSCC-SSSCHHHHHHHHHTST
T ss_pred CCCeEEEECCCH----HHHHHHHHHHHHcCc--eEEEeCCHHHHHHHHHhCCCCcEEEEeccC-CCCCHHHHHHHHHhcC
Confidence 346788888752 466778888887765 35444433344444432 5777765431 44456777777653
Q ss_pred --CCCEEecCC-CC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhCH
Q 012132 382 --QLPVLGTAA-GG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 427 (470)
Q Consensus 382 --G~PvI~s~~-~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 427 (470)
.+|+|.... .. ..+.+..|..+++..|-+ .++|.++|.++....
T Consensus 79 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 79 RAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVD--LGKLLELVNKELKIG 128 (136)
T ss_dssp TTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHC--
T ss_pred CCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCC--HHHHHHHHHHHhcCc
Confidence 467775432 22 233445678899999988 999999999988753
No 124
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=74.15 E-value=2.8 Score=40.79 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=30.4
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
|.+++|+++. ++..|.-.-+..|++.|.++||+|++++.
T Consensus 6 ~~~~~vl~~p--~p~~GHi~P~l~La~~L~~rG~~VT~v~t 44 (482)
T 2pq6_A 6 NRKPHVVMIP--YPVQGHINPLFKLAKLLHLRGFHITFVNT 44 (482)
T ss_dssp --CCEEEEEC--CSSHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEec--CccchhHHHHHHHHHHHHhCCCeEEEEeC
Confidence 3456888887 44455568899999999999999999984
No 125
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=73.67 E-value=5.4 Score=30.92 Aligned_cols=43 Identities=7% Similarity=-0.023 Sum_probs=31.7
Q ss_pred cccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecCCC
Q 012132 73 KSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQKP 115 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (470)
+++|++|+....+.+.. ......++....+.||+|.|+....+
T Consensus 14 ~~~kl~ii~~sgP~~~~~~~~al~lA~~A~a~g~eV~vFf~~dG 57 (134)
T 3mc3_A 14 QXXXILIVVTHGPEDLDRTYAPLFMASISASMEYETSVFFMIXG 57 (134)
T ss_dssp CCCEEEEEECCCGGGTHHHHHHHHHHHHHHHTTCEEEEEECTTG
T ss_pred ccceEEEEEccCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEeCc
Confidence 35788888876543322 46788889988999999999875543
No 126
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=73.63 E-value=5.3 Score=31.07 Aligned_cols=40 Identities=8% Similarity=0.096 Sum_probs=32.2
Q ss_pred cEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecCC
Q 012132 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
+|++|+.+..|.|.. .+...+++.++...|++|.|+-...
T Consensus 6 kk~~ivv~~~P~g~~~~~~al~~a~a~~a~~~~v~Vff~~D 46 (136)
T 2hy5_B 6 KKFMYLNRKAPYGTIYAWEALEVVLIGAAFDQDVCVLFLDD 46 (136)
T ss_dssp CEEEEEECSCTTTSSHHHHHHHHHHHHGGGCCEEEEEECGG
T ss_pred hEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCCEEEEEEhH
Confidence 469999987776554 5778999999999999999987543
No 127
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=73.48 E-value=5.2 Score=35.48 Aligned_cols=40 Identities=15% Similarity=-0.016 Sum_probs=30.6
Q ss_pred ccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|||||+|..+...+|. ...+..+++.|.+.|++|.++-..
T Consensus 2 MmkiLiI~gSpr~~s~t~~la~~~~~~l~~~g~eV~~~dL~ 42 (273)
T 1d4a_A 2 GRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLY 42 (273)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred CCEEEEEEeCCCCccHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 4699999976655554 466777788888899999998854
No 128
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=73.25 E-value=4.9 Score=30.15 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=25.0
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
|.+++||++.... .....+...|.+.|++|..+.
T Consensus 1 M~~~~ilivdd~~------~~~~~l~~~L~~~g~~v~~~~ 34 (127)
T 3i42_A 1 MSLQQALIVEDYQ------AAAETFKELLEMLGFQADYVM 34 (127)
T ss_dssp -CCEEEEEECSCH------HHHHHHHHHHHHTTEEEEEES
T ss_pred CCcceEEEEcCCH------HHHHHHHHHHHHcCCCEEEEC
Confidence 5568999998643 566777888888999877653
No 129
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=73.12 E-value=4.4 Score=38.90 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=28.1
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
.||++|||++. +|+ ....+++++++.|++|.++...
T Consensus 3 ~m~~~kiLI~g------~g~-~a~~i~~aa~~~G~~~v~v~~~ 38 (446)
T 3ouz_A 3 AMEIKSILIAN------RGE-IALRALRTIKEMGKKAICVYSE 38 (446)
T ss_dssp TTCCCEEEECC------CHH-HHHHHHHHHHHTTCEEEEEEEG
T ss_pred ccccceEEEEC------CCH-HHHHHHHHHHHcCCEEEEEEcC
Confidence 46778898864 333 6779999999999999988743
No 130
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=72.59 E-value=6.8 Score=34.01 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=31.4
Q ss_pred ccccEEEEEeeccC--------CCch-hHHHHHHHHHHHhCCceEEEEecCCC
Q 012132 72 MKSKLVLLVSHELS--------LSGG-PLLLMELAFLLRGVGTKVNWITIQKP 115 (470)
Q Consensus 72 ~~~~kIl~v~~~~~--------~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (470)
|.|+|||++.+... +.|- +.=+..-...|++.|++|++++..+.
T Consensus 1 m~m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~g~ 53 (244)
T 3kkl_A 1 MTPKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGG 53 (244)
T ss_dssp --CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESSSC
T ss_pred CCCCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 44679999988631 2455 35566778889999999999996644
No 131
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=72.59 E-value=30 Score=26.54 Aligned_cols=111 Identities=16% Similarity=0.198 Sum_probs=70.7
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHh----
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---- 380 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---- 380 (470)
.+.+++|+=+.. ..+..++...++.|.. .|.....-.+..+.++ ..|++++=-. -.+--|+.+++.+-
T Consensus 11 k~~rILiVDD~~----~~r~~l~~~L~~~G~~-~v~~a~~g~~al~~~~~~~~DlillD~~-MP~mdG~el~~~ir~~~~ 84 (134)
T 3to5_A 11 KNMKILIVDDFS----TMRRIVKNLLRDLGFN-NTQEADDGLTALPMLKKGDFDFVVTDWN-MPGMQGIDLLKNIRADEE 84 (134)
T ss_dssp TTCCEEEECSCH----HHHHHHHHHHHHTTCC-CEEEESSHHHHHHHHHHHCCSEEEEESC-CSSSCHHHHHHHHHHSTT
T ss_pred CCCEEEEEeCCH----HHHHHHHHHHHHcCCc-EEEEECCHHHHHHHHHhCCCCEEEEcCC-CCCCCHHHHHHHHHhCCC
Confidence 467888886652 4677788888888764 3433332223333333 3588775333 13345777887774
Q ss_pred -cCCCEEecC-CCCc---ceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 381 -FQLPVLGTA-AGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 381 -~G~PvI~s~-~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
..+|||.-. .+.. .+...-|.++++..|-+ +++|.++|.++++
T Consensus 85 ~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~--~~~L~~~i~~~l~ 132 (134)
T 3to5_A 85 LKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFT--AATLKEKLDKIFE 132 (134)
T ss_dssp TTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHCC
T ss_pred CCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHh
Confidence 468888543 3322 23344688899999998 9999999988864
No 132
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=72.10 E-value=29 Score=26.12 Aligned_cols=111 Identities=12% Similarity=0.002 Sum_probs=66.0
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH---hcCEEEEccCCcccccchHHHHHHhc--
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---AIDVLVQNSQAWGECFGRITIEAMAF-- 381 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~---~aDv~v~pS~~~~E~~g~~~lEAma~-- 381 (470)
+..+++|+.+.. .....++...+..|. .|.......+....+. ..|++++-..- .+.-|..+++.+..
T Consensus 14 ~~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~~dlvilD~~l-~~~~g~~~~~~l~~~~ 86 (138)
T 2b4a_A 14 QPFRVTLVEDEP----SHATLIQYHLNQLGA--EVTVHPSGSAFFQHRSQLSTCDLLIVSDQL-VDLSIFSLLDIVKEQT 86 (138)
T ss_dssp CCCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHTGGGGGSCSEEEEETTC-TTSCHHHHHHHHTTSS
T ss_pred CCCeEEEECCCH----HHHHHHHHHHHHcCC--EEEEeCCHHHHHHHHHhCCCCCEEEEeCCC-CCCCHHHHHHHHHhhC
Confidence 567888887752 356677777777664 4544443334444443 36888765441 33346777777754
Q ss_pred -CCCEEec--CCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCH
Q 012132 382 -QLPVLGT--AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 427 (470)
Q Consensus 382 -G~PvI~s--~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 427 (470)
.+|+|.. ....... ..--..+++..|-+ .++|..+|..++...
T Consensus 87 ~~~~ii~ls~~~~~~~~-~~~~~~~~l~KP~~--~~~L~~~i~~~~~~~ 132 (138)
T 2b4a_A 87 KQPSVLILTTGRHELIE-SSEHNLSYLQKPFA--ISELRAAIDYHKPSM 132 (138)
T ss_dssp SCCEEEEEESCC--CCC-CSSSCEEEEESSCC--HHHHHHHHHHTCCC-
T ss_pred CCCCEEEEECCCCCHHH-HHHHHHheeeCCCC--HHHHHHHHHHHHHhc
Confidence 5676643 3222111 11015788988888 999999998887653
No 133
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=71.90 E-value=28 Score=32.01 Aligned_cols=72 Identities=13% Similarity=0.068 Sum_probs=48.4
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhcCCC
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (470)
+++.++.+-+. ..+..++++++++++..+... .++.++++ ..|+++..+. .....-.+.+|+..|++
T Consensus 29 ~~~~lv~v~d~------~~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGk~ 97 (362)
T 1ydw_A 29 PNATISGVASR------SLEKAKAFATANNYPESTKIH---GSYESLLEDPEIDALYVPLP--TSLHVEWAIKAAEKGKH 97 (362)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHHTTCCTTCEEE---SSHHHHHHCTTCCEEEECCC--GGGHHHHHHHHHTTTCE
T ss_pred CCcEEEEEEcC------CHHHHHHHHHHhCCCCCCeee---CCHHHHhcCCCCCEEEEcCC--hHHHHHHHHHHHHCCCe
Confidence 67888766554 245566777887753222221 56777886 4899998876 44445567789999999
Q ss_pred EEecC
Q 012132 385 VLGTA 389 (470)
Q Consensus 385 vI~s~ 389 (470)
|++-.
T Consensus 98 V~~EK 102 (362)
T 1ydw_A 98 ILLEK 102 (362)
T ss_dssp EEECS
T ss_pred EEEec
Confidence 99853
No 134
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=71.67 E-value=13 Score=32.87 Aligned_cols=43 Identities=21% Similarity=0.128 Sum_probs=33.6
Q ss_pred ccccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecCC
Q 012132 72 MKSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
+++|||++|..+...+|. ...+..+++.+.+.|++|.++-...
T Consensus 56 ~~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~d 99 (279)
T 2fzv_A 56 APPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSD 99 (279)
T ss_dssp CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTT
T ss_pred CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhc
Confidence 457899999987766665 5667778888888899999987443
No 135
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=71.66 E-value=18 Score=27.96 Aligned_cols=111 Identities=10% Similarity=0.078 Sum_probs=67.0
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhc-CCCCcEEEecccCCHHHHHHh---cCEEEEccCCcccccchHHHHHHh---
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLAA---IDVLVQNSQAWGECFGRITIEAMA--- 380 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~-~l~~~V~~~g~~~~~~~~~~~---aDv~v~pS~~~~E~~g~~~lEAma--- 380 (470)
..+++|+.+.. .....++...++. |. ..|.......+....+.. .|++++-..- .+.-|+.+++.+.
T Consensus 3 ~~~iLivdd~~----~~~~~l~~~L~~~~g~-~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~ 76 (154)
T 2qsj_A 3 LTVVLIVDDHH----LIRAGAKNLLEGAFSG-MRVEGAETVSDALAFLEADNTVDLILLDVNL-PDAEAIDGLVRLKRFD 76 (154)
T ss_dssp CEEEEEECSCH----HHHHHHHHHHHHHCTT-EEEEEESSHHHHHHHHHTTCCCSEEEECC-------CHHHHHHHHHHC
T ss_pred ccEEEEEcCCH----HHHHHHHHHHHhCCCc-eEEEEecCHHHHHHHHhccCCCCEEEEeCCC-CCCchHHHHHHHHHhC
Confidence 46778887752 4567777777766 43 134444444555555554 6888765431 2334566666554
Q ss_pred cCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 381 FQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 381 ~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
.++|+|...... ..+.+..|..+++..|-+ .++|.++|..++..
T Consensus 77 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 77 PSNAVALISGETDHELIRAALEAGADGFIPKSAD--PQVLIHAVSLILEG 124 (154)
T ss_dssp TTSEEEEC-----CHHHHHHHHTTCCBBCCTTSC--HHHHHHHHHHHHTT
T ss_pred CCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCC--HHHHHHHHHHHHcC
Confidence 367887643222 233445677889999888 99999999998873
No 136
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=71.35 E-value=10 Score=35.02 Aligned_cols=39 Identities=21% Similarity=0.139 Sum_probs=26.8
Q ss_pred ccccccEEEEEeeccCCCchhHHHHHHHHHHHhC-CceEEEEecCC
Q 012132 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQK 114 (470)
Q Consensus 70 ~~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~-G~~V~v~~~~~ 114 (470)
..|++|+||++. |....-..+++.|.++ ||+|.++....
T Consensus 20 ~~m~~~~vlVtG------atG~iG~~l~~~L~~~~g~~V~~~~r~~ 59 (372)
T 3slg_A 20 GSMKAKKVLILG------VNGFIGHHLSKRILETTDWEVFGMDMQT 59 (372)
T ss_dssp ---CCCEEEEES------CSSHHHHHHHHHHHHHSSCEEEEEESCC
T ss_pred cccCCCEEEEEC------CCChHHHHHHHHHHhCCCCEEEEEeCCh
Confidence 446678888764 3345667788888887 99999998544
No 137
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=71.18 E-value=4.9 Score=35.92 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=26.5
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
||||+.. |....-..|++.|.++||+|++++...
T Consensus 1 MkILVTG------atGfIG~~L~~~L~~~G~~V~~l~R~~ 34 (298)
T 4b4o_A 1 MRVLVGG------GTGFIGTALTQLLNARGHEVTLVSRKP 34 (298)
T ss_dssp CEEEEET------TTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CEEEEEC------CCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 6887653 435677889999999999999998543
No 138
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=71.13 E-value=24 Score=26.54 Aligned_cols=111 Identities=12% Similarity=0.041 Sum_probs=69.9
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhc---
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF--- 381 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~--- 381 (470)
...+++|+.+.. .....+++..++.+. .|.......+....+. ..|++++-..- .+.-|..+++.+..
T Consensus 6 ~~~~ilivdd~~----~~~~~l~~~L~~~~~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~ 78 (137)
T 3hdg_A 6 VALKILIVEDDT----DAREWLSTIISNHFP--EVWSAGDGEEGERLFGLHAPDVIITDIRM-PKLGGLEMLDRIKAGGA 78 (137)
T ss_dssp -CCCEEEECSCH----HHHHHHHHHHHTTCS--CEEEESSHHHHHHHHHHHCCSEEEECSSC-SSSCHHHHHHHHHHTTC
T ss_pred cccEEEEEeCCH----HHHHHHHHHHHhcCc--EEEEECCHHHHHHHHhccCCCEEEEeCCC-CCCCHHHHHHHHHhcCC
Confidence 346788888752 356667777776432 4555554444444443 36888875441 34456666665543
Q ss_pred CCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 382 QLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 382 G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
.+|+|...... ..+.+..|..+++..|-+ .++|.++|.++++.
T Consensus 79 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 79 KPYVIVISAFSEMKYFIKAIELGVHLFLPKPIE--PGRLMETLEDFRHI 125 (137)
T ss_dssp CCEEEECCCCCCHHHHHHHHHHCCSEECCSSCC--HHHHHHHHHHHHHH
T ss_pred CCcEEEEecCcChHHHHHHHhCCcceeEcCCCC--HHHHHHHHHHHHHH
Confidence 57777653222 233455678899999988 99999999998764
No 139
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=70.94 E-value=15 Score=26.59 Aligned_cols=107 Identities=8% Similarity=0.065 Sum_probs=64.3
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHh-----cC
Q 012132 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA-----FQ 382 (470)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma-----~G 382 (470)
+++|+.+.. .....+.+..+..|. +|.......+....+. ..|++++-... .+.-|..+++.+. ..
T Consensus 3 ~iliv~~~~----~~~~~l~~~l~~~g~--~v~~~~~~~~~~~~l~~~~~dlii~d~~~-~~~~~~~~~~~l~~~~~~~~ 75 (119)
T 2j48_A 3 HILLLEEED----EAATVVCEMLTAAGF--KVIWLVDGSTALDQLDLLQPIVILMAWPP-PDQSCLLLLQHLREHQADPH 75 (119)
T ss_dssp EEEEECCCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHHHHHHCCSEEEEECST-TCCTHHHHHHHHHHTCCCSS
T ss_pred EEEEEeCCH----HHHHHHHHHHHhCCc--EEEEecCHHHHHHHHHhcCCCEEEEecCC-CCCCHHHHHHHHHhccccCC
Confidence 566776652 356677777777664 4554444344444443 35887765431 3344666777765 46
Q ss_pred CCEEec-CCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 383 LPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 383 ~PvI~s-~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
+|+|.. +.....+....|..+++..|-+ .+++.+.+..++.
T Consensus 76 ~~ii~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~l~~~~~ 117 (119)
T 2j48_A 76 PPLVLFLGEPPVDPLLTAQASAILSKPLD--PQLLLTTLQGLCP 117 (119)
T ss_dssp CCCEEEESSCCSSHHHHHHCSEECSSCST--THHHHHHHHTTCC
T ss_pred CCEEEEeCCCCchhhhhcCHHHhccCCCC--HHHHHHHHHHHhc
Confidence 777753 2222224445566788888877 8999998877653
No 140
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=70.83 E-value=29 Score=25.55 Aligned_cols=107 Identities=10% Similarity=0.119 Sum_probs=64.2
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHh-----cC
Q 012132 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA-----FQ 382 (470)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma-----~G 382 (470)
+++|+.+.. .....++...++.|. .|.......+..+.+.. .|++++-.. -.+.-|..+++.+. ..
T Consensus 4 ~ILivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~al~~l~~~~~dlvllD~~-~p~~~g~~~~~~l~~~~~~~~ 76 (122)
T 3gl9_A 4 KVLLVDDSA----VLRKIVSFNLKKEGY--EVIEAENGQIALEKLSEFTPDLIVLXIM-MPVMDGFTVLKKLQEKEEWKR 76 (122)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHTTBCCSEEEECSC-CSSSCHHHHHHHHHTSTTTTT
T ss_pred eEEEEeCCH----HHHHHHHHHHHHCCc--EEEEeCCHHHHHHHHHhcCCCEEEEecc-CCCCcHHHHHHHHHhcccccC
Confidence 456666542 355666666666654 34433333333344432 577776433 13445677777774 35
Q ss_pred CCEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 383 LPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 383 ~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
+|+|... .+. ..+....|..+++..|-+ .++|.+++.++++
T Consensus 77 ~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~--~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 77 IPVIVLTAKGGEEDESLALSLGARKVMRKPFS--PSQFIEEVKHLLN 121 (122)
T ss_dssp SCEEEEESCCSHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHC
T ss_pred CCEEEEecCCchHHHHHHHhcChhhhccCCCC--HHHHHHHHHHHhc
Confidence 7877543 222 223345578899999988 9999999988764
No 141
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=70.83 E-value=6.2 Score=30.94 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=28.9
Q ss_pred ccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
||||+++..+ ..|. +..+..+++.|.+.|++|.++...
T Consensus 1 M~ki~I~y~S--~tGnT~~~A~~ia~~l~~~g~~v~~~~~~ 39 (148)
T 3f6r_A 1 MSKVLIVFGS--STGNTESIAQKLEELIAAGGHEVTLLNAA 39 (148)
T ss_dssp -CEEEEEEEC--SSSHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred CCeEEEEEEC--CCchHHHHHHHHHHHHHhCCCeEEEEehh
Confidence 3678777644 3444 789999999999999999998643
No 142
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}
Probab=70.78 E-value=26 Score=32.76 Aligned_cols=84 Identities=12% Similarity=0.021 Sum_probs=51.9
Q ss_pred cccEEEEEeeccCC-CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCC
Q 012132 73 KSKLVLLVSHELSL-SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (470)
Q Consensus 73 ~~~kIl~v~~~~~~-~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (470)
+.+||+++...... |-+.+++..++.++...|.+|+++++..-.................|..+......... ....
T Consensus 190 ~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i~~~~d~~ea--v~~a 267 (399)
T 3q98_A 190 KGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFRQVTSMEEA--FKDA 267 (399)
T ss_dssp TTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHH--HTTC
T ss_pred CCCEEEEEEecccccCcchHHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEEcCHHHH--hCCC
Confidence 45689998654332 33458899999999999999999997644333333322233333455554333333322 2478
Q ss_pred cEEEEcc
Q 012132 152 DLIVLNT 158 (470)
Q Consensus 152 DiV~~~~ 158 (470)
|+|+.-.
T Consensus 268 DvVytd~ 274 (399)
T 3q98_A 268 DIVYPKS 274 (399)
T ss_dssp SEEEECC
T ss_pred CEEEecC
Confidence 9999864
No 143
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=70.71 E-value=26 Score=29.50 Aligned_cols=73 Identities=11% Similarity=0.012 Sum_probs=44.8
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhC--CceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC-----------
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG----------- 141 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 141 (470)
|||+++.+ |....+..+..++.+. +++|..+....+... ........|++++....
T Consensus 1 ~ri~vl~S-----g~gsnl~ali~~~~~~~~~~~i~~Vis~~~~~~------~~~~A~~~gIp~~~~~~~~~~~r~~~~~ 69 (212)
T 1jkx_A 1 MNIVVLIS-----GNGSNLQAIIDACKTNKIKGTVRAVFSNKADAF------GLERARQAGIATHTLIASAFDSREAYDR 69 (212)
T ss_dssp CEEEEEES-----SCCHHHHHHHHHHHTTSSSSEEEEEEESCTTCH------HHHHHHHTTCEEEECCGGGCSSHHHHHH
T ss_pred CEEEEEEE-----CCcHHHHHHHHHHHcCCCCceEEEEEeCCCchH------HHHHHHHcCCcEEEeCcccccchhhccH
Confidence 47777774 3234677788887765 578765554433221 23445677888875331
Q ss_pred -hhhHHhhcCCcEEEEcc
Q 012132 142 -QETINTALKADLIVLNT 158 (470)
Q Consensus 142 -~~~~~~~~~~DiV~~~~ 158 (470)
.....+..+||+|++-.
T Consensus 70 ~~~~~l~~~~~Dliv~ag 87 (212)
T 1jkx_A 70 ELIHEIDMYAPDVVVLAG 87 (212)
T ss_dssp HHHHHHGGGCCSEEEESS
T ss_pred HHHHHHHhcCCCEEEEeC
Confidence 12334568999999865
No 144
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=70.50 E-value=18 Score=30.90 Aligned_cols=38 Identities=13% Similarity=0.045 Sum_probs=22.0
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|++||+|.... .-.+..+--....+.+.|++|.+++..
T Consensus 1 m~~vL~v~aHP--DDe~l~~ggtia~~~~~G~~v~vv~lT 38 (227)
T 1uan_A 1 MLDLLVVAPHP--DDGELGCGGTLARAKAEGLSTGILDLT 38 (227)
T ss_dssp CEEEEEEESST--THHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CceEEEEEeCC--CcHHHhHHHHHHHHHhCCCcEEEEEEc
Confidence 46888888542 222222222333445789999888843
No 145
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=70.24 E-value=29 Score=25.77 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=66.1
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHhc---
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF--- 381 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~--- 381 (470)
...+++|+.+.. .....+++..++.|. .+.......+....+.. .|++++-..- .+.-|..+++.+..
T Consensus 6 ~~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~ 78 (130)
T 3eod_A 6 VGKQILIVEDEQ----VFRSLLDSWFSSLGA--TTVLAADGVDALELLGGFTPDLMICDIAM-PRMNGLKLLEHIRNRGD 78 (130)
T ss_dssp TTCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHHHTTCCCSEEEECCC------CHHHHHHHHHTTC
T ss_pred CCCeEEEEeCCH----HHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHhcCCCCEEEEecCC-CCCCHHHHHHHHHhcCC
Confidence 456788888752 466777888887764 35443333444444433 5888765431 34456667766543
Q ss_pred CCCEEecC-CCC---cceeeecCceeeeecCC-CCChHHHHHHHHHHHhC
Q 012132 382 QLPVLGTA-AGG---TTEIVVNGTTGLLHPVG-KEGITPLAKNIVKLATH 426 (470)
Q Consensus 382 G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~-d~~~~~la~~i~~ll~~ 426 (470)
.+|+|... ... ..+.+..|..+++..|- + .+.+.+++..++..
T Consensus 79 ~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~--~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 79 QTPVLVISATENMADIAKALRLGVEDVLLKPVKD--LNRLREMVFACLYP 126 (130)
T ss_dssp CCCEEEEECCCCHHHHHHHHHHCCSEEEESCC-----CHHHHHHHHHHC-
T ss_pred CCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCc--HHHHHHHHHHHhch
Confidence 57777543 222 23445567889999987 6 89999999988764
No 146
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=70.11 E-value=17 Score=30.76 Aligned_cols=74 Identities=8% Similarity=0.071 Sum_probs=46.4
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHh-CCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC-----------
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRG-VGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG----------- 141 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~-~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 141 (470)
+|||+++.+ |....+..+..+..+ .+++|..+..+.+.... .+.....|++++....
T Consensus 5 ~~riavl~S-----G~Gsnl~all~~~~~~~~~eI~~Vis~~~~a~~------~~~A~~~gIp~~~~~~~~~~~r~~~d~ 73 (215)
T 3tqr_A 5 PLPIVVLIS-----GNGTNLQAIIGAIQKGLAIEIRAVISNRADAYG------LKRAQQADIPTHIIPHEEFPSRTDFES 73 (215)
T ss_dssp CEEEEEEES-----SCCHHHHHHHHHHHTTCSEEEEEEEESCTTCHH------HHHHHHTTCCEEECCGGGSSSHHHHHH
T ss_pred CcEEEEEEe-----CCcHHHHHHHHHHHcCCCCEEEEEEeCCcchHH------HHHHHHcCCCEEEeCccccCchhHhHH
Confidence 578888774 444667778877765 46788766654433211 2345567888765321
Q ss_pred -hhhHHhhcCCcEEEEcc
Q 012132 142 -QETINTALKADLIVLNT 158 (470)
Q Consensus 142 -~~~~~~~~~~DiV~~~~ 158 (470)
.....+..+||+|++-.
T Consensus 74 ~~~~~l~~~~~Dliv~ag 91 (215)
T 3tqr_A 74 TLQKTIDHYDPKLIVLAG 91 (215)
T ss_dssp HHHHHHHTTCCSEEEESS
T ss_pred HHHHHHHhcCCCEEEEcc
Confidence 12344678999999865
No 147
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=69.74 E-value=21 Score=32.56 Aligned_cols=78 Identities=15% Similarity=0.100 Sum_probs=49.0
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
..+||+++... .+++..++.++...|.+|.++++..-.................|..+......... ....|
T Consensus 178 ~glkva~vGD~------~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~ea--v~~aD 249 (340)
T 4ep1_A 178 KGIKLAYVGDG------NNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELA--VNEAD 249 (340)
T ss_dssp TTCEEEEESCC------CHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHH--HTTCS
T ss_pred CCCEEEEECCC------chhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHH--hCCCC
Confidence 56899999642 47899999999999999999997655444433333333233445444333333222 24678
Q ss_pred EEEEcc
Q 012132 153 LIVLNT 158 (470)
Q Consensus 153 iV~~~~ 158 (470)
+|+.-.
T Consensus 250 Vvyt~~ 255 (340)
T 4ep1_A 250 FIYTDV 255 (340)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 888753
No 148
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=69.62 E-value=20 Score=27.28 Aligned_cols=111 Identities=11% Similarity=0.060 Sum_probs=67.5
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHh---cC
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---FQ 382 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma---~G 382 (470)
..+++|+.+.. .....+++..++.|. .|.......+....+.. .|++++-.. .+.-|..+++.+. ..
T Consensus 4 ~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~--~~~~g~~~~~~l~~~~~~ 75 (142)
T 2qxy_A 4 TPTVMVVDESR----ITFLAVKNALEKDGF--NVIWAKNEQEAFTFLRREKIDLVFVDVF--EGEESLNLIRRIREEFPD 75 (142)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHGGGTC--EEEEESSHHHHHHHHTTSCCSEEEEECT--TTHHHHHHHHHHHHHCTT
T ss_pred CCeEEEEeCCH----HHHHHHHHHHHhCCC--EEEEECCHHHHHHHHhccCCCEEEEeCC--CCCcHHHHHHHHHHHCCC
Confidence 45677777652 456677777776664 35444433444444433 577776443 3444555665553 35
Q ss_pred CCEEec-CCCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhCHH
Q 012132 383 LPVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 428 (470)
Q Consensus 383 ~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~ 428 (470)
+|+|.. .... ..+....|..+++..|-+ .++|.++|..++....
T Consensus 76 ~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 76 TKVAVLSAYVDKDLIINSVKAGAVDYILKPFR--LDYLLERVKKIISSTP 123 (142)
T ss_dssp CEEEEEESCCCHHHHHHHHHHTCSCEEESSCC--HHHHHHHHHHHHHC--
T ss_pred CCEEEEECCCCHHHHHHHHHCCcceeEeCCCC--HHHHHHHHHHHHhhcc
Confidence 777754 2222 233445577889999988 9999999999987543
No 149
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=69.40 E-value=31 Score=26.30 Aligned_cols=111 Identities=15% Similarity=0.112 Sum_probs=65.5
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHh----
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---- 380 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma---- 380 (470)
...+++|+.+.. .....+++..++.|. .+......++..+.+.. .|++++-.. -.+.-|+.+++.+.
T Consensus 13 ~~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvl~D~~-mp~~~g~~~~~~lr~~~~ 85 (143)
T 3m6m_D 13 RSMRMLVADDHE----ANRMVLQRLLEKAGH--KVLCVNGAEQVLDAMAEEDYDAVIVDLH-MPGMNGLDMLKQLRVMQA 85 (143)
T ss_dssp --CEEEEECSSH----HHHHHHHHHHHC--C--EEEEESSHHHHHHHHHHSCCSEEEEESC-CSSSCHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCH----HHHHHHHHHHHHcCC--eEEEeCCHHHHHHHHhcCCCCEEEEeCC-CCCCCHHHHHHHHHhchh
Confidence 356788887752 356667777776653 34443333444444433 588776443 13444667777664
Q ss_pred ---cCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 381 ---FQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 381 ---~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
..+|+|...... ..+....|..+++..|-+ .++|.++|.++...
T Consensus 86 ~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~--~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 86 SGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVV--AAKLLDTLADLAVS 136 (143)
T ss_dssp TTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHC--
T ss_pred ccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCC--HHHHHHHHHHHHHh
Confidence 236777653322 233344577899999988 99999999988653
No 150
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=69.30 E-value=9.4 Score=34.35 Aligned_cols=69 Identities=10% Similarity=-0.026 Sum_probs=48.9
Q ss_pred CCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCE
Q 012132 306 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPV 385 (470)
Q Consensus 306 ~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~Pv 385 (470)
.+++.++-+-+. ..+..++.+++++... .+++.++++..|+++..+. .....-.+.+|+..|++|
T Consensus 29 ~~~~~l~av~d~------~~~~~~~~a~~~~~~~-------~~~~~~ll~~~D~V~i~tp--~~~h~~~~~~al~~gk~v 93 (308)
T 3uuw_A 29 SERFEFVGAFTP------NKVKREKICSDYRIMP-------FDSIESLAKKCDCIFLHSS--TETHYEIIKILLNLGVHV 93 (308)
T ss_dssp CSSSEEEEEECS------CHHHHHHHHHHHTCCB-------CSCHHHHHTTCSEEEECCC--GGGHHHHHHHHHHTTCEE
T ss_pred CCCeEEEEEECC------CHHHHHHHHHHcCCCC-------cCCHHHHHhcCCEEEEeCC--cHhHHHHHHHHHHCCCcE
Confidence 378888855553 3456677777777541 2567777889999998876 444455677899999999
Q ss_pred EecC
Q 012132 386 LGTA 389 (470)
Q Consensus 386 I~s~ 389 (470)
++-.
T Consensus 94 l~EK 97 (308)
T 3uuw_A 94 YVDK 97 (308)
T ss_dssp EECS
T ss_pred EEcC
Confidence 9753
No 151
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=69.17 E-value=34 Score=25.75 Aligned_cols=111 Identities=13% Similarity=0.057 Sum_probs=67.7
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHh-----
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA----- 380 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma----- 380 (470)
..+++|+.+.. .....++...++.|. .|.......+..+.+.. .|++++-..- .+.-|+.+++.+.
T Consensus 4 ~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvl~D~~l-p~~~g~~~~~~lr~~~~~ 76 (136)
T 3t6k_A 4 PHTLLIVDDDD----TVAEMLELVLRGAGY--EVRRAASGEEALQQIYKNLPDALICDVLL-PGIDGYTLCKRVRQHPLT 76 (136)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHHSGGG
T ss_pred CCEEEEEeCCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHcCCCc
Confidence 34677777652 356667777776664 34433333333344432 5887765431 3444667776664
Q ss_pred cCCCEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhCH
Q 012132 381 FQLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 427 (470)
Q Consensus 381 ~G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 427 (470)
..+|+|... .+. ..+.+..|..+++..|-+ .++|..+|.+++...
T Consensus 77 ~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 77 KTLPILMLTAQGDISAKIAGFEAGANDYLAKPFE--PQELVYRVKNILART 125 (136)
T ss_dssp TTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCC--HHHHHHHHHHHHHC-
T ss_pred CCccEEEEecCCCHHHHHHHHhcCcceEEeCCCC--HHHHHHHHHHHHhcc
Confidence 357877543 222 223445678899999988 999999999988653
No 152
>3rof_A Low molecular weight protein-tyrosine-phosphatase; phosphatase, hydrolase; 1.03A {Staphylococcus aureus}
Probab=69.01 E-value=14 Score=29.44 Aligned_cols=84 Identities=10% Similarity=-0.067 Sum_probs=42.5
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHH-hCCc-eEEEEecCCCC-C-chhHHHhhhhhhhhcceeeEe--cCChhh
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLR-GVGT-KVNWITIQKPS-E-EDEVIYSLEHKMWDRGVQVIS--AKGQET 144 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~-~~G~-~V~v~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 144 (470)
+|+|+|||||+..- ..-+..+..+.+.+. +.|. ++.+.+..-.. . ...........+.+.|+.+-. .+....
T Consensus 3 ~~~m~~vLFVC~gN--~cRSpmAE~i~~~~~~~~gl~~~~v~SAGt~~~~~G~~~~~~a~~~l~~~Gid~~~~~ar~l~~ 80 (158)
T 3rof_A 3 FQGMVDVAFVCLGN--ICRSPMAEAIMRQRLKDRNIHDIKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELFEA 80 (158)
T ss_dssp CCSCEEEEEEESSS--SSHHHHHHHHHHHHHHHTTCCSEEEEEEETTCCSTTCCCCHHHHHHHHHTTCCCTTCCCCBCCT
T ss_pred CCCCCEEEEEeCCc--hhHHHHHHHHHHHHHHHcCCCCeEEEecccCCcccCCCCCHHHHHHHHHcCCCcCCCcceECCh
Confidence 45678999999632 122345555555554 3443 26666522111 0 111112234455667776632 222222
Q ss_pred HHhhcCCcEEEEccc
Q 012132 145 INTALKADLIVLNTA 159 (470)
Q Consensus 145 ~~~~~~~DiV~~~~~ 159 (470)
. . .+|+|++-+.
T Consensus 81 ~--~-~~DlIi~Md~ 92 (158)
T 3rof_A 81 T--D-DFDYIVAMDQ 92 (158)
T ss_dssp T--C-CCSEEEESSH
T ss_pred h--h-cCCEEEEcCH
Confidence 1 2 8999999864
No 153
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=68.86 E-value=31 Score=25.38 Aligned_cols=110 Identities=8% Similarity=0.042 Sum_probs=67.4
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHh-----
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA----- 380 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma----- 380 (470)
..+++|+.+.. .....+++..++.|. .|.......+....+.. .|++++-..- .+.-|..+++.+.
T Consensus 3 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlii~D~~l-~~~~g~~~~~~l~~~~~~ 75 (127)
T 3i42_A 3 LQQALIVEDYQ----AAAETFKELLEMLGF--QADYVMSGTDALHAMSTRGYDAVFIDLNL-PDTSGLALVKQLRALPME 75 (127)
T ss_dssp CEEEEEECSCH----HHHHHHHHHHHHTTE--EEEEESSHHHHHHHHHHSCCSEEEEESBC-SSSBHHHHHHHHHHSCCS
T ss_pred cceEEEEcCCH----HHHHHHHHHHHHcCC--CEEEECCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhhhcc
Confidence 35677877752 466777888887764 45444443444444433 5777765431 4445667776664
Q ss_pred cCCCEEecC-CCC--cceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 381 FQLPVLGTA-AGG--TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 381 ~G~PvI~s~-~~g--~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
..+|+|... ... ..+....|..+++..|-+ .++|.+++......
T Consensus 76 ~~~~ii~~s~~~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 76 KTSKFVAVSGFAKNDLGKEACELFDFYLEKPID--IASLEPILQSIEGH 122 (127)
T ss_dssp SCCEEEEEECC-CTTCCHHHHHHCSEEEESSCC--HHHHHHHHHHHC--
T ss_pred CCCCEEEEECCcchhHHHHHHHhhHHheeCCCC--HHHHHHHHHHhhcc
Confidence 347777542 221 133344567789999988 99999999887654
No 154
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=68.78 E-value=19 Score=30.50 Aligned_cols=75 Identities=16% Similarity=0.092 Sum_probs=46.9
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhC--CceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC-------hh
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG-------QE 143 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 143 (470)
.++||+++.+ |....+..+..++.+. +++|..+....+.... .+.....|++++.... ..
T Consensus 7 ~~~ri~vl~S-----G~gsnl~all~~~~~~~~~~~I~~Vis~~~~a~~------l~~A~~~gIp~~~~~~~~~~~~~~~ 75 (215)
T 3kcq_A 7 KELRVGVLIS-----GRGSNLEALAKAFSTEESSVVISCVISNNAEARG------LLIAQSYGIPTFVVKRKPLDIEHIS 75 (215)
T ss_dssp CCEEEEEEES-----SCCHHHHHHHHHTCCC-CSEEEEEEEESCTTCTH------HHHHHHTTCCEEECCBTTBCHHHHH
T ss_pred CCCEEEEEEE-----CCcHHHHHHHHHHHcCCCCcEEEEEEeCCcchHH------HHHHHHcCCCEEEeCcccCChHHHH
Confidence 3568888774 4446788888888664 3677666554332211 2345567888775321 23
Q ss_pred hHHhhcCCcEEEEcc
Q 012132 144 TINTALKADLIVLNT 158 (470)
Q Consensus 144 ~~~~~~~~DiV~~~~ 158 (470)
...+..+||+|++-.
T Consensus 76 ~~L~~~~~Dlivlag 90 (215)
T 3kcq_A 76 TVLREHDVDLVCLAG 90 (215)
T ss_dssp HHHHHTTCSEEEESS
T ss_pred HHHHHhCCCEEEEeC
Confidence 445678999999865
No 155
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=68.73 E-value=13 Score=28.58 Aligned_cols=111 Identities=15% Similarity=0.123 Sum_probs=66.1
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcC-CCCcEEEeccc-CCHHHHH---HhcCEEEEccCCcccccchHHHHHHhc
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKK-IQDRVHFVNKT-LTVAPYL---AAIDVLVQNSQAWGECFGRITIEAMAF 381 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~-l~~~V~~~g~~-~~~~~~~---~~aDv~v~pS~~~~E~~g~~~lEAma~ 381 (470)
+..+++|+.+.. .....++...++.| . .|...... +.+..+. ...|++++-..- .+.-|+.+++.+..
T Consensus 19 ~~~~ilivdd~~----~~~~~l~~~L~~~g~~--~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~ 91 (146)
T 4dad_A 19 GMINILVASEDA----SRLAHLARLVGDAGRY--RVTRTVGRAAQIVQRTDGLDAFDILMIDGAA-LDTAELAAIEKLSR 91 (146)
T ss_dssp GGCEEEEECSCH----HHHHHHHHHHHHHCSC--EEEEECCCHHHHTTCHHHHTTCSEEEEECTT-CCHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCH----HHHHHHHHHHhhCCCe--EEEEeCCHHHHHHHHHhcCCCCCEEEEeCCC-CCccHHHHHHHHHH
Confidence 456777777652 35666777777665 3 23332222 2232332 346888875431 33345666655543
Q ss_pred ---CCCEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 382 ---QLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 382 ---G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
.+|||... ... ..+.+..|..+++..|-+ .++|..+|..++..
T Consensus 92 ~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 92 LHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLE--PRALDDALKRAAAQ 141 (146)
T ss_dssp HCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCC--HHHHHHHHHHHHHT
T ss_pred hCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCC--HHHHHHHHHHHHhh
Confidence 67777543 222 233455677899999988 99999999988763
No 156
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=68.60 E-value=22 Score=32.15 Aligned_cols=78 Identities=13% Similarity=0.022 Sum_probs=49.0
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
..+||+++... .+++..++.++...|.+|.++++..-.................|..+......... ....|
T Consensus 156 ~glkva~vGD~------~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~ea--v~~aD 227 (323)
T 3gd5_A 156 AGLKLAYVGDG------NNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEA--ARGAH 227 (323)
T ss_dssp TTCEEEEESCC------CHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHH--HTTCS
T ss_pred CCCEEEEECCC------CcHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHH--hcCCC
Confidence 56899998753 58999999999999999999997655444433332232223345444333333222 24678
Q ss_pred EEEEcc
Q 012132 153 LIVLNT 158 (470)
Q Consensus 153 iV~~~~ 158 (470)
+|+.-.
T Consensus 228 vvyt~~ 233 (323)
T 3gd5_A 228 ILYTDV 233 (323)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 888763
No 157
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=68.38 E-value=25 Score=26.51 Aligned_cols=111 Identities=10% Similarity=0.117 Sum_probs=68.2
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcc-----cccchHHHHHHh
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWG-----ECFGRITIEAMA 380 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~-----E~~g~~~lEAma 380 (470)
..+++|+.+.. .....+++..++.|. .|.......+....+.. .|++++-... . +.-|..+++.+.
T Consensus 3 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~~-~~~~~~~~~g~~~~~~l~ 75 (140)
T 2qr3_A 3 LGTIIIVDDNK----GVLTAVQLLLKNHFS--KVITLSSPVSLSTVLREENPEVVLLDMNF-TSGINNGNEGLFWLHEIK 75 (140)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHTTTSS--EEEEECCHHHHHHHHHHSCEEEEEEETTT-TC-----CCHHHHHHHHH
T ss_pred CceEEEEeCCH----HHHHHHHHHHHhCCc--EEEEeCCHHHHHHHHHcCCCCEEEEeCCc-CCCCCCCccHHHHHHHHH
Confidence 35677777652 356667777776654 45544444455555544 4777764431 2 334556665553
Q ss_pred ---cCCCEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhCH
Q 012132 381 ---FQLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 427 (470)
Q Consensus 381 ---~G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 427 (470)
..+|+|... ... ..+.+..|..+++..|-+ .++|.++|..++...
T Consensus 76 ~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 76 RQYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWD--NQKLLETLLNAASQA 127 (140)
T ss_dssp HHCTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCC--HHHHHHHHHHHHTCC
T ss_pred hhCcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCC--HHHHHHHHHHHHHhc
Confidence 467877543 222 233445577899999988 999999999988753
No 158
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=68.06 E-value=7.4 Score=28.70 Aligned_cols=66 Identities=11% Similarity=0.064 Sum_probs=42.8
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHh
Q 012132 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA 380 (470)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma 380 (470)
-++++|.|.... -.-+.+++.+++.|++-.|.-.+ ..++......+|+++.... -.+-..-++..+
T Consensus 6 Ill~Cg~G~sTS-~l~~k~~~~~~~~gi~~~i~a~~-~~~~~~~~~~~Dvil~~pq---v~~~~~~~~~~~ 71 (106)
T 1e2b_A 6 IYLFSSAGMSTS-LLVSKMRAQAEKYEVPVIIEAFP-ETLAGEKGQNADVVLLGPQ---IAYMLPEIQRLL 71 (106)
T ss_dssp EEEECSSSTTTH-HHHHHHHHHHHHSCCSEEEEEEC-SSSTTHHHHHCSEEEECTT---SGGGHHHHHHHS
T ss_pred EEEECCCchhHH-HHHHHHHHHHHHCCCCeEEEEec-HHHHHhhccCCCEEEEccc---hhhhHHHHHHHh
Confidence 356677775433 35678899999999864333333 3677778899999997765 233444455544
No 159
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=67.82 E-value=19 Score=30.43 Aligned_cols=75 Identities=16% Similarity=0.156 Sum_probs=45.6
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHh-CCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC---------
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRG-VGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--------- 141 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~-~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 141 (470)
.++|||+++.+ |....+..+..++.+ .+++|..+..+++. ...+.....|++++....
T Consensus 10 ~~~~ri~vl~S-----G~gsnl~all~~~~~~~~~eI~~Vis~~~a-------~~~~~A~~~gIp~~~~~~~~~~~r~~~ 77 (215)
T 3da8_A 10 SAPARLVVLAS-----GTGSLLRSLLDAAVGDYPARVVAVGVDREC-------RAAEIAAEASVPVFTVRLADHPSRDAW 77 (215)
T ss_dssp CSSEEEEEEES-----SCCHHHHHHHHHSSTTCSEEEEEEEESSCC-------HHHHHHHHTTCCEEECCGGGSSSHHHH
T ss_pred CCCcEEEEEEe-----CChHHHHHHHHHHhccCCCeEEEEEeCCch-------HHHHHHHHcCCCEEEeCcccccchhhh
Confidence 34678988875 334567777777644 34677666554431 123445567888766532
Q ss_pred ---hhhHHhhcCCcEEEEcc
Q 012132 142 ---QETINTALKADLIVLNT 158 (470)
Q Consensus 142 ---~~~~~~~~~~DiV~~~~ 158 (470)
.....+..+||+|++-.
T Consensus 78 d~~~~~~l~~~~~Dlivlag 97 (215)
T 3da8_A 78 DVAITAATAAHEPDLVVSAG 97 (215)
T ss_dssp HHHHHHHHHTTCCSEEEEEE
T ss_pred hHHHHHHHHhhCCCEEEEcC
Confidence 12344668999998854
No 160
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=67.81 E-value=11 Score=32.74 Aligned_cols=37 Identities=16% Similarity=0.017 Sum_probs=27.3
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
.+|++++..-..|| --.-.|+.|.++|++|+|+....
T Consensus 59 ~~v~VlcG~GNNGG---DGlv~AR~L~~~G~~V~v~~~~~ 95 (246)
T 1jzt_A 59 KHVFVIAGPGNNGG---DGLVCARHLKLFGYNPVVFYPKR 95 (246)
T ss_dssp CEEEEEECSSHHHH---HHHHHHHHHHHTTCCEEEECCCC
T ss_pred CeEEEEECCCCCHH---HHHHHHHHHHHCCCeEEEEEcCC
Confidence 48998886544444 33567899999999999987543
No 161
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=67.78 E-value=6.9 Score=32.43 Aligned_cols=39 Identities=15% Similarity=0.060 Sum_probs=30.5
Q ss_pred ccEEEEEeeccCCCch-hHHHHHHHHHHHh-CCceEEEEecCC
Q 012132 74 SKLVLLVSHELSLSGG-PLLLMELAFLLRG-VGTKVNWITIQK 114 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~-~G~~V~v~~~~~ 114 (470)
||||+++..+ +.|. ...+..+++.+.+ .|++|.++....
T Consensus 1 Mmkilii~~S--~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~ 41 (198)
T 3b6i_A 1 MAKVLVLYYS--MYGHIETMARAVAEGASKVDGAEVVVKRVPE 41 (198)
T ss_dssp -CEEEEEECC--SSSHHHHHHHHHHHHHHTSTTCEEEEEECCC
T ss_pred CCeEEEEEeC--CCcHHHHHHHHHHHHHhhcCCCEEEEEEccc
Confidence 3689998865 4554 7888899999998 899999987543
No 162
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=67.59 E-value=32 Score=25.92 Aligned_cols=107 Identities=9% Similarity=0.205 Sum_probs=62.5
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHh---cCCC
Q 012132 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQLP 384 (470)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G~P 384 (470)
+++|+.+.. .....++...+..|. .|.......+....+. ..|++++-..- .+.-|..+++.+. ..+|
T Consensus 6 ~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvllD~~l-~~~~g~~l~~~l~~~~~~~~ 78 (137)
T 3cfy_A 6 RVLLVEDST----SLAILYKQYVKDEPY--DIFHVETGRDAIQFIERSKPQLIILDLKL-PDMSGEDVLDWINQNDIPTS 78 (137)
T ss_dssp EEEEECSCT----THHHHHHHHTTTSSS--EEEEESSHHHHHHHHHHHCCSEEEECSBC-SSSBHHHHHHHHHHTTCCCE
T ss_pred eEEEEeCCH----HHHHHHHHHHHhcCc--eEEEeCCHHHHHHHHHhcCCCEEEEecCC-CCCCHHHHHHHHHhcCCCCC
Confidence 567777653 355666666655443 3443333334334433 35888764431 2334566666554 4567
Q ss_pred EEec-CCCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 385 VLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 385 vI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
+|.. .... ..+.+..|..+++..|-+ .++|...|..++.
T Consensus 79 ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 79 VIIATAHGSVDLAVNLIQKGAEDFLEKPIN--ADRLKTSVALHLK 121 (137)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred EEEEEecCcHHHHHHHHHCCccEEEeCCCC--HHHHHHHHHHHHH
Confidence 6654 3222 233345577899999988 9999999988764
No 163
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=67.55 E-value=32 Score=25.28 Aligned_cols=74 Identities=14% Similarity=0.292 Sum_probs=46.2
Q ss_pred EEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHh--cCCCEEec
Q 012132 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA--FQLPVLGT 388 (470)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma--~G~PvI~s 388 (470)
++++|.|.... =..+.+++.+++.|++-.|.-.+ ..++...+..+|+++.+.. ... -..-++..+ .++||+.-
T Consensus 8 lvvC~~G~~TS-ll~~kl~~~~~~~gi~~~i~~~~-~~~~~~~~~~~D~Ii~t~~--l~~-~~~~~~~~~~~~~~pv~~I 82 (109)
T 2l2q_A 8 LLVCGAGMSTS-MLVQRIEKYAKSKNINATIEAIA-ETRLSEVVDRFDVVLLAPQ--SRF-NKKRLEEITKPKGIPIEII 82 (109)
T ss_dssp EEESSSSCSSC-HHHHHHHHHHHHHTCSEEEEEEC-STTHHHHTTTCSEEEECSC--CSS-HHHHHHHHHHHHTCCEEEC
T ss_pred EEECCChHhHH-HHHHHHHHHHHHCCCCeEEEEec-HHHHHhhcCCCCEEEECCc--cHH-HHHHHHHHhcccCCCEEEE
Confidence 44555665444 46778999999988853443333 3577777889999887665 221 133334333 58998765
Q ss_pred C
Q 012132 389 A 389 (470)
Q Consensus 389 ~ 389 (470)
+
T Consensus 83 ~ 83 (109)
T 2l2q_A 83 N 83 (109)
T ss_dssp C
T ss_pred C
Confidence 4
No 164
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=67.11 E-value=12 Score=34.52 Aligned_cols=78 Identities=10% Similarity=-0.035 Sum_probs=44.6
Q ss_pred ccccccEEEEEeeccCCCchhHHHH-HHHHHHHhC-CceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHh
Q 012132 70 SFMKSKLVLLVSHELSLSGGPLLLM-ELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINT 147 (470)
Q Consensus 70 ~~~~~~kIl~v~~~~~~~G~~~~~~-~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (470)
..|+++||++|.. | .... .++..|.+. |++|..++..... .........|+..+ .....+..
T Consensus 23 ~~m~~~rigiIG~-----G--~~g~~~~~~~l~~~~~~~l~av~d~~~~-------~~~~~a~~~g~~~~--~~~~~ll~ 86 (350)
T 3rc1_A 23 ANANPIRVGVIGC-----A--DIAWRRALPALEAEPLTEVTAIASRRWD-------RAKRFTERFGGEPV--EGYPALLE 86 (350)
T ss_dssp ---CCEEEEEESC-----C--HHHHHTHHHHHHHCTTEEEEEEEESSHH-------HHHHHHHHHCSEEE--ESHHHHHT
T ss_pred CCCCceEEEEEcC-----c--HHHHHHHHHHHHhCCCeEEEEEEcCCHH-------HHHHHHHHcCCCCc--CCHHHHhc
Confidence 3467789999974 2 1222 456666665 7887766533211 11222233456554 45566666
Q ss_pred hcCCcEEEEcccchhh
Q 012132 148 ALKADLIVLNTAVAGK 163 (470)
Q Consensus 148 ~~~~DiV~~~~~~~~~ 163 (470)
..++|+|++.++....
T Consensus 87 ~~~~D~V~i~tp~~~h 102 (350)
T 3rc1_A 87 RDDVDAVYVPLPAVLH 102 (350)
T ss_dssp CTTCSEEEECCCGGGH
T ss_pred CCCCCEEEECCCcHHH
Confidence 6789999998876544
No 165
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=66.94 E-value=37 Score=25.38 Aligned_cols=109 Identities=11% Similarity=0.205 Sum_probs=65.1
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh-------cCEEEEccCCcccccchHHHHHHh-
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA-------IDVLVQNSQAWGECFGRITIEAMA- 380 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~-------aDv~v~pS~~~~E~~g~~~lEAma- 380 (470)
.+++|+.+.. .....++...+..|.. .|.......+..+.+.. .|++++=-. -.+.-|+.+++.+.
T Consensus 3 ~~ILivdD~~----~~~~~l~~~L~~~g~~-~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~-mp~~~G~~~~~~lr~ 76 (133)
T 2r25_B 3 VKILVVEDNH----VNQEVIKRMLNLEGIE-NIELACDGQEAFDKVKELTSKGENYNMIFMDVQ-MPKVDGLLSTKMIRR 76 (133)
T ss_dssp SCEEEECSCH----HHHHHHHHHHHHTTCC-CEEEESSHHHHHHHHHHHHHHTCCCSEEEECSC-CSSSCHHHHHHHHHH
T ss_pred ceEEEEcCCH----HHHHHHHHHHHHcCCc-eEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCC-CCCCChHHHHHHHHh
Confidence 3566776652 3566677777765542 34444433334444432 588886433 12334666676664
Q ss_pred ---cCCCEEec-CCCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 381 ---FQLPVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 381 ---~G~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
...|||.. ..+. ..+....|..|++..|-+ .++|.++|.+++.
T Consensus 77 ~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~l~~~~~ 126 (133)
T 2r25_B 77 DLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIK--RPKLKTILTEFCA 126 (133)
T ss_dssp HSCCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHCT
T ss_pred hcCCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHH
Confidence 24677743 3332 233445577899999988 9999999988865
No 166
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=66.86 E-value=32 Score=31.68 Aligned_cols=92 Identities=13% Similarity=0.076 Sum_probs=59.3
Q ss_pred CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCC
Q 012132 270 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLT 349 (470)
Q Consensus 270 ~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~ 349 (470)
++.++.+|- ..-+...++.++. . ++++++-+-+. ..+..++.+++++... ...+
T Consensus 26 ~irvgiiG~--G~~~~~~~~~~~~---~---------~~~~lvav~d~------~~~~a~~~a~~~~~~~------~~~~ 79 (361)
T 3u3x_A 26 ELRFAAVGL--NHNHIYGQVNCLL---R---------AGARLAGFHEK------DDALAAEFSAVYADAR------RIAT 79 (361)
T ss_dssp CCEEEEECC--CSTTHHHHHHHHH---H---------TTCEEEEEECS------CHHHHHHHHHHSSSCC------EESC
T ss_pred CcEEEEECc--CHHHHHHHHHHhh---c---------CCcEEEEEEcC------CHHHHHHHHHHcCCCc------ccCC
Confidence 466777873 1223334444443 1 78888877664 3456677777775321 1267
Q ss_pred HHHHHHh--cCEEEEccCCcccccchHHHHHHhcCCCEEecC
Q 012132 350 VAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389 (470)
Q Consensus 350 ~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~ 389 (470)
+.++++. .|+++..+- ...-.-.+.+|+..|++|++=.
T Consensus 80 ~~~ll~~~~vD~V~I~tp--~~~H~~~~~~al~aGkhVl~EK 119 (361)
T 3u3x_A 80 AEEILEDENIGLIVSAAV--SSERAELAIRAMQHGKDVLVDK 119 (361)
T ss_dssp HHHHHTCTTCCEEEECCC--HHHHHHHHHHHHHTTCEEEEES
T ss_pred HHHHhcCCCCCEEEEeCC--hHHHHHHHHHHHHCCCeEEEeC
Confidence 7888875 799888776 4444456779999999999753
No 167
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=66.82 E-value=35 Score=24.92 Aligned_cols=107 Identities=12% Similarity=0.124 Sum_probs=62.8
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHh-----cC
Q 012132 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA-----FQ 382 (470)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma-----~G 382 (470)
+++|+.+.. .....++...+..|. .+.......+....+. ..|++++-..- .+.-|..+++.+. ..
T Consensus 3 ~ilivdd~~----~~~~~l~~~L~~~~~--~v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~~ 75 (124)
T 1mb3_A 3 KVLIVEDNE----LNMKLFHDLLEAQGY--ETLQTREGLSALSIARENKPDLILMDIQL-PEISGLEVTKWLKEDDDLAH 75 (124)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHHHHHHCCSEEEEESBC-SSSBHHHHHHHHHHSTTTTT
T ss_pred EEEEEcCCH----HHHHHHHHHHHHcCc--EEEEeCCHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHcCccccC
Confidence 456666642 356667777776654 3433332233333332 35887764431 3334666777665 25
Q ss_pred CCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 383 LPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 383 ~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
+|+|...... ..+....|..+++..|-+ .+++.+++..++.
T Consensus 76 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 76 IPVVAVTAFAMKGDEERIREGGCEAYISKPIS--VVHFLETIKRLLE 120 (124)
T ss_dssp SCEEEEC------CHHHHHHHTCSEEECSSCC--HHHHHHHHHHHHS
T ss_pred CcEEEEECCCCHHHHHHHHhCCCCEEEeCCCC--HHHHHHHHHHHHh
Confidence 7887543222 233344577899999988 9999999988765
No 168
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=66.66 E-value=7.2 Score=33.46 Aligned_cols=40 Identities=20% Similarity=-0.019 Sum_probs=31.9
Q ss_pred cEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecCC
Q 012132 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
||||+|..+...++- ...+..+++.|.+.|++|.++-...
T Consensus 2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~ 42 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYA 42 (228)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTT
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhh
Confidence 799999977666654 5777888888988899999998543
No 169
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=66.54 E-value=7.9 Score=32.52 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=31.5
Q ss_pred cccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecCC
Q 012132 73 KSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
.+|||+++..+. .|. ...+..+++.+.+.|++|.++....
T Consensus 5 ~mmkilii~~S~--~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 45 (211)
T 1ydg_A 5 APVKLAIVFYSS--TGTGYAMAQEAAEAGRAAGAEVRLLKVRE 45 (211)
T ss_dssp CCCEEEEEECCS--SSHHHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CCCeEEEEEECC--CChHHHHHHHHHHHHhcCCCEEEEEeccc
Confidence 357999998544 554 7888899999999999999987543
No 170
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=66.37 E-value=37 Score=25.13 Aligned_cols=110 Identities=13% Similarity=0.145 Sum_probs=67.8
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhc----
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF---- 381 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~---- 381 (470)
..+++|+.+.. .....+++..++.|. .|.......+....+. ..|++++-..- .+.-|..+++.+..
T Consensus 6 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~~ 78 (132)
T 3lte_A 6 SKRILVVDDDQ----AMAAAIERVLKRDHW--QVEIAHNGFDAGIKLSTFEPAIMTLDLSM-PKLDGLDVIRSLRQNKVA 78 (132)
T ss_dssp -CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHTCCSEEEEESCB-TTBCHHHHHHHHHTTTCS
T ss_pred CccEEEEECCH----HHHHHHHHHHHHCCc--EEEEeCCHHHHHHHHHhcCCCEEEEecCC-CCCCHHHHHHHHHhcCcc
Confidence 45778887652 456677777777654 4544444344444443 35777765441 44456777877753
Q ss_pred -CCCEEecCCCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 382 -QLPVLGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 382 -G~PvI~s~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
..|+|.+.... ..+.+..|..+++..|-+ .++|.++|.+....
T Consensus 79 ~~~~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 79 NQPKILVVSGLDKAKLQQAVTEGADDYLEKPFD--NDALLDRIHDLVNE 125 (132)
T ss_dssp SCCEEEEECCSCSHHHHHHHHHTCCEEECSSCC--HHHHHHHHHHHHC-
T ss_pred CCCeEEEEeCCChHHHHHHHHhChHHHhhCCCC--HHHHHHHHHHHcCC
Confidence 34455443222 233455678899999988 99999999988764
No 171
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=66.32 E-value=7.5 Score=34.61 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=29.4
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
|.|+||+.|++.-.-.|-...+.+|+..|+++|+.|.++-.+.
T Consensus 1 M~M~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 1 MAETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp ---CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 3456777666433223336889999999999999999887554
No 172
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=65.87 E-value=34 Score=30.71 Aligned_cols=79 Identities=15% Similarity=0.094 Sum_probs=49.5
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
+..||+++... ..+++..++.++...|.+|.++++..-.+...............|..+.......... ...|
T Consensus 147 ~gl~va~vGD~-----~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav--~~aD 219 (307)
T 2i6u_A 147 RGLRLSYFGDG-----ANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAA--AGAD 219 (307)
T ss_dssp TTCEEEEESCT-----TSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHH--TTCS
T ss_pred CCeEEEEECCC-----CcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHh--cCCC
Confidence 45789998762 1489999999999999999999976554443333222323334454443333333222 4688
Q ss_pred EEEEcc
Q 012132 153 LIVLNT 158 (470)
Q Consensus 153 iV~~~~ 158 (470)
+|+...
T Consensus 220 vvy~~~ 225 (307)
T 2i6u_A 220 VLVTDT 225 (307)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 888853
No 173
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=65.77 E-value=14 Score=28.89 Aligned_cols=39 Identities=15% Similarity=-0.008 Sum_probs=27.5
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
.||+|++...-.+----..+..++..|.++||+|+|...
T Consensus 6 ~m~~LilLGCPE~Pvq~p~~lYl~~~Lk~~G~~v~VA~n 44 (157)
T 1kjn_A 6 TGKALMVLGCPESPVQIPLAIYTSHKLKKKGFRVTVTAN 44 (157)
T ss_dssp CCEEEEECCCSCSTTHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred ceeeeEEecCCCCcchhhHHHHHHHHHHhcCCeeEEecC
Confidence 478888875432211124677889999999999999874
No 174
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=65.74 E-value=29 Score=31.64 Aligned_cols=76 Identities=12% Similarity=0.122 Sum_probs=47.7
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCC
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (470)
...+||+++... .+++..++.++...|.+|.++++..-.................|..+....... -....
T Consensus 173 l~glkva~vGD~------~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~---av~~a 243 (339)
T 4a8t_A 173 LEDCKVVFVGDA------TQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS---SVEGA 243 (339)
T ss_dssp GGGCEEEEESSC------CHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG---GGTTC
T ss_pred CCCCEEEEECCC------chhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh---HHcCC
Confidence 346799988753 589999999999999999999976554443333322333334454433222222 12467
Q ss_pred cEEEE
Q 012132 152 DLIVL 156 (470)
Q Consensus 152 DiV~~ 156 (470)
|+|+.
T Consensus 244 Dvvyt 248 (339)
T 4a8t_A 244 DFLYT 248 (339)
T ss_dssp SEEEE
T ss_pred CEEEe
Confidence 88886
No 175
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=65.69 E-value=20 Score=27.05 Aligned_cols=111 Identities=9% Similarity=0.075 Sum_probs=65.2
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH-hcCEEEEccCCcccccchHHHHHHh--c--
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA-AIDVLVQNSQAWGECFGRITIEAMA--F-- 381 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~-~aDv~v~pS~~~~E~~g~~~lEAma--~-- 381 (470)
...+++|+.+.. .....++...+..|. .|.......+....+. ..|++++-..- .+.-|..+++.+. .
T Consensus 6 ~~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~dlvllD~~l-p~~~g~~~~~~l~~~~~~ 78 (136)
T 1dcf_A 6 TGLKVLVMDENG----VSRMVTKGLLVHLGC--EVTTVSSNEECLRVVSHEHKVVFMDVCM-PGVENYQIALRIHEKFTK 78 (136)
T ss_dssp TTCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHCCTTCSEEEEECCS-STTTTTHHHHHHHHHHC-
T ss_pred CCCeEEEEeCCH----HHHHHHHHHHHHcCC--eEEEeCCHHHHHHHHhccCCEEEEeCCC-CCCcHHHHHHHHHHhhhh
Confidence 356788887752 356667777776654 3443333233333332 23887764331 2334566666664 1
Q ss_pred ---CCC-EE-ecCCCCc---ceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 382 ---QLP-VL-GTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 382 ---G~P-vI-~s~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
..| +| .|..... .+....|..+++..|-+ .++|.+++.+++..
T Consensus 79 ~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 79 QRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVS--LDNIRDVLSDLLEP 129 (136)
T ss_dssp CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHHSC
T ss_pred ccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCC--HHHHHHHHHHHhch
Confidence 344 44 4443332 23344577899999988 99999999888764
No 176
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=65.61 E-value=7.9 Score=32.46 Aligned_cols=40 Identities=10% Similarity=0.054 Sum_probs=30.5
Q ss_pred ccEEEEEeeccCC--Cch-hHHHHHHHHHHHhCC--ceEEEEecC
Q 012132 74 SKLVLLVSHELSL--SGG-PLLLMELAFLLRGVG--TKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~--~G~-~~~~~~l~~~L~~~G--~~V~v~~~~ 113 (470)
|||||+|..+..+ +|. ...+..+++.+.+.| ++|.++-..
T Consensus 1 M~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~ 45 (208)
T 2hpv_A 1 MSKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVY 45 (208)
T ss_dssp -CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETT
T ss_pred CCeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCC
Confidence 3699999977664 454 567778889998887 999998754
No 177
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=65.37 E-value=9.3 Score=33.30 Aligned_cols=40 Identities=18% Similarity=0.041 Sum_probs=29.2
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCC
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (470)
++||||+...+... +.-+..|+++|.+ +|+|.|+++....
T Consensus 10 ~~m~ILlTNDDGi~---apGi~aL~~~l~~-~~~V~VVAP~~~~ 49 (261)
T 3ty2_A 10 PKLRLLLSNDDGVY---AKGLAILAKTLAD-LGEVDVVAPDRNR 49 (261)
T ss_dssp -CCEEEEECSSCTT---CHHHHHHHHHHTT-TSEEEEEEESSCC
T ss_pred CCCeEEEEcCCCCC---CHHHHHHHHHHHh-cCCEEEEecCCCC
Confidence 45899888775322 3568889999988 7899999976543
No 178
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=65.30 E-value=34 Score=25.25 Aligned_cols=110 Identities=10% Similarity=0.091 Sum_probs=66.5
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHhc----
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF---- 381 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~---- 381 (470)
..+++|+.+.. .....++...+..|.. .|.......+....+.. .|++++-..- .+.-|..+++.+..
T Consensus 6 ~~~ilivdd~~----~~~~~l~~~L~~~g~~-~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~ 79 (129)
T 1p6q_A 6 KIKVLIVDDQV----TSRLLLGDALQQLGFK-QITAAGDGEQGMKIMAQNPHHLVISDFNM-PKMDGLGLLQAVRANPAT 79 (129)
T ss_dssp CCCEEEECSSH----HHHHHHHHHHHTTTCS-CEECCSSHHHHHHHHHTSCCSEEEECSSS-CSSCHHHHHHHHTTCTTS
T ss_pred cCeEEEEcCCH----HHHHHHHHHHHHCCCc-EEEecCCHHHHHHHHHcCCCCEEEEeCCC-CCCCHHHHHHHHhcCccc
Confidence 35677777752 3566777777766542 34443333344444433 5887764431 33346677777743
Q ss_pred -CCCEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 382 -QLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 382 -G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
.+|+|... .+. ..+.+..|..+++..|-+ .+++..+|..++.
T Consensus 80 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 80 KKAAFIILTAQGDRALVQKAAALGANNVLAKPFT--IEKMKAAIEAVFG 126 (129)
T ss_dssp TTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSS--HHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCC--HHHHHHHHHHHHH
Confidence 56776543 222 223344577889999988 9999999987764
No 179
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=65.12 E-value=29 Score=31.47 Aligned_cols=79 Identities=11% Similarity=0.048 Sum_probs=49.2
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
+.+||+++.. |..+++..++..+...|.+|+++++..-.+...............|..+.......... ...|
T Consensus 166 ~gl~va~vGD-----~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav--~~aD 238 (325)
T 1vlv_A 166 KGVKVVFMGD-----TRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEAL--AGAD 238 (325)
T ss_dssp TTCEEEEESC-----TTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHH--TTCS
T ss_pred CCcEEEEECC-----CCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHH--ccCC
Confidence 4578999876 12489999999999999999999976544433332222323334554443333333222 4689
Q ss_pred EEEEcc
Q 012132 153 LIVLNT 158 (470)
Q Consensus 153 iV~~~~ 158 (470)
+|+...
T Consensus 239 vvyt~~ 244 (325)
T 1vlv_A 239 VVYTDV 244 (325)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 988853
No 180
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=65.09 E-value=38 Score=31.87 Aligned_cols=84 Identities=14% Similarity=0.008 Sum_probs=51.5
Q ss_pred cccEEEEEeec-cCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCC
Q 012132 73 KSKLVLLVSHE-LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (470)
Q Consensus 73 ~~~kIl~v~~~-~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (470)
+.+||+++... ...|-+.+++..++..+...|.+|+++++..-.................|..+.......... ...
T Consensus 187 ~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~~~d~~eav--~~A 264 (418)
T 2yfk_A 187 KGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTKTNSMAEAF--KDA 264 (418)
T ss_dssp TTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEEESCHHHHH--TTC
T ss_pred CCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCEEEEEcCHHHHh--cCC
Confidence 45789999642 222444689999999999999999999976543233322222233334555443333333322 478
Q ss_pred cEEEEcc
Q 012132 152 DLIVLNT 158 (470)
Q Consensus 152 DiV~~~~ 158 (470)
|+|+.-.
T Consensus 265 DVVytd~ 271 (418)
T 2yfk_A 265 DVVYPKS 271 (418)
T ss_dssp SEEEECC
T ss_pred CEEEEcc
Confidence 9999864
No 181
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=64.99 E-value=33 Score=31.43 Aligned_cols=76 Identities=12% Similarity=0.122 Sum_probs=48.0
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCC
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (470)
...+||+++... .+++..++..+...|.+|+++++..-.................|..+....... -....
T Consensus 151 l~glkva~vGD~------~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~---av~~a 221 (355)
T 4a8p_A 151 LEDCKVVFVGDA------TQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS---SVEGA 221 (355)
T ss_dssp GGGCEEEEESCC------CHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG---GGTTC
T ss_pred CCCCEEEEECCC------chhHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH---HHcCC
Confidence 346799988753 589999999999999999999976554444333333333334454443222222 12467
Q ss_pred cEEEE
Q 012132 152 DLIVL 156 (470)
Q Consensus 152 DiV~~ 156 (470)
|+|+.
T Consensus 222 DVVyt 226 (355)
T 4a8p_A 222 DFLYT 226 (355)
T ss_dssp SEEEE
T ss_pred CEEEe
Confidence 88886
No 182
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=64.98 E-value=8 Score=33.43 Aligned_cols=40 Identities=5% Similarity=0.011 Sum_probs=30.9
Q ss_pred ccEEEEEeeccCCCch-hHHHHHHHHHHHhC-CceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGG-PLLLMELAFLLRGV-GTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~-G~~V~v~~~~ 113 (470)
|||||++..+...+|. ...+..+++.|.+. |++|.++...
T Consensus 1 MmkIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl~ 42 (242)
T 1sqs_A 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPF 42 (242)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECTT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 3699999876555454 67778888999888 9999998744
No 183
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=64.85 E-value=17 Score=32.12 Aligned_cols=60 Identities=12% Similarity=-0.010 Sum_probs=41.3
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceee---ec--CceeeeecCC
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIV---VN--GTTGLLHPVG 409 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v---~~--~~~G~l~~~~ 409 (470)
+++.+++..+|++|--+. .+..--.+..++..|+|+|+...|-..+.. .+ ...+.++.++
T Consensus 65 ~dl~~ll~~~DVVIDfT~--p~a~~~~~~~al~~G~~vVigTTG~s~~~~~~L~~aa~~~~vv~a~N 129 (272)
T 4f3y_A 65 DDIERVCAEADYLIDFTL--PEGTLVHLDAALRHDVKLVIGTTGFSEPQKAQLRAAGEKIALVFSAN 129 (272)
T ss_dssp CCHHHHHHHCSEEEECSC--HHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHTTTSEEEECSC
T ss_pred CCHHHHhcCCCEEEEcCC--HHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhccCCEEEECC
Confidence 678888899999998776 565555566899999999987766433311 11 2356666655
No 184
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=64.60 E-value=6.8 Score=33.04 Aligned_cols=40 Identities=13% Similarity=-0.016 Sum_probs=30.6
Q ss_pred ccEEEEEeeccCC-Cch-hHHHHHHHHHHHhC--CceEEEEecC
Q 012132 74 SKLVLLVSHELSL-SGG-PLLLMELAFLLRGV--GTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~-~G~-~~~~~~l~~~L~~~--G~~V~v~~~~ 113 (470)
|||||+|..+... +|. ...+..+++.+.+. |++|.++-..
T Consensus 1 MmkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~ 44 (212)
T 3r6w_A 1 MSRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVG 44 (212)
T ss_dssp CCCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESS
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 4789999876655 344 56777888888887 9999998754
No 185
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=64.37 E-value=39 Score=30.40 Aligned_cols=78 Identities=18% Similarity=0.103 Sum_probs=49.1
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
+.+||+++... .+++..++.++...|.+|+++++..-.................|..+......... ....|
T Consensus 154 ~gl~va~vGD~------~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~ea--v~~aD 225 (315)
T 1pvv_A 154 KGVKVVYVGDG------NNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKA--VKDAD 225 (315)
T ss_dssp TTCEEEEESCC------CHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHH--TTTCS
T ss_pred CCcEEEEECCC------cchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHH--hCCCC
Confidence 45789998752 58999999999999999999997655444333322232333455444333333222 24688
Q ss_pred EEEEcc
Q 012132 153 LIVLNT 158 (470)
Q Consensus 153 iV~~~~ 158 (470)
+|+...
T Consensus 226 vvy~~~ 231 (315)
T 1pvv_A 226 VIYTDV 231 (315)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 888753
No 186
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=64.16 E-value=9.3 Score=31.17 Aligned_cols=40 Identities=15% Similarity=0.049 Sum_probs=28.1
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCC
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (470)
|+|||++..+.. .+.....++++.|.+.|++|+++.....
T Consensus 4 m~k~IllgvTGs---~aa~k~~~ll~~L~~~g~~V~vv~T~~A 43 (175)
T 3qjg_A 4 MGENVLICLCGS---VNSINISHYIIELKSKFDEVNVIASTNG 43 (175)
T ss_dssp -CCEEEEEECSS---GGGGGHHHHHHHHTTTCSEEEEEECTGG
T ss_pred CCCEEEEEEeCH---HHHHHHHHHHHHHHHCCCEEEEEECcCH
Confidence 346777766421 1235688999999999999999985543
No 187
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=63.83 E-value=43 Score=25.02 Aligned_cols=111 Identities=13% Similarity=0.015 Sum_probs=68.4
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEE-ecccCCHHHHHH--hcCEEEEccCCcc-cccchHHHHHHh--
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHF-VNKTLTVAPYLA--AIDVLVQNSQAWG-ECFGRITIEAMA-- 380 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~-~g~~~~~~~~~~--~aDv~v~pS~~~~-E~~g~~~lEAma-- 380 (470)
...+++|+.+.. .....++...++.|. .+.. .....+....+. ..|++++-... . +.-|..+++.+.
T Consensus 8 ~~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~~a~~~~~~~~~dlii~d~~~-~~~~~g~~~~~~l~~~ 80 (140)
T 3cg0_A 8 DLPGVLIVEDGR----LAAATLRIQLESLGY--DVLGVFDNGEEAVRCAPDLRPDIALVDIML-CGALDGVETAARLAAG 80 (140)
T ss_dssp CCCEEEEECCBH----HHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHCCSEEEEESSC-CSSSCHHHHHHHHHHH
T ss_pred CCceEEEEECCH----HHHHHHHHHHHHCCC--eeEEEECCHHHHHHHHHhCCCCEEEEecCC-CCCCCHHHHHHHHHhC
Confidence 456788887752 456677777777664 3442 333344444443 36888875441 2 234555565544
Q ss_pred cCCCEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 381 FQLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 381 ~G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
..+|+|.-. ... ..+.+..|..+++..|-+ .++|..+|..++..
T Consensus 81 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~~ 128 (140)
T 3cg0_A 81 CNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVA--ADTLHRSIEMAIHK 128 (140)
T ss_dssp SCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCC--HHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCC--HHHHHHHHHHHHhc
Confidence 578887543 222 223445577889999988 99999999888753
No 188
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=63.46 E-value=13 Score=34.58 Aligned_cols=100 Identities=13% Similarity=0.103 Sum_probs=60.6
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccC
Q 012132 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348 (470)
Q Consensus 269 ~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~ 348 (470)
.++.|+.+|-=.-.+ .-+.++..+...+. ..++++++-+-+. ..+..++.+++++.+. + ..
T Consensus 24 kkirvgiIG~G~ig~---~H~~a~~~~~~~~~----~~~~~~lvav~d~------~~~~a~~~a~~~g~~~-~-----y~ 84 (393)
T 4fb5_A 24 KPLGIGLIGTGYMGK---CHALAWNAVKTVFG----DVERPRLVHLAEA------NAGLAEARAGEFGFEK-A-----TA 84 (393)
T ss_dssp CCCEEEEECCSHHHH---HHHHHHTTHHHHHC----SSCCCEEEEEECC--------TTHHHHHHHHTCSE-E-----ES
T ss_pred CCccEEEEcCCHHHH---HHHHHHHhhhhhhc----cCCCcEEEEEECC------CHHHHHHHHHHhCCCe-e-----cC
Confidence 346777776311112 12334433322222 3477888877764 4556677888887641 1 26
Q ss_pred CHHHHHHh--cCEEEEccCCcccccchHHHHHHhcCCCEEecC
Q 012132 349 TVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389 (470)
Q Consensus 349 ~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~ 389 (470)
++.++++. .|+++..+- ...-.-.+++|+..|++|++=.
T Consensus 85 d~~ell~~~~iDaV~IatP--~~~H~~~a~~al~aGkhVl~EK 125 (393)
T 4fb5_A 85 DWRALIADPEVDVVSVTTP--NQFHAEMAIAALEAGKHVWCEK 125 (393)
T ss_dssp CHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCEEEECS
T ss_pred CHHHHhcCCCCcEEEECCC--hHHHHHHHHHHHhcCCeEEEcc
Confidence 77788864 688888776 4444556789999999999753
No 189
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=63.11 E-value=33 Score=30.78 Aligned_cols=77 Identities=8% Similarity=0.007 Sum_probs=47.4
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCcE
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADL 153 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 153 (470)
.+||+++... .+++..++..+...|.+|+++++..-.................|..+......... ....|+
T Consensus 146 gl~va~vGD~------~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~ea--v~~aDv 217 (307)
T 3tpf_A 146 IAKVAFIGDS------NNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEA--LKDKDV 217 (307)
T ss_dssp CCEEEEESCS------SHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHH--HTTCSE
T ss_pred CCEEEEEcCC------CccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHH--hcCCCE
Confidence 6799999861 37899999999999999999997654443332222222222344444333333222 246788
Q ss_pred EEEcc
Q 012132 154 IVLNT 158 (470)
Q Consensus 154 V~~~~ 158 (470)
|+.-.
T Consensus 218 vyt~~ 222 (307)
T 3tpf_A 218 VITDT 222 (307)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 88753
No 190
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=63.01 E-value=18 Score=32.53 Aligned_cols=77 Identities=13% Similarity=0.035 Sum_probs=43.7
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchh-HHHhhhhhhhhcceeeEecCCh-----hhHHhh
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE-VIYSLEHKMWDRGVQVISAKGQ-----ETINTA 148 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 148 (470)
|||+|+.+ ..+.....++|.+.||+|..+..+++..... ..........+.|++++..... ....+.
T Consensus 1 mrivf~gt-------~~fa~~~L~~L~~~~~~i~~Vvt~~d~~~g~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~l~~ 73 (305)
T 2bln_A 1 MKTVVFAY-------HDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQ 73 (305)
T ss_dssp CEEEEEEC-------HHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHHHHHHH
T ss_pred CEEEEEEc-------CHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCcCccHHHHHHHHcCCCEECCCcCCcHHHHHHHHh
Confidence 67888764 2344555666767799987666543322110 0011334455678887654432 244567
Q ss_pred cCCcEEEEcc
Q 012132 149 LKADLIVLNT 158 (470)
Q Consensus 149 ~~~DiV~~~~ 158 (470)
.+||++++-.
T Consensus 74 ~~~Dliv~~~ 83 (305)
T 2bln_A 74 LSPDVIFSFY 83 (305)
T ss_dssp TCCSEEEEES
T ss_pred cCCCEEEEec
Confidence 8999998754
No 191
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=62.98 E-value=13 Score=27.43 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=30.1
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
|.+|||++++...- |.+..+..+-+.+.++|.++.+....-
T Consensus 1 M~mkkIll~Cg~G~--sTS~l~~k~~~~~~~~gi~~~i~a~~~ 41 (106)
T 1e2b_A 1 MEKKHIYLFSSAGM--STSLLVSKMRAQAEKYEVPVIIEAFPE 41 (106)
T ss_dssp CCCEEEEEECSSST--TTHHHHHHHHHHHHHSCCSEEEEEECS
T ss_pred CCCcEEEEECCCch--hHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 45678999996432 224677788899999999988876443
No 192
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=62.92 E-value=44 Score=30.24 Aligned_cols=69 Identities=13% Similarity=0.001 Sum_probs=47.6
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhcCCC
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (470)
+++.++-+-+. ..+..++.+++++.+. ...++.++++ ..|+++..+. .....-.+.+|+..|++
T Consensus 28 ~~~~l~av~d~------~~~~~~~~~~~~~~~~------~~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~~gk~ 93 (330)
T 3e9m_A 28 AQAEVRGIASR------RLENAQKMAKELAIPV------AYGSYEELCKDETIDIIYIPTY--NQGHYSAAKLALSQGKP 93 (330)
T ss_dssp SSEEEEEEBCS------SSHHHHHHHHHTTCCC------CBSSHHHHHHCTTCSEEEECCC--GGGHHHHHHHHHHTTCC
T ss_pred CCcEEEEEEeC------CHHHHHHHHHHcCCCc------eeCCHHHHhcCCCCCEEEEcCC--CHHHHHHHHHHHHCCCe
Confidence 77887755553 2345667777776531 2367888887 7899888776 44444556789999999
Q ss_pred EEecC
Q 012132 385 VLGTA 389 (470)
Q Consensus 385 vI~s~ 389 (470)
|++-.
T Consensus 94 vl~EK 98 (330)
T 3e9m_A 94 VLLEK 98 (330)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 99754
No 193
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=62.85 E-value=44 Score=24.77 Aligned_cols=109 Identities=12% Similarity=0.140 Sum_probs=68.1
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEE-EecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhc---C
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF---Q 382 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~-~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~---G 382 (470)
.+++|+.+.. .....++...++.|. .+. .....++....+. ..|++++-..- .+.-|..+++.+.. .
T Consensus 2 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~~a~~~~~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~~ 74 (134)
T 3f6c_A 2 LNAIIIDDHP----LAIAAIRNLLIKNDI--EILAELTEGGSAVQRVETLKPDIVIIDVDI-PGVNGIQVLETLRKRQYS 74 (134)
T ss_dssp EEEEEECCCH----HHHHHHHHHHHHTTE--EEEEEESSSTTHHHHHHHHCCSEEEEETTC-SSSCHHHHHHHHHHTTCC
T ss_pred eEEEEEcCCH----HHHHHHHHHHhhCCc--EEEEEcCCHHHHHHHHHhcCCCEEEEecCC-CCCChHHHHHHHHhcCCC
Confidence 4677777652 466777888877652 333 3333455555543 36887765441 34456667766543 5
Q ss_pred CCEEec-CCC---CcceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 383 LPVLGT-AAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 383 ~PvI~s-~~~---g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
+|+|.. ... ...+....|..+++..|-+ .++|.++|..+++.
T Consensus 75 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 75 GIIIIVSAKNDHFYGKHCADAGANGFVSKKEG--MNNIIAAIEAAKNG 120 (134)
T ss_dssp SEEEEEECC---CTHHHHHHTTCSEEEEGGGC--THHHHHHHHHHHTT
T ss_pred CeEEEEeCCCChHHHHHHHHhCCCEEEeCCCC--HHHHHHHHHHHHCC
Confidence 666643 222 2334455678899999988 99999999998864
No 194
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=62.60 E-value=16 Score=33.61 Aligned_cols=67 Identities=12% Similarity=0.011 Sum_probs=46.2
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhcCCC
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (470)
+++.++-+-+. ..+..++.++++|++ . ..++.++++ ..|+++..+. ...-.-.+.+|+..|++
T Consensus 51 ~~~~l~av~d~------~~~~~~~~a~~~g~~----~---~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGk~ 115 (350)
T 3rc1_A 51 PLTEVTAIASR------RWDRAKRFTERFGGE----P---VEGYPALLERDDVDAVYVPLP--AVLHAEWIDRALRAGKH 115 (350)
T ss_dssp TTEEEEEEEES------SHHHHHHHHHHHCSE----E---EESHHHHHTCTTCSEEEECCC--GGGHHHHHHHHHHTTCE
T ss_pred CCeEEEEEEcC------CHHHHHHHHHHcCCC----C---cCCHHHHhcCCCCCEEEECCC--cHHHHHHHHHHHHCCCc
Confidence 78888755543 245566777777653 1 157777876 5899998776 44444567789999999
Q ss_pred EEec
Q 012132 385 VLGT 388 (470)
Q Consensus 385 vI~s 388 (470)
|++=
T Consensus 116 Vl~E 119 (350)
T 3rc1_A 116 VLAE 119 (350)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9874
No 195
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=62.53 E-value=70 Score=26.94 Aligned_cols=108 Identities=7% Similarity=0.034 Sum_probs=68.5
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhc--CCC
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF--QLP 384 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~--G~P 384 (470)
.+++|+.+.. .....++...+..|. .|.......+....+. ..|++++-..- .+.-|+.+++.+.. ++|
T Consensus 6 ~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~dlvilD~~l-~~~~g~~~~~~lr~~~~~~ 78 (238)
T 2gwr_A 6 QRILVVDDDA----SLAEMLTIVLRGEGF--DTAVIGDGTQALTAVRELRPDLVLLDLML-PGMNGIDVCRVLRADSGVP 78 (238)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHCCSEEEEESSC-SSSCHHHHHHHHHTTCCCC
T ss_pred CeEEEEeCCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhCCCCc
Confidence 4677777652 356677777776654 3554444455555543 35888765431 33346666766643 688
Q ss_pred EEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 385 VLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 385 vI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
+|.-. ... ..+.+..|..|++..|.+ .++|..+|..++.
T Consensus 79 ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~--~~~L~~~i~~~~~ 121 (238)
T 2gwr_A 79 IVMLTAKTDTVDVVLGLESGADDYIMKPFK--PKELVARVRARLR 121 (238)
T ss_dssp EEEEEETTCCSCHHHHHHTTCCEEEEESCC--HHHHHHHHHHHCC
T ss_pred EEEEeCCCCHHHHHHHHHCCCCEEEeCCCC--HHHHHHHHHHHHh
Confidence 87542 222 233455678899999988 9999999998875
No 196
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=62.50 E-value=6.3 Score=38.21 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=30.3
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhC-CceEEEEecCC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQK 114 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~-G~~V~v~~~~~ 114 (470)
+++|+++. ++..|--.-+..|++.|+++ ||+|++++...
T Consensus 6 ~~~vl~~p--~p~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~ 45 (480)
T 2vch_A 6 TPHVAIIP--SPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGE 45 (480)
T ss_dssp CCEEEEEC--CSCHHHHHHHHHHHHHHHHHHCCEEEEEECCS
T ss_pred CcEEEEec--CcchhHHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 46788876 33345567899999999998 99999998554
No 197
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=62.35 E-value=23 Score=29.27 Aligned_cols=74 Identities=20% Similarity=0.207 Sum_probs=43.5
Q ss_pred ccccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcC
Q 012132 72 MKSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (470)
||++||+++... |. ..-+......|.+.|++|.+++...+... ....|+.+.+............
T Consensus 1 mm~~~v~ill~~----g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v----------~~~~g~~v~~d~~l~~~~~~~~ 66 (197)
T 2rk3_A 1 MASKRALVILAK----GAEEMETVIPVDVMRRAGIKVTVAGLAGKDPV----------QCSRDVVICPDASLEDAKKEGP 66 (197)
T ss_dssp -CCCEEEEEECT----TCCHHHHHHHHHHHHHTTCEEEEEETTCSSCE----------ECTTSCEECCSEEHHHHHTTCC
T ss_pred CCCCEEEEEECC----CCcHHHHHHHHHHHHHCCCEEEEEEcCCCCcc----------ccCCCCEEeCCcCHHHcCCccC
Confidence 456789988753 22 34455667788888999999986543211 1123444443333332212367
Q ss_pred CcEEEEccc
Q 012132 151 ADLIVLNTA 159 (470)
Q Consensus 151 ~DiV~~~~~ 159 (470)
+|+|++-..
T Consensus 67 ~D~livpGG 75 (197)
T 2rk3_A 67 YDVVVLPGG 75 (197)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCC
Confidence 999998764
No 198
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=61.80 E-value=33 Score=28.84 Aligned_cols=73 Identities=14% Similarity=0.113 Sum_probs=43.4
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhC--CceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC-----------
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG----------- 141 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 141 (470)
|||+++.+ |....+..|+..+++. +++|..+..+++.... .......|++++....
T Consensus 1 ~riaVl~S-----G~Gs~L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~------~~~A~~~gIp~~~~~~~~~~~r~~~~~ 69 (209)
T 1meo_A 1 ARVAVLIS-----GTGSNLQALIDSTREPNSSAQIDIVISNKAAVAG------LDKAERAGIPTRVINHKLYKNRVEFDS 69 (209)
T ss_dssp CEEEEEES-----SSCTTHHHHHHHHHSTTCSCEEEEEEESSTTCHH------HHHHHHTTCCEEECCGGGSSSHHHHHH
T ss_pred CeEEEEEE-----CCchHHHHHHHHHhcCCCCcEEEEEEeCCCChHH------HHHHHHcCCCEEEECccccCchhhhhH
Confidence 46777764 3334566677776654 6888766655433221 2345667888763221
Q ss_pred -hhhHHhhcCCcEEEEcc
Q 012132 142 -QETINTALKADLIVLNT 158 (470)
Q Consensus 142 -~~~~~~~~~~DiV~~~~ 158 (470)
.....+..+||+|++-.
T Consensus 70 ~~~~~l~~~~~Dliv~a~ 87 (209)
T 1meo_A 70 AIDLVLEEFSIDIVCLAG 87 (209)
T ss_dssp HHHHHHHHTTCCEEEEES
T ss_pred HHHHHHHhcCCCEEEEcc
Confidence 12334568999998865
No 199
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=61.66 E-value=49 Score=24.90 Aligned_cols=112 Identities=13% Similarity=0.129 Sum_probs=64.9
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhc-CCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHhc--
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF-- 381 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~-~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~-- 381 (470)
...+++|+.+.. .....+....++. +.. .+.......+....+.. .|++++-..- .+.-|..+++.+..
T Consensus 8 ~~~~iLivdd~~----~~~~~l~~~L~~~~~~~-~v~~~~~~~~al~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~ 81 (143)
T 2qv0_A 8 EKMKVIIVEDEF----LAQQELSWLINTHSQME-IVGSFDDGLDVLKFLQHNKVDAIFLDINI-PSLDGVLLAQNISQFA 81 (143)
T ss_dssp --CEEEEECSCH----HHHHHHHHHHHHHSCCE-EEEEESCHHHHHHHHHHCCCSEEEECSSC-SSSCHHHHHHHHTTST
T ss_pred CceEEEEEcCCH----HHHHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhCCCCEEEEecCC-CCCCHHHHHHHHHccC
Confidence 346788887752 3566677777665 321 12222222344444433 5888875441 34456777777754
Q ss_pred -CCCEE-ecCCC-CcceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 382 -QLPVL-GTAAG-GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 382 -G~PvI-~s~~~-g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
..|+| .+... ...+.+..|..+++..|-+ .++|..+|..++..
T Consensus 82 ~~~~ii~~s~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~~ 127 (143)
T 2qv0_A 82 HKPFIVFITAWKEHAVEAFELEAFDYILKPYQ--ESRIINMLQKLTTA 127 (143)
T ss_dssp TCCEEEEEESCCTTHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHhCCcceEEeCCCC--HHHHHHHHHHHHHH
Confidence 34444 33322 2333445677899999988 99999999988753
No 200
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=61.64 E-value=40 Score=29.96 Aligned_cols=85 Identities=8% Similarity=0.051 Sum_probs=55.4
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc-------cCCHHHHHHhcCEEEEccCC-------c-cccc
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-------TLTVAPYLAAIDVLVQNSQA-------W-GECF 371 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~-------~~~~~~~~~~aDv~v~pS~~-------~-~E~~ 371 (470)
++.++.++.........+.+.+++..+++|.. .|..+.- .+++.+.+..||+++++.=+ | .-++
T Consensus 55 ~~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~-~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGnt~~l~~~l~~t~l 133 (291)
T 3en0_A 55 NDAIIGIIPSASREPLLIGERYQTIFSDMGVK-ELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQLRLCGLLADTPL 133 (291)
T ss_dssp GGCEEEEECTTCSSHHHHHHHHHHHHHHHCCS-EEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCHHHHHHHHTTCHH
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCC-eeEEEEecCccccCCHHHHHHHhcCCEEEECCCCHHHHHHHHHhCCH
Confidence 45788888764433334677788888888874 5655532 24567789999999987531 0 1112
Q ss_pred chHHHHHHhcC-CCEEecCCCC
Q 012132 372 GRITIEAMAFQ-LPVLGTAAGG 392 (470)
Q Consensus 372 g~~~lEAma~G-~PvI~s~~~g 392 (470)
--.+-|+...| +|++.+..|.
T Consensus 134 ~~~L~~~~~~G~~~~~GtSAGA 155 (291)
T 3en0_A 134 MDRIRQRVHNGEISLAGTSAGA 155 (291)
T ss_dssp HHHHHHHHHTTSSEEEEETHHH
T ss_pred HHHHHHHHHCCCeEEEEeCHHH
Confidence 23455788899 8998887653
No 201
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=61.59 E-value=5.3 Score=33.26 Aligned_cols=38 Identities=8% Similarity=0.022 Sum_probs=28.6
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
|||||+|......++ ......+++++.+.|++|.++-.
T Consensus 1 MmkiLiI~gsp~~~~-s~l~~~l~~~~~~~g~ev~~~dL 38 (192)
T 3f2v_A 1 MPKTLIILAHPNISQ-STVHKHWSDAVRQHTDRFTVHEL 38 (192)
T ss_dssp -CCEEEEECCTTGGG-CSHHHHHHHHHTTCTTTEEEEEH
T ss_pred CCEEEEEEeCCCccH-HHHHHHHHHHHHhCCCeEEEEEc
Confidence 478999986544332 47788889999999999999873
No 202
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} SCOP: c.44.1.1 PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A
Probab=61.59 E-value=21 Score=28.38 Aligned_cols=86 Identities=14% Similarity=-0.009 Sum_probs=42.4
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHH-hCCc--eEEEEecCCCCC--chhHHHhhhhhhhhcceeeEecCChhhH
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLR-GVGT--KVNWITIQKPSE--EDEVIYSLEHKMWDRGVQVISAKGQETI 145 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~-~~G~--~V~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (470)
.|+++|||||+..-. .-+..+..+.+.+. +.|. ++.+.+..-... ...........+.+.|+.+ ... .+.+
T Consensus 2 ~~~~~~vLFVC~gN~--cRSpmAE~~~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~~~a~~~l~~~Gid~-~~~-ar~l 77 (157)
T 3n8i_A 2 EQATKSVLFVCLGNI--CRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRGQSCMKRHGIPM-SHV-ARQI 77 (157)
T ss_dssp --CCEEEEEEESSSS--SHHHHHHHHHHHHHHHTTCGGGEEEEEEESSSTTTTCCCCHHHHHHHHHTTCCC-CCC-CCBC
T ss_pred CCCCCEEEEECCCch--hHHHHHHHHHHHHHHHcCCCCcEEEEeeecCccccCCCCCHHHHHHHHHcCcCC-CCc-eeEC
Confidence 356789999996321 11344555555554 3453 366665221110 0111112344566778876 322 2221
Q ss_pred --HhhcCCcEEEEcccc
Q 012132 146 --NTALKADLIVLNTAV 160 (470)
Q Consensus 146 --~~~~~~DiV~~~~~~ 160 (470)
.....+|+|++.+..
T Consensus 78 ~~~~~~~~DlIi~M~~~ 94 (157)
T 3n8i_A 78 TKEDFATFDYILCMDES 94 (157)
T ss_dssp CHHHHHHCSEEEESSHH
T ss_pred CHHHcCCCCEEEEeCcH
Confidence 122469999997643
No 203
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=61.53 E-value=12 Score=32.43 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=28.9
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (470)
+||||+...+... +.-+..|+++|.+.| +|.|+++....
T Consensus 1 ~M~ILlTNDDGi~---apGi~aL~~~l~~~g-~V~VVAP~~~~ 39 (251)
T 2phj_A 1 MPTFLLVNDDGYF---SPGINALREALKSLG-RVVVVAPDRNL 39 (251)
T ss_dssp -CEEEEECSSCTT---CHHHHHHHHHHTTTS-EEEEEEESSCC
T ss_pred CCEEEEECCCCCC---CHHHHHHHHHHHhcC-CEEEEecCCCc
Confidence 3799888775322 356889999999998 99999966543
No 204
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=61.48 E-value=57 Score=29.43 Aligned_cols=71 Identities=17% Similarity=0.266 Sum_probs=42.6
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCcE
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADL 153 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 153 (470)
+|||.|+.- || .-+..+|+.|.++|++|.+.-.....+ ....+...|+.+..-.....+. ...+|+
T Consensus 4 ~~~i~~iGi----Gg--~Gms~~A~~L~~~G~~V~~~D~~~~~~-------~~~~L~~~gi~v~~g~~~~~l~-~~~~d~ 69 (326)
T 3eag_A 4 MKHIHIIGI----GG--TFMGGLAAIAKEAGFEVSGCDAKMYPP-------MSTQLEALGIDVYEGFDAAQLD-EFKADV 69 (326)
T ss_dssp CCEEEEESC----CS--HHHHHHHHHHHHTTCEEEEEESSCCTT-------HHHHHHHTTCEEEESCCGGGGG-SCCCSE
T ss_pred CcEEEEEEE----CH--HHHHHHHHHHHhCCCEEEEEcCCCCcH-------HHHHHHhCCCEEECCCCHHHcC-CCCCCE
Confidence 468877762 33 234468899999999999976433221 2334556688776433222211 036899
Q ss_pred EEEcc
Q 012132 154 IVLNT 158 (470)
Q Consensus 154 V~~~~ 158 (470)
|+...
T Consensus 70 vV~Sp 74 (326)
T 3eag_A 70 YVIGN 74 (326)
T ss_dssp EEECT
T ss_pred EEECC
Confidence 88765
No 205
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=61.38 E-value=14 Score=31.98 Aligned_cols=42 Identities=14% Similarity=0.004 Sum_probs=31.3
Q ss_pred ccEEEEEeeccC--------CCch-hHHHHHHHHHHHhCCceEEEEecCCC
Q 012132 74 SKLVLLVSHELS--------LSGG-PLLLMELAFLLRGVGTKVNWITIQKP 115 (470)
Q Consensus 74 ~~kIl~v~~~~~--------~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (470)
|+|||++.+... +.|- +.=+..-...|++.|++|+++++.+.
T Consensus 9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g~ 59 (247)
T 3n7t_A 9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETGT 59 (247)
T ss_dssp CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 479999987631 1355 45566778899999999999997654
No 206
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=61.09 E-value=48 Score=24.62 Aligned_cols=108 Identities=7% Similarity=0.012 Sum_probs=64.6
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHh---cCC
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQL 383 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G~ 383 (470)
.+++|+.+.. .....++...+..|. .|.......+....+. ..|++++-..- .+.-|..+++.+. .++
T Consensus 4 ~~Ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~ 76 (132)
T 3crn_A 4 KRILIVDDDT----AILDSTKQILEFEGY--EVEIAATAGEGLAKIENEFFNLALFXIKL-PDMEGTELLEKAHKLRPGM 76 (132)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEECSBC-SSSBHHHHHHHHHHHCTTS
T ss_pred cEEEEEeCCH----HHHHHHHHHHHHCCc--eEEEeCCHHHHHHHHhcCCCCEEEEecCC-CCCchHHHHHHHHhhCCCC
Confidence 4667777652 356667777776554 3444333334444443 35887764331 2334566666553 467
Q ss_pred CEEec-CCCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 384 PVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 384 PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
|+|.. .... ..+.+..|..|++..|-+ .++|.++|..++.
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~~~ 120 (132)
T 3crn_A 77 KKIMVTGYASLENSVFSLNAGADAYIMKPVN--PRDLLEKIKEKLD 120 (132)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred cEEEEeccccHHHHHHHHhccchhhccCCCC--HHHHHHHHHHHHh
Confidence 77653 3222 233445678899999988 9999999988764
No 207
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=61.05 E-value=34 Score=25.14 Aligned_cols=107 Identities=10% Similarity=0.038 Sum_probs=62.5
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHh-----cC
Q 012132 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA-----FQ 382 (470)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma-----~G 382 (470)
+++|+.+.. .....++...++.|. .+.......+....+. ..|++++-..- .+.-|..+++.+. .+
T Consensus 4 ~ilivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~~ 76 (127)
T 2jba_A 4 RILVVEDEA----PIREMVCFVLEQNGF--QPVEAEDYDSAVNQLNEPWPDLILLAWML-PGGSGIQFIKHLRRESMTRD 76 (127)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEECSHHHHHTTCSSSCCSEEEEESEE-TTEEHHHHHHHHHTSTTTTT
T ss_pred EEEEEcCCH----HHHHHHHHHHHHCCc--eEEEeCCHHHHHHHHhccCCCEEEEecCC-CCCCHHHHHHHHHhCcccCC
Confidence 566776652 356667777766654 3433332222222222 35777764331 2334666777665 45
Q ss_pred CCEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 383 LPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 383 ~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
+|+|... ... ..+.+..|..+++..|-+ .+++.+++..++.
T Consensus 77 ~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~l~~~i~~~~~ 121 (127)
T 2jba_A 77 IPVVMLTARGEEEDRVRGLETGADDCITKPFS--PKELVARIKAVMR 121 (127)
T ss_dssp SCEEEEEETTHHHHHHTTCCCSCSEEEEESCC--HHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCC--HHHHHHHHHHHHh
Confidence 7877542 221 234455677899999988 9999999988764
No 208
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=60.96 E-value=13 Score=34.33 Aligned_cols=73 Identities=15% Similarity=0.193 Sum_probs=42.2
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHH-hhc
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-TAL 149 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 149 (470)
+|++|||.||.. | ..-..++..|.+.||+|.++...... .+.+...|+.. ........ ...
T Consensus 19 Mm~~mkIgiIGl-----G--~mG~~~A~~L~~~G~~V~v~dr~~~~---------~~~l~~~g~~~--~~s~~e~~~~a~ 80 (358)
T 4e21_A 19 YFQSMQIGMIGL-----G--RMGADMVRRLRKGGHECVVYDLNVNA---------VQALEREGIAG--ARSIEEFCAKLV 80 (358)
T ss_dssp ---CCEEEEECC-----S--HHHHHHHHHHHHTTCEEEEECSCHHH---------HHHHHTTTCBC--CSSHHHHHHHSC
T ss_pred hhcCCEEEEECc-----h--HHHHHHHHHHHhCCCEEEEEeCCHHH---------HHHHHHCCCEE--eCCHHHHHhcCC
Confidence 456789999863 2 56678899999999999988532110 11222334332 22223332 335
Q ss_pred CCcEEEEcccch
Q 012132 150 KADLIVLNTAVA 161 (470)
Q Consensus 150 ~~DiV~~~~~~~ 161 (470)
+||+|++..+..
T Consensus 81 ~~DvVi~~vp~~ 92 (358)
T 4e21_A 81 KPRVVWLMVPAA 92 (358)
T ss_dssp SSCEEEECSCGG
T ss_pred CCCEEEEeCCHH
Confidence 679999876554
No 209
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=60.75 E-value=45 Score=24.19 Aligned_cols=107 Identities=12% Similarity=0.156 Sum_probs=63.4
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHh--cCCCE
Q 012132 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA--FQLPV 385 (470)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma--~G~Pv 385 (470)
+++|+.+.. .....++...+..|. .+.......+....+.. .|++++-..- .+.-|..+++.+. ...|+
T Consensus 4 ~ilivdd~~----~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~~~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~~~i 76 (122)
T 1zgz_A 4 HIVIVEDEP----VTQARLQSYFTQEGY--TVSVTASGAGLREIMQNQSVDLILLDINL-PDENGLMLTRALRERSTVGI 76 (122)
T ss_dssp EEEEECSSH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHTTCCCEE
T ss_pred EEEEEECCH----HHHHHHHHHHHHCCC--eEEEecCHHHHHHHHhcCCCCEEEEeCCC-CCCChHHHHHHHHhcCCCCE
Confidence 566666642 356667777766553 34444333444444433 5887764431 3334666776664 35676
Q ss_pred Eec-CCCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 386 LGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 386 I~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
|.. ..+. ..+.+..|..+++..|-+ .+++...|..++.
T Consensus 77 i~~s~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~l~~~i~~~~~ 118 (122)
T 1zgz_A 77 ILVTGRSDRIDRIVGLEMGADDYVTKPLE--LRELVVRVKNLLW 118 (122)
T ss_dssp EEEESSCCHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred EEEECCCChhhHHHHHHhCHHHHccCCCC--HHHHHHHHHHHHH
Confidence 643 3222 233344577899999988 9999999887653
No 210
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=60.66 E-value=15 Score=31.81 Aligned_cols=43 Identities=19% Similarity=0.158 Sum_probs=30.1
Q ss_pred cccEEEEEeecc----C----CCch-hHHHHHHHHHHHhCCceEEEEecCCC
Q 012132 73 KSKLVLLVSHEL----S----LSGG-PLLLMELAFLLRGVGTKVNWITIQKP 115 (470)
Q Consensus 73 ~~~kIl~v~~~~----~----~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (470)
.|+|||++.... . +.|. ..-+......|.+.|++|++++..+.
T Consensus 2 ~m~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~g~ 53 (243)
T 1rw7_A 2 APKKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETGK 53 (243)
T ss_dssp CCCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CCceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 457899998742 2 1444 24455667788889999999997654
No 211
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=60.63 E-value=9.7 Score=31.54 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=27.4
Q ss_pred ccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
||||+++..+...+|. ...+..+++.+. .|++|.++...
T Consensus 2 M~kilii~gS~r~~s~t~~la~~~~~~~~-~~~~v~~~dl~ 41 (192)
T 3fvw_A 2 SKRILFIVGSFSEGSFNRQLAKKAETIIG-DRAQVSYLSYD 41 (192)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHHHHT-TSSEEEECCCS
T ss_pred CCEEEEEEcCCCCCCHHHHHHHHHHHhcC-CCCEEEEEeCc
Confidence 5799999977665665 455666666665 68999988744
No 212
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=60.46 E-value=49 Score=24.59 Aligned_cols=111 Identities=11% Similarity=0.108 Sum_probs=62.8
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHh---cCC
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQL 383 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G~ 383 (470)
.+++|+.+.. .....++...+..+--..|.......+....+. ..|++++-..- .+.-|..+++.+. ..+
T Consensus 4 ~~Ilivdd~~----~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~~dlvilD~~l-p~~~g~~~~~~l~~~~~~~ 78 (133)
T 3b2n_A 4 TSLIIAEDQN----MLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEM-PGMTGLEVLAEIRKKHLNI 78 (133)
T ss_dssp EEEEEECSCH----HHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHCCSEEEECSSC-SSSCHHHHHHHHHHTTCSC
T ss_pred eEEEEECCCH----HHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcCCCEEEEecCC-CCCCHHHHHHHHHHHCCCC
Confidence 4566766642 355666666665531111222222233333333 35888865431 2334566666664 357
Q ss_pred CEEec-CCCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 384 PVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 384 PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
|+|.. .... ..+.+..|..|++..|.+ .++|.++|..++..
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~L~~~i~~~~~~ 123 (133)
T 3b2n_A 79 KVIIVTTFKRPGYFEKAVVNDVDAYVLKERS--IEELVETINKVNNG 123 (133)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEETTSC--HHHHHHHHHHHHC-
T ss_pred cEEEEecCCCHHHHHHHHHcCCcEEEECCCC--HHHHHHHHHHHHcC
Confidence 77653 3222 233445677899999988 99999999888754
No 213
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A*
Probab=60.39 E-value=27 Score=27.89 Aligned_cols=84 Identities=14% Similarity=-0.059 Sum_probs=41.5
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHH-hCC--ceEEEEecCCCC--CchhHHHhhhhhhhhcceeeEecCChhhHH
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLR-GVG--TKVNWITIQKPS--EEDEVIYSLEHKMWDRGVQVISAKGQETIN 146 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~-~~G--~~V~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (470)
|+|+|||||+..- ..-+..+..+.+.+. +.| ..+.+.+..-.. ............+.+.|+.+ .. ..+.+.
T Consensus 2 ~~m~~vLFVC~gN--~cRSpmAE~~~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~~~a~~~l~~~Gid~-~~-~ar~l~ 77 (161)
T 3jvi_A 2 PGSMKLLFVCLGN--ICRSPAAEAVMKKVIQNHHLTEKYICDSAGTCSYHEGQQADSRMRKVGKSRGYQV-DS-ISRPVV 77 (161)
T ss_dssp --CEEEEEEESSS--SSHHHHHHHHHHHHHHHTTCGGGEEEEEEESCCTTTTCBCCHHHHHHHHHTTCCC-CC-BCCBCC
T ss_pred CCCcEEEEECCCc--hhHHHHHHHHHHHHHHHcCCCCcEEEEeeecCCcccCCCCCHHHHHHHHHcCcCC-CC-eeeECC
Confidence 4578999999632 111344555555554 344 356666622111 01111122344556677776 32 222221
Q ss_pred --hhcCCcEEEEccc
Q 012132 147 --TALKADLIVLNTA 159 (470)
Q Consensus 147 --~~~~~DiV~~~~~ 159 (470)
....+|+|++-+.
T Consensus 78 ~~~~~~~DlIl~Md~ 92 (161)
T 3jvi_A 78 SSDFKNFDYIFAMDN 92 (161)
T ss_dssp HHHHHHCSEEEESSH
T ss_pred HHHhcCCCEEEEeCh
Confidence 2246999999764
No 214
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=60.27 E-value=11 Score=30.11 Aligned_cols=38 Identities=16% Similarity=0.038 Sum_probs=28.3
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|||+++..+. .|..+..+..+++.|.+.|++|.++...
T Consensus 1 Mkv~IvY~S~-tGnT~~~A~~ia~~l~~~g~~v~~~~~~ 38 (161)
T 3hly_A 1 MSVLIGYLSD-YGYSDRLSQAIGRGLVKTGVAVEMVDLR 38 (161)
T ss_dssp -CEEEEECTT-STTHHHHHHHHHHHHHHTTCCEEEEETT
T ss_pred CEEEEEEECC-ChHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 5777775332 2445899999999999999999888644
No 215
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=60.25 E-value=12 Score=30.85 Aligned_cols=38 Identities=21% Similarity=0.171 Sum_probs=30.0
Q ss_pred ccEEEEEeeccCCCch-hHHHHHHHHHHHh-CCceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGG-PLLLMELAFLLRG-VGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~-~G~~V~v~~~~ 113 (470)
||||+++..+ ..|. +..+..+++.|.+ .|++|.++...
T Consensus 4 M~kiliiy~S--~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~ 43 (188)
T 2ark_A 4 MGKVLVIYDT--RTGNTKKMAELVAEGARSLEGTEVRLKHVD 43 (188)
T ss_dssp CEEEEEEECC--SSSHHHHHHHHHHHHHHTSTTEEEEEEETT
T ss_pred CCEEEEEEEC--CCcHHHHHHHHHHHHHhhcCCCeEEEEEhh
Confidence 4689988755 4454 7888999999998 89999988643
No 216
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=60.16 E-value=47 Score=24.18 Aligned_cols=107 Identities=8% Similarity=0.084 Sum_probs=63.6
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHh--cCCCE
Q 012132 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLPV 385 (470)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma--~G~Pv 385 (470)
+++|+.+.. .....++...++.|. .|.......+..+.+. ..|++++-..- .+.-|..+++.+. .++|+
T Consensus 4 ~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlii~D~~~-p~~~g~~~~~~lr~~~~~~i 76 (120)
T 3f6p_A 4 KILVVDDEK----PIADILEFNLRKEGY--EVHCAHDGNEAVEMVEELQPDLILLDIML-PNKDGVEVCREVRKKYDMPI 76 (120)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHTTCCSEEEEETTS-TTTHHHHHHHHHHTTCCSCE
T ss_pred eEEEEECCH----HHHHHHHHHHHhCCE--EEEEeCCHHHHHHHHhhCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCCCE
Confidence 566666642 356666777776654 3444333334444443 35777764431 3344566666553 36787
Q ss_pred EecCC-CC---cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 386 LGTAA-GG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 386 I~s~~-~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
|.... .. ..+.+..|..+++..|-+ .+++..++..++.
T Consensus 77 i~~t~~~~~~~~~~~~~~ga~~~l~KP~~--~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 77 IMLTAKDSEIDKVIGLEIGADDYVTKPFS--TRELLARVKANLR 118 (120)
T ss_dssp EEEEESSCHHHHHHHHHTTCCEEEEESCC--HHHHHHHHHHHHT
T ss_pred EEEECCCChHHHHHHHhCCcceeEcCCCC--HHHHHHHHHHHHh
Confidence 75432 22 223345678899999988 9999999988764
No 217
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=59.90 E-value=17 Score=33.15 Aligned_cols=45 Identities=18% Similarity=0.039 Sum_probs=32.8
Q ss_pred ccccccEEEEEeeccCCCc-hhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 70 SFMKSKLVLLVSHELSLSG-GPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 70 ~~~~~~kIl~v~~~~~~~G-~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
..||++|++++.+..+.+| +.+....+...|.+.|+++.+.....
T Consensus 20 ~~m~m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~ 65 (337)
T 2qv7_A 20 SHMMRKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEK 65 (337)
T ss_dssp CCSCCEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCS
T ss_pred cccccceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecC
Confidence 3455678988887655433 34677889999999999998886543
No 218
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=59.59 E-value=54 Score=24.74 Aligned_cols=66 Identities=6% Similarity=-0.031 Sum_probs=40.0
Q ss_pred cCEEEEccCCcccccchHHHHHHh---cCCCEEecC-CC---CcceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 357 IDVLVQNSQAWGECFGRITIEAMA---FQLPVLGTA-AG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 357 aDv~v~pS~~~~E~~g~~~lEAma---~G~PvI~s~-~~---g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
.|++++-..- .+.-|..+++.+. .++|+|... .. ...+.+..|..+++..|-+ .++|.++|..++.
T Consensus 50 ~dlvllD~~l-p~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 50 PNVLLTDVRM-PRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPID--PSEIMDALKQSIQ 122 (141)
T ss_dssp CSEEEEESCC-SSSCHHHHHHHHHHHCTTCEEEEECCSTTTCCC------CCCEEECSSCC--HHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHHhhCCCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCC--HHHHHHHHHHHHH
Confidence 5888764431 3334566666653 467777542 22 2344555678899999988 9999999988764
No 219
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=59.47 E-value=36 Score=30.90 Aligned_cols=79 Identities=9% Similarity=-0.005 Sum_probs=49.6
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
..+||+++... ..+++..++..+...|.+|+++++..-.+...............|..+......... ....|
T Consensus 154 ~gl~ia~vGD~-----~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~ea--v~~aD 226 (333)
T 1duv_G 154 NEMTLVYAGDA-----RNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKG--VEGAD 226 (333)
T ss_dssp GGCEEEEESCT-----TSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHH--HTTCS
T ss_pred CCcEEEEECCC-----ccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHH--hCCCC
Confidence 45789998752 148999999999999999999997654443333322233333556444333333322 24689
Q ss_pred EEEEcc
Q 012132 153 LIVLNT 158 (470)
Q Consensus 153 iV~~~~ 158 (470)
+|+...
T Consensus 227 vvytd~ 232 (333)
T 1duv_G 227 FIYTDV 232 (333)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 998854
No 220
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=59.41 E-value=54 Score=29.72 Aligned_cols=68 Identities=16% Similarity=0.059 Sum_probs=45.8
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhcCCC
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (470)
++++++.+-+. ..+..++.+++++.. . . ..++.++++ .+|+++..+. .....-.+.+|+..|++
T Consensus 32 ~~~~~vav~d~------~~~~~~~~a~~~g~~-~--~---~~~~~~~l~~~~~D~V~i~tp--~~~h~~~~~~al~~G~~ 97 (346)
T 3cea_A 32 QGVKLVAACAL------DSNQLEWAKNELGVE-T--T---YTNYKDMIDTENIDAIFIVAP--TPFHPEMTIYAMNAGLN 97 (346)
T ss_dssp SSEEEEEEECS------CHHHHHHHHHTTCCS-E--E---ESCHHHHHTTSCCSEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEecC------CHHHHHHHHHHhCCC-c--c---cCCHHHHhcCCCCCEEEEeCC--hHhHHHHHHHHHHCCCE
Confidence 67887766553 245566677777642 1 1 156777776 5899998776 44444556789999999
Q ss_pred EEec
Q 012132 385 VLGT 388 (470)
Q Consensus 385 vI~s 388 (470)
|++-
T Consensus 98 v~~e 101 (346)
T 3cea_A 98 VFCE 101 (346)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9984
No 221
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=59.26 E-value=11 Score=29.46 Aligned_cols=34 Identities=24% Similarity=0.154 Sum_probs=26.1
Q ss_pred cEEEEEeeccCCCc-hhHHHHHHHHHHHhCCceEEEE
Q 012132 75 KLVLLVSHELSLSG-GPLLLMELAFLLRGVGTKVNWI 110 (470)
Q Consensus 75 ~kIl~v~~~~~~~G-~~~~~~~l~~~L~~~G~~V~v~ 110 (470)
|||+++- .+..| .+..+..+++.|.+.|++|.++
T Consensus 2 ~ki~I~Y--~S~tGnT~~~A~~ia~~l~~~g~~v~~~ 36 (147)
T 2hna_A 2 ADITLIS--GSTLGGAEYVAEHLAEKLEEAGFTTETL 36 (147)
T ss_dssp CSEEEEC--CTTSCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEE--ECCchHHHHHHHHHHHHHHHCCCceEEe
Confidence 4676664 34444 4899999999999999998876
No 222
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=59.17 E-value=54 Score=24.60 Aligned_cols=109 Identities=8% Similarity=0.015 Sum_probs=63.2
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHh------
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA------ 380 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma------ 380 (470)
.+++|+.+.. .....++...+..|. .+.......+....+.. .|++++-..- .+.-|+.+++.+.
T Consensus 11 ~~iLivdd~~----~~~~~l~~~L~~~~~--~v~~~~~~~~al~~l~~~~~dlvllD~~l-p~~~g~~~~~~l~~~~~~~ 83 (140)
T 3c97_A 11 LSVLIAEDND----ICRLVAAKALEKCTN--DITVVTNGLQALQAYQNRQFDVIIMDIQM-PVMDGLEAVSEIRNYERTH 83 (140)
T ss_dssp CEEEEECCCH----HHHHHHHHHHTTTCS--EEEEESSHHHHHHHHHHSCCSEEEECTTC-CSSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCH----HHHHHHHHHHHHcCC--ceEEECCHHHHHHHHhcCCCCEEEEeCCC-CCCcHHHHHHHHHhhhhhc
Confidence 4677777652 345556666665442 45544443444444433 5888864431 2334566666654
Q ss_pred --cCCCEEec-CCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 381 --FQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 381 --~G~PvI~s-~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
..+|+|.. ...........|..|++..|-+ .++|.++|..++..
T Consensus 84 ~~~~~~ii~~s~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 84 NTKRASIIAITADTIDDDRPGAELDEYVSKPLN--PNQLRDVVLTCHSE 130 (140)
T ss_dssp TCCCCCCEEEESSCCSCCCCCSSCSEEEESSCC--HHHHHHHHHHHHC-
T ss_pred CCCceEEEEEeCccchhHHHhCChhheEeCCCC--HHHHHHHHHHHhCC
Confidence 34666654 2222222234455789999988 99999999888753
No 223
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=58.76 E-value=38 Score=30.81 Aligned_cols=79 Identities=9% Similarity=0.053 Sum_probs=49.2
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
..+||+++... ..+++..++..+...|.+|+++++..-.+...............|..+......... ....|
T Consensus 154 ~gl~va~vGD~-----~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~ea--v~~aD 226 (335)
T 1dxh_A 154 HDISYAYLGDA-----RNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEA--VKGVD 226 (335)
T ss_dssp GGCEEEEESCC-----SSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHH--TTTCS
T ss_pred CCeEEEEecCC-----ccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHH--hCCCC
Confidence 45789998762 148999999999999999999997654443333222233333455444333333222 24688
Q ss_pred EEEEcc
Q 012132 153 LIVLNT 158 (470)
Q Consensus 153 iV~~~~ 158 (470)
+|+...
T Consensus 227 vvytd~ 232 (335)
T 1dxh_A 227 FVHTDV 232 (335)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 888853
No 224
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=58.57 E-value=20 Score=30.36 Aligned_cols=40 Identities=23% Similarity=0.172 Sum_probs=28.0
Q ss_pred ccEEEEEeeccCC----Cch-hHHHHHHHHHHHhCCceEEEEecC
Q 012132 74 SKLVLLVSHELSL----SGG-PLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~----~G~-~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|||||+|...... ++. ...+..+++.+.+.|++|.++...
T Consensus 25 M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~ 69 (218)
T 3rpe_A 25 MSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVD 69 (218)
T ss_dssp CCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECC
Confidence 4789999865432 233 355566777788899999998754
No 225
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=58.31 E-value=10 Score=31.34 Aligned_cols=40 Identities=10% Similarity=-0.025 Sum_probs=30.0
Q ss_pred ccEEEEEeeccCC-Cch-hHHHHHHHHHHHhCC--ceEEEEecC
Q 012132 74 SKLVLLVSHELSL-SGG-PLLLMELAFLLRGVG--TKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~-~G~-~~~~~~l~~~L~~~G--~~V~v~~~~ 113 (470)
|||||++..+... +|. ...+..+++.|.+.| ++|.++-..
T Consensus 1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~ 44 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLA 44 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETT
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 3799999876553 344 577788888998876 899988754
No 226
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=58.15 E-value=48 Score=30.45 Aligned_cols=82 Identities=9% Similarity=0.065 Sum_probs=47.5
Q ss_pred cccE--EEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC-CCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhc
Q 012132 73 KSKL--VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ-KPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTAL 149 (470)
Q Consensus 73 ~~~k--Il~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (470)
..+| |+++.. ...+| .+++..++..+...|.+|+++++. .-.................|..+.......... .
T Consensus 189 ~glkvvva~vGD-l~~~~-nrva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~eav--~ 264 (359)
T 1zq6_A 189 RGKKYVLTWTYH-PKPLN-TAVANSALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHDIDSAY--A 264 (359)
T ss_dssp TTCEEEEEECCC-SSCCC-SHHHHHHHHHHHHTTCEEEEECSSGGGCCCHHHHHHHHHHHHHHSCEEEEECCHHHHH--T
T ss_pred cCCeeEEEEEec-ccccc-cchHHHHHHHHHHcCCEEEEEcCccccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHh--c
Confidence 4578 666654 33333 689999999999999999999876 433332222222222234444443333332222 3
Q ss_pred CCcEEEEcc
Q 012132 150 KADLIVLNT 158 (470)
Q Consensus 150 ~~DiV~~~~ 158 (470)
..|+|+.-.
T Consensus 265 ~aDvVyt~~ 273 (359)
T 1zq6_A 265 GADVVYAKS 273 (359)
T ss_dssp TCSEEEEEC
T ss_pred CCCEEEECC
Confidence 678888753
No 227
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=58.10 E-value=49 Score=27.31 Aligned_cols=111 Identities=12% Similarity=0.195 Sum_probs=62.3
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH---------------hcCEEEEccCCcccccc
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---------------AIDVLVQNSQAWGECFG 372 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~---------------~aDv~v~pS~~~~E~~g 372 (470)
..+++|+-+.. .....++.+.++.|.. .|.......+..+++. ..|++++-..- .+.-|
T Consensus 61 ~~~ILiVdDd~----~~~~~l~~~L~~~g~~-~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~l-p~~~G 134 (206)
T 3mm4_A 61 GKRVLVVDDNF----ISRKVATGKLKKMGVS-EVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQM-PEMDG 134 (206)
T ss_dssp TCEEEEECSCH----HHHHHHHHHHHHTTCS-EEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCC-SSSCH
T ss_pred CCEEEEEeCCH----HHHHHHHHHHHHcCCC-eeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCC-CCCCH
Confidence 45666666542 3555666666666542 3444444334444443 36887764431 34446
Q ss_pred hHHHHHHh-------cCCCEEecCC-C-C---cceeeecCceeeeecCCCCChHHHHHHHHHHHhCHH
Q 012132 373 RITIEAMA-------FQLPVLGTAA-G-G---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 428 (470)
Q Consensus 373 ~~~lEAma-------~G~PvI~s~~-~-g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~ 428 (470)
+.+++.+. ..+|||.... . . ..+.+..|..+++..|- ++|.++|..++....
T Consensus 135 ~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~----~~L~~~i~~~l~~~~ 198 (206)
T 3mm4_A 135 YEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSL----NQLANVIREIESKRH 198 (206)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTC----TTHHHHHHHHC----
T ss_pred HHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcH----HHHHHHHHHHHhhhH
Confidence 66776654 4678875432 2 2 22344567788998874 389999988886543
No 228
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=58.06 E-value=46 Score=29.92 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=25.9
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
+|+||+.. |....-..+++.|.++||+|.+++...
T Consensus 13 ~M~ilVtG------atG~iG~~l~~~L~~~g~~V~~~~r~~ 47 (342)
T 2x4g_A 13 HVKYAVLG------ATGLLGHHAARAIRAAGHDLVLIHRPS 47 (342)
T ss_dssp CCEEEEES------TTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCEEEEEC------CCcHHHHHHHHHHHHCCCEEEEEecCh
Confidence 46887664 334567778889999999999988543
No 229
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=57.90 E-value=13 Score=31.26 Aligned_cols=39 Identities=15% Similarity=-0.045 Sum_probs=27.7
Q ss_pred cccEEEEEeeccCCCchhHH--HHHHHHHHHhCCceEEEEecCCC
Q 012132 73 KSKLVLLVSHELSLSGGPLL--LMELAFLLRGVGTKVNWITIQKP 115 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~--~~~l~~~L~~~G~~V~v~~~~~~ 115 (470)
+++||++-.+. |+..+ ..++++.|.+.|++|.++.....
T Consensus 4 ~~k~IllgiTG----siaayk~~~~ll~~L~~~g~eV~vv~T~~A 44 (207)
T 3mcu_A 4 KGKRIGFGFTG----SHCTYEEVMPHLEKLIAEGAEVRPVVSYTV 44 (207)
T ss_dssp TTCEEEEEECS----CGGGGTTSHHHHHHHHHTTCEEEEEECC--
T ss_pred CCCEEEEEEEC----hHHHHHHHHHHHHHHHhCCCEEEEEEehHH
Confidence 45688776642 33344 78999999999999999986544
No 230
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=57.88 E-value=54 Score=24.58 Aligned_cols=110 Identities=14% Similarity=0.027 Sum_probs=64.4
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHh-----c
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA-----F 381 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma-----~ 381 (470)
.+++|+.+.. .....++...+..|. .|.......+....+.. .|++++-..- .+.-|+.+++.+. .
T Consensus 4 ~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~ 76 (138)
T 3c3m_A 4 YTILVVDDSP----MIVDVFVTMLERGGY--RPITAFSGEECLEALNATPPDLVLLDIMM-EPMDGWETLERIKTDPATR 76 (138)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHHSTTTT
T ss_pred ceEEEEeCCH----HHHHHHHHHHHHcCc--eEEEeCCHHHHHHHHhccCCCEEEEeCCC-CCCCHHHHHHHHHcCcccC
Confidence 4667777652 356667777776654 34433333344444443 5887764431 3344677777774 2
Q ss_pred CCCEEec-CCCCcce-eee--cCceeeeecCCCCChHHHHHHHHHHHhCH
Q 012132 382 QLPVLGT-AAGGTTE-IVV--NGTTGLLHPVGKEGITPLAKNIVKLATHV 427 (470)
Q Consensus 382 G~PvI~s-~~~g~~e-~v~--~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 427 (470)
.+|||.. ....... ... -+..+++..|.+ .++|.++|..++...
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~--~~~L~~~i~~~~~~~ 124 (138)
T 3c3m_A 77 DIPVLMLTAKPLTPEEANEYGSYIEDYILKPTT--HHQLYEAIEHVLARR 124 (138)
T ss_dssp TSCEEEEESSCCCHHHHHHTTTTCSEEEECCCH--HHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCChHHHHHHhhcCHhheEeCCCC--HHHHHHHHHHHHHHh
Confidence 5788753 3222211 111 123589999888 999999999988653
No 231
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=57.83 E-value=23 Score=31.41 Aligned_cols=92 Identities=12% Similarity=0.023 Sum_probs=53.7
Q ss_pred CHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeee-----------------c-Ccee-----ee
Q 012132 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVV-----------------N-GTTG-----LL 405 (470)
Q Consensus 349 ~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~-----------------~-~~~G-----~l 405 (470)
.-..-++.||++|..... .|++--.+++++.....+++....|+.-+-. + ...| +.
T Consensus 41 ~d~~~l~~Adlvv~~G~~-~E~w~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~dPH~W 119 (284)
T 2prs_A 41 SDVKRLQNADLVVWVGPE-MEAFMQKPVSKLPGAKQVTIAQLEDVKPLLMKSIHGDDDDHDHAEKSDEDHHHGDFNMHLW 119 (284)
T ss_dssp THHHHHHHCSEEEECCTT-TCGGGHHHHHTSCGGGEEEGGGCTTTGGGCCC---------------------CCCCCCGG
T ss_pred HHHHHHHcCCEEEEcCCC-cHHHHHHHHHhcCCCCcEEEecCCCcccccccccccccccccccccccccCCCCCCCCccc
Confidence 345668999999988763 7888778887765433344432223211100 0 0011 33
Q ss_pred ecCCCCChHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHH
Q 012132 406 HPVGKEGITPLAKNIVKLAT--HVERRLTMGKRGYERVKE 443 (470)
Q Consensus 406 ~~~~d~~~~~la~~i~~ll~--~~~~~~~~~~~a~~~~~~ 443 (470)
.+|.+ ...+++.|.+.|. ||+-.....+|+.++..+
T Consensus 120 ldp~~--~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~ 157 (284)
T 2prs_A 120 LSPEI--ARATAVAIHGKLVELMPQSRAKLDANLKDFEAQ 157 (284)
T ss_dssp GCHHH--HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred CCHHH--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 34433 6677777777766 787777777777776644
No 232
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=57.43 E-value=22 Score=32.27 Aligned_cols=69 Identities=14% Similarity=0.107 Sum_probs=42.7
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhcCCC
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (470)
+++.++-+-+.. .+..++++++++.+. ...++.++++ ..|+++..+. ...-.-.+.+|+..|++
T Consensus 28 ~~~~~~av~d~~------~~~~~~~a~~~~~~~------~~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGk~ 93 (329)
T 3evn_A 28 GNGEVVAVSSRT------LESAQAFANKYHLPK------AYDKLEDMLADESIDVIYVATI--NQDHYKVAKAALLAGKH 93 (329)
T ss_dssp CSEEEEEEECSC------SSTTCC---CCCCSC------EESCHHHHHTCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEEcCC------HHHHHHHHHHcCCCc------ccCCHHHHhcCCCCCEEEECCC--cHHHHHHHHHHHHCCCe
Confidence 678777555532 122334445554321 1267788887 7899988776 44444557789999999
Q ss_pred EEecC
Q 012132 385 VLGTA 389 (470)
Q Consensus 385 vI~s~ 389 (470)
|++-.
T Consensus 94 Vl~EK 98 (329)
T 3evn_A 94 VLVEK 98 (329)
T ss_dssp EEEES
T ss_pred EEEcc
Confidence 99753
No 233
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=57.38 E-value=56 Score=24.23 Aligned_cols=110 Identities=8% Similarity=0.031 Sum_probs=65.9
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHh---cCC
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQL 383 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G~ 383 (470)
.+++|+.+.. .....+....+..|. .|.......+....+. ..|++++-..- .+.-|..+++.+. ..+
T Consensus 4 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~ 76 (136)
T 1mvo_A 4 KKILVVDDEE----SIVTLLQYNLERSGY--DVITASDGEEALKKAETEKPDLIVLDVML-PKLDGIEVCKQLRQQKLMF 76 (136)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHHCCSEEEEESSC-SSSCHHHHHHHHHHTTCCC
T ss_pred CEEEEEECCH----HHHHHHHHHHHHCCc--EEEEecCHHHHHHHHhhcCCCEEEEecCC-CCCCHHHHHHHHHcCCCCC
Confidence 4677777652 356667777776654 3444333333334433 35888765431 3334566666554 457
Q ss_pred CEEec-CCCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhCH
Q 012132 384 PVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 427 (470)
Q Consensus 384 PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 427 (470)
|+|.. ..+. ..+.+..|..+++..|-+ .+++...+..++...
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 77 PILMLTAKDEEFDKVLGLELGADDYMTKPFS--PREVNARVKAILRRS 122 (136)
T ss_dssp CEEEEECTTCCCCHHHHHHTTCCEEEESSCC--HHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCHHHHHHHHhCCCCEEEECCCC--HHHHHHHHHHHHHhh
Confidence 77653 3222 223345577899999988 999999999887653
No 234
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=57.37 E-value=14 Score=30.65 Aligned_cols=40 Identities=18% Similarity=0.060 Sum_probs=28.0
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
|+++|++++.+...+...+.+.+.+..+.+.|++|.++..
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~idl 40 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLLHI 40 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEECCG
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEEec
Confidence 4578999987776666555555555666677899998863
No 235
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=57.34 E-value=12 Score=34.19 Aligned_cols=38 Identities=13% Similarity=-0.030 Sum_probs=27.9
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCC
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (470)
|++|+||+.. |....-..+++.|.++||+|.++.....
T Consensus 23 ~~~~~vlVtG------atG~iG~~l~~~L~~~g~~V~~~~r~~~ 60 (351)
T 3ruf_A 23 FSPKTWLITG------VAGFIGSNLLEKLLKLNQVVIGLDNFST 60 (351)
T ss_dssp HSCCEEEEET------TTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred CCCCeEEEEC------CCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4567887664 3345677889999999999999985443
No 236
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=57.32 E-value=13 Score=28.97 Aligned_cols=36 Identities=22% Similarity=0.154 Sum_probs=27.4
Q ss_pred cEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEec
Q 012132 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
|||+++.. +..|. +..+..+++.|.+.|++|.++..
T Consensus 1 mki~iiy~--S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~ 37 (147)
T 1f4p_A 1 PKALIVYG--STTGNTEYTAETIARELADAGYEVDSRDA 37 (147)
T ss_dssp CEEEEEEE--CSSSHHHHHHHHHHHHHHHHTCEEEEEEG
T ss_pred CeEEEEEE--CCcCHHHHHHHHHHHHHHhcCCeeEEEeh
Confidence 57777753 33454 78889999999999999988753
No 237
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=57.13 E-value=9.3 Score=31.79 Aligned_cols=66 Identities=21% Similarity=0.204 Sum_probs=39.0
Q ss_pred HHHHhcCEEEEccCCcccccc--hHHHHHHhcCCCEEecCCCC-ccee----ee------cCceeeeecCCCCChHHHHH
Q 012132 352 PYLAAIDVLVQNSQAWGECFG--RITIEAMAFQLPVLGTAAGG-TTEI----VV------NGTTGLLHPVGKEGITPLAK 418 (470)
Q Consensus 352 ~~~~~aDv~v~pS~~~~E~~g--~~~lEAma~G~PvI~s~~~g-~~e~----v~------~~~~G~l~~~~d~~~~~la~ 418 (470)
-+...||++|.-- -++| ..+.||+..|+||++-+..| ..+. +. ......+.-.+| ++++.+
T Consensus 114 ~m~~~sda~Ivlp----GG~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~--~ee~~~ 187 (195)
T 1rcu_A 114 VLLRNADVVVSIG----GEIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWT--VEEAVQ 187 (195)
T ss_dssp HHHTTCSEEEEES----CCHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESS--HHHHHH
T ss_pred HHHHhCCEEEEec----CCCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCC--HHHHHH
Confidence 4567789887542 2344 45678999999999997544 2222 21 112223333444 888887
Q ss_pred HHHHH
Q 012132 419 NIVKL 423 (470)
Q Consensus 419 ~i~~l 423 (470)
.|.++
T Consensus 188 ~l~~~ 192 (195)
T 1rcu_A 188 IIEQI 192 (195)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 77543
No 238
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=56.99 E-value=21 Score=32.21 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=24.0
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhC-C-ceEEEEecC
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGV-G-TKVNWITIQ 113 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~-G-~~V~v~~~~ 113 (470)
|++||||++.. |.+ ..+++.|++. | ++|.++...
T Consensus 2 m~~~~Ili~g~------g~~--~~l~~~l~~~~~~~~v~~~d~~ 37 (331)
T 2pn1_A 2 MQKPHLLITSA------GRR--AKLVEYFVKEFKTGRVSTADCS 37 (331)
T ss_dssp TTCCEEEEESC------TTC--HHHHHHHHHHCCSSEEEEEESC
T ss_pred CccceEEEecC------Cch--HHHHHHHHHhcCCCEEEEEeCC
Confidence 77899999752 223 4788888875 6 887777543
No 239
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=56.99 E-value=14 Score=31.25 Aligned_cols=37 Identities=11% Similarity=-0.025 Sum_probs=28.0
Q ss_pred cccccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 69 ~~~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
...|++|||.++.. ...-..+++.|.+.|++|.++..
T Consensus 18 ~~~m~mmkI~IIG~-------G~mG~~la~~l~~~g~~V~~v~~ 54 (220)
T 4huj_A 18 LYFQSMTTYAIIGA-------GAIGSALAERFTAAQIPAIIANS 54 (220)
T ss_dssp TTGGGSCCEEEEEC-------HHHHHHHHHHHHHTTCCEEEECT
T ss_pred hhhhcCCEEEEECC-------CHHHHHHHHHHHhCCCEEEEEEC
Confidence 34566789999863 35667789999999999988543
No 240
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=56.79 E-value=78 Score=26.89 Aligned_cols=109 Identities=6% Similarity=0.021 Sum_probs=64.5
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHh---cC
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQ 382 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G 382 (470)
..+++|+.+.. .....++...+..|. .|.......+..+.+. ..|++++--. -.+.-|+.+++.+. ..
T Consensus 23 ~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvllD~~-lp~~~g~~~~~~lr~~~~~ 95 (250)
T 3r0j_A 23 EARVLVVDDEA----NIVELLSVSLKFQGF--EVYTATNGAQALDRARETRPDAVILDVX-MPGMDGFGVLRRLRADGID 95 (250)
T ss_dssp SCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHHCCSEEEEESC-CSSSCHHHHHHHHHHTTCC
T ss_pred CceEEEEECCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHHhCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCC
Confidence 45677776642 345556666665553 3433333233333332 3577776433 13445666776654 35
Q ss_pred CCEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 383 LPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 383 ~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
+|||.-. ... ..+.+..|..|++..|.+ .++|..+|..++.
T Consensus 96 ~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~--~~~L~~~i~~~~~ 140 (250)
T 3r0j_A 96 APALFLTARDSLQDKIAGLTLGGDDYVTKPFS--LEEVVARLRVILR 140 (250)
T ss_dssp CCEEEEECSTTHHHHHHHHTSTTCEEEESSCC--HHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHcCCcEEEeCCCC--HHHHHHHHHHHHH
Confidence 7777543 222 233455678899999988 9999999998875
No 241
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=56.59 E-value=33 Score=31.22 Aligned_cols=94 Identities=11% Similarity=0.027 Sum_probs=59.1
Q ss_pred CCCeEEEEEeec-ccCCCHHHHHHHHHHHHHHHHhhcccC-CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEec
Q 012132 268 NEDLLFAIINSV-SRGKGQDLFLHSFYESLELIKEKKLEV-PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345 (470)
Q Consensus 268 ~~~~~i~~vGrl-~~~Kg~~~ll~a~~~l~~~l~~~~~~~-~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g 345 (470)
.+++.++.+|-= .-. ...+.++. +. ++++++-+-+. ..+..++++++++.. .
T Consensus 16 ~~~irvgiIG~G~~~g---~~~~~~l~-----------~~~~~~~lvav~d~------~~~~~~~~a~~~~~~---~--- 69 (340)
T 1zh8_A 16 LRKIRLGIVGCGIAAR---ELHLPALK-----------NLSHLFEITAVTSR------TRSHAEEFAKMVGNP---A--- 69 (340)
T ss_dssp CCCEEEEEECCSHHHH---HTHHHHHH-----------TTTTTEEEEEEECS------SHHHHHHHHHHHSSC---E---
T ss_pred CCceeEEEEecCHHHH---HHHHHHHH-----------hCCCceEEEEEEcC------CHHHHHHHHHHhCCC---c---
Confidence 466788888741 011 12333333 23 67888766654 345667777777642 1
Q ss_pred ccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhcCCCEEecC
Q 012132 346 KTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389 (470)
Q Consensus 346 ~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~ 389 (470)
..+++.++++ ..|+++..+- ...-.-.+.+|+..|++|++-.
T Consensus 70 ~~~~~~~ll~~~~vD~V~i~tp--~~~H~~~~~~al~aGkhVl~EK 113 (340)
T 1zh8_A 70 VFDSYEELLESGLVDAVDLTLP--VELNLPFIEKALRKGVHVICEK 113 (340)
T ss_dssp EESCHHHHHHSSCCSEEEECCC--GGGHHHHHHHHHHTTCEEEEES
T ss_pred ccCCHHHHhcCCCCCEEEEeCC--chHHHHHHHHHHHCCCcEEEeC
Confidence 1267788887 4799998876 4444455678999999998853
No 242
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=56.50 E-value=37 Score=31.25 Aligned_cols=78 Identities=8% Similarity=0.015 Sum_probs=50.5
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
..++|+++... -.+++..++..+...|.+|.++++..-.+...............|..+.......... ...|
T Consensus 180 ~gl~ia~vGD~-----~~~va~S~~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~v~~~~d~~eav--~~aD 252 (358)
T 4h31_A 180 ADIQFAYLGDA-----RNNVGNSLMVGAAKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAEGV--QGCD 252 (358)
T ss_dssp GGCEEEEESCT-----TSHHHHHHHHHHHHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHH--TTCS
T ss_pred CceEEEecCCC-----CcccchHHHHHHHhcCceEEEeCCcccCCCHHHHHHHHHHHHHcCCcceeccCHHHHh--ccCc
Confidence 45789988852 1379999999999999999999976544444444434444445565554444333332 3678
Q ss_pred EEEEc
Q 012132 153 LIVLN 157 (470)
Q Consensus 153 iV~~~ 157 (470)
+|+.-
T Consensus 253 vvyt~ 257 (358)
T 4h31_A 253 FLYTD 257 (358)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 88864
No 243
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=56.45 E-value=47 Score=30.43 Aligned_cols=80 Identities=6% Similarity=0.006 Sum_probs=44.1
Q ss_pred ccccccEEEEEeeccCCCchhHHHHHHHHHHH-h-CCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHh
Q 012132 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLR-G-VGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINT 147 (470)
Q Consensus 70 ~~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~-~-~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (470)
..|+++||++|.. | ......++.|. + .|.++..++...... ........++..........+..
T Consensus 19 ~~m~~~rvgiIG~-----G--~~g~~~~~~l~~~~~~~~lvav~d~~~~~-------~~~~a~~~g~~~~~~~~~~~ll~ 84 (357)
T 3ec7_A 19 FQGMTLKAGIVGI-----G--MIGSDHLRRLANTVSGVEVVAVCDIVAGR-------AQAALDKYAIEAKDYNDYHDLIN 84 (357)
T ss_dssp ---CCEEEEEECC-----S--HHHHHHHHHHHHTCTTEEEEEEECSSTTH-------HHHHHHHHTCCCEEESSHHHHHH
T ss_pred cCCCeeeEEEECC-----c--HHHHHHHHHHHhhCCCcEEEEEEeCCHHH-------HHHHHHHhCCCCeeeCCHHHHhc
Confidence 4577889999985 2 22334566666 3 477777666433321 11222233422223345566666
Q ss_pred hcCCcEEEEcccchhh
Q 012132 148 ALKADLIVLNTAVAGK 163 (470)
Q Consensus 148 ~~~~DiV~~~~~~~~~ 163 (470)
..++|+|++.++....
T Consensus 85 ~~~~D~V~i~tp~~~h 100 (357)
T 3ec7_A 85 DKDVEVVIITASNEAH 100 (357)
T ss_dssp CTTCCEEEECSCGGGH
T ss_pred CCCCCEEEEcCCcHHH
Confidence 6789999998876543
No 244
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=56.40 E-value=25 Score=26.43 Aligned_cols=109 Identities=14% Similarity=0.132 Sum_probs=64.7
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcC-CCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhc---
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKK-IQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF--- 381 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~-l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~--- 381 (470)
..+++|+.+.. .....++...++.| . .|.......+....+. ..|++++-..- .+.-|..+++.+..
T Consensus 14 ~~~ilivdd~~----~~~~~l~~~L~~~g~~--~v~~~~~~~~a~~~l~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~ 86 (135)
T 3snk_A 14 RKQVALFSSDP----NFKRDVATRLDALAIY--DVRVSETDDFLKGPPADTRPGIVILDLGG-GDLLGKPGIVEARALWA 86 (135)
T ss_dssp CEEEEEECSCH----HHHHHHHHHHHHTSSE--EEEEECGGGGGGCCCTTCCCSEEEEEEET-TGGGGSTTHHHHHGGGT
T ss_pred CcEEEEEcCCH----HHHHHHHHHHhhcCCe--EEEEeccHHHHHHHHhccCCCEEEEeCCC-CCchHHHHHHHHHhhCC
Confidence 45778887752 45677777777765 4 3443333233333332 35777764331 33345555555443
Q ss_pred CCCEEecCC-CC---cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 382 QLPVLGTAA-GG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 382 G~PvI~s~~-~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
.+|+|.... .. ..+.+..|..+++..|-+ .++|..+|..++.
T Consensus 87 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~i~~~~~ 132 (135)
T 3snk_A 87 TVPLIAVSDELTSEQTRVLVRMNASDWLHKPLD--GKELLNAVTFHDT 132 (135)
T ss_dssp TCCEEEEESCCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHTC-
T ss_pred CCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCC--HHHHHHHHHHHhc
Confidence 678875432 22 233445577899999988 9999999988765
No 245
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=56.37 E-value=14 Score=30.47 Aligned_cols=35 Identities=9% Similarity=-0.034 Sum_probs=25.7
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
+.|+|+++. |....-..+++.|.++|++|.+++..
T Consensus 2 ~~~~ilVtG------atG~iG~~l~~~l~~~g~~V~~~~r~ 36 (206)
T 1hdo_A 2 AVKKIAIFG------ATGQTGLTTLAQAVQAGYEVTVLVRD 36 (206)
T ss_dssp CCCEEEEES------TTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEEc------CCcHHHHHHHHHHHHCCCeEEEEEeC
Confidence 347777653 33456778889999999999998753
No 246
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=56.37 E-value=22 Score=33.01 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHhcCCCEEec
Q 012132 325 ESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 388 (470)
Q Consensus 325 ~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s 388 (470)
.+..++.+++++.+. + ..++.++++. .|+++..+- ...-.-.+.+|+..|++|++=
T Consensus 56 ~~~a~~~a~~~~~~~-~-----~~~~~~ll~~~~iD~V~i~tp--~~~h~~~~~~al~~Gk~V~~E 113 (383)
T 3oqb_A 56 AEKVEALAKRFNIAR-W-----TTDLDAALADKNDTMFFDAAT--TQARPGLLTQAINAGKHVYCE 113 (383)
T ss_dssp SHHHHHHHHHTTCCC-E-----ESCHHHHHHCSSCCEEEECSC--SSSSHHHHHHHHTTTCEEEEC
T ss_pred HHHHHHHHHHhCCCc-c-----cCCHHHHhcCCCCCEEEECCC--chHHHHHHHHHHHCCCeEEEc
Confidence 355567778887641 1 2678888876 788887776 444455678999999999974
No 247
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=55.96 E-value=28 Score=29.59 Aligned_cols=73 Identities=18% Similarity=0.137 Sum_probs=44.1
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCC
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (470)
.+.++||++. | .......++.|.+.|.+|+|+.+...+ .+.......++.++....... .....
T Consensus 29 L~gk~VLVVG------g-G~va~~ka~~Ll~~GA~VtVvap~~~~-------~l~~l~~~~~i~~i~~~~~~~--dL~~a 92 (223)
T 3dfz_A 29 LKGRSVLVVG------G-GTIATRRIKGFLQEGAAITVVAPTVSA-------EINEWEAKGQLRVKRKKVGEE--DLLNV 92 (223)
T ss_dssp CTTCCEEEEC------C-SHHHHHHHHHHGGGCCCEEEECSSCCH-------HHHHHHHTTSCEEECSCCCGG--GSSSC
T ss_pred cCCCEEEEEC------C-CHHHHHHHHHHHHCCCEEEEECCCCCH-------HHHHHHHcCCcEEEECCCCHh--HhCCC
Confidence 3567888874 3 367788889999999999999854321 122222333455443222211 22468
Q ss_pred cEEEEcccc
Q 012132 152 DLIVLNTAV 160 (470)
Q Consensus 152 DiV~~~~~~ 160 (470)
|+|++.+..
T Consensus 93 dLVIaAT~d 101 (223)
T 3dfz_A 93 FFIVVATND 101 (223)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999987643
No 248
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=55.95 E-value=11 Score=32.30 Aligned_cols=37 Identities=19% Similarity=0.091 Sum_probs=25.0
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhCC-ceEEEEecC
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG-TKVNWITIQ 113 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G-~~V~v~~~~ 113 (470)
.|++|+|++.. |....-..+++.|.+.| ++|.++...
T Consensus 20 ~~~mk~vlVtG------atG~iG~~l~~~L~~~G~~~V~~~~R~ 57 (236)
T 3qvo_A 20 QGHMKNVLILG------AGGQIARHVINQLADKQTIKQTLFARQ 57 (236)
T ss_dssp --CCEEEEEET------TTSHHHHHHHHHHTTCTTEEEEEEESS
T ss_pred cCcccEEEEEe------CCcHHHHHHHHHHHhCCCceEEEEEcC
Confidence 45555665543 33456678899999999 999998744
No 249
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=55.80 E-value=57 Score=28.12 Aligned_cols=75 Identities=7% Similarity=0.022 Sum_probs=46.8
Q ss_pred EEEEEeC-CCCcChHHHHHHHHHHHhc-CCCCcEEEecccCCHHHHHH-hcCEEEEccCCcccccchHHHHHHhcCCCEE
Q 012132 310 HAVIIGS-DMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLA-AIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (470)
Q Consensus 310 ~l~ivG~-g~~~~~~~~~~l~~~~~~~-~l~~~V~~~g~~~~~~~~~~-~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (470)
++.|+|. | .....+.+.+.+. +.+ -+-.....+++..++. .+|++|--|. .+..--.+..+...|+|+|
T Consensus 2 kV~V~Ga~G-----~mG~~i~~~~~~~~~~e-lva~~d~~~dl~~~~~~~~DvvIDfT~--p~a~~~~~~~a~~~g~~~V 73 (245)
T 1p9l_A 2 RVGVLGAKG-----KVGTTMVRAVAAADDLT-LSAELDAGDPLSLLTDGNTEVVIDFTH--PDVVMGNLEFLIDNGIHAV 73 (245)
T ss_dssp EEEEETTTS-----HHHHHHHHHHHHCTTCE-EEEEECTTCCTHHHHHTTCCEEEECSC--TTTHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCC-----HHHHHHHHHHHhCCCCE-EEEEEccCCCHHHHhccCCcEEEEccC--hHHHHHHHHHHHHcCCCEE
Confidence 5788884 6 5667776666543 221 1112222356666665 7899995555 5555444556789999999
Q ss_pred ecCCCC
Q 012132 387 GTAAGG 392 (470)
Q Consensus 387 ~s~~~g 392 (470)
+...|-
T Consensus 74 igTTG~ 79 (245)
T 1p9l_A 74 VGTTGF 79 (245)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 866554
No 250
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=55.44 E-value=39 Score=29.93 Aligned_cols=79 Identities=10% Similarity=0.136 Sum_probs=40.8
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCC-chhHHHhhhhhhhhcceeeEecCCh--hhHHh-hc
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSE-EDEVIYSLEHKMWDRGVQVISAKGQ--ETINT-AL 149 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~ 149 (470)
+|+|+++.. ....-..+++.|.+.||+|.+++...... ...... ....+...++.++..... ..+.. ..
T Consensus 4 ~~~ilVtGa------tG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~-~~~~l~~~~v~~v~~D~~d~~~l~~~~~ 76 (308)
T 1qyc_A 4 RSRILLIGA------TGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQ-LLESFKASGANIVHGSIDDHASLVEAVK 76 (308)
T ss_dssp CCCEEEEST------TSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHH-HHHHHHTTTCEEECCCTTCHHHHHHHHH
T ss_pred CCEEEEEcC------CcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHH-HHHHHHhCCCEEEEeccCCHHHHHHHHc
Confidence 467776652 22345567888889999999887543321 011111 111223446666543322 11211 23
Q ss_pred CCcEEEEccc
Q 012132 150 KADLIVLNTA 159 (470)
Q Consensus 150 ~~DiV~~~~~ 159 (470)
.+|+|+....
T Consensus 77 ~~d~vi~~a~ 86 (308)
T 1qyc_A 77 NVDVVISTVG 86 (308)
T ss_dssp TCSEEEECCC
T ss_pred CCCEEEECCc
Confidence 6898876543
No 251
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=55.37 E-value=12 Score=33.04 Aligned_cols=36 Identities=25% Similarity=0.228 Sum_probs=25.9
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
|++||||+.. . | ..-..+++.|.++||+|.+++...
T Consensus 1 M~~~~ilVtG---a-G---~iG~~l~~~L~~~g~~V~~~~r~~ 36 (286)
T 3gpi_A 1 MSLSKILIAG---C-G---DLGLELARRLTAQGHEVTGLRRSA 36 (286)
T ss_dssp -CCCCEEEEC---C-S---HHHHHHHHHHHHTTCCEEEEECTT
T ss_pred CCCCcEEEEC---C-C---HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5567888774 1 2 355677888999999999998543
No 252
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=55.34 E-value=46 Score=31.61 Aligned_cols=74 Identities=16% Similarity=-0.011 Sum_probs=46.2
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHH---hcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhc
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVM---QKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF 381 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~---~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~ 381 (470)
++++++-+-+.. .+..++.++ ++|+++.-.+.+..+++.++++ ..|+++..+- ...-.-.+++||..
T Consensus 43 ~~~~lvav~d~~------~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp--~~~h~~~~~~al~a 114 (444)
T 2ixa_A 43 DDVEIVAFADPD------PYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSP--WEWHHEHGVAAMKA 114 (444)
T ss_dssp TTEEEEEEECSC------HHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECCC--GGGHHHHHHHHHHT
T ss_pred CCcEEEEEEeCC------HHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcCC--cHHHHHHHHHHHHC
Confidence 788887666542 233344333 4565422233322347888887 4898888776 44444566789999
Q ss_pred CCCEEec
Q 012132 382 QLPVLGT 388 (470)
Q Consensus 382 G~PvI~s 388 (470)
|++|++-
T Consensus 115 GkhV~~E 121 (444)
T 2ixa_A 115 GKIVGME 121 (444)
T ss_dssp TCEEEEC
T ss_pred CCeEEEe
Confidence 9999975
No 253
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=55.30 E-value=54 Score=29.47 Aligned_cols=36 Identities=17% Similarity=0.062 Sum_probs=25.0
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
++|+||+.. |....-..+++.|.++||+|.++....
T Consensus 4 ~~~~vlVTG------atG~iG~~l~~~L~~~G~~V~~~~r~~ 39 (341)
T 3enk_A 4 TKGTILVTG------GAGYIGSHTAVELLAHGYDVVIADNLV 39 (341)
T ss_dssp SSCEEEEET------TTSHHHHHHHHHHHHTTCEEEEECCCS
T ss_pred CCcEEEEec------CCcHHHHHHHHHHHHCCCcEEEEecCC
Confidence 345666543 334566778999999999999887443
No 254
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=55.28 E-value=60 Score=23.93 Aligned_cols=109 Identities=13% Similarity=0.036 Sum_probs=63.3
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHhc----
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF---- 381 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~---- 381 (470)
..+++|+.+.. .....++...+ .+ -.|.......+....+.. .|++++-..- .+.-|..+++.+..
T Consensus 4 ~~~ilivdd~~----~~~~~l~~~l~-~~--~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~~ 75 (133)
T 3nhm_A 4 KPKVLIVENSW----TMRETLRLLLS-GE--FDCTTAADGASGLQQALAHPPDVLISDVNM-DGMDGYALCGHFRSEPTL 75 (133)
T ss_dssp -CEEEEECSCH----HHHHHHHHHHT-TT--SEEEEESSHHHHHHHHHHSCCSEEEECSSC-SSSCHHHHHHHHHHSTTT
T ss_pred CCEEEEEcCCH----HHHHHHHHHHh-CC--cEEEEECCHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHhCCcc
Confidence 35677777652 34455555554 23 234444433444444433 5777765431 34456677766654
Q ss_pred -CCCEEecCCCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 382 -QLPVLGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 382 -G~PvI~s~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
++|+|...... ..+....|..+++..|-+ .++|.++|..++..
T Consensus 76 ~~~pii~~s~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 76 KHIPVIFVSGYAPRTEGPADQPVPDAYLVKPVK--PPVLIAQLHALLAR 122 (133)
T ss_dssp TTCCEEEEESCCC-----TTSCCCSEEEESSCC--HHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHhHHHHhhcCCceEEeccCC--HHHHHHHHHHHHhh
Confidence 67877543211 233444567789999988 99999999998864
No 255
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=55.05 E-value=22 Score=29.93 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=27.7
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
++|||++-.+.. -+.....++++.|.+.|++|+++...
T Consensus 3 ~~k~IllgvTGa---iaa~k~~~ll~~L~~~g~eV~vv~T~ 40 (209)
T 3zqu_A 3 GPERITLAMTGA---SGAQYGLRLLDCLVQEEREVHFLISK 40 (209)
T ss_dssp SCSEEEEEECSS---SCHHHHHHHHHHHHHTTCEEEEEECH
T ss_pred CCCEEEEEEECH---HHHHHHHHHHHHHHHCCCEEEEEECc
Confidence 346777665411 12467899999999999999998754
No 256
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=54.99 E-value=32 Score=27.73 Aligned_cols=110 Identities=12% Similarity=0.142 Sum_probs=68.0
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHh---cC
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---FQ 382 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma---~G 382 (470)
..+++|+.+.. .....++...+..|. .|.......+..+.+.. .|++++-.. -.+.-|+.+++.+. ..
T Consensus 7 ~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvl~D~~-lp~~~g~~~~~~l~~~~~~ 79 (184)
T 3rqi_A 7 DKNFLVIDDNE----VFAGTLARGLERRGY--AVRQAHNKDEALKLAGAEKFEFITVXLH-LGNDSGLSLIAPLCDLQPD 79 (184)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEECSHHHHHHHHTTSCCSEEEECSE-ETTEESHHHHHHHHHHCTT
T ss_pred CCeEEEEcCCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHhhCCCCEEEEecc-CCCccHHHHHHHHHhcCCC
Confidence 45777877652 356677777777664 34443333344444433 577776433 13445667776654 36
Q ss_pred CCEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 383 LPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 383 ~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
+|||.-. ... ..+.+..|..+++..|-+ .++|..+|..++..
T Consensus 80 ~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~--~~~L~~~i~~~~~~ 125 (184)
T 3rqi_A 80 ARILVLTGYASIATAVQAVKDGADNYLAKPAN--VESILAALQTNASE 125 (184)
T ss_dssp CEEEEEESSCCHHHHHHHHHHTCSEEEESSCC--HHHHHHHTSTTHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHhCHHHheeCCCC--HHHHHHHHHHHHHH
Confidence 7777543 222 234455688899999988 99999999887653
No 257
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=54.83 E-value=97 Score=26.19 Aligned_cols=126 Identities=8% Similarity=0.051 Sum_probs=63.4
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEE
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (470)
.+..+.++-.. ..+++++++++. .+.+....-+ ...+..+|+++..+- .+.....+.++.-.|+||-
T Consensus 53 ~GA~VtVvap~------~~~~l~~l~~~~----~i~~i~~~~~-~~dL~~adLVIaAT~--d~~~N~~I~~~ak~gi~VN 119 (223)
T 3dfz_A 53 EGAAITVVAPT------VSAEINEWEAKG----QLRVKRKKVG-EEDLLNVFFIVVATN--DQAVNKFVKQHIKNDQLVN 119 (223)
T ss_dssp GCCCEEEECSS------CCHHHHHHHHTT----SCEEECSCCC-GGGSSSCSEEEECCC--CTHHHHHHHHHSCTTCEEE
T ss_pred CCCEEEEECCC------CCHHHHHHHHcC----CcEEEECCCC-HhHhCCCCEEEECCC--CHHHHHHHHHHHhCCCEEE
Confidence 34566777653 234566676643 3445432211 244667898887665 4444444555545899999
Q ss_pred ecCCCCc-----ceeeecCceeeeecCCCCChHHHHHHHHHHHh----C-HHHHHHHHHHHHHHHHHHcC
Q 012132 387 GTAAGGT-----TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT----H-VERRLTMGKRGYERVKEIFQ 446 (470)
Q Consensus 387 ~s~~~g~-----~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~----~-~~~~~~~~~~a~~~~~~~fs 446 (470)
+.|.+.. +.++..+.--+-+..+-. .-.++..|.+-++ . -....+.....|+.+++.+.
T Consensus 120 vvD~p~~~~f~~Paiv~rg~l~iaIST~G~-sP~la~~iR~~ie~~lp~~~~~~~~~~~~~R~~vk~~~~ 188 (223)
T 3dfz_A 120 MASSFSDGNIQIPAQFSRGRLSLAISTDGA-SPLLTKRIKEDLSSNYDESYTQYTQFLYECRVLIHRLNV 188 (223)
T ss_dssp C-----CCSEECCEEEEETTEEEEEECTTS-CHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHCCS
T ss_pred EeCCcccCeEEEeeEEEeCCEEEEEECCCC-CcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHCC
Confidence 8887653 455555544444443211 3456655555543 1 12233334445666665443
No 258
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=54.74 E-value=85 Score=29.18 Aligned_cols=70 Identities=11% Similarity=-0.046 Sum_probs=48.0
Q ss_pred CceEEEE-EeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh-------cCEEEEccCCcccccchHHHHH
Q 012132 307 PSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA-------IDVLVQNSQAWGECFGRITIEA 378 (470)
Q Consensus 307 ~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~-------aDv~v~pS~~~~E~~g~~~lEA 378 (470)
+++.++- +-+. ..+..++.++++|++.. ....++.++++. .|+++..+- ...-.-.+.+|
T Consensus 38 ~~~~lva~v~d~------~~~~a~~~a~~~g~~~~----~~~~~~~~ll~~~~~~~~~vD~V~i~tp--~~~H~~~~~~a 105 (398)
T 3dty_A 38 NTFVLVAGAFDI------DPIRGSAFGEQLGVDSE----RCYADYLSMFEQEARRADGIQAVSIATP--NGTHYSITKAA 105 (398)
T ss_dssp GSEEEEEEECCS------SHHHHHHHHHHTTCCGG----GBCSSHHHHHHHHTTCTTCCSEEEEESC--GGGHHHHHHHH
T ss_pred CCeEEEEEEeCC------CHHHHHHHHHHhCCCcc----eeeCCHHHHHhcccccCCCCCEEEECCC--cHHHHHHHHHH
Confidence 6677764 4343 35666778888886421 112678888876 899888776 44444567799
Q ss_pred HhcCCCEEec
Q 012132 379 MAFQLPVLGT 388 (470)
Q Consensus 379 ma~G~PvI~s 388 (470)
+..|++|++=
T Consensus 106 l~aGkhVl~E 115 (398)
T 3dty_A 106 LEAGLHVVCE 115 (398)
T ss_dssp HHTTCEEEEC
T ss_pred HHCCCeEEEe
Confidence 9999999983
No 259
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=54.64 E-value=14 Score=35.57 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=31.7
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhC--CceEEEEecCC
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQK 114 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~--G~~V~v~~~~~ 114 (470)
++++|+++. ++..|.-.-+.+|++.|+++ ||+|++++...
T Consensus 8 ~~~~vv~~p--~p~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~ 49 (463)
T 2acv_A 8 KNSELIFIP--APGIGHLASALEFAKLLTNHDKNLYITVFCIKF 49 (463)
T ss_dssp HCEEEEEEC--CSSTTTHHHHHHHHHHHHHTCTTEEEEEEECCC
T ss_pred CCCEEEEEc--CcccchHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence 346888886 44456678899999999999 99999998554
No 260
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=54.49 E-value=59 Score=23.62 Aligned_cols=109 Identities=12% Similarity=0.063 Sum_probs=64.4
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHh---cCC
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQL 383 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G~ 383 (470)
.+++|+.+.. .....++...+..|. .|.......+....+. ..|++++-..- .+.-|..+++.+. ..+
T Consensus 4 ~~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~ 76 (124)
T 1srr_A 4 EKILIVDDQS----GIRILLNEVFNKEGY--QTFQAANGLQALDIVTKERPDLVLLDMKI-PGMDGIEILKRMKVIDENI 76 (124)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHHHHCCSEEEEESCC-TTCCHHHHHHHHHHHCTTC
T ss_pred ceEEEEeCCH----HHHHHHHHHHHHCCc--EEEEeCCHHHHHHHHhccCCCEEEEecCC-CCCCHHHHHHHHHHhCCCC
Confidence 3667777652 356667777776554 3443333334334433 36888764431 2334555666553 467
Q ss_pred CEEec-CCCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 384 PVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 384 PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
|+|.. ..+. ..+....|..+++..|-+ .++|.+++.+++..
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 77 RVIIMTAYGELDMIQESKELGALTHFAKPFD--IDEIRDAVKKYLPL 121 (124)
T ss_dssp EEEEEESSCCHHHHHHHHHHTCCCEEESSCC--HHHHHHHHHHHSCC
T ss_pred CEEEEEccCchHHHHHHHhcChHhhccCCCC--HHHHHHHHHHHhcc
Confidence 77754 3222 233344577899999988 99999999887653
No 261
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=54.46 E-value=14 Score=30.38 Aligned_cols=38 Identities=11% Similarity=-0.020 Sum_probs=27.0
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
++||++..+.. .+.....++++.|.+.|++|+++....
T Consensus 2 ~k~IllgvTGs---~aa~k~~~l~~~L~~~g~~V~vv~T~~ 39 (181)
T 1g63_A 2 YGKLLICATAS---INVININHYIVELKQHFDEVNILFSPS 39 (181)
T ss_dssp CCCEEEEECSC---GGGGGHHHHHHHHTTTSSCEEEEECGG
T ss_pred CCEEEEEEECH---HHHHHHHHHHHHHHHCCCEEEEEEchh
Confidence 45666665421 124578899999999999999998544
No 262
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=54.43 E-value=70 Score=24.42 Aligned_cols=111 Identities=10% Similarity=0.058 Sum_probs=64.9
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHh-cCCCCcEE-EecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHh--
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQDRVH-FVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA-- 380 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~-~~l~~~V~-~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma-- 380 (470)
...+++|+.+.. .....++...++ .|. .+. ......+....+.. .|++++-..- .+.-|..+++.+.
T Consensus 4 ~~~~ILivdd~~----~~~~~l~~~L~~~~~~--~v~~~~~~~~~a~~~l~~~~~dlii~D~~l-~~~~g~~~~~~l~~~ 76 (153)
T 3cz5_A 4 STARIMLVDDHP----IVREGYRRLIERRPGY--AVVAEAADAGEAYRLYRETTPDIVVMDLTL-PGPGGIEATRHIRQW 76 (153)
T ss_dssp CCEEEEEECSCH----HHHHHHHHHHTTSTTE--EEEEEESSHHHHHHHHHTTCCSEEEECSCC-SSSCHHHHHHHHHHH
T ss_pred cccEEEEECCcH----HHHHHHHHHHhhCCCc--EEEEEeCCHHHHHHHHhcCCCCEEEEecCC-CCCCHHHHHHHHHHh
Confidence 346778887752 355566666654 332 222 22222344444433 5888765431 3334566666554
Q ss_pred -cCCCEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 381 -FQLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 381 -~G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
.++|+|... ... ..+.+..|..|++..|.+ .++|.++|..++..
T Consensus 77 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~L~~~i~~~~~~ 125 (153)
T 3cz5_A 77 DGAARILIFTMHQGSAFALKAFEAGASGYVTKSSD--PAELVQAIEAILAG 125 (153)
T ss_dssp CTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSC--TTHHHHHHHHHTTT
T ss_pred CCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCC--HHHHHHHHHHHHhC
Confidence 367877543 222 233445677899999888 89999999998863
No 263
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=54.37 E-value=59 Score=23.55 Aligned_cols=108 Identities=9% Similarity=0.082 Sum_probs=63.2
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHh--cCCC
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLP 384 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma--~G~P 384 (470)
.+++|+.+.. .....++...+..|. .|.......+....+. ..|++++-..- .+.-|..+++.+. ..+|
T Consensus 4 ~~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~ 76 (123)
T 1xhf_A 4 PHILIVEDEL----VTRNTLKSIFEAEGY--DVFEATDGAEMHQILSEYDINLVIMDINL-PGKNGLLLARELREQANVA 76 (123)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHHHSCCSEEEECSSC-SSSCHHHHHHHHHHHCCCE
T ss_pred ceEEEEeCCH----HHHHHHHHHHhhCCc--EEEEeCCHHHHHHHHhcCCCCEEEEcCCC-CCCCHHHHHHHHHhCCCCc
Confidence 3567777652 356667777766554 3443333334444443 35888764431 2334555665553 4677
Q ss_pred EEec-CCCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 385 VLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 385 vI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
+|.. .... ..+.+..|..+++..|-+ .+++...+..++.
T Consensus 77 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~ 119 (123)
T 1xhf_A 77 LMFLTGRDNEVDKILGLEIGADDYITKPFN--PRELTIRARNLLS 119 (123)
T ss_dssp EEEEESCCSHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHhcCcceEEeCCCC--HHHHHHHHHHHHH
Confidence 7754 3222 223345577899999988 9999999877653
No 264
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=54.37 E-value=16 Score=28.28 Aligned_cols=37 Identities=16% Similarity=-0.010 Sum_probs=21.6
Q ss_pred CcccccccEEEEEeeccCCCchhHHHHHHHHHHHhCC--ceEEEE
Q 012132 68 PLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG--TKVNWI 110 (470)
Q Consensus 68 ~~~~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G--~~V~v~ 110 (470)
......++|||++..+. .....+...|.+.| +.|..+
T Consensus 14 ~~~~~~m~~iLivdd~~------~~~~~l~~~L~~~~~~~~v~~~ 52 (150)
T 4e7p_A 14 LVPRGSHMKVLVAEDQS------MLRDAMCQLLTLQPDVESVLQA 52 (150)
T ss_dssp ------CEEEEEECSCH------HHHHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCCCccEEEEEcCCH------HHHHHHHHHHHhCCCcEEEEEE
Confidence 33445578999998653 45666777888777 444443
No 265
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=54.30 E-value=20 Score=27.20 Aligned_cols=34 Identities=12% Similarity=0.160 Sum_probs=24.2
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
+.+++||++..+. .....+...|.+.|++|..+.
T Consensus 4 ~~~~~iLivdd~~------~~~~~l~~~l~~~g~~v~~~~ 37 (140)
T 3grc_A 4 APRPRILICEDDP------DIARLLNLMLEKGGFDSDMVH 37 (140)
T ss_dssp -CCSEEEEECSCH------HHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCCEEEEcCCH------HHHHHHHHHHHHCCCeEEEEC
Confidence 3457999998643 456677788888999976553
No 266
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=54.16 E-value=16 Score=29.57 Aligned_cols=34 Identities=24% Similarity=0.139 Sum_probs=23.4
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEE
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWI 110 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~ 110 (470)
.|++++||++..+. .....+...|.+.||+|..+
T Consensus 4 ~m~~~~iLivdd~~------~~~~~l~~~L~~~g~~v~~~ 37 (184)
T 3rqi_A 4 SMSDKNFLVIDDNE------VFAGTLARGLERRGYAVRQA 37 (184)
T ss_dssp ---CCEEEEECSCH------HHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCeEEEEcCCH------HHHHHHHHHHHHCCCEEEEe
Confidence 46678999998654 45666777888889988554
No 267
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=54.01 E-value=38 Score=31.46 Aligned_cols=68 Identities=15% Similarity=0.109 Sum_probs=47.9
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHhcCCC
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLP 384 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (470)
++++++-+-+. ..+..++.+++++++ ...++.++++. .|+++..+. .....-.+.+|+..|++
T Consensus 26 ~~~~l~av~d~------~~~~~~~~a~~~g~~-------~~~~~~ell~~~~vD~V~i~tp--~~~H~~~~~~al~aGk~ 90 (387)
T 3moi_A 26 PDAQIVAACDP------NEDVRERFGKEYGIP-------VFATLAEMMQHVQMDAVYIASP--HQFHCEHVVQASEQGLH 90 (387)
T ss_dssp TTEEEEEEECS------CHHHHHHHHHHHTCC-------EESSHHHHHHHSCCSEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCeEEEEEEeC------CHHHHHHHHHHcCCC-------eECCHHHHHcCCCCCEEEEcCC--cHHHHHHHHHHHHCCCc
Confidence 77888766654 245556677777653 12577888876 899998876 44444567789999999
Q ss_pred EEecC
Q 012132 385 VLGTA 389 (470)
Q Consensus 385 vI~s~ 389 (470)
|++-.
T Consensus 91 Vl~EK 95 (387)
T 3moi_A 91 IIVEK 95 (387)
T ss_dssp EEECS
T ss_pred eeeeC
Confidence 99754
No 268
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=53.99 E-value=21 Score=26.61 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=24.9
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEE
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWI 110 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~ 110 (470)
+++++|+++.... .....+...|.+.|++|...
T Consensus 5 ~~~~~ilivdd~~------~~~~~l~~~L~~~g~~v~~~ 37 (130)
T 3eod_A 5 LVGKQILIVEDEQ------VFRSLLDSWFSSLGATTVLA 37 (130)
T ss_dssp TTTCEEEEECSCH------HHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCeEEEEeCCH------HHHHHHHHHHHhCCceEEEe
Confidence 4568999998643 45667778888899998764
No 269
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=53.76 E-value=14 Score=29.00 Aligned_cols=77 Identities=14% Similarity=0.176 Sum_probs=43.6
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCCh--hhHHh--
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ--ETINT-- 147 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-- 147 (470)
|.+++|+++. +.+.-..+++.|.+.|++|+++...... ....+.. ....++.++..... ..+..
T Consensus 1 ~~~~~vlI~G-------~G~vG~~la~~L~~~g~~V~vid~~~~~----~~~~~~~-~~~~~~~~i~gd~~~~~~l~~a~ 68 (153)
T 1id1_A 1 HRKDHFIVCG-------HSILAINTILQLNQRGQNVTVISNLPED----DIKQLEQ-RLGDNADVIPGDSNDSSVLKKAG 68 (153)
T ss_dssp CCCSCEEEEC-------CSHHHHHHHHHHHHTTCCEEEEECCCHH----HHHHHHH-HHCTTCEEEESCTTSHHHHHHHT
T ss_pred CCCCcEEEEC-------CCHHHHHHHHHHHHCCCCEEEEECCChH----HHHHHHH-hhcCCCeEEEcCCCCHHHHHHcC
Confidence 4456777774 2367788999999999999999753211 0001111 11235555543322 22221
Q ss_pred hcCCcEEEEcccc
Q 012132 148 ALKADLIVLNTAV 160 (470)
Q Consensus 148 ~~~~DiV~~~~~~ 160 (470)
..+.|+|++.+..
T Consensus 69 i~~ad~vi~~~~~ 81 (153)
T 1id1_A 69 IDRCRAILALSDN 81 (153)
T ss_dssp TTTCSEEEECSSC
T ss_pred hhhCCEEEEecCC
Confidence 3578988887643
No 270
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=53.74 E-value=1.1e+02 Score=26.26 Aligned_cols=109 Identities=13% Similarity=0.189 Sum_probs=63.0
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHH---hcC
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAM---AFQ 382 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAm---a~G 382 (470)
..+++|+.+.. .....+....++.|. .|.......+..+.+.. .|++++--.- .+.-|..+++.+ ...
T Consensus 129 ~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~a~~~~eal~~l~~~~~dlvl~D~~m-p~~~G~~l~~~ir~~~~~ 201 (254)
T 2ayx_A 129 DMMILVVDDHP----INRRLLADQLGSLGY--QCKTANDGVDALNVLSKNHIDIVLSDVNM-PNMDGYRLTQRIRQLGLT 201 (254)
T ss_dssp CCEEEEEESSH----HHHHHHHHHHHHHTS--EEEEECCSHHHHHHHHHSCCSEEEEEESS-CSSCCHHHHHHHHHHHCC
T ss_pred CCEEEEEeCCH----HHHHHHHHHHHHcCC--EEEEECCHHHHHHHHHhCCCCEEEEcCCC-CCCCHHHHHHHHHhcCCC
Confidence 45666666642 345556666666554 34444433333444433 5777753320 233455565554 347
Q ss_pred CCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 383 LPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 383 ~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
+|||+..... ..+.+..|..+++..|-+ .++|.++|..++.
T Consensus 202 ~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~--~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 202 LPVIGVTANALAEEKQRCLESGMDSCLSKPVT--LDVIKQTLTLYAE 246 (254)
T ss_dssp SCEEEEESSTTSHHHHHHHHCCCEEEEESSCC--HHHHHHHHHHHHH
T ss_pred CcEEEEECCCCHHHHHHHHHcCCceEEECCCC--HHHHHHHHHHHHH
Confidence 8888643222 233344577899999988 9999999988864
No 271
>1jl3_A Arsenate reductase; alpha-beta fold, PTP-loop, oxidoreductase; 1.60A {Bacillus subtilis} SCOP: c.44.1.1 PDB: 1z2d_A 1z2e_A 2ipa_B
Probab=53.71 E-value=56 Score=25.18 Aligned_cols=81 Identities=14% Similarity=0.086 Sum_probs=41.0
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEe--cCChhhHHhhc
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS--AKGQETINTAL 149 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 149 (470)
|++++||||+..- ..-+..+..+.+.+.. ..+.+.+..-... .........+.+.|+.+-. .+..... ...
T Consensus 1 M~~~~VLFVC~gN--~cRSpmAEai~~~~~~--~~~~v~SAGt~~~--~~~p~a~~~l~~~Gid~s~~~sr~l~~~-~~~ 73 (139)
T 1jl3_A 1 MENKIIYFLCTGN--SCRSQMAEGWAKQYLG--DEWKVYSAGIEAH--GLNPNAVKAMKEVGIDISNQTSDIIDSD-ILN 73 (139)
T ss_dssp --CEEEEEEESSS--SSHHHHHHHHHHHHSC--TTEEEEEEESSCC--CCCHHHHHHHHHTTCCCTTCCCCBCCHH-HHT
T ss_pred CCCCeEEEEcCCc--hHHHHHHHHHHHHhCC--CCEEEEcCcCCCC--CCCHHHHHHHHHcCCCcccCccCcCCHH-Hhh
Confidence 3456899999642 1123455556666543 3455555221111 1122234556677887632 2222222 235
Q ss_pred CCcEEEEccc
Q 012132 150 KADLIVLNTA 159 (470)
Q Consensus 150 ~~DiV~~~~~ 159 (470)
.+|+|++-+.
T Consensus 74 ~~D~Ii~m~~ 83 (139)
T 1jl3_A 74 NADLVVTLCG 83 (139)
T ss_dssp TCSEEEECSH
T ss_pred cCCEEEEeCc
Confidence 7999999854
No 272
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=53.56 E-value=45 Score=30.59 Aligned_cols=79 Identities=5% Similarity=0.007 Sum_probs=48.6
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
..++|+++... ..+++..++.++...|.+|.++++..-.+...............|..+......... ....|
T Consensus 175 ~gl~va~vGD~-----~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~ea--v~~aD 247 (359)
T 2w37_A 175 QGLTLTFMGDG-----RNNVANSLLVTGAILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEG--LKGSN 247 (359)
T ss_dssp TTCEEEEESCT-----TSHHHHHHHHHHHHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHH--HTTCS
T ss_pred CCeEEEEECCC-----ccchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHH--hcCCC
Confidence 45789998762 148999999999999999999997654443333222222333445444333333222 24688
Q ss_pred EEEEcc
Q 012132 153 LIVLNT 158 (470)
Q Consensus 153 iV~~~~ 158 (470)
+|+.-.
T Consensus 248 vvytd~ 253 (359)
T 2w37_A 248 VVYTDV 253 (359)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 888853
No 273
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=53.54 E-value=8.4 Score=35.33 Aligned_cols=39 Identities=18% Similarity=0.062 Sum_probs=27.7
Q ss_pred ccccEEEEEeeccCCCchh-----HHHHHHHHHHHhCCceEEEEecC
Q 012132 72 MKSKLVLLVSHELSLSGGP-----LLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~-----~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|++|||+++....+ .| ....+++++|.+.||+|..+...
T Consensus 1 m~~~~v~vl~gG~s---~E~~vs~~s~~~v~~al~~~g~~v~~i~~~ 44 (343)
T 1e4e_A 1 MNRIKVAILFGGCS---EEHDVSVKSAIEIAANINKEKYEPLYIGIT 44 (343)
T ss_dssp -CCEEEEEEEECSS---TTHHHHHHHHHHHHHHSCTTTEEEEEEEEC
T ss_pred CCCcEEEEEeCCCC---CCcchhHHHHHHHHHHhhhcCCEEEEEEEc
Confidence 56789999984221 12 24677899999999999988643
No 274
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=53.45 E-value=26 Score=32.49 Aligned_cols=68 Identities=12% Similarity=0.081 Sum_probs=47.6
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHhcCCCE
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPV 385 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~Pv 385 (470)
+.+++-+.+. ..+..++.+++++.+. + ..++.++++. .|+++..+- ...-.-.+++|+..|++|
T Consensus 37 ~~~l~av~d~------~~~~a~~~a~~~g~~~-~-----~~d~~~ll~~~~iDaV~I~tP--~~~H~~~~~~al~aGkhV 102 (390)
T 4h3v_A 37 HPDLNVLCGR------DAEAVRAAAGKLGWST-T-----ETDWRTLLERDDVQLVDVCTP--GDSHAEIAIAALEAGKHV 102 (390)
T ss_dssp EEEEEEEECS------SHHHHHHHHHHHTCSE-E-----ESCHHHHTTCTTCSEEEECSC--GGGHHHHHHHHHHTTCEE
T ss_pred CceEEEEEcC------CHHHHHHHHHHcCCCc-c-----cCCHHHHhcCCCCCEEEEeCC--hHHHHHHHHHHHHcCCCc
Confidence 4567766664 4567788888887641 1 1567777754 788888776 444455678899999999
Q ss_pred EecC
Q 012132 386 LGTA 389 (470)
Q Consensus 386 I~s~ 389 (470)
++=.
T Consensus 103 l~EK 106 (390)
T 4h3v_A 103 LCEK 106 (390)
T ss_dssp EEES
T ss_pred eeec
Confidence 9753
No 275
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=53.30 E-value=97 Score=25.73 Aligned_cols=109 Identities=13% Similarity=0.070 Sum_probs=67.8
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHh---cC
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQ 382 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G 382 (470)
..+++|+.+.. .....+....+..|. .|.......+....+. ..|++++-..- .+.-|+.+++.+. .+
T Consensus 7 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~~dlvllD~~l-~~~~g~~~~~~l~~~~~~ 79 (233)
T 1ys7_A 7 SPRVLVVDDDS----DVLASLERGLRLSGF--EVATAVDGAEALRSATENRPDAIVLDINM-PVLDGVSVVTALRAMDND 79 (233)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEEESSC-SSSCHHHHHHHHHHTTCC
T ss_pred CCeEEEEeCCH----HHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCC
Confidence 45778887752 356677777776654 3443333334444443 35887764431 3344666776664 46
Q ss_pred CCEEecC-CC---CcceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 383 LPVLGTA-AG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 383 ~PvI~s~-~~---g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
+|||... .. ...+.+..|..|++..|.+ .++|..+|..++.
T Consensus 80 ~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~L~~~i~~~~~ 124 (233)
T 1ys7_A 80 VPVCVLSARSSVDDRVAGLEAGADDYLVKPFV--LAELVARVKALLR 124 (233)
T ss_dssp CCEEEEECCCTTTCCCTTTTTTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHh
Confidence 8887542 22 2344455677899999988 9999999998865
No 276
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=53.16 E-value=8.7 Score=28.93 Aligned_cols=40 Identities=13% Similarity=0.005 Sum_probs=29.4
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCC--ceEEEEecCC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVG--TKVNWITIQK 114 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G--~~V~v~~~~~ 114 (470)
||++|+.....+.....+...+|....++| ++|.|+....
T Consensus 8 ~K~~ivi~s~d~~~~~~~al~~A~~a~~~G~~~eV~i~~~G~ 49 (117)
T 2fb6_A 8 DKLTILWTTDNKDTVFNMLAMYALNSKNRGWWKHINIILWGA 49 (117)
T ss_dssp SEEEEEECCCCHHHHHHTHHHHHHHHHHHTSCSEEEEEECSH
T ss_pred CeEEEEEEcCChHHHHHHHHHHHHHHHHcCCCCcEEEEEECC
Confidence 788888876433322356888999999999 7999998543
No 277
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=53.06 E-value=44 Score=30.21 Aligned_cols=77 Identities=9% Similarity=0.098 Sum_probs=47.4
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
..+||+++... .+++..++..+...|.+|+++++..-.................|..+.......... ...|
T Consensus 154 ~gl~va~vGD~------~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav--~~aD 225 (321)
T 1oth_A 154 KGLTLSWIGDG------NNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAA--HGGN 225 (321)
T ss_dssp TTCEEEEESCS------SHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHH--TTCS
T ss_pred CCcEEEEECCc------hhhHHHHHHHHHHcCCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHh--ccCC
Confidence 45789998762 378999999999999999999976544333333222222233444433333332222 4678
Q ss_pred EEEEc
Q 012132 153 LIVLN 157 (470)
Q Consensus 153 iV~~~ 157 (470)
+|+.-
T Consensus 226 vvy~d 230 (321)
T 1oth_A 226 VLITD 230 (321)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 88884
No 278
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=53.01 E-value=46 Score=30.65 Aligned_cols=78 Identities=13% Similarity=0.028 Sum_probs=48.1
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCC--chhHHHhhhhhhhhcceeeEecCChhhHHhhcC
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSE--EDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (470)
..+||+++.... .+++..++..+...|.+|.++++..-.+ ...............|..+......... ...
T Consensus 179 ~glkva~vGD~~-----nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea--v~~ 251 (365)
T 4amu_A 179 KNKKIVFIGDYK-----NNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILA--AQD 251 (365)
T ss_dssp TTCEEEEESSTT-----SHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHHHH--TTT
T ss_pred CCCEEEEECCCC-----cchHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHHHH--hcC
Confidence 568999987531 2578999999999999999998654333 2233322233334455544333333222 246
Q ss_pred CcEEEEc
Q 012132 151 ADLIVLN 157 (470)
Q Consensus 151 ~DiV~~~ 157 (470)
.|+|+.-
T Consensus 252 aDVVytd 258 (365)
T 4amu_A 252 ADVIYTD 258 (365)
T ss_dssp CSEEEEC
T ss_pred CCEEEec
Confidence 8999984
No 279
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=53.00 E-value=40 Score=25.82 Aligned_cols=33 Identities=21% Similarity=0.157 Sum_probs=22.6
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
+.+|||+|-.+. ....-+...|.+.|++++..+
T Consensus 11 k~~rILiVDD~~------~~r~~l~~~L~~~G~~~v~~a 43 (134)
T 3to5_A 11 KNMKILIVDDFS------TMRRIVKNLLRDLGFNNTQEA 43 (134)
T ss_dssp TTCCEEEECSCH------HHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCEEEEEeCCH------HHHHHHHHHHHHcCCcEEEEE
Confidence 457999998643 345566777888999754433
No 280
>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*
Probab=52.97 E-value=77 Score=29.12 Aligned_cols=83 Identities=8% Similarity=0.037 Sum_probs=47.3
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCC-CchhHHHhhhhhhhhcceeeEecCChhhHHhhcCC
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS-EEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (470)
+.+||.++.....-....+++..++..+...|.+|.++++.+.. ................|..+.......... ...
T Consensus 189 ~g~kv~~~~~~~gd~~~~~Va~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav--~~a 266 (359)
T 3kzn_A 189 RGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHDIDSAY--AGA 266 (359)
T ss_dssp TTCEEEEEECCCSSCCCSHHHHHHHHHHHHTTCEEEEECSSGGGCCCHHHHHHHHHHHHHHSCEEEEECCHHHHH--TTC
T ss_pred cCCeEEEEEeecCCccccchhhhhHHHHHhccccEEEEecccccCCCHHHHHHHHHHHHhhCCCcccccCHHHHh--cCC
Confidence 45677776654322223589999999999999999999975322 222222222233334454443333333222 357
Q ss_pred cEEEEc
Q 012132 152 DLIVLN 157 (470)
Q Consensus 152 DiV~~~ 157 (470)
|+|+..
T Consensus 267 Dvvyt~ 272 (359)
T 3kzn_A 267 DVVYAK 272 (359)
T ss_dssp SEEEEE
T ss_pred eEEEEE
Confidence 888764
No 281
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=52.94 E-value=39 Score=24.63 Aligned_cols=31 Identities=32% Similarity=0.349 Sum_probs=22.4
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEE
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWI 110 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~ 110 (470)
.++|+++..+. .....+...|.+.|++|...
T Consensus 2 ~~~ilivdd~~------~~~~~l~~~L~~~g~~v~~~ 32 (120)
T 3f6p_A 2 DKKILVVDDEK------PIADILEFNLRKEGYEVHCA 32 (120)
T ss_dssp CCEEEEECSCH------HHHHHHHHHHHHTTCEEEEE
T ss_pred CCeEEEEECCH------HHHHHHHHHHHhCCEEEEEe
Confidence 46899888643 45566777888889998754
No 282
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=52.92 E-value=55 Score=24.13 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=23.1
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
.+++|+++.... .....+...|.+.|++|....
T Consensus 5 ~~~~ilivdd~~------~~~~~l~~~L~~~g~~v~~~~ 37 (132)
T 3lte_A 5 QSKRILVVDDDQ------AMAAAIERVLKRDHWQVEIAH 37 (132)
T ss_dssp --CEEEEECSCH------HHHHHHHHHHHHTTCEEEEES
T ss_pred CCccEEEEECCH------HHHHHHHHHHHHCCcEEEEeC
Confidence 357899998643 456667788888999887553
No 283
>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP: c.44.1.1 PDB: 1d2a_A* 1d1p_A*
Probab=52.87 E-value=59 Score=25.84 Aligned_cols=86 Identities=8% Similarity=-0.129 Sum_probs=43.6
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHH-hCCce---EEEEecCCCC--CchhHHHhhhhhhhhcceeeE-ecCChh
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLR-GVGTK---VNWITIQKPS--EEDEVIYSLEHKMWDRGVQVI-SAKGQE 143 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~-~~G~~---V~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 143 (470)
.|+++|||||+..-. .-+..+..+.+.+. +.|.+ +.+.+..-.. ............+.+.|+.+- ..+...
T Consensus 4 ~~~~~~VLFVCtgN~--cRSpmAEal~~~~~~~~gl~~~~~~v~SAGt~~~~~g~~~~p~a~~~l~~~Gid~s~~ar~l~ 81 (161)
T 1d1q_A 4 EKPKISVAFIALGNF--CRSPMAEAIFKHEVEKANLENRFNKIDSFGTSNYHVGESPDHRTVSICKQHGVKINHKGKQIK 81 (161)
T ss_dssp CSCCEEEEEEESSSS--SHHHHHHHHHHHHHHHTTCGGGEEEEEEEESSCTTBTCCCCHHHHHHHHHTTCCCCCCBCBCC
T ss_pred CCCCCEEEEEcCCcH--HHHHHHHHHHHHHHHHcCCCCCeEEEEeccccCCcCCCCCCHHHHHHHHHcCcCCCceEeECC
Confidence 456789999996421 11344555555554 34543 6666622111 011111123445666777764 222221
Q ss_pred hHHhhcCCcEEEEccc
Q 012132 144 TINTALKADLIVLNTA 159 (470)
Q Consensus 144 ~~~~~~~~DiV~~~~~ 159 (470)
.. ....+|+|++-+.
T Consensus 82 ~~-~~~~~DlIl~M~~ 96 (161)
T 1d1q_A 82 TK-HFDEYDYIIGMDE 96 (161)
T ss_dssp GG-GGGTCSEEEESSH
T ss_pred HH-HHhhCCEEEEeCH
Confidence 11 2357999999864
No 284
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=52.80 E-value=21 Score=27.00 Aligned_cols=33 Identities=30% Similarity=0.451 Sum_probs=23.6
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEE
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWI 110 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~ 110 (470)
|++++||++..+. .....+...|.+.|++|...
T Consensus 2 m~~~~iLivdd~~------~~~~~l~~~L~~~g~~v~~~ 34 (136)
T 3t6k_A 2 MKPHTLLIVDDDD------TVAEMLELVLRGAGYEVRRA 34 (136)
T ss_dssp -CCCEEEEECSCH------HHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEEeCCH------HHHHHHHHHHHHCCCEEEEe
Confidence 5567899998653 45666777888889988654
No 285
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=52.80 E-value=45 Score=24.74 Aligned_cols=32 Identities=13% Similarity=0.048 Sum_probs=23.0
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
++||+++.... .....+...|.+.|++|...+
T Consensus 1 ~~~ilivdd~~------~~~~~l~~~L~~~g~~v~~~~ 32 (134)
T 3f6c_A 1 SLNAIIIDDHP------LAIAAIRNLLIKNDIEILAEL 32 (134)
T ss_dssp CEEEEEECCCH------HHHHHHHHHHHHTTEEEEEEE
T ss_pred CeEEEEEcCCH------HHHHHHHHHHhhCCcEEEEEc
Confidence 36888888643 456677888888898886444
No 286
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=52.75 E-value=24 Score=27.25 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=25.7
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
..++++||++.... .....+...|.+.|++|..+.
T Consensus 11 ~~~~~~ILivdd~~------~~~~~l~~~L~~~g~~v~~~~ 45 (153)
T 3hv2_A 11 VTRRPEILLVDSQE------VILQRLQQLLSPLPYTLHFAR 45 (153)
T ss_dssp CCSCCEEEEECSCH------HHHHHHHHHHTTSSCEEEEES
T ss_pred ccCCceEEEECCCH------HHHHHHHHHhcccCcEEEEEC
Confidence 34567999998653 466777888888899887553
No 287
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=52.68 E-value=21 Score=29.28 Aligned_cols=37 Identities=8% Similarity=0.026 Sum_probs=28.7
Q ss_pred cEEEEEeeccCCCch-hHHHHHHHHHHHhC------CceEEEEe
Q 012132 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGV------GTKVNWIT 111 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~------G~~V~v~~ 111 (470)
|||+++..+...+|. ...+..+++.+.+. |++|.++-
T Consensus 1 Mkilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~d 44 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVD 44 (191)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEEC
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEe
Confidence 689999876655554 57777888888876 79999886
No 288
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=52.57 E-value=80 Score=26.47 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=43.7
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCC--ceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC----------
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG---------- 141 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 141 (470)
||||+++.+ |...-+..|..+.++.. .+|..+..+.+.. .........|++++....
T Consensus 2 m~riavl~S-----g~Gsnl~ali~~~~~~~l~~eI~~Visn~~~a------~v~~~A~~~gIp~~~~~~~~~~~r~~~d 70 (211)
T 3p9x_A 2 MKRVAIFAS-----GSGTNAEAIIQSQKAGQLPCEVALLITDKPGA------KVVERVKVHEIPVCALDPKTYPSKEAYE 70 (211)
T ss_dssp -CEEEEECC-----TTCHHHHHHHHHHHTTCCSSEEEEEEESCSSS------HHHHHHHTTTCCEEECCGGGSSSHHHHH
T ss_pred CCEEEEEEe-----CCchHHHHHHHHHHcCCCCcEEEEEEECCCCc------HHHHHHHHcCCCEEEeChhhcCchhhhH
Confidence 478888875 33356777777765432 4776655543321 123455667888764321
Q ss_pred --hhhHHhhcCCcEEEEcc
Q 012132 142 --QETINTALKADLIVLNT 158 (470)
Q Consensus 142 --~~~~~~~~~~DiV~~~~ 158 (470)
.....+..+||+|++-.
T Consensus 71 ~~~~~~l~~~~~Dliv~ag 89 (211)
T 3p9x_A 71 IEVVQQLKEKQIDFVVLAG 89 (211)
T ss_dssp HHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHhcCCCEEEEeC
Confidence 12345678999999865
No 289
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=52.54 E-value=19 Score=33.20 Aligned_cols=70 Identities=13% Similarity=0.004 Sum_probs=45.2
Q ss_pred CCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhc--CEEEEccCCcccccchHHHHHHhcCC
Q 012132 306 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI--DVLVQNSQAWGECFGRITIEAMAFQL 383 (470)
Q Consensus 306 ~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~a--Dv~v~pS~~~~E~~g~~~lEAma~G~ 383 (470)
.+++.++-+-+. ..+..++.+++++.. . ...++.++++.. |+++..+. ...-.-.+.+|+..|+
T Consensus 28 ~~~~~l~av~d~------~~~~~~~~a~~~~~~---~---~~~~~~~ll~~~~vD~V~i~tp--~~~H~~~~~~al~aGk 93 (359)
T 3m2t_A 28 MQDIRIVAACDS------DLERARRVHRFISDI---P---VLDNVPAMLNQVPLDAVVMAGP--PQLHFEMGLLAMSKGV 93 (359)
T ss_dssp CTTEEEEEEECS------SHHHHGGGGGTSCSC---C---EESSHHHHHHHSCCSEEEECSC--HHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEEEcC------CHHHHHHHHHhcCCC---c---ccCCHHHHhcCCCCCEEEEcCC--cHHHHHHHHHHHHCCC
Confidence 378888755543 234455555554321 1 126788888865 88888776 4444556778999999
Q ss_pred CEEecC
Q 012132 384 PVLGTA 389 (470)
Q Consensus 384 PvI~s~ 389 (470)
+|++-.
T Consensus 94 hVl~EK 99 (359)
T 3m2t_A 94 NVFVEK 99 (359)
T ss_dssp EEEECS
T ss_pred eEEEEC
Confidence 999753
No 290
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=52.51 E-value=19 Score=30.05 Aligned_cols=41 Identities=15% Similarity=-0.021 Sum_probs=29.4
Q ss_pred ccccEEEEEeeccCCCchhH-HHHHHHHHHHhCCceEEEEecCCC
Q 012132 72 MKSKLVLLVSHELSLSGGPL-LLMELAFLLRGVGTKVNWITIQKP 115 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~-~~~~l~~~L~~~G~~V~v~~~~~~ 115 (470)
++++||++-.+.. ++.. ...++++.|.+.|++|+++.....
T Consensus 5 l~~k~I~lgiTGs---~aa~~k~~~ll~~L~~~g~eV~vv~T~~A 46 (201)
T 3lqk_A 5 FAGKHVGFGLTGS---HCTYHEVLPQMERLVELGAKVTPFVTHTV 46 (201)
T ss_dssp CTTCEEEEECCSC---GGGGGGTHHHHHHHHHTTCEEEEECSSCS
T ss_pred cCCCEEEEEEECh---HHHHHHHHHHHHHHhhCCCEEEEEEChhH
Confidence 3457887766421 2234 689999999999999999986544
No 291
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=52.48 E-value=1.2e+02 Score=26.35 Aligned_cols=213 Identities=11% Similarity=0.015 Sum_probs=97.6
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
+..+|.++.+.....--......+-+++.+.|+++.++........ .... .......++|
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~---~~~~-----------------~~~l~~~~vd 66 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAEDIVR---EREA-----------------VGQFFERRVD 66 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHH---HHHH-----------------HHHHHHTTCS
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHH---HHHH-----------------HHHHHHCCCC
Confidence 4568999987643211235666777788889999998875432110 0000 1112345788
Q ss_pred EEEEcccch-hhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCc
Q 012132 153 LIVLNTAVA-GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPD 231 (470)
Q Consensus 153 iV~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 231 (470)
-|++..... ...+..+... ..|++..-..... .....+..+.........+.+.+. | ..+
T Consensus 67 giIi~~~~~~~~~~~~~~~~-----~iPvV~~~~~~~~-----------~~~~~V~~D~~~~g~~a~~~L~~~-G--~~~ 127 (291)
T 3egc_A 67 GLILAPSEGEHDYLRTELPK-----TFPIVAVNRELRI-----------PGCGAVLSENVRGARTAVEYLIAR-G--HTR 127 (291)
T ss_dssp EEEECCCSSCCHHHHHSSCT-----TSCEEEESSCCCC-----------TTCEEEEECHHHHHHHHHHHHHHT-T--CCS
T ss_pred EEEEeCCCCChHHHHHhhcc-----CCCEEEEecccCC-----------CCCCEEEECcHHHHHHHHHHHHHc-C--CCE
Confidence 888765432 2222222222 2345443222110 112223333333333333333322 3 456
Q ss_pred eEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEE
Q 012132 232 TYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHA 311 (470)
Q Consensus 232 i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l 311 (470)
+.++....+....... ....++.+ ++.|++.+...+ ..+......+...+.+.+. +.++...
T Consensus 128 i~~i~~~~~~~~~~~R-----~~gf~~~l-~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~l~-----------~~~~~~a 189 (291)
T 3egc_A 128 IGAIVGSAGLMTSRER-----LKGFRAAM-SAAGLPVRQEWI-AAGGVRADNGRDGAIKVLT-----------GADRPTA 189 (291)
T ss_dssp EEEECSCTTSHHHHHH-----HHHHHHHH-HHTTCCCCGGGE-EC------CCHHHHHHHHT-----------C-CCCSE
T ss_pred EEEEeCCCCCcCHHHH-----HHHHHHHH-HHcCCCCCHHHe-EeCCCChhHHHHHHHHHHh-----------CCCCCcE
Confidence 7776544322211110 01112223 334655433222 2355556666655444332 2356666
Q ss_pred EEEeCCCCcChHHHHHHHHHHHhcCCC--CcEEEeccc
Q 012132 312 VIIGSDMNAQTKFESELRNYVMQKKIQ--DRVHFVNKT 347 (470)
Q Consensus 312 ~ivG~g~~~~~~~~~~l~~~~~~~~l~--~~V~~~g~~ 347 (470)
+++.++ .....+-+.+++.|+. +.|.+.|+.
T Consensus 190 i~~~~d-----~~a~g~~~al~~~g~~vP~di~vvg~d 222 (291)
T 3egc_A 190 LLTSSH-----RITEGAMQALNVLGLRYGPDVEIVSFD 222 (291)
T ss_dssp EEESSH-----HHHHHHHHHHHHHTCCBTTTBEEEEES
T ss_pred EEECCc-----HHHHHHHHHHHHcCCCCCCceEEEEec
Confidence 777664 3444455666677764 789999975
No 292
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=52.40 E-value=35 Score=26.21 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=44.2
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCCh--hhHH--hhc
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ--ETIN--TAL 149 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~ 149 (470)
+++|+++.. .+.-..+++.|.+.|++|+++...... .+.+...|+.++..... ..+. ...
T Consensus 7 ~~~viIiG~-------G~~G~~la~~L~~~g~~v~vid~~~~~---------~~~~~~~g~~~i~gd~~~~~~l~~a~i~ 70 (140)
T 3fwz_A 7 CNHALLVGY-------GRVGSLLGEKLLASDIPLVVIETSRTR---------VDELRERGVRAVLGNAANEEIMQLAHLE 70 (140)
T ss_dssp CSCEEEECC-------SHHHHHHHHHHHHTTCCEEEEESCHHH---------HHHHHHTTCEEEESCTTSHHHHHHTTGG
T ss_pred CCCEEEECc-------CHHHHHHHHHHHHCCCCEEEEECCHHH---------HHHHHHcCCCEEECCCCCHHHHHhcCcc
Confidence 457777752 367888999999999999999754221 22333456666543322 1222 235
Q ss_pred CCcEEEEcccc
Q 012132 150 KADLIVLNTAV 160 (470)
Q Consensus 150 ~~DiV~~~~~~ 160 (470)
+.|+|++..+.
T Consensus 71 ~ad~vi~~~~~ 81 (140)
T 3fwz_A 71 CAKWLILTIPN 81 (140)
T ss_dssp GCSEEEECCSC
T ss_pred cCCEEEEECCC
Confidence 78998876654
No 293
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=52.29 E-value=45 Score=30.08 Aligned_cols=67 Identities=10% Similarity=0.076 Sum_probs=47.7
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhcCCC
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (470)
++++++-+-+. ..+..++++++++.. ..++.++++ ..|+++..+. .....-.+.+|+..|++
T Consensus 26 ~~~~l~av~d~------~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~D~V~i~tp--~~~h~~~~~~al~~gk~ 89 (331)
T 4hkt_A 26 ADARLVAVADA------FPAAAEAIAGAYGCE--------VRTIDAIEAAADIDAVVICTP--TDTHADLIERFARAGKA 89 (331)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHHTTCE--------ECCHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEECC------CHHHHHHHHHHhCCC--------cCCHHHHhcCCCCCEEEEeCC--chhHHHHHHHHHHcCCc
Confidence 78888755553 345567777777642 267788887 7899998776 44445567789999999
Q ss_pred EEecC
Q 012132 385 VLGTA 389 (470)
Q Consensus 385 vI~s~ 389 (470)
|++-.
T Consensus 90 v~~EK 94 (331)
T 4hkt_A 90 IFCEK 94 (331)
T ss_dssp EEECS
T ss_pred EEEec
Confidence 99754
No 294
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=52.28 E-value=29 Score=30.81 Aligned_cols=60 Identities=10% Similarity=-0.075 Sum_probs=39.9
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceee---ec--CceeeeecCC
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIV---VN--GTTGLLHPVG 409 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v---~~--~~~G~l~~~~ 409 (470)
+++.+++..+|++|--|. .+..--.+..++..|+|+|+...|-..+.. .+ ...++++.++
T Consensus 80 ~dl~~ll~~aDVvIDFT~--p~a~~~~~~~~l~~Gv~vViGTTG~~~e~~~~L~~aa~~~~~~~a~N 144 (288)
T 3ijp_A 80 DDPESAFSNTEGILDFSQ--PQASVLYANYAAQKSLIHIIGTTGFSKTEEAQIADFAKYTTIVKSGN 144 (288)
T ss_dssp SCHHHHTTSCSEEEECSC--HHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHHTTSEEEECSC
T ss_pred CCHHHHhcCCCEEEEcCC--HHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhCcCCEEEECC
Confidence 578888889999997666 455444456789999999987666433221 11 2356666655
No 295
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=52.26 E-value=7.7 Score=32.10 Aligned_cols=40 Identities=23% Similarity=0.133 Sum_probs=26.0
Q ss_pred cccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecC
Q 012132 73 KSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
.+|||+++..+...+|. ...+..+++.+. .|++|.++-..
T Consensus 5 ~~Mkilii~gS~r~~g~t~~la~~i~~~l~-~g~~v~~~dl~ 45 (193)
T 1rtt_A 5 DDIKVLGISGSLRSGSYNSAALQEAIGLVP-PGMSIELADIS 45 (193)
T ss_dssp --CEEEEEESCCSTTCHHHHHHHHHHTTCC-TTCEEEECCCT
T ss_pred CCceEEEEECCCCCCChHHHHHHHHHHhcc-CCCeEEEEeHH
Confidence 35799999976655554 455555555555 68999888643
No 296
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=52.21 E-value=23 Score=30.56 Aligned_cols=41 Identities=17% Similarity=0.113 Sum_probs=32.3
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
.++++|.++|+..-.-.|=.....-|++.|+++|+.|..+-
T Consensus 17 ~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 17 LYFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp --CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HhhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 44567888888766555656788999999999999999985
No 297
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=52.15 E-value=29 Score=28.92 Aligned_cols=106 Identities=10% Similarity=0.010 Sum_probs=61.9
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHh---cCCCEE
Q 012132 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA---FQLPVL 386 (470)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma---~G~PvI 386 (470)
+++|+.+.. .....+....+..+ .|.......+....+...|++++-..- .+.-|+.+++.+. ..+|+|
T Consensus 4 ~ilivdd~~----~~~~~l~~~L~~~~---~v~~~~~~~~al~~~~~~dlvllD~~l-p~~~g~~~~~~lr~~~~~~~ii 75 (220)
T 1p2f_A 4 KIAVVDDDK----NILKKVSEKLQQLG---RVKTFLTGEDFLNDEEAFHVVVLDVML-PDYSGYEICRMIKETRPETWVI 75 (220)
T ss_dssp EEEEECSCH----HHHHHHHHHHTTTE---EEEEESSHHHHHHCCSCCSEEEEESBC-SSSBHHHHHHHHHHHCTTSEEE
T ss_pred eEEEEeCCH----HHHHHHHHHHHhCC---CEEEECCHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCCCcEE
Confidence 566666642 34555666665543 343333222222222456888764331 3334666666554 467877
Q ss_pred ecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 387 GTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 387 ~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
... ... ..+.+..|..|++..|.+ .++|..+|..++.
T Consensus 76 ~lt~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~L~~~i~~~~~ 116 (220)
T 1p2f_A 76 LLTLLSDDESVLKGFEAGADDYVTKPFN--PEILLARVKRFLE 116 (220)
T ss_dssp EEESCCSHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEECCCC--HHHHHHHHHHHHc
Confidence 543 222 233445678899999988 9999999988864
No 298
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=52.03 E-value=33 Score=28.76 Aligned_cols=71 Identities=20% Similarity=0.165 Sum_probs=42.2
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCCh--hhHHh--hcC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ--ETINT--ALK 150 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~ 150 (470)
|||+++. +.+.-..+++.|.+.||+|.++...... ........+..++..... ..+.. ..+
T Consensus 1 M~iiIiG-------~G~~G~~la~~L~~~g~~v~vid~~~~~--------~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ 65 (218)
T 3l4b_C 1 MKVIIIG-------GETTAYYLARSMLSRKYGVVIINKDREL--------CEEFAKKLKATIIHGDGSHKEILRDAEVSK 65 (218)
T ss_dssp CCEEEEC-------CHHHHHHHHHHHHHTTCCEEEEESCHHH--------HHHHHHHSSSEEEESCTTSHHHHHHHTCCT
T ss_pred CEEEEEC-------CCHHHHHHHHHHHhCCCeEEEEECCHHH--------HHHHHHHcCCeEEEcCCCCHHHHHhcCccc
Confidence 4666664 3467889999999999999999743211 111112235555443322 22222 357
Q ss_pred CcEEEEcccc
Q 012132 151 ADLIVLNTAV 160 (470)
Q Consensus 151 ~DiV~~~~~~ 160 (470)
.|+|++..+.
T Consensus 66 ad~vi~~~~~ 75 (218)
T 3l4b_C 66 NDVVVILTPR 75 (218)
T ss_dssp TCEEEECCSC
T ss_pred CCEEEEecCC
Confidence 9999987654
No 299
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=51.97 E-value=64 Score=23.22 Aligned_cols=107 Identities=14% Similarity=0.173 Sum_probs=61.8
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHh---cCCC
Q 012132 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---FQLP 384 (470)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma---~G~P 384 (470)
+++|+.+.. .....++...+..|. .|.......+....+.. .|++++-..- .+.-|..+++.+. ..+|
T Consensus 2 ~ilivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~a~~~~~~~~~dlil~D~~l-~~~~g~~~~~~l~~~~~~~~ 74 (121)
T 2pl1_A 2 RVLVVEDNA----LLRHHLKVQIQDAGH--QVDDAEDAKEADYYLNEHIPDIAIVDLGL-PDEDGLSLIRRWRSNDVSLP 74 (121)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEECSCC-SSSCHHHHHHHHHHTTCCSC
T ss_pred eEEEEeCcH----HHHHHHHHHHhhcCC--EEEEeCCHHHHHHHHhccCCCEEEEecCC-CCCCHHHHHHHHHhcCCCCC
Confidence 355665541 355666666666553 34433333334444433 5777764331 3334566776664 3567
Q ss_pred EEec-CCCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 385 VLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 385 vI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
+|.. ..+. ..+.+..|..+++..|-+ .+++...+..++.
T Consensus 75 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~ 117 (121)
T 2pl1_A 75 ILVLTARESWQDKVEVLSAGADDYVTKPFH--IEEVMARMQALMR 117 (121)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHHcCccceEECCCC--HHHHHHHHHHHHH
Confidence 7654 3222 233444577899999988 9999999987653
No 300
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=51.95 E-value=1e+02 Score=28.25 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=31.1
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCC
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (470)
..+||+++... .+++..++..+...|.+|.++++..-.
T Consensus 187 ~glkva~vGD~------~nva~Sl~~~l~~lG~~v~~~~P~~~~ 224 (353)
T 3sds_A 187 EGLKIAWVGDA------NNVLFDLAIAATKMGVNVAVATPRGYE 224 (353)
T ss_dssp TTCEEEEESCC------CHHHHHHHHHHHHTTCEEEEECCTTCC
T ss_pred CCCEEEEECCC------chHHHHHHHHHHHcCCEEEEECCcccC
Confidence 56899998763 268999999999999999999976543
No 301
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=51.75 E-value=20 Score=29.56 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=28.7
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|||+.+.+.-+-.|-...+.+|+..|+++|+.|.++-.+
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D 39 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTD 39 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 566666643322333688999999999999999998754
No 302
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=51.71 E-value=18 Score=32.84 Aligned_cols=40 Identities=23% Similarity=-0.034 Sum_probs=25.4
Q ss_pred CcccccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 68 PLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 68 ~~~~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
+...+++|+|++.. |....-..+++.|.++||+|.++...
T Consensus 15 ~~~~~~~~~vlVTG------atG~iG~~l~~~L~~~g~~V~~~~r~ 54 (333)
T 2q1w_A 15 VPRGSHMKKVFITG------ICGQIGSHIAELLLERGDKVVGIDNF 54 (333)
T ss_dssp ------CCEEEEET------TTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred eeecCCCCEEEEeC------CccHHHHHHHHHHHHCCCEEEEEECC
Confidence 33445567877663 33456677888899999999998754
No 303
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=51.68 E-value=97 Score=28.17 Aligned_cols=68 Identities=12% Similarity=0.084 Sum_probs=46.6
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhcCCC
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (470)
+++.++-+-+. ..+..++.++++++ .. ..++.++++ ..|+++..+. .....-.+.+|+..|++
T Consensus 37 ~~~~lvav~d~------~~~~~~~~~~~~~~----~~---~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~~gk~ 101 (354)
T 3q2i_A 37 DRAELIDVCDI------DPAALKAAVERTGA----RG---HASLTDMLAQTDADIVILTTP--SGLHPTQSIECSEAGFH 101 (354)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHHHCC----EE---ESCHHHHHHHCCCSEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCeEEEEEEcC------CHHHHHHHHHHcCC----ce---eCCHHHHhcCCCCCEEEECCC--cHHHHHHHHHHHHCCCC
Confidence 57887755553 34556677777763 11 257778887 6899988776 44444557789999999
Q ss_pred EEecC
Q 012132 385 VLGTA 389 (470)
Q Consensus 385 vI~s~ 389 (470)
|++-.
T Consensus 102 v~~EK 106 (354)
T 3q2i_A 102 VMTEK 106 (354)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 99754
No 304
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=51.56 E-value=20 Score=30.45 Aligned_cols=40 Identities=8% Similarity=0.069 Sum_probs=29.4
Q ss_pred ccEEEEEeeccC---CCch-hHHHHHHHHHHHhC--Cc-eEEEEecC
Q 012132 74 SKLVLLVSHELS---LSGG-PLLLMELAFLLRGV--GT-KVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~---~~G~-~~~~~~l~~~L~~~--G~-~V~v~~~~ 113 (470)
|||||+|..+.. .++- ...+..+++.+.+. |+ +|.++-..
T Consensus 4 MmkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~ 50 (223)
T 3u7i_A 4 MNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLY 50 (223)
T ss_dssp CCEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETT
T ss_pred cCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECc
Confidence 589999998765 4454 45666777888775 68 99998854
No 305
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=51.56 E-value=13 Score=31.10 Aligned_cols=39 Identities=8% Similarity=-0.050 Sum_probs=25.5
Q ss_pred ccccEEEEEeeccCCCchh-HHHHHHHHHHHhCCceEE-EEe
Q 012132 72 MKSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVN-WIT 111 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~-~~~~~l~~~L~~~G~~V~-v~~ 111 (470)
|.+|||+++..+...+|.. ..+..+++.+ +.|++|. ++-
T Consensus 4 M~~mkIl~I~GS~r~~s~t~~la~~~~~~~-~~g~~v~~~id 44 (199)
T 4hs4_A 4 TSPLHFVTLLGSLRKASFNAAVARALPEIA-PEGIAITPLGS 44 (199)
T ss_dssp -CCEEEEEEECCCSTTCHHHHHHHHHHHHC-CTTEEEEECCC
T ss_pred CCCCEEEEEEcCCCCCChHHHHHHHHHHHc-cCCCEEEEEEe
Confidence 5568999999877666653 4444444444 4688988 654
No 306
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=51.50 E-value=64 Score=23.12 Aligned_cols=108 Identities=10% Similarity=0.072 Sum_probs=61.4
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHH--hcCCCE
Q 012132 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAM--AFQLPV 385 (470)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAm--a~G~Pv 385 (470)
+++|+.+.. .....++...+..|. .|.......+....+. ..|++++-..- .+.-|..+++.+ ...+|+
T Consensus 3 ~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~i 75 (120)
T 2a9o_A 3 KILIVDDEK----PISDIIKFNMTKEGY--EVVTAFNGREALEQFEAEQPDIIILDLML-PEIDGLEVAKTIRKTSSVPI 75 (120)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHHCCSEEEECSSC-SSSCHHHHHHHHHHHCCCCE
T ss_pred eEEEEcCCH----HHHHHHHHHHHhcCc--EEEEecCHHHHHHHHHhCCCCEEEEeccC-CCCCHHHHHHHHHhCCCCCE
Confidence 456666542 355666666666553 3443333233333332 35887764431 233455566554 356787
Q ss_pred EecCC-CC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 386 LGTAA-GG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 386 I~s~~-~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
|.... .. ..+....|..+++..|-+ .+++.+++..++..
T Consensus 76 i~~s~~~~~~~~~~~~~~g~~~~l~Kp~~--~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 76 LMLSAKDSEFDKVIGLELGADDYVTKPFS--NRELQARVKALLRR 118 (120)
T ss_dssp EEEESCCSHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHHC
T ss_pred EEEecCCchHHHHHHHhCCHhheEeCCCC--HHHHHHHHHHHHcc
Confidence 75432 22 222344577899999988 99999999887643
No 307
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=51.28 E-value=27 Score=25.66 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=25.7
Q ss_pred ccEEEEEeeccCCCchh-HH--HHHHHHHHHhCCceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGGP-LL--LMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~-~~--~~~l~~~L~~~G~~V~v~~~~ 113 (470)
+|||+.++. .|.|.. .+ ...|-++-+++||++.|-+..
T Consensus 2 ~mkivaVta--CptGiAhTymAAeaLekaA~~~G~~ikVEtqg 42 (106)
T 2m1z_A 2 KRKIIAVTA--CATGVAHTYMAAQALKKGAKKMGNLIKVETQG 42 (106)
T ss_dssp CCEEEEEEE--CSSCHHHHHHHHHHHHHHHHHHTCEEEEEEEE
T ss_pred CccEEEEEE--CCCcHHHHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 578888874 455653 22 345566666789999999844
No 308
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.17 E-value=34 Score=30.01 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=31.4
Q ss_pred CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhc
Q 012132 270 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK 335 (470)
Q Consensus 270 ~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~ 335 (470)
..+|++++.-.. -.-..+++..+++++ .++.+.++|-|... ...+.|+++++..
T Consensus 108 ~rIIlf~ds~~~-~~~~~l~~lak~lkk---------~gI~v~vIgFG~~~--~n~~kLe~l~~~~ 161 (268)
T 4b4t_W 108 QRIVAFVCSPIS-DSRDELIRLAKTLKK---------NNVAVDIINFGEIE--QNTELLDEFIAAV 161 (268)
T ss_dssp EEEEEEECSCCS-SCHHHHHHHHHHHHH---------HTEEEEEEEESSCC--SSCCHHHHHHHHH
T ss_pred eEEEEEECCCCC-CCHHHHHHHHHHHHH---------cCCEEEEEEeCCCc--cchHHHHHHHHHh
Confidence 345666654322 245567777776655 57888888876432 1245566666654
No 309
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=50.86 E-value=21 Score=33.95 Aligned_cols=72 Identities=8% Similarity=-0.016 Sum_probs=48.2
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCC-cEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhcCC
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD-RVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQL 383 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~-~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~ 383 (470)
++++++-+-+. ..+..++.+++++.+. .+.. ..++.++++ ..|+++..+. .....-.+.+|+..|+
T Consensus 107 ~~~~lvav~d~------~~~~~~~~a~~~g~~~~~~~~---~~~~~~ll~~~~vD~V~iatp--~~~h~~~~~~al~aGk 175 (433)
T 1h6d_A 107 QHSRIEALVSG------NAEKAKIVAAEYGVDPRKIYD---YSNFDKIAKDPKIDAVYIILP--NSLHAEFAIRAFKAGK 175 (433)
T ss_dssp SSEEEEEEECS------CHHHHHHHHHHTTCCGGGEEC---SSSGGGGGGCTTCCEEEECSC--GGGHHHHHHHHHHTTC
T ss_pred CCcEEEEEEcC------CHHHHHHHHHHhCCCcccccc---cCCHHHHhcCCCCCEEEEcCC--chhHHHHHHHHHHCCC
Confidence 67887766554 2445667777777642 1222 245666676 6899998886 4555566778999999
Q ss_pred CEEecC
Q 012132 384 PVLGTA 389 (470)
Q Consensus 384 PvI~s~ 389 (470)
+|++-.
T Consensus 176 ~Vl~EK 181 (433)
T 1h6d_A 176 HVMCEK 181 (433)
T ss_dssp EEEECS
T ss_pred cEEEcC
Confidence 999853
No 310
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=50.84 E-value=14 Score=29.46 Aligned_cols=37 Identities=19% Similarity=0.044 Sum_probs=25.3
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
|++|||.+-+... |-..-..+...|.++||+|.=+..
T Consensus 1 m~~MkIaigsDha----G~~lK~~i~~~L~~~G~eV~D~G~ 37 (162)
T 2vvp_A 1 MSGMRVYLGADHA----GYELKQRIIEHLKQTGHEPIDCGA 37 (162)
T ss_dssp --CCEEEEEECHH----HHHHHHHHHHHHHHTTCEEEECSC
T ss_pred CCCCEEEEEeCch----hHHHHHHHHHHHHHCCCEEEEeCC
Confidence 4558988777543 223455688899999999987764
No 311
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=50.83 E-value=23 Score=26.54 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=22.4
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEE
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWI 110 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~ 110 (470)
|++++|+++.... .....+...|...|++|...
T Consensus 1 m~~~~Ilivdd~~------~~~~~l~~~L~~~g~~v~~~ 33 (132)
T 3crn_A 1 MSLKRILIVDDDT------AILDSTKQILEFEGYEVEIA 33 (132)
T ss_dssp --CCEEEEECSCH------HHHHHHHHHHHHTTCEEEEE
T ss_pred CCccEEEEEeCCH------HHHHHHHHHHHHCCceEEEe
Confidence 4567899988653 45566777777889988743
No 312
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=50.47 E-value=20 Score=27.20 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=23.9
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEE
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWI 110 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~ 110 (470)
++++||++..+. .....+...|.+.|++|...
T Consensus 3 ~~~~iLivdd~~------~~~~~l~~~L~~~g~~v~~~ 34 (142)
T 2qxy_A 3 LTPTVMVVDESR------ITFLAVKNALEKDGFNVIWA 34 (142)
T ss_dssp CCCEEEEECSCH------HHHHHHHHHHGGGTCEEEEE
T ss_pred CCCeEEEEeCCH------HHHHHHHHHHHhCCCEEEEE
Confidence 457899988653 56677788888889988754
No 313
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=50.40 E-value=12 Score=33.90 Aligned_cols=32 Identities=3% Similarity=-0.109 Sum_probs=26.4
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
+|||+++... ....+++++.++||+|.++...
T Consensus 2 ~m~Ililg~g--------~~~~l~~a~~~~G~~v~~~~~~ 33 (334)
T 2r85_A 2 KVRIATYASH--------SALQILKGAKDEGFETIAFGSS 33 (334)
T ss_dssp CSEEEEESST--------THHHHHHHHHHTTCCEEEESCG
T ss_pred ceEEEEECCh--------hHHHHHHHHHhCCCEEEEEECC
Confidence 6899999853 5678899999999999998754
No 314
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=50.30 E-value=22 Score=30.71 Aligned_cols=40 Identities=18% Similarity=0.072 Sum_probs=29.4
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
+||+.|++.-+-.|-...+.+|+..|+++|+.|.++-...
T Consensus 2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 4666666533223336889999999999999999987554
No 315
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=49.89 E-value=31 Score=30.06 Aligned_cols=37 Identities=16% Similarity=-0.014 Sum_probs=25.4
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
|+|||+|...-.. .....+...|.+.|++|+++....
T Consensus 4 m~~vLiV~g~~~~----~~a~~l~~aL~~~g~~V~~i~~~~ 40 (259)
T 3rht_A 4 MTRVLYCGDTSLE----TAAGYLAGLMTSWQWEFDYIPSHV 40 (259)
T ss_dssp --CEEEEESSCTT----TTHHHHHHHHHHTTCCCEEECTTS
T ss_pred CceEEEECCCCch----hHHHHHHHHHHhCCceEEEecccc
Confidence 4689999533222 346677888999999999987543
No 316
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=49.88 E-value=17 Score=27.88 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=25.5
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhCC-ceEEEEe
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG-TKVNWIT 111 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G-~~V~v~~ 111 (470)
...+.+||++.... .....+...|.+.| ++|..+.
T Consensus 17 ~~~~~~ilivdd~~------~~~~~l~~~L~~~g~~~v~~~~ 52 (146)
T 4dad_A 17 FQGMINILVASEDA------SRLAHLARLVGDAGRYRVTRTV 52 (146)
T ss_dssp CGGGCEEEEECSCH------HHHHHHHHHHHHHCSCEEEEEC
T ss_pred cCCCCeEEEEeCCH------HHHHHHHHHHhhCCCeEEEEeC
Confidence 34567999998643 45667778888888 8888754
No 317
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=49.41 E-value=36 Score=31.18 Aligned_cols=76 Identities=8% Similarity=-0.050 Sum_probs=44.8
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhC-CceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcC
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (470)
|+++||+++.. |. ....+++.|.+. |+++..++..... .........++.. ......+....+
T Consensus 3 ~~~~~vgiiG~-----G~--~g~~~~~~l~~~~~~~lvav~d~~~~-------~~~~~~~~~g~~~--~~~~~~~l~~~~ 66 (354)
T 3db2_A 3 YNPVGVAAIGL-----GR--WAYVMADAYTKSEKLKLVTCYSRTED-------KREKFGKRYNCAG--DATMEALLARED 66 (354)
T ss_dssp CCCEEEEEECC-----SH--HHHHHHHHHTTCSSEEEEEEECSSHH-------HHHHHHHHHTCCC--CSSHHHHHHCSS
T ss_pred CCcceEEEEcc-----CH--HHHHHHHHHHhCCCcEEEEEECCCHH-------HHHHHHHHcCCCC--cCCHHHHhcCCC
Confidence 45689999984 32 334567777776 7787766533221 0111222335543 344566666678
Q ss_pred CcEEEEcccchhh
Q 012132 151 ADLIVLNTAVAGK 163 (470)
Q Consensus 151 ~DiV~~~~~~~~~ 163 (470)
+|+|++.++...+
T Consensus 67 ~D~V~i~tp~~~h 79 (354)
T 3db2_A 67 VEMVIITVPNDKH 79 (354)
T ss_dssp CCEEEECSCTTSH
T ss_pred CCEEEEeCChHHH
Confidence 9999998876443
No 318
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=49.24 E-value=31 Score=27.61 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=24.0
Q ss_pred HHHHhcCEEEEccCCcccccchHHHH---HHhcCCCEEec
Q 012132 352 PYLAAIDVLVQNSQAWGECFGRITIE---AMAFQLPVLGT 388 (470)
Q Consensus 352 ~~~~~aDv~v~pS~~~~E~~g~~~lE---Ama~G~PvI~s 388 (470)
..+..||++|.--.. .+.-..+..| |.+.|+||++-
T Consensus 65 ~~i~~aD~viA~ldg-~~~D~Gt~~EiG~A~a~gkPVi~~ 103 (162)
T 3ehd_A 65 ENVLASDLLVALLDG-PTIDAGVASEIGVAYAKGIPVVAL 103 (162)
T ss_dssp HHHHTCSEEEEECCS-SSCCHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHCCEEEEECCC-CCCCCCHHHHHHHHHHCCCEEEEE
Confidence 347899998864321 2333445555 88999999975
No 319
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=49.18 E-value=1.5e+02 Score=26.62 Aligned_cols=42 Identities=12% Similarity=0.015 Sum_probs=27.6
Q ss_pred ccccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecC
Q 012132 72 MKSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|.+++|.++.+......- .....-+.+++.+.|+++.++...
T Consensus 1 ~~~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~ 43 (350)
T 3h75_A 1 MSLTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAE 43 (350)
T ss_dssp --CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECT
T ss_pred CCCCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 456789999987533121 355666667777889999888643
No 320
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=49.03 E-value=22 Score=27.78 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=24.2
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEE
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN 108 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~ 108 (470)
.+++++|+++..+. .....+...|.+.|++|.
T Consensus 33 ~~~~~~Ilivdd~~------~~~~~l~~~L~~~g~~v~ 64 (157)
T 3hzh_A 33 TGIPFNVLIVDDSV------FTVKQLTQIFTSEGFNII 64 (157)
T ss_dssp TTEECEEEEECSCH------HHHHHHHHHHHHTTCEEE
T ss_pred CCCceEEEEEeCCH------HHHHHHHHHHHhCCCeEE
Confidence 34568999998643 556677788888899986
No 321
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=48.88 E-value=60 Score=29.41 Aligned_cols=79 Identities=11% Similarity=0.018 Sum_probs=47.7
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCC--CchhHHHhhhhhhhh--cceeeEecCChhhHHh
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS--EEDEVIYSLEHKMWD--RGVQVISAKGQETINT 147 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 147 (470)
...+||+++.... .+++..++..+...|.+|+++++..-. +.............. .|..+.........
T Consensus 159 l~gl~va~vGD~~-----~~va~Sl~~~~~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~ea-- 231 (328)
T 3grf_A 159 FKGIKFAYCGDSM-----NNVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKG-- 231 (328)
T ss_dssp GGGCCEEEESCCS-----SHHHHHHHHHHHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHH--
T ss_pred cCCcEEEEeCCCC-----cchHHHHHHHHHHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHH--
Confidence 3467899988631 278999999999999999999875433 332222222222222 45444333333322
Q ss_pred hcCCcEEEEc
Q 012132 148 ALKADLIVLN 157 (470)
Q Consensus 148 ~~~~DiV~~~ 157 (470)
....|+|+..
T Consensus 232 v~~aDvvytd 241 (328)
T 3grf_A 232 CEGVDVVYTD 241 (328)
T ss_dssp HTTCSEEEEC
T ss_pred hcCCCEEEec
Confidence 2468998875
No 322
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=48.78 E-value=20 Score=29.76 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=27.1
Q ss_pred cEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
||||+|..+...++. ...+..+++.+ +.|++|.++-..
T Consensus 1 MkiLiI~gspr~~s~t~~l~~~~~~~~-~~g~~v~~~dL~ 39 (196)
T 3lcm_A 1 MKILIVYTHPNPTSFNAEILKQVQTNL-SKEHTVSTLDLY 39 (196)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHS-CTTSEEEEEETT
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHh-cCCCeEEEEEcc
Confidence 789999876554543 35556666666 779999998854
No 323
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=48.59 E-value=25 Score=29.76 Aligned_cols=40 Identities=15% Similarity=0.093 Sum_probs=28.5
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
+|++.+++.-+-.|-.....+|+..|+++|+.|.++-...
T Consensus 2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 4565555433223336889999999999999999987543
No 324
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=48.46 E-value=24 Score=26.67 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=24.7
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
+++++||++.... .....+...|.+.|++|..+.
T Consensus 5 ~~~~~iLivdd~~------~~~~~l~~~L~~~g~~v~~~~ 38 (142)
T 3cg4_A 5 EHKGDVMIVDDDA------HVRIAVKTILSDAGFHIISAD 38 (142)
T ss_dssp -CCCEEEEECSCH------HHHHHHHHHHHHTTCEEEEES
T ss_pred CCCCeEEEEcCCH------HHHHHHHHHHHHCCeEEEEeC
Confidence 4567899998653 566778888888899876543
No 325
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=48.44 E-value=49 Score=29.75 Aligned_cols=89 Identities=13% Similarity=0.071 Sum_probs=52.1
Q ss_pred HHHHHhcCEEEEccCCcccccchHHHHHHhc-CCCEEecCCCCccee--eec---------------CceeeeecCCCCC
Q 012132 351 APYLAAIDVLVQNSQAWGECFGRITIEAMAF-QLPVLGTAAGGTTEI--VVN---------------GTTGLLHPVGKEG 412 (470)
Q Consensus 351 ~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~-G~PvI~s~~~g~~e~--v~~---------------~~~G~l~~~~d~~ 412 (470)
...++.||++|..... .|+|--.+++++.. ++++|.... ++.-+ -.+ ..--+..+|.+
T Consensus 65 ~~~l~~ADlvv~~G~~-lE~w~~k~~~~~~~~~~~~v~~s~-~i~~~~~~~~~~~~~~~~~~~~~~~~DPHvWldp~n-- 140 (312)
T 2o1e_A 65 IANIQDADLFVYNSEY-METWVPSAEKSMGQGHAVFVNASK-GIDLMEGSEEEHEEHDHGEHEHSHAMDPHVWLSPVL-- 140 (312)
T ss_dssp HHHHHHSSEEEESCTT-TSTTHHHHHHTTCSSSCEEEETTT-TCCCCCC----------------CCCCCGGGGSHHH--
T ss_pred HHHHhcCCEEEEcCCC-hHhHHHHHHHhcccCCCeEEEecC-CcccccCcccccccccccccccCCCCCCCcccCHHH--
Confidence 4457899999987763 78877778877653 344554332 22110 000 01113344444
Q ss_pred hHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHH
Q 012132 413 ITPLAKNIVKLAT--HVERRLTMGKRGYERVKE 443 (470)
Q Consensus 413 ~~~la~~i~~ll~--~~~~~~~~~~~a~~~~~~ 443 (470)
...+++.|.+.|. ||+-...+.+|+.++..+
T Consensus 141 ~~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~ 173 (312)
T 2o1e_A 141 AQKEVKNITAQIVKQDPDNKEYYEKNSKEYIAK 173 (312)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 6677777777766 787777777777776644
No 326
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=48.29 E-value=9.9 Score=35.20 Aligned_cols=42 Identities=17% Similarity=0.039 Sum_probs=27.5
Q ss_pred ccccEEEEEeeccCCC-chh-HHHHHHHHHHHhCCceEEEEecC
Q 012132 72 MKSKLVLLVSHELSLS-GGP-LLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~-G~~-~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|++|||+++....+.- ... .....++++|.+.||+|..+...
T Consensus 1 m~~~~v~vl~gg~s~E~~vs~~s~~~v~~al~~~g~~v~~i~~~ 44 (364)
T 2i87_A 1 MTKENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYIT 44 (364)
T ss_dssp --CEEEEEEEECSSSCHHHHHHHHHHHHHTSCTTTEEEEEEEEC
T ss_pred CCCcEEEEEECCCCccchhHHHHHHHHHHHHhhcCCEEEEEEEc
Confidence 5678999998522110 000 34577899999999999988744
No 327
>1jf8_A Arsenate reductase; ptpase I fold, P-loop, sulfinic acid, oxidoreductase; 1.12A {Staphylococcus aureus} SCOP: c.44.1.1 PDB: 1jfv_A 2fxi_A 1lju_A* 1rxi_A 1rxe_A 1ljl_A 2cd7_A 1lk0_A
Probab=48.25 E-value=88 Score=23.76 Aligned_cols=81 Identities=14% Similarity=0.062 Sum_probs=41.0
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEe--cCChhhHHhhc
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS--AKGQETINTAL 149 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 149 (470)
|+++|||||+..- ..-+..+..+.+.+.. .++.+.+..-... .........+.+.|+.+-. .+..... ...
T Consensus 1 M~~~~VLFVC~gN--~cRSpmAEa~~~~~~~--~~~~v~SAGt~~~--~~~p~a~~~l~~~Gid~s~~~ar~l~~~-~~~ 73 (131)
T 1jf8_A 1 MDKKTIYFISTGN--SARSQMAEGWGKEILG--EGWNVYSAGIETH--GVNPKAIEAMKEVDIDISNHTSDLIDND-ILK 73 (131)
T ss_dssp -CCEEEEEEESSS--SSHHHHHHHHHHHHST--TTEEEEEEESSCC--CCCHHHHHHHHHTTCCCTTCCCCBCCHH-HHH
T ss_pred CCCCEEEEEcCCc--chHHHHHHHHHHHhcC--CCEEEEcCcCCCC--CCCHHHHHHHHHcCCCcccCccccCChH-Hhc
Confidence 4467899999642 1123455556666553 3455555221111 1222234556677887632 2222221 124
Q ss_pred CCcEEEEccc
Q 012132 150 KADLIVLNTA 159 (470)
Q Consensus 150 ~~DiV~~~~~ 159 (470)
.+|+|++-+.
T Consensus 74 ~~D~Ii~m~~ 83 (131)
T 1jf8_A 74 QSDLVVTLCS 83 (131)
T ss_dssp HCSEEEECSH
T ss_pred cCCEEEEcCc
Confidence 6899998863
No 328
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=48.05 E-value=35 Score=32.02 Aligned_cols=102 Identities=11% Similarity=0.047 Sum_probs=62.9
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc
Q 012132 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~ 347 (470)
.+++.|+.+|-=.- | ..-++++.++...... ..++++++-+.+. ..+..++.+++++.+. + .
T Consensus 24 s~klrvgiIG~G~i--g-~~h~~~~~~~~~~~~~---~~~~~elvav~d~------~~~~a~~~a~~~~~~~-~-----y 85 (412)
T 4gqa_A 24 SARLNIGLIGSGFM--G-QAHADAYRRAAMFYPD---LPKRPHLYALADQ------DQAMAERHAAKLGAEK-A-----Y 85 (412)
T ss_dssp -CEEEEEEECCSHH--H-HHHHHHHHHHHHHCTT---SSSEEEEEEEECS------SHHHHHHHHHHHTCSE-E-----E
T ss_pred cccceEEEEcCcHH--H-HHHHHHHHhccccccc---cCCCeEEEEEEcC------CHHHHHHHHHHcCCCe-E-----E
Confidence 45688888873111 1 1345555554321111 1145677766664 4567788888887641 1 1
Q ss_pred CCHHHHHH--hcCEEEEccCCcccccchHHHHHHhcCCCEEecC
Q 012132 348 LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389 (470)
Q Consensus 348 ~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~ 389 (470)
.++.++++ ..|+++..+- ...-.-.+++|+..|++|++=.
T Consensus 86 ~d~~~ll~~~~vD~V~I~tp--~~~H~~~~~~al~aGkhVl~EK 127 (412)
T 4gqa_A 86 GDWRELVNDPQVDVVDITSP--NHLHYTMAMAAIAAGKHVYCEK 127 (412)
T ss_dssp SSHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCEEEEES
T ss_pred CCHHHHhcCCCCCEEEECCC--cHHHHHHHHHHHHcCCCeEeec
Confidence 57778886 4688888776 4444566889999999999753
No 329
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=47.75 E-value=32 Score=26.30 Aligned_cols=71 Identities=13% Similarity=0.070 Sum_probs=41.5
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCCh--hhHHh--hc
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ--ETINT--AL 149 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~ 149 (470)
+++|+++.. .+.-..+++.|.+.|++|.++..... ....+...+..++..... ..+.. ..
T Consensus 6 ~~~v~I~G~-------G~iG~~la~~L~~~g~~V~~id~~~~---------~~~~~~~~~~~~~~gd~~~~~~l~~~~~~ 69 (141)
T 3llv_A 6 RYEYIVIGS-------EAAGVGLVRELTAAGKKVLAVDKSKE---------KIELLEDEGFDAVIADPTDESFYRSLDLE 69 (141)
T ss_dssp CCSEEEECC-------SHHHHHHHHHHHHTTCCEEEEESCHH---------HHHHHHHTTCEEEECCTTCHHHHHHSCCT
T ss_pred CCEEEEECC-------CHHHHHHHHHHHHCCCeEEEEECCHH---------HHHHHHHCCCcEEECCCCCHHHHHhCCcc
Confidence 457777752 25677899999999999999864321 112223345555443322 12221 24
Q ss_pred CCcEEEEcccc
Q 012132 150 KADLIVLNTAV 160 (470)
Q Consensus 150 ~~DiV~~~~~~ 160 (470)
+.|+|+...+.
T Consensus 70 ~~d~vi~~~~~ 80 (141)
T 3llv_A 70 GVSAVLITGSD 80 (141)
T ss_dssp TCSEEEECCSC
T ss_pred cCCEEEEecCC
Confidence 78988876653
No 330
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=47.68 E-value=73 Score=22.68 Aligned_cols=106 Identities=7% Similarity=0.070 Sum_probs=61.1
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHh---cCCC
Q 012132 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---FQLP 384 (470)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma---~G~P 384 (470)
+++|+.+.. .....++...++.|. .|.......+....+.. .|++++-..- .+.-|..+++.+. ...|
T Consensus 3 ~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~~ 75 (116)
T 3a10_A 3 RILVVDDEP----NIRELLKEELQEEGY--EIDTAENGEEALKKFFSGNYDLVILDIEM-PGISGLEVAGEIRKKKKDAK 75 (116)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEECSCC-SSSCHHHHHHHHHHHCTTCC
T ss_pred EEEEEeCCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHhcCCCCEEEEECCC-CCCCHHHHHHHHHccCCCCe
Confidence 456666642 356667777776654 35444433344444433 5777764331 2334566666553 4577
Q ss_pred EEec-CCCC-cceeeecCceeeeecCCCCChHHHHHHHHHHH
Q 012132 385 VLGT-AAGG-TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 424 (470)
Q Consensus 385 vI~s-~~~g-~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 424 (470)
+|.. ..+. ..+....|..+++..|-+ .+++..++..++
T Consensus 76 ii~~s~~~~~~~~~~~~g~~~~l~Kp~~--~~~l~~~i~~~~ 115 (116)
T 3a10_A 76 IILLTAYSHYRSDMSSWAADEYVVKSFN--FDELKEKVKKLL 115 (116)
T ss_dssp EEEEESCGGGGGCGGGGGSSEEEECCSS--THHHHHHHHHHT
T ss_pred EEEEECCcchHHHHHhccccceEECCCC--HHHHHHHHHHHh
Confidence 7643 2221 133444567789999888 899999887764
No 331
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=47.68 E-value=82 Score=25.07 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=25.8
Q ss_pred HHHHHhcCEEEEcc---CCcccccchHHHH---HHhcCCCEEecC
Q 012132 351 APYLAAIDVLVQNS---QAWGECFGRITIE---AMAFQLPVLGTA 389 (470)
Q Consensus 351 ~~~~~~aDv~v~pS---~~~~E~~g~~~lE---Ama~G~PvI~s~ 389 (470)
...+..||++|.-- +. .+.-+.+..| |.|.|+|||+-.
T Consensus 62 ~~~i~~aD~vVA~ldpf~g-~~~D~GTafEiGyA~AlgKPVi~l~ 105 (161)
T 2f62_A 62 IQMIKDCDAVIADLSPFRG-HEPDCGTAFEVGCAAALNKMVLTFT 105 (161)
T ss_dssp HHHHHHCSEEEEECCCCSS-SSCCHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHhCCEEEEEecCCCC-CCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 46789999988642 21 2333446665 789999999853
No 332
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=47.59 E-value=45 Score=29.89 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=21.5
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
+|||+++.. | ..-..++..|.+.|++|+++..
T Consensus 2 ~mkI~IiGa-----G--aiG~~~a~~L~~~g~~V~~~~r 33 (312)
T 3hn2_A 2 SLRIAIVGA-----G--ALGLYYGALLQRSGEDVHFLLR 33 (312)
T ss_dssp --CEEEECC-----S--TTHHHHHHHHHHTSCCEEEECS
T ss_pred CCEEEEECc-----C--HHHHHHHHHHHHCCCeEEEEEc
Confidence 478998863 2 1234457778888999999875
No 333
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=47.58 E-value=19 Score=32.20 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=26.2
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
+|+||+.. |....-..+++.|.++||+|.+++..
T Consensus 2 ~~~vlVtG------atG~iG~~l~~~L~~~g~~V~~~~r~ 35 (311)
T 3m2p_A 2 SLKIAVTG------GTGFLGQYVVESIKNDGNTPIILTRS 35 (311)
T ss_dssp CCEEEEET------TTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEEC------CCcHHHHHHHHHHHhCCCEEEEEeCC
Confidence 47777664 33466778899999999999999865
No 334
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=47.43 E-value=92 Score=26.53 Aligned_cols=109 Identities=12% Similarity=0.091 Sum_probs=64.0
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHhc--CC
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF--QL 383 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~--G~ 383 (470)
..+++|+.+.. .....++...+..+. .|.......+....+.. .|++++--.- .+.-|+.+++.+.. .+
T Consensus 37 ~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~DlvllD~~l-p~~~G~~l~~~lr~~~~~ 109 (249)
T 3q9s_A 37 EQRILVIEDDH----DIANVLRMDLTDAGY--VVDHADSAMNGLIKAREDHPDLILLDLGL-PDFDGGDVVQRLRKNSAL 109 (249)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHHHSCCSEEEEECCS-CHHHHHHHHHHHHTTCCC
T ss_pred CCEEEEEECCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHhcCCCCEEEEcCCC-CCCCHHHHHHHHHcCCCC
Confidence 35677776642 355666666665543 34333332333333332 5777764331 33446666666553 46
Q ss_pred CEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 384 PVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 384 PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
|||.-.... ..+.+..|..|++..|.+ .++|..+|..++.
T Consensus 110 ~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~--~~~L~~~i~~~l~ 153 (249)
T 3q9s_A 110 PIIVLTARDTVEEKVRLLGLGADDYLIKPFH--PDELLARVKVQLR 153 (249)
T ss_dssp CEEEEESCCSHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHC
T ss_pred CEEEEECCCCHHHHHHHHHCCCcEEEECCCC--HHHHHHHHHHHHh
Confidence 777543222 233445678899999988 9999999998876
No 335
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=47.41 E-value=26 Score=31.55 Aligned_cols=36 Identities=19% Similarity=0.067 Sum_probs=25.4
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
++|+||+.. |....-..+++.|.++||+|.++....
T Consensus 13 ~~~~vlVTG------atG~iG~~l~~~L~~~g~~V~~~~r~~ 48 (335)
T 1rpn_A 13 MTRSALVTG------ITGQDGAYLAKLLLEKGYRVHGLVARR 48 (335)
T ss_dssp --CEEEEET------TTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred cCCeEEEEC------CCChHHHHHHHHHHHCCCeEEEEeCCC
Confidence 356787664 334566778889999999999988543
No 336
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=47.30 E-value=28 Score=26.20 Aligned_cols=110 Identities=6% Similarity=0.068 Sum_probs=65.5
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHH--HhcCEEEEccCCccc--ccchHHHHHHhc--
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGE--CFGRITIEAMAF-- 381 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~--~~aDv~v~pS~~~~E--~~g~~~lEAma~-- 381 (470)
..+++|+.+.. .....++...++.|. .|.......+....+ ...|++++-..- .+ .-|..+++.+..
T Consensus 6 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~D~~l-~~~~~~g~~~~~~l~~~~ 78 (136)
T 3kto_A 6 HPIIYLVDHQK----DARAALSKLLSPLDV--TIQCFASAESFMRQQISDDAIGMIIEAHL-EDKKDSGIELLETLVKRG 78 (136)
T ss_dssp -CEEEEECSCH----HHHHHHHHHHTTSSS--EEEEESSHHHHTTSCCCTTEEEEEEETTG-GGBTTHHHHHHHHHHHTT
T ss_pred CCeEEEEcCCH----HHHHHHHHHHHHCCc--EEEEeCCHHHHHHHHhccCCCEEEEeCcC-CCCCccHHHHHHHHHhCC
Confidence 45778887752 356667777776654 344333222222222 225777765431 34 456666666543
Q ss_pred -CCCEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 382 -QLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 382 -G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
.+|+|... ... ..+.+..|..+++..|-+ .++|..+|.+++..
T Consensus 79 ~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~--~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 79 FHLPTIVMASSSDIPTAVRAMRASAADFIEKPFI--EHVLVHDVQQIING 126 (136)
T ss_dssp CCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBC--HHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCC--HHHHHHHHHHHHhc
Confidence 67877543 222 233455678899999988 99999999988763
No 337
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=47.27 E-value=39 Score=28.86 Aligned_cols=35 Identities=17% Similarity=0.022 Sum_probs=24.1
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
+.|+.+|+ ||..-.-..+++.|.++|++|.+....
T Consensus 3 ~~k~~lVT-----Gas~gIG~~ia~~l~~~G~~V~~~~~~ 37 (246)
T 3osu_A 3 MTKSALVT-----GASRGIGRSIALQLAEEGYNVAVNYAG 37 (246)
T ss_dssp CSCEEEET-----TCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEE-----CCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 34555555 233445677899999999999887643
No 338
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=46.89 E-value=67 Score=29.12 Aligned_cols=70 Identities=16% Similarity=0.135 Sum_probs=48.5
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHhcCCC
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLP 384 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (470)
++++++-+-+. ..+..++.++++++.. .. .+++.++++. .|+++..+. .....-.+.+|+..|++
T Consensus 26 ~~~~l~av~d~------~~~~~~~~~~~~g~~~--~~---~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~~Gk~ 92 (344)
T 3mz0_A 26 SGAEIVAVTDV------NQEAAQKVVEQYQLNA--TV---YPNDDSLLADENVDAVLVTSW--GPAHESSVLKAIKAQKY 92 (344)
T ss_dssp SSEEEEEEECS------SHHHHHHHHHHTTCCC--EE---ESSHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEEcC------CHHHHHHHHHHhCCCC--ee---eCCHHHHhcCCCCCEEEECCC--chhHHHHHHHHHHCCCc
Confidence 78888765553 3556677788776421 11 2677888876 899998776 44445566789999999
Q ss_pred EEecC
Q 012132 385 VLGTA 389 (470)
Q Consensus 385 vI~s~ 389 (470)
|++-.
T Consensus 93 vl~EK 97 (344)
T 3mz0_A 93 VFCEK 97 (344)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 99743
No 339
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=46.83 E-value=31 Score=29.36 Aligned_cols=38 Identities=8% Similarity=-0.012 Sum_probs=30.9
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
+||.++|+...+-.|=......|++.|+++|+.|..+-
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 46778888766555657888999999999999998875
No 340
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=46.82 E-value=1.2e+02 Score=24.93 Aligned_cols=108 Identities=13% Similarity=0.103 Sum_probs=64.7
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHh---cCC
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQL 383 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G~ 383 (470)
.+++|+.+.. .....++...+..|. .|.......+....+. ..|++++-..- .+.-|+.+++.+. ..+
T Consensus 3 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~~dlvllD~~l-~~~~g~~~~~~lr~~~~~~ 75 (225)
T 1kgs_A 3 VRVLVVEDER----DLADLITEALKKEMF--TVDVCYDGEEGMYMALNEPFDVVILDIML-PVHDGWEILKSMRESGVNT 75 (225)
T ss_dssp CEEEEECSSH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHHTTCCC
T ss_pred ceEEEEeCCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCCC
Confidence 3566666642 356667777766553 3443333333333333 35887764431 3334666666654 467
Q ss_pred CEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 384 PVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 384 PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
|+|...... ..+.+..|..|++..|.+ .++|..+|..++.
T Consensus 76 ~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~l~~~i~~~~~ 119 (225)
T 1kgs_A 76 PVLMLTALSDVEYRVKGLNMGADDYLPKPFD--LRELIARVRALIR 119 (225)
T ss_dssp CEEEEESSCHHHHHHHTCCCCCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHhCCccEEEeCCCC--HHHHHHHHHHHHh
Confidence 887543222 234455677899999988 9999999988865
No 341
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=46.80 E-value=30 Score=27.11 Aligned_cols=39 Identities=31% Similarity=0.225 Sum_probs=28.0
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
.|.+|||.+=+... |-..-..+.+.|.++||+|.=+...
T Consensus 4 ~m~~mkI~igsDha----G~~lK~~i~~~L~~~G~eV~D~G~~ 42 (148)
T 4em8_A 4 SMVVKRVFLSSDHA----GVELRLFLSAYLRDLGCEVFDCGCD 42 (148)
T ss_dssp CCSCSEEEEEECGG----GHHHHHHHHHHHHHTTCEEEECCCC
T ss_pred cceeeEEEEEECch----hHHHHHHHHHHHHHCCCEEEEeCCC
Confidence 45568988877643 2345667888999999999876543
No 342
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=46.78 E-value=48 Score=24.34 Aligned_cols=76 Identities=8% Similarity=0.041 Sum_probs=45.4
Q ss_pred ceEE-EEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEec-ccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhc--CC
Q 012132 308 SVHA-VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN-KTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAF--QL 383 (470)
Q Consensus 308 ~~~l-~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g-~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~--G~ 383 (470)
..++ ++++.|.... =.-..+++.+++.|++ +.... ...+....+...|++++.-. =.|-..=++..+- |+
T Consensus 6 ~mkIlL~C~aGmSTs-llv~km~~~a~~~gi~--v~i~a~~~~~~~~~~~~~DvvLLgPQ---V~y~~~~ik~~~~~~~i 79 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSA-QLANAINEGANLTEVR--VIANSGAYGAHYDIMGVYDLIILAPQ---VRSYYREMKVDAERLGI 79 (108)
T ss_dssp CEEEEEEESSSSHHH-HHHHHHHHHHHHHTCS--EEEEEEETTSCTTTGGGCSEEEECGG---GGGGHHHHHHHHTTTTC
T ss_pred CceEEEECCCCCCHH-HHHHHHHHHHHHCCCc--eEEEEcchHHHHhhccCCCEEEEChH---HHHHHHHHHHHhhhcCC
Confidence 4444 4455553221 2567788888888875 44432 22456667788999998654 2233444555543 88
Q ss_pred CEEecC
Q 012132 384 PVLGTA 389 (470)
Q Consensus 384 PvI~s~ 389 (470)
||.+-+
T Consensus 80 pV~vI~ 85 (108)
T 3nbm_A 80 QIVATR 85 (108)
T ss_dssp EEEECC
T ss_pred cEEEeC
Confidence 988765
No 343
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=46.69 E-value=17 Score=32.32 Aligned_cols=40 Identities=10% Similarity=-0.052 Sum_probs=27.3
Q ss_pred cccEEEEEeeccCCCchhH---HHHHHHHHHHhCCceEEEEecC
Q 012132 73 KSKLVLLVSHELSLSGGPL---LLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~---~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|+|||+++....... -+. ....++++|.++||+|.++...
T Consensus 1 m~~~i~il~gg~s~e-~~~s~~~~~~l~~al~~~G~~v~~~~~~ 43 (306)
T 1iow_A 1 MTDKIAVLLGGTSAE-REVSLNSGAAVLAGLREGGIDAYPVDPK 43 (306)
T ss_dssp CCCEEEEECCCSSTT-HHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCcEEEEEeCCCCcc-ceEcHHhHHHHHHHHHHCCCeEEEEecC
Confidence 358999997422110 011 4568999999999999988754
No 344
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=46.62 E-value=1.2e+02 Score=24.67 Aligned_cols=110 Identities=11% Similarity=0.057 Sum_probs=65.3
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEE-EecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhc--CC
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF--QL 383 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~-~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~--G~ 383 (470)
.+++|+.+.. .....+.......|. .|. ......+....+. ..|++++-..- .+.-|+.+++.+.. ..
T Consensus 14 ~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~~al~~~~~~~~dlvi~D~~~-p~~~g~~~~~~l~~~~~~ 86 (205)
T 1s8n_A 14 RRVLIAEDEA----LIRMDLAEMLREEGY--EIVGEAGDGQEAVELAELHKPDLVIMDVKM-PRRDGIDAASEIASKRIA 86 (205)
T ss_dssp CEEEEECSSH----HHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHCCSEEEEESSC-SSSCHHHHHHHHHHTTCS
T ss_pred ccEEEEECCH----HHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHhhcCCCEEEEeCCC-CCCChHHHHHHHHhcCCC
Confidence 5777777652 356667777766554 233 2333233333333 35887764431 33346666666542 34
Q ss_pred CEEec-CCCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhCH
Q 012132 384 PVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 427 (470)
Q Consensus 384 PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 427 (470)
|+|.. .... ..+.+..|..+++..|-+ .++|..+|..++...
T Consensus 87 pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 87 PIVVLTAFSQRDLVERARDAGAMAYLVKPFS--ISDLIPAIELAVSRF 132 (205)
T ss_dssp CEEEEEEGGGHHHHHTTGGGSCEEEEEESCC--HHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHhcCCcEEEeCCCC--HHHHHHHHHHHHHHH
Confidence 66643 2222 234455678899999988 999999999888643
No 345
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=46.39 E-value=1.6e+02 Score=26.14 Aligned_cols=142 Identities=15% Similarity=0.085 Sum_probs=73.1
Q ss_pred EEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCc-eEEEEEeCCCCcChHHHHHHHHHHHhcCCC-CcEEEecccCCH
Q 012132 273 FAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS-VHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKTLTV 350 (470)
Q Consensus 273 i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~-~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-~~V~~~g~~~~~ 350 (470)
++.+..-.+.|.++.|+++.+ ++|. +.+-..|.|. ...-..+.+.+..|+. .+|.|.|..+.+
T Consensus 105 ~lvv~~~s~~~sl~dL~~~ak-----------~~p~~~~~g~~g~Gs----~~hl~~~~l~~~~G~~~~~Vpy~g~~~a~ 169 (301)
T 2qpq_A 105 VFVVPAGSKYKTLGELMAAAK-----------QTNTQVTYGSCGNGT----PQHLAGELLNVSAKTHMVHVPYKGCGPAL 169 (301)
T ss_dssp EEEEETTCSCCSHHHHHHHTC-----------SSSCCCEEEESSTTS----HHHHHHHHHHHHHTCCCEEEECSSHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHH-----------hCCCceEEecCCCCc----HHHHHHHHHHHHhCCCeEEeccCChHHHH
Confidence 344555567888888887654 2242 3443333332 1222233444556664 245555544455
Q ss_pred HHHHH-hcCEEEEccCCcccccchHHHHHHhcCCC-EEe-c---------CCCCcce-----eeecCceeeeecCCCC--
Q 012132 351 APYLA-AIDVLVQNSQAWGECFGRITIEAMAFQLP-VLG-T---------AAGGTTE-----IVVNGTTGLLHPVGKE-- 411 (470)
Q Consensus 351 ~~~~~-~aDv~v~pS~~~~E~~g~~~lEAma~G~P-vI~-s---------~~~g~~e-----~v~~~~~G~l~~~~d~-- 411 (470)
.+++. ..|+.+...- .+.+....|.- +|+ + +++-+.| +......|++++.+-.
T Consensus 170 ~al~~G~vD~~~~~~~--------~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~ 241 (301)
T 2qpq_A 170 NDVLGSQIGLAVVTAS--------SAIPFIKAGKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMA 241 (301)
T ss_dssp HHHHTTSSSCEEEEHH--------HHHHHHHTTSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHH
T ss_pred HHHHCCCccEEEEcHH--------HHHHHHhcCCeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCCHH
Confidence 55553 4787775432 34555666642 222 1 1111111 1112346788887740
Q ss_pred ChHHHHHHHHHHHhCHHHHHHHHHHH
Q 012132 412 GITPLAKNIVKLATHVERRLTMGKRG 437 (470)
Q Consensus 412 ~~~~la~~i~~ll~~~~~~~~~~~~a 437 (470)
-.+.|.+++.+++.+++.++.+.+.+
T Consensus 242 vv~~l~~al~~~~~~~~~~~~~~~~g 267 (301)
T 2qpq_A 242 VRQKLYDGIAKVMQRDDVQKKLADLG 267 (301)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHCC
Confidence 12456667777777888777765543
No 346
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=46.27 E-value=18 Score=26.64 Aligned_cols=34 Identities=32% Similarity=0.308 Sum_probs=23.2
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
||+++|+++.... .....+...|.+.|++|....
T Consensus 3 mm~~~ilivdd~~------~~~~~l~~~L~~~g~~v~~~~ 36 (127)
T 2gkg_A 3 HMSKKILIVESDT------ALSATLRSALEGRGFTVDETT 36 (127)
T ss_dssp ---CEEEEECSCH------HHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCeEEEEeCCH------HHHHHHHHHHHhcCceEEEec
Confidence 5567999998653 456677788888899887543
No 347
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=46.14 E-value=29 Score=26.83 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=24.9
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEE
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWI 110 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~ 110 (470)
+++++||++.... .....+...|.+.|++|..+
T Consensus 5 ~~~~~iLivdd~~------~~~~~l~~~L~~~g~~v~~~ 37 (154)
T 2rjn_A 5 YKNYTVMLVDDEQ------PILNSLKRLIKRLGCNIITF 37 (154)
T ss_dssp CSCCEEEEECSCH------HHHHHHHHHHHTTTCEEEEE
T ss_pred CCCCeEEEEcCCH------HHHHHHHHHHHHcCCeEEEe
Confidence 4568999998653 56677788888899988754
No 348
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=46.12 E-value=39 Score=29.43 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=25.6
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|.++|+.+|+ ||..-.-..+++.|.++|++|.+....
T Consensus 23 m~~~k~vlIT-----Gas~gIG~a~a~~l~~~G~~V~~~~~~ 59 (272)
T 4e3z_A 23 MSDTPVVLVT-----GGSRGIGAAVCRLAARQGWRVGVNYAA 59 (272)
T ss_dssp -CCSCEEEET-----TTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred ccCCCEEEEE-----CCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 4445677776 233456678899999999999877543
No 349
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=46.07 E-value=86 Score=24.88 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=29.8
Q ss_pred cccEEEEEeeccCCCc----hhHHHHHHHHHHHhCCceEEEEec
Q 012132 73 KSKLVLLVSHELSLSG----GPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G----~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
++++|+++..+...|- .......+.+.|.+.|..+.++..
T Consensus 1 ~~~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~ 44 (185)
T 3hp4_A 1 MDNTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINA 44 (185)
T ss_dssp -CEEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEEEC
Confidence 3578999998876532 236778888999988888888863
No 350
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=46.05 E-value=52 Score=28.48 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=23.7
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
|+.+|+ ||..-.-..+++.|.+.|++|.++....
T Consensus 28 k~vlVT-----Gas~gIG~aia~~l~~~G~~V~~~~r~~ 61 (260)
T 3gem_A 28 APILIT-----GASQRVGLHCALRLLEHGHRVIISYRTE 61 (260)
T ss_dssp CCEEES-----STTSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CEEEEE-----CCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 455555 2334466788999999999998887543
No 351
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=45.87 E-value=29 Score=29.98 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=28.4
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
++++.+++.-+-.|-...+.+|+..|+++|+.|.++-.+.
T Consensus 2 ~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 2 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 4555555433223336889999999999999999987543
No 352
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=45.84 E-value=23 Score=32.01 Aligned_cols=39 Identities=15% Similarity=0.004 Sum_probs=28.0
Q ss_pred cccccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 69 ~~~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
...++.|+||+.. |....-..+++.|.++||+|.++...
T Consensus 15 ~~~~~~~~vlVTG------asG~iG~~l~~~L~~~g~~V~~~~r~ 53 (330)
T 2pzm_A 15 VPRGSHMRILITG------GAGCLGSNLIEHWLPQGHEILVIDNF 53 (330)
T ss_dssp CSTTTCCEEEEET------TTSHHHHHHHHHHGGGTCEEEEEECC
T ss_pred cccCCCCEEEEEC------CCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 3445567877663 33456677889999999999998753
No 353
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Probab=45.82 E-value=79 Score=28.42 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=23.4
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
.|+.+|+. |..-.-..+++.|.++|++|.+....
T Consensus 5 ~k~vlVTG-----as~GIG~aia~~L~~~G~~V~~~~r~ 38 (324)
T 3u9l_A 5 KKIILITG-----ASSGFGRLTAEALAGAGHRVYASMRD 38 (324)
T ss_dssp CCEEEESS-----CSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEEC-----CCcHHHHHHHHHHHHCCCEEEEecCc
Confidence 35555552 22345668899999999999887643
No 354
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=45.68 E-value=48 Score=27.53 Aligned_cols=103 Identities=10% Similarity=0.067 Sum_probs=60.9
Q ss_pred EEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHh--c-CCCE
Q 012132 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--F-QLPV 385 (470)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma--~-G~Pv 385 (470)
++|+.+.. .....++...+..|. .|.......+....+. ..|++++|. .-|+.+++.+. . .+||
T Consensus 3 ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~dlvilp~-----~~g~~~~~~lr~~~~~~~i 71 (223)
T 2hqr_A 3 VLLIEKNS----VLGGEIEKGLNVKGF--MADVTESLEDGEYLMDIRNYDLVMVSD-----KNALSFVSRIKEKHSSIVV 71 (223)
T ss_dssp EEEECSCH----HHHHHHHHHHGGGTC--CEEEESSHHHHHHHHTTSCCSEEEECC-----TTHHHHHHHHHHHCTTSEE
T ss_pred EEEEcCCH----HHHHHHHHHHHHCCc--EEEEECCHHHHHHHHhcCCCCEEEeCC-----CCHHHHHHHHHhCCCCCcE
Confidence 45555541 355666666666554 3443333334444443 358888443 33555665553 3 6777
Q ss_pred EecC-CCC---cceeeecCceeeeecCC-CCChHHHHHHHHHHHhC
Q 012132 386 LGTA-AGG---TTEIVVNGTTGLLHPVG-KEGITPLAKNIVKLATH 426 (470)
Q Consensus 386 I~s~-~~g---~~e~v~~~~~G~l~~~~-d~~~~~la~~i~~ll~~ 426 (470)
|.-. ... ..+.+..|..|++..|. + .++|..+|..++..
T Consensus 72 i~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~--~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 72 LVSSDNPTSEEEVHAFEQGADDYIAKPYRS--IKALVARIEARLRF 115 (223)
T ss_dssp EEEESSCCHHHHHHHHHHTCSEEEETTCSC--THHHHHHHHHHTSS
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEECCCCC--HHHHHHHHHHHhcc
Confidence 7543 222 23344567889999998 8 99999999988764
No 355
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=45.61 E-value=81 Score=22.60 Aligned_cols=107 Identities=9% Similarity=0.107 Sum_probs=61.2
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHh---cCCC
Q 012132 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQLP 384 (470)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G~P 384 (470)
+++|+.+.. .....++...+..|.. .+.......+....+. ..|++++-..- .+.-|..+++.+. .+.|
T Consensus 4 ~ilivdd~~----~~~~~l~~~l~~~g~~-vv~~~~~~~~a~~~~~~~~~dlil~D~~l-~~~~g~~~~~~l~~~~~~~~ 77 (120)
T 1tmy_A 4 RVLIVDDAA----FMRMMLKDIITKAGYE-VAGEATNGREAVEKYKELKPDIVTMDITM-PEMNGIDAIKEIMKIDPNAK 77 (120)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHCCSEEEEECSC-GGGCHHHHHHHHHHHCTTCC
T ss_pred eEEEEcCcH----HHHHHHHHHHhhcCcE-EEEEECCHHHHHHHHHhcCCCEEEEeCCC-CCCcHHHHHHHHHhhCCCCe
Confidence 566776642 3566677777765542 1222232233333333 35887764331 2334566666553 4677
Q ss_pred EEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHH
Q 012132 385 VLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 424 (470)
Q Consensus 385 vI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 424 (470)
+|... .+. ..+....|..+++..|-+ .+++.+++.+++
T Consensus 78 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~ 119 (120)
T 1tmy_A 78 IIVCSAMGQQAMVIEAIKAGAKDFIVKPFQ--PSRVVEALNKVS 119 (120)
T ss_dssp EEEEECTTCHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHC
T ss_pred EEEEeCCCCHHHHHHHHHhCcceeEeCCCC--HHHHHHHHHHHh
Confidence 77543 222 233344577889999988 999999887764
No 356
>4i8i_A Hypothetical protein; 5-stranded beta sheet flanked by 8 helices fold, structural joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides uniformis}
Probab=45.52 E-value=20 Score=31.57 Aligned_cols=83 Identities=16% Similarity=0.077 Sum_probs=43.7
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC-CCCCchhHHHhhhhhhh--------hcceeeE-ecCChh
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ-KPSEEDEVIYSLEHKMW--------DRGVQVI-SAKGQE 143 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~ 143 (470)
.||||+|.+++.....+.++.+|++ +.|+++.+-... ++............... ..|.... .....+
T Consensus 10 ~~rVL~IGNS~t~n~~p~~l~~la~---a~g~~~~v~~~~igG~~L~~H~~~~~~~~~~~~y~k~~~~g~~~~~~~~~~~ 86 (271)
T 4i8i_A 10 TIKVLAIGNSFSQDAVEQYLHELGE---AEGITMIIGNMFIGGCSLERHVQNIRNNAPAYAYRKVEKDGEKTETRSMTIE 86 (271)
T ss_dssp EEEEEEEESHHHHHHHSSSHHHHHH---TTTCEEEEEEEECTTCCHHHHHHHHHTTCCCEEEEEECTTSCEEEEEEECHH
T ss_pred CeEEEEECCCCCcCcHHHHHHHHHH---hcCCceEEEEEecCCccHHHHHhccccccccccccccccCCccccccchhHH
Confidence 5899999999873333455555555 358887655422 22222211111111000 1121111 123456
Q ss_pred hHHhhcCCcEEEEccc
Q 012132 144 TINTALKADLIVLNTA 159 (470)
Q Consensus 144 ~~~~~~~~DiV~~~~~ 159 (470)
..+...++|+|+++..
T Consensus 87 ~~L~~~~wD~VilQe~ 102 (271)
T 4i8i_A 87 KALADEKWDYISVQQA 102 (271)
T ss_dssp HHHHHSCCSEEEECCC
T ss_pred HHhhcCCCCEEEeCCC
Confidence 7778899999999863
No 357
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=45.50 E-value=32 Score=28.92 Aligned_cols=33 Identities=27% Similarity=0.161 Sum_probs=23.3
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
++|||+++.. | ..-..+++.|.+.||+|.++..
T Consensus 27 ~~~~I~iiG~-----G--~~G~~la~~l~~~g~~V~~~~r 59 (215)
T 2vns_A 27 EAPKVGILGS-----G--DFARSLATRLVGSGFKVVVGSR 59 (215)
T ss_dssp --CCEEEECC-----S--HHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCEEEEEcc-----C--HHHHHHHHHHHHCCCEEEEEeC
Confidence 3578998852 2 4556778888899999988753
No 358
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=45.38 E-value=36 Score=29.72 Aligned_cols=44 Identities=20% Similarity=0.319 Sum_probs=32.7
Q ss_pred ccccccEEEEEeeccCC-CchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 70 SFMKSKLVLLVSHELSL-SGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 70 ~~~~~~kIl~v~~~~~~-~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
..|+.||-.||+...-- -|-...+..+...|+.+|+.|+++-.+
T Consensus 18 ~~~~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~D 62 (295)
T 2vo1_A 18 LYFQSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKID 62 (295)
T ss_dssp ---CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cccccceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecc
Confidence 45778898888875433 334688999999999999999998744
No 359
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=45.37 E-value=21 Score=33.21 Aligned_cols=42 Identities=14% Similarity=-0.058 Sum_probs=28.1
Q ss_pred ccccEEEEEeeccCCC-ch-hHHHHHHHHHH-HhCCceEEEEecC
Q 012132 72 MKSKLVLLVSHELSLS-GG-PLLLMELAFLL-RGVGTKVNWITIQ 113 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~-G~-~~~~~~l~~~L-~~~G~~V~v~~~~ 113 (470)
|++|||+++....+.- .. -....+++++| .+.||+|..+...
T Consensus 1 m~k~~v~vl~gG~s~E~~vSl~s~~~v~~al~~~~g~~v~~i~~~ 45 (377)
T 1ehi_A 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIA 45 (377)
T ss_dssp --CEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHSSEEEEEEEEC
T ss_pred CCCcEEEEEeCCCCCCcceeHHHHHHHHHHhCcccCcEEEEEEEc
Confidence 5578999998532210 00 02468889999 9999999998744
No 360
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=45.30 E-value=30 Score=28.42 Aligned_cols=33 Identities=30% Similarity=0.366 Sum_probs=23.6
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
++++|+++..+. .....+...|...|++|...+
T Consensus 12 m~~~iLivdd~~------~~~~~l~~~L~~~g~~v~~~~ 44 (205)
T 1s8n_A 12 VPRRVLIAEDEA------LIRMDLAEMLREEGYEIVGEA 44 (205)
T ss_dssp CCCEEEEECSSH------HHHHHHHHHHHHTTCEEEEEE
T ss_pred CCccEEEEECCH------HHHHHHHHHHHHCCCEEEEEe
Confidence 457999998654 456667777888899986333
No 361
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=45.25 E-value=1.2e+02 Score=24.54 Aligned_cols=109 Identities=17% Similarity=0.116 Sum_probs=65.6
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHh---cCC
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQL 383 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G~ 383 (470)
.+++|+.+.. .....++...+..|. .|.......+....+. ..|++++--. -.+.-|+.+++.+. .++
T Consensus 5 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvl~D~~-lp~~~g~~~~~~l~~~~~~~ 77 (208)
T 1yio_A 5 PTVFVVDDDM----SVREGLRNLLRSAGF--EVETFDCASTFLEHRRPEQHGCLVLDMR-MPGMSGIELQEQLTAISDGI 77 (208)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHCCTTSCEEEEEESC-CSSSCHHHHHHHHHHTTCCC
T ss_pred CEEEEEcCCH----HHHHHHHHHHHhCCc--eEEEcCCHHHHHHhhhccCCCEEEEeCC-CCCCCHHHHHHHHHhcCCCC
Confidence 4677777652 356667777776553 3443332233333332 2477775433 13445666776654 467
Q ss_pred CEEec-CCC---CcceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 384 PVLGT-AAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 384 PvI~s-~~~---g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
|+|.- ... ...+.+..|..|++..|.+ .++|..+|..++..
T Consensus 78 ~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~--~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 78 PIVFITAHGDIPMTVRAMKAGAIEFLPKPFE--EQALLDAIEQGLQL 122 (208)
T ss_dssp CEEEEESCTTSCCCHHHHHTTEEEEEESSCC--HHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHCCCcEEEeCCCC--HHHHHHHHHHHHhh
Confidence 87754 222 2334445677899999988 99999999988764
No 362
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=45.22 E-value=27 Score=29.90 Aligned_cols=34 Identities=24% Similarity=0.132 Sum_probs=25.1
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEE
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWI 110 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~ 110 (470)
.+++++||++..+. .....+...|...|++|...
T Consensus 20 ~~~~~~ILivdd~~------~~~~~l~~~L~~~g~~v~~~ 53 (250)
T 3r0j_A 20 TTPEARVLVVDDEA------NIVELLSVSLKFQGFEVYTA 53 (250)
T ss_dssp CCSSCEEEEECSCH------HHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEEECCH------HHHHHHHHHHHHCCCEEEEE
Confidence 34568999998753 45666777888889998754
No 363
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=45.16 E-value=31 Score=29.73 Aligned_cols=37 Identities=16% Similarity=0.020 Sum_probs=27.5
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (470)
||||+...+... +.-+..|+++|++.| +|.|+++...
T Consensus 1 M~ILlTNDDGi~---apGi~aL~~~l~~~g-~V~VVAP~~~ 37 (244)
T 2e6c_A 1 MRILVTNDDGIY---SPGLWALAEAASQFG-EVFVAAPDTE 37 (244)
T ss_dssp CEEEEECSSCTT---CHHHHHHHHHHTTTS-EEEEEEECSS
T ss_pred CeEEEEcCCCCC---cHhHHHHHHHHHhCC-CEEEEecCCC
Confidence 688877764322 356888999999988 9999986544
No 364
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=45.15 E-value=1.5e+02 Score=25.70 Aligned_cols=226 Identities=6% Similarity=-0.044 Sum_probs=104.7
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
++++|.++.+.....--......+.+++.+.|+++.++......... ... . . ......++|
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~-~~~-~----------------i-~~l~~~~vd 63 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQE-QIT-V----------------L-EQAIAKNPA 63 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHH-HHH-H----------------H-HHHHHHCCS
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHH-HHH-H----------------H-HHHHHhCCC
Confidence 35789998876533222456667777888889999886533222111 000 0 0 111235789
Q ss_pred EEEEcccchh---hhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhhccCC
Q 012132 153 LIVLNTAVAG---KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKM 229 (470)
Q Consensus 153 iV~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 229 (470)
.|++...... ..+..+....+ |++......... .....+..+.........+.+.+.++ ..
T Consensus 64 giIi~~~~~~~~~~~~~~~~~~~i-----PvV~~~~~~~~~----------~~~~~V~~d~~~~g~~~~~~l~~~~~-g~ 127 (305)
T 3g1w_A 64 GIAISAIDPVELTDTINKAVDAGI-----PIVLFDSGAPDS----------HAHSFLGTNNYNAGMNAAYKMAELLD-GE 127 (305)
T ss_dssp EEEECCSSTTTTHHHHHHHHHTTC-----CEEEESSCCTTS----------CCSCEEECCHHHHHHHHHHHHHHHTT-TC
T ss_pred EEEEcCCCHHHHHHHHHHHHHCCC-----cEEEECCCCCCC----------ceeEEECcCHHHHHHHHHHHHHHHhC-CC
Confidence 8887643322 22233233333 444432221100 01223333333333333444443322 23
Q ss_pred CceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCce
Q 012132 230 PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSV 309 (470)
Q Consensus 230 ~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~ 309 (470)
.++.++. |.+.... .......++.+++ .+++. .......+.. ..+...+++.++.+ ++|+.
T Consensus 128 ~~i~~i~-~~~~~~~-----~~R~~gf~~~l~~-~~~~~-~~~~~~~~~~----~~~~~~~~~~~~l~-------~~~~~ 188 (305)
T 3g1w_A 128 GEVAVIT-LPNQLNH-----QERTTGFKETLEA-EFPAI-EVIAVEDGRG----DSLHSRRVAHQLLE-------DYPNL 188 (305)
T ss_dssp EEEEEEE-CTTCHHH-----HHHHHHHHHHHHH-HCTTE-EEEEEEECTT----CHHHHHHHHHHHHH-------HCTTE
T ss_pred cEEEEEe-CCCcccH-----HHHHHHHHHHHHh-hCCCC-EEEEEecCCC----CHHHHHHHHHHHHH-------hCCCc
Confidence 4566665 3221110 0001111233332 23321 1222233332 34445555555543 34778
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCH--HHHHHhc
Q 012132 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTV--APYLAAI 357 (470)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~--~~~~~~a 357 (470)
..+++.++ .....+-+.+++.|+.+.|.+.|+.... ...+..-
T Consensus 189 ~ai~~~~d-----~~a~g~~~al~~~g~~~di~vig~d~~~~~~~~~~~~ 233 (305)
T 3g1w_A 189 AGIFATEA-----NGGVGVGDAVRLESRAGEIQIISFDTDKGTLDLVDEG 233 (305)
T ss_dssp EEEEESSH-----HHHHHHHHHHHHTTCTTTSEEEEESCCHHHHHHHHTT
T ss_pred eEEEECCC-----cchhhHHHHHHhcCCCCCeEEEEeCCCHHHHHHHHcC
Confidence 88887765 3445556667788887778899975332 4445433
No 365
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=45.11 E-value=1.4e+02 Score=25.30 Aligned_cols=40 Identities=10% Similarity=0.043 Sum_probs=27.4
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
..+|.++.+.....--......+.+.+.+.|+++.++...
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 41 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASSD 41 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4578888876432112456666777888899999988754
No 366
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=45.05 E-value=37 Score=26.93 Aligned_cols=39 Identities=8% Similarity=-0.020 Sum_probs=29.5
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
.+||+++..+. .|..+..+..+++.|.+.|++|.++...
T Consensus 4 ~~kv~IvY~S~-~GnT~~iA~~ia~~l~~~g~~v~~~~~~ 42 (159)
T 3fni_A 4 ETSIGVFYVSE-YGYSDRLAQAIINGITKTGVGVDVVDLG 42 (159)
T ss_dssp CCEEEEEECTT-STTHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEEEECC-ChHHHHHHHHHHHHHHHCCCeEEEEECc
Confidence 35787776332 3445899999999999999999988754
No 367
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=45.04 E-value=50 Score=30.16 Aligned_cols=69 Identities=9% Similarity=0.064 Sum_probs=47.7
Q ss_pred CCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhcCC
Q 012132 306 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQL 383 (470)
Q Consensus 306 ~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~ 383 (470)
.+++.++-+-+. ..+..++.+++++++ ...++.++++ ..|+++..+. ...-.-.+.+|+..|+
T Consensus 27 ~~~~~lvav~d~------~~~~~~~~~~~~g~~-------~~~~~~~~l~~~~~D~V~i~tp--~~~h~~~~~~al~~gk 91 (354)
T 3db2_A 27 SEKLKLVTCYSR------TEDKREKFGKRYNCA-------GDATMEALLAREDVEMVIITVP--NDKHAEVIEQCARSGK 91 (354)
T ss_dssp CSSEEEEEEECS------SHHHHHHHHHHHTCC-------CCSSHHHHHHCSSCCEEEECSC--TTSHHHHHHHHHHTTC
T ss_pred CCCcEEEEEECC------CHHHHHHHHHHcCCC-------CcCCHHHHhcCCCCCEEEEeCC--hHHHHHHHHHHHHcCC
Confidence 378888755553 345566777777653 1367888884 5899888776 4444455678999999
Q ss_pred CEEecC
Q 012132 384 PVLGTA 389 (470)
Q Consensus 384 PvI~s~ 389 (470)
+|++-.
T Consensus 92 ~vl~EK 97 (354)
T 3db2_A 92 HIYVEK 97 (354)
T ss_dssp EEEEES
T ss_pred EEEEcc
Confidence 999754
No 368
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=44.96 E-value=71 Score=30.01 Aligned_cols=71 Identities=7% Similarity=-0.068 Sum_probs=48.5
Q ss_pred CceEEEE-EeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh-------cCEEEEccCCcccccchHHHHH
Q 012132 307 PSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA-------IDVLVQNSQAWGECFGRITIEA 378 (470)
Q Consensus 307 ~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~-------aDv~v~pS~~~~E~~g~~~lEA 378 (470)
+++.++- +-+. ..+..++.++++|++.. ....++.++++. .|+++..+- ...-.-.+.+|
T Consensus 63 ~~~~lva~v~d~------~~~~a~~~a~~~g~~~~----~~~~~~~~ll~~~~~~~~~vD~V~I~tp--~~~H~~~~~~a 130 (417)
T 3v5n_A 63 DHYELVAGALSS------TPEKAEASGRELGLDPS----RVYSDFKEMAIREAKLKNGIEAVAIVTP--NHVHYAAAKEF 130 (417)
T ss_dssp SCEEEEEEECCS------SHHHHHHHHHHHTCCGG----GBCSCHHHHHHHHHHCTTCCSEEEECSC--TTSHHHHHHHH
T ss_pred CCcEEEEEEeCC------CHHHHHHHHHHcCCCcc----cccCCHHHHHhcccccCCCCcEEEECCC--cHHHHHHHHHH
Confidence 6677763 4443 34566778888876421 112678888887 899988776 44445567789
Q ss_pred HhcCCCEEecC
Q 012132 379 MAFQLPVLGTA 389 (470)
Q Consensus 379 ma~G~PvI~s~ 389 (470)
+..|++|++=.
T Consensus 131 l~aGkhVl~EK 141 (417)
T 3v5n_A 131 LKRGIHVICDK 141 (417)
T ss_dssp HTTTCEEEEES
T ss_pred HhCCCeEEEEC
Confidence 99999999743
No 369
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=44.92 E-value=9.5 Score=31.68 Aligned_cols=41 Identities=12% Similarity=-0.007 Sum_probs=24.8
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEE-EEecC
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN-WITIQ 113 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~-v~~~~ 113 (470)
++|||+++..+...++....+.+.+..+.+.|++|. ++-..
T Consensus 3 ~~mkil~I~GS~r~~s~t~~l~~~~~~~~~~g~~v~~~idL~ 44 (193)
T 3svl_A 3 EKLQVVTLLGSLRKGSFNGMVARTLPKIAPASMEVNALPSIA 44 (193)
T ss_dssp -CEEEEEEECCCSTTCHHHHHHHHGGGTSCTTEEEEECCCST
T ss_pred CCCEEEEEEccCCCCCHHHHHHHHHHHHccCCCEEEEEEeHH
Confidence 468999999877666543333333333334689998 65533
No 370
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=44.80 E-value=58 Score=29.24 Aligned_cols=69 Identities=10% Similarity=0.002 Sum_probs=45.7
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHH-HhcCEEEEccCCcccccchHHHHHHhcCCCE
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL-AAIDVLVQNSQAWGECFGRITIEAMAFQLPV 385 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~-~~aDv~v~pS~~~~E~~g~~~lEAma~G~Pv 385 (470)
++++++.+-+. ..+..++++++++.. .. ..++.+++ ..+|+++..+. .....-.+.+|+..|++|
T Consensus 24 ~~~~~~~v~d~------~~~~~~~~~~~~~~~---~~---~~~~~~~l~~~~D~V~i~tp--~~~h~~~~~~al~~gk~V 89 (325)
T 2ho3_A 24 GEYQLVAIYSR------KLETAATFASRYQNI---QL---FDQLEVFFKSSFDLVYIASP--NSLHFAQAKAALSAGKHV 89 (325)
T ss_dssp TSEEEEEEECS------SHHHHHHHGGGSSSC---EE---ESCHHHHHTSSCSEEEECSC--GGGHHHHHHHHHHTTCEE
T ss_pred CCeEEEEEEeC------CHHHHHHHHHHcCCC---eE---eCCHHHHhCCCCCEEEEeCC--hHHHHHHHHHHHHcCCcE
Confidence 67887755543 234556666666531 11 25677777 67899998886 444455677899999999
Q ss_pred EecC
Q 012132 386 LGTA 389 (470)
Q Consensus 386 I~s~ 389 (470)
++-.
T Consensus 90 ~~EK 93 (325)
T 2ho3_A 90 ILEK 93 (325)
T ss_dssp EEES
T ss_pred EEec
Confidence 9753
No 371
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=44.56 E-value=50 Score=29.98 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=47.5
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhcCCC
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (470)
+++.++-+-+. ..+..++++++++. .. ..++.++++ .+|+++..+. .....-.+.+|+..|++
T Consensus 27 ~~~~l~av~d~------~~~~~~~~a~~~g~----~~---~~~~~~~l~~~~~D~V~i~tp--~~~h~~~~~~al~~gk~ 91 (344)
T 3euw_A 27 PDLELVVIADP------FIEGAQRLAEANGA----EA---VASPDEVFARDDIDGIVIGSP--TSTHVDLITRAVERGIP 91 (344)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHTTTC----EE---ESSHHHHTTCSCCCEEEECSC--GGGHHHHHHHHHHTTCC
T ss_pred CCcEEEEEECC------CHHHHHHHHHHcCC----ce---eCCHHHHhcCCCCCEEEEeCC--chhhHHHHHHHHHcCCc
Confidence 78888755553 34556677776652 11 267788888 7899998876 44445567789999999
Q ss_pred EEecC
Q 012132 385 VLGTA 389 (470)
Q Consensus 385 vI~s~ 389 (470)
|++-.
T Consensus 92 v~~EK 96 (344)
T 3euw_A 92 ALCEK 96 (344)
T ss_dssp EEECS
T ss_pred EEEEC
Confidence 99754
No 372
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=44.53 E-value=34 Score=30.33 Aligned_cols=88 Identities=17% Similarity=0.071 Sum_probs=49.3
Q ss_pred HHHHHhcCEEEEccCCcccccchHHHHHHhc-CCCEEecCCCCcceeee-----c-----C-------ceeeeecCCCCC
Q 012132 351 APYLAAIDVLVQNSQAWGECFGRITIEAMAF-QLPVLGTAAGGTTEIVV-----N-----G-------TTGLLHPVGKEG 412 (470)
Q Consensus 351 ~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~-G~PvI~s~~~g~~e~v~-----~-----~-------~~G~l~~~~d~~ 412 (470)
..-++.||++|..... .|+|=-.++++... ++.+|.. ..|+. +.. + + .--+..++.+
T Consensus 55 ~~~l~~Adlvv~~G~~-lE~w~~k~~~~~~~~~~~~v~~-~~~i~-l~~~~~~~~~~~~~~~~h~~~~dPHvWldp~~-- 129 (286)
T 3gi1_A 55 VAAIYDADLFVYHSHT-LEAWARDLDPNLKKSKVDVFEA-SKPLT-LDRVKGLEDMEVTQGIDPATLYDPHTWTDPVL-- 129 (286)
T ss_dssp HHHHHTSSEEEESCTT-TSGGGTTCCTTTTTCCCEEEET-TTTSC-CCBCC---------------CBCCCGGGSHHH--
T ss_pred HHHHHhCCEEEEcCCC-chHHHHHHHHhccCCCcEEEEC-CCCcc-ccccCCcccccccccccCCCCCCCceecCHHH--
Confidence 4567889999987763 67766566665533 3344432 12222 100 0 0 1112333333
Q ss_pred hHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHH
Q 012132 413 ITPLAKNIVKLAT--HVERRLTMGKRGYERVKE 443 (470)
Q Consensus 413 ~~~la~~i~~ll~--~~~~~~~~~~~a~~~~~~ 443 (470)
...+++.|.+.|. ||+-.....+|+.++..+
T Consensus 130 ~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~ 162 (286)
T 3gi1_A 130 AGEEAVNIAKELGRLDPKHKDSYTKNAKAFKKE 162 (286)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 5667777777665 787777777777776644
No 373
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=44.53 E-value=38 Score=27.90 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=26.5
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
+||++..+.. .+.....++++.|.+.|++|+++...
T Consensus 2 k~IllgvTGs---~aa~k~~~l~~~L~~~g~~V~vv~T~ 37 (189)
T 2ejb_A 2 QKIALCITGA---SGVIYGIKLLQVLEELDFSVDLVISR 37 (189)
T ss_dssp CEEEEEECSS---TTHHHHHHHHHHHHHTTCEEEEEECH
T ss_pred CEEEEEEECH---HHHHHHHHHHHHHHHCCCEEEEEECh
Confidence 5677666421 12467899999999999999998754
No 374
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=44.51 E-value=28 Score=29.15 Aligned_cols=82 Identities=12% Similarity=0.086 Sum_probs=53.3
Q ss_pred ceEEEEEeCCC--CcChHHHHHHHHHHHhcCCCCcEEEec----ccCCHHHHHHhcCEEEEccCC--------cccccch
Q 012132 308 SVHAVIIGSDM--NAQTKFESELRNYVMQKKIQDRVHFVN----KTLTVAPYLAAIDVLVQNSQA--------WGECFGR 373 (470)
Q Consensus 308 ~~~l~ivG~g~--~~~~~~~~~l~~~~~~~~l~~~V~~~g----~~~~~~~~~~~aDv~v~pS~~--------~~E~~g~ 373 (470)
..++.++..+. +...++...+++..+++|. .+..+. ..++..+.+..+|.+++|.-+ ..-++--
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~--~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~~~l~~~L~~~gl~~ 104 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGL--LVEELDIATESLGEITTKLRKNDFIYVTGGNTFFLLQELKRTGADK 104 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTC--EEEECCTTTSCHHHHHHHHHHSSEEEECCSCHHHHHHHHHHHTHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCC--eEEEEEecCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHHCChHH
Confidence 45777776332 2223477788888888887 366663 335666889999999998631 0011223
Q ss_pred HHHHHHhcCCCEEecCCC
Q 012132 374 ITIEAMAFQLPVLGTAAG 391 (470)
Q Consensus 374 ~~lEAma~G~PvI~s~~~ 391 (470)
.+-|+...|+|++.+..|
T Consensus 105 ~l~~~~~~G~p~~G~sAG 122 (206)
T 3l4e_A 105 LILEEIAAGKLYIGESAG 122 (206)
T ss_dssp HHHHHHHTTCEEEEETHH
T ss_pred HHHHHHHcCCeEEEECHH
Confidence 466888899999987544
No 375
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=44.48 E-value=83 Score=25.55 Aligned_cols=72 Identities=24% Similarity=0.284 Sum_probs=43.0
Q ss_pred cccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCC
Q 012132 73 KSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (470)
|++||+++... |. +.-+......|++.|++|.+++...+..- ....|+.+......... ....+
T Consensus 4 m~kkv~ill~~----g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v----------~~~~g~~i~~d~~l~~~-~~~~~ 68 (190)
T 4e08_A 4 MSKSALVILAP----GAEEMEFIIAADVLRRAGIKVTVAGLNGGEAV----------KCSRDVQILPDTSLAQV-ASDKF 68 (190)
T ss_dssp CCCEEEEEECT----TCCHHHHHHHHHHHHHTTCEEEEEESSSSSCE----------ECTTSCEEECSEETGGG-TTCCC
T ss_pred CCcEEEEEECC----CchHHHHHHHHHHHHHCCCEEEEEECCCCcce----------ecCCCcEEECCCCHHHC-CcccC
Confidence 45788888752 22 34455667888889999999997652110 11245555443333222 12468
Q ss_pred cEEEEccc
Q 012132 152 DLIVLNTA 159 (470)
Q Consensus 152 DiV~~~~~ 159 (470)
|+|++-..
T Consensus 69 D~livpGG 76 (190)
T 4e08_A 69 DVVVLPGG 76 (190)
T ss_dssp SEEEECCC
T ss_pred CEEEECCC
Confidence 99998754
No 376
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=44.47 E-value=27 Score=29.23 Aligned_cols=70 Identities=14% Similarity=-0.029 Sum_probs=39.5
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhC-CceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcC
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (470)
|+|+||+++.....- +.-+...+..|.+. |++|.+++...+ .. ...|+.+......... ...
T Consensus 1 M~m~kV~ill~~g~~---~~E~~~~~~~l~~~~~~~v~~vs~~~~-V~-----------~~~G~~v~~d~~l~~~--~~~ 63 (206)
T 3f5d_A 1 MSLKKALFLILDQYA---DWEGVYLASALNQREDWSVHTVSLDPI-VS-----------SIGGFKTSVDYIIGLE--PAN 63 (206)
T ss_dssp --CEEEEEECCSSBC---TTTSHHHHHHHHTSTTEEEEEEESSSE-EE-----------BTTSCEEECSEETTSS--CSC
T ss_pred CCccEEEEEEcCCCc---HHHHHHHHHHHhccCCeEEEEEECCCC-EE-----------ecCCcEEecCcChhhC--CcC
Confidence 456789888754211 12234556677777 999999986543 11 1245555443333322 246
Q ss_pred CcEEEEcc
Q 012132 151 ADLIVLNT 158 (470)
Q Consensus 151 ~DiV~~~~ 158 (470)
+|+|++-.
T Consensus 64 ~D~livpG 71 (206)
T 3f5d_A 64 FNLLVMIG 71 (206)
T ss_dssp CSEEEECC
T ss_pred CCEEEEcC
Confidence 89888864
No 377
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=44.37 E-value=26 Score=29.36 Aligned_cols=40 Identities=23% Similarity=0.096 Sum_probs=26.6
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHh-CCceEEEEecCC
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRG-VGTKVNWITIQK 114 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~-~G~~V~v~~~~~ 114 (470)
++++||++..+.. .+.....++++.|.+ .|++|+++....
T Consensus 17 l~~k~IllgvTGs---iaa~k~~~lv~~L~~~~g~~V~vv~T~~ 57 (206)
T 1qzu_A 17 ERKFHVLVGVTGS---VAALKLPLLVSKLLDIPGLEVAVVTTER 57 (206)
T ss_dssp CSSEEEEEEECSS---GGGGTHHHHHHHHC---CEEEEEEECTG
T ss_pred cCCCEEEEEEeCh---HHHHHHHHHHHHHhcccCCEEEEEECHh
Confidence 4457787776521 123556899999998 899999998543
No 378
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=44.18 E-value=53 Score=24.78 Aligned_cols=34 Identities=18% Similarity=0.089 Sum_probs=23.8
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
|++++||++.... .....+...|.+.|+++.+.+
T Consensus 3 ~~~~~ILivdd~~------~~~~~l~~~L~~~~~~~~v~~ 36 (144)
T 3kht_A 3 LRSKRVLVVEDNP------DDIALIRRVLDRKDIHCQLEF 36 (144)
T ss_dssp --CEEEEEECCCH------HHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEEEeCCH------HHHHHHHHHHHhcCCCeeEEE
Confidence 4567899998643 466778888889999855544
No 379
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=44.08 E-value=36 Score=29.48 Aligned_cols=39 Identities=21% Similarity=0.166 Sum_probs=31.8
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
++|+.++|+...+-.|=.....-|++.|+++|+.|..+-
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fK 62 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCK 62 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 457888888766556657788999999999999999885
No 380
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=44.07 E-value=63 Score=29.17 Aligned_cols=77 Identities=14% Similarity=0.111 Sum_probs=42.2
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhc-ceeeEecCChhhHHhhcC
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISAKGQETINTALK 150 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 150 (470)
|+++||.+|... ... ...++..|...|+++.-++.......... .... +... ......+....+
T Consensus 2 M~~~rvgiiG~G----~~~--~~~~~~~l~~~~~~lvav~d~~~~~~~~~-------a~~~~~~~~--~~~~~~ll~~~~ 66 (336)
T 2p2s_A 2 MKKIRFAAIGLA----HNH--IYDMCQQLIDAGAELAGVFESDSDNRAKF-------TSLFPSVPF--AASAEQLITDAS 66 (336)
T ss_dssp --CCEEEEECCS----STH--HHHHHHHHHHTTCEEEEEECSCTTSCHHH-------HHHSTTCCB--CSCHHHHHTCTT
T ss_pred CCccEEEEECCC----hHH--HHHhhhhhcCCCcEEEEEeCCCHHHHHHH-------HHhcCCCcc--cCCHHHHhhCCC
Confidence 677899999842 111 22345556667888876664433322111 1112 2222 234556666678
Q ss_pred CcEEEEcccchhh
Q 012132 151 ADLIVLNTAVAGK 163 (470)
Q Consensus 151 ~DiV~~~~~~~~~ 163 (470)
+|+|++.++...+
T Consensus 67 ~D~V~i~tp~~~h 79 (336)
T 2p2s_A 67 IDLIACAVIPCDR 79 (336)
T ss_dssp CCEEEECSCGGGH
T ss_pred CCEEEEeCChhhH
Confidence 9999998876544
No 381
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=43.94 E-value=34 Score=29.54 Aligned_cols=38 Identities=18% Similarity=0.076 Sum_probs=27.9
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (470)
||||+...+... +.-+..|+++|++.| +|.|+++....
T Consensus 1 M~ILlTNDDGi~---apGi~aL~~~l~~~g-~V~VVAP~~~~ 38 (247)
T 1j9j_A 1 MRILVTNDDGIQ---SKGIIVLAELLSEEH-EVFVVAPDKER 38 (247)
T ss_dssp CEEEEECSSCTT---CHHHHHHHHHHTTTS-EEEEEEESSCC
T ss_pred CeEEEEcCCCCC---cHhHHHHHHHHHhCC-CEEEEecCCCC
Confidence 688877764321 355888999999988 99999866543
No 382
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=43.78 E-value=39 Score=30.30 Aligned_cols=67 Identities=9% Similarity=-0.062 Sum_probs=41.2
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEE
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (470)
+++.++-+-+.. .+..++++++++.+ ..++...+-..+|+++..+. .....-.+.+|+..|++|+
T Consensus 29 ~~~~lvav~d~~------~~~~~~~~~~~g~~-------~~~~~~~l~~~~D~V~i~tp--~~~h~~~~~~al~~G~~v~ 93 (319)
T 1tlt_A 29 SDWTLQGAWSPT------RAKALPICESWRIP-------YADSLSSLAASCDAVFVHSS--TASHFDVVSTLLNAGVHVC 93 (319)
T ss_dssp SSEEEEEEECSS------CTTHHHHHHHHTCC-------BCSSHHHHHTTCSEEEECSC--TTHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEEEECCC------HHHHHHHHHHcCCC-------ccCcHHHhhcCCCEEEEeCC--chhHHHHHHHHHHcCCeEE
Confidence 778887444432 12334555666643 12344444457899998876 4444456678999999999
Q ss_pred ec
Q 012132 387 GT 388 (470)
Q Consensus 387 ~s 388 (470)
+-
T Consensus 94 ~e 95 (319)
T 1tlt_A 94 VD 95 (319)
T ss_dssp EE
T ss_pred Ee
Confidence 75
No 383
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=43.74 E-value=22 Score=31.80 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=23.8
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
++|||+++.. | ..-..++..|.+.||+|+++..
T Consensus 2 ~~m~i~iiG~-----G--~~G~~~a~~l~~~g~~V~~~~r 34 (316)
T 2ew2_A 2 NAMKIAIAGA-----G--AMGSRLGIMLHQGGNDVTLIDQ 34 (316)
T ss_dssp --CEEEEECC-----S--HHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCeEEEECc-----C--HHHHHHHHHHHhCCCcEEEEEC
Confidence 4579998863 2 4556678888999999998853
No 384
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=43.52 E-value=2e+02 Score=26.69 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=23.3
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEE
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (470)
.++.+.+..+|+++-.|. .--+.--.++.|+ ..|||
T Consensus 255 ~~L~eav~~ADVlIG~Sa--p~l~t~emVk~Ma-~~pII 290 (388)
T 1vl6_A 255 GDLETALEGADFFIGVSR--GNILKPEWIKKMS-RKPVI 290 (388)
T ss_dssp SCHHHHHTTCSEEEECSC--SSCSCHHHHTTSC-SSCEE
T ss_pred hhHHHHHccCCEEEEeCC--CCccCHHHHHhcC-CCCEE
Confidence 358889999999998775 3334444555555 34444
No 385
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Probab=43.48 E-value=37 Score=31.34 Aligned_cols=82 Identities=12% Similarity=-0.016 Sum_probs=51.1
Q ss_pred CCHHHHHHhcCEEEEc--cCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeee--cCCCCChHHHHHHHHHH
Q 012132 348 LTVAPYLAAIDVLVQN--SQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLH--PVGKEGITPLAKNIVKL 423 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~p--S~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~--~~~d~~~~~la~~i~~l 423 (470)
.+..++++....++.- |. ..+-.-=++.+|+.+|+-.|.-..+.+.+++.. ..++. +-.+ +++|++.|..|
T Consensus 223 ~~~~~~l~~YKFyLafENs~-c~dYvTEK~~~al~~g~VPI~~G~~~~~~~~Pp--~SfI~~~dF~s--~~~La~yL~~L 297 (371)
T 2nzw_A 223 KNKNEFLSQYKFNLCFENTQ-GYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNP--KSFVNVHDFKN--FDEAIDYIKYL 297 (371)
T ss_dssp SCHHHHHTTEEEEEEECSSC-CTTCCCTHHHHHHHTTCEEEEESCTTGGGTSCG--GGSEEGGGSSS--HHHHHHHHHHH
T ss_pred ccHHHHHhcCcEEEEEeccC-CCCcccHHHHHHHhCCeEEEEECCCchhhhCCC--CceEEcccCCC--HHHHHHHHHHH
Confidence 4555666666655542 22 112223467799999976666554556666643 33432 3334 99999999999
Q ss_pred HhCHHHHHHHH
Q 012132 424 ATHVERRLTMG 434 (470)
Q Consensus 424 l~~~~~~~~~~ 434 (470)
-+|++++.++-
T Consensus 298 ~~n~~~Y~~y~ 308 (371)
T 2nzw_A 298 HTHKNAYLDML 308 (371)
T ss_dssp HTCHHHHHHHH
T ss_pred hcCHHHHHHHH
Confidence 99988776543
No 386
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=43.47 E-value=51 Score=29.78 Aligned_cols=88 Identities=9% Similarity=0.012 Sum_probs=54.9
Q ss_pred HHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceee-e----c--CceeeeecCCCCChHHHHHHHHHH
Q 012132 351 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIV-V----N--GTTGLLHPVGKEGITPLAKNIVKL 423 (470)
Q Consensus 351 ~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v-~----~--~~~G~l~~~~d~~~~~la~~i~~l 423 (470)
..-++.||++|..... .|+|--.++++.. +.++|....| +.-+- . + ..--+..+|.+ ...+++.|.+.
T Consensus 89 ~~~l~~ADlvv~nG~~-lE~wl~k~~~~~~-~~~~v~~s~g-i~~~~~~~~~~~~~~DPHvWldp~n--~~~~a~~I~~~ 163 (321)
T 1xvl_A 89 IVKAQDADLILYNGMN-LERWFEQFLGNVK-DVPSVVLTEG-IEPIPIADGPYTDKPNPHAWMSPRN--ALVYVENIRQA 163 (321)
T ss_dssp HHHHHTCSEEEECCTT-SSTTHHHHHHTSS-SCCEEETTTT-CCCCBCCSSSSTTSBCCCGGGSHHH--HHHHHHHHHHH
T ss_pred HHHHhcCCEEEECCCC-hHHHHHHHHHhcC-CCcEEEccCC-cccccccccCCCCCCCCCcCCCHHH--HHHHHHHHHHH
Confidence 3458899999988763 7887777888766 6666654322 21110 0 0 01123444444 66777777777
Q ss_pred Hh--CHHHHHHHHHHHHHHHHH
Q 012132 424 AT--HVERRLTMGKRGYERVKE 443 (470)
Q Consensus 424 l~--~~~~~~~~~~~a~~~~~~ 443 (470)
|. ||+....+.+|+.++..+
T Consensus 164 L~~~DP~~a~~Y~~Na~~~~~~ 185 (321)
T 1xvl_A 164 FVELDPDNAKYYNANAAVYSEQ 185 (321)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHCcccHHHHHHHHHHHHHH
Confidence 76 788777777777776644
No 387
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=43.40 E-value=64 Score=29.28 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=47.5
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhcCCC
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (470)
+++.++-+-+. ..+..++.+++++.. . ..+++.++++ .+|+++..+. .....-.+.+|+..|++
T Consensus 25 ~~~~l~av~d~------~~~~~~~~~~~~~~~-~-----~~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~~gk~ 90 (344)
T 3ezy_A 25 DDAILYAISDV------REDRLREMKEKLGVE-K-----AYKDPHELIEDPNVDAVLVCSS--TNTHSELVIACAKAKKH 90 (344)
T ss_dssp TTEEEEEEECS------CHHHHHHHHHHHTCS-E-----EESSHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEECC------CHHHHHHHHHHhCCC-c-----eeCCHHHHhcCCCCCEEEEcCC--CcchHHHHHHHHhcCCe
Confidence 78888755553 245566777777642 1 1267788888 7899998876 44444556789999999
Q ss_pred EEecC
Q 012132 385 VLGTA 389 (470)
Q Consensus 385 vI~s~ 389 (470)
|++-.
T Consensus 91 v~~EK 95 (344)
T 3ezy_A 91 VFCEK 95 (344)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99754
No 388
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Probab=43.31 E-value=23 Score=32.09 Aligned_cols=37 Identities=19% Similarity=0.098 Sum_probs=25.5
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
.+++|+||+.. |....-..+++.|.+.||+|.++...
T Consensus 24 ~~~~~~vlVtG------atG~iG~~l~~~L~~~g~~V~~~~r~ 60 (343)
T 2b69_A 24 EKDRKRILITG------GAGFVGSHLTDKLMMDGHEVTVVDNF 60 (343)
T ss_dssp ---CCEEEEET------TTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred ccCCCEEEEEc------CccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34567777653 33456778888999999999998754
No 389
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=43.00 E-value=22 Score=32.34 Aligned_cols=34 Identities=9% Similarity=0.098 Sum_probs=21.4
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
+++|+||+.. |....-..+++.|.++|+++.|++
T Consensus 22 ~~~~~vlVtG------atG~iG~~l~~~L~~~g~~~~v~~ 55 (346)
T 4egb_A 22 SNAMNILVTG------GAGFIGSNFVHYMLQSYETYKIIN 55 (346)
T ss_dssp --CEEEEEET------TTSHHHHHHHHHHHHHCTTEEEEE
T ss_pred cCCCeEEEEC------CccHHHHHHHHHHHhhCCCcEEEE
Confidence 4557777653 334667788899999994444444
No 390
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=42.85 E-value=30 Score=26.15 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=23.6
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
.|+|+++.. ...-..+++.|.+.|++|.++..
T Consensus 4 ~m~i~IiG~-------G~iG~~~a~~L~~~g~~v~~~d~ 35 (140)
T 1lss_A 4 GMYIIIAGI-------GRVGYTLAKSLSEKGHDIVLIDI 35 (140)
T ss_dssp -CEEEEECC-------SHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECC-------CHHHHHHHHHHHhCCCeEEEEEC
Confidence 478888742 24566788899999999998864
No 391
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=42.79 E-value=23 Score=32.42 Aligned_cols=33 Identities=21% Similarity=0.025 Sum_probs=23.3
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
|++|||+++.. | ..-..++..|.+.||+|+++.
T Consensus 2 m~~mki~iiG~-----G--~~G~~~a~~L~~~g~~V~~~~ 34 (359)
T 1bg6_A 2 IESKTYAVLGL-----G--NGGHAFAAYLALKGQSVLAWD 34 (359)
T ss_dssp --CCEEEEECC-----S--HHHHHHHHHHHHTTCEEEEEC
T ss_pred CCcCeEEEECC-----C--HHHHHHHHHHHhCCCEEEEEe
Confidence 55689999863 2 344557788888999998875
No 392
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=42.79 E-value=38 Score=25.55 Aligned_cols=108 Identities=7% Similarity=0.048 Sum_probs=62.4
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEE-ecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHH-hcCC
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHF-VNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAM-AFQL 383 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~-~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAm-a~G~ 383 (470)
..+++|+=+.. .....++...++.|.. |.. ...-.+-.++++. .|+.++=-. -.+.-|+.+++.+ ..++
T Consensus 8 ~~rILiVdD~~----~~~~~l~~~L~~~G~~--v~~~a~~g~eAl~~~~~~~~DlvllDi~-mP~~~G~el~~~lr~~~i 80 (123)
T 2lpm_A 8 RLRVLVVEDES----MIAMLIEDTLCELGHE--VAATASRMQEALDIARKGQFDIAIIDVN-LDGEPSYPVADILAERNV 80 (123)
T ss_dssp CCCEEEESSST----TTSHHHHHHHHHHCCC--CCBCSCCHHHHHHHHHHCCSSEEEECSS-SSSCCSHHHHHHHHHTCC
T ss_pred CCEEEEEeCCH----HHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHhCCCCEEEEecC-CCCCCHHHHHHHHHcCCC
Confidence 45677776653 3566777777777753 221 1122333334433 477775332 1333466677665 3578
Q ss_pred CEEec-CCCCcceeeecCceeeeecCCCCChHHHHHHHHHHH
Q 012132 384 PVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 424 (470)
Q Consensus 384 PvI~s-~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 424 (470)
|||.- ..+.......-+..|++..|-+ .++|.++|.+++
T Consensus 81 pvI~lTa~~~~~~~~~~g~~~yl~KP~~--~~~L~~~l~~~~ 120 (123)
T 2lpm_A 81 PFIFATGYGSKGLDTRYSNIPLLTKPFL--DSELEAVLVQIS 120 (123)
T ss_dssp SSCCBCTTCTTSCCSSSCSCSCBCSSSS--HHHHHHHHSTTC
T ss_pred CEEEEecCccHHHHHhCCCCcEEECCCC--HHHHHHHHHHHH
Confidence 98753 3332222223366789999988 999999887664
No 393
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=42.46 E-value=30 Score=30.16 Aligned_cols=34 Identities=6% Similarity=-0.169 Sum_probs=21.2
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
.|+|+++++.-.. .....++...|. .||+|.++.
T Consensus 30 ~m~ill~~~~~~~---~~l~q~l~~~l~-~~h~V~~~~ 63 (260)
T 1zgh_A 30 LMNIIIATTKSWN---IKNAQKFKKENE-SKYNTTIIT 63 (260)
T ss_dssp CEEEEEECCSHHH---HHHHHHHHHHTT-TTEEEEEEC
T ss_pred ceEEEEECChHHH---HHHHHHHHHHhc-ccCceEEEe
Confidence 4789998763211 123444555566 789998884
No 394
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=42.40 E-value=1.4e+02 Score=25.34 Aligned_cols=85 Identities=11% Similarity=0.045 Sum_probs=51.4
Q ss_pred CCceEEEEEeCCCCcChHHHHHHHHHH----HhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHH-h
Q 012132 306 VPSVHAVIIGSDMNAQTKFESELRNYV----MQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM-A 380 (470)
Q Consensus 306 ~~~~~l~ivG~g~~~~~~~~~~l~~~~----~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAm-a 380 (470)
.+++...++|+|..-.++.-++..... ++.+ -|++++-|-+..-+-|...=|.+ +
T Consensus 30 RedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~~~~--------------------pDfvI~isPN~a~PGP~~ARE~l~~ 89 (283)
T 1qv9_A 30 REDVEFRVVGTSVKMDPECVEAAVEMALDIAEDFE--------------------PDFIVYGGPNPAAPGPSKAREMLAD 89 (283)
T ss_dssp CSSEEEEEEECTTCCSHHHHHHHHHHHHHHHHHHC--------------------CSEEEEECSCTTSHHHHHHHHHHHT
T ss_pred cCCceEEEeccCCCCCHHHHHHHHHHhhhhhhhcC--------------------CCEEEEECCCCCCCCchHHHHHHHh
Confidence 478999999999655544433333332 3332 25566555421233345556776 6
Q ss_pred cCCCEEe-cCCCCc--ceeeecCceeeeecCCC
Q 012132 381 FQLPVLG-TAAGGT--TEIVVNGTTGLLHPVGK 410 (470)
Q Consensus 381 ~G~PvI~-s~~~g~--~e~v~~~~~G~l~~~~d 410 (470)
.|+|+|. +|.++. .+-+.+.+.|+++-..|
T Consensus 90 ~~iP~IvI~D~p~~K~kd~l~~~g~GYIivk~D 122 (283)
T 1qv9_A 90 SEYPAVIIGDAPGLKVKDEMEEQGLGYILVKPD 122 (283)
T ss_dssp SSSCEEEEEEGGGGGGHHHHHHTTCEEEEETTS
T ss_pred CCCCEEEEcCCcchhhHHHHHhcCCcEEEEecC
Confidence 8999774 566654 44455677899887766
No 395
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=42.39 E-value=49 Score=31.93 Aligned_cols=76 Identities=13% Similarity=0.122 Sum_probs=42.9
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHh-hcC
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINT-ALK 150 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 150 (470)
|.+|+|.+|.. ...-..++..|.+.||+|.++...... ...+... ...+..+........+.. ..+
T Consensus 2 ~~~~kIgiIGl-------G~MG~~lA~~L~~~G~~V~v~dr~~~~-----~~~l~~~-g~~g~~i~~~~s~~e~v~~l~~ 68 (484)
T 4gwg_A 2 NAQADIALIGL-------AVMGQNLILNMNDHGFVVCAFNRTVSK-----VDDFLAN-EAKGTKVVGAQSLKEMVSKLKK 68 (484)
T ss_dssp -CCBSEEEECC-------SHHHHHHHHHHHHTTCCEEEECSSTHH-----HHHHHHT-TTTTSSCEECSSHHHHHHTBCS
T ss_pred CCCCEEEEECh-------hHHHHHHHHHHHHCCCEEEEEeCCHHH-----HHHHHhc-ccCCCceeccCCHHHHHhhccC
Confidence 35678998863 256778899999999999988533211 1111110 011333333333333333 246
Q ss_pred CcEEEEcccc
Q 012132 151 ADLIVLNTAV 160 (470)
Q Consensus 151 ~DiV~~~~~~ 160 (470)
+|+|++..+.
T Consensus 69 aDvVil~Vp~ 78 (484)
T 4gwg_A 69 PRRIILLVKA 78 (484)
T ss_dssp SCEEEECSCS
T ss_pred CCEEEEecCC
Confidence 9999987655
No 396
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=42.33 E-value=2.1e+02 Score=26.50 Aligned_cols=104 Identities=10% Similarity=-0.062 Sum_probs=62.4
Q ss_pred EEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCc---------ChHHHHHHHHHHHhcCCCCcEEE
Q 012132 273 FAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA---------QTKFESELRNYVMQKKIQDRVHF 343 (470)
Q Consensus 273 i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~---------~~~~~~~l~~~~~~~~l~~~V~~ 343 (470)
++.+|-.+-. ..+.+++.+..+.+ -.+.++..|.-.+. ..+....|.+.+++.|++ +.-
T Consensus 144 ~~Iigpcsve-s~e~a~~~a~~~k~---------aGa~~vk~q~fkprts~~~f~gl~~egl~~L~~~~~~~Gl~--~~t 211 (385)
T 3nvt_A 144 VFVFGPCSVE-SYEQVAAVAESIKA---------KGLKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEYGLG--VIS 211 (385)
T ss_dssp EEEEECSBCC-CHHHHHHHHHHHHH---------TTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCE--EEE
T ss_pred EEEEEeCCcC-CHHHHHHHHHHHHH---------cCCCeEEcccccCCCChHhhcCCCHHHHHHHHHHHHHcCCE--EEE
Confidence 3456665544 77788777777654 34455555542111 114567788888888875 222
Q ss_pred ecc-cCCHHHHHHhcCEEEEccCCcccccchHHH-HHHhcCCCEEecCCC
Q 012132 344 VNK-TLTVAPYLAAIDVLVQNSQAWGECFGRITI-EAMAFQLPVLGTAAG 391 (470)
Q Consensus 344 ~g~-~~~~~~~~~~aDv~v~pS~~~~E~~g~~~l-EAma~G~PvI~s~~~ 391 (470)
..+ ...+..+...+|++=.+|. +..-..++ ++...|+||+.+...
T Consensus 212 e~~d~~~~~~l~~~vd~lkIgs~---~~~n~~LL~~~a~~gkPVilk~G~ 258 (385)
T 3nvt_A 212 EIVTPADIEVALDYVDVIQIGAR---NMQNFELLKAAGRVDKPILLKRGL 258 (385)
T ss_dssp ECCSGGGHHHHTTTCSEEEECGG---GTTCHHHHHHHHTSSSCEEEECCT
T ss_pred ecCCHHHHHHHHhhCCEEEECcc---cccCHHHHHHHHccCCcEEEecCC
Confidence 222 2444444455899999997 33334555 456689999988633
No 397
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=42.11 E-value=33 Score=29.79 Aligned_cols=41 Identities=20% Similarity=0.063 Sum_probs=28.4
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
+++|+.+++.-.-.|-...+.+||..|+++|+.|.++-...
T Consensus 17 ~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~ 57 (262)
T 2ph1_A 17 IKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADF 57 (262)
T ss_dssp CSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34565555433222335889999999999999998886543
No 398
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=42.05 E-value=34 Score=26.51 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=24.1
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
++++||++.... .....+...|.+.|++|..+.
T Consensus 6 ~~~~ILivdd~~------~~~~~l~~~L~~~g~~v~~~~ 38 (154)
T 3gt7_A 6 RAGEILIVEDSP------TQAEHLKHILEETGYQTEHVR 38 (154)
T ss_dssp -CCEEEEECSCH------HHHHHHHHHHHTTTCEEEEES
T ss_pred CCCcEEEEeCCH------HHHHHHHHHHHHCCCEEEEeC
Confidence 357899998643 566777888888899886553
No 399
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=41.96 E-value=27 Score=29.02 Aligned_cols=33 Identities=9% Similarity=-0.044 Sum_probs=24.3
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|||+++. |....-..+++.|.++||+|.+++..
T Consensus 1 MkvlVtG------atG~iG~~l~~~L~~~g~~V~~~~R~ 33 (221)
T 3ew7_A 1 MKIGIIG------ATGRAGSRILEEAKNRGHEVTAIVRN 33 (221)
T ss_dssp CEEEEET------TTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CeEEEEc------CCchhHHHHHHHHHhCCCEEEEEEcC
Confidence 5776653 23456678889999999999998854
No 400
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=41.93 E-value=27 Score=29.30 Aligned_cols=34 Identities=15% Similarity=0.095 Sum_probs=26.0
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
+|+|+++. |....-..+++.|.++||+|.++...
T Consensus 4 m~~ilItG------atG~iG~~l~~~L~~~g~~V~~~~r~ 37 (227)
T 3dhn_A 4 VKKIVLIG------ASGFVGSALLNEALNRGFEVTAVVRH 37 (227)
T ss_dssp CCEEEEET------CCHHHHHHHHHHHHTTTCEEEEECSC
T ss_pred CCEEEEEc------CCchHHHHHHHHHHHCCCEEEEEEcC
Confidence 46777663 33567788899999999999998754
No 401
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=41.89 E-value=40 Score=29.29 Aligned_cols=39 Identities=21% Similarity=0.145 Sum_probs=28.3
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (470)
.||||+...+-.. +.-+..|+++|++.| +|.|+++....
T Consensus 1 ~M~ILlTNDDGi~---apGi~aL~~~L~~~g-~V~VVAP~~~~ 39 (254)
T 2v4n_A 1 SMRILLSNDDGVH---APGIQTLAKALREFA-DVQVVAPDRNR 39 (254)
T ss_dssp CCEEEEECSSCTT---CHHHHHHHHHHTTTS-EEEEEEESSCC
T ss_pred CCeEEEEcCCCCC---CHHHHHHHHHHHhCC-cEEEEeeCCCC
Confidence 3788887765322 356888999998886 99999976543
No 402
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=41.87 E-value=38 Score=29.87 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=28.0
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (470)
||||+...+... +.-+..|+++|++.| +|.|+++....
T Consensus 1 M~ILlTNDDGi~---ApGi~aL~~aL~~~g-~V~VVAP~~~q 38 (280)
T 1l5x_A 1 MKILVTNDDGVH---SPGLRLLYQFALSLG-DVDVVAPESPK 38 (280)
T ss_dssp CEEEEECSSCTT---CHHHHHHHHHHGGGS-EEEEEEESSCT
T ss_pred CeEEEEcCCCCC---cHhHHHHHHHHHhCC-CEEEEecCCCC
Confidence 688877764322 355888999999988 99999866543
No 403
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=41.81 E-value=1.9e+02 Score=25.81 Aligned_cols=140 Identities=14% Similarity=0.099 Sum_probs=75.5
Q ss_pred EEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCc-eEEEEEeCCCCcChHHHHHHHHHHHhcCCC-CcEEEecccCCH
Q 012132 273 FAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS-VHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKTLTV 350 (470)
Q Consensus 273 i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~-~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-~~V~~~g~~~~~ 350 (470)
++.+..-.+.|.++.|++.++ ++|. +.+-..|.|. ...-..+.+.+..|+. ..|-|.|..+.+
T Consensus 118 ~lvv~~ds~~~tl~dL~~~ak-----------~~p~~~~~g~~g~Gs----~~hl~~~~l~~~~Gi~~~~Vpy~G~~~a~ 182 (314)
T 2dvz_A 118 VVAVNPKFPAKDFKGFLEELK-----------KNPGKYSYGSSGTCG----VLHLMGESFKMATGTDIVHVPYKGSGPAV 182 (314)
T ss_dssp EEEECTTSSCSSHHHHHHHHH-----------TSTTTCEEEESCTTS----HHHHHHHHHHHHHTCCCEEEECSSHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHH-----------hCCCcEEEeCCCCCc----HHHHHHHHHHHHhCCCeEEcccCCHHHHH
Confidence 444555567889988887765 2343 4544444342 1222334445556764 234555544555
Q ss_pred HHHHH-hcCEEEEccCCcccccchHHHHHHhcCCC-EEec----------CCCCcc-----eeeecCceeeeecCCCCCh
Q 012132 351 APYLA-AIDVLVQNSQAWGECFGRITIEAMAFQLP-VLGT----------AAGGTT-----EIVVNGTTGLLHPVGKEGI 413 (470)
Q Consensus 351 ~~~~~-~aDv~v~pS~~~~E~~g~~~lEAma~G~P-vI~s----------~~~g~~-----e~v~~~~~G~l~~~~d~~~ 413 (470)
.+++. ..|+.+...- .+.+....|.- +|+. +++-+. .+......|++++.+- +
T Consensus 183 ~al~~G~vD~~~~~~~--------~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~--p 252 (314)
T 2dvz_A 183 ADAVGGQIELIFDNLP--------SSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGT--P 252 (314)
T ss_dssp HHHHHTSSSEEEEEHH--------HHHHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTC--C
T ss_pred HHHHcCCceEEEEcHH--------HHHHHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCC--C
Confidence 66654 5788875442 34556666643 3321 222111 1111234678888774 4
Q ss_pred H----HHHHHHHHHHhCHHHHHHHHHHH
Q 012132 414 T----PLAKNIVKLATHVERRLTMGKRG 437 (470)
Q Consensus 414 ~----~la~~i~~ll~~~~~~~~~~~~a 437 (470)
+ .|.+++.+++++++.++.+.+.+
T Consensus 253 ~~vv~~l~~al~~~~~~p~~~~~~~~~g 280 (314)
T 2dvz_A 253 MDVVNKLRDAAVVALKDPKVIKALDDQG 280 (314)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHCC
Confidence 4 55666666677888777765543
No 404
>3rh0_A Arsenate reductase; oxidoreductase; 1.72A {Corynebacterium glutamicum}
Probab=41.71 E-value=89 Score=24.41 Aligned_cols=81 Identities=14% Similarity=0.058 Sum_probs=41.2
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeE--ecCChhhHHhhc
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI--SAKGQETINTAL 149 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 149 (470)
.+++|||||+..- ..-...+..+.+.+...+++|.=.....+.... ......+.+.|+.+- ..+..... ...
T Consensus 18 ~~~~~VLFVC~gN--~cRSpmAEal~~~~~~~~~~v~SAGt~~g~~~d---p~a~~vl~e~Gidis~h~ar~l~~~-~~~ 91 (148)
T 3rh0_A 18 SHMKSVLFVCVGN--GGKSQMAAALAQKYASDSVEIHSAGTKPAQGLN---QLSVESIAEVGADMSQGIPKAIDPE-LLR 91 (148)
T ss_dssp --CCEEEEEESSS--SSHHHHHHHHHHHHCCTTSEEEEEESSCCSSCC---HHHHHHHHHTTCCCTTCCCCBCCHH-HHH
T ss_pred CCCCEEEEECCCc--hhHHHHHHHHHHHhcCCCEEEEecccCCCCCCC---HHHHHHHHHcCCCcCCCeeeECCHH-Hhc
Confidence 3467999999632 122355666666666544555443333322111 123445566777652 22222221 124
Q ss_pred CCcEEEEcc
Q 012132 150 KADLIVLNT 158 (470)
Q Consensus 150 ~~DiV~~~~ 158 (470)
.+|+|++-+
T Consensus 92 ~~DlIitM~ 100 (148)
T 3rh0_A 92 TVDRVVILG 100 (148)
T ss_dssp HCSEEEEES
T ss_pred CCCEEEEec
Confidence 689999875
No 405
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=41.67 E-value=28 Score=26.36 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=24.5
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
|++++|+++.... .....+...|.+.|++|....
T Consensus 1 M~~~~ilivdd~~------~~~~~l~~~l~~~g~~v~~~~ 34 (143)
T 3jte_A 1 MSLAKILVIDDES------TILQNIKFLLEIDGNEVLTAS 34 (143)
T ss_dssp --CCEEEEECSCH------HHHHHHHHHHHHTTCEEEEES
T ss_pred CCCCEEEEEcCCH------HHHHHHHHHHHhCCceEEEeC
Confidence 5678999998643 566677888888999887553
No 406
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=41.32 E-value=1.7e+02 Score=25.15 Aligned_cols=216 Identities=12% Similarity=-0.012 Sum_probs=100.2
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
+..+|.++.+.....--......+.+++.+.|+++.++....... . ... . . ......++|
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~-~-~~~-~----------------~-~~l~~~~vd 66 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNSRI-S-ERE-Q----------------I-LEFVHLKVD 66 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHH-H-HHH-H----------------H-HHHHHTTCS
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHH-H-HHH-H----------------H-HHHHHcCCC
Confidence 456899998764321113556667777888999999886543211 0 000 0 0 111235788
Q ss_pred EEEEcccchh---hhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhh-ccC
Q 012132 153 LIVLNTAVAG---KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERL-RIK 228 (470)
Q Consensus 153 iV~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~ 228 (470)
.|++...... ..+..+....+ |++......... .....+..+.........+.+.+.+ |..
T Consensus 67 giI~~~~~~~~~~~~~~~~~~~~i-----PvV~~~~~~~~~----------~~~~~V~~D~~~~g~~~~~~l~~~~~g~~ 131 (293)
T 3l6u_A 67 AIFITTLDDVYIGSAIEEAKKAGI-----PVFAIDRMIRSD----------AVVSSITSNNQMIGEQLASYIKNELIKQT 131 (293)
T ss_dssp EEEEECSCTTTTHHHHHHHHHTTC-----CEEEESSCCCCT----------TCSEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCChHHHHHHHHHHHHcCC-----CEEEecCCCCCC----------cceeEEecCHHHHHHHHHHHHHHHhccCC
Confidence 8877543322 22233223333 444432221110 0122333333333333344444333 322
Q ss_pred ---CCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccc
Q 012132 229 ---MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLE 305 (470)
Q Consensus 229 ---~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~ 305 (470)
..++.++....+..... ...+.+++.+.-.++ ..+.. .....-..+...+++.++.+ +
T Consensus 132 ~~~~~~i~~i~g~~~~~~~~---------~R~~gf~~~l~~~~g-~~~~~--~~~~~~~~~~~~~~~~~~l~-------~ 192 (293)
T 3l6u_A 132 GRSTGRIVEITGTANVYTTN---------ERHRGFLKGIENEPT-LSIVD--SVSGNYDPVTSERVMRQVID-------S 192 (293)
T ss_dssp SCSCEEEEEEECSTTCHHHH---------HHHHHHHHHHTTCTT-EEEEE--EEECTTCHHHHHHHHHHHHH-------T
T ss_pred CCCCceEEEEECCCCCchHH---------HHHHHHHHHHHhCCC-cEEee--eccCCCCHHHHHHHHHHHHH-------h
Confidence 12666665322221110 112233333321112 22211 12223345555666666544 3
Q ss_pred CCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccC
Q 012132 306 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348 (470)
Q Consensus 306 ~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~ 348 (470)
+++...+++.++ .....+-+.+++.|+. .|.+.|+..
T Consensus 193 ~~~~~ai~~~~d-----~~a~g~~~al~~~g~~-di~vig~d~ 229 (293)
T 3l6u_A 193 GIPFDAVYCHND-----DIAMGVLEALKKAKIS-GKIVVGIDG 229 (293)
T ss_dssp TCCCSEEEESSH-----HHHHHHHHHHHHTTCC-CCEEEEEEC
T ss_pred CCCCCEEEECCc-----hHHHHHHHHHHhCCCC-CeEEEEecC
Confidence 466777777764 3444566777888887 788888753
No 407
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=41.29 E-value=35 Score=28.99 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=29.5
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhC-CceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~-G~~V~v~~~~ 113 (470)
++||+.+.+.-+-.|-...+.+||..|+++ |+.|.++-.+
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 43 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDIS 43 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECC
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECC
Confidence 456666665433333368899999999999 9999998754
No 408
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=41.26 E-value=1e+02 Score=27.54 Aligned_cols=73 Identities=14% Similarity=0.118 Sum_probs=44.7
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhC--CceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC---------
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--------- 141 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 141 (470)
.++||+++.+.. ...+..|..+.++- +.+|..+.+..+. ........|++++....
T Consensus 104 ~~~ri~vl~Sg~-----g~nl~~ll~~~~~g~l~~~I~~Visn~~~--------~~~~A~~~gIp~~~~~~~~~~r~~~~ 170 (302)
T 3o1l_A 104 QKKRVVLMASRE-----SHCLADLLHRWHSDELDCDIACVISNHQD--------LRSMVEWHDIPYYHVPVDPKDKEPAF 170 (302)
T ss_dssp SCCEEEEEECSC-----CHHHHHHHHHHHTTCSCSEEEEEEESSST--------THHHHHTTTCCEEECCCCSSCCHHHH
T ss_pred CCcEEEEEEeCC-----chhHHHHHHHHHCCCCCcEEEEEEECcHH--------HHHHHHHcCCCEEEcCCCcCCHHHHH
Confidence 467888877532 35667777766543 4677766655443 12334567888765421
Q ss_pred --hhhHHhhcCCcEEEEcc
Q 012132 142 --QETINTALKADLIVLNT 158 (470)
Q Consensus 142 --~~~~~~~~~~DiV~~~~ 158 (470)
.....+..+||+|++-.
T Consensus 171 ~~~~~~l~~~~~DliVlag 189 (302)
T 3o1l_A 171 AEVSRLVGHHQADVVVLAR 189 (302)
T ss_dssp HHHHHHHHHTTCSEEEESS
T ss_pred HHHHHHHHHhCCCEEEHhH
Confidence 12344678999999865
No 409
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=41.25 E-value=27 Score=31.18 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=26.2
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
++|+||+.. |....-..+++.|.++||+|.+++...
T Consensus 6 ~~~~vlVtG------atG~iG~~l~~~L~~~g~~V~~~~r~~ 41 (321)
T 3vps_A 6 LKHRILITG------GAGFIGGHLARALVASGEEVTVLDDLR 41 (321)
T ss_dssp -CCEEEEET------TTSHHHHHHHHHHHHTTCCEEEECCCS
T ss_pred CCCeEEEEC------CCChHHHHHHHHHHHCCCEEEEEecCC
Confidence 457777664 334567788999999999999997543
No 410
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=41.19 E-value=86 Score=25.89 Aligned_cols=73 Identities=21% Similarity=0.173 Sum_probs=42.3
Q ss_pred ccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 74 SKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
+|||+++... |. ..-+......|.+.|++|.+++...+.. .......|+.+......... ....+|
T Consensus 2 ~~kV~ill~~----g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~--------~~v~~~~g~~v~~~~~l~~~-~~~~~D 68 (205)
T 2ab0_A 2 SASALVCLAP----GSEETEAVTTIDLLVRGGIKVTTASVASDGN--------LAITCSRGVKLLADAPLVEV-ADGEYD 68 (205)
T ss_dssp CCEEEEEECT----TCCHHHHHHHHHHHHHTTCEEEEEECSSTTC--------CEEECTTSCEEECSEEHHHH-TTSCCS
T ss_pred CcEEEEEEcC----CCcHHHHHHHHHHHHHCCCEEEEEeCCCCCC--------ceeecCCCeEEecCCCHHHC-CcccCC
Confidence 5689988763 22 3345556778888999999998665310 00011234444443333222 125789
Q ss_pred EEEEccc
Q 012132 153 LIVLNTA 159 (470)
Q Consensus 153 iV~~~~~ 159 (470)
+|++-..
T Consensus 69 ~livpGG 75 (205)
T 2ab0_A 69 VIVLPGG 75 (205)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9998764
No 411
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=41.11 E-value=29 Score=29.03 Aligned_cols=33 Identities=9% Similarity=-0.046 Sum_probs=24.2
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|||+++. |....-..+++.|.++||+|.+++..
T Consensus 1 MkilVtG------atG~iG~~l~~~L~~~g~~V~~~~R~ 33 (224)
T 3h2s_A 1 MKIAVLG------ATGRAGSAIVAEARRRGHEVLAVVRD 33 (224)
T ss_dssp CEEEEET------TTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEEc------CCCHHHHHHHHHHHHCCCEEEEEEec
Confidence 5666553 33456778889999999999998743
No 412
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=41.09 E-value=44 Score=24.75 Aligned_cols=39 Identities=18% Similarity=0.044 Sum_probs=25.2
Q ss_pred cccEEEEEeeccCCCchh---HHHHHHHHHHHhCCceEEEEecC
Q 012132 73 KSKLVLLVSHELSLSGGP---LLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~---~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|+|||+.|+. .|.|.. .....|-++-+++||++.|=+..
T Consensus 4 m~mkIvaVTa--CptGiAHTyMAAeaL~~aA~~~G~~ikVEtqG 45 (111)
T 2kyr_A 4 MSKKLIALCA--CPMGLAHTFMAAQALEEAAVEAGYEVKIETQG 45 (111)
T ss_dssp CCCEEEEEEE--ESSCHHHHHHHHHHHHHHHHHTSSEEEEEEEE
T ss_pred ccccEEEEEc--CCCcHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 3588888884 345553 22334555556789999998843
No 413
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=40.95 E-value=52 Score=28.42 Aligned_cols=35 Identities=14% Similarity=-0.005 Sum_probs=23.5
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
++.|+.+|+ ||..-.-..+++.|.++|++|.+...
T Consensus 2 ~~~k~vlVT-----Gas~gIG~aia~~l~~~G~~vv~~~~ 36 (258)
T 3oid_A 2 EQNKCALVT-----GSSRGVGKAAAIRLAENGYNIVINYA 36 (258)
T ss_dssp -CCCEEEES-----SCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCEEEEe-----cCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 334566666 23334566789999999999988643
No 414
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=40.92 E-value=1.2e+02 Score=28.04 Aligned_cols=47 Identities=13% Similarity=0.165 Sum_probs=29.2
Q ss_pred CHHHHHHhcCEEEEccCCc--cc--ccchHHHHHHhcCCCEEe--cCCCCcce
Q 012132 349 TVAPYLAAIDVLVQNSQAW--GE--CFGRITIEAMAFQLPVLG--TAAGGTTE 395 (470)
Q Consensus 349 ~~~~~~~~aDv~v~pS~~~--~E--~~g~~~lEAma~G~PvI~--s~~~g~~e 395 (470)
++.+.++.+|+++...... .. -+.--.++.|.-|.-+|- .+.||..|
T Consensus 258 ~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e 310 (381)
T 3p2y_A 258 ALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGNCE 310 (381)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBT
T ss_pred HHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCccc
Confidence 5678889999999653200 11 133456777777776663 45677655
No 415
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=40.86 E-value=30 Score=28.69 Aligned_cols=39 Identities=8% Similarity=0.075 Sum_probs=27.8
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
++++||++..+.. .+.....++++.|.+.|++|+++...
T Consensus 6 l~~k~IllgvTGs---~aa~k~~~l~~~L~~~g~~V~vv~T~ 44 (194)
T 1p3y_1 6 LKDKKLLIGICGS---ISSVGISSYLLYFKSFFKEIRVVMTK 44 (194)
T ss_dssp GGGCEEEEEECSC---GGGGGTHHHHHHHTTTSSEEEEEECH
T ss_pred cCCCEEEEEEECH---HHHHHHHHHHHHHHHCCCEEEEEEch
Confidence 3456777766421 12356788999999999999998754
No 416
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=40.82 E-value=58 Score=28.76 Aligned_cols=89 Identities=19% Similarity=0.099 Sum_probs=51.5
Q ss_pred HHHHHhcCEEEEccCCcccccchHHHHHHhc-CCCEEecCCCCccee-e---e-------cC-----ceeeeecCCCCCh
Q 012132 351 APYLAAIDVLVQNSQAWGECFGRITIEAMAF-QLPVLGTAAGGTTEI-V---V-------NG-----TTGLLHPVGKEGI 413 (470)
Q Consensus 351 ~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~-G~PvI~s~~~g~~e~-v---~-------~~-----~~G~l~~~~d~~~ 413 (470)
..-++.||++|..... .|+|--.+++++.. ++++|.... |+.-+ . . ++ .--+..+|.+ .
T Consensus 53 ~~~l~~Adlvv~~G~~-lE~w~~~~~~~~~~~~~~~v~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~--~ 128 (284)
T 3cx3_A 53 IAAIYDADVFVYHSHT-LESWAGSLDPNLKKSKVKVLEASE-GMTLERVPGLEDVEAGDGVDEKTLYDPHTWLDPEK--A 128 (284)
T ss_dssp HHHHHHSSEEEESCTT-TSCTTTTCCTTTTTCCCEEEETTT-TCCCCBCCC-------------CCBCCCGGGSHHH--H
T ss_pred HHHHHhCCEEEEcCCC-cHhHHHHHHHhcccCCCeEEEccC-CccccccCCcccccccccccCCCCCCCCcccCHHH--H
Confidence 3558899999987763 67777677776643 345553322 22100 0 0 00 1113344444 6
Q ss_pred HHHHHHHHHHHh--CHHHHHHHHHHHHHHHHH
Q 012132 414 TPLAKNIVKLAT--HVERRLTMGKRGYERVKE 443 (470)
Q Consensus 414 ~~la~~i~~ll~--~~~~~~~~~~~a~~~~~~ 443 (470)
..+++.|...|. ||+-...+.+|+.++..+
T Consensus 129 ~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~ 160 (284)
T 3cx3_A 129 GEEAQIIADKLSEVDSEHKETYQKNAQAFIKK 160 (284)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 677777777766 787777777777776644
No 417
>4etn_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.10A {Bacillus subtilis} PDB: 4eti_A 1zgg_A
Probab=40.80 E-value=71 Score=26.10 Aligned_cols=84 Identities=13% Similarity=0.054 Sum_probs=40.2
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHh-CCceEEEEecCCC-CCchhHHHhhhhhhhhcceeeE-ecCChhhHHhhc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRG-VGTKVNWITIQKP-SEEDEVIYSLEHKMWDRGVQVI-SAKGQETINTAL 149 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~-~G~~V~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 149 (470)
+++|||||+..-. .-...+..+.+.+.. .|.++.+.+..-. .............+.+.|+.+- ..+..... ...
T Consensus 33 ~~~~VLFVC~gNi--CRSpmAEai~r~~~~~~g~~~~v~SAGt~~~~G~~~dp~a~~vl~e~Gidishrar~lt~~-d~~ 109 (184)
T 4etn_A 33 GSMDIIFVCTGNT--SRSPMAEALFKSIAEREGLNVNVRSAGVFASPNGKATPHAVEALFEKHIALNHVSSPLTEE-LME 109 (184)
T ss_dssp -CEEEEEEESSSS--SHHHHHHHHHHHHHHHHTCCEEEEEEETTCCTTCBCCHHHHHHHHHTTCCCCCBCCBCCHH-HHH
T ss_pred CCCEEEEECCCch--hHHHHHHHHHHHHHHhcCCcEEEEeeecCCcCCCCCCHHHHHHHHHcCCCchhccCcCCHH-HcC
Confidence 3589999996321 113445555555543 3445666552211 1111111123445566777654 11212111 124
Q ss_pred CCcEEEEccc
Q 012132 150 KADLIVLNTA 159 (470)
Q Consensus 150 ~~DiV~~~~~ 159 (470)
.+|+|++-+.
T Consensus 110 ~~DlIltMd~ 119 (184)
T 4etn_A 110 SADLVLAMTH 119 (184)
T ss_dssp HCSEEEESSH
T ss_pred CCCEEEEcCc
Confidence 6999999764
No 418
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=40.79 E-value=28 Score=26.17 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=25.0
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
|++++|+++.... .....+...|.+.|++|..+.
T Consensus 1 m~~~~ilivdd~~------~~~~~l~~~L~~~g~~v~~~~ 34 (140)
T 2qr3_A 1 MSLGTIIIVDDNK------GVLTAVQLLLKNHFSKVITLS 34 (140)
T ss_dssp -CCCEEEEECSCH------HHHHHHHHHHTTTSSEEEEEC
T ss_pred CCCceEEEEeCCH------HHHHHHHHHHHhCCcEEEEeC
Confidence 5678999998653 566777888888899887543
No 419
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=40.77 E-value=74 Score=25.67 Aligned_cols=86 Identities=13% Similarity=-0.034 Sum_probs=41.1
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHH-hCC--ceEEEEecCCCC--CchhHHHhhhhhhhhcceeeEe--cCChhh
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLR-GVG--TKVNWITIQKPS--EEDEVIYSLEHKMWDRGVQVIS--AKGQET 144 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~-~~G--~~V~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 144 (470)
..|||||||+..-. --+..+..+.+.+. ++| ..+.|.+..-.. ............+.+.|+.+-. .+....
T Consensus 16 ~~M~kVLFVCtGNi--CRSpmAE~i~r~~~~~~gl~~~~~v~SAGt~~~~~G~~~d~~a~~~l~~~Gid~s~h~ar~l~~ 93 (173)
T 4etm_A 16 GSMISVLFVCLGNI--CRSPMAEAIFRDLAAKKGLEGKIKADSAGIGGWHIGNPPHEGTQEILRREGISFDGMLARQVSE 93 (173)
T ss_dssp SSCEEEEEEESSSS--SHHHHHHHHHHHHHHHTTCTTTEEEEEEESSCTTTTCCCCHHHHHHHHHTTCCCTTCCCCBCCH
T ss_pred CCccEEEEEeCCcc--hhhHHHHHHHHHHHHHcCCCCceEEeccccccCCCCCCCCHHHHHHHHHCCccccCCccccCCH
Confidence 35689999996321 11234444555443 344 346666522110 0001111234455667777632 222211
Q ss_pred HHhhcCCcEEEEcccc
Q 012132 145 INTALKADLIVLNTAV 160 (470)
Q Consensus 145 ~~~~~~~DiV~~~~~~ 160 (470)
..-..+|+|++-+..
T Consensus 94 -~d~~~~DlIl~Md~~ 108 (173)
T 4etm_A 94 -QDLDDFDYIIAMDAE 108 (173)
T ss_dssp -HHHHHCSEEEESSHH
T ss_pred -hhcCCCCEEEEeCch
Confidence 122468999998743
No 420
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=40.77 E-value=60 Score=28.76 Aligned_cols=67 Identities=15% Similarity=0.104 Sum_probs=39.2
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
++|||.++.. | ..-..+++.|.+.||+|.++...... .+.+...|+.. ........ . .|
T Consensus 14 ~~~~I~vIG~-----G--~mG~~~A~~l~~~G~~V~~~dr~~~~---------~~~~~~~g~~~--~~~~~~~~--~-aD 72 (296)
T 3qha_A 14 EQLKLGYIGL-----G--NMGAPMATRMTEWPGGVTVYDIRIEA---------MTPLAEAGATL--ADSVADVA--A-AD 72 (296)
T ss_dssp -CCCEEEECC-----S--TTHHHHHHHHTTSTTCEEEECSSTTT---------SHHHHHTTCEE--CSSHHHHT--T-SS
T ss_pred CCCeEEEECc-----C--HHHHHHHHHHHHCCCeEEEEeCCHHH---------HHHHHHCCCEE--cCCHHHHH--h-CC
Confidence 3578999863 2 34456788899999999988644332 11222334332 12222222 2 89
Q ss_pred EEEEcccc
Q 012132 153 LIVLNTAV 160 (470)
Q Consensus 153 iV~~~~~~ 160 (470)
+|+...+.
T Consensus 73 vvi~~vp~ 80 (296)
T 3qha_A 73 LIHITVLD 80 (296)
T ss_dssp EEEECCSS
T ss_pred EEEEECCC
Confidence 99988764
No 421
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A
Probab=40.76 E-value=93 Score=24.67 Aligned_cols=83 Identities=12% Similarity=-0.064 Sum_probs=40.0
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHH-hCC--ceEEEEecCCCC--CchhHHHhhhhhhhhcceeeE-ecCChhhHH
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLR-GVG--TKVNWITIQKPS--EEDEVIYSLEHKMWDRGVQVI-SAKGQETIN 146 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~-~~G--~~V~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 146 (470)
+++|||||+..-. .-+..+..+.+.+. +.| .++.+.+..-.. ............+.+.|+.+- ..+......
T Consensus 3 ~~~~VLFVC~gN~--cRSpmAEal~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~p~a~~~l~~~Gid~s~~ar~l~~~~ 80 (163)
T 1u2p_A 3 DPLHVTFVCTGNI--CRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNWHVGSCADERAAGVLRAHGYPTDHRAAQVGTEH 80 (163)
T ss_dssp -CEEEEEEESSSS--SHHHHHHHHHHHHHHHTTCTTTEEEEEEESSCTTTTCCCCHHHHHHHHHTTCCCCCCCCBCCHHH
T ss_pred CCCEEEEEcCCcH--hHHHHHHHHHHHHHHHCCCCCcEEEEecccCCCcCCCCCCHHHHHHHHHcCcCCCceeeECChhh
Confidence 3579999996421 11344455555543 334 346666622111 001111123445666777763 222222222
Q ss_pred hhcCCcEEEEccc
Q 012132 147 TALKADLIVLNTA 159 (470)
Q Consensus 147 ~~~~~DiV~~~~~ 159 (470)
... |+|++-+.
T Consensus 81 -~~~-DlIi~Md~ 91 (163)
T 1u2p_A 81 -LAA-DLLVALDR 91 (163)
T ss_dssp -HTS-SEEEESSH
T ss_pred -ccC-CEEEEeCH
Confidence 246 99999864
No 422
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=40.60 E-value=77 Score=28.95 Aligned_cols=70 Identities=10% Similarity=0.119 Sum_probs=46.6
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhcCCC
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (470)
+++.++-+-+. ..+..++.++++++. +.. ..++.++++ ..|+++..+. ...-.-.+.+|+..|++
T Consensus 47 ~~~~lvav~d~------~~~~~~~~a~~~g~~--~~~---~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGk~ 113 (357)
T 3ec7_A 47 SGVEVVAVCDI------VAGRAQAALDKYAIE--AKD---YNDYHDLINDKDVEVVIITAS--NEAHADVAVAALNANKY 113 (357)
T ss_dssp TTEEEEEEECS------STTHHHHHHHHHTCC--CEE---ESSHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEEeC------CHHHHHHHHHHhCCC--Cee---eCCHHHHhcCCCCCEEEEcCC--cHHHHHHHHHHHHCCCC
Confidence 78888755553 234456667777642 111 257778887 4899998776 44445567789999999
Q ss_pred EEecC
Q 012132 385 VLGTA 389 (470)
Q Consensus 385 vI~s~ 389 (470)
|++-.
T Consensus 114 Vl~EK 118 (357)
T 3ec7_A 114 VFCEK 118 (357)
T ss_dssp EEEES
T ss_pred EEeec
Confidence 98743
No 423
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=40.56 E-value=50 Score=29.68 Aligned_cols=67 Identities=9% Similarity=0.196 Sum_probs=42.4
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHH-HhcCEEEEccCCcccccchHHHHHHhcCCCE
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL-AAIDVLVQNSQAWGECFGRITIEAMAFQLPV 385 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~-~~aDv~v~pS~~~~E~~g~~~lEAma~G~Pv 385 (470)
+++.++ +-+. ..+..++++++++.+. .+... .+.+ ..+|+++..+. .....-.+.+|+..|++|
T Consensus 26 ~~~~l~-v~d~------~~~~~~~~a~~~g~~~--~~~~~----~~~l~~~~D~V~i~tp--~~~h~~~~~~al~~Gk~V 90 (323)
T 1xea_A 26 PDIELV-LCTR------NPKVLGTLATRYRVSA--TCTDY----RDVLQYGVDAVMIHAA--TDVHSTLAAFFLHLGIPT 90 (323)
T ss_dssp TTEEEE-EECS------CHHHHHHHHHHTTCCC--CCSST----TGGGGGCCSEEEECSC--GGGHHHHHHHHHHTTCCE
T ss_pred CCceEE-EEeC------CHHHHHHHHHHcCCCc--cccCH----HHHhhcCCCEEEEECC--chhHHHHHHHHHHCCCeE
Confidence 678888 5443 2455667777777531 01111 2223 57899998876 444455566899999999
Q ss_pred Eec
Q 012132 386 LGT 388 (470)
Q Consensus 386 I~s 388 (470)
++-
T Consensus 91 ~~E 93 (323)
T 1xea_A 91 FVD 93 (323)
T ss_dssp EEE
T ss_pred EEe
Confidence 874
No 424
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=40.52 E-value=35 Score=29.89 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=31.0
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
.+|++.|++.-+-.|-.....+||..|++.|..|.++-.+
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D 120 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGD 120 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4677777764444444689999999999999999998754
No 425
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=40.40 E-value=56 Score=27.94 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=22.8
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEE
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWI 110 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~ 110 (470)
.|.+++|+++..+. .....+...|.+.|+.|...
T Consensus 34 ~m~~~~ILivdd~~------~~~~~l~~~L~~~g~~v~~~ 67 (249)
T 3q9s_A 34 RMNEQRILVIEDDH------DIANVLRMDLTDAGYVVDHA 67 (249)
T ss_dssp ---CCEEEEECSCH------HHHHHHHHHHHTTTCEEEEE
T ss_pred CCCCCEEEEEECCH------HHHHHHHHHHHHCCCEEEEe
Confidence 35567999998654 45666777888889876654
No 426
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=40.33 E-value=2e+02 Score=25.63 Aligned_cols=142 Identities=10% Similarity=0.030 Sum_probs=75.7
Q ss_pred EEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCC-ceEEEEEeCCCCcChHHHHHHHHHHHhcCCC-CcEEEecccCCH
Q 012132 273 FAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP-SVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKTLTV 350 (470)
Q Consensus 273 i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~-~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-~~V~~~g~~~~~ 350 (470)
++.+..-.+.|.++.|+++++.- | .+.+-..|.|. ...-..+.+.+..|+. ..|-|.|..+.+
T Consensus 114 ~lvv~~ds~~~sl~dL~~~ak~~-----------p~~~~~g~~g~Gs----~~hl~~~~l~~~~Gi~~~~Vpy~G~~~a~ 178 (312)
T 2f5x_A 114 TIIARGDFPPNNIKELAEYVKKN-----------ADKISLANAGIGA----ASHLCGTMLVEALGVNLLTIPYKGTAPAM 178 (312)
T ss_dssp EEEECTTCSCCSHHHHHHHHHHH-----------GGGCEEEESSTTS----HHHHHHHHHHHHHTCCCEEEECSSHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhC-----------CCceEEeCCCCCc----HHHHHHHHHHHHHCCCeEEeccCChHHHH
Confidence 44455556789999998876532 4 34444444342 1222334445556764 234455544555
Q ss_pred HHHHH-hcCEEEEccCCcccccchHHHHHHhcCCC-EEec----------CCCC-----cceeeecCceeeeecCCCC--
Q 012132 351 APYLA-AIDVLVQNSQAWGECFGRITIEAMAFQLP-VLGT----------AAGG-----TTEIVVNGTTGLLHPVGKE-- 411 (470)
Q Consensus 351 ~~~~~-~aDv~v~pS~~~~E~~g~~~lEAma~G~P-vI~s----------~~~g-----~~e~v~~~~~G~l~~~~d~-- 411 (470)
.+++. ..|+.+...- .+.+.+..|.- +|+. +++- .+.+......|++++.+-+
T Consensus 179 ~aL~~G~VD~~~~~~~--------~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p~~ 250 (312)
T 2f5x_A 179 NDLLGKQVDLMCDQTT--------NTTQQITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKP 250 (312)
T ss_dssp HHHHTTSSCEEEEEHH--------HHHHHHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCHH
T ss_pred HHHHcCCccEEEechH--------HHHHHHHcCCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCCHH
Confidence 55553 5788775442 34555666643 3322 2221 1112112346788887740
Q ss_pred ChHHHHHHHHHHHhCHHHHHHHHHHH
Q 012132 412 GITPLAKNIVKLATHVERRLTMGKRG 437 (470)
Q Consensus 412 ~~~~la~~i~~ll~~~~~~~~~~~~a 437 (470)
-++.|.+++.+++++++.++.+.+.+
T Consensus 251 vv~~l~~al~~~~~~p~~~~~~~~~g 276 (312)
T 2f5x_A 251 VVDKLVKSLQAGLADPKFQERMKQLG 276 (312)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHCC
Confidence 12456666777777888777765544
No 427
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=39.85 E-value=1.9e+02 Score=25.29 Aligned_cols=99 Identities=11% Similarity=-0.041 Sum_probs=58.3
Q ss_pred cccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCc---------ChHHHHHHHHHHHhcCCCCcEEEecccCC
Q 012132 279 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA---------QTKFESELRNYVMQKKIQDRVHFVNKTLT 349 (470)
Q Consensus 279 l~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~---------~~~~~~~l~~~~~~~~l~~~V~~~g~~~~ 349 (470)
.......+.+++.+..+.+. ...++-.+.-.++ ..+....+++.++++|++--..+.. ..+
T Consensus 45 pc~~~~~e~a~~~a~~~k~~---------ga~~~k~~~~kprts~~~f~g~g~~gl~~l~~~~~~~Gl~~~te~~d-~~~ 114 (276)
T 1vs1_A 45 PCSVESWEQVREAALAVKEA---------GAHMLRGGAFKPRTSPYSFQGLGLEGLKLLRRAGDEAGLPVVTEVLD-PRH 114 (276)
T ss_dssp CSBCCCHHHHHHHHHHHHHH---------TCSEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCCEEEECCC-GGG
T ss_pred cCCCCCHHHHHHHHHHHHHh---------CCCEEEeEEEeCCCChhhhcCCCHHHHHHHHHHHHHcCCcEEEecCC-HHH
Confidence 34666788888888776542 1222222211110 1246778889999999862222222 234
Q ss_pred HHHHHHhcCEEEEccCCcccccchHHHHHH-hcCCCEEecCC
Q 012132 350 VAPYLAAIDVLVQNSQAWGECFGRITIEAM-AFQLPVLGTAA 390 (470)
Q Consensus 350 ~~~~~~~aDv~v~pS~~~~E~~g~~~lEAm-a~G~PvI~s~~ 390 (470)
+..+-...|++=.+|. +.--..+++++ ..|+||+.++-
T Consensus 115 ~~~l~~~vd~~kIgs~---~~~n~~ll~~~a~~~kPV~lk~G 153 (276)
T 1vs1_A 115 VETVSRYADMLQIGAR---NMQNFPLLREVGRSGKPVLLKRG 153 (276)
T ss_dssp HHHHHHHCSEEEECGG---GTTCHHHHHHHHHHTCCEEEECC
T ss_pred HHHHHHhCCeEEECcc---cccCHHHHHHHHccCCeEEEcCC
Confidence 4344344899999997 44445556544 47999998863
No 428
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=39.80 E-value=20 Score=32.18 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=24.5
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
|++|+||+.. |....-..+++.|.+.||+|.++.
T Consensus 1 M~~~~ilVtG------atG~iG~~l~~~L~~~g~~v~~~~ 34 (321)
T 1e6u_A 1 MAKQRVFIAG------HRGMVGSAIRRQLEQRGDVELVLR 34 (321)
T ss_dssp -CCEEEEEET------TTSHHHHHHHHHHTTCTTEEEECC
T ss_pred CCCCEEEEEC------CCcHHHHHHHHHHHhCCCeEEEEe
Confidence 4557877653 334567788999999999988765
No 429
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=39.73 E-value=82 Score=28.40 Aligned_cols=68 Identities=12% Similarity=0.078 Sum_probs=47.4
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhcCCCE
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPV 385 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~Pv 385 (470)
+++++-+.+. ..+..++++++++.+. + ..++.++++ ..|+++..+. ...-.-.+.+|+..|++|
T Consensus 28 ~~~l~av~d~------~~~~a~~~a~~~~~~~-~-----~~~~~~ll~~~~vD~V~i~tp--~~~H~~~~~~al~~GkhV 93 (334)
T 3ohs_X 28 EHQVVAVAAR------DLSRAKEFAQKHDIPK-A-----YGSYEELAKDPNVEVAYVGTQ--HPQHKAAVMLCLAAGKAV 93 (334)
T ss_dssp TEEEEEEECS------SHHHHHHHHHHHTCSC-E-----ESSHHHHHHCTTCCEEEECCC--GGGHHHHHHHHHHTTCEE
T ss_pred CeEEEEEEcC------CHHHHHHHHHHcCCCc-c-----cCCHHHHhcCCCCCEEEECCC--cHHHHHHHHHHHhcCCEE
Confidence 4677766654 3456677788887642 1 267788887 5899998876 444445577899999999
Q ss_pred EecC
Q 012132 386 LGTA 389 (470)
Q Consensus 386 I~s~ 389 (470)
++-.
T Consensus 94 l~EK 97 (334)
T 3ohs_X 94 LCEK 97 (334)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9753
No 430
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=39.55 E-value=1.1e+02 Score=22.35 Aligned_cols=109 Identities=19% Similarity=0.190 Sum_probs=61.0
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhc-CCCCcEE-EecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHh----
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQK-KIQDRVH-FVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---- 380 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~-~l~~~V~-~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---- 380 (470)
.+++|+.+.. .....++...+.. +. .+. ......+...++. ..|++++-..- .+.-|..+++.+.
T Consensus 3 ~~ilivdd~~----~~~~~l~~~l~~~~~~--~~~~~~~~~~~a~~~~~~~~~dlvllD~~l-~~~~g~~~~~~l~~~~~ 75 (130)
T 1dz3_A 3 IKVCIADDNR----ELVSLLDEYISSQPDM--EVIGTAYNGQDCLQMLEEKRPDILLLDIIM-PHLDGLAVLERIRAGFE 75 (130)
T ss_dssp EEEEEECSCH----HHHHHHHHHHHTSTTE--EEEEEESSHHHHHHHHHHHCCSEEEEESCC-SSSCHHHHHHHHHHHCS
T ss_pred eEEEEEcCCH----HHHHHHHHHHHhCCCc--eEEEEeCCHHHHHHHHhcCCCCEEEEecCC-CCCCHHHHHHHHHhcCC
Confidence 4566776642 3455666666654 21 121 2222233334433 35887764331 2334566666654
Q ss_pred cCCCEEe-cCCCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 381 FQLPVLG-TAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 381 ~G~PvI~-s~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
...|+|. |..+. ..+....|..+++..|-+ .++|.++|..++..
T Consensus 76 ~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~--~~~l~~~i~~~~~~ 123 (130)
T 1dz3_A 76 HQPNVIMLTAFGQEDVTKKAVELGASYFILKPFD--MENLAHHIRQVYGK 123 (130)
T ss_dssp SCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSC--CTTHHHHHHHHHHC
T ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHhcC
Confidence 2456654 33222 233445677899999988 89999999988764
No 431
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=39.50 E-value=18 Score=31.82 Aligned_cols=33 Identities=12% Similarity=-0.024 Sum_probs=25.3
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
+|+||+.. |....-..+++.|.++||+|.+++.
T Consensus 5 ~m~ilVtG------atG~iG~~l~~~L~~~g~~V~~~~r 37 (287)
T 3sc6_A 5 KERVIITG------ANGQLGKQLQEELNPEEYDIYPFDK 37 (287)
T ss_dssp CEEEEEES------TTSHHHHHHHHHSCTTTEEEEEECT
T ss_pred eeEEEEEC------CCCHHHHHHHHHHHhCCCEEEEecc
Confidence 46887764 3345677889999999999999875
No 432
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=39.27 E-value=47 Score=30.85 Aligned_cols=79 Identities=16% Similarity=0.221 Sum_probs=51.4
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCC----CchhHHHhhhhhhhhcceeeEecCChhhHHhhcC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS----EEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (470)
++|+++. +.....++|..|.+.|.+|+++...+.. ........+...+...|+.++.......+.....
T Consensus 147 ~~vvVIG-------gG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~ig~~~~ 219 (385)
T 3klj_A 147 GKAFIIG-------GGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEMGDLIR 219 (385)
T ss_dssp SCEEEEC-------CSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGCHHHHH
T ss_pred CeEEEEC-------CCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEcCeEEe
Confidence 4566653 3356778899999999999999754322 2233444456667778888876544443334456
Q ss_pred CcEEEEcccc
Q 012132 151 ADLIVLNTAV 160 (470)
Q Consensus 151 ~DiV~~~~~~ 160 (470)
.|.|+.....
T Consensus 220 ~D~vv~a~G~ 229 (385)
T 3klj_A 220 SSCVITAVGV 229 (385)
T ss_dssp HSEEEECCCE
T ss_pred cCeEEECcCc
Confidence 8988876643
No 433
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=39.27 E-value=30 Score=31.11 Aligned_cols=39 Identities=13% Similarity=-0.141 Sum_probs=28.2
Q ss_pred cccEEEEEeeccCC-Cch-hHHHHHHHHHHHhCCceEEEEe
Q 012132 73 KSKLVLLVSHELSL-SGG-PLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 73 ~~~kIl~v~~~~~~-~G~-~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
|+|||+++....+. ... -.....++++|.+.||+|..+.
T Consensus 12 ~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~ 52 (317)
T 4eg0_A 12 RFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFD 52 (317)
T ss_dssp GGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred hcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEe
Confidence 57899999853322 001 1357889999999999999987
No 434
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=39.26 E-value=1.4e+02 Score=28.20 Aligned_cols=71 Identities=11% Similarity=0.073 Sum_probs=47.9
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhcC--
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQ-- 382 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G-- 382 (470)
++++++-+-+. ..+..++++++++.++ +.. ..++.++++ ..|+++..+- ...-.-.+.+|+..|
T Consensus 48 ~~~~lvav~d~------~~~~~~~~a~~~g~~~-~~~---~~~~~~ll~~~~vD~V~i~tp--~~~H~~~~~~al~aG~~ 115 (438)
T 3btv_A 48 SQFQITALYSP------KIETSIATIQRLKLSN-ATA---FPTLESFASSSTIDMIVIAIQ--VASHYEVVMPLLEFSKN 115 (438)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHHTTCTT-CEE---ESSHHHHHHCSSCSEEEECSC--HHHHHHHHHHHHHHGGG
T ss_pred CCeEEEEEEeC------CHHHHHHHHHHcCCCc-cee---eCCHHHHhcCCCCCEEEEeCC--cHHHHHHHHHHHHCCCC
Confidence 67888766553 3455677788877642 222 156778887 5899998876 444445567899999
Q ss_pred ----CCEEecC
Q 012132 383 ----LPVLGTA 389 (470)
Q Consensus 383 ----~PvI~s~ 389 (470)
++|++-.
T Consensus 116 ~~~~khVl~EK 126 (438)
T 3btv_A 116 NPNLKYLFVEW 126 (438)
T ss_dssp CTTCCEEEEES
T ss_pred cccceeEEecC
Confidence 9998753
No 435
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=39.16 E-value=44 Score=28.95 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=27.5
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (470)
|+|||+...+.-. +.-+..|+++|.+.| +|+|+++....
T Consensus 1 Mp~ILlTNDDGi~---apGi~~L~~~l~~~g-~V~VvAP~~~~ 39 (251)
T 2wqk_A 1 MPTFLLVNDDGYF---SPGINALREALKSLG-RVVVVAPDRNL 39 (251)
T ss_dssp -CEEEEECSSCTT---CHHHHHHHHHHTTTS-EEEEEEESSCC
T ss_pred CCEEEEEcCCCCC---cHHHHHHHHHHHhCC-CEEEEeeCCCC
Confidence 4688887765321 355888999999998 69988865543
No 436
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=39.15 E-value=27 Score=31.05 Aligned_cols=39 Identities=5% Similarity=0.037 Sum_probs=27.7
Q ss_pred cEEEEEeeccCCCc-hhHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSG-GPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G-~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|||++++.....-- .......+++++.++||+|.++...
T Consensus 2 m~i~il~~~~~~~~~~~~s~~~l~~a~~~~G~~v~~~d~~ 41 (316)
T 1gsa_A 2 IKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMG 41 (316)
T ss_dssp CEEEEECSCGGGCCTTTCHHHHHHHHHHHTTCEEEEECGG
T ss_pred ceEEEEeCcHHhCCcCCChHHHHHHHHHHCCCEEEEEchh
Confidence 69999997542100 0134567999999999999998753
No 437
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=39.09 E-value=33 Score=30.91 Aligned_cols=37 Identities=24% Similarity=0.014 Sum_probs=25.2
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
|+.|+|++.. |....-..+++.|.++||+|.++....
T Consensus 1 m~~~~vlVtG------atG~iG~~l~~~L~~~G~~V~~~~r~~ 37 (345)
T 2z1m_A 1 MSGKRALITG------IRGQDGAYLAKLLLEKGYEVYGADRRS 37 (345)
T ss_dssp --CCEEEEET------TTSHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred CCCCEEEEEC------CCChHHHHHHHHHHHCCCEEEEEECCC
Confidence 3456776653 334566778889999999999887543
No 438
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=39.06 E-value=1.9e+02 Score=25.04 Aligned_cols=104 Identities=12% Similarity=0.018 Sum_probs=61.8
Q ss_pred EEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcC---------hHHHHHHHHHHHhcCCCCcEEE
Q 012132 273 FAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ---------TKFESELRNYVMQKKIQDRVHF 343 (470)
Q Consensus 273 i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~---------~~~~~~l~~~~~~~~l~~~V~~ 343 (470)
++.+|- +.....+..++.+..+.+ -.+.++-.+.-.+.. .+....+++..+++|++--..+
T Consensus 25 ~vIAgp-c~~~~~e~a~~~a~~l~~---------~Ga~~vk~~~fkprts~~~~~g~~~egl~~l~~~~~~~Gl~~~te~ 94 (262)
T 1zco_A 25 TIIAGP-CSIESREQIMKVAEFLAE---------VGIKVLRGGAFKPRTSPYSFQGYGEKALRWMREAADEYGLVTVTEV 94 (262)
T ss_dssp EEEEEC-SBCCCHHHHHHHHHHHHH---------TTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEEC
T ss_pred EEEEeC-CCCCCHHHHHHHHHHHHH---------cCCCEEEEEecccCCCcccccCccHHHHHHHHHHHHHcCCcEEEee
Confidence 333444 666778888888877755 233444444321111 2467778888889987522222
Q ss_pred ecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHh-cCCCEEecCC
Q 012132 344 VNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA-FQLPVLGTAA 390 (470)
Q Consensus 344 ~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma-~G~PvI~s~~ 390 (470)
+. ...+..+-...|++=.+|. +.-...++++++ .|+||+.++-
T Consensus 95 ~d-~~~~~~l~~~vd~~kIga~---~~~n~~ll~~~a~~~kPV~lk~G 138 (262)
T 1zco_A 95 MD-TRHVELVAKYSDILQIGAR---NSQNFELLKEVGKVENPVLLKRG 138 (262)
T ss_dssp CC-GGGHHHHHHHCSEEEECGG---GTTCHHHHHHHTTSSSCEEEECC
T ss_pred CC-HHhHHHHHhhCCEEEECcc---cccCHHHHHHHHhcCCcEEEecC
Confidence 22 2334334344899999997 444455555554 7999998863
No 439
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=38.82 E-value=1.8e+02 Score=27.50 Aligned_cols=68 Identities=18% Similarity=0.161 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCCh--------hh--HHhhcCCcEEEEccc
Q 012132 90 PLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ--------ET--INTALKADLIVLNTA 159 (470)
Q Consensus 90 ~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~~~~~~DiV~~~~~ 159 (470)
...+..|+..|+++|+.|.+++.+.... .....+.......+++++..... .. ......+|+|++-++
T Consensus 114 TTt~~kLA~~l~~~G~kVllv~~D~~R~--aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTa 191 (443)
T 3dm5_A 114 TTTVAKLARYFQKRGYKVGVVCSDTWRP--GAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTA 191 (443)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEECCCSST--HHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCCCcch--hHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 6889999999999999999998654332 12223333444556666653211 11 112345899988764
No 440
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=38.61 E-value=64 Score=27.75 Aligned_cols=34 Identities=18% Similarity=0.018 Sum_probs=24.4
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
||..+|+ ||..-.-..+++.|.++|++|.++...
T Consensus 7 ~k~vlVT-----Gas~gIG~~~a~~l~~~G~~v~~~~~~ 40 (264)
T 3i4f_A 7 VRHALIT-----AGTKGLGKQVTEKLLAKGYSVTVTYHS 40 (264)
T ss_dssp CCEEEET-----TTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred cCEEEEe-----CCCchhHHHHHHHHHHCCCEEEEEcCC
Confidence 4556665 233456678899999999999987644
No 441
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=38.57 E-value=40 Score=29.48 Aligned_cols=37 Identities=16% Similarity=0.056 Sum_probs=27.4
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
.+|++++..-..||- -.-.|+.|...|++|.|+....
T Consensus 80 ~~VlVlcG~GNNGGD---Glv~AR~L~~~G~~V~V~~~~~ 116 (265)
T 2o8n_A 80 PTVLVICGPGNNGGD---GLVCARHLKLFGYQPTIYYPKR 116 (265)
T ss_dssp CEEEEEECSSHHHHH---HHHHHHHHHHTTCEEEEECCSC
T ss_pred CeEEEEECCCCCHHH---HHHHHHHHHHCCCcEEEEEeCC
Confidence 489998865444443 3567899999999999987543
No 442
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=38.45 E-value=1.3e+02 Score=26.56 Aligned_cols=73 Identities=15% Similarity=0.088 Sum_probs=44.7
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhC--CceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC---------
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--------- 141 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 141 (470)
+++||+++.+.. ...+..|..+.++- ..+|..+.+.++.. .......|++++..+.
T Consensus 89 ~~~ri~vl~Sg~-----g~~l~~ll~~~~~g~l~~~i~~Visn~~~~--------~~~A~~~gIp~~~~~~~~~~r~~~~ 155 (286)
T 3n0v_A 89 HRPKVVIMVSKA-----DHCLNDLLYRQRIGQLGMDVVAVVSNHPDL--------EPLAHWHKIPYYHFALDPKDKPGQE 155 (286)
T ss_dssp CCCEEEEEESSC-----CHHHHHHHHHHHTTSSCCEEEEEEESSSTT--------HHHHHHTTCCEEECCCBTTBHHHHH
T ss_pred CCcEEEEEEeCC-----CCCHHHHHHHHHCCCCCcEEEEEEeCcHHH--------HHHHHHcCCCEEEeCCCcCCHHHHH
Confidence 467888877532 35677777776543 46777666554431 2335567888775321
Q ss_pred --hhhHHhhcCCcEEEEcc
Q 012132 142 --QETINTALKADLIVLNT 158 (470)
Q Consensus 142 --~~~~~~~~~~DiV~~~~ 158 (470)
.....+..++|+|++-.
T Consensus 156 ~~~~~~l~~~~~Dlivla~ 174 (286)
T 3n0v_A 156 RKVLQVIEETGAELVILAR 174 (286)
T ss_dssp HHHHHHHHHHTCSEEEESS
T ss_pred HHHHHHHHhcCCCEEEecc
Confidence 12344568999999865
No 443
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=38.20 E-value=2e+02 Score=24.94 Aligned_cols=39 Identities=8% Similarity=-0.170 Sum_probs=25.2
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
+.+|.++.+.....--......+-+++.+.|+++.++..
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~ 40 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV 40 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC
Confidence 457888887543211134555666777788999987754
No 444
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=38.06 E-value=44 Score=24.59 Aligned_cols=37 Identities=14% Similarity=-0.068 Sum_probs=26.5
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
++|||++++... ......+..+-++..++|.+|.+..
T Consensus 5 ~~mkIlL~C~aG--mSTsllv~km~~~a~~~gi~v~i~a 41 (108)
T 3nbm_A 5 KELKVLVLCAGS--GTSAQLANAINEGANLTEVRVIANS 41 (108)
T ss_dssp CCEEEEEEESSS--SHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred cCceEEEECCCC--CCHHHHHHHHHHHHHHCCCceEEEE
Confidence 468999998622 1114566777777788899999976
No 445
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=37.95 E-value=92 Score=26.16 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=23.0
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEE
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWI 110 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~ 110 (470)
|+++|+++..+. .....+...|.+.|++|..+
T Consensus 4 m~~~ILivdd~~------~~~~~l~~~L~~~g~~v~~~ 35 (238)
T 2gwr_A 4 MRQRILVVDDDA------SLAEMLTIVLRGEGFDTAVI 35 (238)
T ss_dssp CCCEEEEECSCH------HHHHHHHHHHHHTTCEEEEE
T ss_pred ccCeEEEEeCCH------HHHHHHHHHHHHCCCEEEEE
Confidence 346899998654 45666777788889997654
No 446
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=37.91 E-value=1.3e+02 Score=24.95 Aligned_cols=109 Identities=10% Similarity=0.093 Sum_probs=65.5
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHh--cCCC
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLP 384 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma--~G~P 384 (470)
.+++|+.+.. .....+....+..|. .|.......+....+. ..|++++-..- .+.-|+.+++.+. ..+|
T Consensus 5 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvllD~~l-~~~~g~~~~~~l~~~~~~~ 77 (230)
T 2oqr_A 5 TSVLIVEDEE----SLADPLAFLLRKEGF--EATVVTDGPAALAEFDRAGADIVLLDLML-PGMSGTDVCKQLRARSSVP 77 (230)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEECSHHHHHHHHHHHCCSEEEEESSC-SSSCHHHHHHHHHHHCSCS
T ss_pred CeEEEEeCCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHhccCCCEEEEECCC-CCCCHHHHHHHHHcCCCCC
Confidence 4667777652 356667777776554 3443333333334433 35887764431 3334566665553 4788
Q ss_pred EEecCCC-C---cceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 385 VLGTAAG-G---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 385 vI~s~~~-g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
+|.-... . ..+.+..|..|++..|.+ .++|..+|..++..
T Consensus 78 ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 78 VIMVTARDSEIDKVVGLELGADDYVTKPYS--ARELIARIRAVLRR 121 (230)
T ss_dssp EEEEECCHHHHHHHHHHHHCCSCCCCSSCC--HHHHHHHHHHHHTT
T ss_pred EEEEeCCCcHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHhh
Confidence 7754322 1 233345577889999888 99999999998764
No 447
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=37.75 E-value=81 Score=29.81 Aligned_cols=83 Identities=11% Similarity=0.099 Sum_probs=45.2
Q ss_pred CCcccccccEEEEEeeccCCCchhHHHH-HHHHHHHhC-CceEEEEecCCCCCchhHHHhhhhhhhhccee---eEecCC
Q 012132 67 SPLSFMKSKLVLLVSHELSLSGGPLLLM-ELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ---VISAKG 141 (470)
Q Consensus 67 ~~~~~~~~~kIl~v~~~~~~~G~~~~~~-~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 141 (470)
.+...|+++||.+|.. | .... .+++.|.+. ++++..++...... ........++. +.....
T Consensus 76 ~~~~~~~~irigiIG~-----G--~~g~~~~~~~l~~~~~~~lvav~d~~~~~-------~~~~a~~~g~~~~~~~~~~~ 141 (433)
T 1h6d_A 76 RPMPEDRRFGYAIVGL-----G--KYALNQILPGFAGCQHSRIEALVSGNAEK-------AKIVAAEYGVDPRKIYDYSN 141 (433)
T ss_dssp SCCCCCCCEEEEEECC-----S--HHHHHTHHHHTTTCSSEEEEEEECSCHHH-------HHHHHHHTTCCGGGEECSSS
T ss_pred CCCCCCCceEEEEECC-----c--HHHHHHHHHHHhhCCCcEEEEEEcCCHHH-------HHHHHHHhCCCcccccccCC
Confidence 3455677889999874 2 2332 456667664 57776555332110 11112223332 222334
Q ss_pred hhhHHhhcCCcEEEEcccchhh
Q 012132 142 QETINTALKADLIVLNTAVAGK 163 (470)
Q Consensus 142 ~~~~~~~~~~DiV~~~~~~~~~ 163 (470)
...+....++|+|++.++...+
T Consensus 142 ~~~ll~~~~vD~V~iatp~~~h 163 (433)
T 1h6d_A 142 FDKIAKDPKIDAVYIILPNSLH 163 (433)
T ss_dssp GGGGGGCTTCCEEEECSCGGGH
T ss_pred HHHHhcCCCCCEEEEcCCchhH
Confidence 5555566689999998866443
No 448
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=37.60 E-value=45 Score=24.17 Aligned_cols=107 Identities=14% Similarity=0.097 Sum_probs=61.2
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHH---hcCCC
Q 012132 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAM---AFQLP 384 (470)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAm---a~G~P 384 (470)
+++|+.+.. .....++...+..|. .+.......+....+. ..|++++-..- .+.-|..+++.+ ..++|
T Consensus 5 ~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~~~~~~~~~~~dlvi~d~~~-~~~~g~~~~~~l~~~~~~~~ 77 (124)
T 1dc7_A 5 IVWVVDDDS----SIRWVLERALAGAGL--TCTTFENGNEVLAALASKTPDVLLSDIRM-PGMDGLALLKQIKQRHPMLP 77 (124)
T ss_dssp CCEEECSSS----SHHHHHHHHHTTTTC--CCEECCCTTHHHHHSSSCCCSCEEECSCS-SHHHHCSTHHHHHHHCTTSC
T ss_pred EEEEEeCCH----HHHHHHHHHHHhCCc--EEEEeCCHHHHHHHHhcCCCCEEEEeeec-CCCCHHHHHHHHHhhCCCCC
Confidence 456666653 356667777766554 2444443344444443 35777764331 222233344444 34677
Q ss_pred EEecC-CC---CcceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 385 VLGTA-AG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 385 vI~s~-~~---g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
+|... .. ...+.+..|..+++..|-+ .+++...+..++.
T Consensus 78 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~ 120 (124)
T 1dc7_A 78 VIIMTAHSDLDAAVSAYQQGAFDYLPKPFD--IDEAVALVERAIS 120 (124)
T ss_dssp CCCBCCSTTSTTTTSSCTTCCCCCBCSSCC--HHHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHhcCcceEeeCCCC--HHHHHHHHHHHHH
Confidence 76532 22 2344555677889999888 9999999987653
No 449
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=37.41 E-value=26 Score=29.95 Aligned_cols=36 Identities=8% Similarity=-0.028 Sum_probs=28.2
Q ss_pred cEEEEEeeccCCCch--hHHHHHHHHHHHhCCceEEEEecCC
Q 012132 75 KLVLLVSHELSLSGG--PLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~--~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
|||++ +. .||. ...+.+||..|+++|+.|.++-...
T Consensus 1 mkI~v-s~---kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 1 MKLAV-AG---KGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp CEEEE-EC---SSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred CEEEE-ec---CCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 57877 42 4554 5889999999999999999987554
No 450
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=37.41 E-value=89 Score=28.07 Aligned_cols=74 Identities=16% Similarity=0.128 Sum_probs=42.6
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhC-CceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCC
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (470)
|++||.++.. | .....+++.|.+. |+++..++..... .........++. ......+....++
T Consensus 2 m~~~vgiiG~-----G--~~g~~~~~~l~~~~~~~l~av~d~~~~-------~~~~~~~~~~~~---~~~~~~~l~~~~~ 64 (331)
T 4hkt_A 2 MTVRFGLLGA-----G--RIGKVHAKAVSGNADARLVAVADAFPA-------AAEAIAGAYGCE---VRTIDAIEAAADI 64 (331)
T ss_dssp -CEEEEEECC-----S--HHHHHHHHHHHHCTTEEEEEEECSSHH-------HHHHHHHHTTCE---ECCHHHHHHCTTC
T ss_pred CceEEEEECC-----C--HHHHHHHHHHhhCCCcEEEEEECCCHH-------HHHHHHHHhCCC---cCCHHHHhcCCCC
Confidence 3579999884 2 2333466667664 7787766533221 112222334554 3455666666789
Q ss_pred cEEEEcccchhh
Q 012132 152 DLIVLNTAVAGK 163 (470)
Q Consensus 152 DiV~~~~~~~~~ 163 (470)
|+|++.++...+
T Consensus 65 D~V~i~tp~~~h 76 (331)
T 4hkt_A 65 DAVVICTPTDTH 76 (331)
T ss_dssp CEEEECSCGGGH
T ss_pred CEEEEeCCchhH
Confidence 999998866443
No 451
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=37.36 E-value=32 Score=31.19 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=24.9
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
.++|+||+.. |....-..+++.|.++||+|.++....
T Consensus 17 ~~~~~vlVtG------atG~iG~~l~~~L~~~G~~V~~~~r~~ 53 (347)
T 4id9_A 17 RGSHMILVTG------SAGRVGRAVVAALRTQGRTVRGFDLRP 53 (347)
T ss_dssp ----CEEEET------TTSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCCEEEEEC------CCChHHHHHHHHHHhCCCEEEEEeCCC
Confidence 3456777663 334567788899999999999987543
No 452
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.20A {Homo sapiens}
Probab=37.03 E-value=52 Score=28.67 Aligned_cols=37 Identities=11% Similarity=-0.094 Sum_probs=27.3
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
.+|++++..-..||- -.-.|+.|...|++|+|+....
T Consensus 86 ~~vlVlcG~GNNGGD---Glv~AR~L~~~G~~V~v~~~~~ 122 (259)
T 3d3k_A 86 PTVALLCGPHVKGAQ---GISCGRHLANHDVQVILFLPNF 122 (259)
T ss_dssp CEEEEEECSSHHHHH---HHHHHHHHHHTTCEEEEECCBC
T ss_pred CeEEEEECCCCCHHH---HHHHHHHHHHCCCeEEEEEecC
Confidence 489998865444443 3567899999999999987543
No 453
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=36.89 E-value=43 Score=27.85 Aligned_cols=32 Identities=22% Similarity=0.018 Sum_probs=22.7
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEE
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWI 110 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~ 110 (470)
|+|+|+++..+. .....+...|...|++|...
T Consensus 1 M~~~ilivdd~~------~~~~~l~~~L~~~g~~v~~~ 32 (225)
T 1kgs_A 1 MNVRVLVVEDER------DLADLITEALKKEMFTVDVC 32 (225)
T ss_dssp -CCEEEEECSSH------HHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEEeCCH------HHHHHHHHHHHHCCCEEEEE
Confidence 357999998653 45566777788889998644
No 454
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=36.81 E-value=34 Score=28.49 Aligned_cols=33 Identities=9% Similarity=-0.068 Sum_probs=24.8
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|||+++. |....-..+++.|.+.||+|.+++..
T Consensus 1 M~ilItG------atG~iG~~l~~~L~~~g~~V~~~~R~ 33 (219)
T 3dqp_A 1 MKIFIVG------STGRVGKSLLKSLSTTDYQIYAGARK 33 (219)
T ss_dssp CEEEEES------TTSHHHHHHHHHHTTSSCEEEEEESS
T ss_pred CeEEEEC------CCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 4776653 33456678899999999999999854
No 455
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=36.70 E-value=41 Score=28.06 Aligned_cols=24 Identities=13% Similarity=-0.022 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHH-hCCceEEEEecC
Q 012132 90 PLLLMELAFLLR-GVGTKVNWITIQ 113 (470)
Q Consensus 90 ~~~~~~l~~~L~-~~G~~V~v~~~~ 113 (470)
...-..+++.|. +.||+|.++...
T Consensus 15 g~iG~~~~~~l~~~~g~~V~~~~r~ 39 (221)
T 3r6d_A 15 GQIAQXLTATLLTYTDMHITLYGRQ 39 (221)
T ss_dssp SHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred cHHHHHHHHHHHhcCCceEEEEecC
Confidence 345677888888 899999998743
No 456
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=36.40 E-value=54 Score=27.11 Aligned_cols=36 Identities=22% Similarity=0.074 Sum_probs=25.6
Q ss_pred ccccEEEEEeeccCC-C----chhHHHHHHHHHHHhCCceE
Q 012132 72 MKSKLVLLVSHELSL-S----GGPLLLMELAFLLRGVGTKV 107 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~-~----G~~~~~~~l~~~L~~~G~~V 107 (470)
|++++|.+++..-.. . -....+.+|++.|+++|+.|
T Consensus 21 ~~m~~IaV~Gss~~~~~~~~~~~~~~A~~lg~~LA~~G~~v 61 (195)
T 1rcu_A 21 GHMKKVVVVGYSGPVNKSPVSELRDICLELGRTLAKKGYLV 61 (195)
T ss_dssp --CCEEEEEECCSCTTSTTTGGGHHHHHHHHHHHHHTTCEE
T ss_pred CCCCeEEEEecCCCCCccccHHHHHHHHHHHHHHHHCCCEE
Confidence 445689999975332 1 34588999999999998754
No 457
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=36.31 E-value=44 Score=30.94 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=26.7
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
++|||+++.. | .....++++++++|++|.++....
T Consensus 10 ~~~~ili~g~-----g--~~~~~~~~a~~~~G~~v~~~~~~~ 44 (391)
T 1kjq_A 10 AATRVMLLGS-----G--ELGKEVAIECQRLGVEVIAVDRYA 44 (391)
T ss_dssp TCCEEEEESC-----S--HHHHHHHHHHHTTTCEEEEEESST
T ss_pred CCCEEEEECC-----C--HHHHHHHHHHHHcCCEEEEEECCC
Confidence 3579999863 2 346778999999999998887544
No 458
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=35.94 E-value=1.5e+02 Score=26.17 Aligned_cols=73 Identities=15% Similarity=0.072 Sum_probs=44.5
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhC--CceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC---------
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--------- 141 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 141 (470)
+++||+++.+. ....+..|..+.++. ..+|..+.+.++.. .......|++++..+.
T Consensus 94 ~~~ri~vl~Sg-----~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~--------~~~A~~~gIp~~~~~~~~~~r~~~~ 160 (292)
T 3lou_A 94 ARPKVLIMVSK-----LEHCLADLLFRWKMGELKMDIVGIVSNHPDF--------APLAAQHGLPFRHFPITADTKAQQE 160 (292)
T ss_dssp SCCEEEEEECS-----CCHHHHHHHHHHHHTSSCCEEEEEEESSSTT--------HHHHHHTTCCEEECCCCSSCHHHHH
T ss_pred CCCEEEEEEcC-----CCcCHHHHHHHHHcCCCCcEEEEEEeCcHHH--------HHHHHHcCCCEEEeCCCcCCHHHHH
Confidence 46788887752 235667777766543 46776666554431 2335567888775331
Q ss_pred --hhhHHhhcCCcEEEEcc
Q 012132 142 --QETINTALKADLIVLNT 158 (470)
Q Consensus 142 --~~~~~~~~~~DiV~~~~ 158 (470)
.....+..++|+|++-.
T Consensus 161 ~~~~~~l~~~~~Dlivla~ 179 (292)
T 3lou_A 161 AQWLDVFETSGAELVILAR 179 (292)
T ss_dssp HHHHHHHHHHTCSEEEESS
T ss_pred HHHHHHHHHhCCCEEEecC
Confidence 12344668999999865
No 459
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=35.78 E-value=29 Score=31.53 Aligned_cols=34 Identities=21% Similarity=0.146 Sum_probs=25.0
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
|++|||+++.. | ..-..++..|.+.|++|+++..
T Consensus 1 M~~mkI~IiGa-----G--~~G~~~a~~L~~~g~~V~~~~r 34 (335)
T 3ghy_A 1 MSLTRICIVGA-----G--AVGGYLGARLALAGEAINVLAR 34 (335)
T ss_dssp -CCCCEEEESC-----C--HHHHHHHHHHHHTTCCEEEECC
T ss_pred CCCCEEEEECc-----C--HHHHHHHHHHHHCCCEEEEEEC
Confidence 45689999863 2 3455678888889999999874
No 460
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=35.73 E-value=51 Score=23.84 Aligned_cols=32 Identities=16% Similarity=0.001 Sum_probs=23.1
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCC-ceEEEEec
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVG-TKVNWITI 112 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G-~~V~v~~~ 112 (470)
+|+|+++.. ...-..+++.|.+.| ++|.++..
T Consensus 5 ~~~v~I~G~-------G~iG~~~~~~l~~~g~~~v~~~~r 37 (118)
T 3ic5_A 5 RWNICVVGA-------GKIGQMIAALLKTSSNYSVTVADH 37 (118)
T ss_dssp CEEEEEECC-------SHHHHHHHHHHHHCSSEEEEEEES
T ss_pred cCeEEEECC-------CHHHHHHHHHHHhCCCceEEEEeC
Confidence 468887742 235566788888999 99888764
No 461
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=35.56 E-value=57 Score=29.22 Aligned_cols=37 Identities=11% Similarity=-0.100 Sum_probs=27.3
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
.+|++++.....|| -..-.|+.|...|++|.|+....
T Consensus 133 ~~vlVlcG~GNNGG---DGlv~AR~L~~~G~~V~V~~~~~ 169 (306)
T 3d3j_A 133 PTVALLCGPHVKGA---QGISCGRHLANHDVQVILFLPNF 169 (306)
T ss_dssp CEEEEEECSSHHHH---HHHHHHHHHHHTTCEEEEECCCC
T ss_pred CeEEEEECCCCCHH---HHHHHHHHHHHCCCcEEEEEecC
Confidence 47999886544444 33567899999999999987553
No 462
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=35.49 E-value=74 Score=26.69 Aligned_cols=42 Identities=24% Similarity=0.174 Sum_probs=29.1
Q ss_pred ccEEEEEeeccCC------Cch-hHHHHHHHHHHHhCCceEEEEecCCC
Q 012132 74 SKLVLLVSHELSL------SGG-PLLLMELAFLLRGVGTKVNWITIQKP 115 (470)
Q Consensus 74 ~~kIl~v~~~~~~------~G~-~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (470)
++||+++...... .|. ..-+......|.+.|++|.+++....
T Consensus 5 ~~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~ 53 (224)
T 1u9c_A 5 SKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGG 53 (224)
T ss_dssp CCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCB
T ss_pred CceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 3689998874321 333 34566677788889999999997654
No 463
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=35.36 E-value=34 Score=31.68 Aligned_cols=30 Identities=27% Similarity=0.091 Sum_probs=23.5
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
|||+||.- ...=..+|..|++.|++|+|+=
T Consensus 2 m~V~IVGa-------GpaGl~~A~~L~~~G~~v~v~E 31 (412)
T 4hb9_A 2 MHVGIIGA-------GIGGTCLAHGLRKHGIKVTIYE 31 (412)
T ss_dssp CEEEEECC-------SHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECc-------CHHHHHHHHHHHhCCCCEEEEe
Confidence 78998862 2345667889999999999984
No 464
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=35.32 E-value=1.1e+02 Score=27.52 Aligned_cols=87 Identities=9% Similarity=-0.016 Sum_probs=53.8
Q ss_pred HHHHhcCEEEEccCCcccccchHHHHHHhcCCC-EEecCCCCcc--eeeec----CceeeeecCCCCChHHHHHHHHHHH
Q 012132 352 PYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP-VLGTAAGGTT--EIVVN----GTTGLLHPVGKEGITPLAKNIVKLA 424 (470)
Q Consensus 352 ~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~P-vI~s~~~g~~--e~v~~----~~~G~l~~~~d~~~~~la~~i~~ll 424 (470)
.-++.||++|..... .|++--.++++.. +.+ +|.... |+. +...+ ..--+..+|.+ ...+++.|.+.|
T Consensus 83 ~~l~~ADlvv~~G~~-lE~w~~~~~~~~~-~~~~~v~~s~-~i~~~~~~~~~~~~~DPHvWldp~n--~~~~a~~I~~~L 157 (313)
T 1toa_A 83 EWLGNADLILYNGLH-LETKMGEVFSKLR-GSRLVVAVSE-TIPVSQRLSLEEAEFDPHVWFDVKL--WSYSVKAVYESL 157 (313)
T ss_dssp HHHHHCSEEEECCTT-CSTTCHHHHHHHT-TSSEEEEGGG-GSCGGGSCBSTTSCBCCCGGGSHHH--HHHHHHHHHHHH
T ss_pred HHHHcCCEEEEcCCC-cHHHHHHHHHhcc-CCCeEEEeec-CcccccccccCCCCCCCceeCCHHH--HHHHHHHHHHHH
Confidence 457999999988763 7888888888876 444 443321 211 11110 01123444444 667777777777
Q ss_pred h--CHHHHHHHHHHHHHHHHH
Q 012132 425 T--HVERRLTMGKRGYERVKE 443 (470)
Q Consensus 425 ~--~~~~~~~~~~~a~~~~~~ 443 (470)
. ||+-.....+|+.++..+
T Consensus 158 ~~~DP~~a~~Y~~N~~~~~~~ 178 (313)
T 1toa_A 158 CKLLPGKTREFTQRYQAYQQQ 178 (313)
T ss_dssp HHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHChhhHHHHHHHHHHHHHH
Confidence 6 788777777777776644
No 465
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=35.32 E-value=53 Score=29.47 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=26.0
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
.++.|+||+.. |....-..+++.|.++||+|.++..
T Consensus 8 ~~~~~~vlVTG------atG~iG~~l~~~L~~~g~~V~~~~r 43 (342)
T 1y1p_A 8 LPEGSLVLVTG------ANGFVASHVVEQLLEHGYKVRGTAR 43 (342)
T ss_dssp SCTTCEEEEET------TTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCEEEEEC------CccHHHHHHHHHHHHCCCEEEEEeC
Confidence 34567777653 3345667788899999999998874
No 466
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=35.22 E-value=1.4e+02 Score=25.37 Aligned_cols=24 Identities=13% Similarity=-0.190 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHhCCceEEEEecC
Q 012132 90 PLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 90 ~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
.-.-..+++.|.++|++|.+....
T Consensus 23 ~giG~~ia~~l~~~G~~v~~~~~~ 46 (256)
T 3ezl_A 23 GGIGTSICQRLHKDGFRVVAGCGP 46 (256)
T ss_dssp SHHHHHHHHHHHHTTEEEEEEECT
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCC
Confidence 345678899999999999887743
No 467
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=35.21 E-value=1.7e+02 Score=27.74 Aligned_cols=72 Identities=17% Similarity=0.168 Sum_probs=42.1
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcC-C
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK-A 151 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 151 (470)
+.+||+++.- ||... ..|+.|.++||+|++.-...... . .....+...|+.+..-....... .. +
T Consensus 8 ~~k~v~viG~----G~sG~---s~A~~l~~~G~~V~~~D~~~~~~-~----~~~~~L~~~gi~~~~g~~~~~~~--~~~~ 73 (451)
T 3lk7_A 8 ENKKVLVLGL----ARSGE---AAARLLAKLGAIVTVNDGKPFDE-N----PTAQSLLEEGIKVVCGSHPLELL--DEDF 73 (451)
T ss_dssp TTCEEEEECC----TTTHH---HHHHHHHHTTCEEEEEESSCGGG-C----HHHHHHHHTTCEEEESCCCGGGG--GSCE
T ss_pred CCCEEEEEee----CHHHH---HHHHHHHhCCCEEEEEeCCcccC-C----hHHHHHHhCCCEEEECCChHHhh--cCCC
Confidence 4578988873 22223 24899999999999975432111 1 12345556788776433222111 24 8
Q ss_pred cEEEEcc
Q 012132 152 DLIVLNT 158 (470)
Q Consensus 152 DiV~~~~ 158 (470)
|+|+...
T Consensus 74 d~vv~sp 80 (451)
T 3lk7_A 74 CYMIKNP 80 (451)
T ss_dssp EEEEECT
T ss_pred CEEEECC
Confidence 9888765
No 468
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=35.19 E-value=82 Score=31.71 Aligned_cols=77 Identities=13% Similarity=0.041 Sum_probs=40.7
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchh-HHHhhhhhhhhcceeeEecCCh-----hhHHhh
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE-VIYSLEHKMWDRGVQVISAKGQ-----ETINTA 148 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 148 (470)
|||+|+.+. .+...-.++|.+.||+|..+...++..... ..........+.|++++..... ....+.
T Consensus 1 ~ri~~~~s~-------~~~~~~l~~l~~~~~~i~~v~t~~~~~~~~~~~~~~~~~a~~~~ip~~~~~~~~~~~~~~~l~~ 73 (660)
T 1z7e_A 1 MKTVVFAYH-------DMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQ 73 (660)
T ss_dssp CEEEEEECH-------HHHHHHHHHHHHTTCEEEEEECCCC--------CCHHHHHHHHTCCEECCSCTTSHHHHHHHHH
T ss_pred CEEEEEEeC-------HHHHHHHHHHHhCCCCEEEEEeCCCCCccCcCccHHHHHHHHcCCCEeccCCCCcHHHHHHHHh
Confidence 578877642 233333555666689987766544332110 0011344455677777654432 233456
Q ss_pred cCCcEEEEcc
Q 012132 149 LKADLIVLNT 158 (470)
Q Consensus 149 ~~~DiV~~~~ 158 (470)
.+||+|++-.
T Consensus 74 ~~~d~iv~~~ 83 (660)
T 1z7e_A 74 LSPDVIFSFY 83 (660)
T ss_dssp HCCSEEEEES
T ss_pred cCCCEEEEcC
Confidence 7888887754
No 469
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=35.12 E-value=40 Score=30.20 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=28.3
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
++||+++.+... +.......++.+.|.++|++|.+...
T Consensus 4 m~ki~iI~n~~~-~~~~~~~~~l~~~L~~~g~~v~~~~~ 41 (307)
T 1u0t_A 4 HRSVLLVVHTGR-DEATETARRVEKVLGDNKIALRVLSA 41 (307)
T ss_dssp -CEEEEEESSSG-GGGSHHHHHHHHHHHTTTCEEEEEC-
T ss_pred CCEEEEEEeCCC-HHHHHHHHHHHHHHHHCCCEEEEecc
Confidence 468999987544 23356789999999999999887653
No 470
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=35.08 E-value=31 Score=29.80 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=28.7
Q ss_pred ccEEEEEeeccCCCch--hHHHHHHHHHHHhCCceEEEEecCC
Q 012132 74 SKLVLLVSHELSLSGG--PLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~--~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
+|||+.+++ ..||. ...+.+||..|+++|+.|.++-.+.
T Consensus 5 ~~~vI~v~s--~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 45 (257)
T 1wcv_1 5 KVRRIALAN--QKGGVGKTTTAINLAAYLARLGKRVLLVDLDP 45 (257)
T ss_dssp CCCEEEECC--SSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCEEEEEEe--CCCCchHHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 456666654 33454 5789999999999999999987543
No 471
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=35.05 E-value=1.2e+02 Score=28.50 Aligned_cols=71 Identities=14% Similarity=0.104 Sum_probs=44.9
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChh--hHHh--hc
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE--TINT--AL 149 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~ 149 (470)
+++|+++. ..++-..+++.|.+.|++|+++-.... ....+...|+.++.-...+ .+.. ..
T Consensus 4 ~~~viIiG-------~Gr~G~~va~~L~~~g~~vvvId~d~~---------~v~~~~~~g~~vi~GDat~~~~L~~agi~ 67 (413)
T 3l9w_A 4 GMRVIIAG-------FGRFGQITGRLLLSSGVKMVVLDHDPD---------HIETLRKFGMKVFYGDATRMDLLESAGAA 67 (413)
T ss_dssp CCSEEEEC-------CSHHHHHHHHHHHHTTCCEEEEECCHH---------HHHHHHHTTCCCEESCTTCHHHHHHTTTT
T ss_pred CCeEEEEC-------CCHHHHHHHHHHHHCCCCEEEEECCHH---------HHHHHHhCCCeEEEcCCCCHHHHHhcCCC
Confidence 45677765 237888999999999999999974422 1223345567666543322 2222 35
Q ss_pred CCcEEEEcccc
Q 012132 150 KADLIVLNTAV 160 (470)
Q Consensus 150 ~~DiV~~~~~~ 160 (470)
+.|+|++..+.
T Consensus 68 ~A~~viv~~~~ 78 (413)
T 3l9w_A 68 KAEVLINAIDD 78 (413)
T ss_dssp TCSEEEECCSS
T ss_pred ccCEEEECCCC
Confidence 78988876644
No 472
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=35.02 E-value=38 Score=32.19 Aligned_cols=33 Identities=9% Similarity=0.186 Sum_probs=25.2
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
++|||++.. + .....+++++++.|++|.++...
T Consensus 2 ~k~ilI~g~------g-~~~~~~~~a~~~~G~~vv~v~~~ 34 (449)
T 2w70_A 2 LDKIVIANR------G-EIALRILRACKELGIKTVAVHSS 34 (449)
T ss_dssp CSEEEECCC------H-HHHHHHHHHHHHHTCEEEEEEEG
T ss_pred CceEEEeCC------c-HHHHHHHHHHHHcCCeEEEEecc
Confidence 468888762 2 35667999999999999988643
No 473
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=34.96 E-value=68 Score=29.42 Aligned_cols=81 Identities=12% Similarity=-0.023 Sum_probs=42.5
Q ss_pred cccccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhh
Q 012132 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTA 148 (470)
Q Consensus 69 ~~~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (470)
..+|+++||.+|... .. ....++..+...|.++.-++...... ........+.. ........++..
T Consensus 21 ~~Mm~~irvgiiG~G----~~--~~~~~~~~~~~~~~~lvav~d~~~~~-------a~~~a~~~~~~-~~~~~~~~ll~~ 86 (361)
T 3u3x_A 21 QSMMDELRFAAVGLN----HN--HIYGQVNCLLRAGARLAGFHEKDDAL-------AAEFSAVYADA-RRIATAEEILED 86 (361)
T ss_dssp -----CCEEEEECCC----ST--THHHHHHHHHHTTCEEEEEECSCHHH-------HHHHHHHSSSC-CEESCHHHHHTC
T ss_pred hhhccCcEEEEECcC----HH--HHHHHHHHhhcCCcEEEEEEcCCHHH-------HHHHHHHcCCC-cccCCHHHHhcC
Confidence 345677899999942 11 12334555556788887777433211 11112223321 122345666666
Q ss_pred cCCcEEEEcccchhh
Q 012132 149 LKADLIVLNTAVAGK 163 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~ 163 (470)
.++|+|++.++...+
T Consensus 87 ~~vD~V~I~tp~~~H 101 (361)
T 3u3x_A 87 ENIGLIVSAAVSSER 101 (361)
T ss_dssp TTCCEEEECCCHHHH
T ss_pred CCCCEEEEeCChHHH
Confidence 789999998876544
No 474
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=34.95 E-value=1.1e+02 Score=27.56 Aligned_cols=77 Identities=8% Similarity=0.046 Sum_probs=43.2
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHH-h-CCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcC
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLR-G-VGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~-~-~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (470)
|++||.+|.. | ......++.|. + .|+++..++..... .........++..........+....+
T Consensus 1 M~~rigiIG~-----G--~~g~~~~~~l~~~~~~~~l~av~d~~~~-------~~~~~~~~~g~~~~~~~~~~~ll~~~~ 66 (344)
T 3mz0_A 1 MSLRIGVIGT-----G--AIGKEHINRITNKLSGAEIVAVTDVNQE-------AAQKVVEQYQLNATVYPNDDSLLADEN 66 (344)
T ss_dssp CCEEEEEECC-----S--HHHHHHHHHHHHTCSSEEEEEEECSSHH-------HHHHHHHHTTCCCEEESSHHHHHHCTT
T ss_pred CeEEEEEECc-----c--HHHHHHHHHHHhhCCCcEEEEEEcCCHH-------HHHHHHHHhCCCCeeeCCHHHHhcCCC
Confidence 3578999874 2 23334566676 4 46777665533211 112222334432233445666777778
Q ss_pred CcEEEEcccchhh
Q 012132 151 ADLIVLNTAVAGK 163 (470)
Q Consensus 151 ~DiV~~~~~~~~~ 163 (470)
+|+|++.++...+
T Consensus 67 ~D~V~i~tp~~~h 79 (344)
T 3mz0_A 67 VDAVLVTSWGPAH 79 (344)
T ss_dssp CCEEEECSCGGGH
T ss_pred CCEEEECCCchhH
Confidence 9999998866543
No 475
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=34.85 E-value=60 Score=28.58 Aligned_cols=77 Identities=13% Similarity=0.042 Sum_probs=44.9
Q ss_pred ecccCC-CHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcC--hHHHHHHHHHHHh-cCCCCcEE-EecccCCHHH
Q 012132 278 SVSRGK-GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ--TKFESELRNYVMQ-KKIQDRVH-FVNKTLTVAP 352 (470)
Q Consensus 278 rl~~~K-g~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~--~~~~~~l~~~~~~-~~l~~~V~-~~g~~~~~~~ 352 (470)
-++|.| ..+.+.+.++.+.+ ...-.+++| ...-. .+...++.+.+++ .+++ -|. |.....+...
T Consensus 44 liDPdK~~~~~~~~~~~~~~~---------sGtDai~VG-S~~vt~~~~~~~~~v~~ik~~~~lP-vil~fPP~~g~~~~ 112 (286)
T 3vk5_A 44 IIDPFKVPVTEAVEKAAELTR---------LGFAAVLLA-STDYESFESHMEPYVAAVKAATPLP-VVLHFPPRPGAGFP 112 (286)
T ss_dssp EECTTTSCHHHHHHHHHHHHH---------TTCSCEEEE-CSCCSSHHHHHHHHHHHHHHHCSSC-EEEECCCBTTTBSC
T ss_pred EECCCCCCcHHHHHHHHHHHh---------cCCCEEEEc-cCCCCcchHHHHHHHHHHHHhCCCC-EEEECCCCCCCccc
Confidence 458888 45555556665543 334567888 32222 2345555555565 7776 444 7722222334
Q ss_pred HHHhcCEEEEccC
Q 012132 353 YLAAIDVLVQNSQ 365 (470)
Q Consensus 353 ~~~~aDv~v~pS~ 365 (470)
+...+|.+++||.
T Consensus 113 i~~~aDa~l~psv 125 (286)
T 3vk5_A 113 VVRGADALLLPAL 125 (286)
T ss_dssp CCTTCSEEEEEEE
T ss_pred cccCCCEEEEEEE
Confidence 4568999999987
No 476
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=34.78 E-value=61 Score=26.85 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=26.0
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhC-CceEEEEecC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~-G~~V~v~~~~ 113 (470)
|||++-.+.. .+.....++++.|.+. |++|+++...
T Consensus 1 ~~IllgvTGs---iaa~k~~~ll~~L~~~~g~~V~vv~T~ 37 (197)
T 1sbz_A 1 MKLIVGMTGA---TGAPLGVALLQALREMPNVETHLVMSK 37 (197)
T ss_dssp CEEEEEECSS---SCHHHHHHHHHHHHTCTTCEEEEEECH
T ss_pred CEEEEEEeCh---HHHHHHHHHHHHHHhccCCEEEEEECc
Confidence 4666655321 1246789999999999 9999998754
No 477
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus}
Probab=34.52 E-value=1.3e+02 Score=23.78 Aligned_cols=84 Identities=12% Similarity=0.014 Sum_probs=41.1
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHh-CC--ceEEEEecCCCC--CchhHHHhhhhhhhhcceeeE-ecCChhhHH
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRG-VG--TKVNWITIQKPS--EEDEVIYSLEHKMWDRGVQVI-SAKGQETIN 146 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~-~G--~~V~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 146 (470)
+++|||||+..-. .-+..+..+.+.+.. .| ..+.+.+..-.. ............+.+.|+.+- ..+.... .
T Consensus 3 ~~~~VLFVC~gN~--cRSpmAEal~~~~~~~~gl~~~~~v~SAGt~~~~~g~~~~p~a~~~l~e~Gid~s~~ar~l~~-~ 79 (161)
T 2cwd_A 3 RPVRVLFVCLGNI--CRSPMAEGIFRKLLKERGLEDRFEVDSAGTGAWHVGEPMDPRARRVLEEEGAYFPHVARRLTR-E 79 (161)
T ss_dssp CCEEEEEEESSSS--SHHHHHHHHHHHHHHHHTCTTTEEEEEEESSCTTTTCCCCHHHHHHHHHHTCCCCCCCCBCCH-H
T ss_pred CCCEEEEECCCcH--HHHHHHHHHHHHHHHHcCCCCcEEEEecccCCCccCCCCCHHHHHHHHHcCcCccccccCCCH-h
Confidence 4579999996421 113445555555543 24 245666521111 001111123445566777663 2222221 1
Q ss_pred hhcCCcEEEEccc
Q 012132 147 TALKADLIVLNTA 159 (470)
Q Consensus 147 ~~~~~DiV~~~~~ 159 (470)
....+|+|++-+.
T Consensus 80 ~~~~~DlIi~M~~ 92 (161)
T 2cwd_A 80 DVLAYDHILVMDR 92 (161)
T ss_dssp HHHHCSEEEESSH
T ss_pred HhccCCEEEECCh
Confidence 2246999999864
No 478
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=34.47 E-value=1.4e+02 Score=27.17 Aligned_cols=68 Identities=12% Similarity=0.101 Sum_probs=44.0
Q ss_pred CCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhcCC
Q 012132 306 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQL 383 (470)
Q Consensus 306 ~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~ 383 (470)
.++++++-+-+.. .+..+ .+++.+.. ...++.++++ ..|+++..+- ...-.-.+.+|+..|+
T Consensus 27 ~~~~~l~av~d~~------~~~~~-~a~~~g~~-------~~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGk 90 (359)
T 3e18_A 27 ADNLEVHGVFDIL------AEKRE-AAAQKGLK-------IYESYEAVLADEKVDAVLIATP--NDSHKELAISALEAGK 90 (359)
T ss_dssp STTEEEEEEECSS------HHHHH-HHHTTTCC-------BCSCHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTC
T ss_pred CCCcEEEEEEcCC------HHHHH-HHHhcCCc-------eeCCHHHHhcCCCCCEEEEcCC--cHHHHHHHHHHHHCCC
Confidence 3788887655542 22222 34555531 1267888887 7899998776 4444455678999999
Q ss_pred CEEecC
Q 012132 384 PVLGTA 389 (470)
Q Consensus 384 PvI~s~ 389 (470)
+|++-.
T Consensus 91 hVl~EK 96 (359)
T 3e18_A 91 HVVCEK 96 (359)
T ss_dssp EEEEES
T ss_pred CEEeeC
Confidence 999743
No 479
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=34.30 E-value=65 Score=27.68 Aligned_cols=43 Identities=7% Similarity=-0.021 Sum_probs=29.3
Q ss_pred cccEEEEEeeccC-CCch-hHHHHHHHHHHHhCCceEEEEecCCC
Q 012132 73 KSKLVLLVSHELS-LSGG-PLLLMELAFLLRGVGTKVNWITIQKP 115 (470)
Q Consensus 73 ~~~kIl~v~~~~~-~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (470)
|++||+++..... ..|. ..-+..-...|++.|++|++++...+
T Consensus 22 M~kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g 66 (242)
T 3l3b_A 22 MALNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKN 66 (242)
T ss_dssp --CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSB
T ss_pred ccCEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCC
Confidence 4578999886322 2444 34455667888899999999997654
No 480
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=34.29 E-value=1e+02 Score=27.76 Aligned_cols=68 Identities=3% Similarity=-0.049 Sum_probs=43.3
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhcCCC
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (470)
++++++-+-+.. .+..++++++++.. . ...++.++++ ..|+++..+- ...-.-.+.+|+..|++
T Consensus 27 ~~~~lvav~d~~------~~~~~~~a~~~~~~---~---~~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGkh 92 (336)
T 2p2s_A 27 AGAELAGVFESD------SDNRAKFTSLFPSV---P---FAASAEQLITDASIDLIACAVI--PCDRAELALRTLDAGKD 92 (336)
T ss_dssp TTCEEEEEECSC------TTSCHHHHHHSTTC---C---BCSCHHHHHTCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEeCCC------HHHHHHHHHhcCCC---c---ccCCHHHHhhCCCCCEEEEeCC--hhhHHHHHHHHHHCCCc
Confidence 678876555532 22334555655321 1 1267888886 5899888776 44444556789999999
Q ss_pred EEec
Q 012132 385 VLGT 388 (470)
Q Consensus 385 vI~s 388 (470)
|++-
T Consensus 93 Vl~E 96 (336)
T 2p2s_A 93 FFTA 96 (336)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9984
No 481
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Probab=34.28 E-value=46 Score=30.59 Aligned_cols=33 Identities=21% Similarity=0.095 Sum_probs=23.9
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|+||+.. |....-..+++.|.+.||+|.++...
T Consensus 29 k~vlVtG------atG~IG~~l~~~L~~~g~~V~~~~r~ 61 (381)
T 1n7h_A 29 KIALITG------ITGQDGSYLTEFLLGKGYEVHGLIRR 61 (381)
T ss_dssp CEEEEET------TTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CeEEEEc------CCchHHHHHHHHHHHCCCEEEEEecC
Confidence 5666543 33456677888999999999998754
No 482
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=40.51 E-value=8.5 Score=32.18 Aligned_cols=39 Identities=10% Similarity=0.040 Sum_probs=27.3
Q ss_pred cccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEE-ec
Q 012132 73 KSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWI-TI 112 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~-~~ 112 (470)
.+|||+++..+...+|. ...+..+++.+.+ |++|.++ -.
T Consensus 5 ~~mkIliI~gS~r~~s~t~~la~~~~~~~~~-g~~v~~i~dl 45 (199)
T 3s2y_A 5 SPLHFVTLLGSLRKASFNAAVARALPEIAPE-GIAITPLGSI 45 (199)
Confidence 46899999876655444 4556666666665 8999888 53
No 483
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=34.23 E-value=51 Score=29.34 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=31.3
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
.+||+.|++.-+-.|-.....+||..|++.|..|.++-.+.
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 45777777644444557899999999999999999987543
No 484
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=34.19 E-value=37 Score=30.21 Aligned_cols=33 Identities=12% Similarity=-0.037 Sum_probs=23.9
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
.|+|++.. |....-..+++.|.++||+|.++..
T Consensus 2 ~~~vlVtG------atG~iG~~l~~~L~~~g~~V~~~~r 34 (315)
T 2ydy_A 2 NRRVLVTG------ATGLLGRAVHKEFQQNNWHAVGCGF 34 (315)
T ss_dssp CCEEEEET------TTSHHHHHHHHHHHTTTCEEEEEC-
T ss_pred CCeEEEEC------CCcHHHHHHHHHHHhCCCeEEEEcc
Confidence 46776653 3345667788999999999998873
No 485
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=34.17 E-value=3.3e+02 Score=26.38 Aligned_cols=163 Identities=9% Similarity=0.048 Sum_probs=84.9
Q ss_pred cceeeeeh-hhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccC
Q 012132 204 AGAMIDSH-VTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRG 282 (470)
Q Consensus 204 ~~~~~~s~-~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~ 282 (470)
+.+++.+. ...+.++++..-...++.+.+.-+++ +|.-.-.|. ....+...+.+.++++++.. .
T Consensus 208 dilvcRs~~~l~~~~r~KiaLfc~V~~~~VI~i~D-vdtiY~vpl--~L~~qGl~~~~~~~l~l~~~------------~ 272 (535)
T 3nva_A 208 DFIVGRATLPLDDETRRKIALFTNVKVDHIVSSYD-VETSYEVPI--ILESQKLVSKILSRLKLEDR------------Q 272 (535)
T ss_dssp SEEEEEESSCCCHHHHHHHHHHTTCCGGGEEEEEC-CSCGGGHHH--HHHHHTHHHHHHHHTTCCCC------------C
T ss_pred CEEEEecCCCCCHHHHHhhhhhcCCChhceEecCC-CChHHHhHH--HHHHCCcHHHHHHHcCCCCC------------C
Confidence 33444333 34466677766666777777666664 443322221 11112224567788888532 1
Q ss_pred CCHHHHHHHHHHHHHHHH--hhcccCCceEEEEEeCCCCcChHHHH---HHHHHHHhcCCCCcEEEeccc--CC--H--H
Q 012132 283 KGQDLFLHSFYESLELIK--EKKLEVPSVHAVIIGSDMNAQTKFES---ELRNYVMQKKIQDRVHFVNKT--LT--V--A 351 (470)
Q Consensus 283 Kg~~~ll~a~~~l~~~l~--~~~~~~~~~~l~ivG~g~~~~~~~~~---~l~~~~~~~~l~~~V~~~g~~--~~--~--~ 351 (470)
..+ ..+..+.+.+. + ....+++.++|.-.+-.+.|.. .|+.....++..-++.+.... ++ . .
T Consensus 273 ~~~----~~w~~~~~~~~~~~---~~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~ 345 (535)
T 3nva_A 273 VDL----TDWISFVNNIKGIN---SKKTINIALVGKYTKLKDSYISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLN 345 (535)
T ss_dssp CCC----HHHHHHHHHHHTTT---CCCEEEEEEEESCTTSGGGGHHHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCT
T ss_pred CCH----HHHHHHHHHhhccC---CCCeeEEEEEecCcCCchhHHHHHHHHHHHHHHcCCCeEEEEecchhccccccchh
Confidence 122 23333333222 1 1246899999986443334444 334444445544455665542 11 1 4
Q ss_pred HHHHhcCEEEEccCCc---ccccchHHHHHHhcCCCEEec
Q 012132 352 PYLAAIDVLVQNSQAW---GECFGRITIEAMAFQLPVLGT 388 (470)
Q Consensus 352 ~~~~~aDv~v~pS~~~---~E~~g~~~lEAma~G~PvI~s 388 (470)
+.+..+|.+++|.-+. .++.-..+-+|...|+|+++.
T Consensus 346 ~~L~~~DgIIlpGG~G~~~~~g~i~~ir~a~~~~~PiLGI 385 (535)
T 3nva_A 346 EILGNVNGIIVLPGFGSRGAEGKIKAIKYAREHNIPFLGI 385 (535)
T ss_dssp TTTTSCSEEEECCCCSSTTHHHHHHHHHHHHHHTCCEEEE
T ss_pred hhccCCCEEEECCCCCCccHHHHHHHHHHHHHcCCcEEEE
Confidence 6788999999987420 111112334666789999875
No 486
>2l17_A Synarsc, arsenate reductase; alpha/beta sandwich, oxidoreductase; NMR {Synechocystis} PDB: 2l18_A 2l19_A
Probab=34.17 E-value=1.1e+02 Score=23.30 Aligned_cols=77 Identities=18% Similarity=0.104 Sum_probs=38.7
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEe--cCChhhHHhhcCC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS--AKGQETINTALKA 151 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 151 (470)
|+|||||+..- ..-+..+..+.+.+... .+.+.+..-.. ..........+.+.|+.+-. .+..... ....+
T Consensus 4 m~~VLFVC~gN--~cRSpmAEa~~~~~~~~--~~~v~SAGt~g--~~~~~~a~~~l~e~Gid~s~~~sr~l~~~-~~~~~ 76 (134)
T 2l17_A 4 MKKVMFVCKRN--SCRSQMAEGFAKTLGAG--KIAVTSCGLES--SRVHPTAIAMMEEVGIDISGQTSDPIENF-NADDY 76 (134)
T ss_dssp CEEEEEECCSS--THHHHHHHHHHHHHSBT--TEEEEEECCTT--SSCCHHHHHHHHTTTCCCSSCCCCCGGGC-CGGGC
T ss_pred CCEEEEEeCCc--hHHHHHHHHHHHHHcCC--CEEEEcccCCC--CCCCHHHHHHHHHcCCCcccCccccCChH-HhccC
Confidence 35999999632 11134555566665543 35555522111 11111234556677887632 2222211 12468
Q ss_pred cEEEEc
Q 012132 152 DLIVLN 157 (470)
Q Consensus 152 DiV~~~ 157 (470)
|+|++-
T Consensus 77 DlIi~m 82 (134)
T 2l17_A 77 DVVISL 82 (134)
T ss_dssp SEEEEC
T ss_pred CEEEEe
Confidence 999988
No 487
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=34.07 E-value=33 Score=32.01 Aligned_cols=35 Identities=14% Similarity=0.084 Sum_probs=25.4
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
+|+++|||++... +. ...+++++++.|++|.++..
T Consensus 4 m~~~~~ilI~g~g------~~-~~~~~~a~~~~G~~~v~v~~ 38 (403)
T 4dim_A 4 MYDNKRLLILGAG------RG-QLGLYKAAKELGIHTIAGTM 38 (403)
T ss_dssp --CCCEEEEECCC------GG-GHHHHHHHHHHTCEEEEEEC
T ss_pred ccCCCEEEEECCc------Hh-HHHHHHHHHHCCCEEEEEcC
Confidence 3567899998642 22 45689999999999999864
No 488
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=33.98 E-value=27 Score=32.08 Aligned_cols=38 Identities=13% Similarity=-0.061 Sum_probs=26.2
Q ss_pred ccccEEEEEeeccCCCchh-----HHHHHHHHHHHhCCceEEEEec
Q 012132 72 MKSKLVLLVSHELSLSGGP-----LLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~-----~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
|+++||+++....+ .| +...+.+++|.+.||+|..+..
T Consensus 1 M~kkkv~vl~GG~S---~E~evSl~Sa~~v~~aL~~~gy~v~~i~i 43 (357)
T 4fu0_A 1 MQNKKIAVIFGGNS---TEYEVSLQSASAVFENINTNKFDIIPIGI 43 (357)
T ss_dssp -CCEEEEEEEECSS---TTHHHHHHHHHHHHHHSCTTTEEEEEEEE
T ss_pred CCCCEEEEEECCCc---cchHHHHHHHHHHHHHHhHhCCEEEEEEE
Confidence 67889999863211 12 2345678999999999988863
No 489
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=33.96 E-value=49 Score=28.74 Aligned_cols=23 Identities=22% Similarity=-0.010 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHhCCceEEEEec
Q 012132 90 PLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 90 ~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
.-.-..+++.|.+.|++|.++..
T Consensus 31 ~gIG~~ia~~l~~~G~~V~~~~r 53 (267)
T 1vl8_A 31 RGLGFGIAQGLAEAGCSVVVASR 53 (267)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEES
T ss_pred CHHHHHHHHHHHHCCCEEEEEeC
Confidence 34567889999999999988764
No 490
>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate binding, hydrolase; NMR {Escherichia coli K12}
Probab=33.81 E-value=1.3e+02 Score=23.97 Aligned_cols=81 Identities=9% Similarity=-0.131 Sum_probs=39.7
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCC-CCchhHHHhhhhhhhhcceeeEe--cCChhhHHhhcC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP-SEEDEVIYSLEHKMWDRGVQVIS--AKGQETINTALK 150 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 150 (470)
++|||||+..- ..-+..+..+.+.+.. + +.+.+..-. .............+.+.|+.+-. .+..... ....
T Consensus 22 m~~VLFVCtgN--~cRSpmAEal~r~~~~-~--~~v~SAGt~~~~g~~~~p~a~~vl~e~Gid~s~~~sr~l~~~-~~~~ 95 (167)
T 2fek_A 22 FNNILVVCVGN--ICRSPTAERLLQRYHP-E--LKVESAGLGALVGKGADPTAISVAAEHQLSLEGHCARQISRR-LCRN 95 (167)
T ss_dssp CCEEEEEESSS--SSHHHHHHHHHHHHCT-T--CEEEEEETTCCTTCCCCHHHHHHHHHTTCCCTTCCCCBCCHH-HHHH
T ss_pred cCeEEEEcCCc--HHHHHHHHHHHHHhcC-C--eEEEeeecCCCCCCCCCHHHHHHHHHcCCCccCCcCccCCHH-Hhcc
Confidence 46999999632 1123455556665543 3 444442111 11111111234456677877632 2222222 1246
Q ss_pred CcEEEEcccc
Q 012132 151 ADLIVLNTAV 160 (470)
Q Consensus 151 ~DiV~~~~~~ 160 (470)
+|+|++-+..
T Consensus 96 ~DlIitM~~~ 105 (167)
T 2fek_A 96 YDLILTMEKR 105 (167)
T ss_dssp SSEEEESCHH
T ss_pred CCEEEEcCHH
Confidence 8999998643
No 491
>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*
Probab=33.78 E-value=34 Score=31.46 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=24.9
Q ss_pred cccc-EEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEec
Q 012132 72 MKSK-LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 72 ~~~~-kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
||+| ||+|+.. | ..-..++..|.+.||+|+++..
T Consensus 12 ~m~M~kI~iIG~-----G--~mG~~la~~L~~~G~~V~~~~r 46 (366)
T 1evy_A 12 LLYLNKAVVFGS-----G--AFGTALAMVLSKKCREVCVWHM 46 (366)
T ss_dssp CCCEEEEEEECC-----S--HHHHHHHHHHTTTEEEEEEECS
T ss_pred hhccCeEEEECC-----C--HHHHHHHHHHHhCCCEEEEEEC
Confidence 4444 9999863 2 4556778889999999998853
No 492
>2qs7_A Uncharacterized protein; putative oxidoreductase of the DSRE/DSRF-like family, struct genomics, joint center for structural genomics; HET: MSE EPE; 2.09A {Sulfolobus solfataricus P2}
Probab=33.66 E-value=51 Score=25.61 Aligned_cols=39 Identities=13% Similarity=0.020 Sum_probs=27.1
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
++|++++.+...+. -......++...++.|++|.++...
T Consensus 7 ~~kl~II~~sg~~d-~~~~a~~lA~~Aaa~g~eV~iF~t~ 45 (144)
T 2qs7_A 7 KKKLSIIVFSGTID-KLMPVGILTSGAAASGYEVNLFFTF 45 (144)
T ss_dssp CCEEEEEECCCSHH-HHHHHHHHHHHHHHTTCEEEEEECH
T ss_pred cCCEEEEEEcCCHH-HHHHHHHHHHHHHHcCCcEEEEEeh
Confidence 45777777654321 1245777888888899999999743
No 493
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=33.47 E-value=74 Score=28.48 Aligned_cols=88 Identities=9% Similarity=0.030 Sum_probs=53.1
Q ss_pred HHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeee-----cC--ceeeeecCCCCChHHHHHHHHHH
Q 012132 351 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVV-----NG--TTGLLHPVGKEGITPLAKNIVKL 423 (470)
Q Consensus 351 ~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~-----~~--~~G~l~~~~d~~~~~la~~i~~l 423 (470)
..-++.||++|..... .|+|--.+++... +.++|.... |+..+-. ++ .--+..++.+ ...+++.|.+.
T Consensus 75 ~~~l~~ADlvv~nG~~-lE~wl~k~~~~~~-~~~~v~~s~-gi~~~~~~~~~~~~~~DPHvWldp~n--~~~~a~~I~~~ 149 (307)
T 3ujp_A 75 IVKAQDADLILYNGMN-LERWFEQFLGNVK-DVPSVVLTE-GIEPIPIADGPYTDKPNPHAWMSPRN--ALVYVENIRQA 149 (307)
T ss_dssp HHHHHHCSEEEECCTT-SSTTHHHHHHTSC-SCCEEETTT-TCCCCBCCSSSSTTSBCCCCTTCHHH--HHHHHHHHHHH
T ss_pred HHHHhcCCEEEEcCCC-hHHHHHHHHHhCC-CCCEEEeeC-CccccccccccCCCCCCCCcCCCHHH--HHHHHHHHHHH
Confidence 4567889999988763 7877777777653 456654432 2221110 00 1113444444 66777777777
Q ss_pred Hh--CHHHHHHHHHHHHHHHHH
Q 012132 424 AT--HVERRLTMGKRGYERVKE 443 (470)
Q Consensus 424 l~--~~~~~~~~~~~a~~~~~~ 443 (470)
|. ||+......+|+.++..+
T Consensus 150 L~~~DP~~a~~Y~~Na~~~~~~ 171 (307)
T 3ujp_A 150 FVELDPDNAKYYNANAAVYSEQ 171 (307)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHhCchhHHHHHHHHHHHHHH
Confidence 76 788777777777776644
No 494
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=33.35 E-value=47 Score=29.23 Aligned_cols=33 Identities=18% Similarity=0.041 Sum_probs=25.0
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
|+.+||.++. +...-..++..|.+.||+|.++.
T Consensus 2 m~~~kV~VIG-------aG~mG~~iA~~la~~G~~V~l~d 34 (283)
T 4e12_A 2 TGITNVTVLG-------TGVLGSQIAFQTAFHGFAVTAYD 34 (283)
T ss_dssp CSCCEEEEEC-------CSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCEEEEEC-------CCHHHHHHHHHHHhCCCeEEEEe
Confidence 4457899884 22466778899999999998875
No 495
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=33.33 E-value=1.4e+02 Score=28.39 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=0.0
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCC
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (470)
.+.++|+++ |+.......++.|.+.|.+|+|+...... .+.......++.++.......... ..
T Consensus 10 l~~~~vlVv-------GgG~va~~k~~~L~~~ga~V~vi~~~~~~-------~~~~l~~~~~i~~~~~~~~~~~l~--~~ 73 (457)
T 1pjq_A 10 LRDRDCLIV-------GGGDVAERKARLLLEAGARLTVNALTFIP-------QFTVWANEGMLTLVEGPFDETLLD--SC 73 (457)
T ss_dssp CBTCEEEEE-------CCSHHHHHHHHHHHHTTBEEEEEESSCCH-------HHHHHHTTTSCEEEESSCCGGGGT--TC
T ss_pred CCCCEEEEE-------CCCHHHHHHHHHHHhCcCEEEEEcCCCCH-------HHHHHHhcCCEEEEECCCCccccC--Cc
Q ss_pred cEEEEcc
Q 012132 152 DLIVLNT 158 (470)
Q Consensus 152 DiV~~~~ 158 (470)
|+|+..+
T Consensus 74 ~lVi~at 80 (457)
T 1pjq_A 74 WLAIAAT 80 (457)
T ss_dssp SEEEECC
T ss_pred cEEEEcC
No 496
>2z1d_A Hydrogenase expression/formation protein HYPD; [NIFE] hydrogenase maturation, [4Fe-4S] cluster, thiol redox binding protein; HET: CSW; 2.07A {Thermococcus kodakarensis}
Probab=33.33 E-value=75 Score=28.97 Aligned_cols=83 Identities=14% Similarity=0.205 Sum_probs=55.0
Q ss_pred cCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc----CCHHHHHH---hcCEEEEccCCcccccchHHHH
Q 012132 305 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT----LTVAPYLA---AIDVLVQNSQAWGECFGRITIE 377 (470)
Q Consensus 305 ~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~----~~~~~~~~---~aDv~v~pS~~~~E~~g~~~lE 377 (470)
++|+-++++.|-|-+.-.|-....-..+++.++. |+.++-.. .-+..++. ..|.|+.|++- .--.|....|
T Consensus 136 ~nP~k~VVFfaiGFETTaP~tA~~i~~a~~~~l~-Nfsvl~~h~l~pPa~~all~~~~~idgfi~PGHV-stIiG~~~y~ 213 (372)
T 2z1d_A 136 ENPDKTVVHFSPGFETTTAPAAGMLNVAAQEELE-NFKIYSVHRLTPPAVEVLLKQGTVFQGLIAPGHV-STIIGVKGWE 213 (372)
T ss_dssp HCTTSEEEEEEEECHHHHHHHHHHHHHHHHHTCS-SEEEEEEEECHHHHHHHHHHTSCCCSEEEEEHHH-HHHHTTHHHH
T ss_pred HCCCCeEEEEeeChhhccHHHHHHHHHHHHcCCC-CEEEEEeccccHHHHHHHHcCCCcCcEEEecCee-eEEeccchhH
Confidence 3588888888888655445555555557777875 66665542 44555555 37999999873 3335666666
Q ss_pred HH--hcCCCEEecC
Q 012132 378 AM--AFQLPVLGTA 389 (470)
Q Consensus 378 Am--a~G~PvI~s~ 389 (470)
-+ -+|+|+|++.
T Consensus 214 ~l~~~y~~P~VVaG 227 (372)
T 2z1d_A 214 YLTEKYGIPQVVAG 227 (372)
T ss_dssp HHHHHHCCCEEEEC
T ss_pred HHHHHcCCCEEEcC
Confidence 55 5789999884
No 497
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=33.26 E-value=2.8e+02 Score=25.24 Aligned_cols=101 Identities=13% Similarity=0.044 Sum_probs=59.9
Q ss_pred EeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCc---------ChHHHHHHHHHHHhcCCCCcEEEecc
Q 012132 276 INSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA---------QTKFESELRNYVMQKKIQDRVHFVNK 346 (470)
Q Consensus 276 vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~---------~~~~~~~l~~~~~~~~l~~~V~~~g~ 346 (470)
+...+.....+.+++.+..+.+ -...++-.+.-.++ ..+....+++.++++|++ +.-..+
T Consensus 110 IAgpcs~es~e~a~~~a~~~k~---------aGa~~vr~q~fKprTs~~~f~glg~egl~~l~~~~~e~Gl~--~~te~~ 178 (350)
T 1vr6_A 110 IAGPCSVEGREMLMETAHFLSE---------LGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMY--VVTEAL 178 (350)
T ss_dssp EEECSBCCCHHHHHHHHHHHHH---------TTCCEEECBSCCCCCSTTSCCCCTHHHHHHHHHHHHHHTCE--EEEECS
T ss_pred EEeCCCcCCHHHHHHHHHHHHH---------cCCCeeeeeEEeCCCChHhhcCCCHHHHHHHHHHHHHcCCc--EEEEeC
Confidence 3334446778888888877754 22333333321111 124677888889999875 222222
Q ss_pred -cCCHHHHHHhcCEEEEccCCcccccchHHHHHH-hcCCCEEecCC
Q 012132 347 -TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM-AFQLPVLGTAA 390 (470)
Q Consensus 347 -~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAm-a~G~PvI~s~~ 390 (470)
..++..+-..+|++=.+|+ +..-..+++++ ..|+||+.++-
T Consensus 179 d~~~~~~l~~~vd~lkIgAr---~~~n~~LL~~va~~~kPVilk~G 221 (350)
T 1vr6_A 179 GEDDLPKVAEYADIIQIGAR---NAQNFRLLSKAGSYNKPVLLKRG 221 (350)
T ss_dssp SGGGHHHHHHHCSEEEECGG---GTTCHHHHHHHHTTCSCEEEECC
T ss_pred CHHHHHHHHHhCCEEEECcc---cccCHHHHHHHHccCCcEEEcCC
Confidence 2344444445899999997 44444455444 57999998863
No 498
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=33.23 E-value=28 Score=32.07 Aligned_cols=42 Identities=14% Similarity=-0.057 Sum_probs=29.3
Q ss_pred ccccEEEEEeeccCC-Cchh-HHHHHHHHHHHhCCceEEEEecC
Q 012132 72 MKSKLVLLVSHELSL-SGGP-LLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~-~G~~-~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|++|||+++....+. -..+ .....++++|.+.||+|..+...
T Consensus 1 m~~~~v~vl~GG~S~E~evSl~S~~~v~~al~~~~~~v~~i~i~ 44 (364)
T 3i12_A 1 MAKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGID 44 (364)
T ss_dssp -CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEEC
T ss_pred CCccEEEEEeccCCCCccchHHHHHHHHHHHhhcCCeEEEEEEC
Confidence 567899999854322 1111 45667889999999999998754
No 499
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=33.18 E-value=1.9e+02 Score=23.14 Aligned_cols=108 Identities=7% Similarity=0.027 Sum_probs=65.3
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCccccc-chHHHHHHh---cC
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECF-GRITIEAMA---FQ 382 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~-g~~~lEAma---~G 382 (470)
...+++|+.+.. .....+.......|. .|.......+.. -...|++++-.. ..+. |. +.+.+. ..
T Consensus 11 ~~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al--~~~~dlvl~D~~--mp~~~g~-l~~~~~~~~~~ 79 (196)
T 1qo0_D 11 RELQVLVLNPPG----EVSDALVLQLIRIGC--SVRQCWPPPEAF--DVPVDVVFTSIF--QNRHHDE-IAALLAAGTPR 79 (196)
T ss_dssp GGCEEEEESCTT----HHHHHHHHHHHHHTC--EEEEECSCCSSC--SSCCSEEEEECC--SSTHHHH-HHHHHHHSCTT
T ss_pred cCCeEEEEcCCh----hHHHHHHHHHHHcCC--eEEEecCchhhC--CCCCCEEEEeCC--CCccchH-HHHHHhccCCC
Confidence 456788888763 466777777776664 343332221211 124688876543 2222 44 555554 46
Q ss_pred CCEEec-CCCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhCH
Q 012132 383 LPVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 427 (470)
Q Consensus 383 ~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 427 (470)
+|+|.. ..+. ..+.+..|..|++..|-+ .++|..+|..++...
T Consensus 80 ~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~--~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 80 TTLVALVEYESPAVLSQIIELECHGVITQPLD--AHRVLPVLVSARRIS 126 (196)
T ss_dssp CEEEEEECCCSHHHHHHHHHHTCSEEEESSCC--GGGHHHHHHHHHHHH
T ss_pred CCEEEEEcCCChHHHHHHHHcCCCeeEecCcC--HHHHHHHHHHHHHHH
Confidence 787754 3322 233445578899999988 999999999887643
No 500
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=33.16 E-value=2.4e+02 Score=27.28 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=42.8
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
+.++|.|+.- || .-+..+|+.|.++|++|.+.-.....+ ....+...|+.+..-.....+ ...+|
T Consensus 18 ~~~~i~~iGi----Gg--~Gms~lA~~l~~~G~~V~~sD~~~~~~-------~~~~L~~~gi~~~~G~~~~~~--~~~~d 82 (524)
T 3hn7_A 18 QGMHIHILGI----CG--TFMGSLALLARALGHTVTGSDANIYPP-------MSTQLEQAGVTIEEGYLIAHL--QPAPD 82 (524)
T ss_dssp -CCEEEEETT----TS--HHHHHHHHHHHHTTCEEEEEESCCCTT-------HHHHHHHTTCEEEESCCGGGG--CSCCS
T ss_pred cCCEEEEEEe----cH--hhHHHHHHHHHhCCCEEEEECCCCCcH-------HHHHHHHCCCEEECCCCHHHc--CCCCC
Confidence 4567777652 33 446678999999999999875432211 234455668877643322221 23589
Q ss_pred EEEEcc
Q 012132 153 LIVLNT 158 (470)
Q Consensus 153 iV~~~~ 158 (470)
+|+...
T Consensus 83 ~vV~Sp 88 (524)
T 3hn7_A 83 LVVVGN 88 (524)
T ss_dssp EEEECT
T ss_pred EEEECC
Confidence 888765
Done!