BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012133
(470 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225450401|ref|XP_002278318.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic
[Vitis vinifera]
gi|296089875|emb|CBI39694.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/473 (80%), Positives = 408/473 (86%), Gaps = 16/473 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+WVKKL+RKYLDNPL IDLVG+ DEKLAEGIKLYAI TTATSKRTILSDLIT
Sbjct: 301 MLFSATMPAWVKKLARKYLDNPLTIDLVGDHDEKLAEGIKLYAIPTTATSKRTILSDLIT 360
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFTQTKRDADEVS+ALT+ IASEALHGDISQHQRERTLNGFRQGKFTVLVA
Sbjct: 361 VYAKGGKTIVFTQTKRDADEVSMALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVA 420
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV+SLE
Sbjct: 421 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVKSLE 480
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGCKFEF+SPP +E+VLESSAEQVVATLNGVHPESVEFFTPTAQ+LIEEKGT ALAAA
Sbjct: 481 RDVGCKFEFISPPAIEEVLESSAEQVVATLNGVHPESVEFFTPTAQKLIEEKGTGALAAA 540
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LA LSGFS+PPS RSLI+HEQGWVTLQLTRDS +SRGF+SARSV GFLSDVYPTAADE+G
Sbjct: 541 LAHLSGFSQPPSFRSLISHEQGWVTLQLTRDSGYSRGFLSARSVTGFLSDVYPTAADELG 600
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KI+++AD+RVQGAVFDLPEEIAKELLNKQ+PPGNTISKITKLPALQDDGP+ D YGRFS+
Sbjct: 601 KIYLVADERVQGAVFDLPEEIAKELLNKQMPPGNTISKITKLPALQDDGPAGDYYGRFSN 660
Query: 361 RDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNN 420
RDR S RGG+R R S DD + RGGRSFRS NN
Sbjct: 661 RDRSS------------RGGSRERRGSRISRGRGSSWGSDDDGGDDLNRRGGRSFRSNNN 708
Query: 421 RGSRFSTSSDDDWLI---GGSRSSRSSSRDSRSFGGACFNCGKSGHRASECPN 470
SR +S+DDWLI +RSS S RSFGG+CF CG+SGHRASECPN
Sbjct: 709 -WSRNLRTSEDDWLIGGRRSNRSSSSFGSRERSFGGSCFTCGRSGHRASECPN 760
>gi|224124522|ref|XP_002330044.1| predicted protein [Populus trichocarpa]
gi|222871469|gb|EEF08600.1| predicted protein [Populus trichocarpa]
Length = 775
Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/470 (79%), Positives = 402/470 (85%), Gaps = 16/470 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+WVKKL+RKYLDNPL IDLVG+Q+EKLAEGIKLYA+S TA SKRTILSDL+T
Sbjct: 318 MLFSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAEGIKLYALSATAASKRTILSDLVT 377
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTI+FTQTKRDADEVS+ALT+ IASEALHGDISQHQRERTLNGFRQGKFTVLVA
Sbjct: 378 VYAKGGKTIIFTQTKRDADEVSMALTNTIASEALHGDISQHQRERTLNGFRQGKFTVLVA 437
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDLIIHYELPND ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE
Sbjct: 438 TDVASRGLDIPNVDLIIHYELPNDAETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 497
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RD GCKFEFVSPP +E+VLESSAEQVVATL+GVHPESVEFFTPTAQ+LIEE+GT+ALAAA
Sbjct: 498 RDAGCKFEFVSPPAIEEVLESSAEQVVATLSGVHPESVEFFTPTAQKLIEEQGTNALAAA 557
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LA LSGFS+PPSSRSLI+H QGW TLQLTRD +SRGF+SARSV GFLSDVYP AADE+G
Sbjct: 558 LAHLSGFSQPPSSRSLISHAQGWATLQLTRDPTYSRGFLSARSVTGFLSDVYPAAADEVG 617
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KIH+IAD+RVQGAVFDLPEEIAKELLNKQIPPGNTI+KITKLPALQDDGP D YGRFSS
Sbjct: 618 KIHVIADERVQGAVFDLPEEIAKELLNKQIPPGNTIAKITKLPALQDDGPPGDFYGRFSS 677
Query: 361 RDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNN 420
RDR G R G D +DG + RGGRS S N
Sbjct: 678 RDR--------------PARGGPRGQRGGFRSSRGRGSGRDSDDGGTYRRGGRS-NSNEN 722
Query: 421 RGSRFSTSSDDDWLIGGSRSSRSSSRDSRSFGGACFNCGKSGHRASECPN 470
S+ S SS DDWLIGG RSSR SRD RSFGG+CFNCG+SGHRASECPN
Sbjct: 723 SWSQMSRSSGDDWLIGGRRSSRPPSRD-RSFGGSCFNCGRSGHRASECPN 771
>gi|118489724|gb|ABK96663.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 481
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/470 (79%), Positives = 403/470 (85%), Gaps = 16/470 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+WVKKL+RKYLDNPL IDLVG+Q+EKLAEGIKLYA+S TA SKRTILSDL+T
Sbjct: 24 MLFSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAEGIKLYALSATAASKRTILSDLVT 83
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTI+FTQTKRDADEVS+ALT+ IASEALHGDISQHQRERTLNGFRQGKFTVLVA
Sbjct: 84 VYAKGGKTIIFTQTKRDADEVSMALTNTIASEALHGDISQHQRERTLNGFRQGKFTVLVA 143
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDLIIHYELPND ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE
Sbjct: 144 TDVASRGLDIPNVDLIIHYELPNDAETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RD GCKFEFVSPP +E+VLESSAEQVVATL+GVHPESVEFFTPTAQ+LIEE+GT+ALAAA
Sbjct: 204 RDAGCKFEFVSPPAIEEVLESSAEQVVATLSGVHPESVEFFTPTAQKLIEEQGTNALAAA 263
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LA LSGFS+PPSSRSLI+HEQGW TLQLTRD +SRGF+SARSV GFLSDVYP AADE+G
Sbjct: 264 LAHLSGFSQPPSSRSLISHEQGWATLQLTRDPTYSRGFLSARSVTGFLSDVYPAAADEVG 323
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KIH+IAD+RVQGAVFDLPEEIAKELLNKQIPPGNTI+KITKLPALQDDGP D YGRFSS
Sbjct: 324 KIHVIADERVQGAVFDLPEEIAKELLNKQIPPGNTIAKITKLPALQDDGPPGDFYGRFSS 383
Query: 361 RDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNN 420
RDR G R G D +DG + RGGRS S N
Sbjct: 384 RDR--------------PARGGPRGQRGGFRSSRGRGSGRDSDDGGTYRRGGRS-NSNEN 428
Query: 421 RGSRFSTSSDDDWLIGGSRSSRSSSRDSRSFGGACFNCGKSGHRASECPN 470
S+ S SS DDWLIGG RSSR SRD RSFGG+CFNCG+SGHRASECPN
Sbjct: 429 SWSQMSRSSGDDWLIGGRRSSRPPSRD-RSFGGSCFNCGRSGHRASECPN 477
>gi|224124506|ref|XP_002330040.1| predicted protein [Populus trichocarpa]
gi|222871465|gb|EEF08596.1| predicted protein [Populus trichocarpa]
Length = 735
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/470 (80%), Positives = 410/470 (87%), Gaps = 15/470 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+WVKKL+RKYLDNPL IDLVG+++EKLAEGIKLYAISTTATSKRTILSDL+T
Sbjct: 281 MLFSATMPTWVKKLARKYLDNPLQIDLVGDREEKLAEGIKLYAISTTATSKRTILSDLVT 340
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKG KTI+FT+TKRDADEVS+ALT IASEALHGDISQHQRERTLNGFRQGKFTVLVA
Sbjct: 341 VYAKGEKTIIFTRTKRDADEVSMALTQSIASEALHGDISQHQRERTLNGFRQGKFTVLVA 400
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT+SQRRTVRSLE
Sbjct: 401 TDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLE 460
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RD GCKFEFVSPP +E++LESS EQVVATLNGVHPESVEFFTPTAQ+LIEE+GT ALAAA
Sbjct: 461 RDAGCKFEFVSPPAIEELLESSTEQVVATLNGVHPESVEFFTPTAQKLIEEQGTSALAAA 520
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LA LSGFSRPPSSRSLI+HEQGW TLQLTRD +SRGF+SARSV GFLSDVYP AADEIG
Sbjct: 521 LAHLSGFSRPPSSRSLISHEQGWTTLQLTRDPTYSRGFLSARSVTGFLSDVYPAAADEIG 580
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KIH+IAD+RVQGAVFDLPEEIAKELLNKQ+PPGNTI KITKLPALQDDGP SD YGRFSS
Sbjct: 581 KIHLIADERVQGAVFDLPEEIAKELLNKQLPPGNTIEKITKLPALQDDGPPSDFYGRFSS 640
Query: 361 RDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNN 420
RDR +RGG G +G G SDDE ++ RGGRS + N
Sbjct: 641 RDRPARGGPRGQRGGFRSSRGQGSGRY------------SDDEG--TNRRGGRSNSNENT 686
Query: 421 RGSRFSTSSDDDWLIGGSRSSRSSSRDSRSFGGACFNCGKSGHRASECPN 470
R S S SS DDWL+GG RSSR SSRDSRSFGG+CFNCG+SGHRASECPN
Sbjct: 687 R-SWMSRSSGDDWLVGGRRSSRPSSRDSRSFGGSCFNCGRSGHRASECPN 735
>gi|356505715|ref|XP_003521635.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 771
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/474 (79%), Positives = 412/474 (86%), Gaps = 9/474 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMPSWVKKL+RKYL+NPL IDLVG+++EKLAEGIKLYAI+ TATSKRTILSDL+T
Sbjct: 295 MLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAIAATATSKRTILSDLVT 354
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFTQTKRDADEVSL+LT+ I SEALHGDISQHQRERTLNGFRQGKFTVLVA
Sbjct: 355 VYAKGGKTIVFTQTKRDADEVSLSLTNSIMSEALHGDISQHQRERTLNGFRQGKFTVLVA 414
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK+G AIL++TSSQRRTVRSLE
Sbjct: 415 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGNAILLYTSSQRRTVRSLE 474
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGCKFEFVS P +E+VLESSAEQVVATL GVHPESV+FFTPTAQRLIEE+GT ALAAA
Sbjct: 475 RDVGCKFEFVSAPAMEEVLESSAEQVVATLGGVHPESVQFFTPTAQRLIEEQGTSALAAA 534
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LAQLSGFSRPPSSRSLI HEQGW+TLQLTRDS SR + SARS+ GFLSDVYP AADE+G
Sbjct: 535 LAQLSGFSRPPSSRSLITHEQGWITLQLTRDSD-SRRYFSARSITGFLSDVYPAAADEVG 593
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KIH+IAD++VQGAVFDLPEEIAKELLN+ IPPGNT+SKITKLP+LQDDGP SD YGRFS
Sbjct: 594 KIHLIADEKVQGAVFDLPEEIAKELLNRDIPPGNTVSKITKLPSLQDDGPPSDFYGRFSD 653
Query: 361 RDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDE-DGF---SSSRGGRSFR 416
RDR SR G + +RGG+ S DRRGF+SSR W +D D F SS RGGR+F+
Sbjct: 654 RDRSSRRGSTSRGGFSSRGGS---ASRDRRGFKSSRGWDVEDSGDDFGDQSSRRGGRNFK 710
Query: 417 SGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSRSFGGACFNCGKSGHRASECPN 470
+GN+ SS DDWLIGG R S S R FGG CFNCG+SGHRAS+CPN
Sbjct: 711 TGNSWSRAAGKSSGDDWLIGGGRRSSRPSSSDR-FGGTCFNCGESGHRASDCPN 763
>gi|356534927|ref|XP_003536002.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 736
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/472 (77%), Positives = 392/472 (83%), Gaps = 23/472 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP WVKKLSRKYL+NPL IDLVG Q+EKLAEGIKLYA+ TATSKRT+LSDLIT
Sbjct: 276 MLFSATMPGWVKKLSRKYLNNPLTIDLVGEQEEKLAEGIKLYALLATATSKRTVLSDLIT 335
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFTQTK+DADEVS+ALTS IASEALHGDISQHQRERTLNGFRQGKFTVLVA
Sbjct: 336 VYAKGGKTIVFTQTKKDADEVSMALTSSIASEALHGDISQHQRERTLNGFRQGKFTVLVA 395
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDL+IHYELPND ETFVHRSGRTGRAGKEGTAILM+TSSQRRTVRSLE
Sbjct: 396 TDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGRAGKEGTAILMYTSSQRRTVRSLE 455
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVG KFEFVSPP VE++LESSAEQVVATLN VHPESVEFFT TAQ+L+EE+G ALAAA
Sbjct: 456 RDVGSKFEFVSPPAVEEILESSAEQVVATLNRVHPESVEFFTATAQKLVEEQGARALAAA 515
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LAQ+SGFS+PPS RSLINHEQGW TLQLTRDS S + SARSV GFLSDVY AADE+G
Sbjct: 516 LAQMSGFSQPPSCRSLINHEQGWTTLQLTRDSDTSGRYFSARSVTGFLSDVYSQAADEVG 575
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KIH+IAD+RVQGAVFDLPEEIAKELLNK +P GNTISKITKLP LQD+ P+SD YG+FS
Sbjct: 576 KIHLIADERVQGAVFDLPEEIAKELLNKDMPSGNTISKITKLPPLQDNEPASDFYGKFSD 635
Query: 361 RDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSS--RSWGSDDEDGFSSSRGGRSFRSG 418
RDR + GS D+RGFRSS R G D D F RGGRSFRSG
Sbjct: 636 RDR-----------------SNPRGSRDQRGFRSSRGREGGQDSNDEF--GRGGRSFRSG 676
Query: 419 NNRGSRFSTSSDDDWLIGGSRSSRSSSRDSRS--FGGACFNCGKSGHRASEC 468
NNR SS +DWLIGGS S S +R GGACFNCGK GHRAS+C
Sbjct: 677 NNRSRTTGKSSGNDWLIGGSSRSSRFSSSNRDGGHGGACFNCGKPGHRASDC 728
>gi|357511641|ref|XP_003626109.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|87240993|gb|ABD32851.1| Helicase, C-terminal; Zinc finger, CCHC-type; GUCT [Medicago
truncatula]
gi|355501124|gb|AES82327.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 753
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/474 (78%), Positives = 407/474 (85%), Gaps = 21/474 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMPSWVKKL+RKYL+NPL IDLVG+++EKLAEGIKLYAIS T+TSKRTILSDLIT
Sbjct: 291 MLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAISATSTSKRTILSDLIT 350
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFTQTKRDADEVSLALT+ I SEALHGDISQHQRERTLNGFRQGKFTVLVA
Sbjct: 351 VYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVA 410
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK GTAILMFT SQRRTVRSLE
Sbjct: 411 TDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKLGTAILMFTGSQRRTVRSLE 470
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGCKFEFV+ P VEDVLESSAEQVV TLNGVHPES+ FFTPTAQ+LIEEKGT ALAAA
Sbjct: 471 RDVGCKFEFVNAPSVEDVLESSAEQVVVTLNGVHPESIAFFTPTAQKLIEEKGTTALAAA 530
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LAQ+SGFS+PPSSRSLI HEQGWVTLQLTRDS S+ + SARSV GFLSDVY AADE+G
Sbjct: 531 LAQMSGFSQPPSSRSLITHEQGWVTLQLTRDSENSQRYFSARSVTGFLSDVYSKAADEVG 590
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
K+H+IAD+RVQGAVFDLPE+IAKELL+K IP GNTISK+TKLP LQDDGP SD YG+FS
Sbjct: 591 KVHLIADERVQGAVFDLPEDIAKELLDKDIPAGNTISKVTKLPPLQDDGPPSDFYGKFSD 650
Query: 361 RDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSW----GSDDEDGFSSSRGGRSFR 416
R+R +R GGSR RG SSR W GSDD+ G SS RGGRS++
Sbjct: 651 RERNNRRGGSRDGRGFR----------------SSRGWDGGRGSDDDFGDSSRRGGRSYK 694
Query: 417 SGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSRSFGGACFNCGKSGHRASECPN 470
SGN+ S+ SS DDWLIGG +SSRSSS +RSF G CF CG+SGHRAS+CPN
Sbjct: 695 SGNS-WSKPERSSRDDWLIGGRQSSRSSSSPNRSFAGTCFTCGESGHRASDCPN 747
>gi|255543078|ref|XP_002512602.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223548563|gb|EEF50054.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 772
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/487 (75%), Positives = 402/487 (82%), Gaps = 38/487 (7%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+WVKKL+RKYLDNPL IDLVG+Q+EKLAEGIKLYAIST ATSKR+ILSDL+T
Sbjct: 303 MLFSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAEGIKLYAISTNATSKRSILSDLVT 362
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTI+FTQTKRDADEVS+ LT+ IASEALHGDISQHQRERTLNGFRQGKFTVLVA
Sbjct: 363 VYAKGGKTIIFTQTKRDADEVSMVLTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVA 422
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGRAGKEGTA+LMFTSSQRRTV+SLE
Sbjct: 423 TDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAVLMFTSSQRRTVKSLE 482
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGC+FEFVSPP E+VLESSAEQV+ATL+GVHPESV FFTPTAQRLIEE+GT ALAAA
Sbjct: 483 RDVGCRFEFVSPPGTEEVLESSAEQVIATLSGVHPESVGFFTPTAQRLIEEQGTSALAAA 542
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LAQLSGFS+PPSSRSLI+HEQGW TLQLTRD ++SRGF+SARSV GFLSDVY AADE+G
Sbjct: 543 LAQLSGFSQPPSSRSLISHEQGWTTLQLTRDPSYSRGFLSARSVTGFLSDVYTAAADEVG 602
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KIHIIAD++VQGAVFDLPEEIAKELLNKQ+PPGNTISKITKLP+LQDDGP SD YGRFSS
Sbjct: 603 KIHIIADEKVQGAVFDLPEEIAKELLNKQLPPGNTISKITKLPSLQDDGPPSDFYGRFSS 662
Query: 361 RDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNN 420
RDR RGGG + G SDD+D +
Sbjct: 663 RDRPPRGGGRGQRGSRSSQGWG----------GGRGGRNSDDDDD-----------TFRR 701
Query: 421 RGSRFSTSSDDDWLIGGSRSS------RSSSRD-----------SRSFGGACFNCGKSGH 463
G FS SS DDWLIGG RSS RSS RD RSFGG+CFNCG+SGH
Sbjct: 702 GGRSFSRSSSDDWLIGGGRSSRPSPRGRSSPRDWSSPRDRSSPRDRSFGGSCFNCGRSGH 761
Query: 464 RASECPN 470
RAS+CPN
Sbjct: 762 RASDCPN 768
>gi|356574052|ref|XP_003555166.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 736
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/472 (76%), Positives = 394/472 (83%), Gaps = 25/472 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP WVKKLSRKYL+NPL IDLVG Q+EKLAEGIKLYA+S TA+SKRT+LSDLIT
Sbjct: 278 MLFSATMPGWVKKLSRKYLNNPLTIDLVGEQEEKLAEGIKLYALSATASSKRTVLSDLIT 337
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFTQTK+DADEVS+ALTS IASEALHGDISQHQRERTLNGFRQGKFTVLVA
Sbjct: 338 VYAKGGKTIVFTQTKKDADEVSMALTSSIASEALHGDISQHQRERTLNGFRQGKFTVLVA 397
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDL+IHYELPND ETFVHRSGRTGRAGKEGTAILM+TSSQRRTVRSLE
Sbjct: 398 TDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGRAGKEGTAILMYTSSQRRTVRSLE 457
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGCKFEFVSPP +E++LESSAEQVVATLN VHPESV+FF TAQ+L+EE+G ALAAA
Sbjct: 458 RDVGCKFEFVSPPAMEEILESSAEQVVATLNRVHPESVDFFIATAQKLVEEQGARALAAA 517
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LAQ+SGFS+PPS RSLINHEQGW TLQLTRD S + SARSV GFLSDVY AADE+G
Sbjct: 518 LAQMSGFSQPPSCRSLINHEQGWTTLQLTRDPDTSARYFSARSVTGFLSDVYSPAADEVG 577
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KIH+IAD+RVQGAVFDLPEEIAKELL K +P GNTISKITKLP LQDD P+SD YG+FS
Sbjct: 578 KIHLIADERVQGAVFDLPEEIAKELLTKDLPSGNTISKITKLPPLQDDEPASDFYGKFSD 637
Query: 361 RDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSW--GSDDEDGFSSSRGGRSFRSG 418
RDR +R GS D+RGFRSSR W G D +D F +GGRSFRSG
Sbjct: 638 RDRSNR-----------------RGSRDQRGFRSSRGWEGGQDSDDEF--GQGGRSFRSG 678
Query: 419 NNRGSRFSTSSDDDWLIGGSRSSRSSSRDSRS--FGGACFNCGKSGHRASEC 468
N R SS DDWLIGGS S S +RS GGACFNCGK GHRAS+C
Sbjct: 679 NK--FRMGKSSGDDWLIGGSSRSSRFSSSNRSGGHGGACFNCGKPGHRASDC 728
>gi|343172316|gb|AEL98862.1| DEAD-box ATP-dependent RNA helicase, partial [Silene latifolia]
Length = 782
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/487 (73%), Positives = 401/487 (82%), Gaps = 35/487 (7%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+W+KKLSRKYLDNPL IDLVG+++EKLAEGIKLYAIS+TA SKRT+LSD+IT
Sbjct: 310 MLFSATMPTWIKKLSRKYLDNPLTIDLVGDREEKLAEGIKLYAISSTAASKRTMLSDVIT 369
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFTQTKRDADEVSLAL++ I SEALHGDISQHQRERTLNGFRQGKF+VLVA
Sbjct: 370 VYAKGGKTIVFTQTKRDADEVSLALSNSIPSEALHGDISQHQRERTLNGFRQGKFSVLVA 429
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDL++HYE+PNDPETFVHRSGRTGRAGKEGTA+LM+TS+QRRTVRSLE
Sbjct: 430 TDVASRGLDIPNVDLVVHYEMPNDPETFVHRSGRTGRAGKEGTALLMYTSNQRRTVRSLE 489
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGC F +V P VE+VL SSA+QVVATL GVHPES++FFTPTAQ+L+EE+GT ALAAA
Sbjct: 490 RDVGCHFGYVGAPSVEEVLVSSADQVVATLRGVHPESIKFFTPTAQKLLEEQGTGALAAA 549
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
+A LSGFS+PPS++SL++HEQGWVTLQL+RDS FSRG+MSARSVMGFLSDVYPTAADE+G
Sbjct: 550 IAHLSGFSQPPSAKSLLSHEQGWVTLQLSRDSVFSRGYMSARSVMGFLSDVYPTAADEVG 609
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KI +IAD+RVQGAVFDLPEEIAKELL K++PPGNT+SKI+KLPALQDD P SDNYGRFS
Sbjct: 610 KIQLIADERVQGAVFDLPEEIAKELLKKELPPGNTLSKISKLPALQDDAPPSDNYGRFSG 669
Query: 361 R---------DRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDEDGFSSS-- 409
R DR GGGSR SRG RS SD EDG S S
Sbjct: 670 RGRGSRGGMSDRRGSGGGSRTSRGWG------------------RSQDSDFEDGGSDSFR 711
Query: 410 RGGRSFRSGNNR--GSRFSTSSDDDWLI----GGSRSSRSSSRDSRSFGGACFNCGKSGH 463
RGGRS R NR S+SS DDWLI SRSS R F GACFNCGKSGH
Sbjct: 712 RGGRSPRPSTNRWSSGSSSSSSGDDWLIGGGRSSSRSSPMGGRRDGQFSGACFNCGKSGH 771
Query: 464 RASECPN 470
RA+ECP
Sbjct: 772 RATECPT 778
>gi|449435589|ref|XP_004135577.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Cucumis sativus]
Length = 748
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/473 (77%), Positives = 405/473 (85%), Gaps = 24/473 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+WVKKL+RKYLDNPL IDLVG+QDEKLAEGIKL+AI TTATSK+TIL DL+T
Sbjct: 296 MLFSATMPTWVKKLARKYLDNPLTIDLVGDQDEKLAEGIKLHAILTTATSKQTILRDLVT 355
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFTQTKRDADEVSLAL + I SEALHGDISQHQRERTLNGFRQGKFTVLVA
Sbjct: 356 VYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFRQGKFTVLVA 415
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGRAGKEGTAILMFT+SQRRTVRSLE
Sbjct: 416 TDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLE 475
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGCKFEF +PP +E+VL+SSAEQVV TL GVHPES+E+FTPTAQ+LI+E+G ALAAA
Sbjct: 476 RDVGCKFEFANPPGMEEVLKSSAEQVVVTLRGVHPESIEYFTPTAQKLIDEQGLGALAAA 535
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LAQLSGF+ PPSSRSLINHEQGWVTLQLTRD ++SRGF+SARSV GFLSDVY AADEIG
Sbjct: 536 LAQLSGFTHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSDVYSPAADEIG 595
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KIH+IAD+R+ GAVFDLPEEIAKELLNK++P GNTI KITKLP LQDDGP SDNYGRFS
Sbjct: 596 KIHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKITKLPPLQDDGPPSDNYGRFSG 655
Query: 361 RDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGS---DDEDGFSSSRGGRSFRS 417
R+R + S DRRG ++SR WGS D++G SR RSFR+
Sbjct: 656 RER-----------------SSRNSSRDRRGLKTSRGWGSSRDSDDNGDIFSR-NRSFRT 697
Query: 418 GNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSRSFGGACFNCGKSGHRASECPN 470
N++G F SS DDWLIGG RSSRSSS D FGG+CFNCG+ GHRASECP+
Sbjct: 698 NNSKGRNFR-SSGDDWLIGGRRSSRSSSVD--RFGGSCFNCGRMGHRASECPD 747
>gi|343172314|gb|AEL98861.1| DEAD-box ATP-dependent RNA helicase, partial [Silene latifolia]
Length = 782
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/487 (73%), Positives = 401/487 (82%), Gaps = 35/487 (7%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+W+KKLSRKYLDNPL IDLVG+++EKLAEGIKLYAIS+TA SKRT+LSD+IT
Sbjct: 310 MLFSATMPTWIKKLSRKYLDNPLTIDLVGDREEKLAEGIKLYAISSTAASKRTMLSDVIT 369
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFTQTKRDADEVSLAL++ I SEALHGDISQHQRERTLNGFRQGKF+VLVA
Sbjct: 370 VYAKGGKTIVFTQTKRDADEVSLALSNSIPSEALHGDISQHQRERTLNGFRQGKFSVLVA 429
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDL++HYE+PNDPETFVHRSGRTGRAGKEGTA+LM+TS+QRRTVRSLE
Sbjct: 430 TDVASRGLDIPNVDLVVHYEMPNDPETFVHRSGRTGRAGKEGTALLMYTSNQRRTVRSLE 489
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGC FE+V P VE+VLESSA+QVVATL GVHP+S++FFTPTAQ+L+EE+GT ALAAA
Sbjct: 490 RDVGCHFEYVGAPSVEEVLESSADQVVATLRGVHPDSIKFFTPTAQKLLEEQGTGALAAA 549
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
+A LSGFS+PPS++SL++HEQGWVTLQL+RDS FSRG+MSARSVMGFLSDVYPTAADE+G
Sbjct: 550 IAHLSGFSQPPSAKSLLSHEQGWVTLQLSRDSVFSRGYMSARSVMGFLSDVYPTAADEVG 609
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KI +IAD+RVQGAVFDLPEEIAKELL K++PPGNT+SKI+KLPALQDD P SDNYGRFS
Sbjct: 610 KIQLIADERVQGAVFDLPEEIAKELLKKELPPGNTLSKISKLPALQDDAPPSDNYGRFSG 669
Query: 361 R---------DRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDEDGFSSS-- 409
R DR GGGSR SRG RS SD EDG S S
Sbjct: 670 RGRGSRGGMSDRRGSGGGSRTSRGWG------------------RSQDSDFEDGGSDSFR 711
Query: 410 RGGRSFRSGNN--RGSRFSTSSDDDWLI----GGSRSSRSSSRDSRSFGGACFNCGKSGH 463
RGGRS R N S SS DDWLI SRSS R F GACFNCGKSGH
Sbjct: 712 RGGRSPRPSTNRWSSGSSSRSSGDDWLIGGGRSSSRSSPMGGRRDGQFSGACFNCGKSGH 771
Query: 464 RASECPN 470
RA+ECP
Sbjct: 772 RATECPT 778
>gi|356572874|ref|XP_003554590.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 771
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/475 (77%), Positives = 399/475 (84%), Gaps = 9/475 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMPSWVKKL+RKYL+NPL IDLVG+++EKLAEGIKLYAI+ TATSKRTILSDL+T
Sbjct: 294 MLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAIAATATSKRTILSDLVT 353
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFTQTKRDADEVSL+LT+ I SEALHGDISQHQRERTLNGFRQGKFTVLVA
Sbjct: 354 VYAKGGKTIVFTQTKRDADEVSLSLTNSIMSEALHGDISQHQRERTLNGFRQGKFTVLVA 413
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK+G AIL++TSSQRRTVRSLE
Sbjct: 414 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGNAILLYTSSQRRTVRSLE 473
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGCKFEFVS P +E+VLE+SAEQVVATL GVHPESV+FFTPTAQ+LIEE+GT ALAAA
Sbjct: 474 RDVGCKFEFVSSPAMEEVLEASAEQVVATLCGVHPESVQFFTPTAQKLIEEQGTSALAAA 533
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LAQLSGFSRPPSSRSLI HEQGW+TLQLTRDS SR + SARSV GFLSDVY AADE+G
Sbjct: 534 LAQLSGFSRPPSSRSLITHEQGWITLQLTRDSD-SRRYFSARSVTGFLSDVYSAAADEVG 592
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KIH+IAD+RVQGAVFDLPEEIAKELLN+ IPPGNTISKITKLP LQDDGP SD YG
Sbjct: 593 KIHLIADERVQGAVFDLPEEIAKELLNRDIPPGNTISKITKLPPLQDDGPPSDFYG--RF 650
Query: 361 RDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDEDGFSSS-----RGGRSF 415
DR + G G S DRRGF+SSR W +D D RGGR+F
Sbjct: 651 SDRDRSSRRGSSTSRGGFSSRGGSSSRDRRGFKSSRGWDGEDSDDDDFGDRSSWRGGRNF 710
Query: 416 RSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSRSFGGACFNCGKSGHRASECPN 470
++GN+ SS DDWLIGGSR S S S FGGACFNCG+SGHRAS+CPN
Sbjct: 711 KTGNSWSRAAGRSSGDDWLIGGSRRSSRPSS-SDRFGGACFNCGESGHRASDCPN 764
>gi|3775987|emb|CAA09196.1| RNA helicase [Arabidopsis thaliana]
Length = 748
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/471 (76%), Positives = 399/471 (84%), Gaps = 14/471 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+WVKKL+RKYLDNPLNIDLVG+QDEKLAEGIKLYAI+TT+TSKRTILSDLIT
Sbjct: 287 MLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLIT 346
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFTQTKRDADEVSLAL++ IA+EALHGDISQHQRERTLN FRQGKFTVLVA
Sbjct: 347 VYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVA 406
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGRAGKEG+AILM TSSQ+RTVRSLE
Sbjct: 407 TDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLE 466
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGC FEF+SPP V D+LESSA+QVVATLNGVHP+S++FF+ TAQ+L EEKGTDALAAA
Sbjct: 467 RDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFFSATAQKLYEEKGTDALAAA 526
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LA LSGFS+PPSSRSL++HE+GWVTLQL RD +RGF+SARSV GFLSD+Y TAADE+G
Sbjct: 527 LAHLSGFSQPPSSRSLLSHEKGWVTLQLIRDPTNARGFLSARSVTGFLSDLYRTAADEVG 586
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KI +IADDR+QGAVFDLPEEIAKELL K +P GN++S ITKLP LQDDGPSSDNYGRFSS
Sbjct: 587 KIFLIADDRIQGAVFDLPEEIAKELLEKDVPEGNSLSMITKLPPLQDDGPSSDNYGRFSS 646
Query: 361 RDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNN 420
RDR RGGG G RGG+ R SWG DD+ G SR S +
Sbjct: 647 RDRMPRGGGGSRGSRGGRGGSS----------RGRDSWGGDDDRG---SRRSIGGGSSWS 693
Query: 421 RGSRFSTSSDDDWLIGG-SRSSRSSSRDSRSFGGACFNCGKSGHRASECPN 470
RG S S DDWLIGG S SS + RSFGG+CF CGKSGHRA++CP+
Sbjct: 694 RGGSSSRGSSDDWLIGGRSSSSSRAPSRERSFGGSCFICGKSGHRATDCPD 744
>gi|147828502|emb|CAN77581.1| hypothetical protein VITISV_015347 [Vitis vinifera]
Length = 786
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/482 (73%), Positives = 382/482 (79%), Gaps = 60/482 (12%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDL-----------------------VGNQDEKLAE 37
MLFSATMP+WVKKL+RKYLDNPL IDL VG+ DEKLAE
Sbjct: 301 MLFSATMPAWVKKLARKYLDNPLTIDLGNFCPHWGLNLEPPKNPPQTLDHVGDHDEKLAE 360
Query: 38 GIKLYAISTTATSKRTILSDLIT---------------VYAKGGKTIVFTQTKRDADEVS 82
GIKLYAI TTATSKRTILSDLIT VYAKGGKTIVFTQTKRDADEVS
Sbjct: 361 GIKLYAIPTTATSKRTILSDLITKNIVKDRGGFQYGHKVYAKGGKTIVFTQTKRDADEVS 420
Query: 83 LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL------- 135
+ALT+ IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL
Sbjct: 421 MALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLKYVDLLF 480
Query: 136 --IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 193
IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV+SLERDVGCKFEF+SPP
Sbjct: 481 LQIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVKSLERDVGCKFEFISPP 540
Query: 194 VVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 253
+E+VLESSAEQVVATLNGVHPESVEFFTPTAQ+LIEEKGT ALAAALA LSGFS+PPS
Sbjct: 541 AIEEVLESSAEQVVATLNGVHPESVEFFTPTAQKLIEEKGTGALAAALAHLSGFSQPPSF 600
Query: 254 RSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGA 313
RSLI+HEQGWVTLQLTRDS +SRGF+SARSV GFLSDVYPTAADE+GKI+++AD+RVQGA
Sbjct: 601 RSLISHEQGWVTLQLTRDSGYSRGFLSARSVTGFLSDVYPTAADELGKIYLVADERVQGA 660
Query: 314 VFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFS 373
VFDLPEEIAKELLNKQ+PPGNTISKITKLPALQDDGP+ D YGRFS+RDR SRGG
Sbjct: 661 VFDLPEEIAKELLNKQMPPGNTISKITKLPALQDDGPAGDYYGRFSNRDRSSRGG----- 715
Query: 374 RGGARGGARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDW 433
+R R S DD + RGGRSFRS NN SR +S+DDW
Sbjct: 716 -------SRERRGSRISRGRGSSWGSDDDGGDDLNRRGGRSFRSNNN-WSRNLRTSEDDW 767
Query: 434 LI 435
LI
Sbjct: 768 LI 769
>gi|449517104|ref|XP_004165586.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like, partial [Cucumis sativus]
Length = 726
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/440 (77%), Positives = 378/440 (85%), Gaps = 22/440 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+WVKKL+RKYLDNPL IDLVG+QDEKLAEGIKL+AI TTATSK+TIL DL+T
Sbjct: 296 MLFSATMPTWVKKLARKYLDNPLTIDLVGDQDEKLAEGIKLHAILTTATSKQTILRDLVT 355
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFTQTKRDADEVSLAL + I SEALHGDISQHQRERTLNGFRQGKFTVLVA
Sbjct: 356 VYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGFRQGKFTVLVA 415
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGRAGKEGTAILMFT+SQRRTVRSLE
Sbjct: 416 TDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLE 475
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGCKFEF +PP +E+VL+SSAEQVV TL GVHPES+E+FTPTAQ+LI+E+G ALAAA
Sbjct: 476 RDVGCKFEFANPPGMEEVLKSSAEQVVVTLRGVHPESIEYFTPTAQKLIDEQGLGALAAA 535
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LAQLSGF+ PPSSRSLINHEQGWVTLQLTRD ++SRGF+SARSV GFLSDVY AADEIG
Sbjct: 536 LAQLSGFTHPPSSRSLINHEQGWVTLQLTRDPSYSRGFLSARSVTGFLSDVYSPAADEIG 595
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KIH+IAD+R+ GAVFDLPEEIAKELLNK++P GNTI KITKLP LQDDGP SDNYGRFS
Sbjct: 596 KIHLIADERINGAVFDLPEEIAKELLNKELPEGNTILKITKLPPLQDDGPPSDNYGRFSG 655
Query: 361 RDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGS---DDEDGFSSSRGGRSFRS 417
R+R + S DRRG ++SR WGS D++G SR RSFR+
Sbjct: 656 RER-----------------SSRNSSRDRRGLKTSRGWGSSRDSDDNGDIFSR-NRSFRT 697
Query: 418 GNNRGSRFSTSSDDDWLIGG 437
N++G F SS DDWLIGG
Sbjct: 698 NNSKGRNFR-SSGDDWLIGG 716
>gi|195612018|gb|ACG27839.1| nucleolar RNA helicase 2 [Zea mays]
Length = 744
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/491 (68%), Positives = 375/491 (76%), Gaps = 39/491 (7%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMPSWVKKLSR+YL+NPL IDLVG+QDEKLAEGIKLYAI TATSKRT+LSDLIT
Sbjct: 271 MLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTATSKRTVLSDLIT 330
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFT+TK+DADEVSLALT+ IASEALHGDISQHQRERTLNGFRQGKFTVLVA
Sbjct: 331 VYAKGGKTIVFTRTKKDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVA 390
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK GTAILMFTSSQ+RTV+SLE
Sbjct: 391 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQKRTVKSLE 450
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGC FEF+SPP +E+VLESSAE V+ATL GVHPES ++F A++L EE G ALA+A
Sbjct: 451 RDVGCNFEFISPPSIEEVLESSAEHVIATLRGVHPESTKYFLGAAEKLTEELGPHALASA 510
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LA LSGFS+PPSSRSLI+HEQGWVTLQLTR+ F RGF S RSV GFLSDV AADE+G
Sbjct: 511 LAHLSGFSQPPSSRSLISHEQGWVTLQLTREQGFGRGFFSPRSVTGFLSDVCSAAADEVG 570
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KI++ AD+ VQGAVFDLPEEIAK+LL ++PPGNT++KI+KLPALQDDGP++D+YGRFS+
Sbjct: 571 KIYLTADENVQGAVFDLPEEIAKDLLTMELPPGNTLTKISKLPALQDDGPATDSYGRFSN 630
Query: 361 RDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSFR---- 416
SR W +D ED F RGGRS R
Sbjct: 631 DRGSRNNRRSRGGGASR----------------GRGGWDTDGEDRF--RRGGRSLRSDND 672
Query: 417 -----------------SGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSRSFGGACFNCG 459
S S S SS GG SS S +RSF GACFNCG
Sbjct: 673 SWSDDDWSGGGRKSNRSSSFGSRSSSSYSSRGSPSFGGRSSSFGSRESNRSFSGACFNCG 732
Query: 460 KSGHRASECPN 470
+SGHRA++CPN
Sbjct: 733 ESGHRATDCPN 743
>gi|212274773|ref|NP_001130659.1| uncharacterized protein LOC100191761 [Zea mays]
gi|194689766|gb|ACF78967.1| unknown [Zea mays]
Length = 598
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/490 (67%), Positives = 373/490 (76%), Gaps = 38/490 (7%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMPSWVKKLSR+YL+NPL IDLVG+QDEKLAEGIKLYAI T TSKRT+LSDLIT
Sbjct: 126 MLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTTTSKRTVLSDLIT 185
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFT+TK+DADEVSLALT+ IASEALHGDISQHQRERTLNGFRQGKFTVLVA
Sbjct: 186 VYAKGGKTIVFTRTKKDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVA 245
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK GTAILMFTSSQ+RTV+SLE
Sbjct: 246 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQKRTVKSLE 305
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGC FEF+SPP +E+VLESSAE V+ATL GVHPES ++F A++L EE G ALA+A
Sbjct: 306 RDVGCNFEFISPPSIEEVLESSAEHVIATLRGVHPESTKYFLGAAEKLTEELGPHALASA 365
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LA LSGFS+PPSSRSLI+HEQGWVTLQLTR+ F RGF S RSV GFLSDV AADE+G
Sbjct: 366 LAHLSGFSQPPSSRSLISHEQGWVTLQLTREQGFGRGFFSPRSVTGFLSDVCSAAADEVG 425
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KI++ AD+ VQGAVFDLPEEIAK+LL ++PPGNT++KI+KLPALQDDGP++D+YGRFS+
Sbjct: 426 KIYLTADENVQGAVFDLPEEIAKDLLTMELPPGNTLTKISKLPALQDDGPATDSYGRFSN 485
Query: 361 RDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSFR---- 416
SR W +D ED F RGGRS R
Sbjct: 486 DRGSRNNRRSRGGGASR----------------GRGGWDTDGEDRF--RRGGRSLRSDND 527
Query: 417 ----------------SGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSRSFGGACFNCGK 460
S + S SS GG SS +RSF GACFNCG+
Sbjct: 528 SWSDDDWSGGGRKSNRSSSFGSRSSSYSSRGSPSFGGRSSSFGGRESNRSFSGACFNCGE 587
Query: 461 SGHRASECPN 470
SGHRA++CPN
Sbjct: 588 SGHRATDCPN 597
>gi|47827092|dbj|BAD21122.1| ATP-dependent RNA helicase [Hordeum vulgare subsp. vulgare]
gi|326532610|dbj|BAK05234.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 764
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/511 (66%), Positives = 384/511 (75%), Gaps = 62/511 (12%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMPSWVKKLSR+YL+NPL IDLVG+QDEKLAEGIKL+AI T TSKRTILSDLIT
Sbjct: 274 MLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLFAIPLTTTSKRTILSDLIT 333
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFT+TKRDADEVSLALT+ IASEALHGDISQHQRERTLNGFRQGKFTVLVA
Sbjct: 334 VYAKGGKTIVFTRTKRDADEVSLALTTSIASEALHGDISQHQRERTLNGFRQGKFTVLVA 393
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK G AILMFT++QRRTV+SLE
Sbjct: 394 TDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGNAILMFTTNQRRTVKSLE 453
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGCKFEF+ PP +E+VL+SSAE V+ATL GVHPES+++F P A+RL +E G ALA+A
Sbjct: 454 RDVGCKFEFIGPPTMEEVLDSSAEHVIATLRGVHPESIQYFVPAAERLSQELGPTALASA 513
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LA LSGFS+PPSSRSLI+HEQG VTLQLTRD ++RGF S RSV GFLSDV P+AAD +G
Sbjct: 514 LAHLSGFSQPPSSRSLISHEQGSVTLQLTRDPEYARGFFSPRSVTGFLSDVSPSAADAVG 573
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KI++IAD+RVQGAVFDLPEEIAK+LL ++PPGNT+SK+TKLP LQDDGP++D+YGRFS+
Sbjct: 574 KIYLIADERVQGAVFDLPEEIAKDLLTMELPPGNTLSKVTKLPVLQDDGPATDSYGRFSN 633
Query: 361 RDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNN 420
DR G+R G R W SD +GF RGGRS +N
Sbjct: 634 SDR------------GSRNRRGSSRGGMGGGSRGRGGWDSD--EGF--RRGGRSSSRPDN 677
Query: 421 RGSRFSTSSDDDWLIGGSRSSRSSSRDS-------------------------------- 448
SDDD+ GG+R S SS S
Sbjct: 678 -----DIWSDDDFSGGGARRSNRSSSPSGGRSSYGGRGGSSSFGDRSSSFGERSSSYGGR 732
Query: 449 ---------RSFGGACFNCGKSGHRASECPN 470
RSF GACF CG+SGHRAS+CPN
Sbjct: 733 GGSSFGSRDRSFSGACFTCGQSGHRASDCPN 763
>gi|414873743|tpg|DAA52300.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 743
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/490 (67%), Positives = 373/490 (76%), Gaps = 38/490 (7%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMPSWVKKLSR+YL+NPL IDLVG+QDEKLAEGIKLYAI T TSKRT+LSDLIT
Sbjct: 271 MLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTTTSKRTVLSDLIT 330
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFT+TK+DADEVSLALT+ IASEALHGDISQHQRERTLNGFRQGKFTVLVA
Sbjct: 331 VYAKGGKTIVFTRTKKDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVA 390
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK GTAILMFTSSQ+RTV+SLE
Sbjct: 391 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQKRTVKSLE 450
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGC FEF+SPP +E+VLESSAE V+ATL GVHPES ++F A++L EE G ALA+A
Sbjct: 451 RDVGCNFEFISPPSIEEVLESSAEHVIATLRGVHPESTKYFLGAAEKLTEELGPHALASA 510
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LA LSGFS+PPSSRSLI+HEQGWVTLQLTR+ F RGF S RSV GFLSDV AADE+G
Sbjct: 511 LAHLSGFSQPPSSRSLISHEQGWVTLQLTREQGFGRGFFSPRSVTGFLSDVCSAAADEVG 570
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KI++ AD+ VQGAVFDLPEEIAK+LL ++PPGNT++KI+KLPALQDDGP++D+YGRFS+
Sbjct: 571 KIYLTADENVQGAVFDLPEEIAKDLLTMELPPGNTLTKISKLPALQDDGPATDSYGRFSN 630
Query: 361 RDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSFR---- 416
SR W +D ED F RGGRS R
Sbjct: 631 DRGSRNNRRSRGGGASR----------------GRGGWDTDGEDRF--RRGGRSLRSDND 672
Query: 417 ----------------SGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSRSFGGACFNCGK 460
S + S SS GG SS +RSF GACFNCG+
Sbjct: 673 SWSDDDWSGGGRKSNRSSSFGSRSSSYSSRGSPSFGGRSSSFGGRESNRSFSGACFNCGE 732
Query: 461 SGHRASECPN 470
SGHRA++CPN
Sbjct: 733 SGHRATDCPN 742
>gi|357122984|ref|XP_003563193.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like isoform 2 [Brachypodium distachyon]
Length = 749
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/475 (70%), Positives = 381/475 (80%), Gaps = 8/475 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMPSWVKKLSR+YL+NPL IDLVG+QDEKLAEGIKLYAI T TSKRTILSDLIT
Sbjct: 277 MLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTVTSKRTILSDLIT 336
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFT+TKRDADEVSLALT+ IASEALHGDISQHQRERTLNGFRQGKFTVLVA
Sbjct: 337 VYAKGGKTIVFTRTKRDADEVSLALTASIASEALHGDISQHQRERTLNGFRQGKFTVLVA 396
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK G AILMFT++QRRTV+SLE
Sbjct: 397 TDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGNAILMFTNNQRRTVKSLE 456
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGC+FEF+ PP +E+VL+SSAE V+ATL GVH ES+++F P A+RL EE G +ALA A
Sbjct: 457 RDVGCRFEFIGPPTMEEVLDSSAEHVIATLRGVHQESIQYFIPAAERLSEELGPNALATA 516
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LA LSGFS+PPSSRSLI+HEQG VTLQLTRD A++RGF S RSV GFLSDV P AADE+G
Sbjct: 517 LAHLSGFSQPPSSRSLISHEQGSVTLQLTRDPAYARGFFSPRSVTGFLSDVSPAAADEVG 576
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KI++IAD+RVQGAVFDLPEEIAK LL+ ++PPGNT++K+TKLPALQDDGP++D+YGRFS+
Sbjct: 577 KIYLIADERVQGAVFDLPEEIAKNLLSMELPPGNTLTKVTKLPALQDDGPATDSYGRFSN 636
Query: 361 RDRFSRGGGSRFSRGGARGGARGGGSMDRRGF-RSSRSWGSDD----EDGFSSSRGGRSF 415
DR G RG RGG D GF R RS+ D+ +D FS +
Sbjct: 637 SDR-GSRSRRGSRASGPRG--RGGWDSDGEGFGRGGRSFKPDNDIWSDDDFSGGARRSNR 693
Query: 416 RSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSRSFGGACFNCGKSGHRASECPN 470
S + S G SS SRSF GACF CG+SGHRAS+CPN
Sbjct: 694 SSSSRGRSSSYGGRGGSSSFGDRSSSFGDRSSSRSFSGACFTCGQSGHRASDCPN 748
>gi|357122982|ref|XP_003563192.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like isoform 1 [Brachypodium distachyon]
Length = 769
Score = 639 bits (1647), Expect = e-180, Method: Compositional matrix adjust.
Identities = 344/517 (66%), Positives = 387/517 (74%), Gaps = 72/517 (13%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMPSWVKKLSR+YL+NPL IDLVG+QDEKLAEGIKLYAI T TSKRTILSDLIT
Sbjct: 277 MLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTVTSKRTILSDLIT 336
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFT+TKRDADEVSLALT+ IASEALHGDISQHQRERTLNGFRQGKFTVLVA
Sbjct: 337 VYAKGGKTIVFTRTKRDADEVSLALTASIASEALHGDISQHQRERTLNGFRQGKFTVLVA 396
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK G AILMFT++QRRTV+SLE
Sbjct: 397 TDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGNAILMFTNNQRRTVKSLE 456
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGC+FEF+ PP +E+VL+SSAE V+ATL GVH ES+++F P A+RL EE G +ALA A
Sbjct: 457 RDVGCRFEFIGPPTMEEVLDSSAEHVIATLRGVHQESIQYFIPAAERLSEELGPNALATA 516
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LA LSGFS+PPSSRSLI+HEQG VTLQLTRD A++RGF S RSV GFLSDV P AADE+G
Sbjct: 517 LAHLSGFSQPPSSRSLISHEQGSVTLQLTRDPAYARGFFSPRSVTGFLSDVSPAAADEVG 576
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KI++IAD+RVQGAVFDLPEEIAK LL+ ++PPGNT++K+TKLPALQDDGP++D+YGRFS+
Sbjct: 577 KIYLIADERVQGAVFDLPEEIAKNLLSMELPPGNTLTKVTKLPALQDDGPATDSYGRFSN 636
Query: 361 RDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNN 420
DR G RG RGG W SD E GF RGGRSF+ N+
Sbjct: 637 SDR-GSRSRRGSRASGPRG--RGG-------------WDSDGE-GF--GRGGRSFKPDND 677
Query: 421 RGSRFSTSSDDDW---------------------------------------------LI 435
SDDD+
Sbjct: 678 ------IWSDDDFSGGARRSNRSSSSRGRSSSYGGRGGSSSFGDRSSSFGDRSSSYGGRG 731
Query: 436 GGSRSSRSSSRDS--RSFGGACFNCGKSGHRASECPN 470
G S RSSS S RSF GACF CG+SGHRAS+CPN
Sbjct: 732 GSSFGDRSSSFGSRDRSFSGACFTCGQSGHRASDCPN 768
>gi|413932546|gb|AFW67097.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 745
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 336/493 (68%), Positives = 377/493 (76%), Gaps = 42/493 (8%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMPSWVKKLSR+YL+NPL IDLVG+QDEKLAEGIKL+AI TATSKRTILSDLIT
Sbjct: 271 MLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLHAIPLTATSKRTILSDLIT 330
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFT+TK+DADEVSLALT+ IASEALHGDISQHQRERTLNGFRQGKFTVLVA
Sbjct: 331 VYAKGGKTIVFTRTKKDADEVSLALTTSIASEALHGDISQHQRERTLNGFRQGKFTVLVA 390
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK GTAILMFTSSQ+RTV SLE
Sbjct: 391 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQKRTVMSLE 450
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGCKFEF+SPP +E+VLESSAE V+ATL GVHPES ++F A++L EE G ALA+A
Sbjct: 451 RDVGCKFEFISPPSIEEVLESSAEHVIATLRGVHPESTQYFLGAAEKLTEELGPHALASA 510
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LA LSGFS+PPSSRSLI++EQGWVTLQLTR+ + RGF S RSV GFLSDV AADE+G
Sbjct: 511 LAHLSGFSQPPSSRSLISYEQGWVTLQLTREPGYGRGFFSPRSVTGFLSDVCSAAADEVG 570
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KI+I AD+ VQGAVFDLPEEIAK+LL ++PPGNT++KI+KLPALQDD P++D+YGRFS+
Sbjct: 571 KIYITADENVQGAVFDLPEEIAKDLLTMEVPPGNTLTKISKLPALQDDSPATDSYGRFSN 630
Query: 361 RDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSFR---- 416
R W +D ED + RGGRS R
Sbjct: 631 DRGSRNRRSRGGGAS-----------------RGRGGWDTDSEDRY--RRGGRSLRSDND 671
Query: 417 -------SGNNRGSRFSTSSDDDWLIG-----------GSRSSRSSSRD-SRSFGGACFN 457
SG R S S+SS G RSS R+ SRSF GACFN
Sbjct: 672 SWSDDDWSGGGRKSNRSSSSFGGRSSSYGSRGSPSPSFGVRSSSLGGRESSRSFSGACFN 731
Query: 458 CGKSGHRASECPN 470
CG+SGHRAS+CPN
Sbjct: 732 CGESGHRASDCPN 744
>gi|297812857|ref|XP_002874312.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
gi|297320149|gb|EFH50571.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
Length = 748
Score = 632 bits (1631), Expect = e-179, Method: Compositional matrix adjust.
Identities = 310/364 (85%), Positives = 342/364 (93%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+WVKKL+RKYLDNPLNIDLVG+QDEKLAEGIKLYAI+TT+TSKRTILSDLIT
Sbjct: 287 MLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLIT 346
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFTQTKRDADEVSLAL++ IA+EALHGDISQHQRERTLN FRQGKFTVLVA
Sbjct: 347 VYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVA 406
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGRAGKEG+AILM TSSQ+RTVRSLE
Sbjct: 407 TDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLE 466
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGC FEF+SPP V D+LESSA+QVVATLN VHP+S++FF+ TAQ+L EEKGTDALAAA
Sbjct: 467 RDVGCHFEFISPPTVGDLLESSADQVVATLNAVHPDSIKFFSATAQKLYEEKGTDALAAA 526
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LA LSGFS+PPSSRSL++HE+GWVTLQL RD +RGF+SARSV GFLSDVY TAADE+G
Sbjct: 527 LAHLSGFSQPPSSRSLLSHEKGWVTLQLIRDPTNARGFLSARSVTGFLSDVYRTAADEVG 586
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KI +IADDRVQGAVFDLPEEIAKELL K++P GN++S ITKLP LQDDGPSSDNYGRFSS
Sbjct: 587 KIFLIADDRVQGAVFDLPEEIAKELLEKEVPEGNSLSMITKLPPLQDDGPSSDNYGRFSS 646
Query: 361 RDRF 364
RDR
Sbjct: 647 RDRM 650
>gi|79328737|ref|NP_001031943.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
gi|108861893|sp|Q8L7S8.2|RH3_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
AltName: Full=Protein EMBRYO DEFECTIVE 1138; Flags:
Precursor
gi|19347898|gb|AAL85971.1| unknown protein [Arabidopsis thaliana]
gi|20259537|gb|AAM13888.1| unknown protein [Arabidopsis thaliana]
gi|20453225|gb|AAM19851.1| At5g26752 [Arabidopsis thaliana]
gi|21689779|gb|AAM67533.1| unknown protein [Arabidopsis thaliana]
gi|23397145|gb|AAN31856.1| unknown protein [Arabidopsis thaliana]
gi|25090432|gb|AAN72300.1| At5g26752/At5g26752 [Arabidopsis thaliana]
gi|27311701|gb|AAO00816.1| Unknown protein [Arabidopsis thaliana]
gi|110739485|dbj|BAF01652.1| hypothetical protein [Arabidopsis thaliana]
gi|332006182|gb|AED93565.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
Length = 748
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 309/364 (84%), Positives = 342/364 (93%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+WVKKL+RKYLDNPLNIDLVG+QDEKLAEGIKLYAI+TT+TSKRTILSDLIT
Sbjct: 287 MLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLIT 346
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFTQTKRDADEVSLAL++ IA+EALHGDISQHQRERTLN FRQGKFTVLVA
Sbjct: 347 VYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVA 406
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGRAGKEG+AILM TSSQ+RTVRSLE
Sbjct: 407 TDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLE 466
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGC FEF+SPP V D+LESSA+QVVATLNGVHP+S++FF+ TAQ+L EEKGTDALAAA
Sbjct: 467 RDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFFSATAQKLYEEKGTDALAAA 526
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LA LSGFS+PPSSRSL++HE+GWVTLQL RD +RGF+SARSV GFLSD+Y TAADE+G
Sbjct: 527 LAHLSGFSQPPSSRSLLSHEKGWVTLQLIRDPTNARGFLSARSVTGFLSDLYRTAADEVG 586
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KI +IADDR+QGAVFDLPEEIAKELL K +P GN++S ITKLP LQDDGPSSDNYGRFSS
Sbjct: 587 KIFLIADDRIQGAVFDLPEEIAKELLEKDVPEGNSLSMITKLPPLQDDGPSSDNYGRFSS 646
Query: 361 RDRF 364
RDR
Sbjct: 647 RDRM 650
>gi|30690260|ref|NP_680225.2| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
gi|20856975|gb|AAM26693.1| At5g26743 [Arabidopsis thaliana]
gi|28416497|gb|AAO42779.1| At5g26743 [Arabidopsis thaliana]
gi|332006181|gb|AED93564.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
Length = 747
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 309/364 (84%), Positives = 342/364 (93%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+WVKKL+RKYLDNPLNIDLVG+QDEKLAEGIKLYAI+TT+TSKRTILSDLIT
Sbjct: 287 MLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLIT 346
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFTQTKRDADEVSLAL++ IA+EALHGDISQHQRERTLN FRQGKFTVLVA
Sbjct: 347 VYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVA 406
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGRAGKEG+AILM TSSQ+RTVRSLE
Sbjct: 407 TDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLE 466
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGC FEF+SPP V D+LESSA+QVVATLNGVHP+S++FF+ TAQ+L EEKGTDALAAA
Sbjct: 467 RDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFFSATAQKLYEEKGTDALAAA 526
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LA LSGFS+PPSSRSL++HE+GWVTLQL RD +RGF+SARSV GFLSD+Y TAADE+G
Sbjct: 527 LAHLSGFSQPPSSRSLLSHEKGWVTLQLIRDPTNARGFLSARSVTGFLSDLYRTAADEVG 586
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KI +IADDR+QGAVFDLPEEIAKELL K +P GN++S ITKLP LQDDGPSSDNYGRFSS
Sbjct: 587 KIFLIADDRIQGAVFDLPEEIAKELLEKDVPEGNSLSMITKLPPLQDDGPSSDNYGRFSS 646
Query: 361 RDRF 364
RDR
Sbjct: 647 RDRM 650
>gi|334187954|ref|NP_001190402.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
gi|332006183|gb|AED93566.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
Length = 655
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 309/364 (84%), Positives = 342/364 (93%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+WVKKL+RKYLDNPLNIDLVG+QDEKLAEGIKLYAI+TT+TSKRTILSDLIT
Sbjct: 194 MLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLIT 253
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFTQTKRDADEVSLAL++ IA+EALHGDISQHQRERTLN FRQGKFTVLVA
Sbjct: 254 VYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVA 313
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGRAGKEG+AILM TSSQ+RTVRSLE
Sbjct: 314 TDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLE 373
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGC FEF+SPP V D+LESSA+QVVATLNGVHP+S++FF+ TAQ+L EEKGTDALAAA
Sbjct: 374 RDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFFSATAQKLYEEKGTDALAAA 433
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LA LSGFS+PPSSRSL++HE+GWVTLQL RD +RGF+SARSV GFLSD+Y TAADE+G
Sbjct: 434 LAHLSGFSQPPSSRSLLSHEKGWVTLQLIRDPTNARGFLSARSVTGFLSDLYRTAADEVG 493
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KI +IADDR+QGAVFDLPEEIAKELL K +P GN++S ITKLP LQDDGPSSDNYGRFSS
Sbjct: 494 KIFLIADDRIQGAVFDLPEEIAKELLEKDVPEGNSLSMITKLPPLQDDGPSSDNYGRFSS 553
Query: 361 RDRF 364
RDR
Sbjct: 554 RDRM 557
>gi|22135801|gb|AAM91087.1| At5g26740 [Arabidopsis thaliana]
Length = 748
Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust.
Identities = 308/364 (84%), Positives = 341/364 (93%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+WVKKL+RKYLDNPLNIDLVG+QDEKLAEGIKLYAI+TT+TSKRTILSDLIT
Sbjct: 287 MLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLIT 346
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGK IVFTQTKRDADEVSLAL++ IA+EALHGDISQHQRERTLN FRQGKFTVLVA
Sbjct: 347 VYAKGGKNIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVA 406
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGRAGKEG+AILM TSSQ+RTVRSLE
Sbjct: 407 TDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLE 466
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGC FEF+SPP V D+LESSA+QVVATLNGVHP+S++FF+ TAQ+L EEKGTDALAAA
Sbjct: 467 RDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFFSATAQKLYEEKGTDALAAA 526
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LA LSGFS+PPSSRSL++HE+GWVTLQL RD +RGF+SARSV GFLSD+Y TAADE+G
Sbjct: 527 LAHLSGFSQPPSSRSLLSHEKGWVTLQLIRDPTNARGFLSARSVTGFLSDLYRTAADEVG 586
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KI +IADDR+QGAVFDLPEEIAKELL K +P GN++S ITKLP LQDDGPSSDNYGRFSS
Sbjct: 587 KIFLIADDRIQGAVFDLPEEIAKELLEKDVPEGNSLSMITKLPPLQDDGPSSDNYGRFSS 646
Query: 361 RDRF 364
RDR
Sbjct: 647 RDRM 650
>gi|108711872|gb|ABF99667.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
gi|215686855|dbj|BAG89705.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 597
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 296/362 (81%), Positives = 333/362 (91%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP WVKKLSR+YL+NPL IDLVG+QDEKLAEGIKLYAI T+TSKRT+LSDLIT
Sbjct: 126 MLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLIT 185
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFT+TKRDADEVSLALT+ IASEALHGDISQHQRERTLNGFRQGKFTVLVA
Sbjct: 186 VYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVA 245
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK GTAILMFT+SQRRTVRSLE
Sbjct: 246 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLE 305
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGC+F+F+SPP +EDVLESSAE V+ATL GVH ES+++F P A+RL EE G +ALA+A
Sbjct: 306 RDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAERLQEELGPNALASA 365
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LA LSGFS+PPSSRSLI+HEQGWVTLQLTRD + RGF S RSV GFLSDV AADE+G
Sbjct: 366 LAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRGFFSPRSVTGFLSDVSSAAADEVG 425
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KI + AD++VQGAVFDLPEEIA++LL+ ++PPGNTI+K+TKLPALQDDGP++D+YGRFS+
Sbjct: 426 KIFLTADEKVQGAVFDLPEEIARDLLSMELPPGNTITKVTKLPALQDDGPATDSYGRFSN 485
Query: 361 RD 362
D
Sbjct: 486 SD 487
>gi|108711873|gb|ABF99668.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
Length = 596
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 296/362 (81%), Positives = 333/362 (91%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP WVKKLSR+YL+NPL IDLVG+QDEKLAEGIKLYAI T+TSKRT+LSDLIT
Sbjct: 126 MLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLIT 185
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFT+TKRDADEVSLALT+ IASEALHGDISQHQRERTLNGFRQGKFTVLVA
Sbjct: 186 VYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVA 245
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK GTAILMFT+SQRRTVRSLE
Sbjct: 246 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLE 305
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGC+F+F+SPP +EDVLESSAE V+ATL GVH ES+++F P A+RL EE G +ALA+A
Sbjct: 306 RDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAERLQEELGPNALASA 365
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LA LSGFS+PPSSRSLI+HEQGWVTLQLTRD + RGF S RSV GFLSDV AADE+G
Sbjct: 366 LAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRGFFSPRSVTGFLSDVSSAAADEVG 425
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KI + AD++VQGAVFDLPEEIA++LL+ ++PPGNTI+K+TKLPALQDDGP++D+YGRFS+
Sbjct: 426 KIFLTADEKVQGAVFDLPEEIARDLLSMELPPGNTITKVTKLPALQDDGPATDSYGRFSN 485
Query: 361 RD 362
D
Sbjct: 486 SD 487
>gi|218194025|gb|EEC76452.1| hypothetical protein OsI_14162 [Oryza sativa Indica Group]
Length = 779
Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust.
Identities = 296/362 (81%), Positives = 333/362 (91%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP WVKKLSR+YL+NPL IDLVG+QDEKLAEGIKLYAI T+TSKRT+LSDLIT
Sbjct: 308 MLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLIT 367
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFT+TKRDADEVSLALT+ IASEALHGDISQHQRERTLNGFRQGKFTVLVA
Sbjct: 368 VYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVA 427
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK GTAILMFT+SQRRTVRSLE
Sbjct: 428 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLE 487
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGC+F+F+SPP +EDVLESSAE V+ATL GVH ES+++F P A+RL EE G +ALA+A
Sbjct: 488 RDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAERLQEELGPNALASA 547
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LA LSGFS+PPSSRSLI+HEQGWVTLQLTRD + RGF S RSV GFLSDV AADE+G
Sbjct: 548 LAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRGFFSPRSVTGFLSDVSSAAADEVG 607
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KI + AD++VQGAVFDLPEEIA++LL+ ++PPGNTI+K+TKLPALQDDGP++D+YGRFS+
Sbjct: 608 KIFLTADEKVQGAVFDLPEEIARDLLSMELPPGNTITKVTKLPALQDDGPATDSYGRFSN 667
Query: 361 RD 362
D
Sbjct: 668 SD 669
>gi|115456345|ref|NP_001051773.1| Os03g0827700 [Oryza sativa Japonica Group]
gi|113550244|dbj|BAF13687.1| Os03g0827700, partial [Oryza sativa Japonica Group]
Length = 723
Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust.
Identities = 296/362 (81%), Positives = 333/362 (91%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP WVKKLSR+YL+NPL IDLVG+QDEKLAEGIKLYAI T+TSKRT+LSDLIT
Sbjct: 252 MLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLIT 311
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFT+TKRDADEVSLALT+ IASEALHGDISQHQRERTLNGFRQGKFTVLVA
Sbjct: 312 VYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVA 371
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK GTAILMFT+SQRRTVRSLE
Sbjct: 372 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLE 431
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGC+F+F+SPP +EDVLESSAE V+ATL GVH ES+++F P A+RL EE G +ALA+A
Sbjct: 432 RDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAERLQEELGPNALASA 491
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LA LSGFS+PPSSRSLI+HEQGWVTLQLTRD + RGF S RSV GFLSDV AADE+G
Sbjct: 492 LAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRGFFSPRSVTGFLSDVSSAAADEVG 551
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KI + AD++VQGAVFDLPEEIA++LL+ ++PPGNTI+K+TKLPALQDDGP++D+YGRFS+
Sbjct: 552 KIFLTADEKVQGAVFDLPEEIARDLLSMELPPGNTITKVTKLPALQDDGPATDSYGRFSN 611
Query: 361 RD 362
D
Sbjct: 612 SD 613
>gi|143455890|sp|Q0DM51.2|RH3_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
Flags: Precursor
gi|18855061|gb|AAL79753.1|AC096687_17 putative RNA helicase [Oryza sativa Japonica Group]
Length = 758
Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust.
Identities = 296/362 (81%), Positives = 333/362 (91%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP WVKKLSR+YL+NPL IDLVG+QDEKLAEGIKLYAI T+TSKRT+LSDLIT
Sbjct: 287 MLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLIT 346
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFT+TKRDADEVSLALT+ IASEALHGDISQHQRERTLNGFRQGKFTVLVA
Sbjct: 347 VYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVA 406
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK GTAILMFT+SQRRTVRSLE
Sbjct: 407 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLE 466
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGC+F+F+SPP +EDVLESSAE V+ATL GVH ES+++F P A+RL EE G +ALA+A
Sbjct: 467 RDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAERLQEELGPNALASA 526
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LA LSGFS+PPSSRSLI+HEQGWVTLQLTRD + RGF S RSV GFLSDV AADE+G
Sbjct: 527 LAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRGFFSPRSVTGFLSDVSSAAADEVG 586
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KI + AD++VQGAVFDLPEEIA++LL+ ++PPGNTI+K+TKLPALQDDGP++D+YGRFS+
Sbjct: 587 KIFLTADEKVQGAVFDLPEEIARDLLSMELPPGNTITKVTKLPALQDDGPATDSYGRFSN 646
Query: 361 RD 362
D
Sbjct: 647 SD 648
>gi|148906285|gb|ABR16298.1| unknown [Picea sitchensis]
Length = 802
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 291/491 (59%), Positives = 352/491 (71%), Gaps = 41/491 (8%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS--KRTILSDL 58
MLFSATMP WVKKLSRK+L+NP+ IDLVG +EKLAEGIKLYA++TT +S KR+IL DL
Sbjct: 329 MLFSATMPGWVKKLSRKHLNNPMTIDLVGENEEKLAEGIKLYAVATTTSSNSKRSILGDL 388
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
ITV+AKGGKTIVFTQTKRDADE+SL L+S IA EALHGDISQHQRERTL GFR+GKF+ L
Sbjct: 389 ITVFAKGGKTIVFTQTKRDADEISLGLSSTIACEALHGDISQHQRERTLAGFREGKFSAL 448
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLDI NVDL+IHYE PNDPETFVHRSGRTGRAGKEG AILM+ S+ +R VRS
Sbjct: 449 VATDVAARGLDITNVDLVIHYEFPNDPETFVHRSGRTGRAGKEGIAILMYPSNGKRKVRS 508
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALA 238
LE +VGC+FE+++PP EDVLE+S + V L VHPE + F PTA +L+EEKGT+ALA
Sbjct: 509 LEHEVGCRFEYINPPRQEDVLETSTQHVAKALGSVHPELINIFLPTANKLMEEKGTNALA 568
Query: 239 AALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFS--RGFMSARSVMGFLSDVYPTAA 296
AALA+LSGFS+PPSSRSLI HE+GW TLQ+TR+S R ++AR +MG LS+++P AA
Sbjct: 569 AALARLSGFSQPPSSRSLITHEEGWTTLQMTRESTMPDGRQQLNARELMGILSEMWPAAA 628
Query: 297 DEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYG 356
D++GKI D + +GAVFDLP+++AKELL KQ PG T+SKIT+LP ++D+ P SD G
Sbjct: 629 DKVGKIRTYGDGKAEGAVFDLPKDVAKELLLKQALPGYTVSKITQLPVMEDEEPPSDRRG 688
Query: 357 RFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSFR 416
R+S R R S GG RG R++ SWG D S G + R
Sbjct: 689 RYSDRSASYR------SFGGGRG-------------RNTNSWGKRSNDDGDWSGGWKPRR 729
Query: 417 SGNNRGSR---------FSTSSDDDWLIGGSRSSR---------SSSRDSRSFGGACFNC 458
S + S FS S + G SS S S +RSF G+CF C
Sbjct: 730 SYGEKSSSGMGRGSSRPFSMSDSNRRSYGEKSSSGMGRGSSRPFSMSDSNRSFRGSCFVC 789
Query: 459 GKSGHRASECP 469
G+SGHRAS+CP
Sbjct: 790 GQSGHRASDCP 800
>gi|413932547|gb|AFW67098.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 449
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 285/435 (65%), Positives = 324/435 (74%), Gaps = 42/435 (9%)
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ VYAKGGKTIVFT+TK+DADEVSLALT+ IASEALHGDISQHQRERTLNGFRQGKFTVL
Sbjct: 33 LRVYAKGGKTIVFTRTKKDADEVSLALTTSIASEALHGDISQHQRERTLNGFRQGKFTVL 92
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK GTAILMFTSSQ+RTV S
Sbjct: 93 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQKRTVMS 152
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALA 238
LERDVGCKFEF+SPP +E+VLESSAE V+ATL GVHPES ++F A++L EE G ALA
Sbjct: 153 LERDVGCKFEFISPPSIEEVLESSAEHVIATLRGVHPESTQYFLGAAEKLTEELGPHALA 212
Query: 239 AALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE 298
+ALA LSGFS+PPSSRSLI++EQGWVTLQLTR+ + RGF S RSV GFLSDV AADE
Sbjct: 213 SALAHLSGFSQPPSSRSLISYEQGWVTLQLTREPGYGRGFFSPRSVTGFLSDVCSAAADE 272
Query: 299 IGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRF 358
+GKI+I AD+ VQGAVFDLPEEIAK+LL ++PPGNT++KI+KLPALQDD P++D+YGRF
Sbjct: 273 VGKIYITADENVQGAVFDLPEEIAKDLLTMEVPPGNTLTKISKLPALQDDSPATDSYGRF 332
Query: 359 SSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSFR-- 416
S+ +R S R W +D ED + RGGRS R
Sbjct: 333 SNDRG-----------------SRNRRSRGGGASRGRGGWDTDSEDRY--RRGGRSLRSD 373
Query: 417 ---------SGNNRGSRFSTSSDDDWLIG-----------GSRSSRSSSRD-SRSFGGAC 455
SG R S S+SS G RSS R+ SRSF GAC
Sbjct: 374 NDSWSDDDWSGGGRKSNRSSSSFGGRSSSYGSRGSPSPSFGVRSSSLGGRESSRSFSGAC 433
Query: 456 FNCGKSGHRASECPN 470
FNCG+SGHRAS+CPN
Sbjct: 434 FNCGESGHRASDCPN 448
>gi|168019686|ref|XP_001762375.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686453|gb|EDQ72842.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 689
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 254/475 (53%), Positives = 320/475 (67%), Gaps = 27/475 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+WVKKLS+KYL +PL IDLVG+ +EKLAEGIK+ A+ +KRT+L+DLI+
Sbjct: 232 MLFSATMPNWVKKLSKKYLKSPLTIDLVGDSNEKLAEGIKMLAVCIPPAAKRTVLNDLIS 291
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
V+ GKTIVFTQTKRDAD+V+ L + EALHGDI+Q QRERTL FR+G+F+VLVA
Sbjct: 292 VHGSVGKTIVFTQTKRDADDVASVLGRTLGCEALHGDITQSQRERTLASFREGRFSVLVA 351
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDL++HYE+PNDPETFVHRSGRTGRAGK+GTAILMF+ +Q+RT+R++E
Sbjct: 352 TDVAARGLDIPNVDLVVHYEIPNDPETFVHRSGRTGRAGKDGTAILMFSENQKRTMRNIE 411
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
DVGCKF +SPP +E+VL++S++ A + V+P+ F TA++L+E++G A AAA
Sbjct: 412 MDVGCKFTLMSPPQMEEVLQASSKAAKAVIQRVNPDVANVFLSTAEKLLEKEGPGAFAAA 471
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LA LSGFS+ P+ RSLI HE+G +TL++ R R MSAR VMG L+D++ AAD +G
Sbjct: 472 LAHLSGFSQLPAPRSLITHEEGLITLRMVRTEELPRA-MSARMVMGVLADIWDAAADNVG 530
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD-DGPSSDNYGRFS 359
KI II D ++QGAVFDLP+EIAKELL K + I I KLP L D DG + GR S
Sbjct: 531 KIRIIDDPKIQGAVFDLPQEIAKELLTKPRREEDVIESIKKLPKLVDLDG----DRGRGS 586
Query: 360 SRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGN 419
DR+ R G S M R R S D S+ G RS R +
Sbjct: 587 --DRYGRFGSRGGS------------GMRSSSPRGGRGGPSRGRDSGWSNDGDRSGRRSS 632
Query: 420 NRGSRFSTSSD------DDWLIGGSRSSRSSSRDSRSFGGACFNCGKSGHRASEC 468
R S D D L S + S R S SF G CF C + GHRA++C
Sbjct: 633 ERYQLLSLPPDLSKHYVDFLLFLSSLMAISHCRRS-SFAGVCFICNQPGHRAADC 686
>gi|168000743|ref|XP_001753075.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695774|gb|EDQ82116.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 793
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/350 (63%), Positives = 271/350 (77%), Gaps = 6/350 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+WVKKLSRKYL + L IDLVG DEKLA+ IKLYA++T +KR+IL+DLI
Sbjct: 322 MLFSATMPTWVKKLSRKYLHDALTIDLVGESDEKLADRIKLYAVATVPQAKRSILNDLIA 381
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VY KGGKTIVFTQTKRDAD+V+ A+ + EALHGDISQ QRE+TLN FR+G F+VLVA
Sbjct: 382 VYGKGGKTIVFTQTKRDADDVATAMARTLGCEALHGDISQSQREKTLNAFREGNFSVLVA 441
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDL+IHYE+PNDPETFVHRSGRTGRAGK+GTAILM++ Q RT+R +E
Sbjct: 442 TDVAARGLDIPNVDLVIHYEIPNDPETFVHRSGRTGRAGKDGTAILMYSDRQTRTMRLIE 501
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGCKF +S P VEDVL++S E + VHPE E F PTA+ L++E+G A AAA
Sbjct: 502 RDVGCKFTKISAPRVEDVLKASTESATDVIKRVHPEVAEVFMPTAEELLKEQGPHAFAAA 561
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGF--MSARSVMGFLSDVYPTAADE 298
LA L+GF++ P+SRSL+ HE+G TL+L R RG M+ R VMG LSD++PTA D+
Sbjct: 562 LAHLAGFTQLPTSRSLLTHEEGVTTLRLVR----PRGSRPMTPRVVMGVLSDIWPTAVDK 617
Query: 299 IGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDD 348
+GKI I+ D + GAVFDLPE++AKELL+K G I LP L++D
Sbjct: 618 VGKIKIVDDQKADGAVFDLPEDVAKELLSKPTRSGEVIDVCQSLPRLEED 667
>gi|168000763|ref|XP_001753085.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695784|gb|EDQ82126.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 638
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 254/474 (53%), Positives = 313/474 (66%), Gaps = 48/474 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP WVK+LS KYL+ PL I+LVG+ D+KLAEGI AI AT+KR+ILSDLIT
Sbjct: 209 MLFSATMPKWVKELSGKYLNRPLMINLVGDADDKLAEGITNLAIQLPATAKRSILSDLIT 268
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
V+AKGGKTIVFTQTKRDAD+V++A+ +++A ALHGDISQ QRE+TLN FR+G TVLVA
Sbjct: 269 VHAKGGKTIVFTQTKRDADDVAMAMGNLVACGALHGDISQLQREKTLNAFREGNITVLVA 328
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+PNVDL+IHYE+PND ETFVHR+GRTGRAGK GT ILMFT+ Q RT+R++E
Sbjct: 329 TDVAARGLDVPNVDLVIHYEIPNDSETFVHRTGRTGRAGKTGTNILMFTNQQMRTMRTIE 388
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
+V C+F+ + P V+DV+++S +QV L V F PTA+ L+EEKG DA AAA
Sbjct: 389 SNVKCRFQMIGAPHVKDVMQASFDQVRGALKNVDESLAAEFRPTAESLLEEKGPDAFAAA 448
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LA LSGFS+ P SRSL+ HE G TL+L R R ++AR V G LS + +AAD +G
Sbjct: 449 LAHLSGFSQLPPSRSLLTHEPGMTTLRLMRSGG--RPALNARGVSGVLSGLSRSAADSVG 506
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDD----GPSSDNYG 356
KI II D RV GAVFDLP+++AKE+L G+ TKLP + + G SS +G
Sbjct: 507 KICIIDDRRVNGAVFDLPDDVAKEVLALPNQDGDVFDVPTKLPPIISEERRGGQSSGMFG 566
Query: 357 RFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSFR 416
RF GGGS SRGG MDR +D G SS RS
Sbjct: 567 RF--------GGGSD-SRGG----------MDR----------GNDRFGRFSSSSPRSSS 597
Query: 417 SGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSRSFGGACFNCGKSGHRASECPN 470
S R RFS+ D GG R+F G C CG+ GHRA++CP+
Sbjct: 598 SERERFGRFSSKQSDR---GG----------DRTFSGTCHVCGQRGHRANDCPS 638
>gi|302821639|ref|XP_002992481.1| hypothetical protein SELMODRAFT_30997 [Selaginella moellendorffii]
gi|300139683|gb|EFJ06419.1| hypothetical protein SELMODRAFT_30997 [Selaginella moellendorffii]
Length = 641
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/357 (58%), Positives = 270/357 (75%), Gaps = 5/357 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP WV+KLSRK+L+ PL IDLVG DEKLAEGIKLYA+ T+ +KR ILSD+IT
Sbjct: 204 MLFSATMPGWVQKLSRKFLNKPLTIDLVGESDEKLAEGIKLYAVQTSQAAKRKILSDVIT 263
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VY KGGKTIVFTQTKRDA+EVS+A+ + EALHGDI+Q QRE+TL FR+G+F +LVA
Sbjct: 264 VYGKGGKTIVFTQTKRDAEEVSMAMNRTLGCEALHGDIAQFQREKTLAAFREGRFLILVA 323
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDI +VDLIIHY+LP D ETFVHRSGRTGRAGK+G+A++ F+ +RR ++ E
Sbjct: 324 TDVAARGLDITDVDLIIHYDLPRDSETFVHRSGRTGRAGKDGSALVFFSPQERRILKHFE 383
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
R VGC F+F S P ++VL +S+ Q V + GVHP+ + F TA++L+EE GT A AAA
Sbjct: 384 RQVGCSFQFKSMPHFDEVLAASSSQAVELIKGVHPDLKQVFMATAEKLLEEHGTAAFAAA 443
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
+A +SGFS+PP RSLI+ E G++TL+ +R A ++ R V+G ++ + AAD IG
Sbjct: 444 IAHMSGFSQPPEQRSLISLEAGYMTLKFSR--APGNFPLAVRHVVGAIASLSEKAADNIG 501
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGR 357
K+ +I + V+GAVFDLPE IA +LL+K +P G I I +LP+LQD S D+ GR
Sbjct: 502 KVQMIDEKNVEGAVFDLPEHIATDLLSKSMPSGTRIEAIKELPSLQD---SWDDGGR 555
>gi|302788684|ref|XP_002976111.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii]
gi|300156387|gb|EFJ23016.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii]
Length = 597
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 193/353 (54%), Positives = 256/353 (72%), Gaps = 15/353 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMPSW++ L+ KYL NP IDLVG ++K+AEGIKLYA+ST +K +L+DL+T
Sbjct: 187 MLFSATMPSWIRNLTSKYLKNPTMIDLVGENEDKVAEGIKLYAVSTNDLAKNKLLADLLT 246
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGK IVFT+TKRD D+V+ ++ I EALHGDISQ+QRE+TL+GFR G+F VLVA
Sbjct: 247 VYAKGGKAIVFTKTKRDTDDVAAVMSRSIGCEALHGDISQYQREKTLSGFRDGRFNVLVA 306
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDLI+HYE+P D ETFVHRSGRTGRAGK+GT ILM+T +Q+R +R++E
Sbjct: 307 TDVAARGLDIPNVDLIVHYEVPGDSETFVHRSGRTGRAGKKGTCILMYTLNQKRVLRTIE 366
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
+VGCKFE + PP EDVL SS++ ++ VHP+ + F P AQ+L+EE+G +ALAAA
Sbjct: 367 SEVGCKFEAIGPPAAEDVLASSSDHASESIKSVHPDLAKLFLPAAQKLLEEQGVNALAAA 426
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLT-----RDSAFSRGFMSARSVMGFLSDVYPTA 295
+A +SG ++ P RSL+ +E+G++TLQLT SA S M S G
Sbjct: 427 MAHVSGVTQLPPKRSLLTYEEGYMTLQLTGGNLIDSSAVSSAVMQLSSKAGM-------- 478
Query: 296 ADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDD 348
+G++ +++ G VFDLPE++AKE+L Q N ++ + LP LQ+D
Sbjct: 479 --SMGRVTMLSSSTATGGVFDLPEDLAKEILALQNVGSNVLTAVKVLPDLQED 529
>gi|302817066|ref|XP_002990210.1| hypothetical protein SELMODRAFT_30996 [Selaginella moellendorffii]
gi|300142065|gb|EFJ08770.1| hypothetical protein SELMODRAFT_30996 [Selaginella moellendorffii]
Length = 640
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 208/377 (55%), Positives = 271/377 (71%), Gaps = 25/377 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP WV+KLSRK+L+ PL IDLVG DEKLAEGIKLYA+ T+ +KR ILSD+IT
Sbjct: 186 MLFSATMPGWVQKLSRKFLNKPLTIDLVGESDEKLAEGIKLYAVQTSQAAKRKILSDVIT 245
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VY KGGKTIVFTQTKRDA+EVS+A+ + EALHGDI+Q QRE+TL FR+G+F +LVA
Sbjct: 246 VYGKGGKTIVFTQTKRDAEEVSMAMNRTLGCEALHGDIAQFQREKTLAAFREGRFLILVA 305
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDI +VDLIIHY+LP D ETFVHRSGRTGRAGK+G+A++ F+ +RR ++ E
Sbjct: 306 TDVAARGLDITDVDLIIHYDLPRDSETFVHRSGRTGRAGKDGSALVFFSPQERRILKHFE 365
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
R VGC F+F S P ++VL +S+ Q V + GVHP+ + F TA++L++E GT A AAA
Sbjct: 366 RQVGCSFQFKSMPHFDEVLAASSSQAVELIKGVHPDLKQVFMATAEKLLDEHGTAAFAAA 425
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
+A +SGFS+PP RSLI+ E G++TL+ +R A ++ R V+G ++ + AAD IG
Sbjct: 426 IAHMSGFSQPPEQRSLISLEAGYMTLKFSR--APGNFPLAVRHVVGAIASLSEKAADNIG 483
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKI--------------------T 340
K+ +I + V+GAVFDLPE IA +LL+K +P G I I +
Sbjct: 484 KVQMIDEKNVEGAVFDLPEHIATDLLSKSMPSGTRIEAIKEVFLFLHSFDLSPTLHGSLS 543
Query: 341 KLPALQDDGPSSDNYGR 357
+LP+LQD S D+ GR
Sbjct: 544 QLPSLQD---SWDDGGR 557
>gi|302769696|ref|XP_002968267.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii]
gi|300163911|gb|EFJ30521.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii]
Length = 614
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 193/353 (54%), Positives = 256/353 (72%), Gaps = 15/353 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMPSW++ L+ KYL NP IDLVG ++K+AEGIKLYA+ST +K +L+DL+T
Sbjct: 187 MLFSATMPSWIRNLTSKYLKNPTMIDLVGENEDKVAEGIKLYAVSTNDLAKNKLLADLLT 246
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGK IVFT+TKRD D+V+ ++ I EALHGDISQ+QRE+TL+GFR G+F VLVA
Sbjct: 247 VYAKGGKAIVFTKTKRDTDDVAAVMSRSIGCEALHGDISQYQREKTLSGFRDGRFNVLVA 306
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDLI+HYE+P D ETFVHRSGRTGRAGK+GT ILM+T +Q+R +R++E
Sbjct: 307 TDVAARGLDIPNVDLIVHYEVPGDSETFVHRSGRTGRAGKKGTCILMYTLNQKRVLRTIE 366
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
+VGCKFE + PP EDVL SS++ ++ VHP+ + F P AQ+L+EE+G ALAAA
Sbjct: 367 SEVGCKFEAIGPPAAEDVLASSSDHASESIKSVHPDLAKLFLPAAQKLLEEQGVTALAAA 426
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLT-----RDSAFSRGFMSARSVMGFLSDVYPTA 295
+A +SG ++ P RSL+ +E+G++TLQLT SA S M S G
Sbjct: 427 MAHVSGVTQLPPKRSLLTYEEGYMTLQLTGGNLIDSSAVSSAVMQLSSKAGM-------- 478
Query: 296 ADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDD 348
+G++ +++ G VFDLPE++AKE+L Q N ++ + +LP LQ+D
Sbjct: 479 --SMGRVTMLSSSTATGGVFDLPEDLAKEILALQNVGSNVLTAVWQLPDLQED 529
>gi|222626093|gb|EEE60225.1| hypothetical protein OsJ_13207 [Oryza sativa Japonica Group]
Length = 697
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/266 (67%), Positives = 218/266 (81%), Gaps = 4/266 (1%)
Query: 97 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 156
D+ Q E+ G K + T + R + + ++ IIHYELPNDPETFVHRSGRTG
Sbjct: 326 DLVGDQDEKLAEGI---KLYAIPLTSTSKRTV-LSDLITIIHYELPNDPETFVHRSGRTG 381
Query: 157 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 216
RAGK GTAILMFT+SQRRTVRSLERDVGC+F+F+SPP +EDVLESSAE V+ATL GVH E
Sbjct: 382 RAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTE 441
Query: 217 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSR 276
S+++F P A+RL EE G +ALA+ALA LSGFS+PPSSRSLI+HEQGWVTLQLTRD + R
Sbjct: 442 SIQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGR 501
Query: 277 GFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTI 336
GF S RSV GFLSDV AADE+GKI + AD++VQGAVFDLPEEIA++LL+ ++PPGNTI
Sbjct: 502 GFFSPRSVTGFLSDVSSAAADEVGKIFLTADEKVQGAVFDLPEEIARDLLSMELPPGNTI 561
Query: 337 SKITKLPALQDDGPSSDNYGRFSSRD 362
+K+TKLPALQDDGP++D+YGRFS+ D
Sbjct: 562 TKVTKLPALQDDGPATDSYGRFSNSD 587
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/61 (83%), Positives = 57/61 (93%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP WVKKLSR+YL+NPL IDLVG+QDEKLAEGIKLYAI T+TSKRT+LSDLIT
Sbjct: 301 MLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLIT 360
Query: 61 V 61
+
Sbjct: 361 I 361
>gi|3047077|gb|AAC13590.1| contains similarity to the conserved C-terminal domain of helicases
(Pfam: helicase_C.hmm, score: 90.11), similar to
DEAD-box h, partial [Arabidopsis thaliana]
Length = 477
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 173/189 (91%), Positives = 185/189 (97%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+WVKKL+RKYLDNPLNIDLVG+QDEKLAEGIKLYAI+TT+TSKRTILSDLIT
Sbjct: 289 MLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLIT 348
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFTQTKRDADEVSLAL++ IA+EALHGDISQHQRERTLN FRQGKFTVLVA
Sbjct: 349 VYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVA 408
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGRAGKEG+AILM TSSQ+RTVRSLE
Sbjct: 409 TDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLE 468
Query: 181 RDVGCKFEF 189
RDVGC FEF
Sbjct: 469 RDVGCHFEF 477
>gi|357442015|ref|XP_003591285.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355480333|gb|AES61536.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 615
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 162/211 (76%), Positives = 191/211 (90%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP WVKKLSRK+L+NPL IDLVG+++EKLAEGIKLYA+S T+TSKR IL LI+
Sbjct: 271 MLFSATMPGWVKKLSRKHLNNPLTIDLVGDREEKLAEGIKLYAVSATSTSKRRILYGLIS 330
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
YA GGKTIVFT+TKRDADE+SL+LT+ IAS+ LHGDISQ+QRE+TLNGFRQG+FTVLVA
Sbjct: 331 AYANGGKTIVFTRTKRDADEISLSLTNSIASKPLHGDISQYQREKTLNGFRQGRFTVLVA 390
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDLIIHYELP+ PETFVHRSGRTGRAGKEGTA++M+T+SQ+RTV S E
Sbjct: 391 TDVASRGLDIPNVDLIIHYELPDGPETFVHRSGRTGRAGKEGTAVVMYTTSQKRTVISFE 450
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLN 211
R+VGC FEF+SPP ++D+ ESS QVV T +
Sbjct: 451 REVGCTFEFISPPPMQDLPESSTRQVVPTFD 481
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 36/53 (67%), Gaps = 8/53 (15%)
Query: 425 FSTSSDDDWLIGGSRSSRSSSRDSR-------SFGGACFNCGKSGHRASECPN 470
F T DDDWLIGG RSS SS + S+GGACF+CG+ GHRAS+CPN
Sbjct: 564 FKT-GDDDWLIGGRRSSGYSSSNRSSSPNRRGSYGGACFSCGQPGHRASDCPN 615
>gi|84468310|dbj|BAE71238.1| hypothetical protein [Trifolium pratense]
Length = 402
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 161/210 (76%), Positives = 187/210 (89%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP WVKKLSRK+L+NP IDLVG+++EKLAEGIKLYA+ T+ SKR ILS LI+
Sbjct: 68 MLFSATMPGWVKKLSRKHLNNPKTIDLVGDREEKLAEGIKLYAVPATSISKRRILSGLIS 127
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
Y KGGKTIVFT+TKRDADE+S +LTS IAS+ALHGDISQ+QRERTL+GFRQG+FTVLVA
Sbjct: 128 AYGKGGKTIVFTRTKRDADEISYSLTSSIASKALHGDISQYQRERTLDGFRQGRFTVLVA 187
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDLIIHYELP+ PETFVHRSGRTGRAGKEG A++MFT+SQ+RTV SLE
Sbjct: 188 TDVASRGLDIPNVDLIIHYELPDGPETFVHRSGRTGRAGKEGAAVVMFTASQKRTVISLE 247
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATL 210
RDVG +FEF+ PP +ED+ E QVV+TL
Sbjct: 248 RDVGSRFEFIRPPPMEDLPELPTRQVVSTL 277
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 450 SFGGACFNCGKSGHRASECPN 470
++ G CFNCG+SGHRA +CPN
Sbjct: 377 NYRGPCFNCGQSGHRALDCPN 397
>gi|255077858|ref|XP_002502509.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299]
gi|226517774|gb|ACO63767.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299]
Length = 790
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 165/337 (48%), Positives = 231/337 (68%), Gaps = 19/337 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMPSWV ++++KYL + + IDLVG+Q++K+A+ I + + + + TS+ TIL+DL+TV
Sbjct: 316 LFSATMPSWVTRITQKYLADHVTIDLVGSQEQKVADTIDVMSCACSHTSRTTILADLVTV 375
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 121
Y KG K I FTQTKR+ADEV+ AL +A+E LHGDI+Q QRERTL FR G+F+VLVAT
Sbjct: 376 YGKGAKAICFTQTKREADEVTAALGRRMATEVLHGDIAQAQRERTLKRFRDGRFSVLVAT 435
Query: 122 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 181
DVAARGLDI +VDL++HYELP+D E+FVHR GRTGRA K+G AI M+T ++ +RS+ R
Sbjct: 436 DVAARGLDITDVDLVVHYELPHDTESFVHRCGRTGRANKKGAAIAMYTPREKSRIRSIVR 495
Query: 182 DVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRL---IEEKGTD--- 235
+ G KF ++PP +V+ SSAEQ ++ V E + +FTPTA+++ ++ G D
Sbjct: 496 ETGVKFRVINPPTAAEVMTSSAEQASIEIDLVDDELLPYFTPTAEKILAAVKNGGADGRS 555
Query: 236 ---ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMS-ARSVMGFLSDV 291
LAAALA LSG + PP RS++ + G T+ +RG M R ++ +S+V
Sbjct: 556 ESEVLAAALAALSGHTEPPPPRSMLTGDVGQTTM-------IARGNMILPRDLLRAMSEV 608
Query: 292 YPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNK 328
AAD +G+I I+AD+ G FD+ E K LL +
Sbjct: 609 SRAAADGVGRIRILADN--SGLCFDMQHEQVKPLLEE 643
>gi|384244948|gb|EIE18444.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 674
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 163/337 (48%), Positives = 222/337 (65%), Gaps = 17/337 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGN-QDEKLAEGIKLYAISTTATSKRTILSDLI 59
MLFSATMPSWVK ++RK+L NP +DLVG+ Q K+ + IK A+ T ++R+IL DLI
Sbjct: 232 MLFSATMPSWVKNITRKHLKNPALVDLVGDAQSGKMPDAIKTMAVHVTQEARRSILVDLI 291
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
TV+A GGK IVFTQTKR+ADEV+ +L+ + EALHGDISQ QRE+ L FR GKFT LV
Sbjct: 292 TVHALGGKCIVFTQTKREADEVAASLSLVHPCEALHGDISQAQREQVLKNFRNGKFTALV 351
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDIP+VDL++HY+LP D E F+HRSGRTGRAGK G+ I + R R +
Sbjct: 352 ATDVAARGLDIPDVDLVVHYDLPRDTEAFLHRSGRTGRAGKTGSTIAVVLPRDRSYFRRM 411
Query: 180 ERDVGCK-FEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGT--DA 236
++ K E++S P V+E+SA+QV+ L+ V + +EFF P A +L+ E+G DA
Sbjct: 412 CAEIKLKDVEYISSPSPSAVMEASAKQVLRRLDNVDEKVIEFFAPAA-KLVLERGDKHDA 470
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT----RDSAFSRGFMSARSVMGFLSDVY 292
+ ALA LSG P RSLI E G VT+++ R + R+V+G
Sbjct: 471 MCRALAALSGLIEVPKPRSLITQEVGLVTMRVMSRPGRITLPGHVMTIVRNVIG------ 524
Query: 293 PTAADEIGKIHIIADDR--VQGAVFDLPEEIAKELLN 327
+G++ ++ DDR ++GA FD+P+EIA +++
Sbjct: 525 ADGVTGLGRVRLLQDDRAGMEGAAFDVPQEIADKMME 561
>gi|303275259|ref|XP_003056927.1| DEAD/DEAH box RNA helicase [Micromonas pusilla CCMP1545]
gi|226461279|gb|EEH58572.1| DEAD/DEAH box RNA helicase [Micromonas pusilla CCMP1545]
Length = 803
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 166/358 (46%), Positives = 231/358 (64%), Gaps = 20/358 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMPSWVK+L+RKYL +NIDLVG+ +K+A+ I + + + + S+ IL+DL+TV
Sbjct: 325 LFSATMPSWVKQLTRKYLKEHVNIDLVGDSKQKVADTIDILSCACSHQSRTMILADLVTV 384
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 121
Y KG K I FTQTKR+ADEV+ AL +A+E LHGDI+Q QRERTL FR +F+VLVAT
Sbjct: 385 YGKGAKAICFTQTKREADEVTAALGRRMATEVLHGDIAQAQRERTLKRFRDNRFSVLVAT 444
Query: 122 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 181
DVAARGLDI +VDL++H+ELPND E+FVHR GRTGRA K GTAI MFT + +R++ R
Sbjct: 445 DVAARGLDITDVDLVVHFELPNDTESFVHRCGRTGRANKRGTAIAMFTPRENYRLRTIVR 504
Query: 182 DVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEE---------K 232
+ G F+ ++ P +V+ SSA Q ++ V E + +FTPTA+ ++EE
Sbjct: 505 ETGVTFKSINAPTPAEVMTSSAVQAKHEMSLVDDELLPYFTPTAEAILEEVRAAGGNGRS 564
Query: 233 GTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFM-SARSVMGFLSDV 291
+ LAAALA LSG + PP RSL+ + G T+ ++G M R ++ LS V
Sbjct: 565 EAETLAAALAALSGHTEPPPPRSLLTSDVGLTTM-------VAKGHMLLPRDLLRALSMV 617
Query: 292 YPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELL-NKQIPPGNTISKITKLPALQDD 348
AAD +G+I I+AD+ G FD+ I +++ + + G +S LP L ++
Sbjct: 618 NRAAADGVGRIRILADN--SGLCFDMNHTIVNDVIASAEELEGMELSVCASLPELVEE 673
>gi|296086337|emb|CBI31778.3| unnamed protein product [Vitis vinifera]
Length = 568
Score = 281 bits (718), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 132/187 (70%), Positives = 154/187 (82%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
M+FSATMPSW++KL++KYL NPL IDLVG+ D+KLAEGI LY+I++ K +I+ LIT
Sbjct: 296 MMFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGPLIT 355
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+AKGGK IVFTQTKRDAD ++ A+ EALHGDISQ QRERTL+GFR G F VLVA
Sbjct: 356 EHAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVA 415
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDLIIHYELPN E FVHRSGRTGRAGK+GTAIL++ Q RTVR +E
Sbjct: 416 TDVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTVRFIE 475
Query: 181 RDVGCKF 187
RD+GCKF
Sbjct: 476 RDIGCKF 482
>gi|225446899|ref|XP_002284103.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Vitis
vinifera]
Length = 666
Score = 280 bits (717), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 132/187 (70%), Positives = 154/187 (82%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
M+FSATMPSW++KL++KYL NPL IDLVG+ D+KLAEGI LY+I++ K +I+ LIT
Sbjct: 296 MMFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGPLIT 355
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+AKGGK IVFTQTKRDAD ++ A+ EALHGDISQ QRERTL+GFR G F VLVA
Sbjct: 356 EHAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVA 415
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDLIIHYELPN E FVHRSGRTGRAGK+GTAIL++ Q RTVR +E
Sbjct: 416 TDVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTVRFIE 475
Query: 181 RDVGCKF 187
RD+GCKF
Sbjct: 476 RDIGCKF 482
>gi|147770303|emb|CAN60235.1| hypothetical protein VITISV_028850 [Vitis vinifera]
Length = 666
Score = 280 bits (717), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 132/187 (70%), Positives = 154/187 (82%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
M+FSATMPSW++KL++KYL NPL IDLVG+ D+KLAEGI LY+I++ K +I+ LIT
Sbjct: 296 MMFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGPLIT 355
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+AKGGK IVFTQTKRDAD ++ A+ EALHGDISQ QRERTL+GFR G F VLVA
Sbjct: 356 EHAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVA 415
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDLIIHYELPN E FVHRSGRTGRAGK+GTAIL++ Q RTVR +E
Sbjct: 416 TDVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTVRFIE 475
Query: 181 RDVGCKF 187
RD+GCKF
Sbjct: 476 RDIGCKF 482
>gi|412988910|emb|CCO15501.1| predicted protein [Bathycoccus prasinos]
Length = 935
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 166/378 (43%), Positives = 221/378 (58%), Gaps = 31/378 (8%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
LFSATMP WVKKL +K+L + +NIDLVG K+ + I L + S SK +L DL+T
Sbjct: 416 FLFSATMPHWVKKLQQKFLVDQVNIDLVGEDTGKINKDIDLMSCSVAFPSKCAVLMDLVT 475
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
V+AKG KTIVFTQTKRDADEV+ +L +++E LHGDI+Q QRERTL FRQ KF+VLVA
Sbjct: 476 VHAKGNKTIVFTQTKRDADEVTASLGKRVSTEVLHGDIAQAQRERTLQRFRQDKFSVLVA 535
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ NVDL++HYELPN+ E+FVHR GRTGRAGK+GTAI + T + +R ++
Sbjct: 536 TDVAARGLDVDNVDLVVHYELPNETESFVHRCGRTGRAGKKGTAIALHTDREFYRLRDIK 595
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTP----------------- 223
R G ++PP +V+ +SA ++ V + +EFF P
Sbjct: 596 RFTGADIREINPPSSSEVMAASAATAEHRIHAVDEDVLEFFLPAAKDMIRNVQQKTTNDD 655
Query: 224 ------------TAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRD 271
T+Q IE + + LA ALA LSG + P +SL+ G VT+ + D
Sbjct: 656 EETETETEDETLTSQEEIERRAQELLARALAALSGHTEAPPPKSLLTGSPGQVTM-IVED 714
Query: 272 SAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDR-VQGAVFDLPEEIAKELLNKQI 330
SAR ++ L D + +GKI A + GA FD+ E A+ELL+
Sbjct: 715 VNGDLPAFSARDLLATLGDKDRRLSSGVGKITFFARNSGKNGAAFDVSYEFAQELLDMGT 774
Query: 331 PPGNTISKITKLPALQDD 348
G ++K T LP L D
Sbjct: 775 IAGFEVTKATVLPELARD 792
>gi|357494025|ref|XP_003617301.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355518636|gb|AET00260.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 802
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 129/187 (68%), Positives = 154/187 (82%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMP+W+K+L+R YL NPL IDLVG+ D+KLA+GI LY+I + A K I+ LI
Sbjct: 261 LMFSATMPTWIKQLTRNYLKNPLTIDLVGDSDQKLADGISLYSILSDAYVKAGIIVPLIK 320
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+AKGGK IVFTQTKRDAD +S ++ I EALHGDISQ QRERTL GFR G F VLVA
Sbjct: 321 EHAKGGKCIVFTQTKRDADRISHGMSKSIPCEALHGDISQIQRERTLAGFRNGHFNVLVA 380
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDL+IHYELPN+ E FVHRSGRTGRAGK+GTAIL++T Q RT+R++E
Sbjct: 381 TDVASRGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGTAILVYTQDQSRTLRTIE 440
Query: 181 RDVGCKF 187
RDVGCKF
Sbjct: 441 RDVGCKF 447
>gi|356499321|ref|XP_003518490.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 595
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 127/187 (67%), Positives = 154/187 (82%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMPSW+K++SR YL+NPL IDLVG+ D+KLA+GI LY+I+T K IL+ LIT
Sbjct: 269 LMFSATMPSWIKQISRNYLNNPLTIDLVGDSDQKLADGISLYSIATDLYVKAGILAPLIT 328
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+AKGGK IVFTQTKRDAD +S A+ + EALHGDISQ QRE+TL GFR G F VLVA
Sbjct: 329 EHAKGGKCIVFTQTKRDADRLSYAMARSVKCEALHGDISQAQREKTLAGFRNGHFNVLVA 388
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDL+IHY+LPN+ E FVHRSGRTGRAGK+GTAIL++T Q R V+ +E
Sbjct: 389 TDVASRGLDIPNVDLVIHYDLPNNSEIFVHRSGRTGRAGKKGTAILVYTEDQSRAVKLIE 448
Query: 181 RDVGCKF 187
RDVG +F
Sbjct: 449 RDVGSRF 455
>gi|356569971|ref|XP_003553167.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 643
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 125/187 (66%), Positives = 151/187 (80%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMPSW+K ++R YL+NPL IDLVG+ D+KLA+GI LY+I + + +K IL+ LIT
Sbjct: 268 LMFSATMPSWIKNITRNYLNNPLTIDLVGDSDQKLADGISLYSIVSDSYTKAGILAPLIT 327
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+A GGK IVFTQTKRDAD +S + + EALHGDISQ QRERTL GFR F VLVA
Sbjct: 328 EHANGGKCIVFTQTKRDADRLSYVMAKSLRCEALHGDISQTQRERTLAGFRNNNFNVLVA 387
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDL+IHY+LPN E FVHRSGRTGRAGK+G+AIL FT Q R V+++E
Sbjct: 388 TDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGRAGKKGSAILFFTQDQFRAVQTIE 447
Query: 181 RDVGCKF 187
RDVGCKF
Sbjct: 448 RDVGCKF 454
>gi|356554094|ref|XP_003545384.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 610
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 126/187 (67%), Positives = 153/187 (81%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMPSW+K++SR YL+NPL IDLVG+ D+KLA+GI LY+I+T K IL+ LIT
Sbjct: 264 LMFSATMPSWIKQISRNYLNNPLTIDLVGDSDQKLADGISLYSIATDLYVKAGILAPLIT 323
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+AKGGK IVFTQTKRDAD +S + + EALHGDISQ QRE+TL GFR G F VLVA
Sbjct: 324 EHAKGGKCIVFTQTKRDADRLSYTMARSVKCEALHGDISQAQREKTLAGFRNGHFNVLVA 383
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDL+IHY+LPN+ E FVHRSGRTGRAGK+GTAIL++T Q R V+ +E
Sbjct: 384 TDVASRGLDIPNVDLVIHYDLPNNSEIFVHRSGRTGRAGKKGTAILVYTEDQSRAVKLIE 443
Query: 181 RDVGCKF 187
RDVG +F
Sbjct: 444 RDVGSRF 450
>gi|307104451|gb|EFN52705.1| hypothetical protein CHLNCDRAFT_36787, partial [Chlorella
variabilis]
Length = 689
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 160/373 (42%), Positives = 230/373 (61%), Gaps = 24/373 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGN----QDEKLAEGIKLYAISTTATSKRTILS 56
MLFSAT+P WVKKL ++YL+NP NIDLVG QD + A++ A ++R++L
Sbjct: 329 MLFSATLPRWVKKLVKQYLNNPENIDLVGEGNTGQDPD-----SITALAVPADARRSVLV 383
Query: 57 DLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFT 116
DL+TVY +GGK IVFTQTKR+ADEV+ ++ + ALHGD+SQ +RE+ L FR K
Sbjct: 384 DLLTVYGEGGKAIVFTQTKREADEVAASVGGHLPCGALHGDMSQREREKVLASFRANKLM 443
Query: 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 176
VLVATDVAARGLDIP+VD+++HYELP DPE+F+HRSGRTGRAGK GTAI MF +
Sbjct: 444 VLVATDVAARGLDIPDVDVVVHYELPQDPESFLHRSGRTGRAGKSGTAIAMFQPKEIGYF 503
Query: 177 RSLERDVGCK-FEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
+ + R+ + + ++ P V+E++A+QV+ L+GV E ++FTP A+ L+ +
Sbjct: 504 KRILRETEVQGVKLITAPSPTQVIEAAAKQVMYRLDGVDAEVRKYFTPVAKMLLSSRDPQ 563
Query: 236 -ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPT 294
AL AALA LSG P RSL+ E+G TLQ+ ++G L +
Sbjct: 564 EALEAALAALSGIQEVPEPRSLLTMEEGIQTLQMMSKPGRITRPAHVSGIVGKLLEGTAF 623
Query: 295 AADEIGKIHIIADDRVQGAVFDLPEEIAKEL------LNKQIPPGNTISKITKLPALQDD 348
A +G+I ++ ++ GA FD+P ++ +E+ L+K+ G +++ LPA +D
Sbjct: 624 NAGAVGRIRMLEEEGQCGAAFDVPMDLGREIMARVDELHKR---GVSLTVPESLPAEED- 679
Query: 349 GPSSDNYGRFSSR 361
GR+ SR
Sbjct: 680 ---LYQMGRYGSR 689
>gi|356524181|ref|XP_003530710.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 605
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 122/187 (65%), Positives = 152/187 (81%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMPSW+K ++R YL+NPL IDLVG+ D+KLA+GI LY+I + + +K IL+ LIT
Sbjct: 269 LMFSATMPSWIKNITRNYLNNPLTIDLVGDSDQKLADGISLYSIVSDSYTKAGILAPLIT 328
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+A GGK IVFTQTKRDAD +S + + EALHGDISQ QRE+TL GFR F VLVA
Sbjct: 329 EHANGGKCIVFTQTKRDADRLSYVMAKSLRCEALHGDISQTQREKTLAGFRNNNFNVLVA 388
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDL+IHY+LPN E FVHRSGRTGRAGK+G+AIL++T Q R V++++
Sbjct: 389 TDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGRAGKKGSAILVYTQGQSRAVQTIQ 448
Query: 181 RDVGCKF 187
RDVGCKF
Sbjct: 449 RDVGCKF 455
>gi|308804011|ref|XP_003079318.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
gi|116057773|emb|CAL53976.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
Length = 683
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 155/349 (44%), Positives = 216/349 (61%), Gaps = 8/349 (2%)
Query: 2 LFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
LFSATMP WVK++++K+L + +DLVG+ +K+A+ I L + + TS+ +I+ DL+T
Sbjct: 209 LFSATMPQWVKQITKKFLKAQHVVVDLVGDNKQKVADTIDLMTCAVSQTSRTSIVMDLVT 268
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAK K I FTQTKR ADE++ AL ++ E LHGDI+Q QRERTL FR +FTVL+A
Sbjct: 269 VYAKDKKCICFTQTKRAADELTAALGKRVSCEVLHGDIAQAQRERTLQRFRDNRFTVLIA 328
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDI +VDL+IHYELPND E+FVHR GRTGRAG++G AI M+T + +R ++
Sbjct: 329 TDVAARGLDISDVDLVIHYELPNDVESFVHRCGRTGRAGQQGAAIAMYTDRESYMIRRIQ 388
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG----TDA 236
++ GC F + P +V+++ A L+ V E + FF PTA++L+ E T
Sbjct: 389 KETGCDFRAIDIPSSTEVMDACAVTASNALSKVDSELLPFFAPTAKKLLPEDAGEDITQI 448
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAA 296
LAAALA +SG + P RSL+ T + DSA S + A ++ L+++ A
Sbjct: 449 LAAALAAISGQTEAPPPRSLLTGAPNSCTYMVV-DSADSEPAIRAGDLLRALTEIDRKLA 507
Query: 297 DEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPAL 345
D GKI +A+ G FD+ +L G +S TKLP L
Sbjct: 508 DGCGKIRFLANK--NGLCFDIDAAYMSDLETVTDLNGFDLSVCTKLPDL 554
>gi|449463625|ref|XP_004149532.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Cucumis
sativus]
Length = 593
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 123/196 (62%), Positives = 156/196 (79%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
M+FSATMPSW+ KLSR YL+NPL IDLVG+ D+KLA+GI L+++ + K +I+ LIT
Sbjct: 288 MMFSATMPSWILKLSRNYLNNPLTIDLVGDSDQKLADGISLFSVVSETYGKASIIGPLIT 347
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ KGGK I+FTQTKRDAD ++ A+ + EALHGDISQ QRERTL+GFR G+F VLVA
Sbjct: 348 EHGKGGKCIIFTQTKRDADRLAYAMGRNLRCEALHGDISQSQRERTLSGFRDGRFNVLVA 407
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDL+IH+ELPN+ E FVHRSGRTGRAGK+G+ IL+++ Q R +R +E
Sbjct: 408 TDVAARGLDIPNVDLVIHFELPNNTEIFVHRSGRTGRAGKKGSVILIYSQDQTRAIRMIE 467
Query: 181 RDVGCKFEFVSPPVVE 196
R+VGC+F + VE
Sbjct: 468 REVGCRFNELPRITVE 483
>gi|224139612|ref|XP_002323192.1| predicted protein [Populus trichocarpa]
gi|222867822|gb|EEF04953.1| predicted protein [Populus trichocarpa]
Length = 551
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 126/187 (67%), Positives = 151/187 (80%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
M FSATMPSW+++L RKYL +PL IDLVG+ D+KLAEGI LY+I++ +K +IL LIT
Sbjct: 223 MCFSATMPSWIRELVRKYLKDPLTIDLVGDSDKKLAEGITLYSIASDLYAKASILGPLIT 282
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+AKGGK IVFT+TKRDAD ++ A+ EALHGDISQ RERTL+GFR+G F +LVA
Sbjct: 283 EHAKGGKCIVFTETKRDADRLAYAMAKTYKCEALHGDISQSVRERTLSGFREGHFNILVA 342
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+PNVDLIIHY LP ETFVHRSGRTGRAGK+GTAIL++T + R VR +E
Sbjct: 343 TDVAARGLDVPNVDLIIHYALPRCSETFVHRSGRTGRAGKKGTAILIYTQDESRQVRIIE 402
Query: 181 RDVGCKF 187
RD GCKF
Sbjct: 403 RDTGCKF 409
>gi|449505807|ref|XP_004162573.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Cucumis
sativus]
Length = 611
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 123/196 (62%), Positives = 156/196 (79%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
M+FSATMPSW+ KLSR YL+NPL IDLVG+ D+KLA+GI L+++ + K +I+ LIT
Sbjct: 288 MMFSATMPSWILKLSRNYLNNPLTIDLVGDSDQKLADGISLFSVVSETYGKASIIGPLIT 347
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ KGGK I+FTQTKRDAD ++ A+ + EALHGDISQ QRERTL+GFR G+F VLVA
Sbjct: 348 EHGKGGKCIIFTQTKRDADRLAYAMGRNLRCEALHGDISQSQRERTLSGFRDGRFNVLVA 407
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDL+IH+ELPN+ E FVHRSGRTGRAGK+G+ IL+++ Q R +R +E
Sbjct: 408 TDVAARGLDIPNVDLVIHFELPNNTEIFVHRSGRTGRAGKKGSVILIYSQDQTRAIRMIE 467
Query: 181 RDVGCKFEFVSPPVVE 196
R+VGC+F + VE
Sbjct: 468 REVGCRFNELPRITVE 483
>gi|242086224|ref|XP_002443537.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
gi|241944230|gb|EES17375.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
Length = 618
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 122/187 (65%), Positives = 152/187 (81%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMP+W++KL++KYL++P+ +DLVG D+KLAEGI L ++S+ K +L +LI
Sbjct: 278 LMFSATMPTWIRKLTQKYLNSPVTVDLVGEDDQKLAEGISLLSVSSENRQKPAVLGELIK 337
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+AKGGK IVFTQTKRDAD +S +++ EALHGDISQ QRERTL GFR G+F +L+A
Sbjct: 338 EHAKGGKCIVFTQTKRDADRLSHSMSRSFQCEALHGDISQSQRERTLGGFRDGRFNILIA 397
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDL+IHYELPN E FVHRSGRTGRAGK+GTAI+M+ Q R VR +E
Sbjct: 398 TDVAARGLDIPNVDLVIHYELPNSSEIFVHRSGRTGRAGKKGTAIVMYNYEQSRAVRVIE 457
Query: 181 RDVGCKF 187
RDVGCKF
Sbjct: 458 RDVGCKF 464
>gi|308080376|ref|NP_001183357.1| uncharacterized protein LOC100501766 [Zea mays]
gi|223949963|gb|ACN29065.1| unknown [Zea mays]
gi|238010976|gb|ACR36523.1| unknown [Zea mays]
Length = 483
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 123/187 (65%), Positives = 151/187 (80%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMP+W++KL++KYL+NP+ +DLVG D+KLAEGI L A+S+ K +L +LI
Sbjct: 146 LMFSATMPTWIRKLTQKYLNNPVTVDLVGEDDQKLAEGISLLAVSSENREKPAVLGELIK 205
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+AKGGK IVFTQTKRDAD +S ++ EALHGDISQ QRERTL GFR G+F +L+A
Sbjct: 206 EHAKGGKCIVFTQTKRDADRLSHNMSRSFQCEALHGDISQSQRERTLAGFRDGRFNILIA 265
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDL+IH+ELPN E FVHRSGRTGRAGK+GTAI+M+ Q R VR +E
Sbjct: 266 TDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGTAIVMYNYDQSRAVRVIE 325
Query: 181 RDVGCKF 187
RDVGCKF
Sbjct: 326 RDVGCKF 332
>gi|414868924|tpg|DAA47481.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
isoform 1 [Zea mays]
gi|414868925|tpg|DAA47482.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
isoform 2 [Zea mays]
Length = 611
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 123/187 (65%), Positives = 151/187 (80%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMP+W++KL++KYL+NP+ +DLVG D+KLAEGI L A+S+ K +L +LI
Sbjct: 274 LMFSATMPTWIRKLTQKYLNNPVTVDLVGEDDQKLAEGISLLAVSSENREKPAVLGELIK 333
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+AKGGK IVFTQTKRDAD +S ++ EALHGDISQ QRERTL GFR G+F +L+A
Sbjct: 334 EHAKGGKCIVFTQTKRDADRLSHNMSRSFQCEALHGDISQSQRERTLAGFRDGRFNILIA 393
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDL+IH+ELPN E FVHRSGRTGRAGK+GTAI+M+ Q R VR +E
Sbjct: 394 TDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGTAIVMYNYDQSRAVRVIE 453
Query: 181 RDVGCKF 187
RDVGCKF
Sbjct: 454 RDVGCKF 460
>gi|143456572|sp|Q0D8N0.2|RH53_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 53
gi|218199081|gb|EEC81508.1| hypothetical protein OsI_24871 [Oryza sativa Indica Group]
gi|222636421|gb|EEE66553.1| hypothetical protein OsJ_23067 [Oryza sativa Japonica Group]
Length = 602
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 126/202 (62%), Positives = 161/202 (79%), Gaps = 2/202 (0%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMPSW++K++ KYL +P+ IDLVG++D+KL EGI LY+I++ K +IL LI
Sbjct: 264 MLFSATMPSWIRKITSKYLKDPIIIDLVGDEDQKLPEGISLYSIASEHYGKPSILGPLIK 323
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+A GGK IVFTQTKR+AD ++ A+ A +ALHGDISQ+QRERTL+GFR G+F +LVA
Sbjct: 324 EHANGGKCIVFTQTKREADRLAYAMGRSYACQALHGDISQNQRERTLSGFRDGRFNILVA 383
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDL+IHYELPN E FVHRSGRT RAGK+G+AIL++T+ Q R VR +E
Sbjct: 384 TDVAARGLDIPNVDLVIHYELPNTSELFVHRSGRTARAGKKGSAILIYTNDQARAVRIIE 443
Query: 181 RDVGCKFEFVSPPVVEDVLESS 202
+D+GCKF + P +E E+S
Sbjct: 444 QDIGCKFTEL--PKIEVADEAS 463
>gi|297830946|ref|XP_002883355.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
lyrata]
gi|297329195|gb|EFH59614.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
lyrata]
Length = 612
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 124/196 (63%), Positives = 155/196 (79%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
M+FSATMPSW++ L++KYL+NPL IDLVG+ D+KLA+GI Y+I + + +I+ L+T
Sbjct: 282 MMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITTYSILADSYGRASIIGPLVT 341
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+AKGGK IVFTQTKRDAD +S AL EALHGDISQ QRERTL GFR G F +LVA
Sbjct: 342 EHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVA 401
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+PNVDLIIHYELPN+ ETFVHR+GRTGRAGK+G+AIL+++ Q R V+ +E
Sbjct: 402 TDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIE 461
Query: 181 RDVGCKFEFVSPPVVE 196
R+VG +F + VE
Sbjct: 462 REVGSRFTELPSIAVE 477
>gi|22331253|ref|NP_188872.2| DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana]
gi|75335516|sp|Q9LUW5.1|RH53_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 53
gi|9293867|dbj|BAB01770.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|17064852|gb|AAL32580.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|20259816|gb|AAM13255.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|332643101|gb|AEE76622.1| DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana]
Length = 616
Score = 264 bits (674), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 123/196 (62%), Positives = 155/196 (79%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
M+FSATMPSW++ L++KYL+NPL +DLVG+ D+KLA+GI Y+I + + +I+ L+T
Sbjct: 285 MMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVT 344
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+AKGGK IVFTQTKRDAD +S AL EALHGDISQ QRERTL GFR G F +LVA
Sbjct: 345 EHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVA 404
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+PNVDLIIHYELPN+ ETFVHR+GRTGRAGK+G+AIL+++ Q R V+ +E
Sbjct: 405 TDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIE 464
Query: 181 RDVGCKFEFVSPPVVE 196
R+VG +F + VE
Sbjct: 465 REVGSRFTELPSIAVE 480
>gi|224089849|ref|XP_002308835.1| predicted protein [Populus trichocarpa]
gi|222854811|gb|EEE92358.1| predicted protein [Populus trichocarpa]
Length = 556
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 124/187 (66%), Positives = 150/187 (80%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
M FSATMPSW+K+L RKYL +PL IDLVG+ D KLA+GI LY+I++ +K +IL LIT
Sbjct: 248 MCFSATMPSWIKQLVRKYLKDPLTIDLVGDSDRKLADGITLYSIASDMYAKASILGPLIT 307
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+AKGGK IVFT+TKRDAD ++ A+ EALHGDISQ+ RERTL+GFR+G F +LVA
Sbjct: 308 EHAKGGKCIVFTETKRDADRLAYAMAKNHKCEALHGDISQNVRERTLSGFREGHFNILVA 367
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+PNVDLIIHY LP ETFVHRSGRTGRAGK+GTAIL++T R V+ +E
Sbjct: 368 TDVAARGLDVPNVDLIIHYALPRCSETFVHRSGRTGRAGKKGTAILIYTQDDARQVKLIE 427
Query: 181 RDVGCKF 187
RD GC+F
Sbjct: 428 RDTGCRF 434
>gi|302783853|ref|XP_002973699.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii]
gi|302787961|ref|XP_002975750.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii]
gi|300156751|gb|EFJ23379.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii]
gi|300158737|gb|EFJ25359.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii]
Length = 445
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 123/196 (62%), Positives = 154/196 (78%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
M+FSATMPSWVK L R+++ +PL +DLVG+ DEKLAEGIKLY+ + +K +L +L+
Sbjct: 189 MMFSATMPSWVKNLLRRFMQDPLVVDLVGDNDEKLAEGIKLYSCEASDYNKGPLLKELVN 248
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
Y KGGK IVF +TKRD V+ A++ + EALHGDI Q QRERTL+GFR G+F+VLVA
Sbjct: 249 SYGKGGKVIVFAKTKRDTHNVAQAMSRSVPCEALHGDIPQFQRERTLSGFRDGRFSVLVA 308
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDL+IHYE+P D ETFVHRSGRTGRAGK+G AILM T +Q R ++E
Sbjct: 309 TDVAARGLDIPNVDLVIHYEVPGDSETFVHRSGRTGRAGKKGVAILMHTYAQGRVRDTIE 368
Query: 181 RDVGCKFEFVSPPVVE 196
DVGC+FE ++ P V+
Sbjct: 369 HDVGCRFEALNVPNVD 384
>gi|357111676|ref|XP_003557638.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like
[Brachypodium distachyon]
Length = 604
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 119/187 (63%), Positives = 151/187 (80%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMPSW++KLS +YL +P+ IDLVG D+KL EGI LY+I++ K +IL LI
Sbjct: 264 MLFSATMPSWIRKLSNQYLKDPVIIDLVGESDQKLPEGISLYSIASENYGKSSILGTLIK 323
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+A GGK IVFTQTKR+AD ++ ++ A +ALHGDI+Q+QRERTL+GFR+G+F +LVA
Sbjct: 324 EHANGGKCIVFTQTKREADRLAYSMGRSYACQALHGDITQNQRERTLSGFREGRFNILVA 383
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDL++HYE+PN E FVHRSGRT RAGK+G AILM+T Q R VR +E
Sbjct: 384 TDVAARGLDIPNVDLVVHYEIPNSSELFVHRSGRTARAGKKGIAILMYTYEQSRAVRVIE 443
Query: 181 RDVGCKF 187
+D+GC+F
Sbjct: 444 QDIGCRF 450
>gi|242047398|ref|XP_002461445.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
gi|241924822|gb|EER97966.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
Length = 602
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 122/198 (61%), Positives = 157/198 (79%), Gaps = 1/198 (0%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMPSW++K+S KYL++P+ IDLVG+ D+KL EGI LY+I++ K++IL LI
Sbjct: 266 MLFSATMPSWIRKISNKYLNDPVIIDLVGDSDQKLPEGISLYSIASDNFGKQSILGPLIK 325
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+A GGK IVFTQTKRDAD ++ + +ALHGDISQ+QRERTL+GFR G+F +LVA
Sbjct: 326 EHANGGKCIVFTQTKRDADRLAYVMGRSYPCQALHGDISQNQRERTLSGFRDGRFNILVA 385
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDL++HYE+PN E FVHRSGRT RAGK+G+AIL++T Q R VR +E
Sbjct: 386 TDVAARGLDIPNVDLVVHYEIPNTSELFVHRSGRTARAGKKGSAILIYTYEQTRAVRVIE 445
Query: 181 RDVGCKF-EFVSPPVVED 197
+D+GC+F E PV ++
Sbjct: 446 QDIGCRFTELPKMPVSDE 463
>gi|326534262|dbj|BAJ89481.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 119/187 (63%), Positives = 151/187 (80%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMPSW++KL+ +YL +P+ IDLVG+ ++KL EGI LY+I + K +IL LI
Sbjct: 267 MLFSATMPSWIRKLTNQYLKDPVIIDLVGDSEQKLPEGISLYSIVSENYGKSSILGPLIK 326
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+A GGK IVFTQTKR+AD ++ A+ A +ALHGDISQ+QRERTL+GFR G+F +LVA
Sbjct: 327 EHADGGKCIVFTQTKREADRLAYAMGRSYACQALHGDISQNQRERTLSGFRDGRFNILVA 386
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDL++HYE+PN E FVHRSGRT RAGK+G AILM+T Q RTV+ +E
Sbjct: 387 TDVAARGLDIPNVDLVVHYEIPNSSELFVHRSGRTARAGKKGIAILMYTYEQSRTVKGIE 446
Query: 181 RDVGCKF 187
+D+GC+F
Sbjct: 447 QDIGCRF 453
>gi|125537372|gb|EAY83860.1| hypothetical protein OsI_39082 [Oryza sativa Indica Group]
Length = 630
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 118/187 (63%), Positives = 149/187 (79%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMP+W+++L++KYL NP+ IDLVG D+KLAEGI LY+I++ +K +L +LI
Sbjct: 278 LMFSATMPTWIRRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIK 337
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+AKGGK IVFTQTKRDAD +S + +ALHGDI+Q QRERTL GFR+G F +L+A
Sbjct: 338 EHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFREGHFNILIA 397
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDL+IH+ELPN E FVHRSGRTGRAGK+G AI+M + Q R +R +E
Sbjct: 398 TDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSRAIRMVE 457
Query: 181 RDVGCKF 187
DVGCKF
Sbjct: 458 NDVGCKF 464
>gi|122227760|sp|Q0ILZ4.1|RH9_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 9
Length = 628
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 118/187 (63%), Positives = 149/187 (79%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMP+W+++L++KYL NP+ IDLVG D+KLAEGI LY+I++ +K +L +LI
Sbjct: 278 LMFSATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIK 337
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+AKGGK IVFTQTKRDAD +S + +ALHGDI+Q QRERTL GFR+G F +L+A
Sbjct: 338 EHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFREGHFNILIA 397
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDL+IH+ELPN E FVHRSGRTGRAGK+G AI+M + Q R +R +E
Sbjct: 398 TDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSRAIRMVE 457
Query: 181 RDVGCKF 187
DVGCKF
Sbjct: 458 NDVGCKF 464
>gi|222617461|gb|EEE53593.1| hypothetical protein OsJ_36838 [Oryza sativa Japonica Group]
Length = 676
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 118/187 (63%), Positives = 149/187 (79%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMP+W+++L++KYL NP+ IDLVG D+KLAEGI LY+I++ +K +L +LI
Sbjct: 326 LMFSATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIK 385
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+AKGGK IVFTQTKRDAD +S + +ALHGDI+Q QRERTL GFR+G F +L+A
Sbjct: 386 EHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFREGHFNILIA 445
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDL+IH+ELPN E FVHRSGRTGRAGK+G AI+M + Q R +R +E
Sbjct: 446 TDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSRAIRMVE 505
Query: 181 RDVGCKF 187
DVGCKF
Sbjct: 506 NDVGCKF 512
>gi|428178088|gb|EKX46965.1| hypothetical protein GUITHDRAFT_159596 [Guillardia theta CCMP2712]
Length = 676
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 150/361 (41%), Positives = 216/361 (59%), Gaps = 17/361 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+P WV+KL+R L NP +DLVG K+AEG+ A+++ A + T+L+DLIT
Sbjct: 221 LLFSATVPDWVRKLARTSLVNPHEVDLVGESKLKVAEGVSHVAVASAARQRSTLLADLIT 280
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSII-ASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+Y K IVF TKRDAD++ L II +EALHGDI Q+ RE+ LNGFR G+ VL+
Sbjct: 281 IY-KTQHAIVFVNTKRDADDLVAELGLIIKGTEALHGDIPQNVREKILNGFRTGRIPVLI 339
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI ++DL++H+ +P D E F+HR+GRTGRAG+ GT++++F ++ + +
Sbjct: 340 ATDVAARGLDIDHIDLVVHFGVPKDLEMFIHRAGRTGRAGRTGTSLVLFDKAEAFQLTRI 399
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
E+D G KFE P ++++E+SA + L V+PE FF AQ L + G +LA
Sbjct: 400 EKDAGIKFEKRGVPQPDEIMEASAIRAADNLKTVNPELEGFFLGKAQELYAQDGIASLAK 459
Query: 240 ALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAA--- 296
ALA +SG+ PPS RSL+ E T+ L+ + ++G + R VM +S+V +
Sbjct: 460 ALAWMSGYKAPPSKRSLLTGEDELRTVLLSPAAQDAQGGLQVRDVMRIVSNVLSQSTLSP 519
Query: 297 --DEIGKIHIIADDRVQGAVFDLPEEIAKELL-------NKQIPPGNTISKITKLPALQD 347
IGKI D AV D+ A+ L + + T +LP L+D
Sbjct: 520 FDTRIGKIVRCQDG---SAVIDVSPMAAQHLTTVVKGYESSRFYSEGTFILPNELPELED 576
Query: 348 D 348
D
Sbjct: 577 D 577
>gi|297830944|ref|XP_002883354.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
lyrata]
gi|297329194|gb|EFH59613.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
lyrata]
Length = 615
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 118/196 (60%), Positives = 152/196 (77%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
M+FSATMPSW++ L++KYL+NPL IDLVG+ D+KLA+GI +Y+I+ + + +I+ L+
Sbjct: 301 MMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVN 360
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ KGGK IVFTQTKRDAD ++ L EALHGDISQ QRERTL GFR G F +LVA
Sbjct: 361 EHGKGGKCIVFTQTKRDADRLAFGLAKSFKCEALHGDISQAQRERTLAGFRDGNFNILVA 420
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+PNVDL+IHYELPN+ ETFVHR+GRTGRAGK+G+AIL+ Q R V+ +E
Sbjct: 421 TDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQEQSRAVKMIE 480
Query: 181 RDVGCKFEFVSPPVVE 196
++VG +F + VE
Sbjct: 481 KEVGSRFNELPSIAVE 496
>gi|15228722|ref|NP_188870.1| DEAD-box ATP-dependent RNA helicase 9 [Arabidopsis thaliana]
gi|75335517|sp|Q9LUW6.1|RH9_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 9
gi|9293865|dbj|BAB01768.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|20268676|gb|AAM14042.1| putative RNA helicase [Arabidopsis thaliana]
gi|332643099|gb|AEE76620.1| DEAD-box ATP-dependent RNA helicase 9 [Arabidopsis thaliana]
Length = 610
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 118/196 (60%), Positives = 153/196 (78%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
M+FSATMPSW++ L++KYL+NPL IDLVG+ D+KLA+GI +Y+I+ + + +I+ L+
Sbjct: 297 MMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVK 356
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ KGGK IVFTQTKRDAD ++ L EALHGDISQ QRERTL GFR G F++LVA
Sbjct: 357 EHGKGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGDISQAQRERTLAGFRDGNFSILVA 416
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+PNVDL+IHYELPN+ ETFVHR+GRTGRAGK+G+AIL+ Q R V+ +E
Sbjct: 417 TDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIE 476
Query: 181 RDVGCKFEFVSPPVVE 196
++VG +F + VE
Sbjct: 477 KEVGSRFNELPSIAVE 492
>gi|414877991|tpg|DAA55122.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 472
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 118/187 (63%), Positives = 150/187 (80%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMP+W++KL++K+L++P+ +DLVG D+KLAEGI L ++S+ K +L LI
Sbjct: 146 LMFSATMPTWIRKLTQKFLNSPVTVDLVGEDDQKLAEGISLLSVSSENREKPAVLGKLIK 205
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+AKGGK IVFTQTKRDAD +S ++ EALHGDISQ +RERTL GFR G+F +L+A
Sbjct: 206 EHAKGGKCIVFTQTKRDADRLSHNMSRSFQCEALHGDISQSERERTLAGFRDGRFNILIA 265
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDL+IH+ELPN E FVHRSGRTGRAGK+GTAI+M+ Q R VR +E
Sbjct: 266 TDVASRGLDIPNVDLVIHFELPNSSEIFVHRSGRTGRAGKKGTAIVMYNYEQSRAVRVIE 325
Query: 181 RDVGCKF 187
RDVGCKF
Sbjct: 326 RDVGCKF 332
>gi|3775995|emb|CAA09200.1| RNA helicase [Arabidopsis thaliana]
Length = 363
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 118/196 (60%), Positives = 153/196 (78%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
M+FSATMPSW++ L++KYL+NPL IDLVG+ D+KLA+GI +Y+I+ + + +I+ L+
Sbjct: 50 MMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVK 109
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ KGGK IVFTQTKRDAD ++ L EALHGDISQ QRERTL GFR G F++LVA
Sbjct: 110 EHGKGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGDISQAQRERTLAGFRDGNFSILVA 169
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+PNVDL+IHYELPN+ ETFVHR+GRTGRAGK+G+AIL+ Q R V+ +E
Sbjct: 170 TDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIE 229
Query: 181 RDVGCKFEFVSPPVVE 196
++VG +F + VE
Sbjct: 230 KEVGSRFNELPSIAVE 245
>gi|326527477|dbj|BAK08013.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 614
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 118/188 (62%), Positives = 150/188 (79%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMP W++KL +KYL +P+ +DLVG D+KLAEGI L +I+T +K +L+ LI
Sbjct: 285 LMFSATMPPWIRKLMQKYLKDPVIVDLVGEDDQKLAEGISLLSIATENHAKPAVLAQLIQ 344
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+AKGGK IVFTQTKRDAD +S + + +ALHGDI+Q QRERTL GFR+G+F+ L+A
Sbjct: 345 DHAKGGKCIVFTQTKRDADRLSYTMGRTVQCQALHGDITQGQRERTLQGFREGRFSTLIA 404
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDL+IHYELPN+ E FVHRSGRTGRAGK+G AI+M+ +Q R VR +E
Sbjct: 405 TDVAARGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGIAIVMYGYNQSRAVRGIE 464
Query: 181 RDVGCKFE 188
DVG KF+
Sbjct: 465 NDVGGKFQ 472
>gi|357156628|ref|XP_003577522.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Brachypodium
distachyon]
Length = 613
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/188 (63%), Positives = 149/188 (79%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMP+W++KL++KYL NP +DLVG D+KLAEGI L +I+T +K +L+ LI
Sbjct: 279 LMFSATMPTWIRKLTQKYLKNPATVDLVGEDDQKLAEGISLLSIATENHAKPAVLAQLIQ 338
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ KGGK IVFTQTKRDAD ++ + I + LHGDISQ QRERTL GFR G+F+ L+A
Sbjct: 339 DHGKGGKCIVFTQTKRDADRLAFTMGRSIQCQPLHGDISQVQRERTLAGFRDGRFSTLIA 398
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDL+IHYELPN E FVHRSGRTGRAGK+GTAI+M + Q R+VR +E
Sbjct: 399 TDVAARGLDIPNVDLVIHYELPNSSEIFVHRSGRTGRAGKKGTAIVMHSYQQSRSVRGIE 458
Query: 181 RDVGCKFE 188
+DVG KF+
Sbjct: 459 QDVGGKFK 466
>gi|226510222|ref|NP_001147777.1| nucleolar RNA helicase 2 [Zea mays]
gi|195613718|gb|ACG28689.1| nucleolar RNA helicase 2 [Zea mays]
Length = 613
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 119/198 (60%), Positives = 154/198 (77%), Gaps = 1/198 (0%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMPSW++K+S KYL +P+ IDLVG+ D+KL EGI LY+I++ K +I+ LI
Sbjct: 275 MLFSATMPSWIRKISNKYLKDPVIIDLVGDSDQKLPEGISLYSIASDNFGKPSIIGPLIK 334
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+A GK IVFTQTKR+AD ++ + +ALHGDISQ+QRERTL+GFR G+F +LVA
Sbjct: 335 EHANVGKCIVFTQTKREADRLAYVMGRSYQCQALHGDISQNQRERTLSGFRDGRFNILVA 394
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDL++HYE+PN E FVHRSGRT RAGK+G+AIL++T Q R VR +E
Sbjct: 395 TDVAARGLDIPNVDLVVHYEIPNTSELFVHRSGRTARAGKKGSAILIYTYEQTRAVRVIE 454
Query: 181 RDVGCKF-EFVSPPVVED 197
+D+GC+F E PV ++
Sbjct: 455 QDIGCRFTELPKMPVSDE 472
>gi|429220700|ref|YP_007182344.1| DNA/RNA helicase [Deinococcus peraridilitoris DSM 19664]
gi|429131563|gb|AFZ68578.1| DNA/RNA helicase, superfamily II [Deinococcus peraridilitoris DSM
19664]
Length = 570
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 158/392 (40%), Positives = 227/392 (57%), Gaps = 20/392 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSAT+PS V++L+R+Y +P+ +DLVG + + ++ + AI R +L+DL+T
Sbjct: 178 MLFSATLPSGVERLARQYQRDPVLVDLVGERASQASQTVTHLAIKVGRVRTR-VLADLLT 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
VY + IVFT+TKR+ADE+SL L I +EALHGD++Q QRER L FR G+ VLV
Sbjct: 237 VY-NPERAIVFTRTKREADELSLELIHRGIEAEALHGDLAQSQRERALGAFRAGRVRVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDIP VDL++ Y +PND E +VHRSGRTGRAG+EGTAI+++ + R + +L
Sbjct: 296 ATDVAARGLDIPEVDLVVQYHMPNDTEAYVHRSGRTGRAGREGTAIVLYGDREGRELSNL 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
ER G +F + P ++V E+SA + + + F A++L E G DALA
Sbjct: 356 ERATGVRFTPRAVPTAKEVREASARTAADAVRHIENDLGASFKEEAEKLFAELGVDALAR 415
Query: 240 ALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEI 299
ALA+++G + P +S SL++ E+ T+ L + MS + ++ + +
Sbjct: 416 ALAKIAGVTAPATSASLLSGEENMTTVILHAER------MSVARAVALIARGLDIESRSL 469
Query: 300 GKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKIT-KLPALQDDGPSSDNYGRF 358
GK+ + GAV D+P LL K G ++ +LP L D GR+
Sbjct: 470 GKVRLWRG----GAVADIPAANIPTLLEKSPLEGEVRVEVADELPELFDMPERESRGGRY 525
Query: 359 SSRD-----RFSRGGGSRFSRGG-ARGGARGG 384
RD SRG G SR G +RGG+R G
Sbjct: 526 GDRDGRGARSDSRGRGGYASRDGESRGGSRDG 557
>gi|320335085|ref|YP_004171796.1| DEAD/DEAH box helicase [Deinococcus maricopensis DSM 21211]
gi|319756374|gb|ADV68131.1| DEAD/DEAH box helicase domain protein [Deinococcus maricopensis DSM
21211]
Length = 604
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 147/347 (42%), Positives = 206/347 (59%), Gaps = 14/347 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSAT+P+ V ++ KYL +PL +DLVG + A+ ++ + T R +L+D +T
Sbjct: 178 MLFSATLPAGVTRIGNKYLKDPLVVDLVGESRMQAAQTVQHLKVKVGRTRTR-VLADFLT 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+Y + IVFT+TKR+ DE+++ L + +EALHGD++Q QRER L FR G+ VLV
Sbjct: 237 IY-NPERAIVFTRTKREVDELAMELIHRGLEAEALHGDLAQSQRERALGSFRAGRVRVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDIP +DL++ Y LP DPE++VHRSGRTGRAG+ GTAI+M+ + R +R+L
Sbjct: 296 ATDVAARGLDIPEIDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIVMYGEREGRELRNL 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
E G KFE S P ++V E+SA + V E + F A+RL E G DALA
Sbjct: 356 EYQTGVKFEERSIPTPKEVREASARAAADNVKKVDAEMAQPFMAEAERLFSELGLDALAR 415
Query: 240 ALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEI 299
ALA++SG ++P + SL++ E+G T+ L + MS + ++ +
Sbjct: 416 ALAKISGVTQPAVNASLLSGEEGMTTIILNAER------MSVARAVALIARSTDIDTRRL 469
Query: 300 GKIHIIADDRVQGAVFDLPEEIAKELLNKQ-IPPGNTISKITKLPAL 345
GKI + GAV DLP E LL K I TI +LP L
Sbjct: 470 GKIRLWRG----GAVADLPNEAVAPLLAKNPIDDEVTIEVAQELPEL 512
>gi|224124518|ref|XP_002330043.1| predicted protein [Populus trichocarpa]
gi|222871468|gb|EEF08599.1| predicted protein [Populus trichocarpa]
Length = 402
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 147/221 (66%), Positives = 161/221 (72%), Gaps = 15/221 (6%)
Query: 227 RLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMG 286
+LIEE+GT+ALAAALA LSGFS+PPSSRSLI+H QGW TLQLTRD +SRGF+SARSV G
Sbjct: 124 KLIEEQGTNALAAALAHLSGFSQPPSSRSLISHAQGWATLQLTRDPTYSRGFLSARSVTG 183
Query: 287 FLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQ 346
FLSDVYP AADE+GKIH+IAD+RVQGAVFDLPEEIAKELLNKQIPPGNTI+KITKLPALQ
Sbjct: 184 FLSDVYPAAADEVGKIHVIADERVQGAVFDLPEEIAKELLNKQIPPGNTIAKITKLPALQ 243
Query: 347 DDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDEDGF 406
DDGP D YGRFSSRDR G R G D +DG
Sbjct: 244 DDGPPGDFYGRFSSRDR--------------PARGGPRGQRGGFRSSRGRGSGRDSDDGG 289
Query: 407 SSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRD 447
+ RGGRS S N S+ S SS DDWLIGG RSSR SRD
Sbjct: 290 TYRRGGRS-NSNENSWSQMSRSSGDDWLIGGRRSSRPPSRD 329
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 100/118 (84%), Positives = 108/118 (91%)
Query: 18 YLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRD 77
Y LN VG+Q+EKLAEGIKLYA+S TA SKRTILSDL+TVYAKGGKTI+FTQTKRD
Sbjct: 6 YTQIKLNPSHVGDQEEKLAEGIKLYALSATAASKRTILSDLVTVYAKGGKTIIFTQTKRD 65
Query: 78 ADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 135
ADEVS+ALT+ IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDL
Sbjct: 66 ADEVSMALTNTIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDL 123
>gi|325283382|ref|YP_004255923.1| DEAD/DEAH box helicase domain protein [Deinococcus proteolyticus
MRP]
gi|324315191|gb|ADY26306.1| DEAD/DEAH box helicase domain protein [Deinococcus proteolyticus
MRP]
Length = 612
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 150/384 (39%), Positives = 216/384 (56%), Gaps = 29/384 (7%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+ +++LS KYL++PL +D+VG + A+ ++ + S+ +L+DL+T
Sbjct: 178 LLFSATLTPEIRRLSNKYLNDPLVVDMVGEGKSQAAQTVEHLKVRV-GRSRTRVLADLLT 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
VY K IVFT+TKR+ DE++L L +EALHGD++Q+QRER L FR G+ ++LV
Sbjct: 237 VY-NPEKAIVFTRTKRETDELALELIHRGFEAEALHGDLAQNQRERALGSFRSGRTSILV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDIP VDL++ Y LP DPE++VHRSGRTGRAG+ GTAI+M+ ++R + L
Sbjct: 296 ATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRAGTAIIMYGDREQRDINGL 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
ER G +F P +V E+SA L V E+ F A+ L+EE G +ALA
Sbjct: 356 ERVTGVRFTERPLPTPREVQEASAHASSEMLRRVDAEAAAGFMEQAEALLEEMGAEALAR 415
Query: 240 ALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEI 299
ALA++SG + P + SL++ E+G TL L + +S + L+ + ++
Sbjct: 416 ALAKISGVTEPQAPASLLSGEEGQTTLILHGER------LSIARAVALLARHSDVDSRKL 469
Query: 300 GKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNT-ISKITKLPALQDDGPSSDNYGRF 358
GK+ GAV D+P + L+ G + +LP L F
Sbjct: 470 GKVRQWRG----GAVADVPTQYVAALMKASPLDGEIGVEVAQELPEL------------F 513
Query: 359 SSRDRFSRGGGSRFSRGGARGGAR 382
R R GG F G RGG R
Sbjct: 514 EQPTRERRDGGRSF---GDRGGRR 534
>gi|94984710|ref|YP_604074.1| DEAD/DEAH box helicase [Deinococcus geothermalis DSM 11300]
gi|94554991|gb|ABF44905.1| ATP-dependent RNA helicase DbpA [Deinococcus geothermalis DSM
11300]
Length = 591
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 158/402 (39%), Positives = 219/402 (54%), Gaps = 20/402 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSAT+ + +L+RKYL P+ +DLVG + A+ ++ + T R +L+DL+T
Sbjct: 183 MLFSATLNDEIHRLARKYLREPVVVDLVGEGKSQAAQSVEHLKVKVGRTRTR-VLADLLT 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
VY K IVFT+TKR+ADE++ L I SEALHGD++Q QRER L FR G+ VLV
Sbjct: 242 VY-NPEKAIVFTRTKREADELANELIHRGIESEALHGDLAQSQRERALGAFRSGRVGVLV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDIP VDL++ Y LP DPE++VHRSGRTGRAG+ GTAI+M+ + R +R+L
Sbjct: 301 ATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIVMYGDRENRELRNL 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
E G +F+ P ++V +SA + V F A+RL E G +ALA
Sbjct: 361 EYRTGVQFKERPLPTPKEVQAASARASADLVRKVDSGVAATFQAEAERLFSELGLEALAR 420
Query: 240 ALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEI 299
ALA++SG + P + SL++ E+G TL L + +S + L+ +
Sbjct: 421 ALAKISGVTEPVQAASLLSGEEGLTTLILRGER------LSVPRTVALLARSGDVDTRRL 474
Query: 300 GKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITK-LPALQDDGPSSDNYGRF 358
GK+ G V D+P E ++LL G ++ + LP L + G +
Sbjct: 475 GKVRQWRG----GTVADVPSEYVEKLLAASPLEGEVHLEVAQELPELFEAPTREGRQGSY 530
Query: 359 SSRDRFSRGGGSRFSRGGARG-GARGGGSMDRRGFRSSRSWG 399
R GSR RG G G R GGS +G WG
Sbjct: 531 GPRTGSRDESGSRNFRGSRGGYGNREGGSRGSQG-----RWG 567
>gi|15807648|ref|NP_295347.1| RNA helicase [Deinococcus radiodurans R1]
Length = 560
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 198/327 (60%), Gaps = 13/327 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSAT+ + +K+LSR YL +PL +D+VG + A+ ++ + S+ +L+DL+T
Sbjct: 59 MLFSATLNNDIKRLSRNYLKDPLIVDMVGEGKSQAAQTVEHLKVKV-GRSRTRVLADLLT 117
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
VY K IVFT+TKR+ADE++ L + SEALHGD++Q QRER L FR G+ VLV
Sbjct: 118 VY-NPEKAIVFTRTKREADELANELIHRGLESEALHGDLAQTQRERALGAFRSGRVGVLV 176
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDIP VDL++ Y LP DPE++VHRSGRTGRAG+ GTAI+M+ + R V L
Sbjct: 177 ATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIIMYGDRENREVMGL 236
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
ER G +F+ P +V ++SA + V PE+ + F A++L E G +ALA
Sbjct: 237 ERITGVRFKERPLPTPSEVAQASARASSEMVRRVDPEAAQGFQAEAEQLFSELGLEALAR 296
Query: 240 ALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEI 299
ALA++SG + P + SL++ E+G TL L + +S + ++ +
Sbjct: 297 ALAKISGVTEPAKAASLLSGEEGLTTLILHGER------LSVPRTVALIARAVDVDTRRL 350
Query: 300 GKIHIIADDRVQGAVFDLPEEIAKELL 326
GK+ G V D+P E ++L+
Sbjct: 351 GKVR----QWRGGTVADVPSEFVEKLM 373
>gi|440791138|gb|ELR12392.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 723
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 146/361 (40%), Positives = 221/361 (61%), Gaps = 25/361 (6%)
Query: 1 MLFSATMPSWVKKLSRKYL--DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
+LFSAT+P WV+ +++K++ N + +DLVGN K A ++ AI + + ++D+
Sbjct: 302 LLFSATIPPWVQGIAQKHMRPSNLITVDLVGNSKLKAALTVRHLAICCPPPVRISTMADV 361
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ VYA G+TIVF TK + +E+++ + + LHGDI+Q QRE TL GFR+G+F+ L
Sbjct: 362 VKVYAGTGRTIVFANTKAEVNELAMKSSISNVCQVLHGDIAQKQREITLQGFREGRFSCL 421
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLDI +VDL+I + P D ET++HRSGRTGRAGK G + FT RR VR
Sbjct: 422 VATDVAARGLDIDDVDLVIQTQAPKDKETYIHRSGRTGRAGKSGICVTFFT---RRDVRD 478
Query: 179 -----LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG 233
LE VG KFE + P D++ + + V L VH E ++ F P+A++LI+EKG
Sbjct: 479 GNLKWLESAVGAKFELIGTPQQPDLIRVATDAVEEKLEHVHDEMIKAFLPSAEKLIQEKG 538
Query: 234 -TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG----FMSARSVMGFL 288
+ALAAALA +SG+++P RSL++ +G+ T+ L ++S RG FM + FL
Sbjct: 539 ENEALAAALAVISGYTQPLQKRSLLSSTEGYSTV-LLKNSLPIRGVGWVFMIIKK---FL 594
Query: 289 SDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQ-IPPGNTISKITKLPALQD 347
D ++ I D+ AV +LP+ +A +L+ + IP G I+ ++P L++
Sbjct: 595 GD---EIEGQVKDIEFCQDEHC--AVAELPQALAVKLVESRGIPNGLEITIPNEIPPLKE 649
Query: 348 D 348
+
Sbjct: 650 N 650
>gi|74211590|dbj|BAE26522.1| unnamed protein product [Mus musculus]
Length = 851
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 151/426 (35%), Positives = 231/426 (54%), Gaps = 46/426 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 444 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVI 503
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK+DA E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 504 RVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVL 563
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + + +
Sbjct: 564 VATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQ 623
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 624 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGDVEAL 683
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN + G+VT+ + M +S + +
Sbjct: 684 AAALAHISGATS-VDQRSLINSQAGFVTM-----------ILRCSIEMPNISYAWKELKE 731
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+ E E+ K ++ T+ P L
Sbjct: 732 QLGE---SIDAKVKGMVFLKGKLGVCFDVRTEAVTEIQEKWHDSRRWQLTVATEQPEL-- 786
Query: 348 DGPSSDNYGRFSSRD------RFSRGGGSRFSRGGARGGAR--------GGGSMDRRGFR 393
+GP GR RD R RGG F G RGG+R GG +R F
Sbjct: 787 EGPPDGYRGRMGQRDGSRGAFRGQRGGSRNFRGQGQRGGSRNFRGQRPGGGNRGQKRSF- 845
Query: 394 SSRSWG 399
S+++G
Sbjct: 846 -SKAFG 850
>gi|357159473|ref|XP_003578458.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Brachypodium
distachyon]
Length = 694
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 139/356 (39%), Positives = 207/356 (58%), Gaps = 22/356 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WVKKLS ++L + +DLVGN+ K + +K A+ ++ I+ D+I
Sbjct: 307 LLFSATLPEWVKKLSMRFLKADKKTVDLVGNEKMKASSSVKHLALPCNRAARSQIIPDII 366
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y++GG+TI+FT+TK A E+S I S ALHGDI+Q QRE + GFR GKF VLV
Sbjct: 367 KCYSRGGRTIIFTETKESASELS---GLIPGSRALHGDIAQAQREVVIAGFRSGKFLVLV 423
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
AT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A+++F + +V +
Sbjct: 424 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRYKYSVTRI 483
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLI---EEKGTDA 236
ER+ G KFE +S P DV +S+ + + V + F A+ L+ D
Sbjct: 484 ERESGVKFEHISAPQPTDVAQSAGNEAADAIASVSDSVIPVFRQQAEELLSSSSMSAVDL 543
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQL-TRDSAFSRGFMSARSVMGFLSDVYPTA 295
LA ALA+ G++ RSL++ + + TLQL T ++ GF + ++ F+ +
Sbjct: 544 LAKALAKAVGYTD-IKKRSLLSSMENYTTLQLQTGRPMYTPGF-ALTTLKRFMPE----- 596
Query: 296 ADEIGKIH---IIADDRVQGAVFDLPE-EIAKELLNKQIPPGNTISKITKLPALQD 347
D++ +H + AD GAVFD+P E+ +L + T+ ++ +LP LQ+
Sbjct: 597 -DKLSDVHGITLTADG--TGAVFDVPSAEVQDYILGSENAAMVTLDEVKQLPPLQE 649
>gi|198285649|gb|ACH85363.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Salmo salar]
Length = 611
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 115/271 (42%), Positives = 181/271 (66%), Gaps = 4/271 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT PSWV ++++Y+ ++DL+G + +K A ++ AI+ + + ++ D++
Sbjct: 219 LLFSATCPSWVYDVAKRYMRPTYEHVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVV 278
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TIVF +TK+DA+E+S+ + +S++LHGDI Q QRE TL GFR G F VL
Sbjct: 279 QVYSGSHGRTIVFCETKKDANELSMNASIKQSSQSLHGDIPQKQREITLKGFRSGTFEVL 338
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + +R
Sbjct: 339 VATNVAARGLDIPEVDLVVQCSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEDQLRY 398
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++SS++ V L+ V P+++E+F +A +LIEE+G +AL
Sbjct: 399 VEQKAGITFKRVGVPTANDIIKSSSKDAVRFLDSVPPQAIEYFRVSATKLIEERGAVEAL 458
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
+AALA +SG + RSL+N + G+ T+ +
Sbjct: 459 SAALAHISG-ATALEQRSLLNSDTGYTTMTM 488
>gi|226356665|ref|YP_002786405.1| DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti VCD115]
gi|226318655|gb|ACO46651.1| putative DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti
VCD115]
Length = 602
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 142/368 (38%), Positives = 204/368 (55%), Gaps = 14/368 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSAT+ + + +LSR YL P+ +D+VG + A+ ++ + S+ +L+DL+T
Sbjct: 178 MLFSATLNNDINRLSRNYLREPVIVDMVGEGKSQAAQTVEHLKVRV-GRSRTRVLADLLT 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+Y K IVFT+TKR+ADE++ L + +EALHGD++Q QRER L FR G+ VLV
Sbjct: 237 IY-NPEKAIVFTRTKREADELANELIHRGLEAEALHGDLAQSQRERALGAFRSGRVGVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDIP VDL++ Y LP DPE++VHRSGRTGRAG+ GTAI+M+ + R V L
Sbjct: 296 ATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIIMYGDRENREVMGL 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
ER G +F P ++V +SA+ + V F A+RL E G +AL
Sbjct: 356 ERITGVRFIERPLPTPKEVQAASAKTSADMVRKVDSGVAATFQAEAERLFSELGLEALTR 415
Query: 240 ALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEI 299
ALA++SG + P + SL++ E+G TL L + MS + L+ +
Sbjct: 416 ALAKISGVTEPTKAASLLSGEEGLTTLILHGER------MSIARTVALLARAGDVDTRRL 469
Query: 300 GKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNT-ISKITKLPALQDDGPSSDNYGRF 358
GK+ G V D+P E ++LL G I +LP L + G +
Sbjct: 470 GKVRQWRG----GTVADVPSEYLQKLLAANPLEGEVQIEVAQELPELFEQAVRERREGGY 525
Query: 359 SSRDRFSR 366
+R +R
Sbjct: 526 QGGNRGTR 533
>gi|355782883|gb|EHH64804.1| hypothetical protein EGM_18115 [Macaca fascicularis]
Length = 783
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 155/434 (35%), Positives = 234/434 (53%), Gaps = 46/434 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 372 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 431
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 432 RVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVL 491
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 492 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQ 551
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 552 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 611
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AA LA +SG + RSLIN G+VT+ + M +S + +
Sbjct: 612 AATLAHISG-AMSVDQRSLINSNVGFVTM-----------ILQCSIEMPNISYAWKELKE 659
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+P E+ K +S T+ P L
Sbjct: 660 QLGE---EIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEKWHDSRRWQLSVATEQPEL-- 714
Query: 348 DGPSSDNYGRFSSRDRFSRG------GGSRF--SRGGARG--GARGGGSMDRRGFRSSRS 397
+GP + YG F + SRG G RF R G+RG G R GG G +S+RS
Sbjct: 715 EGP-REGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRGQRSGG-----GNKSNRS 768
Query: 398 WGSDDEDGFSSSRG 411
+ FS + G
Sbjct: 769 QNKGQKRSFSKAFG 782
>gi|386857046|ref|YP_006261223.1| DEAD/DEAH box helicase [Deinococcus gobiensis I-0]
gi|380000575|gb|AFD25765.1| DEAD/DEAH box helicase-like protein [Deinococcus gobiensis I-0]
Length = 599
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 207/368 (56%), Gaps = 14/368 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSAT+ + +LSRKYL +PL +D+VG + A+ ++ + S+ +L+DL+T
Sbjct: 178 MLFSATLNGDINRLSRKYLRDPLTVDMVGEGKSQAAQTVEHLKVRV-GRSRTRVLADLLT 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
VY K IVFT+TKR+ADE++ L I SEALHGD++Q QRER L FR G+ VLV
Sbjct: 237 VY-NPEKAIVFTRTKREADELANELIHRGIESEALHGDLAQTQRERALGAFRSGRVGVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDIP VDL++ Y LP DPE++VHRSGRTGRAG+ GTAI+M+ R + L
Sbjct: 296 ATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIIMYGDRDGREMSGL 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
ER G +F P ++V +SA + V + + F A+RL E G +AL
Sbjct: 356 ERITGVRFTERPLPTPKEVASASARSSADLVRRVDSGAAQGFQEEAERLFSELGLEALTR 415
Query: 240 ALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEI 299
ALA++SG + P + SL++ E+G TL L + +S + L+ +
Sbjct: 416 ALAKISGVTEPAKAASLLSGEEGLTTLILHGER------LSVPRTVAVLARGSDVDTRRL 469
Query: 300 GKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITK-LPALQDDGPSSDNYGRF 358
GK+ G V D+P E ++LL G+ ++ + LP L + G +
Sbjct: 470 GKVRQWRG----GTVADVPSEYVEKLLAANPLEGDIQVEVAQELPELFEAPTRERREGSY 525
Query: 359 SSRDRFSR 366
S +R R
Sbjct: 526 SGGNRGYR 533
>gi|299115354|emb|CBN74178.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 923
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 128/334 (38%), Positives = 196/334 (58%), Gaps = 13/334 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+PSWV+ ++ KY NPL +D VG KLA +K +I ++ + ++L D+IT
Sbjct: 445 LLFSATVPSWVRNIANKYTANPLTVDAVGKHVNKLATTVKHLSIEVSSRHRSSMLEDIIT 504
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y KG IVFT +K + DE++ T + S+ LHGDISQHQR++T+ FR F VLV
Sbjct: 505 YYGKGSHAIVFTNSKAECDELADGQTFKTLTSQVLHGDISQHQRDQTIKAFRAKGFQVLV 564
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ ++DL++ Y P DP+++VHRSGRTGRAG+ G A+ ++ ++ R +R +
Sbjct: 565 ATDVAARGIDVSDIDLVVQYRPPRDPDSYVHRSGRTGRAGRPGVAVTLYAENEIRDIRKI 624
Query: 180 ERDVGCKFEFV--SPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDAL 237
E+ VG F F + P E V+ + + GV + V+FF +AQ L+ E+ ++
Sbjct: 625 EQGVGQGFRFERGAVPSAEQVMSLAGTVAREQIKGVSDDMVDFFRESAQELLAEEESEDK 684
Query: 238 AAALAQ-LSGFSRPP--SSRSLINHEQGWVTLQLTRDSAFSRG-FMSARSVMGFLSDVYP 293
LA+ L+ +R + RS++ E VT+Q+ + G M A +G + P
Sbjct: 685 ELLLAKCLAAIARKTHVTRRSMLTGEPDKVTVQMVAPRQLTSGDVMFAVGKLGRAAGFEP 744
Query: 294 TAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 327
+G+I I D AVFD+ E A +L+
Sbjct: 745 M----VGRIAIAKDPTT--AVFDMSTEAADQLVK 772
>gi|118092587|ref|XP_001232052.1| PREDICTED: nucleolar RNA helicase 2 [Gallus gallus]
Length = 713
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 117/271 (43%), Positives = 176/271 (64%), Gaps = 4/271 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P+WV +++KY+ + +DL+G + +K A ++ AI + + ++ D+I
Sbjct: 319 LLFSATCPNWVYDVAKKYMKSKYEQVDLIGRKTQKAATTVEHLAIECHWSQRAAVIGDVI 378
Query: 60 TVYAKG-GKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TIVF +TK+DA+E++L + ++LHGDI Q QRE TL GFR G F VL
Sbjct: 379 QVYSGSYGRTIVFCETKKDANELALNASIKQDCQSLHGDIPQKQREITLKGFRNGAFKVL 438
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + +R
Sbjct: 439 VATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQRKEENQLRY 498
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E G F+ V P D++++S++ + L+ V ++E+F +AQ LIEEKG +AL
Sbjct: 499 VEVKAGITFKRVGVPTATDIIKASSKDAIRCLDSVPQTAIEYFKESAQLLIEEKGPVNAL 558
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
AAALA +SG + RSL+N + G+VT+ L
Sbjct: 559 AAALAHISGAT-SIEQRSLLNSDVGFVTMVL 588
>gi|168023701|ref|XP_001764376.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684528|gb|EDQ70930.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 689
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 135/350 (38%), Positives = 203/350 (58%), Gaps = 11/350 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNP-LNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P+WV++++RK+L +DLVG++ K + ++ + + + ++ D+I
Sbjct: 297 LLFSATLPTWVQQIARKFLKATRKTVDLVGDEKMKASNSVRHLLLPGHYSMRTQLVQDVI 356
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ Y GG+ IVFT+TK DA E++ AL S A ALHGDI Q+QRE TL GFR GKF+VLV
Sbjct: 357 SCYGSGGRIIVFTETKNDASELAGALKSGTA-RALHGDIPQNQREVTLQGFRTGKFSVLV 415
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI +V L+I E P D ET++HRSGRTGRAG G ++L F + V +
Sbjct: 416 ATDVAARGLDINDVQLVIQCEPPRDAETYIHRSGRTGRAGNTGVSVLFFDRKKEYMVPQI 475
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG---TDA 236
ER G KFE ++ P D+ ++S ++ V V F A+ L+E G D
Sbjct: 476 ERKAGFKFERIAAPQPLDIAKASGNTATDSVLAVSDTVVPLFRQAAKDLVESSGLPILDI 535
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAA 296
LA A+A++SG + RSL+ TL L +++ + + FL + T
Sbjct: 536 LAKAIAKISGQTE-LKRRSLLTSHDDSTTLILKANTSMYSPTYAFNCLRKFLPE---TII 591
Query: 297 DEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQ 346
+E+ ++++ D + GAVFD+P + E + +Q T+ + LP LQ
Sbjct: 592 NEVRRMNLTVDGK--GAVFDVPSKNVDEFIAEQEGENFTVEVLDALPELQ 639
>gi|326923424|ref|XP_003207936.1| PREDICTED: hypothetical protein LOC100542017, partial [Meleagris
gallopavo]
Length = 1461
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 116/271 (42%), Positives = 177/271 (65%), Gaps = 4/271 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P+WV +++KY+ + +DL+G + +K A ++ AI + + ++ D+I
Sbjct: 1056 LLFSATCPNWVYDVAKKYMKSKYEQVDLIGRRTQKAATTVEHLAIECHWSQRAAVIGDVI 1115
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TIVF +TK+DA+E++L + ++LHGDI Q QRE TL GFR G F VL
Sbjct: 1116 QVYSGSHGRTIVFCETKKDANELALNASIKQDCQSLHGDIPQKQREITLKGFRNGAFKVL 1175
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + +R
Sbjct: 1176 VATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQRKEENQLRY 1235
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D++++S++ + L+ V ++++F +AQ LIEEKG +AL
Sbjct: 1236 VEQKAGITFKRVGVPTATDIIKASSKDAIRCLDSVPQSAIDYFKESAQLLIEEKGPVNAL 1295
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
AAALA +SG + RSL+N + G+VT+ L
Sbjct: 1296 AAALAHISGAT-SIEQRSLLNSDVGFVTMIL 1325
>gi|167386672|ref|XP_001737862.1| ATP-dependent RNA helicase DDX50 [Entamoeba dispar SAW760]
gi|165899191|gb|EDR25838.1| ATP-dependent RNA helicase DDX50, putative [Entamoeba dispar
SAW760]
Length = 689
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 152/405 (37%), Positives = 217/405 (53%), Gaps = 21/405 (5%)
Query: 1 MLFSATMPSWVKKLSRKYL-DNPLNIDL-VGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
+LFSATMP+WVK++S KYL D+ ID+ VGN ++ + K A SK ++DL
Sbjct: 253 LLFSATMPAWVKEISEKYLRDDAEVIDVTVGNT--QVPKNAKHLACRIFYQSKTQTIADL 310
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
I VY + G+TIVF TK + + ++A+ I + LHGDI Q QRE+TLNGFR+ KF VL
Sbjct: 311 IRVYGRTGRTIVFCDTKAECTDCAIAINPIFECQQLHGDIQQKQREQTLNGFRENKFNVL 370
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLDI VDLII +P D +VHR+GRT RAGKEGT I +FT + ++
Sbjct: 371 VATDVAARGLDISGVDLIIMTHVPKDIPQYVHRAGRTARAGKEGTTITLFTRKELPQLQL 430
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD-AL 237
+E + F+ + P + E + + + V + E F +++L+E + L
Sbjct: 431 IENRIKIHFQRIGTPQKAQIAEVTCGNLPEEIKEVPDATAELFRDISKKLLETGDAETVL 490
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
+A LS S S RSL+ E G TL + GF + ++G D P+ D
Sbjct: 491 CKVIASLSTVSNDDSDRSLLQGEPGVKTL-FMETKGTTTGFSGTKFLLGKTLD--PSEID 547
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGR 357
++G++++ D V FDLP +IA +LL + I IT +PA D+ G
Sbjct: 548 KLGEVYVYKDHFV---FFDLPTKIANKLLKSKSKWSKAIVNIT-VPAY-----FPDDVGI 598
Query: 358 FSSRDRFSRGGGSRFSRGGAR--GGARGGGSMDRRGFRSSRSWGS 400
+S+D G R G R GG R G DRR + +G+
Sbjct: 599 GNSKDPNEERG--RKDSGSLRKDGGDRKGYGNDRRDGGDRKKYGN 641
>gi|149511215|ref|XP_001519332.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Ornithorhynchus
anatinus]
Length = 790
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 152/429 (35%), Positives = 231/429 (53%), Gaps = 25/429 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ +DL+G +K A ++ AI + ++ D+I
Sbjct: 368 LLFSATCPQWVYKVAKKYMKAKYEQVDLIGKLTQKAATTVEHLAIQCRENQRAAVIGDVI 427
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ IVF +TK+DA E++L ++ALHGDI+Q QRE TL GFR G F VL
Sbjct: 428 QVYSGNQGRAIVFCETKKDATEMALNSNIKQEAQALHGDIAQSQREITLKGFRNGVFKVL 487
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I F +R +R
Sbjct: 488 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFFQPRERCQLRY 547
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALA 238
+E+ G F+ V+ P + D++++S++ +++L V E++E F A+ LIEEKG
Sbjct: 548 VEQKSGITFKHVNIPSLVDIIQASSKDAISSLASVPLEALEKFRTYAKTLIEEKGAVEAL 607
Query: 239 AALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE 298
AA + RSLI+ ++G+VT+ L + + L+ A +
Sbjct: 608 AAALAHIAGASSFQQRSLISSDKGFVTVALKCSEELKHTSAAQTELRAKLT---ADLAAQ 664
Query: 299 IGKIHIIADDRVQGAVFDLP----EEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDN 354
+ ++ ++ R G FD+P ++I E + + +S +LP L+ D D+
Sbjct: 665 VTRMCLLKGKR--GVCFDVPSAQVDQIKAEWKDSE---KWKLSLPQQLPELERD---YDD 716
Query: 355 YGRFSS-RDRFSRG---GGSRFSRGGARGGARGG----GSMDRRGFRSSRSWGSDDEDGF 406
GRFS+ R R G G R +R G R G R G G +R GF + +GF
Sbjct: 717 GGRFSNFRQRVQHGNRLGAFRGNRQGNRQGNRMGNHPRGGFNRGGFNRGGFNRGGNRNGF 776
Query: 407 SSSRGGRSF 415
+ R+F
Sbjct: 777 QNGGQKRNF 785
>gi|307109393|gb|EFN57631.1| hypothetical protein CHLNCDRAFT_20835, partial [Chlorella
variabilis]
Length = 608
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 132/335 (39%), Positives = 192/335 (57%), Gaps = 16/335 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WVK +++++L +DLVG+Q K + ++ + + + I+ DL+
Sbjct: 191 LLFSATLPHWVKDITKRFLKPGFTTVDLVGSQKMKASTSVRHLLLPCHWSQRSQIVPDLV 250
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y G+TI+FT+TK DA+E+S L + ALHGDI Q QRE TL GFR GKF+VLV
Sbjct: 251 KCYGVCGRTIIFTETKNDANELSGTLAESFGARALHGDIPQGQREVTLAGFRSGKFSVLV 310
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V+L+I E P DPET++HRSGRTGRAG+ G + + + + +
Sbjct: 311 ATDVAARGLDISGVELVIQLEPPKDPETYIHRSGRTGRAGQTGICLTLVDRRKEGLIPYI 370
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGT--DAL 237
+ G KFE V P D+ + + E+ + + V + FF AQ+L+E G+ DA+
Sbjct: 371 QTKAGLKFERVGAPQPSDMAQLAGERALEAVQAVDVSVLPFFRAAAQKLLESVGSPEDAV 430
Query: 238 AAALAQLSGF--SRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVY--P 293
A ALA+++G RP RSL+ + + TL+ + V GFL
Sbjct: 431 ALALAKITGHVEMRP---RSLLTAHEDFTTLRFVSPWPVEK----PGQVFGFLRKHMHEE 483
Query: 294 TAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNK 328
+E ++ + AD GAVFD+P +AKE L K
Sbjct: 484 ETVEEAKRMTLTADGL--GAVFDVPTSLAKEFLAK 516
>gi|302848249|ref|XP_002955657.1| hypothetical protein VOLCADRAFT_66087 [Volvox carteri f.
nagariensis]
gi|300259066|gb|EFJ43297.1| hypothetical protein VOLCADRAFT_66087 [Volvox carteri f.
nagariensis]
Length = 727
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 129/335 (38%), Positives = 199/335 (59%), Gaps = 15/335 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLN--IDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
+LFSAT+P WVK L++++L P + +DLVG+ + A ++ + + + +L DL
Sbjct: 293 LLFSATLPKWVKGLTQRFL-RPGHRFMDLVGDDKMQAAVTVRHLMLPCSYPQRAGLLKDL 351
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
IT Y GG+TI+FT +K++A E+S+ L + ++ALHGD++Q RE+TL+GFR+G+F VL
Sbjct: 352 ITSYGAGGRTIIFTDSKKEAAELSVVLGDSLGAQALHGDLAQSMREQTLDGFRKGRFPVL 411
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
+ATDVAARGLD+ ++L++ + P D ET++HRSGRTGRAG GT I + T V
Sbjct: 412 IATDVAARGLDVSGIELVLMVDPPADWETYIHRSGRTGRAGSSGTCITLVTKKMEYMVAI 471
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD--- 235
+E G KFE + P D+ +AE+ +A L+ V P VE F A R +EE+ D
Sbjct: 472 IEGRAGMKFERIGAPQPADMARIAAERSLALLSEVDPAVVEHFRDAANRHLEEQAADGRD 531
Query: 236 ---ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVY 292
ALA ALA+++G+ + +RSL+ TL T + S + F
Sbjct: 532 PAEALARALAKITGY-KEMKARSLLTAHDDCTTLLFTCEDHTIESPSSVSVCLCFSVVCN 590
Query: 293 PTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 327
P ++ ++ + AD + GAVFD+P E+A+ L+
Sbjct: 591 P---QQVKRMTVTADSK--GAVFDVPSELAQTFLD 620
>gi|291236621|ref|XP_002738237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 21-like
[Saccoglossus kowalevskii]
Length = 700
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 135/357 (37%), Positives = 216/357 (60%), Gaps = 26/357 (7%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WV + ++KY+ + + +DL+G Q K A ++ AI + +SD++
Sbjct: 303 LLFSATLPEWVYRTAKKYMKSEIKRVDLIGQQKLKTATTVEHLAIRCHYRQRAATISDVV 362
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ K G+ ++FT+TK+DA+E+ L+ + + LHGDI+Q+QRE TL GFR GKF L
Sbjct: 363 QVYSGKHGRCMIFTETKKDANEMGLSSSIRQDVQVLHGDIAQNQREITLKGFRDGKFRCL 422
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLDIP VDLI+ E P D E ++HRSGRTGRAG+ G ++ + ++ ++
Sbjct: 423 VATDVAARGLDIPEVDLIVMCEPPKDAENYIHRSGRTGRAGRTGVSVCFYKPNEEHVLKL 482
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+ER G KF V P ED++++SA+ + +L+ V +++ F A++LIEEKG +AL
Sbjct: 483 IERRAGIKFRRVGAPQPEDIIKTSADDALKSLDAVPESAIKLFHEAAEKLIEEKGPVEAL 542
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + +SRSL+N ++G+ T S ++ M LS V+ +
Sbjct: 543 AAALALVSG-ATDVTSRSLLNSDEGYTTY-----------IFSCQTEMRALSYVWRALGN 590
Query: 298 EIGK--------IHIIADDRVQGAVFDLPEEIAKELLNKQIPP-GNTISKITKLPAL 345
+I + + + + + AVFD+P ++ +L + + G T+ + LP +
Sbjct: 591 QIPEDVKEKFRGMRMCTN--TKSAVFDVPNDVIPKLESHWVNRWGCTLEQAQHLPDI 645
>gi|403335713|gb|EJY67037.1| DEAD/DEAH box helicase family protein [Oxytricha trifallax]
Length = 972
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/274 (44%), Positives = 175/274 (63%), Gaps = 9/274 (3%)
Query: 2 LFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
LFSAT+P WVK ++R+YL N +DL N K A+ ++ +I +K + L+DL+
Sbjct: 341 LFSATIPLWVKNVARQYLKPNYRLVDLAQNLTNKTAKSVQHLSICCPEQNKMSTLADLLI 400
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIAS--EALHGDISQHQRERTLNGFRQGKFTVL 118
Y G+ IVFTQTK DA+ +L LT I E +HGDI Q+QRE TL FR GKF+VL
Sbjct: 401 CYGGDGRAIVFTQTKVDAN--ALILTDKIKQDIEVMHGDIPQNQREVTLKRFRDGKFSVL 458
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVA+RGLDIPNVDL+I E PN+ ET++HRSGRT RAGK G I +T + ++
Sbjct: 459 VATDVASRGLDIPNVDLVIQVEPPNEVETYIHRSGRTARAGKMGVCITFYTKKSQYMIQQ 518
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD--- 235
+E G KF+ + P +DV+ +S++ ++ L+ V+ + + +FT A+ LI+ G +
Sbjct: 519 IESQAGIKFKNIGIPSAQDVIRASSKLMLKNLDQVNDQVIPYFTEAAKDLIDMCGGNQEK 578
Query: 236 ALAAALAQLSGFSRPP-SSRSLINHEQGWVTLQL 268
AL ALA +SG+ + +RSLI ++ +TL+L
Sbjct: 579 ALCKALAYISGYYKTAFQTRSLITGQERQITLEL 612
>gi|449504709|ref|XP_002190981.2| PREDICTED: nucleolar RNA helicase 2-like [Taeniopygia guttata]
Length = 716
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 194/332 (58%), Gaps = 17/332 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ IDL+G + +K A ++ AI + + ++ D+I
Sbjct: 322 LLFSATCPHWVYDVAKKYMKTRYEQIDLIGKKTQKAATTVEHLAIECHWSQRAAVIGDVI 381
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TIVF +TK++A+E++L + ++LHGDI Q QRE TL GFR G F VL
Sbjct: 382 QVYSGSQGRTIVFCETKKEANELALNASIKQDCQSLHGDIPQKQREITLKGFRNGSFKVL 441
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + +R
Sbjct: 442 VATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQRKEEYQLRH 501
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D++++S++ + L+ V ++E+F +AQ LI+EKG +AL
Sbjct: 502 VEQKAGITFKRVGVPTATDIIKASSKDAMRCLDSVPQTAIEYFRESAQLLIKEKGPVNAL 561
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSL+N + G+VT+ L S + R + L D +
Sbjct: 562 AAALAHISG-ATSIEQRSLLNSDVGFVTMILRCSEEMSNMSYAWRRLREVLGDDIDRKVN 620
Query: 298 EI----GKIHIIADDRVQGAVFDLPEEIAKEL 325
+ GK+ G FD+P KE+
Sbjct: 621 RMCFLKGKM---------GVCFDVPVADQKEI 643
>gi|301111464|ref|XP_002904811.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262095141|gb|EEY53193.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 681
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 137/360 (38%), Positives = 212/360 (58%), Gaps = 24/360 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+P WVK ++ KY+ ++LV + D++ + ++ AI + T+L++L+
Sbjct: 294 LLFSATIPKWVKDVADKYMKKAEYVNLVKDSDDQASTDVQHIAIPCHWQGRPTLLANLLG 353
Query: 61 VYAKG-GKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
VYAK +TI+F +TK+D +E+++ + LHGDI+Q QRE T+ FR+G+ +L+
Sbjct: 354 VYAKKDSRTIIFAETKKDCNELAVHPEIKTDCQVLHGDIAQEQRETTMKAFREGRLRLLI 413
Query: 120 ATDVAARGLDIPNVDLIIHYELPN------DPETFVHRSGRTGRAGKEGTAILMFTSSQR 173
ATDVAARGLD+ NVDL+I+ E P D +T+VHRSGRTGRAGK+G I ++T+ QR
Sbjct: 414 ATDVAARGLDM-NVDLVINSEPPRKMSGMADVDTYVHRSGRTGRAGKKGICITLYTNRQR 472
Query: 174 RTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG 233
+ +ER +G KF PP ED++++SA + + ++ V P +E F A+ L+E
Sbjct: 473 DQLNQIERKIGNKFIMKGPPDQEDLIKASAAKALKEIDNVDPSMIEIFQEKARELLETME 532
Query: 234 TD-ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVM--GFLSD 290
+ LAAALA ++G ++PP SL++ +VT+ T S F+ A+ + D
Sbjct: 533 PEKCLAAALACITGHTKPPRRTSLMSGVPDYVTVLFT-----SSNFIRAKGYVWNAVNRD 587
Query: 291 VYPTAADEIGKIHIIADDRVQGAVFDLPEEIA-KELLNKQIPPG--NTISKITK-LPALQ 346
+ + +I ++ + D GA FDLP IA ELL Q+ N I K LP LQ
Sbjct: 588 IPEEISKDIKQMTLTED--AMGACFDLP--IAGLELLETQMEESGMNCPYSIPKTLPKLQ 643
>gi|125606362|gb|EAZ45398.1| hypothetical protein OsJ_30047 [Oryza sativa Japonica Group]
Length = 685
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 141/355 (39%), Positives = 203/355 (57%), Gaps = 20/355 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDN-PLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WVKKLS ++L + +DLVG++ K + ++ A+ ++ ++ D+I
Sbjct: 293 LLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASVRHLALPCNRAARAQVIPDII 352
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y++GG+TI+FT+TK A ++S I S ALHGD++Q QRE L GFR GKF VLV
Sbjct: 353 RCYSRGGRTIIFTETKESASDLS---GLIAGSRALHGDVAQAQREVILAGFRSGKFLVLV 409
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
AT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A+++F + V +
Sbjct: 410 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRYKFNVNRI 469
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG---TDA 236
ER+ G KFE +S P DV +S+ + ++ V + F A++L+ G D
Sbjct: 470 ERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVSDSVIPVFREQAEQLLNSSGMSAVDL 529
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQL-TRDSAFSRGFMSARSVMGFLSDVYPTA 295
LA ALA+ G++ RSL++ TL L T S ++ GF V+ L P
Sbjct: 530 LAKALAKAVGYT-DIKKRSLLSSMDNHTTLLLQTGRSVYAAGF-----VLSTLKRFMPEE 583
Query: 296 --ADEIGKIHIIADDRVQGAVFDLPE-EIAKELLNKQIPPGNTISKITKLPALQD 347
AD G I I AD GAVFD+P E+ + Q T+ ++ +LP LQ+
Sbjct: 584 RLADVKG-ITITADG--TGAVFDVPSAEVEDYIQGAQNAAMVTVEEVKQLPPLQE 635
>gi|326429375|gb|EGD74945.1| DEAD box polypeptide 47 isoform 1 [Salpingoeca sp. ATCC 50818]
Length = 711
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 141/352 (40%), Positives = 207/352 (58%), Gaps = 10/352 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP ++K KY+ +D VG + + + G++ A+ ++ T+++D++
Sbjct: 300 ILFSATMPPFIKSTLTKYMPEHKVVDTVGKEMNRTSTGVQHLALRCPWQARNTVIADVVQ 359
Query: 61 VYAKG-GKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
VY+ G+T++FTQTKRDA+E++L T + LHGDI+Q QRE +L FR GK LV
Sbjct: 360 VYSGAHGRTMIFTQTKRDANELALNDTLKQEVQVLHGDIAQKQRELSLQCFRDGKVRCLV 419
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+DIP VDL++ E P D E+++HRSGRTGRAG++GT I + +Q + +R +
Sbjct: 420 ATDVAARGIDIPEVDLVVQCEPPKDVESYIHRSGRTGRAGRKGTCICFYKPNQEQQLREV 479
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG--TDAL 237
ER G F + P D++++SA L+ V + + +F AQ IEEKG DAL
Sbjct: 480 ERRAGISFTRIGAPQPADIIKASARDATRFLDSVTNDVLVYFQEAAQAFIEEKGNAVDAL 539
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSL++ +G+ LT D+ RG SV+G P
Sbjct: 540 AAALAHISG-STTIKGRSLLSSLEGFTAFHLTTDTEI-RGKAFVFSVLGHH---LPREVR 594
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELL-NKQIPPGNTISKITKLPALQDD 348
E + + DR+ GAVFDLP + K + N P ++ KLP LQ++
Sbjct: 595 EAVRGIRLQKDRM-GAVFDLPSSMMKTIKDNWSDTPNLRLTVAEKLPELQEE 645
>gi|115480217|ref|NP_001063702.1| Os09g0520700 [Oryza sativa Japonica Group]
gi|75322251|sp|Q650T9.1|RH7_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 7
gi|52076165|dbj|BAD46678.1| putative RNA helicase [Oryza sativa Japonica Group]
gi|113631935|dbj|BAF25616.1| Os09g0520700 [Oryza sativa Japonica Group]
Length = 696
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 142/356 (39%), Positives = 205/356 (57%), Gaps = 22/356 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDN-PLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WVKKLS ++L + +DLVG++ K + ++ A+ ++ ++ D+I
Sbjct: 304 LLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASVRHLALPCNRAARAQVIPDII 363
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIA-SEALHGDISQHQRERTLNGFRQGKFTVL 118
Y++GG+TI+FT+TK A + L+ +IA S ALHGD++Q QRE L GFR GKF VL
Sbjct: 364 RCYSRGGRTIIFTETKESASD----LSGLIAGSRALHGDVAQAQREVILAGFRSGKFLVL 419
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A+++F + V
Sbjct: 420 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRYKFNVNR 479
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG---TD 235
+ER+ G KFE +S P DV +S+ + ++ V + F A++L+ G D
Sbjct: 480 IERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVSDSVIPVFREQAEQLLNSSGMSAVD 539
Query: 236 ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL-TRDSAFSRGFMSARSVMGFLSDVYPT 294
LA ALA+ G++ RSL++ TL L T S ++ GF V+ L P
Sbjct: 540 LLAKALAKAVGYTD-IKKRSLLSSMDNHTTLLLQTGRSVYAAGF-----VLSTLKRFMPE 593
Query: 295 A--ADEIGKIHIIADDRVQGAVFDLPE-EIAKELLNKQIPPGNTISKITKLPALQD 347
AD G I I AD GAVFD+P E+ + Q T+ ++ +LP LQ+
Sbjct: 594 ERLADVKG-ITITADG--TGAVFDVPSAEVEDYIQGAQNAAMVTVEEVKQLPPLQE 646
>gi|125564407|gb|EAZ09787.1| hypothetical protein OsI_32075 [Oryza sativa Indica Group]
Length = 685
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 141/355 (39%), Positives = 203/355 (57%), Gaps = 20/355 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDN-PLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WVKKLS ++L + +DLVG++ K + ++ A+ ++ ++ D+I
Sbjct: 293 LLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASVRHLALPCNRAARAQVIPDII 352
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y++GG+TI+FT+TK A ++S I S ALHGD++Q QRE L GFR GKF VLV
Sbjct: 353 RCYSRGGRTIIFTETKESASDLS---GLIAGSRALHGDVAQAQREVILAGFRSGKFLVLV 409
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
AT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A+++F + V +
Sbjct: 410 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRYKFNVNRI 469
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG---TDA 236
ER+ G KFE +S P DV +S+ + ++ V + F A++L+ G D
Sbjct: 470 ERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVSDSVIPVFREQAEQLLNSSGMSAVDL 529
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVT-LQLTRDSAFSRGFMSARSVMGFLSDVYPT- 294
LA ALA+ G++ RSL++ T L LT S ++ GF V+ L P
Sbjct: 530 LAKALAKAVGYT-DIKKRSLLSSMDNHTTLLLLTGRSVYAAGF-----VLSTLKRFMPEE 583
Query: 295 -AADEIGKIHIIADDRVQGAVFDLPE-EIAKELLNKQIPPGNTISKITKLPALQD 347
AD G I I AD GAVFD+P E+ + Q T+ ++ +LP LQ+
Sbjct: 584 RLADVKG-ITITADG--TGAVFDVPSAEVEDYIQGAQNAAMVTVEEVKQLPPLQE 635
>gi|345798963|ref|XP_851746.2| PREDICTED: nucleolar RNA helicase 2 [Canis lupus familiaris]
Length = 785
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 156/430 (36%), Positives = 236/430 (54%), Gaps = 39/430 (9%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 374 LLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 433
Query: 60 TVYAK-GGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S ++ +++LHGDI Q QRE TL GFR G F VL
Sbjct: 434 RVYSGFHGRTIIFCETKKEAQELSQNVSIRQDAQSLHGDIPQKQREITLKGFRNGDFGVL 493
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 494 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFYQHKEEYQLAQ 553
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 554 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 613
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN + G+VT+ + M +S + +
Sbjct: 614 AAALAHISG-ATSVDQRSLINSDAGFVTM-----------ILRCSIEMPNISYAWKELKE 661
Query: 298 EIGKIHIIADDRV---------QGAVFDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V QG FD+P E+ K +S T+ P L
Sbjct: 662 QLGE---DIDSKVKGMVFLKGKQGVCFDVPTAALTEIQEKWHDSRRWQLSVATEQPEL-- 716
Query: 348 DGPSSDNYGRFSSRDRFSRGGGSRFSRGGARG--GARGGGSMDRRGFRSSRSWGSDDEDG 405
+GP + Y F + SR GSR R G+RG G R G R FR RS G + +
Sbjct: 717 EGP-REGYRNFRGQREGSR--GSRGQREGSRGFRGQREGN----RSFRGQRSRGGNKNNR 769
Query: 406 FSSSRGGRSF 415
F + RSF
Sbjct: 770 FQNKGQKRSF 779
>gi|432852515|ref|XP_004067286.1| PREDICTED: nucleolar RNA helicase 2-like [Oryzias latipes]
Length = 775
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 130/351 (37%), Positives = 212/351 (60%), Gaps = 10/351 (2%)
Query: 1 MLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV ++++KY+ ++DL+G + ++ A ++ AI+ + + ++ D+I
Sbjct: 368 LLFSATCPPWVYEVAKKYMRPGCKHVDLIGKKTQRAATTVEHLAIACHWSQRAAVIGDVI 427
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A+E+S+ + +S+ LHGDI Q QRE TL GFR G F VL
Sbjct: 428 QVYSGSHGRTIIFCETKKEANELSMNASIKQSSQTLHGDIPQKQREITLKGFRNGAFEVL 487
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + +R
Sbjct: 488 VATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEEQLRY 547
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E G F V P D++++S++ V L+ V ++E+F +A++LIEE+G +AL
Sbjct: 548 VENKAGITFRRVGVPTANDIIKASSKDAVRFLDSVPVTAIEYFKESAEKLIEERGAVEAL 607
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSL+N + G+ T+Q+T + R++ L D + +
Sbjct: 608 AAALAHISG-ATSLEQRSLLNSDAGYTTIQMTCSQEMHNLGYAWRTIKEQLGDEF---EN 663
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELL-NKQIPPGNTISKITKLPALQD 347
I ++ + G FD+P + KE++ N Q ++ T+LP L++
Sbjct: 664 HIHRMTFLKGKN--GVCFDVPSDKVKEMMSNWQDGRRWQLTVATELPELEE 712
>gi|428186550|gb|EKX55400.1| hypothetical protein GUITHDRAFT_57670, partial [Guillardia theta
CCMP2712]
Length = 513
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 195/333 (58%), Gaps = 14/333 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLD--NPLNIDLV-GNQDEKLAEGIKLYAISTTATSKRTILSD 57
+LFSAT+P W+ + + KY D N ++DLV G Q ++ A I+ I S+ + D
Sbjct: 186 LLFSATIPDWIAQTTEKYFDKNNTAHVDLVSGQQGQETATRIEHLCIPCPWNSRARTIGD 245
Query: 58 LITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEA--LHGDISQHQRERTLNGFRQGK 114
++ YA GKTI+FT+TK++A+E LAL I + LHGDI+Q QRE T FR GK
Sbjct: 246 IVLCYAGSHGKTIIFTETKKEANE--LALDDAIKQDCAVLHGDIAQAQRETTFQAFRDGK 303
Query: 115 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 174
F LVATDVAARGLDIP VDL+I D +T+VHRSGRTGRAG+ G A+ FT +
Sbjct: 304 FRCLVATDVAARGLDIPEVDLVIMCHPTKDADTYVHRSGRTGRAGRSGVAVTFFTPREMH 363
Query: 175 TVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG- 233
+R++E + K +S P E++++++A + ++ VH + + F TA+ +I++ G
Sbjct: 364 QLRAIEWRIKTKMRQISAPQPEEIVKANARDIKLSVEEVHSDVLPLFEKTAEEMIQDMGA 423
Query: 234 TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYP 293
T AL AALA ++G ++P +RSL++ +G+ T + ++ +R V L V P
Sbjct: 424 TKALCAALAVIAGQTKPLPARSLLSSLEGFKTFVIKT----TQPMAESRMVFVLLRKVLP 479
Query: 294 TA-ADEIGKIHIIADDRVQGAVFDLPEEIAKEL 325
I I + + V GA FD+P++ +E
Sbjct: 480 QELVSSIKGIRLFKEQPVMGAAFDVPQDKVEEF 512
>gi|449703528|gb|EMD43965.1| ATP-dependent RNA helicase, putative [Entamoeba histolytica KU27]
Length = 695
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 134/351 (38%), Positives = 194/351 (55%), Gaps = 11/351 (3%)
Query: 1 MLFSATMPSWVKKLSRKYL-DNPLNIDL-VGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
+LFSATMP+WVK++S KYL D+ ID+ VGN ++ + K A SK ++DL
Sbjct: 253 LLFSATMPAWVKEISEKYLRDDAEVIDVTVGNT--QVPKNAKHLACRIFYQSKTQTIADL 310
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
I VY + G+TIVF TK + + ++A+ I + LHGDI Q QRE+TLNGFR+ KF VL
Sbjct: 311 IRVYGRTGRTIVFCDTKAECTDCAIAINPIFECQQLHGDIQQKQREQTLNGFRENKFNVL 370
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLDI VDLII +P D +VHR+GRT RAGKEGT I +FT + ++
Sbjct: 371 VATDVAARGLDISGVDLIIMTHVPKDIPQYVHRAGRTARAGKEGTTITLFTRKELPQLQL 430
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD-AL 237
+E + F+ + P + E + + + + + E F +++L+E + L
Sbjct: 431 IESRIKIHFQRIGTPQKAQIAEVTCGNLPEEIKEIPDATAELFRDISKKLLETGDAETVL 490
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
+A LS S S RSL+ E G TL + GF + ++G + P+ D
Sbjct: 491 CKVIASLSTVSNDDSDRSLLQGEPGVKTL-FMETKGTTTGFSGTKFLLG--KTLEPSEID 547
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDD 348
++G++++ D V FDLP +IA +LL + I IT DD
Sbjct: 548 KLGEVYVYKDHFV---FFDLPTKIANKLLKSKSKWSKAIVNITVPAYFPDD 595
>gi|407042825|gb|EKE41557.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
Length = 667
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 153/428 (35%), Positives = 223/428 (52%), Gaps = 26/428 (6%)
Query: 1 MLFSATMPSWVKKLSRKYL-DNPLNIDL-VGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
+LFSATMP+WVK++S KYL D+ ID+ VGN ++ + K A SK ++DL
Sbjct: 253 LLFSATMPAWVKEISEKYLRDDAEVIDVTVGNT--QVPKNAKHLACRIFYQSKTQTIADL 310
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
I VY + G+TIVF TK + + ++A+ I + LHGDI Q QRE+TLNGFR+ KF VL
Sbjct: 311 IRVYGRTGRTIVFCDTKAECTDCAIAINPIFECQQLHGDIQQKQREQTLNGFRENKFNVL 370
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLDI VDLII +P D +VHR+GRT RAGKEGT I +FT + ++
Sbjct: 371 VATDVAARGLDISGVDLIIMTHVPKDIPQYVHRAGRTARAGKEGTTITLFTRKELPQLQL 430
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD-AL 237
+E + F+ + P + E + + + + + E F +++L+E + L
Sbjct: 431 IESRIKIHFQRIGTPQKAQIAEVTCGNLPEEIKEIPDATAELFRDISKKLLETGDAETVL 490
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
+A LS S S RSL+ E G TL + GF + ++G + P+ D
Sbjct: 491 CKVIASLSTVSNDDSDRSLLQGEPGVKTL-FMETKGTTTGFSGTKFLLG--KTLEPSEID 547
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDD---GPSSDN 354
++G++++ D V FDLP +IA +LL + I IT DD G S D
Sbjct: 548 KLGEVYVYKDHFV---FFDLPTKIANKLLKSKSKWSKAIVNITVPAYFPDDVGIGNSKD- 603
Query: 355 YGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRS-------WGSDDEDGFS 407
+ +R +G G+ GG R D + S S +G++ DG S
Sbjct: 604 ----PNEERGRKGSGNDRRDGGERRRDGNDRRRDGNDRKKSESDKKDRKRYGNNKSDGNS 659
Query: 408 SSRGGRSF 415
S +G +F
Sbjct: 660 SRKGHITF 667
>gi|183234688|ref|XP_649929.2| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|169800959|gb|EAL44543.2| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
Length = 723
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 134/351 (38%), Positives = 194/351 (55%), Gaps = 11/351 (3%)
Query: 1 MLFSATMPSWVKKLSRKYL-DNPLNIDL-VGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
+LFSATMP+WVK++S KYL D+ ID+ VGN ++ + K A SK ++DL
Sbjct: 253 LLFSATMPAWVKEISEKYLRDDAEVIDVTVGNT--QVPKNAKHLACRIFYQSKTQTIADL 310
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
I VY + G+TIVF TK + + ++A+ I + LHGDI Q QRE+TLNGFR+ KF VL
Sbjct: 311 IRVYGRTGRTIVFCDTKAECTDCAIAINPIFECQQLHGDIQQKQREQTLNGFRENKFNVL 370
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLDI VDLII +P D +VHR+GRT RAGKEGT I +FT + ++
Sbjct: 371 VATDVAARGLDISGVDLIIMTHVPKDIPQYVHRAGRTARAGKEGTTITLFTRKELPQLQL 430
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD-AL 237
+E + F+ + P + E + + + + + E F +++L+E + L
Sbjct: 431 IESRIKIHFQRIGTPQKAQIAEVTCGNLPEEIKEIPDATAELFRDISKKLLETGDAETVL 490
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
+A LS S S RSL+ E G TL + GF + ++G + P+ D
Sbjct: 491 CKVIASLSTVSNDDSDRSLLQGEPGVKTL-FMETKGTTTGFSGTKFLLG--KTLEPSEID 547
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDD 348
++G++++ D V FDLP +IA +LL + I IT DD
Sbjct: 548 KLGEVYVYKDHFV---FFDLPTKIANKLLKSKSKWSKAIVNITVPAYFPDD 595
>gi|194376400|dbj|BAG62959.1| unnamed protein product [Homo sapiens]
Length = 711
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 145/387 (37%), Positives = 220/387 (56%), Gaps = 26/387 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 323 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 382
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 383 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 442
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 443 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 502
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 503 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 562
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 563 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESLEEIQDVSCAWKELNRKLSS---NAVS 618
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDNY 355
+I ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 619 QITRMCLLKGN--MGVCFDVPTTESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN- 675
Query: 356 GRFSSRDRFSRGGGSRFSRGGARGGAR 382
SR SR G+R G+R
Sbjct: 676 --------------SRQSRQGSRSGSR 688
>gi|37748194|gb|AAH59237.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
Length = 851
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 151/426 (35%), Positives = 232/426 (54%), Gaps = 46/426 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 444 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVI 503
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK+DA E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 504 RVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVL 563
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + + +
Sbjct: 564 VATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQ 623
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 624 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 683
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN + G+VT+ + M +S + +
Sbjct: 684 AAALAHISGATS-VDQRSLINSQAGFVTM-----------ILRCSIEMPNISYAWKELKE 731
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+ E E+ K + ++ T+ P L
Sbjct: 732 QLGE---SIDAKVKGMVFLKGKLGVCFDVRTEAVTEIQEKWHDSRHWQLTVATEQPEL-- 786
Query: 348 DGPSSDNYGRFSSRD------RFSRGGGSRFSRGGARGGAR--------GGGSMDRRGFR 393
+GP GR RD R RGG F G RGG+R GG +R F
Sbjct: 787 EGPPDGYRGRMGQRDGSRGAFRGQRGGSRNFRGQGQRGGSRNFRGQRPGGGNRGQKRSF- 845
Query: 394 SSRSWG 399
S+++G
Sbjct: 846 -SKAFG 850
>gi|21410145|gb|AAH30895.1| Ddx21 protein, partial [Mus musculus]
Length = 689
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 151/426 (35%), Positives = 231/426 (54%), Gaps = 46/426 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 282 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVI 341
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK+DA E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 342 RVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVL 401
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + + +
Sbjct: 402 VATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQ 461
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 462 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 521
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN + G+VT+ + M +S + +
Sbjct: 522 AAALAHISG-ATSVDQRSLINSQAGFVTM-----------ILRCSIEMPNISYAWKELKE 569
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+ E E+ K ++ T+ P L
Sbjct: 570 QLGE---SIDAKVKGMVFLKGKLGVCFDVRTEAVTEIQEKWHDSRRWQLTVATEQPEL-- 624
Query: 348 DGPSSDNYGRFSSRD------RFSRGGGSRFSRGGARGGAR--------GGGSMDRRGFR 393
+GP GR RD R RGG F G RGG+R GG +R F
Sbjct: 625 EGPPDGYRGRMGQRDGSRGAFRGQRGGSRNFRGQGQRGGSRNFRGQRPGGGNRGQKRSF- 683
Query: 394 SSRSWG 399
S+++G
Sbjct: 684 -SKAFG 688
>gi|187960121|ref|NP_001120807.1| nucleolar RNA helicase 2 [Danio rerio]
gi|169642686|gb|AAI60629.1| Ddx21 protein [Danio rerio]
Length = 759
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 138/356 (38%), Positives = 212/356 (59%), Gaps = 22/356 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNP-LNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT PSWV +++KY+ + +++DL+G + +K A ++ AI+ + + +++ D+I
Sbjct: 352 LLFSATCPSWVYDVAKKYMRSQFIHVDLIGKKTQKAATTVEHLAIACHWSQRASVIGDVI 411
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TIVF +TK++A E+SL + ++++LHGDI Q QRE TL GFR G F VL
Sbjct: 412 QVYSGSHGRTIVFCETKKEATELSLNTSIKQSAQSLHGDIPQKQREVTLKGFRNGSFEVL 471
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I PND E+++HRSGRTGRAG+ G I + + ++
Sbjct: 472 VATNVAARGLDIPEVDLVIQSSPPNDVESYIHRSGRTGRAGRTGICICFYQRKEESQLKF 531
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++SS++ V L+ V +V +F AQ LI+++G +AL
Sbjct: 532 VEQKAGITFKRVGVPTAYDIIQSSSKDAVRFLDSVPAVAVGYFREAAQELIQQRGAVEAL 591
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN E G FS +S M +S + +
Sbjct: 592 AAALAHISG-ATSLEQRSLINSEPG-----------FSSMILSCSQEMHSISFAWRGLKE 639
Query: 298 EIGK------IHIIADDRVQGAVFDLPEEIAKELLNK-QIPPGNTISKITKLPALQ 346
++G+ H++ +G FD+P KE+ K Q T+S T+LP L+
Sbjct: 640 QLGEEIDQHISHMVFIKGKKGVCFDVPVSKLKEVQEKWQDSRRWTLSTATQLPELE 695
>gi|16975510|gb|AAD43959.3|AF159131_1 nucleolar RNA helicase II/Gu [Mus musculus]
Length = 851
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 151/426 (35%), Positives = 231/426 (54%), Gaps = 46/426 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 444 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVI 503
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK+DA E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 504 RVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVL 563
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + + +
Sbjct: 564 VATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQ 623
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 624 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 683
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN + G+VT+ + M +S + +
Sbjct: 684 AAALAHISGATS-VDQRSLINSQAGFVTM-----------ILRCSIEMPNISYAWKELKE 731
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+ E E+ K ++ T+ P L
Sbjct: 732 QLGE---SIDAKVKGMVFLKGKLGVCFDVRTEAVTEIQEKWHDSRRWQLTVATEQPEL-- 786
Query: 348 DGPSSDNYGRFSSRD------RFSRGGGSRFSRGGARGGAR--------GGGSMDRRGFR 393
+GP GR RD R RGG F G RGG+R GG +R F
Sbjct: 787 EGPQDGYRGRMGQRDGSRGAFRGQRGGSRNFRGQGQRGGSRNFRGQRPGGGNRGQKRSF- 845
Query: 394 SSRSWG 399
S+++G
Sbjct: 846 -SKAFG 850
>gi|7385089|gb|AAF61690.1|AF220365_1 nucleolar RNA helicase II/Gu [Mus musculus]
gi|148700138|gb|EDL32085.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_a [Mus
musculus]
Length = 805
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 151/426 (35%), Positives = 231/426 (54%), Gaps = 46/426 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 398 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVI 457
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK+DA E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 458 RVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVL 517
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + + +
Sbjct: 518 VATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQ 577
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 578 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 637
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN + G+VT+ + M +S + +
Sbjct: 638 AAALAHISGATS-VDQRSLINSQAGFVTM-----------ILRCSIEMPNISYAWKELKE 685
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+ E E+ K ++ T+ P L
Sbjct: 686 QLGE---SIDAKVKGMVFLKGKLGVCFDVRTEAVTEIQEKWHDSRRWQLTVATEQPEL-- 740
Query: 348 DGPSSDNYGRFSSRD------RFSRGGGSRFSRGGARGGAR--------GGGSMDRRGFR 393
+GP GR RD R RGG F G RGG+R GG +R F
Sbjct: 741 EGPPDGYRGRMGQRDGSRGAFRGQRGGSRNFRGQGQRGGSRNFRGQRPGGGNRGQKRSF- 799
Query: 394 SSRSWG 399
S+++G
Sbjct: 800 -SKAFG 804
>gi|302791703|ref|XP_002977618.1| hypothetical protein SELMODRAFT_107027 [Selaginella moellendorffii]
gi|300154988|gb|EFJ21622.1| hypothetical protein SELMODRAFT_107027 [Selaginella moellendorffii]
Length = 663
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 193/331 (58%), Gaps = 12/331 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSATMPSWVK+++ ++L N +DLVG++ K + +K + +++ +++D+I
Sbjct: 266 LLFSATMPSWVKEIATRFLKPNKKTVDLVGDEKMKASNNVKHLLLQCAYSARSQMIADVI 325
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
VY GG+ IVFT+TK DA E++ +L + +A LHGDI Q QRE TL GFR KF VLV
Sbjct: 326 KVYGSGGRVIVFTETKNDASELAGSLGTNVA-RPLHGDIPQAQREHTLAGFRSAKFLVLV 384
Query: 120 ATDVAARGLDIPNVDLIIHY-ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
ATDVAARGLDI +V LII E P D ET++HRSGRTGRAG G A++MF + +
Sbjct: 385 ATDVAARGLDINDVQLIIQQCEPPKDVETYIHRSGRTGRAGNTGIAVMMFDRKKEYMIPM 444
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEE---KGTD 235
+E G KFE ++PP + + S+ + ++ V V FF A++L+ + +
Sbjct: 445 IEAKAGFKFEKITPPQPSTIAKESSFTAIKAVSAVSDSVVPFFKEAAEQLVSDCKRPAVE 504
Query: 236 ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTA 295
LA ALA+++G + +H+ L S G++ ++ GFLS+
Sbjct: 505 LLAKALAKIAGCTEVKRRSLQTSHDDATTLLFEVSKPIHSVGYI-FNALRGFLSE---EC 560
Query: 296 ADEIGKIHIIADDRVQGAVFDLPEEIAKELL 326
+ I ++++ AD + AVFD+P + E L
Sbjct: 561 SSSIRRMNLTADGK--AAVFDVPSAMVDEFL 589
>gi|26368308|dbj|BAB26817.2| unnamed protein product [Mus musculus]
Length = 832
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 151/426 (35%), Positives = 231/426 (54%), Gaps = 46/426 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 425 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVI 484
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK+DA E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 485 RVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVL 544
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + + +
Sbjct: 545 VATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQ 604
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 605 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 664
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN + G+VT+ + M +S + +
Sbjct: 665 AAALAHISGATS-VDQRSLINSQAGFVTM-----------ILRCSIEMPNISYAWKELKE 712
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+ E E+ K ++ T+ P L
Sbjct: 713 QLGE---SIDAKVKGMVFLKGKLGVCFDVRTEAVTEIQEKWHDSRRWQLTVATEQPEL-- 767
Query: 348 DGPSSDNYGRFSSRD------RFSRGGGSRFSRGGARGGAR--------GGGSMDRRGFR 393
+GP GR RD R RGG F G RGG+R GG +R F
Sbjct: 768 EGPPDGYRGRMGQRDGSRGAFRGQRGGSRNFRGQGQRGGSRNFRGQRPGGGNRGQKRSF- 826
Query: 394 SSRSWG 399
S+++G
Sbjct: 827 -SKAFG 831
>gi|72384374|ref|NP_062426.2| nucleolar RNA helicase 2 [Mus musculus]
gi|341940509|sp|Q9JIK5.3|DDX21_MOUSE RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
protein 21; AltName: Full=Gu-alpha; AltName:
Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
RNA helicase II; AltName: Full=RH II/Gu
gi|74213643|dbj|BAE35625.1| unnamed protein product [Mus musculus]
gi|112180476|gb|AAH43655.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
gi|148700139|gb|EDL32086.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Mus
musculus]
Length = 851
Score = 218 bits (554), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 151/426 (35%), Positives = 231/426 (54%), Gaps = 46/426 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 444 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVI 503
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK+DA E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 504 RVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVL 563
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + + +
Sbjct: 564 VATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQ 623
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 624 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 683
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN + G+VT+ + M +S + +
Sbjct: 684 AAALAHISGATS-VDQRSLINSQAGFVTM-----------ILRCSIEMPNISYAWKELKE 731
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+ E E+ K ++ T+ P L
Sbjct: 732 QLGE---SIDAKVKGMVFLKGKLGVCFDVRTEAVTEIQEKWHDSRRWQLTVATEQPEL-- 786
Query: 348 DGPSSDNYGRFSSRD------RFSRGGGSRFSRGGARGGAR--------GGGSMDRRGFR 393
+GP GR RD R RGG F G RGG+R GG +R F
Sbjct: 787 EGPPDGYRGRMGQRDGSRGAFRGQRGGSRNFRGQGQRGGSRNFRGQRPGGGNRGQKRSF- 845
Query: 394 SSRSWG 399
S+++G
Sbjct: 846 -SKAFG 850
>gi|449667535|ref|XP_002167654.2| PREDICTED: nucleolar RNA helicase 2-like [Hydra magnipapillata]
Length = 685
Score = 217 bits (553), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 142/432 (32%), Positives = 233/432 (53%), Gaps = 28/432 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNI-DLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
LF T+P W+++ S+KYL + L + DL+G K A ++ I + + ++ D++
Sbjct: 240 FLFFGTVPPWLQQNSKKYLSSNLKVFDLIGEDKNKGATPVQHKVIKCSYWERPLLIKDIM 299
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
+Y+ K GKTI+FT TK++A+E+S+ +SI S+ LHGDISQ QRE TL GFR GKF L
Sbjct: 300 QLYSGKFGKTIIFTTTKQEANELSVE-SSIPDSQVLHGDISQSQREITLQGFRNGKFNCL 358
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
+ATDVAARGLDIP VDL+I E PND + ++HR+GRTGRAG+ G ++ + Q + +
Sbjct: 359 IATDVAARGLDIPEVDLVIQTEPPNDIDFYIHRAGRTGRAGRSGVCVVFYKPGQESEIAA 418
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALA 238
+E+ G FE ++PP E+++ S A+ + +L V+ + + FF A+ LIE+KG +
Sbjct: 419 VEKRTGVTFEKITPPNPEEIVSSCADDAIRSLEKVNSDVISFFIKPARELIEKKGAEEAL 478
Query: 239 AALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE 298
AA + ++RSL+ +G+ T + + + + + D +
Sbjct: 479 AAALAYVSGTTELANRSLLTSRKGYTTYLMKQPVQLRNPTLIWNILRRYFDDEFIAGIKG 538
Query: 299 IGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGN---TISKITKLPAL-QDDGPSSDN 354
+ + D++ G VFD+P E K + K++ G+ T+ K++KLP L + P +
Sbjct: 539 MR----MCQDKL-GCVFDVPTE--KISVIKEVWKGDRYATLEKLSKLPDLIEYSAPKEYS 591
Query: 355 YGRFSSRDRFSRGGGSRFSRGGARGGARGGGSM-----------DRRGFRSSRSWGS--D 401
S + R G + +G + G S + RG +SR S +
Sbjct: 592 SETMSLKKNVFRNYGGNY-KGRENNSYQHGDSYKGRENSSYQQNNYRGNYNSREIYSKRN 650
Query: 402 DEDGFSSSRGGR 413
D + ++ S GG+
Sbjct: 651 DRNSYTKSSGGK 662
>gi|302786878|ref|XP_002975210.1| hypothetical protein SELMODRAFT_150370 [Selaginella moellendorffii]
gi|300157369|gb|EFJ23995.1| hypothetical protein SELMODRAFT_150370 [Selaginella moellendorffii]
Length = 626
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 193/331 (58%), Gaps = 12/331 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSATMPSWVK+++ ++L N +DLVG++ K + +K + +++ +++D+I
Sbjct: 229 LLFSATMPSWVKEIATRFLKPNKKTVDLVGDEKMKASNNVKHLLLQCAYSARSQMIADVI 288
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
VY GG+ IVFT+TK DA E++ +L + +A LHGDI Q QRE TL GFR KF VLV
Sbjct: 289 KVYGSGGRVIVFTETKNDASELAGSLGTNVA-RPLHGDIPQAQREHTLAGFRSAKFLVLV 347
Query: 120 ATDVAARGLDIPNVDLIIHY-ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
ATDVAARGLDI +V LII E P D ET++HRSGRTGRAG G A++MF + +
Sbjct: 348 ATDVAARGLDINDVQLIIQQCEPPKDVETYIHRSGRTGRAGNTGIAVMMFDRKKEYMIPM 407
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEE---KGTD 235
+E G KFE ++PP + + S+ + ++ V V FF A++L+ + +
Sbjct: 408 IEAKAGFKFEKITPPQPSTIAKESSFTAIKAVSAVSDSVVPFFKEAAEQLVSDCKRPAME 467
Query: 236 ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTA 295
LA ALA+++G + +H+ L S G++ ++ GFLS+
Sbjct: 468 LLAKALAKIAGCTEVKRRSLQTSHDDATTLLFEVSKPIHSVGYIF-NALRGFLSE---EC 523
Query: 296 ADEIGKIHIIADDRVQGAVFDLPEEIAKELL 326
+ I ++++ AD + AVFD+P + E L
Sbjct: 524 SSSIRRMNLTADGK--AAVFDVPSAMVDEFL 552
>gi|118358020|ref|XP_001012258.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
gi|89294025|gb|EAR92013.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
SB210]
Length = 744
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 134/367 (36%), Positives = 202/367 (55%), Gaps = 19/367 (5%)
Query: 1 MLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSATMPSWV ++RK+L ++ + IDLV N K ++ + AI+ + + D+I
Sbjct: 259 LLFSATMPSWVHDIARKFLREDRVLIDLVKNLGNKTSQDVTHLAINCPYFQRTEAIGDVI 318
Query: 60 TVYAKGG--KTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
Y G + I+F +TK +A+E+ L + LHGDI Q QRE T GFR+GKF
Sbjct: 319 LCYGGGAHSRVIIFCETKNEANEIMLKANIKQDVQVLHGDIPQKQREITFQGFREGKFKC 378
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVAT+VAARGLDIP VDLI+ E P + + ++HRSGRTGRAGK+G I +T Q+ +
Sbjct: 379 LVATNVAARGLDIPEVDLIVQLEPPKELDAYIHRSGRTGRAGKKGVCITFYTKKQQSLIE 438
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDA 236
+E+ K + V P D++ +S + L V+ + F + LI+E G +A
Sbjct: 439 RIEKKCHIKMQKVGAPQPADLIRASQNDIKKNLMSVNRTVLGIFKEVSVDLIQEFGPEEA 498
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPT-A 295
L A+A +SGF+ RSL+ +G+VT + S F RG + G++ + +P
Sbjct: 499 LERAIAFISGFTEKMKQRSLLCCLEGYVTYIVRTPSEF-RGL---GYIWGWVKNNFPAEC 554
Query: 296 ADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQI-------PPGNTISKITKLPALQDD 348
D I + AD++ GAVFD+ EE KE+ + I G + T +P ++++
Sbjct: 555 TDRIKGMKKFADNK--GAVFDVAEE-DKEVFDAYINELAEGTKQGLELEVATTIPEIEEE 611
Query: 349 GPSSDNY 355
G S Y
Sbjct: 612 GGYSQGY 618
>gi|297797185|ref|XP_002866477.1| hypothetical protein ARALYDRAFT_496396 [Arabidopsis lyrata subsp.
lyrata]
gi|297312312|gb|EFH42736.1| hypothetical protein ARALYDRAFT_496396 [Arabidopsis lyrata subsp.
lyrata]
Length = 669
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 140/365 (38%), Positives = 206/365 (56%), Gaps = 19/365 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+PSWVK +S ++L + IDLVGN K + ++ AI + ++ D+I
Sbjct: 285 LLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIPDII 344
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ Y+ GG+TI+F + K + E+S L S ALHG+I Q QRE TL GFR GKF+ LV
Sbjct: 345 SCYSSGGQTIIFAEKKNEVSELSGLLA---GSRALHGEIPQAQREVTLAGFRNGKFSTLV 401
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
AT+VAARGLDI +V LII E P + E ++HRSGRTGRAG G A+ ++ S++ +V +
Sbjct: 402 ATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTLY-ESRKSSVSRI 460
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA--- 236
E++ G KFE++S P +D+ + + + V V F A+ L+E G A
Sbjct: 461 EKEAGIKFEYISAPQPDDIARAVGMEAAENIKKVCDSVVPAFLGAAKELLESSGLSAEVL 520
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYP-TA 295
LA ALA+ +GF+ RSL+ + VTLQL + S V G L V P
Sbjct: 521 LAKALAKTAGFTE-IKKRSLLTSMENHVTLQLEA----GKPMYSPSYVYGLLRRVLPDDK 575
Query: 296 ADEIGKIHIIADDRVQGAVFDLPE-EIAKELLNKQIPPGN-TISKITKLPALQDDGP-SS 352
++I + + AD GAVFD+ + ++A L Q G+ ++ + ++P LQ+ P
Sbjct: 576 VEQIEGLSLTADK--SGAVFDVKQSDLALFLAAGQKSAGSMSLEVVKEMPKLQEREPLPQ 633
Query: 353 DNYGR 357
YGR
Sbjct: 634 KRYGR 638
>gi|75773731|gb|AAI04622.1| DDX50 protein [Bos taurus]
Length = 446
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 210/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 32 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 91
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 92 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 151
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 152 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 211
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 212 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 271
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 272 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKELNRKLSS---NAVS 327
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+I ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 328 QITRMCLLKGN--MGVCFDVPTTESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 384
>gi|291404256|ref|XP_002718616.1| PREDICTED: nucleolar protein GU2-like [Oryctolagus cuniculus]
Length = 780
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 151/416 (36%), Positives = 231/416 (55%), Gaps = 39/416 (9%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ +DL+G + +K A ++ AI + + ++ D+I
Sbjct: 370 LLFSATCPHWVFNVAKKYMKATYEQVDLIGKKTQKTAITVEHLAIKCHWSQRAAVIGDVI 429
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TIVF +TK++A E+S + +++LHGDI Q QRE TL GFR G F VL
Sbjct: 430 RVYSGHQGRTIVFCETKKEAQELSQNSSIKQDAQSLHGDIPQKQREITLKGFRNGDFGVL 489
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 490 VATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQ 549
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 550 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 609
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN + G+VT+ + M +S + +
Sbjct: 610 AAALAHISG-ATSVDQRSLINSDAGFVTM-----------ILRCSIEMPNISYAWKELKE 657
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +++G V FD+P E+ K +S T+ P L
Sbjct: 658 QLGE---DVDSKIKGMVFLKGKLGVCFDVPTAAVTEIQEKWHDSRRWQLSVATEQPEL-- 712
Query: 348 DGPSSDNYGRFSSRDRFSRGGGSRFSRGGARG--GARGGGSMDRRGFRSSRSWGSD 401
+GP + YG F + SR G R RGG+RG G R G RGFR R+ G +
Sbjct: 713 EGP-REGYGAFRGQRDGSR--GFRGQRGGSRGFRGQRDGS----RGFRGQRAGGGN 761
>gi|39644658|gb|AAH18637.2| DDX50 protein, partial [Homo sapiens]
Length = 423
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 210/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 9 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 68
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 69 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 128
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 129 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 188
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 189 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 248
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 249 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESLEEIQDVSCAWKELNRKLSS---NAVS 304
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+I ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 305 QITRMCLLKGN--MGVCFDVPTTESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 361
>gi|390472670|ref|XP_002756342.2| PREDICTED: nucleolar RNA helicase 2 [Callithrix jacchus]
Length = 797
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 158/434 (36%), Positives = 234/434 (53%), Gaps = 46/434 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 386 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIQCHWTQRAAVIGDVI 445
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 446 RVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVL 505
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 506 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQ 565
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 566 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 625
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN G+VT+ + M +S + +
Sbjct: 626 AAALAHISGATS-VDQRSLINSNVGFVTM-----------ILQCSIEMPNISYAWKELKE 673
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+P E+ K +S T+ P L
Sbjct: 674 QLGE---EIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEKWRDSRRWQLSVATEQPEL-- 728
Query: 348 DGPSSDNYGRF------SSRDRFSRGGGSRF--SRGGARG--GARGGGSMDRRGFRSSRS 397
+GP + YG F S R R G RF RGG RG G R GG G RS+RS
Sbjct: 729 EGP-REGYGGFRGQREGSRSFRGQRDGNRRFRGQRGGNRGPRGQRSGG-----GNRSNRS 782
Query: 398 WGSDDEDGFSSSRG 411
+ FS + G
Sbjct: 783 QDKGQKRSFSKAFG 796
>gi|329663131|ref|NP_001192982.1| ATP-dependent RNA helicase DDX50 [Bos taurus]
gi|296472173|tpg|DAA14288.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Bos taurus]
gi|440895816|gb|ELR47910.1| ATP-dependent RNA helicase DDX50 [Bos grunniens mutus]
Length = 737
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 210/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 323 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 382
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 383 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 442
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 443 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 502
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 503 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 562
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 563 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKELNRKLSS---NAVS 618
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+I ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 619 QITRMCLLKGN--MGVCFDVPTTESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 675
>gi|451172075|ref|NP_001263383.1| nucleolar RNA helicase 2 [Ovis aries]
Length = 783
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 156/430 (36%), Positives = 234/430 (54%), Gaps = 39/430 (9%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 372 LLFSATCPYWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 431
Query: 60 TVYAK-GGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S + +++LHGDI Q QRE TL GFR G F VL
Sbjct: 432 RVYSGFQGRTIIFCETKKEAQELSQNVAIRQDAQSLHGDIPQKQREITLKGFRNGDFGVL 491
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 492 VATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQ 551
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 552 VEQKAGIKFKRIGVPSPTEIIKASSKDAIRLLDSVPPTAIGHFKQSAEKLIEEKGAVEAL 611
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN E G+VT+ + M +S + +
Sbjct: 612 AAALAHISG-ATSVDQRSLINSEAGFVTM-----------ILRCSIEMPNISYAWKELKE 659
Query: 298 EIGKIHIIADDRV---------QGAVFDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V QG FD+P E+ K +S T+ P L
Sbjct: 660 QLGE---DIDSKVKGMVFLKGKQGVCFDIPTASVTEVQGKWHDSRRWQLSVATEQPEL-- 714
Query: 348 DGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGG-GSMDR-RGFRSSRSWGSDDEDG 405
+GP + Y F R R G F G R G RGG G +R R FR RS G + +
Sbjct: 715 EGP-REGYRNF----RGQREGNRGFR--GQREGNRGGRGQRERSRSFRGQRSGGGNKSNR 767
Query: 406 FSSSRGGRSF 415
F + RSF
Sbjct: 768 FQNKGQKRSF 777
>gi|345798960|ref|XP_850174.2| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Canis lupus
familiaris]
Length = 739
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 210/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 325 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 384
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 385 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 444
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 445 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 504
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 505 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 564
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 565 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKELNRKLSS---NAVS 620
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+I ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 621 QITRMCLLKGN--MGVCFDVPTTESERLQAEWHDSDWILSLPAKLPEIEEYYDGNTSSN 677
>gi|431904163|gb|ELK09585.1| Nucleolar RNA helicase 2 [Pteropus alecto]
Length = 784
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 159/443 (35%), Positives = 236/443 (53%), Gaps = 51/443 (11%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 373 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 432
Query: 60 TVYAK-GGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S ++ +++LHGDI Q QRE TL GFR G F VL
Sbjct: 433 RVYSGFHGRTIIFCETKKEAQELSQNVSIKQDAQSLHGDIPQKQREITLKGFRNGDFGVL 492
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 493 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFYQHKEEYQLAQ 552
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 553 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 612
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN + G+VT+ + M +S + +
Sbjct: 613 AAALAHISG-ATSVDQRSLINSDAGFVTM-----------ILQCSIEMPNISYAWKELKE 660
Query: 298 EIGKIHIIADDRV---------QGAVFDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V QG FD+P E+ K +S T+ P L
Sbjct: 661 QLGE---DIDSKVKGMVFLKGKQGVCFDVPTAAVTEIQEKWHDSRRWQLSVATEQPDL-- 715
Query: 348 DGPSSDNYGRFSSRDRFSRGGGSRFSRGGARG--GARGGGSMDRRGFRSSRSWGSDDEDG 405
+GP G S R + G R R G RG G R G R FR RS
Sbjct: 716 EGPRE---GYRSYRGQREGNRGFRGQREGNRGFRGQREGN----RNFRGQRSG------- 761
Query: 406 FSSSRGGRSFRSGNNRGSRFSTS 428
GGRS R NN+G + S S
Sbjct: 762 -----GGRSNRFQNNKGQKRSFS 779
>gi|387191793|gb|AFJ68623.1| hypothetical protein NGATSA_3007300, partial [Nannochloropsis
gaditana CCMP526]
Length = 800
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 140/361 (38%), Positives = 210/361 (58%), Gaps = 26/361 (7%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAIST--TATSKRTILSDL 58
+LFSAT PSWV+ ++RKYL NP+N+D VG + + A I+ A+ + ++++ +L D+
Sbjct: 368 LLFSATTPSWVQVIARKYLKNPINVDAVGGGN-RAATTIRHVAVKVPDSYSARKNVLEDV 426
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSIIASE---ALHGDISQHQRERTLNGFRQGKF 115
I ++ GG+ +VFTQTK +ADE L+ +S A+E LHGDI+Q QRE TL FR G F
Sbjct: 427 IAAHSCGGRVMVFTQTKSEADE--LSTSSPYAAENTRVLHGDITQRQRELTLRQFRDGFF 484
Query: 116 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT 175
VL+ATDVAARG+DIP VDL+I Y +D +++VHRSGRTGRAG+EGT++++++ +
Sbjct: 485 KVLIATDVAARGIDIPEVDLVIQYRPCDDSDSYVHRSGRTGRAGREGTSVIIYSEPEWFK 544
Query: 176 VRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
+R LE D+ KF+ V P +EDV+ L V E V +F A L+ G+D
Sbjct: 545 LRRLENDINIKFDKVGMPSIEDVVSGLCLAQTDKLKNVDAEVVPYFKAYAAELV--AGSD 602
Query: 236 A-----LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSD 290
A LA LA ++G + SRSL+ + G T+ D G + V+ F+
Sbjct: 603 APVEEMLARCLAAMTG-RKLTVSRSLLTGQHGMTTVVAEAD-----GPLREWDVLDFVKG 656
Query: 291 VYP-TAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNK---QIPPGNTISKITKLPALQ 346
+Y T I ++ + +R AVFDL AK ++ K P ++S +P L+
Sbjct: 657 LYEGTDRLFIPEVKFLW-NRPNAAVFDLDTAKAKIVMAKFAEAEAPVMSLSLCKDMPRLE 715
Query: 347 D 347
+
Sbjct: 716 N 716
>gi|351702494|gb|EHB05413.1| ATP-dependent RNA helicase DDX50 [Heterocephalus glaber]
Length = 737
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 138/359 (38%), Positives = 210/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 323 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 382
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 383 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 442
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 443 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 502
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 503 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 562
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS AA
Sbjct: 563 AAALAHISGAS-SFEPRSLITCDKGFVTMTLESPEEIQDVSCAWKELNRKLSS---NAAS 618
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+I ++ ++ G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 619 QITRMCLLKGK--MGVCFDVPTTESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSAN 675
>gi|344275095|ref|XP_003409349.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Loxodonta africana]
Length = 734
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 210/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 323 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 382
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 383 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 442
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 443 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 502
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 503 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 562
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 563 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKELNRKLSS---NAVS 618
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+I ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 619 QITRMCLLKGN--MGVCFDVPTTDSERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 675
>gi|395501398|ref|XP_003755082.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Sarcophilus harrisii]
Length = 736
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 124/271 (45%), Positives = 175/271 (64%), Gaps = 4/271 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ IDLVG +K A ++ AI + + ++ D+I
Sbjct: 320 LLFSATCPQWVYKVAKKYMKTKYEEIDLVGKMTQKTATTVEHLAIQCHWSQRAAVIGDVI 379
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E++L ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 380 QVYSGNDGRAIIFCETKKNVAEMALNPHIKQNAQCLHGDIAQSQREITLKGFREGNFKVL 439
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + ++R ++
Sbjct: 440 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPNERGQLKY 499
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E G F+ V P D+++S + + +L V +VEFF P+AQRLIEEKG DAL
Sbjct: 500 VEGKAGITFKRVGVPTTMDLVKSRSMDAIRSLASVSFVAVEFFRPSAQRLIEEKGAVDAL 559
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
AAALA +SG S RSLIN ++G+VT+ L
Sbjct: 560 AAALAHISGAS-SFEPRSLINSDKGFVTMTL 589
>gi|126343381|ref|XP_001380653.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Monodelphis domestica]
Length = 744
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 124/271 (45%), Positives = 175/271 (64%), Gaps = 4/271 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ IDLVG +K A ++ AI + + ++ D+I
Sbjct: 328 LLFSATCPQWVYKVAKKYMKTKYEEIDLVGKMTQKTATTVEHLAIQCHWSQRAAVIGDVI 387
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E++L ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 388 QVYSGNDGRAIIFCETKKNVAEMALNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 447
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + ++R ++
Sbjct: 448 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPNERGQLKY 507
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E G F+ V P D+++S + + +L V +VEFF P+AQRLIEEKG DAL
Sbjct: 508 VEGKAGITFKRVGVPTTMDLVKSRSMDAIRSLASVSFVAVEFFRPSAQRLIEEKGAVDAL 567
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
AAALA +SG S RSLIN ++G+VT+ L
Sbjct: 568 AAALAHISGASS-FEPRSLINSDKGFVTMTL 597
>gi|168015062|ref|XP_001760070.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688820|gb|EDQ75195.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 657
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 128/350 (36%), Positives = 196/350 (56%), Gaps = 11/350 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P+WV++++RK+L +DLVG++ K + +K + + + ++ D+I
Sbjct: 268 LLFSATLPTWVQQIARKFLKPERRTVDLVGDEKMKASNNVKHLLLPGHYSMRTQLVQDVI 327
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y GG+ IVFT+TK DA E++ L S A ALHGDI Q+QRE TL GFR KF+VLV
Sbjct: 328 QCYGSGGRIIVFTETKNDASELAGVLKSGTA-RALHGDIPQNQREVTLQGFRTSKFSVLV 386
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI +V L+I E P D ET++HRSGRTGRAG G ++L + + + +
Sbjct: 387 ATDVAARGLDINDVQLVIQCEPPRDAETYIHRSGRTGRAGNTGISVLFYDRKKEYMIPQI 446
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG---TDA 236
ER G KFE ++ P D+ ++S + V + F A+ L++ G D
Sbjct: 447 ERKAGFKFERIAAPQPADIAKASGNTATDGVLAVSDTVIPLFRQAAEDLVKSSGLPVLDV 506
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAA 296
LA A+A++SG + RSL+ TL L ++ + + +L +
Sbjct: 507 LAKAIAKISGQTE-LKRRSLLTSHDDATTLMLKANTKMYSPTYAFNCLRKYLPE---ETV 562
Query: 297 DEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQ 346
+E+ ++++ D GAVFD+P +E + +Q T+ + LP LQ
Sbjct: 563 NEVRRMNLTTD--CTGAVFDVPSRSVEEFIAEQEGENFTVEVLDALPELQ 610
>gi|281346962|gb|EFB22546.1| hypothetical protein PANDA_001615 [Ailuropoda melanoleuca]
Length = 710
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 210/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 296 LLFSATCPPWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 355
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 356 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 415
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 416 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 475
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 476 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 535
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 536 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESPEEIQDISCAWKELNRKLSS---NAVS 591
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+I ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 592 QITRMCLLKGN--MGVCFDVPTTESERLQAEWHDSDWILSLPAKLPEIEEYYDGNTSSN 648
>gi|410975241|ref|XP_003994042.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Felis catus]
Length = 739
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 210/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 325 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 384
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 385 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 444
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 445 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 504
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 505 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 564
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 565 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKELNRKLSS---NAVS 620
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+I ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 621 QITRMCLLKGN--MGVCFDVPTTESERLQAEWHDSDWILSLPAKLPEIEEYYDGNTSSN 677
>gi|12652909|gb|AAH00210.1| DDX50 protein, partial [Homo sapiens]
Length = 467
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 210/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 53 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 112
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 113 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 172
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 173 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 232
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 233 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 292
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 293 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESLEEIQDVSCAWKELNRKLSS---NAVS 348
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+I ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 349 QITRMCLLKGN--MGVCFDVPTTESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 405
>gi|426255664|ref|XP_004021468.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Ovis aries]
Length = 738
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 210/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 324 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 383
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 384 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 443
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 444 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 503
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 504 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 563
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 564 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESPEEIQDVSSAWKELNRKLSS---NAVS 619
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+I ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 620 QITRMCLLKGN--MGVCFDVPTTESERLQAEWRDSDWILSVPAKLPEIEEYYDGNTSSN 676
>gi|355683371|gb|AER97085.1| DEAD box polypeptide 50 [Mustela putorius furo]
Length = 736
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 210/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 323 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 382
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 383 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 442
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 443 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 502
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 503 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 562
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 563 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESPEEIEDISCAWKELNRKLSS---NAVS 618
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+I ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 619 QITRMCLLKGN--MGVCFDVPTTESERLQAEWHDSDWILSLPAKLPEIEEYYDGNTSSN 675
>gi|281346961|gb|EFB22545.1| hypothetical protein PANDA_001614 [Ailuropoda melanoleuca]
Length = 765
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 155/426 (36%), Positives = 232/426 (54%), Gaps = 22/426 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 345 LLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 404
Query: 60 TVYAK-GGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S ++ +++LHGDI Q QRE TL GFR G F VL
Sbjct: 405 RVYSGFHGRTIIFCETKKEAQELSQNVSIKQDAQSLHGDIPQKQREITLKGFRNGDFGVL 464
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 465 VATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQHKEEYQLAQ 524
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P +V F +A++LIEEKG +AL
Sbjct: 525 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAVSHFKQSAEKLIEEKGAVEAL 584
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN + G+VT+ L + + + LS+ +
Sbjct: 585 AAALAHISG-ATSVDQRSLINSDAGFVTMILRCSIEMPNISYAWKELKEQLSEDIDSKVK 643
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYG 356
G + + QG FD+P E+ K +S T+ P L +GP G
Sbjct: 644 --GMVFLKGK---QGVCFDVPTAAVTEIQEKWHDSRRWQLSVATEQPEL--EGPREGFRG 696
Query: 357 RFSSRDRFSRG-----GGSRFSRGGARGGARG--GGSMDRRGFRSSRSWGSDDEDGFSSS 409
F + SRG GSRF G R G R G RGFR RS G + + +
Sbjct: 697 -FRGQREGSRGFRGQREGSRFR--GQREGNRSFRGQREGNRGFRGQRSGGGNKSNRSQNK 753
Query: 410 RGGRSF 415
RSF
Sbjct: 754 GQKRSF 759
>gi|348685693|gb|EGZ25508.1| hypothetical protein PHYSODRAFT_326516 [Phytophthora sojae]
Length = 962
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 129/344 (37%), Positives = 205/344 (59%), Gaps = 20/344 (5%)
Query: 1 MLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WV ++ KY+ + ++LV + D++ + ++ AI + T+L++L+
Sbjct: 288 LLFSATIPKWVTDVADKYMAKDREYVNLVKDSDDQASTDVQHIAIPCHWQGRPTLLANLL 347
Query: 60 TVYAKG-GKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VYAK +TI+F +TK+D +E+++ + LHGDI+Q QRE T+ FR+G+ +L
Sbjct: 348 GVYAKKDSRTIIFAETKKDCNELAVHPEIKTDCQVLHGDIAQEQRETTMKAFREGRLRLL 407
Query: 119 VATDVAARGLDIPNVDLIIHYELPN------DPETFVHRSGRTGRAGKEGTAILMFTSSQ 172
+ATDVAARGLD+ NVDL+I+ E P D +T+VHRSGRTGRAGK+G I ++T+ Q
Sbjct: 408 IATDVAARGLDM-NVDLVINSEPPRKMSGMADVDTYVHRSGRTGRAGKKGICITLYTNRQ 466
Query: 173 RRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEK 232
R + +ER +G KF PP ED++++SA + + +N V P +E F A L+ +
Sbjct: 467 RDQLTQIERKIGNKFIMKGPPDQEDLIKASAAKALTEINNVDPSMIEIFQEKAAELLGQM 526
Query: 233 GTD-ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVM--GFLS 289
+ LAAALA ++G ++PP SL++ +VT+ T S F+ A+ +
Sbjct: 527 DPEKCLAAALACITGHTKPPRRTSLMSGVPDYVTVLFT-----SSNFIRAKGYVWNAVNR 581
Query: 290 DVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPG 333
D+ A++I ++ + D GA FDLP A E++ K I G
Sbjct: 582 DIPENFANDIKQLTLTEDS--MGACFDLPIG-ALEIVEKLIEEG 622
>gi|301755882|ref|XP_002913779.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Ailuropoda
melanoleuca]
Length = 739
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 210/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 325 LLFSATCPPWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 384
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 385 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 444
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 445 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 504
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 505 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 564
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 565 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESPEEIQDISCAWKELNRKLSS---NAVS 620
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+I ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 621 QITRMCLLKGN--MGVCFDVPTTESERLQAEWHDSDWILSLPAKLPEIEEYYDGNTSSN 677
>gi|134085663|ref|NP_001076996.1| nucleolar RNA helicase 2 [Bos taurus]
gi|133778115|gb|AAI23649.1| DDX21 protein [Bos taurus]
gi|296472163|tpg|DAA14278.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Bos taurus]
Length = 784
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 155/430 (36%), Positives = 233/430 (54%), Gaps = 39/430 (9%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 373 LLFSATCPYWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 432
Query: 60 TVYAK-GGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S + +++LHGDI Q QRE TL GFR G F VL
Sbjct: 433 RVYSGFQGRTIIFCETKKEAQELSQNVAVRQDAQSLHGDIPQKQREITLKGFRNGDFGVL 492
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 493 VATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQ 552
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 553 VEQKAGIKFKRIGVPSPTEIIKASSKDAIRLLDSVPPTAIGHFKQSAEKLIEEKGAVEAL 612
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN E G+VT+ + M +S + +
Sbjct: 613 AAALAHISG-ATSVDQRSLINSEAGFVTM-----------ILRCSIEMPNISYAWKELKE 660
Query: 298 EIGKIHIIADDRV---------QGAVFDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V QG FD+P E+ K +S T+ P L
Sbjct: 661 QLGE---DIDSKVKGMVFLKGKQGVCFDIPTASVTEVQEKWHDSRRWQLSVATEQPEL-- 715
Query: 348 DGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGG-GSMDR-RGFRSSRSWGSDDEDG 405
+GP + Y F R R G F G R G RG G +R R FR RS G + +
Sbjct: 716 EGP-REGYRNF----RGQREGNRGFR--GQREGNRGARGQRERSRSFRGQRSGGGNKSNR 768
Query: 406 FSSSRGGRSF 415
F + RSF
Sbjct: 769 FQNKGQKRSF 778
>gi|402880683|ref|XP_003903927.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Papio anubis]
Length = 680
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 210/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 266 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 325
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 326 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 385
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 386 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 445
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 446 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 505
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 506 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESLEEIQDVSCAWKELNRKLSS---NAVS 561
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+I ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 562 QITRMCLLKGN--MGVCFDVPTTESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 618
>gi|301755880|ref|XP_002913778.1| PREDICTED: nucleolar RNA helicase 2-like [Ailuropoda melanoleuca]
Length = 794
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 155/426 (36%), Positives = 232/426 (54%), Gaps = 22/426 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 374 LLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 433
Query: 60 TVYAK-GGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S ++ +++LHGDI Q QRE TL GFR G F VL
Sbjct: 434 RVYSGFHGRTIIFCETKKEAQELSQNVSIKQDAQSLHGDIPQKQREITLKGFRNGDFGVL 493
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 494 VATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQHKEEYQLAQ 553
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P +V F +A++LIEEKG +AL
Sbjct: 554 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAVSHFKQSAEKLIEEKGAVEAL 613
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN + G+VT+ L + + + LS+ +
Sbjct: 614 AAALAHISG-ATSVDQRSLINSDAGFVTMILRCSIEMPNISYAWKELKEQLSEDIDSKVK 672
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYG 356
G + + QG FD+P E+ K +S T+ P L +GP G
Sbjct: 673 --GMVFLKGK---QGVCFDVPTAAVTEIQEKWHDSRRWQLSVATEQPEL--EGPREGFRG 725
Query: 357 RFSSRDRFSRG-----GGSRFSRGGARGGARG--GGSMDRRGFRSSRSWGSDDEDGFSSS 409
F + SRG GSRF G R G R G RGFR RS G + + +
Sbjct: 726 -FRGQREGSRGFRGQREGSRFR--GQREGNRSFRGQREGNRGFRGQRSGGGNKSNRSQNK 782
Query: 410 RGGRSF 415
RSF
Sbjct: 783 GQKRSF 788
>gi|397489924|ref|XP_003815961.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Pan paniscus]
Length = 715
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 156/434 (35%), Positives = 235/434 (54%), Gaps = 46/434 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 304 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 363
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 364 RVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVL 423
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 424 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQ 483
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 484 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 543
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN G+VT+ + M +S + +
Sbjct: 544 AAALAHISG-ATSVDQRSLINSNVGFVTM-----------ILQCSIEMPNISYAWKELKE 591
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+P E+ K +S T+ P L
Sbjct: 592 QLGE---EIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEKWHDSRRWQLSVATEQPEL-- 646
Query: 348 DGPSSDNYGRFSSRDRFSRG------GGSRF--SRGGARG--GARGGGSMDRRGFRSSRS 397
+GP + YG F + SRG G RF R G+RG G R GG G +S+RS
Sbjct: 647 EGP-REGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRGQRSGG-----GNKSNRS 700
Query: 398 WGSDDEDGFSSSRG 411
+ FS + G
Sbjct: 701 QNKGQKRSFSKAFG 714
>gi|332834196|ref|XP_003312635.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Pan troglodytes]
Length = 715
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 156/434 (35%), Positives = 235/434 (54%), Gaps = 46/434 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 304 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 363
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 364 RVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVL 423
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 424 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQ 483
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 484 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 543
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN G+VT+ + M +S + +
Sbjct: 544 AAALAHISG-ATSVDQRSLINSNVGFVTM-----------ILQCSIEMPNISYAWKELKE 591
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+P E+ K +S T+ P L
Sbjct: 592 QLGE---EIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEKWHDSRRWQLSVATEQPEL-- 646
Query: 348 DGPSSDNYGRFSSRDRFSRG------GGSRF--SRGGARG--GARGGGSMDRRGFRSSRS 397
+GP + YG F + SRG G RF R G+RG G R GG G +S+RS
Sbjct: 647 EGP-REGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRGQRSGG-----GNKSNRS 700
Query: 398 WGSDDEDGFSSSRG 411
+ FS + G
Sbjct: 701 QNKGQKRSFSKAFG 714
>gi|397489922|ref|XP_003815960.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Pan paniscus]
Length = 783
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 156/434 (35%), Positives = 235/434 (54%), Gaps = 46/434 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 372 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 431
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 432 RVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVL 491
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 492 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQ 551
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 552 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 611
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN G+VT+ + M +S + +
Sbjct: 612 AAALAHISGATS-VDQRSLINSNVGFVTM-----------ILQCSIEMPNISYAWKELKE 659
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+P E+ K +S T+ P L
Sbjct: 660 QLGE---EIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEKWHDSRRWQLSVATEQPEL-- 714
Query: 348 DGPSSDNYGRFSSRDRFSRG------GGSRF--SRGGARG--GARGGGSMDRRGFRSSRS 397
+GP + YG F + SRG G RF R G+RG G R GG G +S+RS
Sbjct: 715 EGP-REGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRGQRSGG-----GNKSNRS 768
Query: 398 WGSDDEDGFSSSRG 411
+ FS + G
Sbjct: 769 QNKGQKRSFSKAFG 782
>gi|395820612|ref|XP_003783657.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Otolemur garnettii]
Length = 737
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 210/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 323 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 382
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 383 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 442
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 443 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 502
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 503 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 562
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 563 AAALAHISGASN-FEPRSLITSDKGFVTMTLESLEEIQDVSCAWKELNRKLSS---NAVS 618
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+I ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 619 QITRMCLLKGN--MGVCFDVPTAESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 675
>gi|359490274|ref|XP_002269873.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Vitis
vinifera]
Length = 711
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 137/353 (38%), Positives = 196/353 (55%), Gaps = 17/353 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNI-DLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WVK++S ++L L DLVGN+ K + ++ + +++++ ++ D+I
Sbjct: 308 LLFSATLPGWVKEISSRFLKPTLKTADLVGNEKMKASTNVRHIVLPCSSSARSQVIPDVI 367
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y+ GG+TI+FT+TK A E++ L + ALHGDI Q QRE TL+GFR GKF LV
Sbjct: 368 RCYSSGGRTIIFTETKDSASELAGLLP---GARALHGDIQQSQREVTLSGFRSGKFMTLV 424
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
AT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A+++F +R + +
Sbjct: 425 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNSGVAVMLF-DPRRSNISKI 483
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA--- 236
ER+ G KFE VS P D+ +S+ + T+ V + F A+ L+ G A
Sbjct: 484 ERESGVKFEHVSAPQPADIAKSAGVEAAGTITQVSDSVIPAFKSAAEELLNTSGLSAVEL 543
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPT-A 295
LA ALA+ SG++ SRSL+ VT+ L + + G L P
Sbjct: 544 LAKALAKASGYTE-IKSRSLLASLDNHVTVLLEA----GKPIYTPSFAYGVLRRFLPEDK 598
Query: 296 ADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITK-LPALQD 347
D I + + AD GAVFD+ E L Q N ++ K LP LQ+
Sbjct: 599 VDSIKGLALTADG--NGAVFDVATEDLDAFLAGQENAANVSLEVLKALPRLQE 649
>gi|348509639|ref|XP_003442355.1| PREDICTED: nucleolar RNA helicase 2-like [Oreochromis niloticus]
Length = 755
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 127/328 (38%), Positives = 199/328 (60%), Gaps = 9/328 (2%)
Query: 1 MLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV ++++KY+ N +IDL+G + +K A ++ AI+ + + ++ D+I
Sbjct: 344 LLFSATCPPWVYEVAKKYMRPNCKHIDLIGKKTQKAATTVEHLAITCHWSQRAAVIGDVI 403
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TIVF +TK++A+E+S+ + ++++LHGDI Q QRE TL GFR G F VL
Sbjct: 404 QVYSGSHGRTIVFCETKKEANELSMNASIKQSTQSLHGDIPQKQREMTLKGFRNGAFEVL 463
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + +R
Sbjct: 464 VATNVAARGLDIPEVDLVVQCSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEDQLRY 523
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E G F V P D+++SS++ V L+ V ++ +F +A++LIEE+G DAL
Sbjct: 524 VENKAGITFRRVGVPTANDIIKSSSKDAVRFLDSVPVAAIGYFRASAEKLIEERGAVDAL 583
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSL+N + G+ T+QL + R++ L + +
Sbjct: 584 AAALAHISG-ATSLEQRSLLNSDAGFSTMQLVCSQEMHNLGYAWRTIKEQLGE---QIEN 639
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKEL 325
I ++ + G FD+P + KE+
Sbjct: 640 HIHRMTFLKGR--TGVCFDVPADKVKEI 665
>gi|410349717|gb|JAA41462.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
Length = 737
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 210/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 323 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 382
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 383 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 442
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 443 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 502
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 503 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 562
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 563 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESLEEIQDVSCAWKELNRKLSS---NAVS 618
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+I ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 619 QITRMCLLKGN--MGVCFDVPTTESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 675
>gi|109089499|ref|XP_001110939.1| PREDICTED: nucleolar RNA helicase 2-like isoform 3 [Macaca mulatta]
Length = 783
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 156/434 (35%), Positives = 235/434 (54%), Gaps = 46/434 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 372 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 431
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 432 RVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVL 491
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 492 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQ 551
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 552 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 611
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN G+VT+ + M +S + +
Sbjct: 612 AAALAHISG-ATSVDQRSLINSNVGFVTM-----------ILQCSIEMPNISYAWKELKE 659
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+P E+ K +S T+ P L
Sbjct: 660 QLGE---EIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEKWHDSRRWQLSVATEQPEL-- 714
Query: 348 DGPSSDNYGRFSSRDRFSRG------GGSRF--SRGGARG--GARGGGSMDRRGFRSSRS 397
+GP + YG F + SRG G RF R G+RG G R GG G +S+RS
Sbjct: 715 EGP-REGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRGQRSGG-----GNKSNRS 768
Query: 398 WGSDDEDGFSSSRG 411
+ FS + G
Sbjct: 769 QNKGQKRSFSKAFG 782
>gi|380817914|gb|AFE80831.1| nucleolar RNA helicase 2 [Macaca mulatta]
gi|383414353|gb|AFH30390.1| nucleolar RNA helicase 2 [Macaca mulatta]
gi|384943498|gb|AFI35354.1| nucleolar RNA helicase 2 [Macaca mulatta]
Length = 783
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 156/434 (35%), Positives = 235/434 (54%), Gaps = 46/434 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 372 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 431
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 432 RVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVL 491
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 492 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQ 551
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 552 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 611
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN G+VT+ + M +S + +
Sbjct: 612 AAALAHISG-ATSVDQRSLINSNVGFVTM-----------ILQCSIEMPNISYAWKELKE 659
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+P E+ K +S T+ P L
Sbjct: 660 QLGE---EIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEKWHDSRRWQLSVATEQPEL-- 714
Query: 348 DGPSSDNYGRFSSRDRFSRG------GGSRF--SRGGARG--GARGGGSMDRRGFRSSRS 397
+GP + YG F + SRG G RF R G+RG G R GG G +S+RS
Sbjct: 715 EGP-REGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRGQRSGG-----GNKSNRS 768
Query: 398 WGSDDEDGFSSSRG 411
+ FS + G
Sbjct: 769 QNKGQKRSFSKAFG 782
>gi|332218194|ref|XP_003258244.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Nomascus leucogenys]
Length = 715
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 156/434 (35%), Positives = 235/434 (54%), Gaps = 46/434 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 304 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 363
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 364 RVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVL 423
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 424 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQ 483
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 484 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 543
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN G+VT+ + M +S + +
Sbjct: 544 AAALAHISG-ATSVDQRSLINSNVGFVTM-----------ILQCSIEMPNISYAWKELKE 591
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+P E+ K +S T+ P L
Sbjct: 592 QLGE---EIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEKWHDSRRWQLSVATEQPEL-- 646
Query: 348 DGPSSDNYGRFSSRDRFSRG------GGSRF--SRGGARG--GARGGGSMDRRGFRSSRS 397
+GP + YG F + SRG G RF R G+RG G R GG G +S+RS
Sbjct: 647 EGP-REGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRGQRSGG-----GNKSNRS 700
Query: 398 WGSDDEDGFSSSRG 411
+ FS + G
Sbjct: 701 QNKGQKRSFSKAFG 714
>gi|114630811|ref|XP_507825.2| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Pan troglodytes]
gi|410222082|gb|JAA08260.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410252906|gb|JAA14420.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410252908|gb|JAA14421.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410252910|gb|JAA14422.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410292262|gb|JAA24731.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
Length = 783
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 156/434 (35%), Positives = 235/434 (54%), Gaps = 46/434 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 372 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 431
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 432 RVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVL 491
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 492 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQ 551
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 552 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 611
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN G+VT+ + M +S + +
Sbjct: 612 AAALAHISGATS-VDQRSLINSNVGFVTM-----------ILQCSIEMPNISYAWKELKE 659
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+P E+ K +S T+ P L
Sbjct: 660 QLGE---EIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEKWHDSRRWQLSVATEQPEL-- 714
Query: 348 DGPSSDNYGRFSSRDRFSRG------GGSRF--SRGGARG--GARGGGSMDRRGFRSSRS 397
+GP + YG F + SRG G RF R G+RG G R GG G +S+RS
Sbjct: 715 EGP-REGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRGQRSGG-----GNKSNRS 768
Query: 398 WGSDDEDGFSSSRG 411
+ FS + G
Sbjct: 769 QNKGQKRSFSKAFG 782
>gi|379317177|ref|NP_001243839.1| nucleolar RNA helicase 2 isoform 2 [Homo sapiens]
gi|51476855|emb|CAH18395.1| hypothetical protein [Homo sapiens]
gi|119574692|gb|EAW54307.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_c [Homo
sapiens]
gi|123993911|gb|ABM84557.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
gi|124000685|gb|ABM87851.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
gi|189054973|dbj|BAG37957.1| unnamed protein product [Homo sapiens]
Length = 715
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 156/434 (35%), Positives = 235/434 (54%), Gaps = 46/434 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 304 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 363
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 364 RVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVL 423
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 424 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQ 483
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 484 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 543
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN G+VT+ + M +S + +
Sbjct: 544 AAALAHISG-ATSVDQRSLINSNVGFVTM-----------ILQCSIEMPNISYAWKELKE 591
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+P E+ K +S T+ P L
Sbjct: 592 QLGE---EIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEKWHDSRRWQLSVATEQPEL-- 646
Query: 348 DGPSSDNYGRFSSRDRFSRG------GGSRF--SRGGARG--GARGGGSMDRRGFRSSRS 397
+GP + YG F + SRG G RF R G+RG G R GG G +S+RS
Sbjct: 647 EGP-REGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRGQRSGG-----GNKSNRS 700
Query: 398 WGSDDEDGFSSSRG 411
+ FS + G
Sbjct: 701 QNKGQKRSFSKAFG 714
>gi|50659095|ref|NP_004719.2| nucleolar RNA helicase 2 isoform 1 [Homo sapiens]
gi|76803555|sp|Q9NR30.5|DDX21_HUMAN RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
protein 21; AltName: Full=Gu-alpha; AltName:
Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
RNA helicase II; AltName: Full=RH II/Gu
gi|31455230|gb|AAH08071.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapiens]
gi|119574691|gb|EAW54306.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Homo
sapiens]
gi|261858100|dbj|BAI45572.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
Length = 783
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 156/434 (35%), Positives = 235/434 (54%), Gaps = 46/434 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 372 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 431
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 432 RVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVL 491
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 492 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQ 551
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 552 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 611
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN G+VT+ + M +S + +
Sbjct: 612 AAALAHISGATS-VDQRSLINSNVGFVTM-----------ILQCSIEMPNISYAWKELKE 659
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+P E+ K +S T+ P L
Sbjct: 660 QLGE---EIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEKWHDSRRWQLSVATEQPEL-- 714
Query: 348 DGPSSDNYGRFSSRDRFSRG------GGSRF--SRGGARG--GARGGGSMDRRGFRSSRS 397
+GP + YG F + SRG G RF R G+RG G R GG G +S+RS
Sbjct: 715 EGP-REGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRGQRSGG-----GNKSNRS 768
Query: 398 WGSDDEDGFSSSRG 411
+ FS + G
Sbjct: 769 QNKGQKRSFSKAFG 782
>gi|11890755|gb|AAF78930.2|AAF78930 RNA helicase II/Gu protein [Homo sapiens]
Length = 715
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 156/434 (35%), Positives = 235/434 (54%), Gaps = 46/434 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 304 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 363
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 364 RVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVL 423
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 424 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQ 483
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 484 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 543
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN G+VT+ + M +S + +
Sbjct: 544 AAALAHISG-ATSVDQRSLINSNVGFVTM-----------ILQCSIEMPNISYAWKELKE 591
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+P E+ K +S T+ P L
Sbjct: 592 QLGE---EIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEKWHDSRRWQLSVATEQPEL-- 646
Query: 348 DGPSSDNYGRFSSRDRFSRG------GGSRF--SRGGARG--GARGGGSMDRRGFRSSRS 397
+GP + YG F + SRG G RF R G+RG G R GG G +S+RS
Sbjct: 647 EGP-REGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRGQRSGG-----GNKSNRS 700
Query: 398 WGSDDEDGFSSSRG 411
+ FS + G
Sbjct: 701 QNKGQKRSFSKAFG 714
>gi|167515852|ref|XP_001742267.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778891|gb|EDQ92505.1| predicted protein [Monosiga brevicollis MX1]
Length = 591
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 126/350 (36%), Positives = 199/350 (56%), Gaps = 11/350 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP ++ + Y+ N + +D VG+ + ++G+ AI T +R +++D++
Sbjct: 183 ILFSATMPDFILSTVKNYMPNHVTVDTVGSSRNRTSKGVDHLAIKCPWTERRAVIADVVQ 242
Query: 61 VYAKG-GKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+Y+ G+TI+FTQTK+DA+E++L + LHGDI Q QRE +L FR GK LV
Sbjct: 243 MYSGAHGRTIIFTQTKKDANELALETDLRQEVQVLHGDIPQKQREMSLQAFRDGKVRCLV 302
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDIP VDL++ E P D E+++HRSGRTGRAG+ GT I + +Q +R +
Sbjct: 303 ATDVAARGLDIPEVDLVVQCEPPKDVESYIHRSGRTGRAGRTGTCICFYKPNQEDAMRYV 362
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
ER G F + P EDV+++SA +L ++ + F A+ LIEE+G +A A
Sbjct: 363 ERRAGISFRRIGAPQPEDVIKASARDAFRSLEAINDSVLAHFKDAARELIEERGAEAALA 422
Query: 240 ALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAF-SRGFMSARSVMGFLSDVYPT-AAD 297
A + +RSL++ + TL + ++ ++GF V + +P A +
Sbjct: 423 AALAHISGATEIKTRSLLSSMADYTTLHIKVETEIRTKGF-----VWTLIRKYFPEDAHN 477
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNK-QIPPGNTISKITKLPALQ 346
EI + + D QG+VFD+P ++ ++ P T+ +LP L+
Sbjct: 478 EIKGLRLQKDK--QGSVFDVPTKMVDGIMAAWNDSPTVTMEVCKELPELE 525
>gi|297686801|ref|XP_002820927.1| PREDICTED: nucleolar RNA helicase 2 [Pongo abelii]
Length = 783
Score = 214 bits (545), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 156/434 (35%), Positives = 235/434 (54%), Gaps = 46/434 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 372 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 431
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 432 RVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVL 491
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 492 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQ 551
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 552 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 611
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN G+VT+ + M +S + +
Sbjct: 612 AAALAHISG-ATSVDQRSLINSNVGFVTM-----------ILQCSIEMPNISYAWKELKE 659
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+P E+ K +S T+ P L
Sbjct: 660 QLGE---EIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEKWHDSRRWQLSVATEQPEL-- 714
Query: 348 DGPSSDNYGRFSSRDRFSRG------GGSRF--SRGGARG--GARGGGSMDRRGFRSSRS 397
+GP + YG F + SRG G RF R G+RG G R GG G +S+RS
Sbjct: 715 EGP-REGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRGQRSGG-----GNKSNRS 768
Query: 398 WGSDDEDGFSSSRG 411
+ FS + G
Sbjct: 769 QNKGQKRSFSKAFG 782
>gi|344237687|gb|EGV93790.1| ATP-dependent RNA helicase DDX50 [Cricetulus griseus]
Length = 670
Score = 214 bits (545), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 135/359 (37%), Positives = 210/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 312 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 371
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 372 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 431
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G + + +R +R
Sbjct: 432 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERGQLRY 491
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 492 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 551
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 552 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKELNRKLSS---NAVS 607
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
++ ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 608 QVTRMCLLKGN--MGVCFDVPTSESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 664
>gi|114630813|ref|XP_507824.2| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pan
troglodytes]
gi|397489926|ref|XP_003815962.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pan
paniscus]
gi|410227544|gb|JAA10991.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
gi|410259742|gb|JAA17837.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
gi|410288618|gb|JAA22909.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
Length = 737
Score = 214 bits (545), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 210/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 323 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 382
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 383 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 442
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 443 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 502
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 503 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 562
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 563 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESLEEIQDVSCAWKELNRKLSS---NAVS 618
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+I ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 619 QITRMCLLKGN--MGVCFDVPTTESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 675
>gi|340502033|gb|EGR28753.1| hypothetical protein IMG5_169500 [Ichthyophthirius multifiliis]
Length = 727
Score = 214 bits (545), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 136/359 (37%), Positives = 197/359 (54%), Gaps = 16/359 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
+LFSAT+PSWV ++SRKYL N + IDLV N D K ++G+ AI+ + + D+
Sbjct: 257 LLFSATVPSWVHEISRKYLQEQNIVMIDLVRNNDNKTSQGVTHLAINCPFYQRTEAIGDV 316
Query: 59 ITVYAKGG--KTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFT 116
I Y G + I+F +TK +A+E+ L + LHGDI Q QRE T GFR+GKF
Sbjct: 317 ILCYGGGAHSRVIIFCETKNEANEIMLKANIKQDLQVLHGDIPQKQREITFQGFREGKFK 376
Query: 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 176
LVAT+VA+RGLDIP VDLI+ E P + +T++HR+GRTGRAGK G I FT Q +
Sbjct: 377 CLVATNVASRGLDIPEVDLIVQLEPPKELDTYIHRAGRTGRAGKTGVCITFFTKKQVGLI 436
Query: 177 RSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TD 235
+E+ K + V P D++++S + L V+ E V F ++ LI+E G +
Sbjct: 437 ERIEKKCHIKMKIVGAPQPGDIVKASQTDIKKNLKTVNQEVVSMFQQVSEDLIQEFGPQE 496
Query: 236 ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTA 295
AL+ ALA +SG+ RSL+ +G+ T + + RG + + D+
Sbjct: 497 ALSRALAYISGYIEGVKQRSLLCCLEGYCTY-IVKAPHEIRGLGYIWNWLKSNFDI--EV 553
Query: 296 ADEIGKIHIIADDRVQGAVFDLPE-EIAK-ELLNKQIPPGNT----ISKITKLPALQDD 348
D + + AD GAVFD+ E +I K E + I G + K T +P L+DD
Sbjct: 554 VDRVKGMKKCADSL--GAVFDVAESDIVKFEEYIQNIADGAKKGLLLEKATVMPKLEDD 610
>gi|332218192|ref|XP_003258243.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Nomascus leucogenys]
Length = 783
Score = 214 bits (545), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 156/434 (35%), Positives = 235/434 (54%), Gaps = 46/434 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 372 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 431
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 432 RVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVL 491
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 492 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQ 551
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 552 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 611
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN G+VT+ + M +S + +
Sbjct: 612 AAALAHISGATS-VDQRSLINSNVGFVTM-----------ILQCSIEMPNISYAWKELKE 659
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+P E+ K +S T+ P L
Sbjct: 660 QLGE---EIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEKWHDSRRWQLSVATEQPEL-- 714
Query: 348 DGPSSDNYGRFSSRDRFSRG------GGSRF--SRGGARG--GARGGGSMDRRGFRSSRS 397
+GP + YG F + SRG G RF R G+RG G R GG G +S+RS
Sbjct: 715 EGP-REGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRGQRSGG-----GNKSNRS 768
Query: 398 WGSDDEDGFSSSRG 411
+ FS + G
Sbjct: 769 QNKGQKRSFSKAFG 782
>gi|426364958|ref|XP_004049558.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Gorilla gorilla
gorilla]
Length = 715
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 155/434 (35%), Positives = 235/434 (54%), Gaps = 46/434 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 304 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 363
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 364 RVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVL 423
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 424 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQ 483
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 484 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 543
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN G+VT+ + M +S + +
Sbjct: 544 AAALAHISG-ATSVDQRSLINSNVGFVTM-----------ILQCSIEMPNISYAWKELKE 591
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G + FD+P E+ K +S T+ P L
Sbjct: 592 QLGE---EIDSKVKGMIFLKGKLGVCFDVPTASVTEIQEKWHDSRRWQLSVATEQPEL-- 646
Query: 348 DGPSSDNYGRFSSRDRFSRG------GGSRF--SRGGARG--GARGGGSMDRRGFRSSRS 397
+GP + YG F + SRG G RF R G+RG G R GG G +S+RS
Sbjct: 647 EGP-REGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRGQRSGG-----GNKSNRS 700
Query: 398 WGSDDEDGFSSSRG 411
+ FS + G
Sbjct: 701 QNKGQKRSFSKAFG 714
>gi|1230564|gb|AAB02546.1| Gu protein, partial [Homo sapiens]
Length = 801
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 156/434 (35%), Positives = 235/434 (54%), Gaps = 46/434 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 390 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 449
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 450 RVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVL 509
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 510 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQ 569
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 570 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 629
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN G+VT+ + M +S + +
Sbjct: 630 AAALAHISGATS-VDQRSLINSNVGFVTM-----------ILQCSIEMPNISYAWKELKE 677
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+P E+ K +S T+ P L
Sbjct: 678 QLGE---EIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEKWHDSRRWQLSVATEQPEL-- 732
Query: 348 DGPSSDNYGRFSSRDRFSRG------GGSRF--SRGGARG--GARGGGSMDRRGFRSSRS 397
+GP + YG F + SRG G RF R G+RG G R GG G +S+RS
Sbjct: 733 EGP-REGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRGQRSGG-----GNKSNRS 786
Query: 398 WGSDDEDGFSSSRG 411
+ FS + G
Sbjct: 787 QNKGQKRSFSKAFG 800
>gi|384475931|ref|NP_001245111.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
gi|296220521|ref|XP_002756344.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Callithrix
jacchus]
gi|380816428|gb|AFE80088.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
gi|383421495|gb|AFH33961.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
gi|384949360|gb|AFI38285.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
Length = 737
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 210/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 323 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 382
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 383 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 442
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 443 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 502
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 503 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 562
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 563 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESLEEIQDVSCAWKELNRKLSS---NAVS 618
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+I ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 619 QITRMCLLKGN--MGVCFDVPTTESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 675
>gi|199561314|ref|NP_001013216.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Rattus norvegicus]
Length = 734
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 135/359 (37%), Positives = 210/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 320 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 379
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 380 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 439
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G + + +R +R
Sbjct: 440 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERGQLRY 499
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 500 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 559
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 560 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKELNRKLSS---NAVS 615
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
++ ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 616 QVTRMCLLKGN--MGVCFDVPTSESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 672
>gi|426364956|ref|XP_004049557.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Gorilla gorilla
gorilla]
Length = 783
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 155/434 (35%), Positives = 235/434 (54%), Gaps = 46/434 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 372 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 431
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 432 RVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVL 491
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 492 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQ 551
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 552 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 611
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN G+VT+ + M +S + +
Sbjct: 612 AAALAHISGATS-VDQRSLINSNVGFVTM-----------ILQCSIEMPNISYAWKELKE 659
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G + FD+P E+ K +S T+ P L
Sbjct: 660 QLGE---EIDSKVKGMIFLKGKLGVCFDVPTASVTEIQEKWHDSRRWQLSVATEQPEL-- 714
Query: 348 DGPSSDNYGRFSSRDRFSRG------GGSRF--SRGGARG--GARGGGSMDRRGFRSSRS 397
+GP + YG F + SRG G RF R G+RG G R GG G +S+RS
Sbjct: 715 EGP-REGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRGQRSGG-----GNKSNRS 768
Query: 398 WGSDDEDGFSSSRG 411
+ FS + G
Sbjct: 769 QNKGQKRSFSKAFG 782
>gi|348672301|gb|EGZ12121.1| hypothetical protein PHYSODRAFT_547952 [Phytophthora sojae]
Length = 654
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 129/359 (35%), Positives = 199/359 (55%), Gaps = 33/359 (9%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+++SAT P WV +++K+L P++IDLVG++D ++ + AI+ + +L +++
Sbjct: 233 VMWSATFPKWVSSMAKKFLKEPVSIDLVGDEDNQVPATVAHKAINAPVRDRIQVLENVLR 292
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
++A G+T+VFT+TK++ADE++ +L A ALHGD+SQ R T++GFR G LV
Sbjct: 293 LHAHDGQTLVFTETKQEADEIANSLPGQDA-RALHGDLSQGMRTSTMSGFRNGHVKTLVC 351
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TD+AARGLDI NV+L++ Y LP+D E+FVHR+GRTGRAG+ GT I+ F V E
Sbjct: 352 TDIAARGLDIANVELVVQYRLPSDKESFVHRAGRTGRAGRSGTNIVFFDGRDASDVLDFE 411
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
R KF +PP E ++E + E V L + + + F AQ +IE++G L+AA
Sbjct: 412 RRYKFKFAHAAPPHPEQMIEGALEDVNKQLTSLPKANAQLFDEAAQAMIEQQGPGVLSAA 471
Query: 241 LAQLSGF-SRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLS-------DVY 292
LA L GF S+ ++ S++ T+Q+ G +AR + LS D+Y
Sbjct: 472 LALLCGFDSKKLTTLSMLTGRFRMQTVQV-------EGVQNARELNRLLSSFMDDRVDIY 524
Query: 293 PTAADEIGKIHIIADDRVQGAVFDLPE---EIAKELLNKQIPPGNTISKITKLPALQDD 348
P GK+ VFD+P+ E +E L T++ + P L D
Sbjct: 525 PVDG---GKL-----------VFDIPQGKLESLQEHLTASSDDEVTVTAAVEFPRLLMD 569
>gi|332218196|ref|XP_003258245.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Nomascus
leucogenys]
Length = 737
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 210/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 323 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 382
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 383 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 442
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 443 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 502
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 503 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 562
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 563 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESLEEIQDVSCAWKELNRKLSS---NAVS 618
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+I ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 619 QITRMCLLKGN--MGVCFDVPTTESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 675
>gi|13129006|ref|NP_076950.1| ATP-dependent RNA helicase DDX50 [Homo sapiens]
gi|297686803|ref|XP_002820928.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pongo
abelii]
gi|55976580|sp|Q9BQ39.1|DDX50_HUMAN RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD
box protein 50; AltName: Full=Gu-beta; AltName:
Full=Nucleolar protein Gu2
gi|13540304|gb|AAK29402.1|AF334103_1 nucleolar protein GU2 [Homo sapiens]
gi|12653021|gb|AAH00272.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
gi|119574689|gb|EAW54304.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
gi|123983644|gb|ABM83473.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct]
gi|123998165|gb|ABM86684.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct]
Length = 737
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 210/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 323 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 382
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 383 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 442
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 443 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 502
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 503 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 562
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 563 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESLEEIQDVSCAWKELNRKLSS---NAVS 618
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+I ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 619 QITRMCLLKGN--MGVCFDVPTTESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 675
>gi|327277992|ref|XP_003223747.1| PREDICTED: nucleolar RNA helicase 2-like [Anolis carolinensis]
Length = 628
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 143/398 (35%), Positives = 222/398 (55%), Gaps = 14/398 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + IDL+G + +K A ++ AI + + ++ D++
Sbjct: 234 LLFSATCPHWVYDVAKKYMKSKYEQIDLIGKKTKKTAMTVEHLAIECHWSQRAAVIGDVL 293
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E++L + +++LHGDI Q QRE TL GFR G F VL
Sbjct: 294 QVYSGSHGRTIIFCETKKEATELALNASIKQDAQSLHGDIPQKQREVTLKGFRNGAFGVL 353
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + ++
Sbjct: 354 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGMCICFYQRKEDYQLKQ 413
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D++++S++ + +L+ V P ++++F +A+RLIEEKG +AL
Sbjct: 414 VEQKAGITFKRVGVPTATDIIKASSKDAIKSLDSVPPSAIDYFRQSAERLIEEKGAVEAL 473
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSL+N + G+VT+ L + R G +
Sbjct: 474 AAALAHISG-ATSIEQRSLLNSDAGYVTMMLQCSVEMQSIGYAWR---GLKEQLGEDIDS 529
Query: 298 EIGKIHIIADDRVQGAVFDLP-EEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYG 356
++ ++ + G FD+P E+ K Q +S T+LP L++ S G
Sbjct: 530 KVFRMRFLKGK--TGVCFDIPVAELPKLQQTWQDSRRWQLSVATELPELEE---SLKEPG 584
Query: 357 RFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRS 394
R + F R R G RGG S R FR+
Sbjct: 585 RGGGKPDF-RNRRGGGGGSHFRNGRRGGDSNRRDRFRN 621
>gi|410925948|ref|XP_003976441.1| PREDICTED: nucleolar RNA helicase 2-like [Takifugu rubripes]
Length = 713
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 127/328 (38%), Positives = 198/328 (60%), Gaps = 9/328 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ ++DL+G + +K A ++ AI+ + + ++ D+I
Sbjct: 316 LLFSATCPPWVYDVAKKYMRPKCKHVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVI 375
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TIVF +TK++A+E+S+ + ++++LHGDI Q QRE TL GFR G F VL
Sbjct: 376 QVYSGSHGRTIVFCETKKEANELSMNASIKQSTQSLHGDIPQKQRETTLKGFRNGSFEVL 435
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + +R
Sbjct: 436 VATNVAARGLDIPEVDLVVQCSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEDQLRY 495
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E G F V P D+++SS++ V L+ + ++ +F +A++LIEE+G DAL
Sbjct: 496 VENKAGITFRRVGVPTANDIIKSSSKDAVRFLDSIPVAAIGYFRASAEKLIEERGAVDAL 555
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSL+N + G+ TLQLT + +S+ L + T
Sbjct: 556 AAALAHISG-ATALEQRSLLNSDAGYTTLQLTCSLEMHNIGYAWKSLKEQLGEEIET--- 611
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKEL 325
I ++ + G FD+P + KE+
Sbjct: 612 HIHRMTFLKGR--MGVCFDVPADKVKEI 637
>gi|320164192|gb|EFW41091.1| nucleolar RNA helicase 2 [Capsaspora owczarzaki ATCC 30864]
Length = 793
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 142/358 (39%), Positives = 200/358 (55%), Gaps = 19/358 (5%)
Query: 1 MLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSATMP+WVK L++KY ++ + +DLV D++ + I+ AI + + D++
Sbjct: 378 LLFSATMPTWVKALTKKYQREDKVMVDLVSGTDQQTSTTIQHLAIRCPWQERANAIGDVV 437
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASE--ALHGDISQHQRERTLNGFRQGKFT 116
VY+ G+ +VF TK +A++ LAL IA E LHGDI+Q QRE TL GFR GKF
Sbjct: 438 RVYSGSHGRCMVFASTKEEAND--LALNGRIAGETHVLHGDIAQKQREITLAGFRSGKFR 495
Query: 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 176
LVATDVAARGLDIP V+L+I E P D ET++HR+GRTGRAGK GT IL + Q V
Sbjct: 496 CLVATDVAARGLDIPEVELVIQTEPPIDVETYIHRAGRTGRAGKSGTCILFYKPQQESLV 555
Query: 177 RSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TD 235
R +E F+ + PP +D++ +SA +L V P F A+ +I G D
Sbjct: 556 RRIEGKARMAFKRIGPPQPQDIVSASANDAARSLAKVSPAVYPLFHQAAEEVIARAGAVD 615
Query: 236 ALAAALAQLSGFSRPPSSRSLINHEQGWVT--LQLTRDSAFSRGFMSARSVMGFLSDVYP 293
AL+AALA +SG +RSL++ +G+VT +QLT D RG S++ + P
Sbjct: 616 ALSAALAVISGVFE-IKTRSLLSSMEGYVTFCIQLTYD---VRGPSFFWSIID--RHLPP 669
Query: 294 TAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQI-PPGNTISKITKLPAL-QDDG 349
+ + + D GA FD P ++ + + P I T LP L + DG
Sbjct: 670 NVRPALRGMRLFKDH--TGAAFDCPSDVVDTIKEHWVDQPTTKIYVATTLPDLVETDG 725
>gi|149038677|gb|EDL92966.1| rCG22008, isoform CRA_c [Rattus norvegicus]
Length = 638
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 152/431 (35%), Positives = 231/431 (53%), Gaps = 37/431 (8%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 224 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVI 283
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK+DA E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 284 RVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVL 343
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 344 VATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQ 403
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 404 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAIGHFKQSAEKLIEEKGAVEAL 463
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN + G+VT+ + M +S + +
Sbjct: 464 AAALAHISG-ATSVDQRSLINSQAGFVTM-----------ILRCSVEMPNISYAWKELKE 511
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+ E E+ K ++ T+ P L
Sbjct: 512 QLGE---SIDAKVKGMVFLKGKLGVCFDVRTEAVTEIKEKWHDSRRWQLTVATEQPEL-- 566
Query: 348 DGPSSDNYGRFSSRD------RFSRGGGSRFSRGGARGGARG-GGSMDRRGFRSSRSWGS 400
+GP G RD R RGG F G RGG+R G G +S+RS
Sbjct: 567 EGPPEGYRGGRGQRDGSRGSFRGQRGGSRNFRGQGQRGGSRNFRGQRPGGGNKSNRSPNK 626
Query: 401 DDEDGFSSSRG 411
+ FS + G
Sbjct: 627 GQKRSFSKAFG 637
>gi|338716828|ref|XP_001503679.3| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Equus
caballus]
Length = 739
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 209/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 324 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 383
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 384 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 443
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 444 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 503
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 504 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 563
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 564 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESPEEIQDVNSAWKELNRKLSS---NAVS 619
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+I ++ ++ + G FD+P ++ L + +S KLP +++ DG S N
Sbjct: 620 QITRMCLLKGN--MGVCFDVPTTESERLQAEWHDSDWILSVPAKLPEIEEYYDGNISSN 676
>gi|26334341|dbj|BAC30888.1| unnamed protein product [Mus musculus]
Length = 669
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 135/359 (37%), Positives = 209/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 255 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 314
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 315 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 374
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G + + +R +R
Sbjct: 375 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERGQLRY 434
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 435 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 494
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 495 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKELNRKLSS---NAVS 550
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+ ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 551 HVTRMCLLKGN--MGVCFDVPTSESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 607
>gi|348575872|ref|XP_003473712.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Cavia porcellus]
Length = 735
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 135/358 (37%), Positives = 210/358 (58%), Gaps = 11/358 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 322 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 381
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 382 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 441
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 442 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 501
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 502 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 561
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS
Sbjct: 562 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESSEEIQDVSCAWKELNRKLSS---NTVS 617
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSD 353
+I ++ ++ + G FD+P +++L + +S KLP +++ DG +S+
Sbjct: 618 QITRMCLLKGN--MGVCFDVPTTESEKLQAEWHDSDWILSVPAKLPEIEEYYDGNTSN 673
>gi|296084100|emb|CBI24488.3| unnamed protein product [Vitis vinifera]
Length = 547
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 137/353 (38%), Positives = 196/353 (55%), Gaps = 17/353 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNI-DLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WVK++S ++L L DLVGN+ K + ++ + +++++ ++ D+I
Sbjct: 161 LLFSATLPGWVKEISSRFLKPTLKTADLVGNEKMKASTNVRHIVLPCSSSARSQVIPDVI 220
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y+ GG+TI+FT+TK A E++ L + ALHGDI Q QRE TL+GFR GKF LV
Sbjct: 221 RCYSSGGRTIIFTETKDSASELAGLLP---GARALHGDIQQSQREVTLSGFRSGKFMTLV 277
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
AT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A+++F +R + +
Sbjct: 278 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNSGVAVMLF-DPRRSNISKI 336
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA--- 236
ER+ G KFE VS P D+ +S+ + T+ V + F A+ L+ G A
Sbjct: 337 ERESGVKFEHVSAPQPADIAKSAGVEAAGTITQVSDSVIPAFKSAAEELLNTSGLSAVEL 396
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPT-A 295
LA ALA+ SG++ SRSL+ VT+ L + + G L P
Sbjct: 397 LAKALAKASGYTE-IKSRSLLASLDNHVTVLLEA----GKPIYTPSFAYGVLRRFLPEDK 451
Query: 296 ADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITK-LPALQD 347
D I + + AD GAVFD+ E L Q N ++ K LP LQ+
Sbjct: 452 VDSIKGLALTADG--NGAVFDVATEDLDAFLAGQENAANVSLEVLKALPRLQE 502
>gi|410975245|ref|XP_003994044.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Felis catus]
gi|410975247|ref|XP_003994045.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Felis catus]
Length = 712
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 153/423 (36%), Positives = 234/423 (55%), Gaps = 25/423 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 301 LLFSATCPHWVYNVAKKYMRSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 360
Query: 60 TVYAK-GGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S ++ +++LHGDI Q QRE TL GFR G F VL
Sbjct: 361 RVYSGFHGRTIIFCETKKEAQELSQNVSIKQDAQSLHGDIPQKQREITLKGFRNGDFGVL 420
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 421 VATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQHKEEYQLAQ 480
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 481 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAIGHFKQSAEKLIEEKGAVEAL 540
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN + G+VT+ L R + ++ ++ +
Sbjct: 541 AAALAHISG-ATSVDQRSLINSDAGFVTMIL-------RCSIEMPNISYAWKELKEQLGE 592
Query: 298 EI-GKIH-IIADDRVQGAVFDLPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDN 354
EI K+ ++ QG FD+P E+ K +S T+ P L +GP +
Sbjct: 593 EIDSKVKGMVFLKGKQGVCFDVPTAAVTEIQEKWHDSRRWQLSVATEQPEL--EGP-REG 649
Query: 355 YGRFSSRDRFSRGGGSRFSRGGARG--GARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGG 412
Y F + SR G R R G R G R G R FR RS G + + F +
Sbjct: 650 YRGFRGQREGSR--GFRGQREGNRSFRGQREGN----RSFRGQRSGGGNKSNRFQNKGQK 703
Query: 413 RSF 415
RSF
Sbjct: 704 RSF 706
>gi|60551791|gb|AAH90996.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Mus musculus]
Length = 734
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 135/359 (37%), Positives = 209/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 320 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 379
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 380 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 439
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G + + +R +R
Sbjct: 440 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERGQLRY 499
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 500 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 559
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 560 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKELNRKLSS---NAVS 615
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+ ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 616 HVTRMCLLKGN--MGVCFDVPTSESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 672
>gi|16716475|ref|NP_444413.1| ATP-dependent RNA helicase DDX50 [Mus musculus]
gi|55976576|sp|Q99MJ9.1|DDX50_MOUSE RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD
box protein 50; AltName: Full=Gu-beta; AltName:
Full=Nucleolar protein Gu2
gi|13540306|gb|AAK29403.1|AF334104_1 nucleolar protein GU2 [Mus musculus]
Length = 734
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 135/359 (37%), Positives = 209/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 320 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 379
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 380 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 439
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G + + +R +R
Sbjct: 440 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERGQLRY 499
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 500 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 559
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 560 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKELNRKLSS---NAVS 615
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+ ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 616 HVTRMCLLKGN--MGVCFDVPTSESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 672
>gi|431904164|gb|ELK09586.1| ATP-dependent RNA helicase DDX50 [Pteropus alecto]
Length = 738
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 136/359 (37%), Positives = 209/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ +DLVG +K A ++ AI + + ++ D++
Sbjct: 324 LLFSATCPQWVYKVAKKYMKPRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 383
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 384 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 443
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 444 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 503
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 504 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 563
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + L+ A
Sbjct: 564 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKELNRKLNS---NAVS 619
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+I ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 620 QITRMFLLKGN--MGVCFDVPTTESESLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 676
>gi|328774195|gb|EGF84232.1| hypothetical protein BATDEDRAFT_84954 [Batrachochytrium
dendrobatidis JAM81]
Length = 764
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/282 (38%), Positives = 179/282 (63%), Gaps = 8/282 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSATMP W+K+ KY+ N + +DL+G +K + +K YAI++ ++ +L D++
Sbjct: 337 LLFSATMPVWIKQAVSKYMKPNKVTLDLIGTDKQKTSATVKHYAIASHWQNRSALLGDIV 396
Query: 60 TVYAKGG--KTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFT 116
+Y +GG +TI+F +TK +A+E+++ + + ++ LHGDI Q QRE T+ GFR+GKFT
Sbjct: 397 AIYGRGGAGRTIIFVETKGEANELAMNDKLVTMGTQVLHGDIQQKQREVTMQGFREGKFT 456
Query: 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 176
L+ T+V ARG+DIP VDL+I+ E P+D E+++HRSGRTGRAGK G + + +Q +
Sbjct: 457 SLITTNVCARGVDIPEVDLVINCEPPSDVESYIHRSGRTGRAGKSGICVTFYKPNQEYAL 516
Query: 177 RSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESV-EFFTPTAQRLIEEKGTD 235
+++ R G F + P +D++ + A + T+ E V E+FT A ++E D
Sbjct: 517 QNIARHAGVNFIKIGAPQPKDIVAARASDTLETVKTDLDERVLEYFTNCAGDILEHFQGD 576
Query: 236 ---ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAF 274
AL+A LA L ++P ++RS+++ +G++TL T DS
Sbjct: 577 AIKALSATLAVLCNTTKPLATRSILSANEGFITLLFTVDSPI 618
>gi|291404258|ref|XP_002718495.1| PREDICTED: nucleolar protein GU2 [Oryctolagus cuniculus]
Length = 735
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 138/360 (38%), Positives = 211/360 (58%), Gaps = 13/360 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 321 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 380
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 381 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 440
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 441 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 500
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 501 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 560
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 561 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESPEEIQDVSSAWKELNRKLSS---NAVS 616
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKI-TKLPALQD--DGPSSDN 354
++ ++ ++ + G FD+P I E L + + I + KLP +++ DG +S N
Sbjct: 617 QVTRMCLLKGN--MGVCFDVP-TIESESLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 673
>gi|402880640|ref|XP_003903906.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Papio anubis]
Length = 715
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 154/431 (35%), Positives = 233/431 (54%), Gaps = 40/431 (9%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 304 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 363
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 364 RVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVL 423
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 424 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQ 483
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 484 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 543
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN G+VT+ + M +S + +
Sbjct: 544 AAALAHISG-ATSVDQRSLINSNVGFVTM-----------ILQCSIEMPNISYAWKELKE 591
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+P E+ K +S T+ P L
Sbjct: 592 QLGE---EIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEKWHDSRRWQLSVATEQPEL-- 646
Query: 348 DGPSSDNYGRFSSRDRFSRG------GGSRFSRGGARGGARGG-GSMDRRGFRSSRSWGS 400
+GP + YG F + SRG G RF G R G+RG G G +S+RS
Sbjct: 647 EGP-REGYGGFRGQREGSRGFRGQRDGNRRFR--GQREGSRGPRGQQSGGGNKSNRSQNK 703
Query: 401 DDEDGFSSSRG 411
+ FS + G
Sbjct: 704 GQKRSFSKAFG 714
>gi|81295381|ref|NP_001032278.1| nucleolar RNA helicase 2 [Rattus norvegicus]
gi|123780397|sp|Q3B8Q1.1|DDX21_RAT RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
protein 21; AltName: Full=Gu-alpha; AltName:
Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
RNA helicase II; AltName: Full=RH II/Gu
gi|77748254|gb|AAI05879.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Rattus norvegicus]
gi|149038676|gb|EDL92965.1| rCG22008, isoform CRA_b [Rattus norvegicus]
Length = 782
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 152/431 (35%), Positives = 231/431 (53%), Gaps = 37/431 (8%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 368 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVI 427
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK+DA E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 428 RVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVL 487
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 488 VATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQ 547
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 548 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAIGHFKQSAEKLIEEKGAVEAL 607
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN + G+VT+ + M +S + +
Sbjct: 608 AAALAHISGATS-VDQRSLINSQAGFVTM-----------ILRCSVEMPNISYAWKELKE 655
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+ E E+ K ++ T+ P L
Sbjct: 656 QLGE---SIDAKVKGMVFLKGKLGVCFDVRTEAVTEIKEKWHDSRRWQLTVATEQPEL-- 710
Query: 348 DGPSSDNYGRFSSRD------RFSRGGGSRFSRGGARGGARG-GGSMDRRGFRSSRSWGS 400
+GP G RD R RGG F G RGG+R G G +S+RS
Sbjct: 711 EGPPEGYRGGRGQRDGSRGSFRGQRGGSRNFRGQGQRGGSRNFRGQRPGGGNKSNRSPNK 770
Query: 401 DDEDGFSSSRG 411
+ FS + G
Sbjct: 771 GQKRSFSKAFG 781
>gi|402880638|ref|XP_003903905.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Papio anubis]
Length = 783
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 154/431 (35%), Positives = 233/431 (54%), Gaps = 40/431 (9%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 372 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 431
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 432 RVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVL 491
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 492 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQ 551
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 552 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 611
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN G+VT+ + M +S + +
Sbjct: 612 AAALAHISGATS-VDQRSLINSNVGFVTM-----------ILQCSIEMPNISYAWKELKE 659
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+P E+ K +S T+ P L
Sbjct: 660 QLGE---EIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEKWHDSRRWQLSVATEQPEL-- 714
Query: 348 DGPSSDNYGRFSSRDRFSRG------GGSRFSRGGARGGARGG-GSMDRRGFRSSRSWGS 400
+GP + YG F + SRG G RF G R G+RG G G +S+RS
Sbjct: 715 EGP-REGYGGFRGQREGSRGFRGQRDGNRRFR--GQREGSRGPRGQQSGGGNKSNRSQNK 771
Query: 401 DDEDGFSSSRG 411
+ FS + G
Sbjct: 772 GQKRSFSKAFG 782
>gi|75319612|sp|Q41382.1|RH7_SPIOL RecName: Full=DEAD-box ATP-dependent RNA helicase 7
gi|1488647|emb|CAA68193.1| RNA helicase [Spinacia oleracea]
Length = 685
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 133/352 (37%), Positives = 202/352 (57%), Gaps = 15/352 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+PSWVK++S ++L + +DLV +Q K + ++ I +A+++ ++ D+I
Sbjct: 296 LLFSATLPSWVKQISTRFLKSAKKTVDLVSDQKMKASISVRHIVIPCSASARPDLIPDII 355
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y GG++I+FT+TK A +++ LT + LHGDI Q QRE TL GFR GKF LV
Sbjct: 356 RCYGSGGRSIIFTETKESASQLAGLLT---GARPLHGDIQQTQREVTLKGFRTGKFMTLV 412
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
AT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A++++ +R +V +
Sbjct: 413 ATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAGNTGVAVMLY-DPKRSSVTKI 471
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG---TDA 236
ER+ G KFE +S P DV ++ + A + + + F A+ L+ G D
Sbjct: 472 ERESGVKFEHLSAPQPVDVAKAVGIEAAAAILQISDSVIPAFKDAAEELLSTSGLSAVDI 531
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAA 296
L+ ALA+ +G+S RSL+ +G+VTL L F + + FL T A
Sbjct: 532 LSKALAKAAGYSD-IKERSLLTGMEGYVTLLLDAGRPFYGQSFAYTVLKRFLP---ATKA 587
Query: 297 DEIGKIHIIADDRVQGAVFDLP-EEIAKELLNKQIPPGNTISKITKLPALQD 347
D I + + AD GAVFD+P +++ L+ + G + + LP L++
Sbjct: 588 DSIMGVALTADK--SGAVFDVPVDDLETFLVGAENAAGVNLDVVKALPPLEE 637
>gi|449667537|ref|XP_002167666.2| PREDICTED: nucleolar RNA helicase 2-like [Hydra magnipapillata]
Length = 543
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 131/354 (37%), Positives = 200/354 (56%), Gaps = 16/354 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P+W++K S KYL L DL+G K A ++ AI T + + + D+I
Sbjct: 143 LLFSATVPAWLQKNSEKYLTKNLKKFDLIGRDKNKGATTVEHKAIKCTYWDRPSTIKDII 202
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIA--SEALHGDISQHQRERTLNGFRQGKFT 116
Y+ K GKTI+FT TK++A+E LAL S+I S+ LHGDI Q QRE TL FR GKF
Sbjct: 203 QQYSGKFGKTIIFTSTKQEANE--LALNSVINMDSQVLHGDIQQKQRELTLQSFRNGKFN 260
Query: 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 176
L+ATDVAARGLDIP VDL+I E P D ++++HR+GRTGRAG++G I+ + Q V
Sbjct: 261 CLIATDVAARGLDIPEVDLVIQTEPPKDVDSYIHRAGRTGRAGRKGVCIIFYKPGQEYGV 320
Query: 177 RSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
++E G F + P +D++ +SAE V +L+ V + + +F A+ LIE++G +
Sbjct: 321 AAVEHKAGISFTRIGAPQQKDLIAASAEDAVRSLDEVKEDVISYFLDCARDLIEKRGAEK 380
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAA 296
AA + +RS++ + G+ T + ++ + ++ + +
Sbjct: 381 ALAAALAYISGTTEIVNRSMLTSQPGYTTYLMKQNLELRSTGLIWHTLRRYFDQTF---I 437
Query: 297 DEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGN---TISKITKLPALQD 347
D I + I D G VFD+P E K + ++ G+ T+ IT+LP L +
Sbjct: 438 DSIKGMRICKDKL--GCVFDVPTESIKVI--EECWKGDKFSTLEPITELPELME 487
>gi|224000281|ref|XP_002289813.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
gi|220975021|gb|EED93350.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
Length = 466
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 118/277 (42%), Positives = 176/277 (63%), Gaps = 11/277 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQD-EKLAEGIKLYAISTT--ATSKRTILSD 57
+LFSAT P WVK++ Y + L+ID+ G Q ++A ++ AI A +K+ IL D
Sbjct: 186 LLFSATTPPWVKEIGSHYQRDVLSIDITGEQTGSRVASTVRHTAIQVPFGADAKKAILED 245
Query: 58 LITVYAKGGKTIVFTQTKRDADE-VSLALTSIIASEALHGDISQHQRERTLNGFRQGKFT 116
+I ++ GKTIVFT+TK++ADE VS ++ ++++A+HGDI Q QR+ TL FR G F
Sbjct: 246 IIALF---GKTIVFTETKKEADELVSGSVFKTLSAQAIHGDIGQKQRDATLAAFRAGAFN 302
Query: 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 176
VLVATDVAARG+DI +VDL+I +E P D +T+VHRSGRTGRAG G ++L+F +Q R +
Sbjct: 303 VLVATDVAARGIDIKDVDLVIQFEPPRDVDTYVHRSGRTGRAGASGISVLLFQQNQARDI 362
Query: 177 RSLERDV--GCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGT 234
+E+ + G KFE + PP E L ++A+ GV E+ F A L+ G+
Sbjct: 363 VRIEKSLGHGFKFELLGPPSTEAALNAAAKTSALACRGVADETAAHFKDAAVSLLASSGS 422
Query: 235 --DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 269
D +A LA ++ + +SRSL+ E+G+ T+++T
Sbjct: 423 PEDVVARCLAAIARRTVQVNSRSLLTGEEGYATVEMT 459
>gi|154332025|ref|XP_001561829.1| putative nucleolar RNA helicase II [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134059150|emb|CAM36848.1| putative nucleolar RNA helicase II [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 689
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 126/347 (36%), Positives = 193/347 (55%), Gaps = 11/347 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+P WV S D ID+VG + + A IK Y + ++L+DLI
Sbjct: 277 LLFSATVPEWVHTCSFIAKDKEF-IDMVGKEAVRTASTIKFYRRKCNFSEISSMLADLIK 335
Query: 61 VYAKG-GKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
VY+ G+T+VFT TK+D ++S+ T + S+ LHGD+ Q QRE T+ FR KF+VL+
Sbjct: 336 VYSGAHGRTLVFTNTKKDCHDLSINNTKL-DSQCLHGDMQQEQRESTMKSFRDNKFSVLI 394
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+P VDL+I P+D + F+HR+GRTGRAG++G +L++ + V +
Sbjct: 395 ATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLYQPREEYVVERI 454
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALA 238
ER KF+ + P E++L++ A L V + F A L+++ + LA
Sbjct: 455 ERHAKMKFDVLPAPTREEILKAVARDAAEDLARVERRATNLFMEQAAELLKDADPVEILA 514
Query: 239 AALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE 298
+ALA +SG++ ++R LI G+VT+Q+T D + D + D
Sbjct: 515 SALAVMSGYTSNITTRGLITGTPGYVTVQMTSDRPLPIPVYCSILRNNLGDDTFMRCRD- 573
Query: 299 IGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPAL 345
I ++ DD G VFD+ E+ A+ ++N + G T +I LP +
Sbjct: 574 ---ITLLQDD--PGCVFDVLEQFAESVMNTPM-RGITFQRIESLPPI 614
>gi|410975243|ref|XP_003994043.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Felis catus]
Length = 645
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 128/321 (39%), Positives = 193/321 (60%), Gaps = 9/321 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 325 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 384
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 385 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 444
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 445 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 504
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 505 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 564
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 565 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKELNRKLSS---NAVS 620
Query: 298 EIGKIHIIADDRVQGAVFDLP 318
+I ++ ++ + G FD+P
Sbjct: 621 QITRMCLLKGN--MGVCFDVP 639
>gi|311271292|ref|XP_003133100.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Sus scrofa]
Length = 738
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 120/271 (44%), Positives = 175/271 (64%), Gaps = 4/271 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 324 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 383
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 384 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 443
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 444 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 503
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 504 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 563
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
AAALA +SG S RSLI ++G+VT+ L
Sbjct: 564 AAALAHISGAS-SFEPRSLITSDKGFVTMTL 593
>gi|219119937|ref|XP_002180719.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408192|gb|EEC48127.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 822
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 141/397 (35%), Positives = 213/397 (53%), Gaps = 51/397 (12%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQD-EKLAEGIKLYAISTT--ATSKRTILSD 57
+LFSAT PSWVK++ R+Y + L ID ++ ++AE ++ A+ A +KR++L D
Sbjct: 333 LLFSATTPSWVKEIGRQYQKDVLAIDSTADKGGARVAETVRHLAVQLAPGADAKRSVLED 392
Query: 58 LITVYA--------------------------KG---------GKTIVFTQTKRDADE-V 81
+I V KG GKTIVFT+TKR+ADE V
Sbjct: 393 IIAVEISKDADIGKIELEIANPIAAAAHKRKNKGNQAMQQKIFGKTIVFTETKREADELV 452
Query: 82 SLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 141
S + + ++ALHGD+ Q QR+ TL FR G F VLVATDVAARG+DI +VDL+I ++
Sbjct: 453 SGGVFKSLTAQALHGDVGQKQRDSTLAAFRSGAFNVLVATDVAARGIDIQDVDLVIQFDP 512
Query: 142 PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV--GCKFEFVSPPVVEDVL 199
P D +T+VHRSGRTGRAGK+G ++L+F Q R + +ERD+ G KF+ V PP E L
Sbjct: 513 PRDVDTYVHRSGRTGRAGKKGVSVLLFNQRQSRDIVRIERDLGHGFKFDLVGPPSAEATL 572
Query: 200 ESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLIN 258
++A+ + E+ EFF +A +L+E + D +A LA +S + SRSL+
Sbjct: 573 NAAAKTSAIATQSIPEETAEFFKESAAKLLESQDPVDVVARCLAAVSRRASEVQSRSLLT 632
Query: 259 HEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD-----EIGKIHIIADDRVQGA 313
+ G+ T+++ + +G LS + D ++G+I +
Sbjct: 633 GQVGFATVEMVNERGRPVAANDVMFTIGKLSRMSNQEGDLAFDSQVGRIQ--TNSESGSV 690
Query: 314 VFDLPEEIAKELL--NKQIPPGNTISKITKLPALQDD 348
VFD+ E AK L+ +K + G ++ K A++ D
Sbjct: 691 VFDMNVEDAKNLVKFSKTVDAGGAAFQLLKALAVERD 727
>gi|417412883|gb|JAA52800.1| Putative nucleolar rna helicase 2, partial [Desmodus rotundus]
Length = 840
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 152/430 (35%), Positives = 230/430 (53%), Gaps = 39/430 (9%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 429 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 488
Query: 60 TVYAK-GGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S + +++LHGDI Q QRE TL GFR G F VL
Sbjct: 489 RVYSGFHGRTIIFCETKKEAQELSQNASIRQDAQSLHGDIPQKQREITLKGFRNGDFGVL 548
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 549 VATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQ 608
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 609 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 668
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN E G+VT+ + M +S + +
Sbjct: 669 AAALAHISG-ATSVDQRSLINSESGFVTM-----------ILKCSIEMPNISYAWKELKE 716
Query: 298 EIGKIHIIADDRV---------QGAVFDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V QG FD+ E+ K +S T+ P L
Sbjct: 717 QLGE---EIDSKVKGMVFLKGKQGVCFDVRTAAVTEIQEKWHDSRRWQLSVATEQPEL-- 771
Query: 348 DGPSSDNYGRFSSRDRFSRGGGSRFSRGGARG--GARGGGSMDRRGFRSSRSWGSDDEDG 405
+GP + Y F + +R G R R G R G R G R FR RS G +
Sbjct: 772 EGP-REGYRNFRGQREGNR--GHRGQREGNRNFRGQREGS----RNFRGQRSGGGSRNNR 824
Query: 406 FSSSRGGRSF 415
F + RSF
Sbjct: 825 FQNKGQKRSF 834
>gi|432106714|gb|ELK32366.1| ATP-dependent RNA helicase DDX50 [Myotis davidii]
Length = 721
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 120/271 (44%), Positives = 175/271 (64%), Gaps = 4/271 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 322 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 381
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 382 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 441
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 442 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 501
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 502 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 561
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
AAALA +SG S RSLI ++G+VT+ L
Sbjct: 562 AAALAHISGAS-SFEPRSLITSDKGFVTMTL 591
>gi|124088759|ref|XP_001347224.1| Nucleolar RNA helicase II [Paramecium tetraurelia strain d4-2]
gi|50057613|emb|CAH03597.1| Nucleolar RNA helicase II, putative [Paramecium tetraurelia]
Length = 664
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 200/367 (54%), Gaps = 18/367 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WVK+LS KY++ N +I+L+ + + + +K YA+ + D++
Sbjct: 208 LLFSATIPDWVKELSHKYMEANTKHINLIKRHETQTSTTVKHYALQCARNQLSGAIGDVV 267
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
+VY + +TI+F +TKR+ +E+ L ++ LHGDI Q QR T GF+ GKF L
Sbjct: 268 SVYGGRHARTIIFCETKRECNEIILHSKLPAETQPLHGDIPQQQRTVTFEGFKNGKFKCL 327
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLD P VDLII P D E+++HRSGRTGRAGK+G I ++ +
Sbjct: 328 VATNVAARGLDFPQVDLIIQCNPPKDIESYIHRSGRTGRAGKDGVCITFYSKKDMGLIER 387
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEE-KGTDAL 237
+ER KF +S P +D++++S+ + +L V E V+ F P AQ +I +AL
Sbjct: 388 VERVAKIKFIKISAPQHQDIIKASSRDLQTSLQVVSKEIVDMFQPVAQEIISRCDPVEAL 447
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVY-PTAA 296
A ALA +SG+ +RS++ +G++T L + F + + FL + +
Sbjct: 448 ARALACVSGYKDKLQNRSMLGSFEGYITYVLRSSTPFQ----ACGYIWKFLKNNFSEQIC 503
Query: 297 DEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQ-------IPPGNTISKITKLP-ALQDD 348
+ I + I ++ G FD+ E++ +E N+ G I + T LP +++
Sbjct: 504 NSIKGMKKIRNE--NGVAFDISEDVKEEFENQYQEISQNGYCRGIEIEQATSLPDIIEEQ 561
Query: 349 GPSSDNY 355
S NY
Sbjct: 562 FQSHQNY 568
>gi|426255666|ref|XP_004021469.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Ovis aries]
Length = 644
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 120/271 (44%), Positives = 175/271 (64%), Gaps = 4/271 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 324 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 383
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 384 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 443
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 444 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 503
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 504 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 563
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
AAALA +SG S RSLI ++G+VT+ L
Sbjct: 564 AAALAHISGAS-SFEPRSLITSDKGFVTMTL 593
>gi|338716830|ref|XP_003363525.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Equus
caballus]
Length = 644
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 120/271 (44%), Positives = 175/271 (64%), Gaps = 4/271 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 324 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 383
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 384 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 443
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 444 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 503
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 504 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 563
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
AAALA +SG S RSLI ++G+VT+ L
Sbjct: 564 AAALAHISGAS-SFEPRSLITSDKGFVTMTL 593
>gi|332218198|ref|XP_003258246.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Nomascus
leucogenys]
Length = 643
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 120/271 (44%), Positives = 175/271 (64%), Gaps = 4/271 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 323 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 382
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 383 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 442
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 443 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 502
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 503 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 562
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
AAALA +SG S RSLI ++G+VT+ L
Sbjct: 563 AAALAHISGAS-SFEPRSLITSDKGFVTMTL 592
>gi|296220525|ref|XP_002756346.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 3 [Callithrix
jacchus]
Length = 643
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 120/271 (44%), Positives = 175/271 (64%), Gaps = 4/271 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 323 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 382
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 383 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 442
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 443 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 502
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 503 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 562
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
AAALA +SG S RSLI ++G+VT+ L
Sbjct: 563 AAALAHISGAS-SFEPRSLITSDKGFVTMTL 592
>gi|395741709|ref|XP_003777630.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pongo
abelii]
gi|194374303|dbj|BAG57047.1| unnamed protein product [Homo sapiens]
Length = 643
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 120/271 (44%), Positives = 175/271 (64%), Gaps = 4/271 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 323 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 382
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 383 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 442
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 443 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 502
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 503 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 562
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
AAALA +SG S RSLI ++G+VT+ L
Sbjct: 563 AAALAHISGAS-SFEPRSLITSDKGFVTMTL 592
>gi|332834199|ref|XP_003312636.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pan
troglodytes]
gi|397489928|ref|XP_003815963.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pan
paniscus]
Length = 643
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 120/271 (44%), Positives = 175/271 (64%), Gaps = 4/271 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 323 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 382
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 383 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 442
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 443 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 502
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 503 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 562
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
AAALA +SG S RSLI ++G+VT+ L
Sbjct: 563 AAALAHISGAS-SFEPRSLITSDKGFVTMTL 592
>gi|363735177|ref|XP_421574.3| PREDICTED: nucleolar RNA helicase 2-like [Gallus gallus]
Length = 760
Score = 211 bits (536), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 119/273 (43%), Positives = 175/273 (64%), Gaps = 8/273 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ +DL+G + ++ A ++ AI ++ + +L D+I
Sbjct: 381 LLFSATCPRWVYDVAKKYMKGEYEQVDLIGKKTQRTATTVEHLAIQCRSSQRAEVLGDII 440
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEA--LHGDISQHQRERTLNGFRQGKFT 116
VY+ G+TIVF +TK++A+E LAL S + EA LHGDI Q QRE TL GFR G F
Sbjct: 441 QVYSGSHGRTIVFCETKKEANE--LALNSALKQEAQSLHGDIPQKQREVTLKGFRNGVFE 498
Query: 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 176
VL+AT+VAARGLDIP VDL+I P D ++++HRSGRTGRAG+ G I + + +
Sbjct: 499 VLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGRAGRTGICICFYQRKEEDLL 558
Query: 177 RSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TD 235
+ +E+ G F + P D++++S++ L+ V P ++++F +A+ LIEEKG D
Sbjct: 559 KQVEQKAGITFRRIGVPSATDIIKASSDDAKKCLDAVPPSAIDYFRQSARELIEEKGAVD 618
Query: 236 ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
ALAAALA +SG S RSL+N G+VT+ L
Sbjct: 619 ALAAALAHISGASS-IQQRSLLNSTAGFVTMVL 650
>gi|196004420|ref|XP_002112077.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
gi|190585976|gb|EDV26044.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
Length = 633
Score = 211 bits (536), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 142/406 (34%), Positives = 219/406 (53%), Gaps = 23/406 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNI-DLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSATMP W K KY+ + I DL+G + + ++ IS + + DL+
Sbjct: 236 LLFSATMPKWALKTIDKYMKSDKKIVDLIGKDALRTSTTVEHKVISCPYHERAATIGDLV 295
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEA--LHGDISQHQRERTLNGFRQGKFT 116
VY +TI+F+ TK++A+E LAL+S++ E LHGDI Q QRE TL GFR+G F
Sbjct: 296 KVYGGDHARTIIFSPTKKEANE--LALSSVLKQEVQVLHGDIQQAQREVTLKGFREGNFP 353
Query: 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 176
LVATDVAARGLDIP VDL+I E P D +T++HRSGRTGRA + G I + + + +
Sbjct: 354 CLVATDVAARGLDIPEVDLVIQCEPPKDADTYIHRSGRTGRANRTGICITFYKPTHQDRI 413
Query: 177 RSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TD 235
+S+E + G F + P + D++++++ +L+ V E + F A +IE KG
Sbjct: 414 KSIESEAGINFCRIGAPQLGDIIQATSRDAAKSLDSVPAEVLVHFESIASEIIETKGAVK 473
Query: 236 ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTA 295
AL+AALA +SG++ ++RSL++ +G+ T + F + S M + +V ++
Sbjct: 474 ALSAALAHISGYT-SITNRSLLSSREGFTTYVMRSQWEF-----RSVSYMWKVIEVELSS 527
Query: 296 A--DEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKIT-KLPALQDDGPSS 352
A E+ + + D + G VFDLP + + N I LP L D S
Sbjct: 528 AIKAEVRGMRMCKDKK--GVVFDLPSNLCDTVKENWKNARNIELDIADALPELLDTSSSF 585
Query: 353 DNYGRFSSRDRF----SRGGGSRFSRGGARGGARGGGSMDRRGFRS 394
+ F++ RF +R F++ +R G G+ + RGFR+
Sbjct: 586 EKPSHFNNNSRFGNNYNRHERRPFNQMASRNYTNGRGN-NPRGFRA 630
>gi|157863878|ref|XP_001687490.1| putative nucleolar RNA helicase II [Leishmania major strain
Friedlin]
gi|68223701|emb|CAJ01930.1| putative nucleolar RNA helicase II [Leishmania major strain
Friedlin]
Length = 674
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 125/347 (36%), Positives = 194/347 (55%), Gaps = 11/347 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+P WV S D ID+VG + + A IK Y + ++L+DLI
Sbjct: 277 LLFSATVPEWVHTCSFIAKDKEF-IDMVGKEAVRTASTIKFYRRKCNFSEISSMLADLIK 335
Query: 61 VYAKG-GKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
VY+ G+T+VFT TK+D ++S+ T + S+ LHGD+ Q QRE T+ FR KF+VL+
Sbjct: 336 VYSGAHGRTLVFTNTKKDCHDLSINNTKL-DSQCLHGDMQQEQRESTMKSFRDNKFSVLI 394
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+P VDL+I P+D + F+HR+GRTGRAG++G +L++ + V +
Sbjct: 395 ATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLYQPREEYVVERI 454
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALA 238
ER KF+ + P E++L++ A L V + + F A L+++ + LA
Sbjct: 455 ERHAKMKFDVLPAPTREEILKAVARDAAEDLARVERRATDLFMEQAAELLKDADPVEILA 514
Query: 239 AALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE 298
+ALA +SG++ ++R LI G+VT+Q+T D + D + D
Sbjct: 515 SALAVMSGYTSNITARGLITGTPGYVTVQMTSDRPLPVPVYCSILRNNLGDDTFMRCRD- 573
Query: 299 IGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPAL 345
I ++ DD G VFD+ E+ A+ +++ + G T +I LP +
Sbjct: 574 ---ITLLQDD--PGCVFDVLEQFAERVMSTPM-RGITFQRIEALPPI 614
>gi|417404608|gb|JAA49048.1| Putative nucleolar rna helicase 2 [Desmodus rotundus]
Length = 785
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 152/430 (35%), Positives = 230/430 (53%), Gaps = 39/430 (9%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 374 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 433
Query: 60 TVYAK-GGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S + +++LHGDI Q QRE TL GFR G F VL
Sbjct: 434 RVYSGFHGRTIIFCETKKEAQELSQNASIRQDAQSLHGDIPQKQREITLKGFRNGDFGVL 493
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 494 VATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQ 553
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 554 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 613
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN E G+VT+ + M +S + +
Sbjct: 614 AAALAHISG-ATSVDQRSLINSESGFVTM-----------ILKCSIEMPNISYAWKELKE 661
Query: 298 EIGKIHIIADDRV---------QGAVFDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V QG FD+ E+ K +S T+ P L
Sbjct: 662 QLGE---EIDSKVKGMVFLKGKQGVCFDVRTAAVTEIQEKWHDSRRWQLSVATEQPEL-- 716
Query: 348 DGPSSDNYGRFSSRDRFSRGGGSRFSRGGARG--GARGGGSMDRRGFRSSRSWGSDDEDG 405
+GP + Y F + +R G R R G R G R G R FR RS G +
Sbjct: 717 EGP-REGYRNFRGQREGNR--GHRGQREGNRNFRGQREGS----RNFRGQRSGGGSRNNR 769
Query: 406 FSSSRGGRSF 415
F + RSF
Sbjct: 770 FQNKGQKRSF 779
>gi|401414811|ref|XP_003871902.1| putative nucleolar RNA helicase II [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488123|emb|CBZ23369.1| putative nucleolar RNA helicase II [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 684
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 125/347 (36%), Positives = 193/347 (55%), Gaps = 11/347 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+P WV S D ID+VG + + A IK Y + ++L+DLI
Sbjct: 277 LLFSATVPEWVHTCSFIAKDKEF-IDMVGKEAVRTASTIKFYRRKCNFSEISSMLADLIK 335
Query: 61 VYAKG-GKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
VY+ G+T+VFT TK+D ++S+ T + S+ LHGD+ Q QRE T+ FR KF+VL+
Sbjct: 336 VYSGAHGRTLVFTNTKKDCHDLSINNTKL-DSQCLHGDMQQEQRESTMKSFRDNKFSVLI 394
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+P VDL+I P D + F+HR+GRTGRAG++G +L++ + V +
Sbjct: 395 ATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLYQPREEYVVERI 454
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALA 238
ER KF+ + P E++L++ A L V + F A L+++ + LA
Sbjct: 455 ERHAKMKFDVLPAPTREEILKAVARDAAEDLARVERRATNLFMDQAAELLKDADPVEILA 514
Query: 239 AALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE 298
+ALA +SG++ ++R LI G+VT+Q+T D + D++ D
Sbjct: 515 SALAVMSGYTSNITTRGLITGTPGYVTVQMTSDRPLPVPVYCSILRNNLGDDMFMRCRD- 573
Query: 299 IGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPAL 345
I ++ DD G VFD+ E+ A+ +++ + G T +I LP +
Sbjct: 574 ---ITLLQDD--PGCVFDVLEQFAERVMSTPM-RGITFQRIETLPPI 614
>gi|403350666|gb|EJY74800.1| DEAD/DEAH box helicase family protein [Oxytricha trifallax]
Length = 795
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/282 (40%), Positives = 178/282 (63%), Gaps = 9/282 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WVK+++++ + +DL N K ++ + +I+ ++ + L+D++
Sbjct: 287 LLFSATIPFWVKQVAKEQMAPDFQMVDLAQNLKNKTSKTVNHLSINCPYQNRMSALADIL 346
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIAS--EALHGDISQHQRERTLNGFRQGKFTV 117
Y G+TIVF TK +A+ SL L+ I E +HGDI+Q+QRE TL F++ KF+V
Sbjct: 347 ICYGGLGQTIVFCSTKAEAN--SLLLSDKIKQDIEVMHGDIAQNQREVTLKRFKENKFSV 404
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVA+RGLDIPNVDL+I E PND E+++HR+GRT RAG+ GT I + + +
Sbjct: 405 LVATDVASRGLDIPNVDLVIQVEPPNDVESYIHRAGRTARAGRTGTCITFYGKKHQYMIN 464
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD-- 235
+E+ G KF+ + P EDV+++S+ V+ L+ V+ E + F TA LI++ G D
Sbjct: 465 MIEQKAGIKFQKIGVPQPEDVIKASSRDVIKNLDQVNDEVLPLFDDTADGLIQKYGGDAK 524
Query: 236 -ALAAALAQLSG-FSRPPSSRSLINHEQGWVTLQLTRDSAFS 275
AL A LA LSG + SRS++ ++ +VT+++ D+ F+
Sbjct: 525 KALTATLAYLSGHYKNVLGSRSVLTGQENYVTIEMKFDNPFN 566
>gi|326923426|ref|XP_003207937.1| PREDICTED: nucleolar RNA helicase 2-like [Meleagris gallopavo]
Length = 602
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 140/378 (37%), Positives = 215/378 (56%), Gaps = 26/378 (6%)
Query: 1 MLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ D +DL+G + ++ A ++ AI ++ + +L D+I
Sbjct: 223 LLFSATCPRWVYDVAKKYMKDEYEQVDLIGKKTQRTATTVEHLAIQCRSSQRVEVLGDII 282
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEA--LHGDISQHQRERTLNGFRQGKFT 116
VY+ G+TIVF +TK++A+E LAL S + EA LHGDI Q QRE TL GFR G F
Sbjct: 283 QVYSGSHGRTIVFCETKKEANE--LALNSALKQEAQSLHGDIPQKQREITLKGFRNGVFE 340
Query: 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 176
VL+AT+VAARGLDIP VDL+I P D ++++HRSGRTGRAG+ G I + + +
Sbjct: 341 VLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGRAGRAGICICFYQRKEEDLL 400
Query: 177 RSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TD 235
+ +E+ G F + P +++++S++ L+ V P ++++F +A+ LIEEKG D
Sbjct: 401 KQVEQKAGITFRRIGVPSATEIIKASSDDAKKCLDAVPPSAIDYFRQSARELIEEKGAVD 460
Query: 236 ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTA 295
ALAAALA +SG S RSL+N G+VT+ L + + RS+ +
Sbjct: 461 ALAAALAHISGAS-SIQQRSLLNSTAGFVTMVL-------KCSIEMRSMSYAWRGLKEQL 512
Query: 296 ADEI-GKIHIIADDR-VQGAVFDLP-------EEIAKELLNKQIPPGNTISKITKLPALQ 346
+EI GKI + + G FD+P +E ++ Q+ + ++ + P
Sbjct: 513 GEEIDGKISAMRFLKGKMGVCFDIPVDELSHIQEQWRDTRRWQLAVAKELPELEEQPQDA 572
Query: 347 DDGPSSDNYGRFSSRDRF 364
+ GPS +G F RF
Sbjct: 573 NRGPS--RFGSFKKNGRF 588
>gi|395501396|ref|XP_003755081.1| PREDICTED: nucleolar RNA helicase 2 [Sarcophilus harrisii]
Length = 798
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/271 (43%), Positives = 178/271 (65%), Gaps = 4/271 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI+ + + ++ D+I
Sbjct: 338 LLFSATCPHWVYDVAKKYMKSTYEQVDLIGKKTQKAAVTVEHLAINCHWSQRAAVIGDVI 397
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+SL + +++LHGDI Q QRE TL GFR GKF VL
Sbjct: 398 QVYSGSHGRTIIFCETKKEAQELSLNESIKQDAQSLHGDIPQKQREITLQGFRNGKFGVL 457
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + ++ +
Sbjct: 458 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFYQKKEQHQLAQ 517
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+ER G F+ V P +++++S++ + L+ V P ++ F TAQ+LI+EKG +AL
Sbjct: 518 VERQAGITFKRVGVPSASEIIKASSKDAIRFLDSVPPAAINNFRQTAQKLIDEKGAVEAL 577
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
AAALA +SG + RSLIN + G+VT+ L
Sbjct: 578 AAALAHISGATT-VEQRSLINSDVGFVTMVL 607
>gi|417515609|gb|JAA53623.1| DEAD (Asp-Glu-Ala-Asp) box helicase 21 [Sus scrofa]
Length = 784
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 152/429 (35%), Positives = 230/429 (53%), Gaps = 37/429 (8%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 373 LLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 432
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 433 RVYSGYQGRTIIFCETKKEAQELSQNAAVRQDAQSLHGDIPQKQREITLKGFRNGDFGVL 492
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 493 VATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGICICFYQHKEEYQLTL 552
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 553 VEQKAGIKFKRIGVPSPTEIIKASSKDAIRLLDSVPPTAIGHFKQSAEKLIEEKGAVEAL 612
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN + G+VT+ + M +S + +
Sbjct: 613 AAALAHISG-ATSVDQRSLINSDAGFVTM-----------ILRCSIEMPNISYAWKELKE 660
Query: 298 EIGKIHIIADDRV---------QGAVFDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V QG FD+P E+ K +S T+ P L
Sbjct: 661 QLGE---DIDSKVKGMVFLKGKQGVCFDIPTAAVTEVQEKWHDSRRWQLSVATEQPEL-- 715
Query: 348 DGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMD-RRGFRSSRSWGSDDEDGF 406
+GP + Y F R R GG F RG +G G + R FR RS G + F
Sbjct: 716 EGP-REGYRSF----RGQREGGRGF-RGQQKGNRSFRGQREGNRNFRGQRSGGGSRSNRF 769
Query: 407 SSSRGGRSF 415
+ RSF
Sbjct: 770 QNKGQKRSF 778
>gi|350592792|ref|XP_001928807.4| PREDICTED: LOW QUALITY PROTEIN: nucleolar RNA helicase 2 [Sus
scrofa]
Length = 844
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 152/429 (35%), Positives = 230/429 (53%), Gaps = 37/429 (8%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 433 LLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 492
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 493 RVYSGYQGRTIIFCETKKEAQELSQNAAVRQDAQSLHGDIPQKQREITLKGFRNGDFGVL 552
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 553 VATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGICICFYQHKEEYQLTL 612
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 613 VEQKAGIKFKRIGVPSPTEIIKASSKDAIRLLDSVPPTAIGHFKQSAEKLIEEKGAVEAL 672
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN + G+VT+ + M +S + +
Sbjct: 673 AAALAHISG-ATSVDQRSLINSDAGFVTM-----------ILRCSIEMPNISYAWKELKE 720
Query: 298 EIGKIHIIADDRV---------QGAVFDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V QG FD+P E+ K +S T+ P L
Sbjct: 721 QLGE---DIDSKVKGMVFLKGKQGVCFDIPTAAVTEVQEKWHDSRRWQLSVATEQPEL-- 775
Query: 348 DGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMD-RRGFRSSRSWGSDDEDGF 406
+GP + Y F R R GG F RG +G G + R FR RS G + F
Sbjct: 776 EGP-REGYRSF----RGQREGGRGF-RGQQKGNRSFRGQREGNRNFRGQRSGGGSRSNRF 829
Query: 407 SSSRGGRSF 415
+ RSF
Sbjct: 830 QNKGQKRSF 838
>gi|159488923|ref|XP_001702450.1| RNA helicase [Chlamydomonas reinhardtii]
gi|158271118|gb|EDO96945.1| RNA helicase [Chlamydomonas reinhardtii]
Length = 737
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 128/358 (35%), Positives = 203/358 (56%), Gaps = 19/358 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLN--IDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
+LFSAT+P WV+ L++++L P + +DLVG+ + A +K + + + +L DL
Sbjct: 295 LLFSATLPKWVQGLTQRFL-RPGHKFLDLVGDDRMQAAVTVKHLMLPCSYPQRAGLLKDL 353
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
IT Y GG+TI+FT +K++A E+S+ L + ++ALHGD++Q RE+TL+GFR+G+F +L
Sbjct: 354 ITSYGAGGRTIIFTDSKKEAAELSVVLGDSLGAQALHGDLAQSMREQTLDGFRKGRFAIL 413
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
+ATDVAARGLD+ ++L++ + P D ET++HRSGRTGRAG G + + T V
Sbjct: 414 IATDVAARGLDVTGIELVLMVDPPADWETYIHRSGRTGRAGSSGVCVTLVTKKMEYMVPI 473
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD--- 235
+E+ G KFE + P D+ +AE+ ++ L V P V F A+R + E D
Sbjct: 474 IEKRAGMKFERIGAPQPADMARIAAERTLSLLGEVDPAVVGHFREAAERYLSESAADGRD 533
Query: 236 ---ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVY 292
ALA ALA+++G+ + +RSL+ TL + SV G L
Sbjct: 534 PAEALARALAKITGY-KVMKARSLLTAHDDCTTLLF---ECADHTIENPGSVWGHLRKTC 589
Query: 293 ---PTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN-KQIPPGNTISKITKLPALQ 346
D++ ++ + AD + GAVFD+P E + L + G T++ + LP L+
Sbjct: 590 RLDEGLLDQVKRMTVTADGK--GAVFDVPSEHVQAFLEAAEEKRGITLTLPSSLPELK 645
>gi|339896857|ref|XP_001462984.2| putative nucleolar RNA helicase II [Leishmania infantum JPCM5]
gi|321398908|emb|CAM65330.2| putative nucleolar RNA helicase II [Leishmania infantum JPCM5]
Length = 678
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 127/351 (36%), Positives = 196/351 (55%), Gaps = 19/351 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+P WV S D ID+VG + + A IK Y + ++L+DLI
Sbjct: 277 LLFSATVPEWVHTCSFIAKDKEF-IDMVGKEAVRTASTIKFYRRKCNFSEISSMLADLIK 335
Query: 61 VYAKG-GKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
VY+ G+T+VFT TK+D ++S+ T + S+ LHGD+ Q QRE T+ FR KF+VL+
Sbjct: 336 VYSGAHGRTLVFTNTKKDCHDLSINNTK-LDSQCLHGDMQQEQRESTMKSFRDNKFSVLI 394
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+P VDL+I P+D + F+HR+GRTGRAG++G +L++ + V +
Sbjct: 395 ATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLYQPREEYVVERI 454
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALA 238
ER KF+ + P E++L++ A L V + + F A L+++ + LA
Sbjct: 455 ERHAKMKFDVLPAPTREEILKAVARDAAEDLARVERRATDLFMDQAAELLKDADPVEILA 514
Query: 239 AALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE 298
+ALA +SG++ ++R LI G+VT+Q+T D V + S + DE
Sbjct: 515 SALAVMSGYTSNITTRGLITGTPGYVTVQMTSDRPL--------PVPVYCSILRNNLGDE 566
Query: 299 ----IGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPAL 345
I ++ DD G VFD+ E+ A+ +++ + G T +I LP +
Sbjct: 567 TFMRCRDITLLQDD--PGCVFDVLEQFAERVMSTPM-RGITFQRIETLPPI 614
>gi|398010006|ref|XP_003858201.1| nucleolar RNA helicase II, putative [Leishmania donovani]
gi|322496407|emb|CBZ31477.1| nucleolar RNA helicase II, putative [Leishmania donovani]
Length = 678
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 127/351 (36%), Positives = 196/351 (55%), Gaps = 19/351 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+P WV S D ID+VG + + A IK Y + ++L+DLI
Sbjct: 277 LLFSATVPEWVHTCSFIAKDKEF-IDMVGKEAVRTASTIKFYRRKCNFSEISSMLADLIK 335
Query: 61 VYAKG-GKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
VY+ G+T+VFT TK+D ++S+ T + S+ LHGD+ Q QRE T+ FR KF+VL+
Sbjct: 336 VYSGAHGRTLVFTNTKKDCHDLSINNTK-LDSQCLHGDMQQEQRESTMKSFRDNKFSVLI 394
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+P VDL+I P+D + F+HR+GRTGRAG++G +L++ + V +
Sbjct: 395 ATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLYQPREEYVVERI 454
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALA 238
ER KF+ + P E++L++ A L V + + F A L+++ + LA
Sbjct: 455 ERHAKMKFDVLPAPTREEILKAVARDAAEDLARVERRATDLFMDQAAELLKDADPVEILA 514
Query: 239 AALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE 298
+ALA +SG++ ++R LI G+VT+Q+T D V + S + DE
Sbjct: 515 SALAVMSGYTSNITTRGLITGTPGYVTVQMTSDRPL--------PVPVYCSILRNNLGDE 566
Query: 299 ----IGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPAL 345
I ++ DD G VFD+ E+ A+ +++ + G T +I LP +
Sbjct: 567 TFMRCRDITLLQDD--PGCVFDVLEQFAERVMSTPM-RGITFQRIETLPPI 614
>gi|47218719|emb|CAG05691.1| unnamed protein product [Tetraodon nigroviridis]
Length = 727
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 116/272 (42%), Positives = 177/272 (65%), Gaps = 4/272 (1%)
Query: 1 MLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + ++DL+G + +K A ++ AI+ + + ++ D+I
Sbjct: 340 LLFSATCPPWVYDVAKKYMRPSCKHVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVI 399
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ IVF +TK++A+E++L + +++LHGDI Q QRE TL GFR+G F VL
Sbjct: 400 RVYSGSHGRAIVFCETKKEANELALNASIKQNAQSLHGDIPQKQRETTLKGFRKGSFEVL 459
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + +R
Sbjct: 460 VATNVAARGLDIPEVDLVVQCSPPKDVESYIHRSGRTGRAGRTGICICFYQRKEEDQLRY 519
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E G F V P D+++SS++ V L+ + ++ +F A++LIEEKG DAL
Sbjct: 520 VENKAGITFRRVGVPTANDIIKSSSKDAVRFLDSISVAAIGYFREAAEKLIEEKGAVDAL 579
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 269
AAALA +SG + RSL++ + G+ TLQLT
Sbjct: 580 AAALAHISG-ATALEQRSLLSSDAGYTTLQLT 610
>gi|449016019|dbj|BAM79421.1| nucleolar RNA helicase II/Gu [Cyanidioschyzon merolae strain 10D]
Length = 748
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 134/357 (37%), Positives = 200/357 (56%), Gaps = 37/357 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT--SKRTILSDL 58
+LFSAT+P WV+K++ ++ P+ D+VG + + A+ ++ A+ ++ +L D+
Sbjct: 292 VLFSATIPPWVQKIAAQHQRAPVVHDVVGRTETRAAKNVRHVAVRVPDADFARFAMLEDI 351
Query: 59 ITVYAKGG--KTIVFTQTKRDADEVSLALTSIIAS--EALHGDISQHQRERTLNGFRQGK 114
+ +A+ G + IVFT TKR+ADE+++ + +S + LHGD+SQ QRE TL FR G+
Sbjct: 352 VFAHAETGNQRCIVFTDTKREADEIAMTASIFRSSVAQVLHGDVSQRQRELTLQQFRDGR 411
Query: 115 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 174
F++LVATDVAARGLDI VD+I+ P D +T++HR+GRTGRAG+ GTA++M++ S+R
Sbjct: 412 FSILVATDVAARGLDIHEVDVIVQMRPPRDVDTYIHRAGRTGRAGRSGTAVIMYSDSERG 471
Query: 175 TVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGT 234
+R+LER +FE PP +E VL+ +A+ V S P QR
Sbjct: 472 LLRALERGASIRFEQAGPPTLERVLDVAAQNAA---RAVGEASTNRVVPYFQR-----AA 523
Query: 235 DALAAALAQ-------------LSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSA 281
D LAAA + +SG + RSL+ E G TL LT +R ++
Sbjct: 524 DELAAAQFEGDARRALAAALAVISGRTH-IEHRSLLTGEAGLRTLLLT----MNRAGVTP 578
Query: 282 RSVMGF---LSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNT 335
R V+G LS D+IGK+ + D R AVFD+ E A E+L P T
Sbjct: 579 RDVLGIVRRLSQSGKLFTDDIGKVRLCRDPR--QAVFDVSVEAADEILRCMEPQSTT 633
>gi|194205947|ref|XP_001917975.1| PREDICTED: nucleolar RNA helicase 2 [Equus caballus]
Length = 785
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 143/398 (35%), Positives = 222/398 (55%), Gaps = 38/398 (9%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 374 LLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAMTVEHLAIKCHWTQRAAVIGDVI 433
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ +TI+F +TK++A E+S +++ + +++LHGDI Q QRE TL GFR G F VL
Sbjct: 434 RVYSGYQRRTIIFCETKKEAQELSQSVSIKLDAQSLHGDIPQKQREITLKGFRNGDFGVL 493
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 494 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFYQHKEEHQLAQ 553
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 554 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 613
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN + G+VT+ + M +S + +
Sbjct: 614 AAALAHISGATS-VDQRSLINSDAGFVTM-----------ILRCSIEMHNISYAWKELKE 661
Query: 298 EIGKIHIIADDRV---------QGAVFDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V QG FD+P A ++ K +S T+ P L
Sbjct: 662 QLGE---DIDSKVKGMVFLKGKQGVCFDVPTAAAADVQEKWHDSRRWQLSVATEQPEL-- 716
Query: 348 DGPSSDNYGRFSSRDRFSRGGGSRFSRGGARG--GARG 383
+GP + G RD GSR RG G G+RG
Sbjct: 717 EGPREGSRGFRGQRD------GSRGFRGRREGNRGSRG 748
>gi|432106715|gb|ELK32367.1| Nucleolar RNA helicase 2 [Myotis davidii]
Length = 799
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 152/430 (35%), Positives = 230/430 (53%), Gaps = 39/430 (9%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 389 LLFSATCPHWVYNVAKKYMKPTYEQVDLIGKRTQKAAITVEHLAIKCHWTQRAAVIGDVI 448
Query: 60 TVYAK-GGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S + +++LHGDI Q QRE TL GFR G F V+
Sbjct: 449 RVYSGFHGRTIIFCETKKEAQELSQNTSMKQDAQSLHGDIPQKQREITLKGFRNGDFGVM 508
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 509 VATNVAARGLDIPEVDLVIQCSPPKDVESYIHRSGRTGRAGRTGICICFYQHKEEYQLAQ 568
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 569 VEQKAGIKFKRIGVPSATEIIKASSKDAIRFLDSVPPTAINHFKQSAEKLIEEKGAVEAL 628
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN E G+VT+ + M +S + +
Sbjct: 629 AAALAHISG-ATSVDQRSLINSEAGFVTM-----------ILKCSIEMPNISYAWKELKE 676
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+ E + K +S T+ P L
Sbjct: 677 QLGE---DIDSKVKGMVFLKGKEGVCFDVRTEAVTGIQEKWHDSRRWQLSVATEQPEL-- 731
Query: 348 DGPSSDNYGRFSSRDRFSRGGGSRFSRGGARG--GARGGGSMDRRGFRSSRSWGSDDEDG 405
+GP G S R + G R R G+R G R G R FR RS G + +
Sbjct: 732 EGPRE---GFRSFRGQREGNRGFRGQRDGSRNFRGQRDGN----RNFRGQRSGGGNRNNR 784
Query: 406 FSSSRGGRSF 415
F + RSF
Sbjct: 785 FQNKGQKRSF 794
>gi|224136846|ref|XP_002322430.1| predicted protein [Populus trichocarpa]
gi|222869426|gb|EEF06557.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 130/353 (36%), Positives = 197/353 (55%), Gaps = 17/353 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WVK++S K+L IDLVGN+ K + ++ + + ++ ++ D+I
Sbjct: 268 LLFSATLPGWVKQISSKFLKPTKKTIDLVGNEKMKASTNVRHIVLPCSTSAIPQVIPDII 327
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
YA GG+TI+FT+ + A+E+S L + ALHG+I Q QRE TL+GFR GKF LV
Sbjct: 328 RCYASGGRTIIFTEKRESANELSGLLP---GARALHGEIQQSQREVTLSGFRSGKFLTLV 384
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
AT+VAARGLDI +V LII E PND E ++HRSGRTGRAG G A++++ +R + +
Sbjct: 385 ATNVAARGLDINDVQLIIQCEPPNDVEAYIHRSGRTGRAGNSGVAVMLY-DPRRSNISKI 443
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA--- 236
+R+ G KFE ++ P ED+ ++ + T+ V + F A+ L+ G A
Sbjct: 444 QRESGVKFEHITAPKAEDIAKAVGVEAAETIIQVSDSVIPAFKSAAEDLLNTSGLSAVEL 503
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPT-A 295
LA ALA+ +G++ SRSL++ + VTL L + + L + P
Sbjct: 504 LAKALAKATGYTE-IKSRSLLSSMENHVTLLLES----GKPIYTPSFAFSVLRRILPEDK 558
Query: 296 ADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP-PGNTISKITKLPALQD 347
+ + + + D GAVFD+ +E L Q G I + LP+LQ+
Sbjct: 559 VESVTGMTLTTDG--NGAVFDVKKEDVDAFLAAQENGAGVNIEVVKTLPSLQE 609
>gi|356535937|ref|XP_003536498.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Glycine max]
Length = 697
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 137/366 (37%), Positives = 202/366 (55%), Gaps = 22/366 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WVK+++ K+L + DLVGN K + ++ + T++++ ++ D+I
Sbjct: 307 LLFSATLPDWVKQIALKFLKPDKKTADLVGNTKMKASTNVRHIVLPCTSSARAQLIPDII 366
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y+ GG+TIVFT+TK A +++ L ++ALHGDI Q RE TL+GFR GKF LV
Sbjct: 367 RCYSSGGRTIVFTETKECASQLAGILN---GAKALHGDIQQSTREVTLSGFRSGKFMTLV 423
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
AT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A++++ +R + +
Sbjct: 424 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DPKRSNIPRI 482
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG---TDA 236
ER+ G KFE VS P +D+ ++ + + + V V F A+ L+ G +
Sbjct: 483 ERESGVKFEHVSAPQPDDIAKAVSGEAAEMIIQVSDSVVPAFKSAAEELLNSSGLPVIEL 542
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAF---SRGFMSARSVMGFLSDVYP 293
LA ALA+ G++ RSL+ + +VTL L S G+ R FL +
Sbjct: 543 LAKALAKAVGYTD-VKQRSLLTSMENYVTLVLETGKPIYTQSYGYSILRR---FLPE--- 595
Query: 294 TAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITK-LPALQDDGPSS 352
+ + + + AD G VFD+P + LN Q N ++ K LP LQ P S
Sbjct: 596 EKVEAVKGLSLTADG--NGVVFDVPAKDLDIYLNGQENASNVCLEVVKTLPQLQQKEPQS 653
Query: 353 DNYGRF 358
GRF
Sbjct: 654 RG-GRF 658
>gi|110430646|gb|ABG73436.1| DEAD/DEAH box helicase family protein [Oryza brachyantha]
Length = 688
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 141/368 (38%), Positives = 202/368 (54%), Gaps = 22/368 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WV KLS ++L +DLVG++ K + ++ A+ ++ ++ D+I
Sbjct: 294 LLFSATLPDWVGKLSLRFLKPGKKTVDLVGDEKLKASASVRHLALPCNRAARAQVIPDII 353
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y++GG+TI+FT+TK A E+S I S ALHGD++Q QRE L GFR GKF VLV
Sbjct: 354 RCYSRGGRTIIFTETKESASELS---GLIAGSRALHGDVAQAQREVILAGFRSGKFLVLV 410
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
AT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A+++F + V +
Sbjct: 411 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFDPRHKFNVNRI 470
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
ER+ G KFE +S P DV +S+ + + V + F A++L+ G A
Sbjct: 471 ERESGVKFEHISAPQPTDVAQSAGSEAAEAIASVSDSVIPVFREQAEQLLSSSGMSAADL 530
Query: 240 ALAQLS---GFSRPPSSRSLINHEQGWVTLQL-TRDSAFSRGFMSARSVMGFLSDVYPTA 295
L+ G++ RSL++ + TL L T S ++ GF V+ L P
Sbjct: 531 LAKALAKAVGYTDI-KKRSLLSSMENHTTLLLQTGRSVYAPGF-----VLSTLKRFMPEE 584
Query: 296 --ADEIGKIHIIADDRVQGAVFDLPE-EIAKELLNKQIPPGNTISKITKLPALQ--DDGP 350
AD G I + AD GAVFD+P E+ + + TI ++ +LP LQ D
Sbjct: 585 RLADVKG-ITLTADG--TGAVFDVPSAEVEDYIQGSENAAMVTIEEVKQLPPLQERDQSR 641
Query: 351 SSDNYGRF 358
S+ GRF
Sbjct: 642 GSNGGGRF 649
>gi|325183265|emb|CCA17723.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
gi|325183911|emb|CCA18369.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 660
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 133/370 (35%), Positives = 209/370 (56%), Gaps = 24/370 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P W+ +++ +Y+D ++LV + D++ + ++ AI S+ T+L+ L+
Sbjct: 279 LLFSATIPKWLHEIADRYMDKKYEFVNLVQDSDDQASLDVQHVAIPCHWQSRPTLLASLL 338
Query: 60 TVYAK-GGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY K +TI+F +TK+D +E+S+ LHGDI+Q QRE T+ FR G+ +L
Sbjct: 339 GVYGKQNARTIIFAETKKDCNELSVHPEIKQDCHVLHGDIAQAQRETTMKAFRDGQIRLL 398
Query: 119 VATDVAARGLDIPNVDLIIHYELPN------DPETFVHRSGRTGRAGKEGTAILMFTSSQ 172
+ATDVAARGLD+ NVDL+I+ E P D +T+VHRSGRTGRAGK+G I ++T Q
Sbjct: 399 IATDVAARGLDM-NVDLVINSEPPRKASGYADVDTYVHRSGRTGRAGKKGVCITLYTPRQ 457
Query: 173 RRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIE-E 231
+ + +ER +G KF P E++++ SAE+ +++ V P + F A+ +E
Sbjct: 458 KELLDLIERKIGNKFIMRDQPSQEELIKVSAEKAFKSMDQVDPVMIAIFEEKAEEYLENH 517
Query: 232 KGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAF-SRGFMSARSVMGFLS- 289
+ ALA ALA ++G + PP SL++ +VT+ T ++G+ V L+
Sbjct: 518 EPKKALAVALACITGHATPPRPHSLMSGTPDYVTVLFTSSKEIRAKGY-----VWNALNR 572
Query: 290 DVYPTAADEIGKIHIIADDRVQGAVFDLP----EEIAKELLNKQIPPGNTISKI-TKLPA 344
D P A+ I ++ I D GA FDLP E++ + + + Q N I T LP
Sbjct: 573 DFDPEVANNIKQLTITQDSY--GACFDLPMSAREKLQEIMSSSQQDRYNCPYSIPTTLPK 630
Query: 345 LQDDGPSSDN 354
LQ S+ N
Sbjct: 631 LQQSQYSNQN 640
>gi|417404458|gb|JAA48981.1| Putative nucleolar rna helicase 2 [Desmodus rotundus]
Length = 765
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/271 (42%), Positives = 175/271 (64%), Gaps = 4/271 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 374 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 433
Query: 60 TVYAK-GGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S + +++LHGDI Q QRE TL GFR G F VL
Sbjct: 434 RVYSGFHGRTIIFCETKKEAQELSQNASIRQDAQSLHGDIPQKQREITLKGFRNGDFGVL 493
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 494 VATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQ 553
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 554 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 613
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
AAALA +SG + RSLIN E G+VT+ L
Sbjct: 614 AAALAHISG-ATSVDQRSLINSESGFVTMIL 643
>gi|291297189|ref|YP_003508587.1| DEAD/DEAH box helicase [Meiothermus ruber DSM 1279]
gi|290472148|gb|ADD29567.1| DEAD/DEAH box helicase domain protein [Meiothermus ruber DSM 1279]
Length = 556
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 143/396 (36%), Positives = 230/396 (58%), Gaps = 36/396 (9%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+P+W ++LS +Y ++I+++ +DE ++ + AI ++ ++LSDL+
Sbjct: 179 LLFSATLPTWARRLSERYQKAAIHINVI--KDEAIS--YEEVAIQAPIHNRLSVLSDLLF 234
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTVLV 119
YA +TIVFT TK + ++++L L S S A +HGD+ Q RER + FR G +VLV
Sbjct: 235 AYAPE-RTIVFTSTKAECNDLALGLESRAHSAAPIHGDMGQIDRERVMERFRSGAVSVLV 293
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDIP VDL++HY LP+ E+++HRSGRTGRAG+ G ++++ ++R + +L
Sbjct: 294 ATDVAARGLDIPEVDLVVHYRLPDQNESYLHRSGRTGRAGRSGKVVILYGPREKRELETL 353
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQRLIEEKGTDALA 238
ER++ F+ V+PP E+V+ ++ ++A PE+ + + A+RLI E G DA+A
Sbjct: 354 ERELKRNFKRVNPPTPEEVM-AAKWAMLARRIAKQPEADKKLWREQAERLIAEGGVDAVA 412
Query: 239 AALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE 298
LA + G + P+ +SL+ E+ WVT++L A SR +S + L A E
Sbjct: 413 GMLALILGGA--PTPKSLMTGEENWVTVKL----AGSR--ISVNRAVAVLKS---AGAGE 461
Query: 299 IGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRF 358
IG+I + D V V PE++++ L+ ++K +++PA + S+ G+
Sbjct: 462 IGRIRL--DGDVAAYVDIRPEDLSR--LDHTALRDLRLTKASEVPA---ETRQSERQGQG 514
Query: 359 SSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRS 394
F+RG G R + G R G S R F S
Sbjct: 515 -----FARGQGKRQGQ-----GRREGSSQRERPFES 540
>gi|405978792|gb|EKC43154.1| Nucleolar RNA helicase 2 [Crassostrea gigas]
Length = 671
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 181/288 (62%), Gaps = 5/288 (1%)
Query: 1 MLFSATMPSWVKKLSRKYL--DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
+LFSAT+PSWV +RKY+ D + LV +Q+ + + ++ AI ++ + +++ D+
Sbjct: 316 LLFSATLPSWVHDTARKYMNKDKLAKVSLVNSQENRTSTTVQHLAIRSSFWDRPSVIGDV 375
Query: 59 ITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
+ VY+ K G+ I+F +TK++AD +S + + LHGDI Q +RE L FR+GKF V
Sbjct: 376 LQVYSGKNGRAIIFNETKKEADNLSCSEYIKQDAHVLHGDIPQEKRETVLKSFREGKFNV 435
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
L+ TDVAARGLDIP VDL+I P D ++++HRSGRTGRAGK G I + + +
Sbjct: 436 LLTTDVAARGLDIPEVDLVIQCNPPEDVDSYIHRSGRTGRAGKNGVCICFYKPEEEMKLA 495
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGT-DA 236
++E KF+ VS P ED++ +S E V ++ GV E++++F +A+ LI E+G DA
Sbjct: 496 NVEYRAKIKFKKVSGPTKEDIISASVEDAVRSIEGVQSETLDYFRSSAKELIAERGAEDA 555
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSV 284
LAAALA +SG S +SRS+++ ++G+ T L ++ R R++
Sbjct: 556 LAAALALISG-STKITSRSMLSSKEGFTTFYLKTNTEIQRNNYVYRAL 602
>gi|351702495|gb|EHB05414.1| Nucleolar RNA helicase 2 [Heterocephalus glaber]
Length = 777
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/271 (42%), Positives = 176/271 (64%), Gaps = 4/271 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT PSWV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 366 LLFSATCPSWVFNVAKKYMKSIYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 425
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TIVF +TK++A E+S + +++LHGDI Q QRE TL GFR G F V+
Sbjct: 426 RVYSGHQGRTIVFCETKKEAQELSQNASIKQDAQSLHGDIPQKQREITLKGFRNGDFGVM 485
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 486 VATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQ 545
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 546 VEQKAGIKFKRIGVPSPTEIIKASSKDAIRLLDSVPPTAIGHFKQSAEKLIEEKGAVEAL 605
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
AAALA +SG + RSLIN E G+VT+ L
Sbjct: 606 AAALAHISGATS-VDQRSLINSEAGFVTMIL 635
>gi|145544585|ref|XP_001457977.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425796|emb|CAK90580.1| unnamed protein product [Paramecium tetraurelia]
Length = 647
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/278 (38%), Positives = 166/278 (59%), Gaps = 3/278 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WVK+LS+KY++ N +I+L+ + + + +K YA+ + D++
Sbjct: 208 LLFSATIPDWVKELSQKYMEANTKHINLIKRHETQTSTTVKHYALQCAKNQLTGAIGDVV 267
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
+VY + +TI+F +TKR+ +E+ L ++ LHGDI Q QR T GF+ GKF L
Sbjct: 268 SVYGGRHARTIIFCETKRECNEIILHSKLPAETQPLHGDIPQQQRTVTFEGFKNGKFKCL 327
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLD P VDLII P D E+++HRSGRTGRAGK+G I ++ +
Sbjct: 328 VATNVAARGLDFPQVDLIIQCNPPKDIESYIHRSGRTGRAGKDGICITFYSKKDMSLIER 387
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEE-KGTDAL 237
+ER KF +S P +D++++S+ + +L V E V+ F P AQ ++ +AL
Sbjct: 388 VERVAKIKFIKISAPQHQDIIKASSRDLQTSLQVVSKEIVDLFQPVAQEILSRCDPVEAL 447
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFS 275
A ALA +SG+ +RS++ +G++T L + F
Sbjct: 448 ARALACVSGYKDKLQNRSMLGSFEGYITYVLRSSTPFQ 485
>gi|390333037|ref|XP_786504.3| PREDICTED: nucleolar RNA helicase 2-like [Strongylocentrotus
purpuratus]
Length = 751
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/276 (41%), Positives = 162/276 (58%), Gaps = 2/276 (0%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WV + + KY+ L +DLVG K A ++ AI+ + + ++SD+I
Sbjct: 307 LLFSATVPPWVYQTAVKYMRKDLKKVDLVGRDRMKTATTVQHLAINCSYFDRPQVISDVI 366
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY G+ +VF +TKRDA+E++++ ++ +HGDI Q QRE TL GFR+GKF L
Sbjct: 367 KVYGGLDGRCMVFCETKRDANELAMSSDVKQETQVMHGDIPQTQREVTLKGFREGKFQCL 426
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
V TDVAARGLDIP VDL+I P D ++++HRSGRTGRAG+ G + + + R ++
Sbjct: 427 VTTDVAARGLDIPEVDLVIQCNPPRDVDSYIHRSGRTGRAGRNGVCVCFYKRQEERDLQK 486
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALA 238
+E G KF+ VS P D+++SS + V L V PE V F A+ +I EKG A
Sbjct: 487 VEYKAGIKFKRVSAPQPSDIIKSSVKDVTDLLGAVQPEMVAMFKSAAEAIIAEKGAVAAL 546
Query: 239 AALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAF 274
AA S +RSL+ E+G T L S
Sbjct: 547 AAALAHITGSTAMKTRSLLTAEEGKTTFLLETQSQL 582
>gi|354475482|ref|XP_003499957.1| PREDICTED: nucleolar RNA helicase 2-like [Cricetulus griseus]
Length = 806
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 141/395 (35%), Positives = 218/395 (55%), Gaps = 36/395 (9%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI + + ++ D+I
Sbjct: 401 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWSERAAVIGDVI 460
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TKR+A E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 461 RVYSGHQGRTIIFCETKREAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGSFGVL 520
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + +
Sbjct: 521 VATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKDEYQLAQ 580
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P +++ F +A++LIEEKG +AL
Sbjct: 581 VEQKAGIKFKRIGVPSAAEIIKASSKDAIRLLDSVPPTAIDHFKQSAEKLIEEKGAVEAL 640
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN + G+VT+ + M +S + +
Sbjct: 641 AAALAHISGATS-VDQRSLINSQAGFVTM-----------ILRCSIEMHNISYAWKELKE 688
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+ E E+ K ++ T+ P L
Sbjct: 689 QLGE---SIDAKVRGMVFLKGKLGVCFDVRTEAVTEIQEKWRDSRRWQLTVATEQPEL-- 743
Query: 348 DGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGAR 382
+GP G RD GSR + G RGG+R
Sbjct: 744 EGPKEGYRGGRGQRD------GSRGAFRGQRGGSR 772
>gi|224122544|ref|XP_002318863.1| predicted protein [Populus trichocarpa]
gi|222859536|gb|EEE97083.1| predicted protein [Populus trichocarpa]
Length = 652
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 131/354 (37%), Positives = 199/354 (56%), Gaps = 19/354 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WVK +S ++L IDLVGN+ K + ++ + + + ++ D+I
Sbjct: 252 LLFSATLPDWVKNISSRFLKPTKKTIDLVGNEKMKASTNVRHIVLPCSTAAMPQVIPDVI 311
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ Y GG+TI+FT+ + A+E++ L + ALHG+I Q +RE TL+GFR GKF LV
Sbjct: 312 SCYGSGGRTIIFTEKRESANELAGLLP---GARALHGEIQQSKREVTLSGFRSGKFLTLV 368
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
AT+VAARGLDI +V LII E PND E ++HRSGRTGRAG G A++++ +R + +
Sbjct: 369 ATNVAARGLDINDVQLIIQCEPPNDVEAYIHRSGRTGRAGNSGVAVMLY-DPRRSNISKI 427
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA--- 236
+R+ G KFE ++ P ED+ +++ T+ V + F A+ L+ G A
Sbjct: 428 QRESGVKFEHITAPRAEDIAKAAGVGAAETITQVSDSVIPAFKSAAENLLSTSGLSAVEL 487
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQL-TRDSAFSRGFMSARSVMGFLSDVYPT- 294
LA ALA+ +G++ SRSL+ VTL L + ++ F A SVM + P
Sbjct: 488 LAKALAKATGYTE-IKSRSLLTSMDNHVTLLLESGKPIYTPSF--AFSVM---RRILPED 541
Query: 295 AADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQ-IPPGNTISKITKLPALQD 347
+ + + + AD GAVFD+ +E L Q G I + LP+LQ+
Sbjct: 542 KVESVTGMSLTADG--NGAVFDVKKEDVDTFLAAQENAAGVNIEVVKALPSLQE 593
>gi|302846090|ref|XP_002954582.1| hypothetical protein VOLCADRAFT_82854 [Volvox carteri f.
nagariensis]
gi|300260001|gb|EFJ44223.1| hypothetical protein VOLCADRAFT_82854 [Volvox carteri f.
nagariensis]
Length = 424
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 105/218 (48%), Positives = 145/218 (66%), Gaps = 5/218 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDE-KLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WVK ++++Y +NPL IDLVG ++ KLA+ I+L K + L L+
Sbjct: 174 LLFSATLPKWVKSVAKRYQNNPLTIDLVGEENTGKLADTIRLLVQQVDGAQKMSALQGLL 233
Query: 60 TVY---AKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFT 116
+Y A GGK I+F TK ADEV++A+ + +ALHGDISQ QRE+ L FR GK+
Sbjct: 234 AMYGNTAGGGKAIIFVNTKAKADEVNMAVNEFASCDALHGDISQAQREKALALFRDGKYN 293
Query: 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 176
LVATDVAARGLDIP+VDL+ H++LP D E F+HRSGRTGRAGK GTA+++FT + R++
Sbjct: 294 CLVATDVAARGLDIPSVDLVAHFDLPQDNEAFLHRSGRTGRAGKTGTAVVLFTEREARSL 353
Query: 177 RSLERDVGC-KFEFVSPPVVEDVLESSAEQVVATLNGV 213
+ R E V P DV+ +++ V+ L+ V
Sbjct: 354 ALILRATKVTNAELVGAPDPGDVMRTASRSVLGKLDKV 391
>gi|356575902|ref|XP_003556075.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Glycine max]
Length = 693
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 135/353 (38%), Positives = 198/353 (56%), Gaps = 19/353 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WVK+++ ++L + DLVGN K + ++ + T++++ ++ D+I
Sbjct: 302 LLFSATLPDWVKQIAARFLKPDKKTADLVGNTKMKASINVRHIVLPCTSSARAQLIPDII 361
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y+ GG+TIVFT+TK A +++ LT ++ALHGDI Q RE TL+GFR GKF LV
Sbjct: 362 RCYSSGGRTIVFTETKESASQLAGILT---GAKALHGDIQQSTREVTLSGFRSGKFMTLV 418
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
AT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A++++ +R + +
Sbjct: 419 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DPKRSNISRI 477
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG---TDA 236
ER+ G KFE VS P +D+ ++ + + + V V F A+ L+ G +
Sbjct: 478 ERESGVKFEHVSAPQPDDIAKAVSGEAAEMIIQVSDSVVPAFKSAAEDLLNNSGLPVIEL 537
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQL-TRDSAFSRGFMSARSVMGFLSDVYPTA 295
LA ALA+ G++ RSL+ + +VTL L T +++ F G L P
Sbjct: 538 LAKALAKAVGYTE-VKQRSLLTSMENYVTLLLETGKPIYTQSF-----AYGVLRRFLPEE 591
Query: 296 ADEIGK-IHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITK-LPALQ 346
E K + I AD G VFD+ + LN Q N +I K LP LQ
Sbjct: 592 KVEAVKGLSITADG--NGVVFDVAAKDLDIYLNGQENASNVSLEIVKTLPQLQ 642
>gi|334349455|ref|XP_001380649.2| PREDICTED: nucleolar RNA helicase 2-like [Monodelphis domestica]
Length = 887
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 115/265 (43%), Positives = 173/265 (65%), Gaps = 4/265 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI+ + + ++ D+I
Sbjct: 525 LLFSATCPHWVYDVAKKYMKSTYEQVDLIGKKTQKAAVTVEHLAINCHWSQRAAVIGDVI 584
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+SL + +++LHGDI Q QRE TL GFR GKF VL
Sbjct: 585 QVYSGSHGRTIIFCETKKEAQELSLNESIKQDAQSLHGDIPQKQREITLQGFRNGKFGVL 644
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + ++ +
Sbjct: 645 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFYQKKEQHQLAQ 704
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+ER G F+ V P +++++S++ + L+ V P ++ F TAQ+LI+EKG +AL
Sbjct: 705 VERQAGITFKRVGVPSASEIIKASSKDAIRFLDSVPPAAINNFRQTAQKLIDEKGAVEAL 764
Query: 238 AAALAQLSGFSRPPSSRSLINHEQG 262
AAALA +SG + RSLIN + G
Sbjct: 765 AAALAHISGATT-VEQRSLINSDVG 788
>gi|224052119|ref|XP_002191015.1| PREDICTED: nucleolar RNA helicase 2-like [Taeniopygia guttata]
Length = 589
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 110/270 (40%), Positives = 167/270 (61%), Gaps = 2/270 (0%)
Query: 1 MLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ D IDL+G + ++ A ++ AI ++ + +L D+I
Sbjct: 208 LLFSATCPRWVYDVAKKYMRDEYEQIDLIGKKAQRTATTVEHLAIQCRSSQRAGVLGDII 267
Query: 60 TVYAKG-GKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TIVF +TK++A+E+++ + +++LHGDI Q QRE TL GFR G F VL
Sbjct: 268 QVYSGSRGRTIVFCETKKEANELAMNASLKQDAQSLHGDIPQKQREITLKGFRNGVFEVL 327
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
+AT+VAARGLDIP VDL+I P D ++++HRSGRTGRAG+ G I +F + ++
Sbjct: 328 IATNVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGRAGRTGICICLFQRREEDLLKQ 387
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALA 238
+E G F+ V P DV+++S+ L V P +V++F +A+ LI+EKG A
Sbjct: 388 VEHKAGITFKRVGVPSATDVIKASSSDAKKLLEAVPPAAVDYFRKSAEELIDEKGAVAAL 447
Query: 239 AALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
AA + RSL+N G+VT+ L
Sbjct: 448 AAALAHISGAAHIQQRSLLNSTAGFVTMVL 477
>gi|15241726|ref|NP_201025.1| DEAD-box ATP-dependent RNA helicase 7 [Arabidopsis thaliana]
gi|108861902|sp|Q39189.2|RH7_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 7
gi|8809632|dbj|BAA97183.1| RNA helicase [Arabidopsis thaliana]
gi|15810145|gb|AAL07216.1| putative RNA helicase [Arabidopsis thaliana]
gi|30793911|gb|AAP40408.1| putative DEAD/DEAH box RNA helicase PRH75 [Arabidopsis thaliana]
gi|332010196|gb|AED97579.1| DEAD-box ATP-dependent RNA helicase 7 [Arabidopsis thaliana]
Length = 671
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 135/357 (37%), Positives = 198/357 (55%), Gaps = 18/357 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+PSWVK +S ++L + IDLVGN K + ++ AI + ++ D+I
Sbjct: 285 LLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIPDII 344
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ Y+ GG+TI+F +TK E+S L S ALHG+I Q QRE TL GFR GKF LV
Sbjct: 345 SCYSSGGQTIIFAETKVQVSELSGLLD---GSRALHGEIPQSQREVTLAGFRNGKFATLV 401
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
AT+VAARGLDI +V LII E P + E ++HRSGRTGRAG G A+ ++ S++ +V +
Sbjct: 402 ATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTLY-DSRKSSVSRI 460
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA--- 236
E++ G KFE ++ P +++ S + + V V F A+ L+E G A
Sbjct: 461 EKEAGIKFEHLAAPQPDEIARSGGMEAAEKVKQVCDSVVPAFLEAAKELLETSGLSAEVL 520
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYP-TA 295
LA ALA+ +GF+ RSL+ + +VTL L + S V G L V P
Sbjct: 521 LAKALAKTAGFTE-IKKRSLLTSMENYVTLHLEA----GKPIYSPSFVYGLLRRVLPDDK 575
Query: 296 ADEIGKIHIIADDRVQGAVFDLPE-EIAKELLNKQIPPGNTISKITK-LPALQDDGP 350
+ I + + AD GAVFD+ + ++ + Q G+ ++ K +P LQ+ P
Sbjct: 576 VEMIEGLSLTADK--TGAVFDVKQSDLDLFIAGAQKSAGSMSLEVVKVMPKLQEREP 630
>gi|344237686|gb|EGV93789.1| Nucleolar RNA helicase 2 [Cricetulus griseus]
Length = 729
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 141/395 (35%), Positives = 218/395 (55%), Gaps = 36/395 (9%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI + + ++ D+I
Sbjct: 324 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWSERAAVIGDVI 383
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TKR+A E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 384 RVYSGHQGRTIIFCETKREAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGSFGVL 443
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + +
Sbjct: 444 VATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKDEYQLAQ 503
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P +++ F +A++LIEEKG +AL
Sbjct: 504 VEQKAGIKFKRIGVPSAAEIIKASSKDAIRLLDSVPPTAIDHFKQSAEKLIEEKGAVEAL 563
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN + G+VT+ + M +S + +
Sbjct: 564 AAALAHISG-ATSVDQRSLINSQAGFVTM-----------ILRCSIEMHNISYAWKELKE 611
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+ E E+ K ++ T+ P L
Sbjct: 612 QLGE---SIDAKVRGMVFLKGKLGVCFDVRTEAVTEIQEKWRDSRRWQLTVATEQPEL-- 666
Query: 348 DGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGAR 382
+GP G RD GSR + G RGG+R
Sbjct: 667 EGPKEGYRGGRGQRD------GSRGAFRGQRGGSR 695
>gi|14517482|gb|AAK62631.1| AT5g62190/mmi9_10 [Arabidopsis thaliana]
Length = 671
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 135/357 (37%), Positives = 198/357 (55%), Gaps = 18/357 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+PSWVK +S ++L + IDLVGN K + ++ AI + ++ D+I
Sbjct: 285 LLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIPDII 344
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ Y+ GG+TI+F +TK E+S L S ALHG+I Q QRE TL GFR GKF LV
Sbjct: 345 SCYSSGGQTIIFAETKVQVSELSGLLD---GSRALHGEIPQSQREVTLAGFRNGKFATLV 401
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
AT+VAARGLDI +V LII E P + E ++HRSGRTGRAG G A+ ++ S++ +V +
Sbjct: 402 ATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTLY-DSRKSSVSRI 460
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA--- 236
E++ G KFE ++ P +++ S + + V V F A+ L+E G A
Sbjct: 461 EKEAGIKFEHLAAPQPDEIARSGGMEAAEKVKQVCDSVVPAFLEAAKELLETSGLSAEVL 520
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYP-TA 295
LA ALA+ +GF+ RSL+ + +VTL L + S V G L V P
Sbjct: 521 LAKALAKTAGFTE-IKKRSLLTSMENYVTLHLEA----GKPIYSPSFVYGLLRRVLPDDK 575
Query: 296 ADEIGKIHIIADDRVQGAVFDLPE-EIAKELLNKQIPPGNTISKITK-LPALQDDGP 350
+ I + + AD GAVFD+ + ++ + Q G+ ++ K +P LQ+ P
Sbjct: 576 VEMIEGLSLTADK--TGAVFDVKQSDLDLFIAGAQKSAGSMSLEVVKVMPKLQEREP 630
>gi|357444227|ref|XP_003592391.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355481439|gb|AES62642.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 641
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 124/351 (35%), Positives = 194/351 (55%), Gaps = 15/351 (4%)
Query: 1 MLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WVK +++++L ++ DLVGN K + ++ Y + T ++ ++ D+I
Sbjct: 248 LLFSATLPEWVKNIAKRFLKEDKQTADLVGNTKMKASTSVRHYILPCTGAARSQLIPDII 307
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y+ G+TI+FT+TK A +++ L + ALHGDI Q QRE TL+GFR GKF LV
Sbjct: 308 RCYSSEGRTIIFTETKESASQLAELLP---GARALHGDIQQAQREVTLSGFRYGKFMTLV 364
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
AT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A++++ +R + +
Sbjct: 365 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DPRRSNIPKI 423
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG---TDA 236
ER+ G KFE +S P D+ ++ + + V + F A+ L+ G D
Sbjct: 424 ERESGVKFEHISAPQANDIAKAVGREAAEMIMQVSDSVIPAFKSAAEELLNNSGLSVVDL 483
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAA 296
A ALA+ G++ RSL++ + +VTL L + + + + FL +
Sbjct: 484 FAKALAKAVGYTE-IKKRSLLSSMENYVTLLLENEKPIFTPTFAYKILRRFLPE---EKV 539
Query: 297 DEIGKIHIIADDRVQGAVFDL-PEEIAKELLNKQIPPGNTISKITKLPALQ 346
+ + + I AD G VFD+ E++ L K+ + + +LP LQ
Sbjct: 540 EAVKGLTITADG--NGVVFDVAAEDLDTYLAGKENVSDVRLEVLKELPRLQ 588
>gi|149038672|gb|EDL92961.1| rCG22084, isoform CRA_a [Rattus norvegicus]
gi|149038673|gb|EDL92962.1| rCG22084, isoform CRA_a [Rattus norvegicus]
Length = 398
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 116/265 (43%), Positives = 170/265 (64%), Gaps = 4/265 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 29 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 88
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 89 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 148
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G + + +R +R
Sbjct: 149 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERGQLRY 208
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 209 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 268
Query: 238 AAALAQLSGFSRPPSSRSLINHEQG 262
AAALA +SG S RSLI ++G
Sbjct: 269 AAALAHISGASS-FEPRSLITSDKG 292
>gi|395820929|ref|XP_003783808.1| PREDICTED: nucleolar RNA helicase 2 [Otolemur garnettii]
Length = 769
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 115/271 (42%), Positives = 173/271 (63%), Gaps = 4/271 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 368 LLFSATCPHWVFNVAKKYMKPTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 427
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK+DA E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 428 RVYSGHQGRTIIFCETKKDAQELSQNTAIKQDAQSLHGDIPQKQREITLKGFRNGAFGVL 487
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 488 VATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQ 547
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 548 VEQKAGIKFKRIGVPSPTEIIKASSKDAIRLLDSVPPTAINHFKESAEKLIEEKGAVEAL 607
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
AAALA +SG + RSLIN + G+VT+ L
Sbjct: 608 AAALAHISG-ATSVDQRSLINSDVGFVTMIL 637
>gi|163916596|gb|AAI57756.1| LOC734085 protein [Xenopus (Silurana) tropicalis]
Length = 758
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 112/271 (41%), Positives = 166/271 (61%), Gaps = 3/271 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P W+ +++KY+ IDLVG++ +K A ++ AI T + K +L D++
Sbjct: 365 LLFSATCPDWMYNVAKKYMKKQFEKIDLVGHRSQKAAITVEHLAIECTRSQKAAVLGDIV 424
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIAS-EALHGDISQHQRERTLNGFRQGKFTV 117
VY+ GK+I+F +K +A E++ S+ S + LHGD+ Q +RE L GFRQG F V
Sbjct: 425 QVYSGSHGKSIIFCDSKLEAHELATNCGSLKQSAKPLHGDLQQKEREVILKGFRQGSFEV 484
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVAT+VAARGLDIP VDL++ Y P + + +VHRSGRTGRAG+ G I ++ +R +R
Sbjct: 485 LVATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGICISLYEPRERHYLR 544
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDAL 237
++ER G F+ V P + +V +SS+ + +L+ V + +E F AQ LIE+KG
Sbjct: 545 NVERSTGITFKRVGIPSLLNVAKSSSADAIKSLDSVPADVIEHFKEYAQELIEKKGALTA 604
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
AA + RSL+N E G+VT+ L
Sbjct: 605 LAAALAHISGATSIKQRSLLNMEAGYVTITL 635
>gi|113931550|ref|NP_001039224.1| nucleolar RNA helicase 2 [Xenopus (Silurana) tropicalis]
gi|89272468|emb|CAJ82454.1| novel GUCT (NUC152) domain containing DEAD/DEAH box helicase
[Xenopus (Silurana) tropicalis]
Length = 755
Score = 204 bits (519), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 112/271 (41%), Positives = 166/271 (61%), Gaps = 3/271 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P W+ +++KY+ IDLVG++ +K A ++ AI T + K +L D++
Sbjct: 365 LLFSATCPDWMYNVAKKYMKKQFEKIDLVGHRSQKAAITVEHLAIECTRSQKAAVLGDIV 424
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIAS-EALHGDISQHQRERTLNGFRQGKFTV 117
VY+ GK+I+F +K +A E++ S+ S + LHGD+ Q +RE L GFRQG F V
Sbjct: 425 QVYSGSHGKSIIFCDSKLEAHELATNCGSLKQSAKPLHGDLQQKEREVILKGFRQGSFEV 484
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVAT+VAARGLDIP VDL++ Y P + + +VHRSGRTGRAG+ G I ++ +R +R
Sbjct: 485 LVATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGICISLYEPRERHYLR 544
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDAL 237
++ER G F+ V P + +V +SS+ + +L+ V + +E F AQ LIE+KG
Sbjct: 545 NVERSTGITFKRVGIPSLLNVAKSSSADAIKSLDSVPADVIEHFKEYAQELIEKKGALTA 604
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
AA + RSL+N E G+VT+ L
Sbjct: 605 LAAALAHISGATSIKQRSLLNMEAGYVTITL 635
>gi|148700136|gb|EDL32083.1| mCG141508, isoform CRA_b [Mus musculus]
Length = 398
Score = 204 bits (519), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 116/265 (43%), Positives = 170/265 (64%), Gaps = 4/265 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 29 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 88
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 89 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 148
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G + + +R +R
Sbjct: 149 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERGQLRY 208
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 209 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 268
Query: 238 AAALAQLSGFSRPPSSRSLINHEQG 262
AAALA +SG S RSLI ++G
Sbjct: 269 AAALAHISGASS-FEPRSLITSDKG 292
>gi|384247126|gb|EIE20614.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 698
Score = 204 bits (519), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 184/331 (55%), Gaps = 9/331 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+PSWVK ++R++L N +DLVG K + +K + + + T+ +DL+
Sbjct: 291 LLFSATLPSWVKDITRRFLQPNHKLVDLVGTDKMKASTSVKHMVLPCHWSQRATVAADLV 350
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y G+TI+F TK+D +E+ +L + ++ LHGDI Q QRE TL FR KF +LV
Sbjct: 351 RCYGALGRTIIFCDTKKDCNELVASLGEGMRAQPLHGDIPQQQREVTLKAFRAAKFDILV 410
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V+L+I E P DPET++HRSGRTGRA G ++ + + + +
Sbjct: 411 ATDVAARGLDINGVELVIQIEPPKDPETYIHRSGRTGRASSTGVSVTLVDRKKEGLIPFI 470
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG--TDAL 237
+ G FE + P ++ + E+ +L V V +F A +L+E G +AL
Sbjct: 471 AKRAGVTFERIGAPQPSEMARIAGERASESLVEVDKTVVPWFRAAAAQLLETVGDPEEAL 530
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
A ALA+++GFS +RSL+ + + TLQ R S+ LSD +
Sbjct: 531 AMALAKVTGFSS-IRARSLLTAHEDYTTLQFHAGQEIQRPGFVFTSLRRHLSD---EVVE 586
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNK 328
+I I + D + A+FD+P IA+ L +
Sbjct: 587 QIKGITLTTDGK--SAIFDVPSGIAQPYLTQ 615
>gi|49119283|gb|AAH73332.1| LOC398189 protein [Xenopus laevis]
Length = 727
Score = 204 bits (519), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 128/354 (36%), Positives = 196/354 (55%), Gaps = 15/354 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P W+ +++KY+ IDL+G++ +K A ++ AI T + K +L DL+
Sbjct: 333 LLFSATCPDWMYNMAKKYMRKQFEKIDLIGHRSQKAATTVEHLAIECTRSQKAAVLGDLV 392
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIAS-EALHGDISQHQRERTLNGFRQGKFTV 117
VY+ GKTI+F +K +A ++ + S+ S ++LHGD+ Q +RE L GFRQG F V
Sbjct: 393 QVYSGSHGKTIIFCDSKLEAHTLATSCGSLKQSAKSLHGDLQQKEREVVLKGFRQGTFEV 452
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
L+AT+VAARGLDIP VDL++ Y P + + +VHRSGRTGRAG+ G I ++ +R +R
Sbjct: 453 LIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCISLYEPWERHYLR 512
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDAL 237
++ER G F+ V P + +V +SS+ + +L+ V + +E F AQ LIE+KG
Sbjct: 513 NVERSTGITFKRVGVPSLLNVAKSSSADAIKSLDTVPADVIEHFKEYAQELIEQKGALTA 572
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AA + RSL+N E G VT+ L + +S+ L D D
Sbjct: 573 IAAALAHISGATSIKQRSLLNMEAGCVTITLKSSVPIHSLSYAWQSIKEQLGD------D 626
Query: 298 EIGKIH---IIADDRVQGAVFDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
KIH ++ D G FD+ E + + + + T+LPA+Q+
Sbjct: 627 VDSKIHRMCLLKDS--MGVCFDVRSENLESMQERWTDTKQWQFTVATELPAIQE 678
>gi|403257506|ref|XP_003921357.1| PREDICTED: nucleolar RNA helicase 2-like [Saimiri boliviensis
boliviensis]
Length = 648
Score = 204 bits (519), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 144/430 (33%), Positives = 220/430 (51%), Gaps = 38/430 (8%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 237 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAEVIGDVI 296
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 297 RVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVL 356
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VA LDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 357 VATNVAEHPLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQ 416
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALA 238
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG
Sbjct: 417 VEQKAGIKFKRIGIPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 476
Query: 239 AALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE 298
AA + RSLIN G+VT+ + M +S + ++
Sbjct: 477 AAAPARISGATSVDQRSLINSNVGFVTM-----------ILRCSIEMPDISYAWKELKEQ 525
Query: 299 IGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQDD 348
+G+ D +V+G V FD+P E+ K +S T+ P L +
Sbjct: 526 LGE---EIDSKVKGMVFLKGKLGVCFDVPPASITEIQEKWHDSRRWQLSVATEQPEL--E 580
Query: 349 GPSSDNYGRFSSRDRFSRG------GGSRFSRGGARGGARGG-GSMDRRGFRSSRSWGSD 401
GP + YG F + SRG G RF G R G RG G G +S+RS
Sbjct: 581 GP-REGYGGFRGQREGSRGFRGQRDGNRRFR--GQREGNRGPRGQRSGSGNKSNRSQDKG 637
Query: 402 DEDGFSSSRG 411
+ FS + G
Sbjct: 638 QKQSFSKAFG 647
>gi|387018184|gb|AFJ51210.1| Nucleolar RNA helicase 2-like [Crotalus adamanteus]
Length = 701
Score = 204 bits (519), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 114/271 (42%), Positives = 178/271 (65%), Gaps = 4/271 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + DL+G + +K A ++ AI + + ++ D+I
Sbjct: 316 LLFSATCPQWVYNVAKKYMKSKYEQFDLIGKKTKKTATTVEHLAIECHWSQRAAVIGDVI 375
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E++L + +++LHGDI Q QRE TL GFR G F VL
Sbjct: 376 QVYSGSHGRTIIFCETKKEATELALNASIKQDAQSLHGDIPQKQREVTLKGFRNGAFEVL 435
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + ++
Sbjct: 436 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGLCICFYQRREDYQLKQ 495
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D++++S++ + +L+ V P ++++F +A++LIEEKG +AL
Sbjct: 496 VEQKAGITFKRVGVPTATDIIKASSKDAIRSLDSVPPSAIDYFRQSAEQLIEEKGAVEAL 555
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
AAALA +SG + RSL+N + G+VT+ L
Sbjct: 556 AAALAHISG-ATSIEQRSLLNSDVGYVTMIL 585
>gi|344275097|ref|XP_003409350.1| PREDICTED: nucleolar RNA helicase 2 [Loxodonta africana]
Length = 787
Score = 204 bits (518), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 121/318 (38%), Positives = 192/318 (60%), Gaps = 18/318 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + T++ D+I
Sbjct: 374 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTHRATVIGDVI 433
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S + +++LHGDI Q QRE TL GFR G F VL
Sbjct: 434 RVYSGYHGRTIIFCETKKEAQELSQNASIKQDAQSLHGDIPQKQREITLKGFRNGAFGVL 493
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 494 VATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQYKEEYQLAQ 553
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ +F +A++LIEEKG +AL
Sbjct: 554 VEQKAGIKFKRIGVPSATEIVKASSKDAIRYLDSVPPTAISYFKQSAEKLIEEKGAVEAL 613
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLI+ + G VT+ + M +S + +
Sbjct: 614 AAALAHISG-ATAVDQRSLISLDVGLVTM-----------ILKCSIEMSNISYAWKELKE 661
Query: 298 EIGKIHIIADDRVQGAVF 315
++G+ D +V+G VF
Sbjct: 662 QLGE---DIDSKVKGMVF 676
>gi|440895815|gb|ELR47909.1| Nucleolar RNA helicase 2, partial [Bos grunniens mutus]
Length = 680
Score = 204 bits (518), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 115/271 (42%), Positives = 175/271 (64%), Gaps = 4/271 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 373 LLFSATCPYWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 432
Query: 60 TVYAK-GGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S + +++LHGDI Q QRE TL GFR G F VL
Sbjct: 433 RVYSGFQGRTIIFCETKKEAQELSQNVAVRQDAQSLHGDIPQKQREITLKGFRNGDFGVL 492
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 493 VATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQ 552
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 553 VEQKAGIKFKRIGVPSPTEIIKASSKDAIRLLDSVPPTAIGHFKQSAEKLIEEKGAVEAL 612
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
AAALA +SG + RSLIN E G+VT+ L
Sbjct: 613 AAALAHISG-ATSVDQRSLINSEAGFVTMIL 642
>gi|412985798|emb|CCO16998.1| predicted protein [Bathycoccus prasinos]
Length = 689
Score = 204 bits (518), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 128/334 (38%), Positives = 186/334 (55%), Gaps = 18/334 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WVK +++++L IDLVGN+ +K + ++ + + +++ DLI
Sbjct: 269 LLFSATLPPWVKDIAKRFLKKDYATIDLVGNEKQKASGQVQHLLLPCQWQERVSLIPDLI 328
Query: 60 TVYAK-GGKTIVFTQTKRDADEVSLALTSII--ASEALHGDISQHQRERTLNGFRQGKFT 116
A GG+ I+F TKRD E+ AL S + ++ALHGDI+Q+ RE L GFR KF
Sbjct: 329 RAKAPTGGRCILFCDTKRDCTELCDALQSSLEKGAKALHGDIAQNNREVVLQGFRDNKFQ 388
Query: 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 176
VLVATDVAARGLDI V+L+I E P DPET++HRSGRTGRAG G + + T +
Sbjct: 389 VLVATDVAARGLDISGVELVIQCEPPKDPETYIHRSGRTGRAGATGICVTLLTPRNEWAI 448
Query: 177 RSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEE----- 231
++ER G +F + PP ++ +++A+ V + VH + + F A+ L+EE
Sbjct: 449 PNIERKGGFRFVRIGPPQPAEMAKAAAKIVCEKVRAVHKGAAKLFMQAARDLLEEGDDHD 508
Query: 232 KGTDA---LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFL 288
+G DA LA ALA G RSL+ G TL L SA + V FL
Sbjct: 509 EGRDAVEVLAMALAHACGHGE-LRQRSLLTSTAGSTTLIL---SAGGTEIRTPTYVWNFL 564
Query: 289 SDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIA 322
P +I ++ + D+ AVFD+P ++A
Sbjct: 565 KQRLPEDEVQINRLTLSQDNL--KAVFDVPAKLA 596
>gi|407397666|gb|EKF27840.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi marinkellei]
Length = 634
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 192/349 (55%), Gaps = 15/349 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+P WV S D ID+VG + A IK Y + +L+DL+
Sbjct: 243 LLFSATVPEWVHTCSFIPKDKEF-IDMVGQGTMRAAHTIKFYRRKCHFSEVSCMLADLVK 301
Query: 61 VYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
VY+ + G+T+VFT TK+D ++S+ T + S+ LHGD+ Q QRE T+ FR KF+VL+
Sbjct: 302 VYSGRHGRTLVFTNTKKDCHDLSINNTKL-DSQCLHGDMQQEQRESTMKSFRDNKFSVLI 360
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+P VDL+I P D + F+HR+GRTGRAG++G +L+ V +
Sbjct: 361 ATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLHQPKDEYIVERI 420
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEK-GTDALA 238
ER KFE + P +++L + A L V + F A L+++ T+ LA
Sbjct: 421 ERHAKIKFEVLPAPTRDEILRAVARDAAEDLARVERSATNLFMEQAAELLKDADATEILA 480
Query: 239 AALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSA--RSVMGFLSDVYPTAA 296
+A+A +SG++ + R LI +G VT+Q+ + R+ +G +++
Sbjct: 481 SAIAVMSGYTSSITRRGLITGAKGSVTIQMLGQRTLPIPVFCSILRNSLG--DNLFTRCR 538
Query: 297 DEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPAL 345
D I ++ + G VFD+PEE+A ++L+ I G +S I LP +
Sbjct: 539 D----ITLLQES--PGCVFDVPEEVADQILSTPI-RGMELSVIETLPPI 580
>gi|148700137|gb|EDL32084.1| mCG141508, isoform CRA_c [Mus musculus]
Length = 689
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/265 (43%), Positives = 170/265 (64%), Gaps = 4/265 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 320 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 379
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 380 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 439
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G + + +R +R
Sbjct: 440 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERGQLRY 499
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 500 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 559
Query: 238 AAALAQLSGFSRPPSSRSLINHEQG 262
AAALA +SG S RSLI ++G
Sbjct: 560 AAALAHISGAS-SFEPRSLITSDKG 583
>gi|149038674|gb|EDL92963.1| rCG22084, isoform CRA_b [Rattus norvegicus]
Length = 689
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/265 (43%), Positives = 170/265 (64%), Gaps = 4/265 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 320 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 379
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 380 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 439
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G + + +R +R
Sbjct: 440 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERGQLRY 499
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 500 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 559
Query: 238 AAALAQLSGFSRPPSSRSLINHEQG 262
AAALA +SG S RSLI ++G
Sbjct: 560 AAALAHISGAS-SFEPRSLITSDKG 583
>gi|449451928|ref|XP_004143712.1| PREDICTED: uncharacterized protein LOC101209696 [Cucumis sativus]
Length = 1247
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 126/352 (35%), Positives = 191/352 (54%), Gaps = 14/352 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WVK ++ ++L + +DLVGN+ K ++ ++ I + T + ++ D+I
Sbjct: 845 LLFSATLPDWVKNITSRFLKASKKTVDLVGNEKMKASKDVRHIVIPCSDTERSRLIPDII 904
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y+ GG+TI+FT+TK A E++ L + LHGDI Q QR T++GFR GKF +LV
Sbjct: 905 RCYSSGGRTIIFTETKESASELAGLLP---GARPLHGDIQQSQRSVTISGFRSGKFLILV 961
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
AT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A+ ++ + + +
Sbjct: 962 ATNVAARGLDINDVQLIIQCEAPKDIEAYIHRSGRTGRAGNTGVAVTLYDPRKSGRIARI 1021
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEE---KGTDA 236
ERD G KFE +S P D+ S+ ++ V + F A+ ++ +
Sbjct: 1022 ERDSGVKFEHLSAPQPIDIARSAGASAAESVTQVSDSVIPPFKSAAEEMVNSSTLSAVEL 1081
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAA 296
LA ALA+LSG++ SRSL+ + +VTL L + + FL +
Sbjct: 1082 LAKALAKLSGYTE-IKSRSLLTSMENYVTLILEPGKPMYSPSFAYSILRRFLPE---EKV 1137
Query: 297 DEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
+ + + + AD AVFD+ E L Q + +I + LP LQD
Sbjct: 1138 ESVKGMSLTADG--SSAVFDVQTEDLDAFLTGQANAADVSIEVLKSLPKLQD 1187
>gi|7211427|gb|AAF40306.1|AF156667_1 RNA helicase [Vigna radiata]
Length = 713
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 130/352 (36%), Positives = 193/352 (54%), Gaps = 17/352 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WVK ++ ++L + DLVGN K + ++ + +A ++ ++ D+I
Sbjct: 318 LLFSATLPDWVKHIAAQFLKPDKKTADLVGNTKMKASTNVRHIVLPCSAPARSQLIPDII 377
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QRE TL GFR GKF LV
Sbjct: 378 RCYSSGGRTIIFTETKESASQLAGLLP---GARALHGDIQQAQREVTLFGFRSGKFMTLV 434
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
AT+VAARGLDI +V LII E P + E+++HRSGRTGRAG G A ++ +R + +
Sbjct: 435 ATNVAARGLDINDVQLIIQCEFPREVESYIHRSGRTGRAGNTGVAGTLY-DPKRSNISKI 493
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG---TDA 236
ER+ G KFE +S P +D+ ++ + + V + F TA+ L++ G +
Sbjct: 494 ERESGVKFEHISAPRPDDIAKAVGGEAAEMITQVSDSVIPAFKETAEELLKSSGLTVVEL 553
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAA 296
LA ALA+ G++ RSL+ + +VTL L + + G L P
Sbjct: 554 LAKALAKAVGYTE-IKQRSLLTSMENYVTLLL----EIGKPIFTPSFAYGILRRFLPEEK 608
Query: 297 DEIGK-IHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITK-LPALQ 346
E K + + AD GAVFD+P E L+ Q N ++ K LP LQ
Sbjct: 609 VEAVKGLSLTADG--NGAVFDVPAEDLNTYLSGQENAANVSLEVLKALPRLQ 658
>gi|1488521|emb|CAA68194.1| RNA helicase [Arabidopsis thaliana]
Length = 671
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 134/357 (37%), Positives = 197/357 (55%), Gaps = 18/357 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+PSWVK +S ++L + IDLVGN K + ++ AI + ++ D+I
Sbjct: 285 LLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIPDII 344
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ Y+ GG+TI+F +TK E+S L S ALHG+I Q QRE TL GFR GKF LV
Sbjct: 345 SCYSSGGQTIIFAETKVQVSELSGLLD---GSRALHGEIPQSQREVTLAGFRNGKFATLV 401
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
AT+VAARGLDI +V LII E P + E ++HRSGRTGRAG G + ++ S++ +V +
Sbjct: 402 ATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVPVTLY-DSRKSSVSRI 460
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA--- 236
E++ G KFE ++ P +++ S + + V V F A+ L+E G A
Sbjct: 461 EKEAGIKFEHLAAPQPDEIARSGGMEAAEKVKQVCDSVVPAFLEAAKELLETSGLSAEVL 520
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYP-TA 295
LA ALA+ +GF+ RSL+ + +VTL L + S V G L V P
Sbjct: 521 LAKALAKTAGFTE-IKKRSLLTSMENYVTLHLEA----GKPIYSPSFVYGLLRRVLPDDK 575
Query: 296 ADEIGKIHIIADDRVQGAVFDLPE-EIAKELLNKQIPPGNTISKITK-LPALQDDGP 350
+ I + + AD GAVFD+ + ++ + Q G+ ++ K +P LQ+ P
Sbjct: 576 VEMIEGLSLTADK--TGAVFDVKQSDLDLFIAGAQKSAGSMSLEVVKVMPKLQEREP 630
>gi|148700135|gb|EDL32082.1| mCG141508, isoform CRA_a [Mus musculus]
Length = 624
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/265 (43%), Positives = 170/265 (64%), Gaps = 4/265 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 255 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 314
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 315 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 374
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G + + +R +R
Sbjct: 375 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERGQLRY 434
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 435 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 494
Query: 238 AAALAQLSGFSRPPSSRSLINHEQG 262
AAALA +SG S RSLI ++G
Sbjct: 495 AAALAHISGAS-SFEPRSLITSDKG 518
>gi|71406310|ref|XP_805705.1| nucleolar RNA helicase II [Trypanosoma cruzi strain CL Brener]
gi|70869212|gb|EAN83854.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
Length = 660
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/388 (34%), Positives = 207/388 (53%), Gaps = 29/388 (7%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WV S ++ N ID+VG + A IK Y + +L+DL+
Sbjct: 243 LLFSATVPEWVHTCS--FIPRNKEFIDMVGQGTMRAANTIKFYRRKCHFSEVSCMLADLV 300
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ + G+T+VFT TK++ ++S+ T + S+ LHGD+ Q QRE T+ FR KF+VL
Sbjct: 301 KVYSGRHGRTLVFTNTKKECHDLSINNTKL-DSQCLHGDMQQEQRESTMKSFRDNKFSVL 359
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
+ATDVAARGLD+P VDL+I P D + F+HR+GRTGRAG++G +L+ V
Sbjct: 360 IATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLHQPKDEYIVER 419
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEK-GTDAL 237
+ER KFE + P +++L + A L V + F A L+++ T+ L
Sbjct: 420 IERHAKIKFEVLPAPTRDEILRAVARDAAEDLARVERSATNLFMEQAAELLKDADATEIL 479
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSA--RSVMGFLSDVYPTA 295
A+A+A +SG++ + R LI +G VT+Q+ + R+ +G +++
Sbjct: 480 ASAIAVMSGYTSSITRRGLITGAKGSVTIQMLGQRTLPIPVFCSILRNSLG--DNLFTRC 537
Query: 296 ADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNY 355
D I ++ + G VFD+PEE+A ++L+ I G + I LP + +S N
Sbjct: 538 RD----ITLLQES--PGCVFDVPEEVADQILSAPI-RGMQLGVIETLPPIIARELNSGNR 590
Query: 356 GRFSSRDRFSRGGGSRFSRGGARGGARG 383
G GGG + G RGG+ G
Sbjct: 591 G----------GGGQSYFNG--RGGSNG 606
>gi|159478160|ref|XP_001697172.1| hypothetical protein CHLREDRAFT_119793 [Chlamydomonas reinhardtii]
gi|158274646|gb|EDP00427.1| predicted protein [Chlamydomonas reinhardtii]
Length = 384
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 96/180 (53%), Positives = 130/180 (72%), Gaps = 4/180 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDE-KLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WVK ++++Y NPL IDLVG ++ +LA+ I+L K + L ++
Sbjct: 205 LLFSATLPKWVKSVAKRYQQNPLTIDLVGEENTGRLADTIRLLVQQVEGAQKMSALQGVL 264
Query: 60 TVY---AKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFT 116
++Y A GGK I+F TK ADEV+LA+ +ALHGDISQ QRE+ L+ FR+GK+
Sbjct: 265 SMYGNTAGGGKAIIFVNTKAKADEVNLAVNEFAPCDALHGDISQAQREKALSLFREGKYA 324
Query: 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 176
LVATDVAARGLDIPNVDL++HY++P D E F+HRSGRTGRAGK GTA+++FT + R +
Sbjct: 325 ALVATDVAARGLDIPNVDLVVHYDVPQDNEAFLHRSGRTGRAGKTGTAVVLFTDRESRAL 384
>gi|449530205|ref|XP_004172086.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Cucumis
sativus]
Length = 696
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 126/352 (35%), Positives = 191/352 (54%), Gaps = 14/352 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WVK ++ ++L + +DLVGN+ K ++ ++ I + T + ++ D+I
Sbjct: 294 LLFSATLPDWVKNITSRFLKASKKTVDLVGNEKMKASKDVRHIVIPCSDTERSRLIPDII 353
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y+ GG+TI+FT+TK A E++ L + LHGDI Q QR T++GFR GKF +LV
Sbjct: 354 RCYSSGGRTIIFTETKESASELAGLLP---GARPLHGDIQQSQRSVTISGFRSGKFLILV 410
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
AT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A+ ++ + + +
Sbjct: 411 ATNVAARGLDINDVQLIIQCEAPKDIEAYIHRSGRTGRAGNTGVAVTLYDPRKSGRIARI 470
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEE---KGTDA 236
ERD G KFE +S P D+ S+ ++ V + F A+ ++ +
Sbjct: 471 ERDSGVKFEHLSAPQPIDIARSAGASAAESVTQVSDSVIPPFKSAAEEMVNSSTLSAVEL 530
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAA 296
LA ALA+LSG++ SRSL+ + +VTL L + + FL +
Sbjct: 531 LAKALAKLSGYTE-IKSRSLLTSMENYVTLILEPGKPMYSPSFAYSILRRFLPE---EKV 586
Query: 297 DEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
+ + + + AD AVFD+ E L Q + +I + LP LQD
Sbjct: 587 ESVKGMSLTADG--SSAVFDVQTEDLDAFLTGQANAADVSIEVLKSLPKLQD 636
>gi|403274099|ref|XP_003928826.1| PREDICTED: nucleolar RNA helicase 2 [Saimiri boliviensis
boliviensis]
Length = 840
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 124/318 (38%), Positives = 188/318 (59%), Gaps = 18/318 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 450 LLFSATCPHWVFNVAKKYMKSAYEQVDLIGKKTQKTAITVEHLAIKCHWTQRSGVIGDVI 509
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 510 RVYGGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVL 569
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 570 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQ 629
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 630 VEQKAGIKFKRIGIPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 689
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN G+VT+ L R + ++ +V +
Sbjct: 690 AAALAHISGATS-VDQRSLINSNVGFVTMIL-------RCSIEMPNISYAWKEVKEQLGE 741
Query: 298 EIGKIHIIADDRVQGAVF 315
EI D +V+G VF
Sbjct: 742 EI-------DSKVKGMVF 752
>gi|422294259|gb|EKU21559.1| dead deah box rna [Nannochloropsis gaditana CCMP526]
Length = 737
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 129/360 (35%), Positives = 202/360 (56%), Gaps = 23/360 (6%)
Query: 1 MLFSATMPSWVKKLSRKYL--DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
+LFSAT+P WV+K++++Y+ D + +DLV +D K + ++ AI +S + ++D
Sbjct: 326 LLFSATLPPWVQKVAQQYMRKDKLVQVDLVQGEDAKASTDVRHVAIPCHWSSMPSTVADC 385
Query: 59 ITVY--AKGGKTIVFTQTKRDADEVSLALTSIIASE--ALHGDISQHQRERTLNGFRQGK 114
+ VY + +TIVF +TK++ +E L + +I +E ALHGDI Q QRE TL FR+G+
Sbjct: 386 LAVYGGSNKARTIVFCETKKECNE--LVVNPVIKTECAALHGDIPQAQRETTLKAFREGR 443
Query: 115 FTVLVATDVAARGLDIPNVDLIIHYELP------NDPETFVHRSGRTGRAGKEGTAILMF 168
VLVATDVAARGLD+ VDL++ + P D ET+VHRSGRTGRAG++G + +F
Sbjct: 444 VRVLVATDVAARGLDM-TVDLVVQNKPPVTASGRTDVETYVHRSGRTGRAGRKGICVTLF 502
Query: 169 TSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRL 228
+ R V+ +E VG KFE+ P D++ +SA + + V + F A +L
Sbjct: 503 SPKYRFAVKEIEGAVGNKFEWAGAPQPADIVAASALAAMEDVANVDDKVFPLFQAAAAKL 562
Query: 229 IEEKGTDALAAALAQ-LSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGF 287
+EE G + AA L+G ++ SRSL+++ +VT Q D + MS V
Sbjct: 563 VEEMGAEEALAAALACLTGHTKELRSRSLLSNSDDYVTCQFQAD----QPIMSTGYVWTA 618
Query: 288 LSDVYPTAADE-IGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQ 346
L + P E I + + AD+ GAVFD+P + K + + + ++ LP ++
Sbjct: 619 LRNALPQEVTEDIRGMQLTADN--TGAVFDVPSKYMKTSMKRAVEENPFLTVCKTLPEIK 676
>gi|407835252|gb|EKF99205.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
Length = 642
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 138/411 (33%), Positives = 210/411 (51%), Gaps = 24/411 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+P WV S ID+VG + A IK Y + +L+DL+
Sbjct: 243 LLFSATVPEWVHTCSFIPRKKEF-IDMVGQGTMRAANTIKFYRRKCHFSEVSCMLADLVK 301
Query: 61 VYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
VY+ + G+T+VFT TK++ ++S+ T + S+ LHGD+ Q QRE T+ FR KF+VL+
Sbjct: 302 VYSGRHGRTLVFTNTKKECHDLSINNTKL-DSQCLHGDMQQEQRESTMKSFRDNKFSVLI 360
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+P VDL+I P D + F+HR+GRTGRAG++G +L+ V +
Sbjct: 361 ATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLHQPKDEYIVERI 420
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEK-GTDALA 238
ER KFE + P +++L + A L V + F A L+++ T+ LA
Sbjct: 421 ERHAKIKFEVLPAPTRDEILRAVARDAAEDLARVERSATNLFMDQAAELLKDADATEILA 480
Query: 239 AALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSA--RSVMGFLSDVYPTAA 296
+A+A +SG++ + R LI +G VT+Q+ + R+ +G +++
Sbjct: 481 SAIAVMSGYTSSITRRGLITGAKGSVTIQMLGQRTLPIPVFCSILRNSLG--DNLFTRCR 538
Query: 297 DEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNY- 355
D I ++ + G VFD+PEE+A ++L+ I G + I LP + +S N
Sbjct: 539 D----ITLLQES--PGCVFDVPEEVADQILSAPI-RGMQLDVIETLPPIIARELNSGNRG 591
Query: 356 --------GRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSW 398
GR S + GGGS + G G R G G R R +
Sbjct: 592 GGGQGYFNGRGGSNGYYRNGGGSGYRSNGYGSGYRSNGYGSGGGRRVQRRY 642
>gi|80477520|gb|AAI08449.1| LOC398188 protein [Xenopus laevis]
Length = 768
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 129/368 (35%), Positives = 203/368 (55%), Gaps = 20/368 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P W+ +++KY+ +DLVG++ +K A ++ AI + K +L D++
Sbjct: 375 LLFSATCPDWMYNVAKKYMRKQYEKVDLVGHRSQKAAITVEHLAIECNRSQKAAVLGDIV 434
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIAS-EALHGDISQHQRERTLNGFRQGKFTV 117
VY+ GKTI+F +K A E+S S+ S + LHGD+ Q +RE L GFRQG F V
Sbjct: 435 QVYSGSHGKTIIFCDSKLQAHELSTNCGSLKQSAKPLHGDLQQKEREVVLKGFRQGTFEV 494
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
L+AT+VAARGLDIP VDL++ Y P + + +VHRSGRTGRAG+ G I ++ ++ +R
Sbjct: 495 LIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCISLYEPWEKHYLR 554
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDAL 237
++ER G F+ V P + +V +SS+ + +L+ V + +E F AQ LIE+KG
Sbjct: 555 NVERSTGITFKRVGIPSLMNVAKSSSADAIKSLDTVPADVIEHFKEYAQELIEKKGALTA 614
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AA + RSL+N E G++T+ L + RS+ L +
Sbjct: 615 LAAALAHISGATSIKQRSLLNMEAGYMTITLKSSVPIHNLSYAWRSIKEQLGE---DVDS 671
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNT----ISKITKLPALQD-----D 348
+I ++ ++ D G FD+ E +L + Q +T + T+LP +Q+ D
Sbjct: 672 KIHRMCLLKDS--MGVCFDVRSE---DLQSMQESWSDTRRWQFTITTELPEIQESERSFD 726
Query: 349 GPSSDNYG 356
GP + ++G
Sbjct: 727 GPRNRSFG 734
>gi|148224339|ref|NP_001082033.1| nucleolar RNA helicase 2 [Xenopus laevis]
gi|10764780|gb|AAG22818.1|AF302422_1 RNA helicase II/Gu [Xenopus laevis]
Length = 800
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 129/368 (35%), Positives = 203/368 (55%), Gaps = 20/368 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P W+ +++KY+ +DLVG++ +K A ++ AI + K +L D++
Sbjct: 407 LLFSATCPDWMYNVAKKYMRKQYEKVDLVGHRSQKAAITVEHLAIECNRSQKAAVLGDIV 466
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIAS-EALHGDISQHQRERTLNGFRQGKFTV 117
VY+ GKTI+F +K A E+S S+ S + LHGD+ Q +RE L GFRQG F V
Sbjct: 467 QVYSGSHGKTIIFCDSKLQAHELSTNCGSLKQSAKPLHGDLQQKEREVVLKGFRQGTFEV 526
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
L+AT+VAARGLDIP VDL++ Y P + + +VHRSGRTGRAG+ G I ++ ++ +R
Sbjct: 527 LIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCISLYEPWEKHYLR 586
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDAL 237
++ER G F+ V P + +V +SS+ + +L+ V + +E F AQ LIE+KG
Sbjct: 587 NVERSTGITFKRVGIPSLMNVAKSSSADAIKSLDTVPADVIEHFKEYAQELIEKKGALTA 646
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AA + RSL+N E G++T+ L + RS+ L +
Sbjct: 647 LAAALAHISGATSIKQRSLLNMEAGYMTITLKSSVPIHNLSYAWRSIKEQLGE---DVDS 703
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNT----ISKITKLPALQD-----D 348
+I ++ ++ D G FD+ E +L + Q +T + T+LP +Q+ D
Sbjct: 704 KIHRMCLLKDS--MGVCFDVRSE---DLQSMQESWSDTRRWQFTITTELPEIQESERSFD 758
Query: 349 GPSSDNYG 356
GP + ++G
Sbjct: 759 GPRNRSFG 766
>gi|147899364|ref|NP_001082035.1| RNA helicase II/Gu [Xenopus laevis]
gi|16975508|gb|AAG22819.2|AF302423_1 RNA helicase II/Gu [Xenopus laevis]
Length = 759
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 127/354 (35%), Positives = 195/354 (55%), Gaps = 15/354 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P W+ +++KY+ IDL+G++ +K A ++ AI T + K +L DL+
Sbjct: 365 LLFSATCPDWMYNMAKKYMRKQFEKIDLIGHRSQKAATTVEHLAIECTRSQKAAVLGDLV 424
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIAS-EALHGDISQHQRERTLNGFRQGKFTV 117
VY+ GKTI+F +K +A ++ + S+ S ++LHGD+ Q +RE L GFRQG F V
Sbjct: 425 QVYSGSHGKTIIFCDSKLEAHTLATSCGSLKQSAKSLHGDLQQKEREVVLKGFRQGTFEV 484
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
L+AT+VAARGLDIP VDL++ Y P + + +VHRSGRTGRAG+ G I ++ +R +R
Sbjct: 485 LIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCISLYEPWERHYLR 544
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDAL 237
++ER G F+ V P + +V +SS+ + +L+ V + +E F AQ LIE+KG
Sbjct: 545 NVERSTGITFKRVGVPSLLNVAKSSSADAIKSLDTVPADVIEHFKEYAQELIEQKGALTA 604
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AA + RSL+N E G T+ L + +S+ L D D
Sbjct: 605 IAAALAHISGATSIKQRSLLNMEAGCDTITLKSSVPIHSLSYAWQSIKEQLGD------D 658
Query: 298 EIGKIH---IIADDRVQGAVFDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
KIH ++ D G FD+ E + + + + T+LPA+Q+
Sbjct: 659 VDSKIHRMCLLKDS--MGVCFDVRSENLESMQERWTDTKQWQFTVATELPAIQE 710
>gi|301108607|ref|XP_002903385.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262097757|gb|EEY55809.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 666
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 136/406 (33%), Positives = 209/406 (51%), Gaps = 21/406 (5%)
Query: 23 LNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS 82
+NIDLVG+ D + + AI + + +L +++ ++A G+T+VFT+TK++ADE++
Sbjct: 261 VNIDLVGDNDNHVPATVAHKAILAPSRDRIQVLENVLRLHAHDGQTLVFTETKQEADEIA 320
Query: 83 LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP 142
+L A ALHGD+SQ R T+NGFR G LV TD+AARGLDI NV+L++ Y LP
Sbjct: 321 NSLPGQDA-RALHGDLSQGMRTSTMNGFRNGHVKTLVCTDIAARGLDIANVELVVQYRLP 379
Query: 143 NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS 202
+D E+FVHR+GRTGRAG+ GT I+ F + V ER KF +PP E ++ +
Sbjct: 380 SDKESFVHRAGRTGRAGRSGTNIVFFDRNDTSDVLDFERRYKFKFAHAAPPRPEQMMTGA 439
Query: 203 AEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGF-SRPPSSRSLINHEQ 261
E V L+ + + + F AQ +IE++G L+AALA L GF S+ +S S++
Sbjct: 440 LEDVNKQLSSLPKANAQLFDEAAQAMIEQQGPGVLSAALALLCGFDSKKLTSLSMLTGRH 499
Query: 262 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPE-- 319
T+++ G +AR + L+ D IH + ++ VFD+P+
Sbjct: 500 RMQTVEV-------EGVQNARDLNRLLASFMDDRVD----IHPVEGGKL---VFDIPQGK 545
Query: 320 -EIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSR-FSRGG 376
E + L P +++ + P L D +N + SR FS
Sbjct: 546 IEALQAHLTASSPDEEVSVTTAVEFPRLVVDRAGRNNNNFGGRFGQRGGRNNSRGFSNNR 605
Query: 377 ARGGARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNNRG 422
R GG+ G + +W +D DG + GGR F S ++G
Sbjct: 606 FGNNRREGGNNRFGGNKGDNNWKRNDRDGGNRRNGGRDFDSSFSKG 651
>gi|149511217|ref|XP_001519340.1| PREDICTED: nucleolar RNA helicase 2 [Ornithorhynchus anatinus]
Length = 757
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 125/356 (35%), Positives = 196/356 (55%), Gaps = 20/356 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ +DL+G + +K A ++ AI + ++ +I
Sbjct: 358 LLFSATCPHWVYDVAKKYMKVKYEQVDLIGKKTQKTAMTVEHLAIKCHWAQRAAVIGTVI 417
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TIVF +TK++A E+SL+ +++LHGDI Q QRE TL GFR G F VL
Sbjct: 418 QVYSGTHGRTIVFCRTKKEATELSLSPAIKQDAQSLHGDIPQKQREITLKGFRSGAFGVL 477
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G + + + + +
Sbjct: 478 VATNVAARGLDIPEVDLVVQSSPPEDVESYIHRSGRTGRAGRTGICVCFYQAKEEYQLSQ 537
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALA 238
+E+ G F+ + P +V+++S++ V+ +L+ + ++ +F A+ LIEEKG
Sbjct: 538 VEQKAGITFKRIGVPTTSEVVKASSKDVLRSLDSIPLHAINYFKQPARELIEEKGAVDAL 597
Query: 239 AALAQLSGFSRPPSSRSLINHEQGWVTLQL---TRDSAFSRGFMSARSVMGFLSDVYPTA 295
AA + RSLIN G+VT+ L S + S + +G
Sbjct: 598 AAAIAVISGVTSVEQRSLINSAVGFVTMTLQCSVEMHTLSYAWRSLKEQLG--------- 648
Query: 296 ADEI-GKI-HIIADDRVQGAVFDLPEEIAKELLNKQIPPGN--TISKITKLPALQD 347
+EI GK+ H+ G FD+P+ EL+ Q +S T+LP L++
Sbjct: 649 -EEIEGKVNHMCLLKGKMGVCFDVPKATV-ELIQDQWKDTRRWQLSVATELPELEE 702
>gi|443708232|gb|ELU03439.1| hypothetical protein CAPTEDRAFT_52524, partial [Capitella teleta]
Length = 707
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 122/351 (34%), Positives = 197/351 (56%), Gaps = 10/351 (2%)
Query: 1 MLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSATMP WV+K S+KY+ N NIDLVG + + + ++ A+ + + D++
Sbjct: 304 LLFSATMPDWVQKTSQKYMKKNTRNIDLVGRERVRTSITVQHLALQCNYQDRAATVGDVL 363
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ +VF +TKRDAD+++++ I + LHGDI Q +R+ L FR+G++ L
Sbjct: 364 RVYSGSQGRAMVFCETKRDADDLAVSPCIGIETHVLHGDIPQEKRQLVLQKFREGRYKCL 423
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
+ TDVAARGLDIP VDL++ P D ++++HRSGRTGRAG++GT +L + V+
Sbjct: 424 ITTDVAARGLDIPEVDLVVQCCPPKDVDSYIHRSGRTGRAGRQGTCVLFYKYGSEYEVQR 483
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALA 238
+ER G KF V P ++++++A L V E++ F +A+ LIEEKG
Sbjct: 484 VERTAGFKFRRVGAPSRNEIIDAAARDARLVLATVPEETLGHFRESAKLLIEEKGGVDAV 543
Query: 239 AALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAF-SRGFMSARSVMGFLSDVYPTAAD 297
AA + + SRSL+ ++G+ T T + S G+ + S++ D
Sbjct: 544 AAALAVITGNTEMKSRSLLTSKEGFTTYVFTSTNEIKSMGYFWSAMERQLPSEI----KD 599
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNK-QIPPGNTISKITKLPALQD 347
++ + D G VFDLP ++ + N Q +T++ T+LP ++D
Sbjct: 600 KVRAPRMQKDQ--MGCVFDLPSDVDALVENYWQDSEYHTLNVATELPEMED 648
>gi|221057271|ref|XP_002259773.1| ATP-dependent helicase [Plasmodium knowlesi strain H]
gi|193809845|emb|CAQ40549.1| ATP-dependent helicase, putative [Plasmodium knowlesi strain H]
Length = 722
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 133/360 (36%), Positives = 197/360 (54%), Gaps = 39/360 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT--ATSKRTILSDL 58
+L+SAT PSWVK +S +Y+ NP ID+V + + K ++ IK AI T K +L D+
Sbjct: 336 LLYSATTPSWVKDISSRYMKNPFFIDVVDSSN-KTSKNIKHIAIKTPYDIKEKALLLEDI 394
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSIIASE---------ALHGDISQHQRERTLNG 109
I V + GG+ I+FT+TK +AD I+ SE LHG+I+Q RE T+
Sbjct: 395 ILVKSNGGQVIIFTRTKLEAD--------ILCSEGSFKSLSFAVLHGNIAQTTREHTMQR 446
Query: 110 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 169
FRQG F +L+ATD+AARGLDI NVDL+I PN E ++HR+GRTGRA K+G ++++F+
Sbjct: 447 FRQGMFQILIATDIAARGLDISNVDLVIQCFPPNYAEIYIHRAGRTGRANKKGVSVVLFS 506
Query: 170 SSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLI 229
S ++ + +E++ G KF P EDV S++ + V+P + FF TA LI
Sbjct: 507 SEDKQDLIKIEKNCGIKFSIEQLPNNEDVFTSASTMASKKIENVNPSVLPFFHKTASELI 566
Query: 230 EE------KGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARS 283
E+ T+ +A LA +S RSLIN +TL SR + +
Sbjct: 567 EKCTQLQMDQTELVARCLALISK-KEQIKKRSLINGLSETLTLSFINK---SRKWKNEDD 622
Query: 284 VMGFL----SDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKI 339
++ ++ +D+ ++I +I I DR + FDL E IA EL I N +SK+
Sbjct: 623 IIYWVNRISNDLNVNTFNKILQIKIDTKDRF-SSYFDLNENIA-ELF---IQNFNNMSKV 677
>gi|156094360|ref|XP_001613217.1| ATP-dependent helicase [Plasmodium vivax Sal-1]
gi|148802091|gb|EDL43490.1| ATP-dependent helicase, putative [Plasmodium vivax]
Length = 720
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 132/360 (36%), Positives = 197/360 (54%), Gaps = 39/360 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT--ATSKRTILSDL 58
+L+SAT PSW+K +S KY+ NP ID+V + + K ++ IK AI T K +L D+
Sbjct: 334 LLYSATTPSWIKDISSKYMKNPFFIDVVDSSN-KTSKNIKHIAIKTPYDIKEKALLLEDI 392
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSIIASE---------ALHGDISQHQRERTLNG 109
I V + GG+ I+FT+TK +AD I+ SE LHG+I+Q RE T+
Sbjct: 393 ILVKSNGGQVIIFTRTKLEAD--------ILCSEGSFKSLSFAVLHGNIAQTTREHTMQR 444
Query: 110 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 169
FRQG F +L+ATD+AARGLDI NVDL+I PN E ++HR+GRTGRA K+G ++++F+
Sbjct: 445 FRQGMFQILIATDIAARGLDISNVDLVIQCFPPNYAEIYIHRAGRTGRANKKGISVVLFS 504
Query: 170 SSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLI 229
+ ++ + +E++ G KF P EDV S++ + V+P + FF TA LI
Sbjct: 505 TEDKQDLVKIEKNCGIKFSIEQLPNNEDVFTSASTMASKKIQNVNPSVLPFFHKTASELI 564
Query: 230 EE------KGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARS 283
E+ T+ +A LA +S RSLIN +TL SR + +
Sbjct: 565 EKCTQLQMDQTELVARCLAIISK-KEHIKKRSLINGLSETLTLSFVNK---SRKWKNEDD 620
Query: 284 VMGFL----SDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKI 339
++ ++ +D+ ++I +I I DR + FDL E IA EL I N +SK+
Sbjct: 621 IIYWVNKISNDLNVNTFNKILQIKIDTRDRF-SSYFDLNENIA-ELF---IQNFNNMSKV 675
>gi|71409597|ref|XP_807135.1| nucleolar RNA helicase II [Trypanosoma cruzi strain CL Brener]
gi|70871069|gb|EAN85284.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
Length = 633
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 123/350 (35%), Positives = 193/350 (55%), Gaps = 17/350 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WV S ++ N ID+VG + A IK Y + +L+DL+
Sbjct: 243 LLFSATVPEWVHTCS--FIPRNKEFIDMVGQGTMRAANTIKFYRRKCHFSEVSCMLADLV 300
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ + G+T+VFT TK++ ++S+ T + S+ LHGD+ Q QRE T+ FR KF+VL
Sbjct: 301 KVYSGRHGRTLVFTNTKKECHDLSINNTKL-DSQCLHGDMQQEQRESTMKSFRDNKFSVL 359
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
+ATDVAARGLD+P VDL+I P D + F+HR+GRTGRAG++G +L+ V
Sbjct: 360 IATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLHQPKDEYIVER 419
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEK-GTDAL 237
+ER KFE + P +++L + A L V + F A L+++ T+ L
Sbjct: 420 IERHAKIKFEVLPAPTRDEILRAVARDAAEDLARVERSATNLFMEQAAELLKDADATEIL 479
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSA--RSVMGFLSDVYPTA 295
A+A+A +SG++ + R LI +G VT+Q+ + R+ +G +++
Sbjct: 480 ASAIAVMSGYTSSITRRGLITGAKGSVTIQMLGQRTLPIPVFCSILRNSLG--DNLFTRC 537
Query: 296 ADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPAL 345
D I ++ + G VFD+PEE+A ++L+ I G + I LP +
Sbjct: 538 RD----ITLLQES--PGCVFDVPEEVADQILSAPI-RGMQLGVIETLPPI 580
>gi|72389634|ref|XP_845112.1| nucleolar RNA helicase II [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62176655|gb|AAX70758.1| nucleolar RNA helicase II, putative [Trypanosoma brucei]
gi|62360172|gb|AAX80591.1| nucleolar RNA helicase II, putative [Trypanosoma brucei]
gi|70801646|gb|AAZ11553.1| nucleolar RNA helicase II, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261328479|emb|CBH11456.1| nucleolar RNA helicase Gu, putative [Trypanosoma brucei gambiense
DAL972]
Length = 632
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 195/349 (55%), Gaps = 15/349 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+P WV S N ID+VG + A I+ Y ++L+DL+
Sbjct: 235 LLFSATVPDWVHTCSF-ISKNKKFIDMVGQGAMRAANTIRFYRRKCGFAEVSSMLADLVK 293
Query: 61 VYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
VY+ + G+T++FT TK+D ++S+ T + S+ LHGD+ Q QRE T+ FR KF+VL+
Sbjct: 294 VYSGRHGRTLIFTNTKKDCHDLSINNTKL-DSQCLHGDMQQEQRESTMKSFRDNKFSVLI 352
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+P VDL+I P D + F+HR+GRTGRAG++G +L+ V +
Sbjct: 353 ATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLHQPKDEYVVERI 412
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALA 238
ER KFE + P E++L++ A + V + F A L+++ T+ LA
Sbjct: 413 ERHAKIKFEVLPAPTREEILKAVARDAAEDMARVERSATNLFMDQAAELLKDADPTEILA 472
Query: 239 AALAQLSGFSRPPSSRSLINHEQGWVTLQ-LTRDSAFSRGFMSA-RSVMGFLSDVYPTAA 296
+A+A +SG++ + R LI+ +G T+Q L + S + F S R+ +G +++
Sbjct: 473 SAIAVMSGYTSSITKRGLISGARGSATVQMLGQRSLPTHVFCSILRNNLG--DELFMRCR 530
Query: 297 DEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPAL 345
D I ++ D G VFD+PE++ +LN + G +S I LP +
Sbjct: 531 D----ITLLQD--APGCVFDVPEDVVDRILNTPV-QGMELSVIETLPPI 572
>gi|297565173|ref|YP_003684145.1| DEAD/DEAH box helicase [Meiothermus silvanus DSM 9946]
gi|296849622|gb|ADH62637.1| DEAD/DEAH box helicase domain protein [Meiothermus silvanus DSM
9946]
Length = 538
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 111/270 (41%), Positives = 170/270 (62%), Gaps = 10/270 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
LFSAT+PSW K+L+ +Y+ +P+++++V ++ E A+ ++ L+D+I
Sbjct: 188 FLFSATVPSWAKRLAERYMRDPVHVNVVKDEQVSYEE----LALQAPLQTRLNTLTDVIF 243
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
YA +TIVFT+TK + DE++ L + I + +HGD+SQ +RER L FR+G TVLV
Sbjct: 244 AYAPE-RTIVFTRTKAEVDELATGLQARGIGAAPIHGDMSQRERERVLGRFREGTDTVLV 302
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDIP VDL++H+ LP E + HRSGRTGRAG+ G IL + +RR + +L
Sbjct: 303 ATDVAARGLDIPEVDLVVHFRLPEKAEPYQHRSGRTGRAGRSGRVILFYGPRERRELENL 362
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
E V +F+ V+PP E+V E+ ++++A L P + A RL+ ++ +A+A
Sbjct: 363 EYAVKRRFKRVNPPTPEEVQEAKWQRLLARLAKQPPHERAPWRELADRLVNDR--EAIAG 420
Query: 240 ALAQLSGFSRPPSSRSLINHEQGWVTLQLT 269
LA + G P +SLI E+G VT++L+
Sbjct: 421 LLAFMLGTVSAP--KSLITGEEGLVTVKLS 448
>gi|343470250|emb|CCD17000.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 633
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 121/351 (34%), Positives = 191/351 (54%), Gaps = 19/351 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+P WV S N ID+VG + + A IK + + ++L+DL+
Sbjct: 236 LLFSATVPDWVHTCSF-ISKNKKFIDMVGQGEMRAANTIKFFRRKCGFSEVSSMLADLVK 294
Query: 61 VYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
VY+ + G+T++FT TK+D ++S+ T + S+ LHGD+ Q QRE T+ FR+ F+VL+
Sbjct: 295 VYSGRHGRTLIFTNTKKDCHDLSINNTKL-DSQCLHGDMQQDQRESTMKSFRENMFSVLI 353
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+P VDL+I P+D + F+HR+GRTGRAG++G +L+ V +
Sbjct: 354 ATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLHQPRDEHIVERI 413
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALA 238
ER KFE + P E++L++ A + V + F A L+++ T+ LA
Sbjct: 414 ERHANIKFEVLPAPTREEILKAVARDAAEDMARVERSATNLFMEQAAELLKDADPTEILA 473
Query: 239 AALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE 298
+A+A +SG++ + R LI +G T+Q+ + + F S + DE
Sbjct: 474 SAIAVMSGYTSSITKRGLITGAKGSATIQMLGQRSL--------PIPVFCSILRNNLGDE 525
Query: 299 I----GKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPAL 345
+ I ++ D G VFD+PEE + +L + G +S I LP +
Sbjct: 526 LFTRCRDITLLQD--APGCVFDVPEEFVERILATPV-RGMELSVIESLPPI 573
>gi|342181264|emb|CCC90744.1| putative nucleolar RNA helicase II [Trypanosoma congolense IL3000]
Length = 633
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 121/351 (34%), Positives = 191/351 (54%), Gaps = 19/351 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+P WV S N ID+VG + + A IK + + ++L+DL+
Sbjct: 236 LLFSATVPDWVHTCSF-ISKNKKFIDMVGQGEMRAANTIKFFRRKCGFSEVSSMLADLVK 294
Query: 61 VYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
VY+ + G+T++FT TK+D ++S+ T + S+ LHGD+ Q QRE T+ FR+ F+VL+
Sbjct: 295 VYSGRHGRTLIFTNTKKDCHDLSINNTKL-DSQCLHGDMQQDQRESTMKSFRENMFSVLI 353
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+P VDL+I P+D + F+HR+GRTGRAG++G +L+ V +
Sbjct: 354 ATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLHQPRDEHIVERI 413
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALA 238
ER KFE + P E++L++ A + V + F A L+++ T+ LA
Sbjct: 414 ERHANIKFEVLPAPTREEILKAVARDAAEDMARVERSATNLFMEQAAELLKDADPTEILA 473
Query: 239 AALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE 298
+A+A +SG++ + R LI +G T+Q+ + + F S + DE
Sbjct: 474 SAIAVMSGYTSSITKRGLITGAKGSATIQMLGQRSL--------PIPVFCSILRNNLGDE 525
Query: 299 I----GKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPAL 345
+ I ++ D G VFD+PEE + +L + G +S I LP +
Sbjct: 526 LFTRCRDITLLQD--APGCVFDVPEEFVERILATPV-RGMELSVIESLPPI 573
>gi|407954645|dbj|BAM48570.1| malignant cell derived RNA helicase [Homo sapiens]
Length = 731
Score = 197 bits (502), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 133/359 (37%), Positives = 205/359 (57%), Gaps = 16/359 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + + LVG +K A ++ AI + + ++ D++
Sbjct: 323 LLFSATCPQWVYKVAKKYMKSRYEQVALVGKMTQKAATPVEHLAIQCHWSQRPAVIGDVL 382
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 383 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 442
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLD P VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 443 VATNVAARGLDNPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 502
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L SV + +AQRLIEEKG DAL
Sbjct: 503 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSL-----ASVSYAAVSAQRLIEEKGAVDAL 557
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + MSA + + A
Sbjct: 558 AAALAHISGAS-SFEPRSLITSDKGFVTMTL---ESLEEYRMSAVAWKELNRKLSSNAVS 613
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+I ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 614 QITRMCLLKG--IWGVCFDVPTTESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 670
>gi|414590005|tpg|DAA40576.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 704
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 133/355 (37%), Positives = 191/355 (53%), Gaps = 20/355 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WV KLS ++L + +DLVGN+ K + +K A+ ++ ++ D+I
Sbjct: 312 LLFSATLPDWVNKLSMRFLKVDRKTVDLVGNEKLKASASVKHLALPCNKAARAQLIPDII 371
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y+ GG+TI+FT+TK A E+S I S ALHGD+ Q QRE L GFR GKF VLV
Sbjct: 372 RCYSHGGRTIIFTETKDSASELS---GLIPGSRALHGDVVQAQREVILAGFRSGKFQVLV 428
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
AT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A++++ + +V L
Sbjct: 429 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYEPRYKYSVSRL 488
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
ER+ G KFE +S P DV +S+ + + V + F A++L+ A
Sbjct: 489 ERESGVKFEHISAPQPTDVAQSAGSEAADAIASVSDSVIPVFRQQAEQLLSSSTLSAADL 548
Query: 240 ALAQLS---GFSRPPSSRSLINHEQGWVTLQL-TRDSAFSRGFMSARSVMGFLSDVYP-- 293
L+ G++ RSL++ + + TL L T +S GF L P
Sbjct: 549 LAKALAKAVGYTD-IKKRSLLSSMEDYATLHLQTGRQMWSPGF-----AFTILKRFMPEE 602
Query: 294 TAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
AD G + AD G VFD+P ++ + TI ++ +LP LQ+
Sbjct: 603 KLADVKGAT-LTADG--TGVVFDVPAADVEDYIQASENAAQVTIDEVQQLPPLQE 654
>gi|298712936|emb|CBJ26838.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 694
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 193/330 (58%), Gaps = 16/330 (4%)
Query: 1 MLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSATMP WV K+ ++Y+ ++ + IDLV K ++ ++ I TS+ + ++D++
Sbjct: 333 LLFSATMPPWVDKVVKEYMKEDRVFIDLVKEGTVKASKDVEHIGIPCHWTSRSSTINDIV 392
Query: 60 TVYAKGG--KTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
+VY GG +TIVF TKRD +E+ + +ALHGDI+Q RE TL GF++G F V
Sbjct: 393 SVYGAGGNKRTIVFCTTKRDCNELCMDPKMTYDCQALHGDITQANRESTLAGFKKGSFKV 452
Query: 118 LVATDVAARGLDIPNVDLIIHYELPN------DPETFVHRSGRTGRAGKEGTAILMFTSS 171
LVATDVAARGLD+ VDL+++ E P D E++VHRSGRTGRAG++G I ++T
Sbjct: 453 LVATDVAARGLDM-IVDLVLNAEPPTHQSGRVDTESYVHRSGRTGRAGRKGMCITLYTPR 511
Query: 172 QRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEE 231
QR + +ER +G F + P +D++ +SA + + V ++ + A++LI+E
Sbjct: 512 QRGGLGEIERHIGNDFAWRGAPQPDDIVNASAGAAIDDIRAVDDSVIDLYKTAAEQLIDE 571
Query: 232 KG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSD 290
KG +AL AALA ++G + RSL+++ +G VT+ D ++ LS
Sbjct: 572 KGALNALCAALACMTGRTEAMPVRSLLSNSEGHVTIIFRSDHPIEYMAYCWTAIRKVLSS 631
Query: 291 VYPTAADEIGKIHIIADDRVQGAVFDLPEE 320
AAD I + + D VFD+PEE
Sbjct: 632 ---AAADNIRGMQLSEDG--LACVFDVPEE 656
>gi|115470561|ref|NP_001058879.1| Os07g0143700 [Oryza sativa Japonica Group]
gi|113610415|dbj|BAF20793.1| Os07g0143700, partial [Oryza sativa Japonica Group]
Length = 292
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 95/150 (63%), Positives = 117/150 (78%), Gaps = 2/150 (1%)
Query: 53 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQ 112
T+ S L +A GGK IVFTQTKR+AD ++ A+ A +ALHGDISQ+QRERTL+GFR
Sbjct: 6 TLFSTLPQEHANGGKCIVFTQTKREADRLAYAMGRSYACQALHGDISQNQRERTLSGFRD 65
Query: 113 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 172
G+F +LVATDVAARGLDIPNVDL+IHYELPN E FVHRSGRT RAGK+G+AIL++T+ Q
Sbjct: 66 GRFNILVATDVAARGLDIPNVDLVIHYELPNTSELFVHRSGRTARAGKKGSAILIYTNDQ 125
Query: 173 RRTVRSLERDVGCKFEFVSPPVVEDVLESS 202
R VR +E+D+GCK F P +E E+S
Sbjct: 126 ARAVRIIEQDIGCK--FTELPKIEVADEAS 153
>gi|414886328|tpg|DAA62342.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 707
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 195/363 (53%), Gaps = 22/363 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WV KLS ++L + +DLVGN+ K + +K A+ ++ ++ D+I
Sbjct: 310 LLFSATLPEWVNKLSMRFLKVDRKTVDLVGNEKLKASASVKHLALPCNKAARAQVIPDII 369
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y+ GG+TI+FT+TK A E+S I S ALHGD++Q QRE L GFR GKF VLV
Sbjct: 370 RCYSHGGRTIIFTETKDSASELS---GLIHGSRALHGDVAQAQREVILAGFRSGKFQVLV 426
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
AT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A++++ + +V L
Sbjct: 427 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYEPRYKHSVSRL 486
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
ER+ G KFE +S P DV +S+ + + V + F A++L+ A
Sbjct: 487 ERESGVKFEHISAPQPTDVAQSAGSEAADAIASVSDSVIPIFRQQAEQLLSSSSLSAADL 546
Query: 240 ALAQLS---GFSRPPSSRSLINHEQGWVTLQL-TRDSAFSRGFMSARSVMGFLSDVYPTA 295
L+ G++ RSL++ + + TL L T +S GF L P
Sbjct: 547 LAKALAKAVGYTD-IKKRSLLSSLEDYSTLHLQTGRPMWSPGF-----AFTILKRFMPE- 599
Query: 296 ADEIGKIH---IIADDRVQGAVFDLPEEIAKELLNKQIPPGN-TISKITKLPALQDDGPS 351
D++ + + AD G VFD+P ++ + TI ++ +LP LQ+ S
Sbjct: 600 -DKLADVKGATLTADG--TGVVFDVPAADVEDYIQASESAAQVTIDEVKQLPPLQEKDQS 656
Query: 352 SDN 354
N
Sbjct: 657 RGN 659
>gi|414590004|tpg|DAA40575.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 671
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 133/355 (37%), Positives = 191/355 (53%), Gaps = 20/355 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WV KLS ++L + +DLVGN+ K + +K A+ ++ ++ D+I
Sbjct: 312 LLFSATLPDWVNKLSMRFLKVDRKTVDLVGNEKLKASASVKHLALPCNKAARAQLIPDII 371
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y+ GG+TI+FT+TK A E+S I S ALHGD+ Q QRE L GFR GKF VLV
Sbjct: 372 RCYSHGGRTIIFTETKDSASELS---GLIPGSRALHGDVVQAQREVILAGFRSGKFQVLV 428
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
AT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A++++ + +V L
Sbjct: 429 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYEPRYKYSVSRL 488
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
ER+ G KFE +S P DV +S+ + + V + F A++L+ A
Sbjct: 489 ERESGVKFEHISAPQPTDVAQSAGSEAADAIASVSDSVIPVFRQQAEQLLSSSTLSAADL 548
Query: 240 ALAQLS---GFSRPPSSRSLINHEQGWVTLQL-TRDSAFSRGFMSARSVMGFLSDVYP-- 293
L+ G++ RSL++ + + TL L T +S GF L P
Sbjct: 549 LAKALAKAVGYTD-IKKRSLLSSMEDYATLHLQTGRQMWSPGF-----AFTILKRFMPEE 602
Query: 294 TAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
AD G + AD G VFD+P ++ + TI ++ +LP LQ+
Sbjct: 603 KLADVKGAT-LTADG--TGVVFDVPAADVEDYIQASENAAQVTIDEVQQLPPLQE 654
>gi|452824703|gb|EME31704.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 758
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 192/344 (55%), Gaps = 26/344 (7%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAIST--TATSKRTILSDL 58
+LFSAT+P WV++L++ +NP+ +D +GN+D K + ++ A+ T S++ IL +
Sbjct: 377 LLFSATIPPWVQELAKSNKNNPIIVDAIGNKDTKTSTTVEHIALRVPPTELSRKLILESV 436
Query: 59 ITVYA---KGGKTIVFTQTKRDADEVSLALTSII---ASEALHGDISQHQRERTLNGFRQ 112
I+VY+ + IVF +TK + D SL + I A++ALHGDI+Q QRE TL+ FR+
Sbjct: 437 ISVYSAEMTNFRCIVFARTKAEVD--SLVSSGRIHNGAAQALHGDITQKQREITLSKFRE 494
Query: 113 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 172
G F VL+ATDVAARGLDI VDL+I Y +P D + ++HR+GRTGRAG++GT I+++T +
Sbjct: 495 GSFQVLIATDVAARGLDINGVDLVIQYRVPEDIDMYIHRAGRTGRAGRQGTCIILYTDEE 554
Query: 173 RRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEK 232
R + +E +F SPP ++ V+E+ A + V + VE P + IE
Sbjct: 555 RNKLTLMENVCKIRFRLESPPSIQQVIETKANGFLRASQAVEGKWVEPLIPVVKEYIESL 614
Query: 233 GTD----------ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSAR 282
+ LA+ LA G P S+++ E+ + + + + ++ R
Sbjct: 615 HIEGEEREKQFPFVLASLLAVAMGQLNMPQV-SILSGEENMCPILVKSKTVLTVSYI-VR 672
Query: 283 SVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELL 326
V L D +G + I AD ++ AVFDL +IA+ +
Sbjct: 673 IVSRLLED--KGFESRVGLVSICADTKM--AVFDLKNDIAERFV 712
>gi|384496820|gb|EIE87311.1| hypothetical protein RO3G_12022 [Rhizopus delemar RA 99-880]
Length = 665
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 122/358 (34%), Positives = 193/358 (53%), Gaps = 17/358 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P V + +++L IDL+GN + I+ A+ ++ ++ I+ D++
Sbjct: 258 LLFSATVPESVMQTIQRFLKEDYERIDLIGNAKNRTNTNIRHIAMPSSYHTRADIIGDVV 317
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
VY + G T++F TK DA+E+ + LHGDI+Q RE T+ FR+GK+ +V
Sbjct: 318 NVYGRSGLTVIFCATKADANELGAHDKIKQDAAVLHGDIAQASREATMKAFREGKYKCIV 377
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
TDV ARGLDIP VDL+I+ + P DPET+VHRSGRTGRAG+ G + + ++ + +
Sbjct: 378 CTDVLARGLDIPQVDLVINCQPPKDPETYVHRSGRTGRAGRSGVCVTFYKPAEEGLLSYI 437
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
+ G +FE +S P ED++E++ E +++ V P+ + FF AQ LI++ G A
Sbjct: 438 SKRTGVQFEQLSAPRPEDIIEATTEDAFKSIDLVKPDVLPFFEKPAQELIDKHGALNAVA 497
Query: 240 ALAQ-LSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAA-D 297
A ++G+ + SRSL+ ++G TL L S V +S YP D
Sbjct: 498 AALAFMTGYHQGVPSRSLLTSQEGQTTLLL----QLSYTIQHPGYVRNIISREYPELGYD 553
Query: 298 EIGKIHIIADDRVQGAVFDLPE---EIAKE----LLNKQIPPGN-TISKITKLPALQD 347
++ + D G VFD+ E+ ++ L+ + N T+S LP LQD
Sbjct: 554 DVKGWRMTEDS--MGVVFDIKSSRCEVKEDGEVLLVGRPWTAHNITLSAPKSLPTLQD 609
>gi|260830758|ref|XP_002610327.1| hypothetical protein BRAFLDRAFT_144535 [Branchiostoma floridae]
gi|229295692|gb|EEN66337.1| hypothetical protein BRAFLDRAFT_144535 [Branchiostoma floridae]
Length = 655
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/275 (37%), Positives = 169/275 (61%), Gaps = 6/275 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+ FSAT+P+WV + +RKY+ P ++D++G + + A ++ AI ++ +++D+I
Sbjct: 277 LFFSATLPNWVHEAARKYMKAEPKHVDMIGTEQNRSATTVEHLAIRCGWQARAPVIADII 336
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEA--LHGDISQHQRERTLNGFRQGKFT 116
T+Y+ + G+ +VF +TK++A++ L L ++ EA LHGDI Q QRE TL FR G
Sbjct: 337 TMYSGQHGRAMVFCETKKEANQ--LVLEGVLKQEAQVLHGDIPQAQRELTLKSFRDGNIQ 394
Query: 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 176
VLVATDVAARGLDIP VDL++ E P+D ++++HRSGRTGRAG+ G + + ++ + +
Sbjct: 395 VLVATDVAARGLDIPEVDLVVQCEPPSDVDSYIHRSGRTGRAGRTGVCVCFYKPNREQDL 454
Query: 177 RSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
R +ER G KF ++ P +D+++++A + V + + F A++LI EKG
Sbjct: 455 RFVERRAGIKFRQINAPQPDDIVKAAANDSARAIEEVPDKMLTHFQEAAEKLIAEKGAVN 514
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRD 271
AA + S RSL+N ++G+ T+ D
Sbjct: 515 AVAAALAVMSGSSEIKKRSLLNADEGFTTMLFHTD 549
>gi|325188903|emb|CCA23433.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 684
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 139/430 (32%), Positives = 216/430 (50%), Gaps = 41/430 (9%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+++SAT P WV L++KYL + + IDLVG+++ + + AI+ + + L ++
Sbjct: 259 VMWSATFPKWVTSLTKKYLKDAVTIDLVGSEEAHVPTTVSHKAINVPSNYRVVALQRILE 318
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
YA G+++VFT+TK +A+E++ L +ALHGD+SQ R T+ FR+G L
Sbjct: 319 KYASQGQSLVFTETKHEANEIANGLEGCNV-QALHGDLSQGVRASTMQNFRKGLVKTLAC 377
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TD+AARGLDI NVDL++HY LPND E FVHR+GRTGRAGK GT+I+ F + + R ++ LE
Sbjct: 378 TDIAARGLDIANVDLVVHYRLPNDRENFVHRAGRTGRAGKTGTSIVFFENQEYRDIKDLE 437
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
+F + P +D ++ ++V L V +S +F + A +L E G +AA
Sbjct: 438 NRFKIQFAHAATPDADDFRDTKVKEVTKRLQKVSDKSSDFLSEEATKLYEAHGIRIFSAA 497
Query: 241 LAQLSGFSRPPS-SRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFL-SDVYPTAADE 298
L L GF + + S S++ + +T+Q+ G S V L S + +A +
Sbjct: 498 LNLLCGFEKGNTLSVSMLTGKSNMLTVQID-------GLTSVSQVSELLQSAIGNSAQRD 550
Query: 299 IGKIHIIADDRVQGAVFDLPEEIAKEL---LNKQIPPGNTISKITKLPALQDDGPSSDNY 355
I ++ + + D+P +L L G T+S++T+LP +
Sbjct: 551 IMSVN-------KKFIVDIPYSSYAQLQEALQSNNVDGVTVSRVTELPHI---------- 593
Query: 356 GRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSF 415
+ GS S GG R G S G + G S R R
Sbjct: 594 ---------TLPLGSERSFGGGRYG--DNSSGYGGGRYGGGNSGYGGGGRGSKDRNFRRN 642
Query: 416 RSGNNRGSRF 425
SG++R SRF
Sbjct: 643 DSGDSRNSRF 652
>gi|313679216|ref|YP_004056955.1| ATP-dependent RNA helicase dbpa [Oceanithermus profundus DSM 14977]
gi|313151931|gb|ADR35782.1| ATP-dependent RNA helicase DbpA [Oceanithermus profundus DSM 14977]
Length = 528
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 112/269 (41%), Positives = 166/269 (61%), Gaps = 8/269 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSAT+P W K+L ++L P +++V QDE+++ + AI + +++ + LSDL+
Sbjct: 187 LMFSATLPGWAKRLVGRHLKEPTVVNVV--QDEEVS--YREIAIEASPSARMSALSDLLH 242
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVFT+TK++ADEV+ ALT+ A+EA+HGD++Q QRER++ FR G+ VLV
Sbjct: 243 AHGPE-RAIVFTRTKKEADEVARALTARGHAAEAVHGDLNQTQRERSVGRFRSGQVGVLV 301
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDIP VDL++H LP E++ HRSGRTGRAG+ GT I+ +S +RR + L
Sbjct: 302 ATDVAARGLDIPEVDLVVHLRLPERAESYQHRSGRTGRAGRSGTVIIFHSSRERRELGQL 361
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
ER VG KFE P E+V ++ ++ E + AQ IE + D +
Sbjct: 362 ERAVGRKFEHGRAPAPEEVQQAKIAGLLRRAAAQSEEDRAVWREVAQAWIERE--DVESL 419
Query: 240 ALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
A P RSL+ ++GW TL+L
Sbjct: 420 AGLLAMLLGGAPKPRSLLTGDEGWRTLEL 448
>gi|297787958|ref|XP_002862173.1| hypothetical protein ARALYDRAFT_333427 [Arabidopsis lyrata subsp.
lyrata]
gi|297307387|gb|EFH38431.1| hypothetical protein ARALYDRAFT_333427 [Arabidopsis lyrata subsp.
lyrata]
Length = 283
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 93/142 (65%), Positives = 112/142 (78%)
Query: 55 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGK 114
++ L+ +AKGGK IVFTQTKRDAD +S AL EALHGDISQ QRERTL GFR G
Sbjct: 1 MTFLVQEHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHGDISQSQRERTLAGFRDGH 60
Query: 115 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 174
F +LVATDVAARGLD+PNVDLIIHYELPN+ ETFVHR+GRTGRAGK+G+AIL+++ Q R
Sbjct: 61 FKILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSR 120
Query: 175 TVRSLERDVGCKFEFVSPPVVE 196
V+ +ER+VG +F + VE
Sbjct: 121 AVKIIEREVGSRFTELPSIAVE 142
>gi|218295270|ref|ZP_03496106.1| DEAD/DEAH box helicase domain protein [Thermus aquaticus Y51MC23]
gi|218244473|gb|EED10998.1| DEAD/DEAH box helicase domain protein [Thermus aquaticus Y51MC23]
Length = 513
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 128/326 (39%), Positives = 196/326 (60%), Gaps = 26/326 (7%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR-TILSDLI 59
+LFSAT+P+W ++L+ +Y+ +P+ I++V EG+ + A + R +LSDL+
Sbjct: 179 LLFSATLPTWARRLAERYMKSPVVINVVKE------EGVTYQEEAILAPTDRLALLSDLL 232
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
V A + IVFT+TK + +EV+ L + A+ A+HGD+SQ RER + FR+G+ VL
Sbjct: 233 YVKAP-KRAIVFTKTKAETEEVATGLLRLGHAARAIHGDLSQADRERVMRAFREGEVRVL 291
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLDIP VDL++HY LP+ PET+ HRSGRTGRAG+ G ++++ ++R +
Sbjct: 292 VATDVAARGLDIPEVDLVVHYRLPDKPETYQHRSGRTGRAGRGGEVVILYGPREKRELAE 351
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALA 238
LER VG F+ V+PP E+VLE+ + ++A L V + + + A RL E + +A
Sbjct: 352 LERAVGRPFKRVNPPTPEEVLEAKWQHLLARLARVPEKDYKLYLDFAGRLFAEGRVEVVA 411
Query: 239 AALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE 298
A +A + G + P RSL+ E+GW+TL+ T AR + L + E
Sbjct: 412 ALMALILGGA--PKERSLLTGEEGWITLKAT----------GARLTLPRLVALLKERGLE 459
Query: 299 IGKIHIIADDRVQGAVFDL-PEEIAK 323
+GKI + +G DL P+++AK
Sbjct: 460 VGKIA----EAEEGFYLDLRPQDLAK 481
>gi|308802996|ref|XP_003078811.1| putative RNA helicase (ISS) [Ostreococcus tauri]
gi|116057264|emb|CAL51691.1| putative RNA helicase (ISS) [Ostreococcus tauri]
Length = 693
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 130/363 (35%), Positives = 199/363 (54%), Gaps = 24/363 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+PSWVK +S+++L N +DLVG++ +K + ++ + + + ++ D+I
Sbjct: 268 LLFSATLPSWVKDISKRFLKPNYSTVDLVGDEKQKASGAVQHMLLPCQWSDRVDLVCDVI 327
Query: 60 TVYAKGG-KTIVFTQTKRDADEVSLALTSII--ASEALHGDISQHQRERTLNGFRQGKFT 116
A GG + IVF TKRD E+ L I ++ALHGD+SQ QRE L+ FR+ KF
Sbjct: 328 RSKAPGGGRVIVFCDTKRDCGELCDNLQKEIPKGAKALHGDVSQSQREVVLSLFREDKFQ 387
Query: 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 176
VLVATDVAARGLDI V+L+I E P D ET++HRSGRTGRAG G ++ + T V
Sbjct: 388 VLVATDVAARGLDITGVELVIQCEPPKDAETYIHRSGRTGRAGATGISVTLCTPRNEWAV 447
Query: 177 RSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIE------ 230
++ER G KF + PP ++ +++ + + VH + + F A+ L+E
Sbjct: 448 PNIERKGGFKFIRIGPPQPAEMAKAAGKIAGEQIRKVHKGAAKLFMDVARDLLEGEDSDS 507
Query: 231 EKGTD---ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGF 287
E+G D LA A+A+L+G RSL+ G TL T + R + V F
Sbjct: 508 EEGRDPVEVLAMAIAKLAGHGE-LRQRSLLTSHSGQTTLLFTANGVDIR---TPTYVWNF 563
Query: 288 LSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGN-----TISKITKL 342
L + ++ ++ + D++ AVFD+P E+A + + P + TI + +L
Sbjct: 564 LRQRMDESELQLRRLTLSMDNK--AAVFDVPSELADKFVALSEPATSGKTAVTIIECAEL 621
Query: 343 PAL 345
P L
Sbjct: 622 PEL 624
>gi|146197863|dbj|BAF57642.1| nucleolar RNA helicase II/Gu protein [Dugesia japonica]
Length = 627
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 129/407 (31%), Positives = 216/407 (53%), Gaps = 36/407 (8%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSATMP+W+ + +KYL + + + L+ K A ++ AI + + D+I
Sbjct: 233 LLFSATMPNWIHNIVKKYLKPDAIKVCLIDENGSKAASTVEHLAIQCPWRERAGTIPDII 292
Query: 60 TVYAKG--GKTIVFTQTKRDADEVSLALTSIIASEA--LHGDISQHQRERTLNGFRQGKF 115
V+ G + I+F + K+DADE LA S + S+ LHGD+ Q +RE L FR+GK+
Sbjct: 293 RVHGGGNQARCIIFCERKKDADE--LASHSAMKSDCHVLHGDVPQEKRELVLKKFREGKY 350
Query: 116 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT 175
+VLV T+VAARGLD+P++DL+I P D E ++HRSGRTGRAG++G I + ++
Sbjct: 351 SVLVTTNVAARGLDVPDIDLVIQCHPPKDVEDYIHRSGRTGRAGRKGVCICFYEPKEKYD 410
Query: 176 VRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESV-EFFTPTAQRLIEEKGT 234
++ +E+ G F+ + PP ++E++ + + PE+V E F +A +LIE+ G
Sbjct: 411 LQKVEKLAGFTFKRIFPPSAASIIEANLNDTIEAFKSI-PETVCESFKESAIKLIEQFGA 469
Query: 235 D-ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYP 293
+ A+A ALA++SG +RSL++ +G+ T LT + + ++ ++S
Sbjct: 470 EKAMALALAKISGKVEELKNRSLLSSMEGFTTYMLTTNDEIKFKGYAYSALKKYIS---T 526
Query: 294 TAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPG-NTISKITKLPALQDDGPSS 352
+++ + + + VFDL E + + + N ++K+++LP ++
Sbjct: 527 EIVEQVKSLQFVKGRK--SLVFDLASEHDESISTNWVDSNFNKLTKLSELPEIEKSE--- 581
Query: 353 DNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWG 399
R GG F GG G R GG DR+ F RS+G
Sbjct: 582 ------------ERNGG--FRNGGQ--GRRPGGFNDRK-FGMKRSFG 611
>gi|297624335|ref|YP_003705769.1| DEAD/DEAH box helicase [Truepera radiovictrix DSM 17093]
gi|297165515|gb|ADI15226.1| DEAD/DEAH box helicase domain protein [Truepera radiovictrix DSM
17093]
Length = 526
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 114/270 (42%), Positives = 164/270 (60%), Gaps = 8/270 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+P W + L+ ++L +PL ++ ++ E AI S+ +LSD++
Sbjct: 178 LLFSATLPRWAESLAARHLRDPLRANVTSDESVSYDE----VAIEAPLASRLGVLSDVLH 233
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V+ G +IVFT+TK + DE++ ALTS+ +EA+HGD++Q QRER L FR + TVLV
Sbjct: 234 VHGTGA-SIVFTRTKAEVDELAKALTSLGHLAEAVHGDLNQVQRERVLERFRASQVTVLV 292
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDIP VDL++HY P PE + HRSGRTGRAG+ GT +L+++ +RR + L
Sbjct: 293 ATDVAARGLDIPEVDLVVHYRFPEQPERYQHRSGRTGRAGRAGTVVLLYSPRERRELALL 352
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
ER + + E P +DV + + L + + AQ I+ K DALA
Sbjct: 353 ERAIARRIERAGAPRPQDVQRAKLAGLQRNLAAQRDDDRSAWRAVAQAWIDAKDVDALAG 412
Query: 240 ALAQLSGFSRPPSSRSLINHEQGWVTLQLT 269
LA G + P+ RSL+ E+GW TL+LT
Sbjct: 413 LLALTLGGA--PAPRSLLTGEEGWTTLKLT 440
>gi|6807980|emb|CAB70733.1| hypothetical protein [Homo sapiens]
Length = 399
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 128/343 (37%), Positives = 197/343 (57%), Gaps = 11/343 (3%)
Query: 17 KYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQT 74
KY+ + +DLVG +K A ++ AI + + ++ D++ VY+ G+ I+F +T
Sbjct: 1 KYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCET 60
Query: 75 KRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 134
K++ E+++ ++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VD
Sbjct: 61 KKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVD 120
Query: 135 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV 194
L+I P D E+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P
Sbjct: 121 LVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPS 180
Query: 195 VEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSS 253
D+++S + + +L V +V+FF P+AQRLIEEKG DALAAALA +SG S
Sbjct: 181 TMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEP 239
Query: 254 RSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGA 313
RSLI ++G+VT+ L + + + LS A +I ++ ++ + G
Sbjct: 240 RSLITSDKGFVTMTLESLEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGV 294
Query: 314 VFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 295 CFDVPTTESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 337
>gi|242045340|ref|XP_002460541.1| hypothetical protein SORBIDRAFT_02g030210 [Sorghum bicolor]
gi|241923918|gb|EER97062.1| hypothetical protein SORBIDRAFT_02g030210 [Sorghum bicolor]
Length = 711
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 133/355 (37%), Positives = 192/355 (54%), Gaps = 20/355 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WV KLS ++L + +DLVGN+ K + +K A+ ++ ++ D+I
Sbjct: 311 LLFSATLPDWVNKLSMRFLKVDRKTVDLVGNEKLKASASVKHLALPCNKAARAQVIPDII 370
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y+ GG+TI+FT+TK A E+S I S ALHGD+ Q QRE L GFR GKF VLV
Sbjct: 371 RCYSHGGRTIIFTETKDSASELS---GLIPGSRALHGDVVQAQREVILAGFRGGKFQVLV 427
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
AT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A++++ + +V L
Sbjct: 428 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYEPRYKYSVNRL 487
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
ER+ G KFE +S P DV +S+ + ++ V + F A++L+ A
Sbjct: 488 ERESGVKFEHISAPQPTDVAQSAGSEAADAISSVSDSVIPVFRQQAEQLLSSSSLSAADL 547
Query: 240 ALAQLS---GFSRPPSSRSLINHEQGWVTLQL-TRDSAFSRGFMSARSVMGFLSDVYP-- 293
L+ G++ RSL++ + + TL L T +S GF L P
Sbjct: 548 LAKALAKAVGYTD-IKKRSLLSSMEDYTTLHLQTGRPMWSPGF-----AFTILKRFMPEE 601
Query: 294 TAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
AD G + AD G VFD+P ++ + TI ++ +LP LQ+
Sbjct: 602 KLADVKGAT-LTADG--TGVVFDVPAADVEDYIQASENAAQVTIDEVKQLPPLQE 653
>gi|145474053|ref|XP_001423049.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124390109|emb|CAK55651.1| unnamed protein product [Paramecium tetraurelia]
Length = 651
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 126/369 (34%), Positives = 199/369 (53%), Gaps = 35/369 (9%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WVK+LS KY++ N +I+L+ + + + +K YA+ + D++
Sbjct: 208 LLFSATIPDWVKELSHKYMEANTKHINLIKRHETQTSTTVKHYALQCARNQLSGAIGDVV 267
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
+VY + +TI+F +TKR+ +E+ L ++ LHGDI Q QR T GF+ GKF L
Sbjct: 268 SVYGGRHARTIIFCETKRECNEIILHSKLPAETQPLHGDIPQQQRTVTFEGFKNGKFKCL 327
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLD P VDLII P D E+++HRSGRTGRAGK+G + + +
Sbjct: 328 VATNVAARGLDFPQVDLIIQCNPPKDIESYIHRSGRTGRAGKDGKDMGL--------IER 379
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAE--QVVATLNGVHPESVEFFTPTAQRLIEE-KGTD 235
+ER KF +S P +D++++S+ Q + L V+ F P AQ +I +
Sbjct: 380 VERVAKIKFIKISAPQHQDIIKASSRDLQTIKRL-------VDMFQPVAQEIISRCDPVE 432
Query: 236 ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVY-PT 294
ALA ALA +SG+ +RS++ +G++T Q+ R S F + + FL + +
Sbjct: 433 ALARALACVSGYKDKLQNRSMLGSFEGYIT-QVLRSST---PFQACGYIWKFLKNNFSEQ 488
Query: 295 AADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQ-------IPPGNTISKITKLP-ALQ 346
+ I + I ++ G FD+ E++ +E N+ G I + T LP ++
Sbjct: 489 ICNSIKGMKKIRNE--NGVAFDISEDVKEEFENQYQEISQNGYCRGIEIEQATSLPDIIE 546
Query: 347 DDGPSSDNY 355
+ S NY
Sbjct: 547 EQFQSHQNY 555
>gi|452819914|gb|EME26964.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 671
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 128/360 (35%), Positives = 195/360 (54%), Gaps = 36/360 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVG-NQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P+WVK+ S K + NP +DLVG ++D K+ + +K YAI +K ++ D++
Sbjct: 264 LLFSATLPTWVKQQSAKNMRNPAFLDLVGEDKDAKIPKDVKHYAIEVPPFAKEAVIGDIL 323
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+V+ G K I+FT TKR+AD + + S +HGDI Q RE +NGFR+GKF L+
Sbjct: 324 SVFG-GEKCIIFTPTKREADMLGSSEYIRDESTVIHGDIPQDGRELAINGFRKGKFRNLI 382
Query: 120 ATDVAARGLDIPNVDLIIHYELPN-DPET---FVHRSGRTGRAGKEGTAILMFTSSQRRT 175
ATDVAARG+DIPNVD ++ P PE+ +VHRSGRTGRAG +G ++L+++ +++
Sbjct: 383 ATDVAARGIDIPNVDFVLMTYTPTPTPESIDMYVHRSGRTGRAGNKGKSMLIYSQAEKDK 442
Query: 176 VRSLERDVGCKFEFVSPPVVEDVLESSAE---------------QVVATL----NGVHPE 216
+ LER +G +FE + PP E +L S E QV+ L +H +
Sbjct: 443 LLRLERALGIRFERLHPPSSEQLLMVSLERSWKKVLGTPDSLVSQVLPILEDKIKNIHHQ 502
Query: 217 SVEFFTP-------TAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL- 268
T + +E+K L AALA+L GF RSL+ + G+ T +
Sbjct: 503 QYNSVTNGSVLDAIMNETKLEKKLQILLGAALARLGGFHSTVQHRSLLTSKHGFATFHIQ 562
Query: 269 -TRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKI-HIIADDRVQGAVFDLPEEIAKELL 326
R A +GF + LS+ P + I ++ A+FD+ E++A L+
Sbjct: 563 DNRPIAKRKGF-GVHFLRRILSESLPDLVKDTEAISKVVVYPSGYEALFDVSEKVASSLV 621
>gi|198419625|ref|XP_002130533.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
[Ciona intestinalis]
Length = 672
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 125/360 (34%), Positives = 200/360 (55%), Gaps = 24/360 (6%)
Query: 1 MLFSATMPSWVKKLSRKYL--DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
+LFSAT P WV+ SRKY+ +++D +G + A ++ AI + + + ++
Sbjct: 275 LLFSATCPPWVRNTSRKYMRPSETVHVDTIGKSLVRTATTVEHLAIRCQYSDRAECIGNV 334
Query: 59 ITVYA-KGGKTIVFTQTKRDADE--VSLALTSIIASEALHGDISQHQRERTLNGFRQGKF 115
+ +Y+ + G+ ++FT TK+DA+E V AL A + LHGDI Q QRE TL +R G
Sbjct: 335 VQMYSGQHGRAMIFTDTKKDANELVVCEALQQQKA-QVLHGDIEQRQREITLKAYRDGTV 393
Query: 116 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT 175
LVAT+VAARGLDIP +DL+I P+D ++++HRSGRTGRAG+ G + + +
Sbjct: 394 RCLVATNVAARGLDIPEIDLVIQTSPPSDIDSYIHRSGRTGRAGRTGVCVCFYKPREDMM 453
Query: 176 VRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEK--- 232
++ +ER G KF+ V PP +D++++S +A+L+ V + F A+++
Sbjct: 454 IKKVERVAGIKFKMVGPPQPKDIVKASVNDAIASLDLVDKKITAEFMKHAEQVASNHAGG 513
Query: 233 GTDALAAALAQLSGFSRPPSSRSLINHEQGWVT--LQLTRDSAFSRGFM--SARSVMGFL 288
+ALA+ALA ++G S SRSL+N + + T LQ + F+ GF+ + ++G
Sbjct: 514 AMEALASALAYMAGASD-LKSRSLLNAQADFTTWHLQTQYEIRFA-GFVFSTMEQILG-- 569
Query: 289 SDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNK-QIPPGNTISKITKLPALQD 347
D+I + + AD GAVFDLP E +E+ + P T+ LP L +
Sbjct: 570 ----KHIRDKIVGMRLTADKL--GAVFDLPNECTEEIDQSWEDSPTLTLKPCDDLPELTE 623
>gi|255539651|ref|XP_002510890.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223550005|gb|EEF51492.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 690
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 129/353 (36%), Positives = 194/353 (54%), Gaps = 17/353 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WVK++S ++L + IDLVGN+ K + ++ + +A++ ++ D+I
Sbjct: 294 LLFSATLPEWVKQISSRFLKASKKTIDLVGNEKMKASTNVRHIILPCSASAIPQVIPDII 353
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y+ GG+TI+FT+ + A+E++ L + ALHG+I Q QRE TL+GFR GKF LV
Sbjct: 354 RCYSSGGRTIIFTEKRESANELAGLLH---GARALHGEIQQSQREVTLSGFRSGKFLTLV 410
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
AT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A++++ +R + +
Sbjct: 411 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DPRRSNISKI 469
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDAL-- 237
ER+ G KFE ++ P D+ ++ + V V F A+ L+ G A+
Sbjct: 470 ERESGVKFEHITAPQPADIAQAVGAVAAEKITQVSDSIVPAFKSAAEDLLNSSGLSAVEL 529
Query: 238 -AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPT-A 295
A ALA +G++ SRSL++ + VTL L R + G L P
Sbjct: 530 LAKALANAAGYTE-IKSRSLLSSMENHVTLLLEA----GRPIYTPSFAFGVLRRFLPEDK 584
Query: 296 ADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITK-LPALQD 347
+ + + + AD + GAVFD+ L Q N +I K LP LQ+
Sbjct: 585 VESVKGMTLTADGK--GAVFDVAAADIDTFLAGQDNAANVSLEILKALPPLQE 635
>gi|360044772|emb|CCD82320.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 710
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 135/422 (31%), Positives = 203/422 (48%), Gaps = 52/422 (12%)
Query: 1 MLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSATMPSWV ++SR YL D+ L++ L+ Q+ K + + A+ S+ LSD+I
Sbjct: 281 LLFSATMPSWVSEISRCYLSDDALHLSLIDEQETKTSTNVTHLALLCPYESRAATLSDVI 340
Query: 60 TVYAKG--GKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
VY KG + IVF + K+DADE+S + LHG + Q +RE L FR GK+
Sbjct: 341 KVYCKGRESRCIVFCERKKDADELSASDAMSGDCHVLHGSVPQDKRELVLQRFRDGKYRT 400
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
L+ T+VAARGLD+PNVDL+I P D E ++HRSGRTGRA + GT+I +T +R +
Sbjct: 401 LLTTNVAARGLDVPNVDLVIQCHPPRDIEDYIHRSGRTGRADRSGTSICFYTYKERSMLS 460
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRL--------- 228
+E G F +S P + D+ + E+++ T + V + F P A +
Sbjct: 461 RIENMAGITFRRISAPTINDITTAWGEEILKTFSNVPKSTWSTFVPLALSIANQLAQNSK 520
Query: 229 --------IEEKGTD----------------ALAAALAQLSGFSRPPSSRSLINHEQGWV 264
++ G D L ALA LSG SRS + + G
Sbjct: 521 TGKVKKDSCDDLGVDDDKTPGRKPKSKDILRVLCCALACLSGKEGAFESRSALTAQIGKT 580
Query: 265 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDR-VQGAVFDLPEEIAK 323
+L + F++ + F + + + +H ++ R G VFDLP E
Sbjct: 581 AYKLELN------FIARSKGLAFATLRNHLPENIVNSVHSLSFIRGKMGYVFDLPSE-HD 633
Query: 324 ELLNKQIP--PGNTISKITKLPALQDD----GPSSDNYGRFSSRDRFSRGGGSRFSRGGA 377
E + P +S ++K+P L+++ S NYG + S RF+ G F R
Sbjct: 634 EFVKSTWPNDAQAKLSLLSKIPELEEEEFFNQGRSGNYGSWQS--RFNGGSRQSFKRSYN 691
Query: 378 RG 379
G
Sbjct: 692 SG 693
>gi|145345534|ref|XP_001417262.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577489|gb|ABO95555.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 654
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 128/363 (35%), Positives = 194/363 (53%), Gaps = 24/363 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WVK +++++L + +DLVG+Q +K + ++ + + + ++ D+I
Sbjct: 270 LLFSATLPPWVKDIAKRFLKPDYATVDLVGDQKQKASGAVQHMLLPCQWSDRVDLVCDVI 329
Query: 60 TVYAKGG-KTIVFTQTKRDADEVSLALTSII--ASEALHGDISQHQRERTLNGFRQGKFT 116
A GG + IVF TKRD E+ L I ++ALHGD+SQ QRE L GFR+ KF
Sbjct: 330 RSKAPGGGRVIVFCDTKRDCGELCDNLQKEIPKGAKALHGDVSQGQREVVLAGFREDKFQ 389
Query: 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 176
VLVATDVAARGLDI V+L+I E P D ET++HRSGRTGRAG G ++ + T V
Sbjct: 390 VLVATDVAARGLDITGVELVIQCEPPKDAETYIHRSGRTGRAGATGISVTLCTPRSEWAV 449
Query: 177 RSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIE------ 230
++ER G KF + PP ++ +++ + + VH + + F A+ L+E
Sbjct: 450 PNIERKGGFKFVRIGPPQPAEMAKAAGKIAGEQIRKVHKGAAKLFMDVARDLLEGEDSDS 509
Query: 231 EKGTD---ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGF 287
E+G D LA A+A+L+G RSL+ G TL T R + V F
Sbjct: 510 EEGRDPVEVLAMAIAKLAGHGE-LRQRSLLTSHSGQTTLLFTAGETQIR---TPTYVWNF 565
Query: 288 LSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGN-----TISKITKL 342
L ++ ++ + D+ AVFD+P E+A + P + +I+ +L
Sbjct: 566 LRQRMDENDLQLRRLTLSVDN--MAAVFDVPSELADKFCALSEPASSGKSAVSITACEEL 623
Query: 343 PAL 345
P L
Sbjct: 624 PEL 626
>gi|410697698|gb|AFV76766.1| DNA/RNA helicase, superfamily II [Thermus oshimai JL-2]
Length = 508
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 118/271 (43%), Positives = 167/271 (61%), Gaps = 11/271 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLI 59
+LFSAT+PSW +KLS +Y+ P+ I++V EG+ + A + R +LSDL+
Sbjct: 179 LLFSATLPSWARKLSERYMRAPVLINVVRE------EGVTYQEEAILAPTDRLGLLSDLL 232
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
V A + IVFT TKR+ +EV+ L + A+HGD+SQ RER L FR+G+ VL
Sbjct: 233 FVKAP-KRAIVFTSTKRETEEVAAGLLQAGHPARAIHGDLSQSDRERVLKAFREGEVRVL 291
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLDIP VDL++HY LP PE + HRSGRTGRAG+ G + + ++R + +
Sbjct: 292 VATDVAARGLDIPEVDLVVHYRLPQSPEAYQHRSGRTGRAGRGGEVVAFYGPREKRELMA 351
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALA 238
LE+ VG F V+PP E+VLE+ + ++A L GV + + AQRL E + +A
Sbjct: 352 LEKAVGRTFRRVNPPTPEEVLEAKWQHLLARLAGVPERDYKLYLDFAQRLFAEGRVEVVA 411
Query: 239 AALAQLSGFSRPPSSRSLINHEQGWVTLQLT 269
A +A L G + P +SL+ E+GW T + T
Sbjct: 412 ALMALLLGGA--PKEKSLLTGEEGWRTFKAT 440
>gi|82539303|ref|XP_724049.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23478563|gb|EAA15614.1| Unknown protein [Plasmodium yoelii yoelii]
Length = 635
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/242 (42%), Positives = 147/242 (60%), Gaps = 20/242 (8%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAIST--TATSKRTILSDL 58
+L+SAT PSW+K +S KYL NP+ ID++ N K ++ I+ AI T K +L D+
Sbjct: 317 LLYSATTPSWIKDISSKYLKNPIYIDVI-NTINKTSKTIQHIAIKTPYDIKEKAMLLEDI 375
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSIIASE---------ALHGDISQHQRERTLNG 109
I V + GG+ I+FT+TK +AD I+ASE LHG+I+Q RE T+
Sbjct: 376 ILVKSNGGQVIIFTRTKLEAD--------ILASEGSFNYLNFSVLHGNIAQSTREHTMQR 427
Query: 110 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 169
FR G F VL+ATD+AARGLDI NVDLII P P ++HRSGRTGRA K+G +I++F+
Sbjct: 428 FRNGMFQVLIATDIAARGLDISNVDLIIQCYPPTYPAIYIHRSGRTGRANKKGISIVLFS 487
Query: 170 SSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLI 229
+ + V +E++ G KF S P E V S ++ ++ + V+ E + FF +A LI
Sbjct: 488 NEDKNDVIKIEKNCGIKFLTESLPSNEQVFHSVSKIILKKIENVNSEVLPFFYKSANELI 547
Query: 230 EE 231
E+
Sbjct: 548 EK 549
>gi|256083212|ref|XP_002577843.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 794
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 135/422 (31%), Positives = 203/422 (48%), Gaps = 52/422 (12%)
Query: 1 MLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSATMPSWV ++SR YL D+ L++ L+ Q+ K + + A+ S+ LSD+I
Sbjct: 365 LLFSATMPSWVSEISRCYLSDDALHLSLIDEQETKTSTNVTHLALLCPYESRAATLSDVI 424
Query: 60 TVYAKG--GKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
VY KG + IVF + K+DADE+S + LHG + Q +RE L FR GK+
Sbjct: 425 KVYCKGRESRCIVFCERKKDADELSASDAMSGDCHVLHGSVPQDKRELVLQRFRDGKYRT 484
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
L+ T+VAARGLD+PNVDL+I P D E ++HRSGRTGRA + GT+I +T +R +
Sbjct: 485 LLTTNVAARGLDVPNVDLVIQCHPPRDIEDYIHRSGRTGRADRSGTSICFYTYKERSMLS 544
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRL--------- 228
+E G F +S P + D+ + E+++ T + V + F P A +
Sbjct: 545 RIENMAGITFRRISAPTINDITTAWGEEILKTFSNVPKSTWSTFVPLALSIANQLAQNSK 604
Query: 229 --------IEEKGTD----------------ALAAALAQLSGFSRPPSSRSLINHEQGWV 264
++ G D L ALA LSG SRS + + G
Sbjct: 605 TGKVKKDSCDDLGVDDDKTPGRKPKSKDILRVLCCALACLSGKEGAFESRSALTAQIGKT 664
Query: 265 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDR-VQGAVFDLPEEIAK 323
+L + F++ + F + + + +H ++ R G VFDLP E
Sbjct: 665 AYKLELN------FIARSKGLAFATLRNHLPENIVNSVHSLSFIRGKMGYVFDLPSE-HD 717
Query: 324 ELLNKQIP--PGNTISKITKLPALQDD----GPSSDNYGRFSSRDRFSRGGGSRFSRGGA 377
E + P +S ++K+P L+++ S NYG + S RF+ G F R
Sbjct: 718 EFVKSTWPNDAQAKLSLLSKIPELEEEEFFNQGRSGNYGSWQS--RFNGGSRQSFKRSYN 775
Query: 378 RG 379
G
Sbjct: 776 SG 777
>gi|46200197|ref|YP_005864.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB27]
gi|46197825|gb|AAS82237.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB27]
Length = 517
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 131/331 (39%), Positives = 195/331 (58%), Gaps = 21/331 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+PSW K+L+ +Y+ NP+ I+++ ++ E A+ + +LSDL+
Sbjct: 186 LLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEEE----AVPAPVRGRLEVLSDLLY 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V A + +VFT+TK + +E++ L + ++ALHGD+SQ +RER L FRQG+ VLV
Sbjct: 242 V-ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDIP VDL++HY LP+ E + HRSGRTGRAG+ G +L++ +RR V +L
Sbjct: 301 ATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEAL 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
ER VG +F+ V+PP E+VLE+ ++A L V + + A RL E + +AA
Sbjct: 361 ERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAA 420
Query: 240 ALAQLSGFSRPPSSRSLINHEQGWVT-------LQLTRDSAFSRGF-----MSARSVMGF 287
LA L G + + RSL+ E+GW T L L R A +G A + GF
Sbjct: 421 LLALLLGGAP--AERSLLTGEEGWRTYKATGPRLSLPRLVALLKGQGLEVGKVAEAEGGF 478
Query: 288 LSDVYPTAADEIGKIHIIADDRVQGAVFDLP 318
D+ P A E+ + + RV+G + ++P
Sbjct: 479 YVDLRPEARPEVAGLRLEPARRVEG-LLEIP 508
>gi|323450835|gb|EGB06714.1| hypothetical protein AURANDRAFT_28650, partial [Aureococcus
anophagefferens]
Length = 482
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/190 (48%), Positives = 130/190 (68%), Gaps = 3/190 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI--KLYAISTTATSKRTILSDL 58
+LFSAT PSWVKKL+ KYL++P +D+VG+ ++ A + K + ++ ++L D+
Sbjct: 293 LLFSATTPSWVKKLTSKYLEDPELVDVVGDARQQAATTVTHKAVLVPRGPDARASLLEDI 352
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTV 117
I GG+ IVFT TK++ DE++ +A++ LHGDI Q QRE TL FR+G FTV
Sbjct: 353 IAAAQGGGRVIVFTSTKKECDELAGGPAFQRLAAQVLHGDIGQAQRETTLAQFRRGAFTV 412
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARG+D+ VDL++ Y P D E +VHRSGRTGRAG++GTA++++ + R VR
Sbjct: 413 LVATDVAARGIDVKGVDLVVQYRTPRDAEGYVHRSGRTGRAGRDGTAVVLYDEREERDVR 472
Query: 178 SLERDVGCKF 187
SLER G F
Sbjct: 473 SLERLTGVTF 482
>gi|328949667|ref|YP_004367002.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
DSM 14884]
gi|328449991|gb|AEB10892.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
DSM 14884]
Length = 517
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 118/305 (38%), Positives = 178/305 (58%), Gaps = 17/305 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMPSW ++L+ ++L +P +LV ++ A + AI ++ +LSD++
Sbjct: 179 LVFSATMPSWARRLAERHLKDPFVANLVKDE----AVTYRELAIEAPTATRIAVLSDVLH 234
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y G+ IVFT+TK + D ++ AL A+EA+HGD+SQ RER + FR+G VLV
Sbjct: 235 AYG-AGRAIVFTRTKAETDALATALAGRRHAAEAVHGDLSQAARERVVARFRKGLVRVLV 293
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+P V+L++HY LP E + HRSGRTGRAG+ GT +L++ +RRTV L
Sbjct: 294 ATDVAARGLDVPEVELVVHYRLPERVEVYQHRSGRTGRAGRTGTVVLLYGPRERRTVADL 353
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
ER + +FE ++PP +V + ++ + A+ + T++LA
Sbjct: 354 ERALRRRFERLAPPTPGEVQRAQLAALLQRAAAQPEADRAVWREVARDWVARGDTESLAG 413
Query: 240 ALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEI 299
LA L G + P RSL+ E+GWVTL+L R +AR V+G L A E+
Sbjct: 414 LLAMLLGGA--PPQRSLLTGEEGWVTLELK-----GRNLTTAR-VVGALRH---AGAGEV 462
Query: 300 GKIHI 304
G++ +
Sbjct: 463 GRVSV 467
>gi|397573970|gb|EJK48957.1| hypothetical protein THAOC_32204 [Thalassiosira oceanica]
Length = 900
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 136/401 (33%), Positives = 204/401 (50%), Gaps = 64/401 (15%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQD-EKLAEGIKLYAISTT--ATSKRTILSD 57
+LFSAT P WV+++ +Y + L+ID+ G Q + A+ ++ AI +K+ IL D
Sbjct: 406 LLFSATTPPWVREIGSRYQKDALSIDITGEQTGARTAKTVRHTAIQVPFGIDAKKAILED 465
Query: 58 LITVYAKG-------------------------------------------GKTIVFTQT 74
+I V GKTIVFT+T
Sbjct: 466 IIAVEISKDVKLDASQDSDSEDEDDEHHNVIAAAAKAAKDKSNSALQQKIFGKTIVFTET 525
Query: 75 KRDADE-VSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 133
K + D+ VS ++ + ++ +HGDI Q QR+ TL FR G F VLVATDVAARG+DI +V
Sbjct: 526 KAECDQLVSGSVFKTLTAQTIHGDIGQKQRDATLAAFRAGSFNVLVATDVAARGIDIKDV 585
Query: 134 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV--GCKFEFVS 191
DL+I + P D +T+VHRSGRTGRAG +G ++++F +Q R + +ER + G KFE +
Sbjct: 586 DLVIQFHPPRDTDTYVHRSGRTGRAGAKGISVVLFQQNQARDIVRMERSLGHGFKFELLG 645
Query: 192 PPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIE-EKGTDALAAALAQLSGFSRP 250
PP E L ++A+ V E+ E F A L+ + D +A LA +S +
Sbjct: 646 PPSTEAALIAAAKTSAIACKSVADETAEHFREAAGILLATDDAEDVVARCLAAISRRAVQ 705
Query: 251 PSSRSLINHEQGWVTLQLTRDSAFSRGF-MSARSVMGFLSDVYPTAADEIGKIHI----- 304
SRSL+ E G+ T+++T SRG +S VM +S + + E G +
Sbjct: 706 VESRSLLTGEAGFSTVEMTN----SRGRPVSPGDVMFTVSKLSRMSQKEGGDLSFDGDVG 761
Query: 305 -IADDRVQG-AVFDLPEEIAKELL--NKQIPPGNTISKITK 341
I +R G AVFD+ E AK+L+ + +I G + + K
Sbjct: 762 KIQTNRETGNAVFDMGVEDAKKLVEFSAEIEAGGAVFSLMK 802
>gi|124506009|ref|XP_001351602.1| ATP-dependent helicase, putative [Plasmodium falciparum 3D7]
gi|23504529|emb|CAD51409.1| ATP-dependent helicase, putative [Plasmodium falciparum 3D7]
gi|156072126|gb|ABU45414.1| DEAD-box helicase 5 [Plasmodium falciparum]
Length = 755
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 119/347 (34%), Positives = 190/347 (54%), Gaps = 35/347 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAIST--TATSKRTILSDL 58
+L+SAT PSW+K +S KYL NP ID+V + + K A+ IK AI T K +L D+
Sbjct: 367 LLYSATTPSWIKDISSKYLKNPFCIDVVDSSN-KTAKNIKHIAIKTPYDIKEKALLLEDI 425
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSIIASE---------ALHGDISQHQRERTLNG 109
I V + GG+ I+FT+TK +AD I+ SE LHG+I+Q RE T+
Sbjct: 426 ILVKSNGGQVIIFTRTKLEAD--------ILCSEGSFKSLSFAVLHGNIAQSTREYTMQR 477
Query: 110 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 169
FRQG F +L+ATD+A+RGLDI NVDL+I PN ++HR+GRTGRA K+GT++++++
Sbjct: 478 FRQGMFQILIATDIASRGLDISNVDLVIQCFPPNYSAVYIHRAGRTGRANKKGTSLVLYS 537
Query: 170 SSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLI 229
+ ++ + +E++ G KF + P E V ++ + V+ E + FF TA+ LI
Sbjct: 538 NEDKQDLIKIEKNCGIKFNMETLPNNEQVFHCASAIASKKVENVNKEILPFFHDTAKELI 597
Query: 230 EEKGT------DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARS 283
+ + + ++ LA ++ RSLIN VTL +R + S
Sbjct: 598 NKSNSLKIDQIELISRCLAIIAK-KEHIKKRSLINGLSETVTLNFINK---NRKWSSEAD 653
Query: 284 VMGFL----SDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELL 326
++ ++ +++ ++I +I I DR + FD+ E +A+ L
Sbjct: 654 IVYWVNKLSNELNVNTFNKILQIKIDNKDRA-SSFFDINENLAELFL 699
>gi|320451062|ref|YP_004203158.1| DEAD/DEAH box helicase [Thermus scotoductus SA-01]
gi|320151231|gb|ADW22609.1| DEAD-box ATP-dependent RNA helicase [Thermus scotoductus SA-01]
Length = 521
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 121/304 (39%), Positives = 179/304 (58%), Gaps = 21/304 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR-TILSDLI 59
+LFSAT+PSW +KL+ +Y+ +P+ I++V EGI + A R ++LSD++
Sbjct: 179 LLFSATLPSWARKLAERYMKSPVVINVVRE------EGITYQEEAIPAPGDRLSLLSDVL 232
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
V A + IVFT+TK + +EV+ L + + A+HGD+SQ RER + FR+G+ VL
Sbjct: 233 FVKAP-KRAIVFTRTKAETEEVATGLLRLGHPARAIHGDLSQTDRERVMRAFREGEVRVL 291
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLDIP VDL++HY P+ PET+ HRSGRTGRAG+ G ++++ +RR +
Sbjct: 292 VATDVAARGLDIPEVDLVVHYRFPDKPETYQHRSGRTGRAGRGGEVVILYGPRERRELSE 351
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALA 238
LER VG + V+PP E+VLE+ ++A L V + + A RL E + +A
Sbjct: 352 LERAVGRTLKRVNPPTPEEVLEAKWHHLLARLARVPERDYKLYQDFASRLFAEGRVEVVA 411
Query: 239 AALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE 298
A +A L G + P +SL+ E+GW+T + T R + L + A E
Sbjct: 412 ALMALLLGGA--PKEKSLLTGEEGWLTFKAT----------GPRLTLPRLVALLKEAGLE 459
Query: 299 IGKI 302
+GKI
Sbjct: 460 VGKI 463
>gi|68063293|ref|XP_673656.1| ATP-dependent helicase [Plasmodium berghei strain ANKA]
gi|56491666|emb|CAH95329.1| ATP-dependent helicase, putative [Plasmodium berghei]
Length = 525
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 111/283 (39%), Positives = 160/283 (56%), Gaps = 27/283 (9%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT--ATSKRTILSDL 58
+L+SAT PSW+K +S KYL NP+ ID++ N K ++ I+ AI T K +L D+
Sbjct: 211 LLYSATTPSWIKDISSKYLKNPIYIDVI-NTINKTSKTIQHIAIKTPYDIKEKAMLLEDI 269
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSIIASE---------ALHGDISQHQRERTLNG 109
I V + GG+ I+FT+TK +AD I+ SE LHG+I+Q RE T+
Sbjct: 270 ILVKSNGGQVIIFTRTKLEAD--------ILCSEGSFNYLTFSVLHGNIAQSTREHTMQR 321
Query: 110 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 169
FR G F VL+ATD+AARGLDI NVDL+I P P ++HRSGRTGRA K+G +I++F+
Sbjct: 322 FRSGMFQVLIATDIAARGLDISNVDLVIQCYPPTYPAIYIHRSGRTGRANKKGMSIVLFS 381
Query: 170 SSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLI 229
+ + V +E++ G KF S P E V S ++ + + V+ E + FF +A LI
Sbjct: 382 NEDKNDVIKIEKNCGIKFTTESLPNNEQVFHSVSKITLKKIENVNTEVLPFFHKSANELI 441
Query: 230 EEKG------TDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 266
E+ D ++ LA +S RSLI+ +TL
Sbjct: 442 EKSNLLNINQIDLISRCLAIISK-KEYIKKRSLISGLSDTITL 483
>gi|55980078|ref|YP_143375.1| ATP-dependent RNA helicase [Thermus thermophilus HB8]
gi|55771491|dbj|BAD69932.1| ATP-dependent RNA helicase [Thermus thermophilus HB8]
Length = 517
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 130/331 (39%), Positives = 193/331 (58%), Gaps = 21/331 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+PSW K+L+ +Y+ NP+ I+++ ++ E A+ + +LSDL+
Sbjct: 186 LLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEE----EAVPAPVRGRLEVLSDLLY 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V A + +VFT+TK + +E++ L + ++ALHGD+SQ +RER L FRQG+ VLV
Sbjct: 242 V-ASPDRAMVFTRTKAETEEIAQGLLRLGHLAQALHGDLSQGERERVLGAFRQGEVRVLV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDIP VDL++HY LP+ E + HRSGRTGRAG+ G +L++ +RR V +L
Sbjct: 301 ATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEAL 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
ER VG +F+ V+PP E+VLE+ ++A L V + A RL E + +AA
Sbjct: 361 ERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLHLDFAGRLFSEGRVEVVAA 420
Query: 240 ALAQLSGFSRPPSSRSLINHEQGWVT-------LQLTRDSAFSRGF-----MSARSVMGF 287
LA L G + P +SL+ E+GW T L L R A +G A + G
Sbjct: 421 LLALLLGGA--PKEKSLLTGEEGWRTYKATGPRLSLPRLVALLKGQGLEVGKIAEAEGGL 478
Query: 288 LSDVYPTAADEIGKIHIIADDRVQGAVFDLP 318
D+ P A E+ + + RV+G + ++P
Sbjct: 479 YVDLRPEARPEVAGLRLEPARRVEG-LLEIP 508
>gi|2231116|emb|CAA65745.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB8]
Length = 510
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 130/331 (39%), Positives = 193/331 (58%), Gaps = 21/331 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+PSW K+L+ +Y+ NP+ I+++ ++ E A+ + +LSDL+
Sbjct: 179 LLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEE----EAVPAPVRGRLEVLSDLLY 234
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V A + +VFT+TK + +E++ L + ++ALHGD+SQ +RER L FRQG+ VLV
Sbjct: 235 V-ASPDRAMVFTRTKAETEEIAQGLLRLGHLAQALHGDLSQGERERVLGAFRQGEVRVLV 293
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDIP VDL++HY LP+ E + HRSGRTGRAG+ G +L++ +RR V +L
Sbjct: 294 ATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEAL 353
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
ER VG +F+ V+PP E+VLE+ ++A L V + A RL E + +AA
Sbjct: 354 ERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLHLDFAGRLFSEGRVEVVAA 413
Query: 240 ALAQLSGFSRPPSSRSLINHEQGWVT-------LQLTRDSAFSRGF-----MSARSVMGF 287
LA L G + P +SL+ E+GW T L L R A +G A + G
Sbjct: 414 LLALLLGGA--PKEKSLLTGEEGWRTYKATGPRLSLPRLVALLKGQGLEVGKIAEAEGGL 471
Query: 288 LSDVYPTAADEIGKIHIIADDRVQGAVFDLP 318
D+ P A E+ + + RV+G + ++P
Sbjct: 472 YVDLRPEARPEVAGLRLEPARRVEG-LLEIP 501
>gi|384440186|ref|YP_005654910.1| ATP-dependent RNA helicase [Thermus sp. CCB_US3_UF1]
gi|359291319|gb|AEV16836.1| ATP-dependent RNA helicase [Thermus sp. CCB_US3_UF1]
Length = 512
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/272 (41%), Positives = 173/272 (63%), Gaps = 13/272 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR-TILSDLI 59
+LFSAT+PSW ++L+ +Y+ P+ I++V EG+ + A S+R ++LSDL+
Sbjct: 179 LLFSATLPSWARRLAERYMRAPVVINVVRE------EGVTYREEALLAPSERLSLLSDLL 232
Query: 60 TVYAKGGK-TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
Y K K IVFT+TK + +EV+ L + + A+HGD+SQ RER + FR G+ +
Sbjct: 233 --YVKSPKRAIVFTRTKAETEEVATGLLRLGHPARAIHGDLSQADRERVMRAFRDGEVRI 290
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARGLDIP VDL++H+ LP+ PET+ HRSGRTGRAG+ G ++++ + ++R +
Sbjct: 291 LVATDVAARGLDIPEVDLVVHFRLPDKPETYQHRSGRTGRAGRGGEVVILYGNREKRELA 350
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDAL 237
LER VG F+ V+PP E+VLE+ ++A L V + + + A RL E + +
Sbjct: 351 ELERAVGRTFKRVNPPTPEEVLEAKWHHLLARLARVPEKDYKLYLDFAGRLFAEGRVEVV 410
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 269
AA +A L G + P +SL+ E+GW+T + T
Sbjct: 411 AALMALLLGGA--PREKSLLTGEEGWLTFKAT 440
>gi|226468796|emb|CAX76426.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Schistosoma japonicum]
gi|226468798|emb|CAX76427.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Schistosoma japonicum]
Length = 622
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 118/357 (33%), Positives = 177/357 (49%), Gaps = 44/357 (12%)
Query: 1 MLFSATMPSWVKKLSRKYLDN-PLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSATMPSWV +SR YL N L++ L+ Q+ K + + A+ S+ LSD+I
Sbjct: 194 LLFSATMPSWVSDISRNYLSNDALHLSLIDEQETKASTNVTHLALLCPYESRAATLSDVI 253
Query: 60 TVYAKG--GKTIVFTQTKRDADEVSLALTSIIASEA--LHGDISQHQRERTLNGFRQGKF 115
VY K + IVF + K+DADE LA +S++ ++ LHGD+ Q +RE L FR GK+
Sbjct: 254 KVYCKSRESRCIVFCERKKDADE--LAASSVMPTDCHVLHGDVPQDKREFVLQKFRDGKY 311
Query: 116 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT 175
L+ T+VAARGLD+P+VDL+I P D E ++HRSGRTGRA + GT+I +T +R
Sbjct: 312 RTLLTTNVAARGLDVPHVDLVIQCHPPRDVEDYIHRSGRTGRADRSGTSICFYTYKERSM 371
Query: 176 VRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEE---- 231
+ +E G F +S P + D+ + E++ T + + + F P A + ++
Sbjct: 372 LSKIENMAGITFRRISAPTIHDITAAWGEEISKTFSTIPKSTWSTFMPLAFSVADQLSQN 431
Query: 232 ------------------KGTD----------ALAAALAQLSGFSRPPSSRSLINHEQGW 263
K D AL ALA LSG +RS + + G
Sbjct: 432 SNSKKIKTNSLDDLKAGSKACDRKPKSKDVLHALCCALACLSGKEGAIENRSALTAQNGK 491
Query: 264 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEE 320
+L + ++ S+ +L + + I + I G VFDLP E
Sbjct: 492 TAYKLELNFIARSKALAFASLRNYLPE---NVVNSINSLSFIRGK--MGYVFDLPSE 543
>gi|60551600|gb|AAH91427.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Rattus norvegicus]
Length = 380
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/338 (36%), Positives = 189/338 (55%), Gaps = 25/338 (7%)
Query: 21 NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDAD 79
NP+N+ L AI + + ++ D++ VY+ G+ I+F +TK++
Sbjct: 2 NPINLHL---------------AIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVT 46
Query: 80 EVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 139
E+++ ++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I
Sbjct: 47 EMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQS 106
Query: 140 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 199
P D E+++HRSGRTGRAG+ G + + +R +R +E+ G F+ V P D++
Sbjct: 107 SPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLV 166
Query: 200 ESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLIN 258
+S + + +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI
Sbjct: 167 KSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGASS-FEPRSLIT 225
Query: 259 HEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLP 318
++G+VT+ L + + + LS A ++ ++ ++ + G FD+P
Sbjct: 226 SDKGFVTMTLESPEEIQDVSCAWKELNRKLSS---NAVSQVTRMCLLKGN--MGVCFDVP 280
Query: 319 EEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
++ L + +S KLP +++ DG +S N
Sbjct: 281 TSESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 318
>gi|386361220|ref|YP_006059465.1| DNA/RNA helicase [Thermus thermophilus JL-18]
gi|383510247|gb|AFH39679.1| DNA/RNA helicase, superfamily II [Thermus thermophilus JL-18]
Length = 510
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 127/325 (39%), Positives = 188/325 (57%), Gaps = 20/325 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+PSW K+L+ +Y+ NP+ I+++ ++ E A+ + +LSDL+
Sbjct: 179 LLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEE----EAVPAPVRGRLEVLSDLLY 234
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V A + +VFT+TK + +E++ L + ++A+HGD+SQ +RER L FRQG+ VLV
Sbjct: 235 V-ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQAIHGDLSQGERERVLGAFRQGEVRVLV 293
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDIP VDL++HY LP+ E + HRSGRTGRAG+ G +L++ +RR V +L
Sbjct: 294 ATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEAL 353
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
ER VG +F+ V+PP E+VLE+ ++A L V + A RL E + +AA
Sbjct: 354 ERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLHLDFAGRLFSEGRVEVVAA 413
Query: 240 ALAQLSGFSRPPSSRSLINHEQGWVT-------LQLTRDSAFSRGF-----MSARSVMGF 287
LA L G + + RSL+ E+GW T L L R A +G A + G
Sbjct: 414 LLALLLGGAP--AERSLLTGEEGWRTYKATGPRLSLPRLVALLKGQGLEVGKIAEAEGGL 471
Query: 288 LSDVYPTAADEIGKIHIIADDRVQG 312
D+ P A E+ + +V+G
Sbjct: 472 YVDLRPGARPEVQDFRLEPTRKVEG 496
>gi|384430474|ref|YP_005639834.1| DEAD/DEAH box helicase [Thermus thermophilus SG0.5JP17-16]
gi|333965942|gb|AEG32707.1| DEAD/DEAH box helicase domain protein [Thermus thermophilus
SG0.5JP17-16]
Length = 510
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 127/325 (39%), Positives = 188/325 (57%), Gaps = 20/325 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+PSW K+L+ +Y+ NP+ I+++ ++ E A+ + +LSDL+
Sbjct: 179 LLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEE----EAVPAPVRGRLEVLSDLLY 234
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V A + +VFT+TK + +E++ L + ++A+HGD+SQ +RER L FRQG+ VLV
Sbjct: 235 V-ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQAIHGDLSQGERERVLGAFRQGEVRVLV 293
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDIP VDL++HY LP+ E + HRSGRTGRAG+ G +L++ +RR V +L
Sbjct: 294 ATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEAL 353
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
ER VG +F+ V+PP E+VLE+ ++A L V + A RL E + +AA
Sbjct: 354 ERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLHLDFAGRLFSEGRVEVVAA 413
Query: 240 ALAQLSGFSRPPSSRSLINHEQGWVT-------LQLTRDSAFSRGF-----MSARSVMGF 287
LA L G + + RSL+ E+GW T L L R A +G A + G
Sbjct: 414 LLALLLGGAP--AERSLLTGEEGWRTYKATGPRLSLPRLVALLKGQGLEVGKIAEAEGGL 471
Query: 288 LSDVYPTAADEIGKIHIIADDRVQG 312
D+ P A E+ + +V+G
Sbjct: 472 YVDLRPGARPEVQDFRLEPTRKVEG 496
>gi|403331283|gb|EJY64580.1| DEAD/DEAH box helicase family protein [Oxytricha trifallax]
Length = 1264
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 131/200 (65%), Gaps = 2/200 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLN-IDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
LFSAT+P WV+ +++++L +DL + K A+ ++ AI+ ++ DL+
Sbjct: 617 LFSATIPPWVRDIAQEHLRQGYTMVDLAKDLKNKTAKRVRHIAINCPFYKTEQVILDLLM 676
Query: 61 VYAKGGKTIVFTQTKRDADE-VSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+Y GG++IVFT+TK DA+ +S S + +HGDI QH RE TL F++G+ VLV
Sbjct: 677 MYGTGGRSIVFTKTKSDANSLISSDRFSKNDIQVMHGDIPQHSREMTLRAFKEGRLKVLV 736
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVA+RGLDIPNV+LI+ E P DPET++HR+GRT RAGKEGT I+++ + + + +
Sbjct: 737 ATDVASRGLDIPNVELIVQTEPPQDPETYIHRAGRTARAGKEGTCIVLYQNKTQYMMEQI 796
Query: 180 ERDVGCKFEFVSPPVVEDVL 199
E+ G +FE +S P +V+
Sbjct: 797 EQRAGIQFEQMSAPSPSEVM 816
>gi|145347049|ref|XP_001417991.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578219|gb|ABO96284.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 346
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 92/192 (47%), Positives = 118/192 (61%), Gaps = 36/192 (18%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMPSWVK++++K+L P ++ V
Sbjct: 182 LFSATMPSWVKQITKKFL-KPGHV-----------------------------------V 205
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 121
K I FTQTKR ADE++ AL +ASE LHGDI+Q QRERTL FR +F+VL+AT
Sbjct: 206 VDLDKKAICFTQTKRAADELTAALGRRVASEVLHGDIAQAQRERTLQRFRDNRFSVLIAT 265
Query: 122 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 181
DVAARGLDI +VDL+IHYELPND E+FVHR GRTGRAG+ G AI M T + +R +++
Sbjct: 266 DVAARGLDISDVDLVIHYELPNDVESFVHRCGRTGRAGQLGAAIAMHTDRESYMIRRIKK 325
Query: 182 DVGCKFEFVSPP 193
+ GC+F + P
Sbjct: 326 ETGCEFRTIGIP 337
>gi|428169310|gb|EKX38245.1| hypothetical protein GUITHDRAFT_158516 [Guillardia theta CCMP2712]
Length = 397
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 124/188 (65%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
L+SATMP+WVK L++KY + + D+VGN + + I+ AI+ S +S ++
Sbjct: 182 LWSATMPTWVKDLAQKYCKDVVFFDMVGNDSTRTSITIEHIAIACGYDSHANAISRVVKK 241
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 121
Y KGG+ +VF +TK + D ++ + + +HGD+SQ QRERTL FR GKF +LVAT
Sbjct: 242 YGKGGRVLVFCRTKLEVDRLANHPSLKTTARVIHGDVSQLQRERTLQDFRSGKFLILVAT 301
Query: 122 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 181
DVAARG+D+P V+L+I +P D TFVHRSGRTGRAG++G +++ ++ + R + +E
Sbjct: 302 DVAARGIDVPEVELVIQTCVPEDSNTFVHRSGRTGRAGRKGVSVVFYSGGEERDLLEIEE 361
Query: 182 DVGCKFEF 189
++G +F
Sbjct: 362 ELGIQFHL 369
>gi|414886327|tpg|DAA62341.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 317
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 89/204 (43%), Positives = 125/204 (61%), Gaps = 3/204 (1%)
Query: 24 NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSL 83
+DLVGN+ K + +K A+ ++ ++ D+I Y+ GG+TI+FT+TK A E+S
Sbjct: 10 TVDLVGNEKLKASASVKHLALPCNKAARAQVIPDIIRCYSHGGRTIIFTETKDSASELS- 68
Query: 84 ALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN 143
I S ALHGD++Q QRE L GFR GKF VLVAT+VAARGLDI +V LII E P
Sbjct: 69 --GLIHGSRALHGDVAQAQREVILAGFRSGKFQVLVATNVAARGLDINDVQLIIQCEPPR 126
Query: 144 DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA 203
D E ++HRSGRTGRAG G A++++ + +V LER+ G KFE +S P DV +S+
Sbjct: 127 DVEAYIHRSGRTGRAGNTGVAVMLYEPRYKHSVSRLERESGVKFEHISAPQPTDVAQSAG 186
Query: 204 EQVVATLNGVHPESVEFFTPTAQR 227
+ + V + F A++
Sbjct: 187 SEAADAIASVSDSVIPIFRQQAEQ 210
>gi|255081336|ref|XP_002507890.1| predicted protein [Micromonas sp. RCC299]
gi|226523166|gb|ACO69148.1| predicted protein [Micromonas sp. RCC299]
Length = 631
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 128/361 (35%), Positives = 198/361 (54%), Gaps = 21/361 (5%)
Query: 1 MLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WV +S+++L IDLVG++ +K + ++ I+ + + ++ DLI
Sbjct: 216 VLFSATLPKWVADISKRFLVPGYTTIDLVGDEKQKASGSVQHMLINCQWSERTDLVCDLI 275
Query: 60 TVYAKG-GKTIVFTQTKRDADEVSLALTSII--ASEALHGDISQHQRERTLNGFRQGKFT 116
G G+ IVF TKRD E+ AL + ++ALHGD++Q QRE L+GFR+ KF
Sbjct: 276 RAKVPGDGRVIVFCDTKRDCGELQEALQKELEKGAKALHGDVNQSQREVVLDGFRKNKFQ 335
Query: 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 176
LVATDVAARGLDI V+L++ E P + ET++HRSGRTGR G G + + T +
Sbjct: 336 TLVATDVAARGLDISGVELVVQCEPPKEAETYIHRSGRTGRGGATGICVTLCTPRNEWAI 395
Query: 177 RSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG--- 233
++ER G KF + PP +++ ++A+ V+ + VH + + F A+ L+ E
Sbjct: 396 PNIERKGGFKFVRIGPPQPAEMVAAAAKIVIQQVRAVHKGAAKMFMDAARELLAEGAGEH 455
Query: 234 ------TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGF 287
T+ LAAALA+L+G RSL+ G TL T + + + V F
Sbjct: 456 DEGADPTEMLAAALAKLAGHGE-LRQRSLLTSHTGQTTLLFT--AGNNTEIRTPTYVWNF 512
Query: 288 LSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELL---NKQIPPGNTISKITKLPA 344
L ++ ++ + AD + GAVFD+P E+ ++ L + + P TIS +LP
Sbjct: 513 LKQRMDEKDIQLRRLTLQADSK--GAVFDVPSELQEKFLALSDTKGPTPITISVCEELPE 570
Query: 345 L 345
L
Sbjct: 571 L 571
>gi|212721126|ref|NP_001132058.1| uncharacterized protein LOC100193470 [Zea mays]
gi|194693318|gb|ACF80743.1| unknown [Zea mays]
Length = 506
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 113/167 (67%), Gaps = 4/167 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WV KLS ++L + +DLVGN+ K + +K A+ ++ ++ D+I
Sbjct: 310 LLFSATLPEWVNKLSMRFLKVDRKTVDLVGNEKLKASASVKHLALPCNKAARAQVIPDII 369
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y+ GG+TI+FT+TK A E+S I S ALHGD++Q QRE L GFR GKF VLV
Sbjct: 370 RCYSHGGRTIIFTETKDSASELS---GLIHGSRALHGDVAQAQREVILAGFRSGKFQVLV 426
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 166
AT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A++
Sbjct: 427 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVI 473
>gi|300120547|emb|CBK20101.2| unnamed protein product [Blastocystis hominis]
Length = 553
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 184/334 (55%), Gaps = 23/334 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+PSWV+++ KY+ + + +DLV + EK + ++ + ++ +++DLI
Sbjct: 210 LLFSATIPSWVREVMTKYMHPDKVTVDLV-TEKEKASVDVRHLVLRCPWEARAKVIADLI 268
Query: 60 TVYA-KGGKTIVFTQTKRDADEVS--LALTSIIASEALHGDISQHQRERTLNGFRQGKFT 116
VY G+ IVF K+ +E++ L SI + LHGDI Q RE+TL F+ GKF
Sbjct: 269 EVYCGVDGRAIVFCDMKKSCNELAGEECLRSI--AGVLHGDIPQKTREQTLKDFKDGKFR 326
Query: 117 VLVATDVAARGLDIPNVDLIIHYELP------NDPETFVHRSGRTGRAGKEGTAILMFTS 170
LVATDVAARGLDI + L+I+ E P D ET++HRSGRTGRAG++G I + T
Sbjct: 327 CLVATDVAARGLDIQGITLVINREPPATRSGVADVETYIHRSGRTGRAGRKGVCITLSTG 386
Query: 171 -SQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLI 229
+Q ++S+E+ VG F + P D+L++ AE++V + + + + A+ ++
Sbjct: 387 FAQEAVLQSIEKAVGNAFTRIGAPQPSDLLKARAERLVERIGDLDEQLITKMDSLAEEVL 446
Query: 230 EEKGTD---ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMG 286
K +D A+A L G +RS++ +G+VT+ + F + V G
Sbjct: 447 -AKTSDPRAAVARCLCLAVGAFGKMKTRSILTSNEGFVTVMYQSLNPFR----TVSYVWG 501
Query: 287 FLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEE 320
L +P K + + D +GAVFD+PEE
Sbjct: 502 ALRRYFPEDVVTSIKANTMTKDE-RGAVFDVPEE 534
>gi|440297912|gb|ELP90553.1| ATP-dependent RNA helicase DDX50, putative [Entamoeba invadens IP1]
Length = 759
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 119/394 (30%), Positives = 201/394 (51%), Gaps = 20/394 (5%)
Query: 1 MLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WV ++S KYL ++ + ID V + ++ K YA +K + LI
Sbjct: 309 LLFSATVPDWVTEVSEKYLREDHVKID-VTSTTTQMPSNAKHYACMCFPYNKVETIVPLI 367
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y G+TIVF TK++ ++ + + ++++ +HGDI+Q R +T+ GF++ +F+VL+
Sbjct: 368 KTYNPNGRTIVFCDTKKECGDICIKIGEHLSAQMIHGDINQTLRTQTIKGFKEDRFSVLI 427
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARG+DI VDLII +P D +VHR+GRT RAGKEG + ++T ++ + +
Sbjct: 428 ATDVVARGIDISGVDLIIMTRVPKDIPQYVHRAGRTARAGKEGITVTLYTMAEISALGMI 487
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
E+ V KFE + P E + + + + V TAQ++++E+ +
Sbjct: 488 EKSVNFKFERIGVPQPETLARFAVLGLSGDMKDVKKSLYNVHMDTAQQVLDEEKDPKI-- 545
Query: 240 ALAQLSGFSRPPS---SRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAA 296
A+A+L PS SL+ + +T+ ++ S V +S V
Sbjct: 546 AVAKLITLLYKPSRGTDYSLLCGKSELLTVFFNT----TKEIKSTNYVKTLVSTVVGVGC 601
Query: 297 DEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKI---TKLP---ALQDDGP 350
+ K II++D FD EIA++ ++ +I++ KLP + +
Sbjct: 602 MDKIKEVIISED--HNIYFDAFPEIARKFVDMATDNDRSITECYLAQKLPEKLEIHNRFG 659
Query: 351 SSDNYGRFSSR-DRFSRGGGSRFSRGGARGGARG 383
S D+YG + + DR +R GG S G + + G
Sbjct: 660 SRDSYGSYGRQNDRQTRFGGYGSSNYGDKNNSYG 693
>gi|354557785|ref|ZP_08977043.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
gi|353550579|gb|EHC20016.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
Length = 530
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 148/250 (59%), Gaps = 11/250 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP ++KL++ Y+ +P ++ + ++DE I+ T K L +I
Sbjct: 184 MLFSATMPLAIRKLAQHYMKDPKSVAV--SRDELTVPLIEQVFYETRDKIKVDALCRIID 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ G+ I+F +TKR DE+ +L + ++ALHGD+SQ QR+R + FR GK +LV
Sbjct: 242 M-EDIGQAIIFCRTKRGVDELVASLEARGYFADALHGDLSQQQRDRVMKRFRDGKIELLV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI NV +I++++P DPE++VHR GRTGRAG++G AI + +S + R +R +
Sbjct: 301 ATDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLISSKEYRQLRLI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSA----EQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
ER + + P + DV E A EQ++ L H + + P L+EE +
Sbjct: 361 ERLIKTRIIRKELPSLADVSERQADNLKEQLIKLLQKDHLAT---YRPIVSALVEEYDSI 417
Query: 236 ALAAALAQLS 245
+AAA Q +
Sbjct: 418 DVAAAALQFA 427
>gi|323140806|ref|ZP_08075722.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium
succinatutens YIT 12067]
gi|322414722|gb|EFY05525.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium
succinatutens YIT 12067]
Length = 529
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 148/246 (60%), Gaps = 7/246 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP + L++KY+ P N+ + +++E I+ Y T K L L+
Sbjct: 182 LLFSATMPRPILSLTKKYMKAPKNVTI--SKEELTVPLIEQYYFETK--DKIEGLCRLLD 237
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
GK I+F +TK+ D++S+AL+S +E LHGD+SQ+QR+R + FR+G VL+
Sbjct: 238 AEI-DGKLIIFCRTKKGVDDLSIALSSRGYMAEGLHGDLSQNQRDRVMKKFREGAVDVLI 296
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ N+ +I++++P DPE++VHR GRTGRAG G A+ T + R ++ +
Sbjct: 297 ATDVAARGIDVDNITHVINFDIPQDPESYVHRIGRTGRAGNTGVAMTFITPREFRQLKLI 356
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV-HPESVEFFTPTAQRLIEEKGTDALA 238
ER V K + P +V+E +Q+++ + V + + P A+ L+++ + +A
Sbjct: 357 ERTVKTKIQRRQLPTAANVIERQRDQIISKMQTVLELNAYHDYMPIAESLLDDYSAEEVA 416
Query: 239 AALAQL 244
AA +L
Sbjct: 417 AAALKL 422
>gi|255559124|ref|XP_002520584.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223540244|gb|EEF41817.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 254
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/105 (70%), Positives = 86/105 (81%)
Query: 92 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 151
EALHGDISQ QRERTL+GFR G F +LVATDVAARGLD+PNVDL+IHY LPN ETFVHR
Sbjct: 8 EALHGDISQSQRERTLSGFRSGSFNILVATDVAARGLDVPNVDLVIHYALPNCSETFVHR 67
Query: 152 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 196
SGRTGRAGK+GTAIL++T Q R V+ ER++GC+F + VE
Sbjct: 68 SGRTGRAGKKGTAILVYTPDQTRQVKIYEREIGCRFTELPRITVE 112
>gi|300742137|ref|ZP_07072158.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
gi|300381322|gb|EFJ77884.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
Length = 719
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 141/460 (30%), Positives = 221/460 (48%), Gaps = 89/460 (19%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ ++K++++YL++P + + I+ + + K ++ ++ V
Sbjct: 313 LFSATMPNSIRKIAQQYLNDPTEVRV--KTKTTTGANIRQRYMQVMHSHKLDAMTRVLEV 370
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G IVF +TK++ +EV+ L + + A++GDI Q RERT++ R G+ +LVA
Sbjct: 371 ENYDG-IIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRIDILVA 429
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + L+++Y++P+D E++VHR GRTGRAG++G AIL T ++ +R +E
Sbjct: 430 TDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRDGEAILFVTPREKYMLRQIE 489
Query: 181 RDVGCKFEFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
+ K E + P +DV S AEQ+ T + E + FF + E T A
Sbjct: 490 KATRQKVEPMHMPTAQDVNSSRKQRFAEQITET---IETEDLNFFRKIIEDYENEHDTTA 546
Query: 237 --LAAALAQLSGFSR----------PPSSRSLI---------------NH-EQGWVTLQL 268
+AAALA ++ R SR+ NH ++G V +L
Sbjct: 547 EDIAAALAVIAQQGRAFFLDENDDIARKSRAFADDTKDRGKRGPKKGRNHSDEGMVNYKL 606
Query: 269 TRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNK 328
A SR + A +++G L++ +IG I I R + LPE++ K ++
Sbjct: 607 NVGRA-SR--VKASAIVGALANEGGIKGSQIGSIDI----RQHFTIVGLPEDLPKGFFDR 659
Query: 329 QIPPGNTISKITKLPALQDDGPSSDNYGRFSS--RDRFSRGGGSR-FSRGGARGGARGGG 385
+ TK+ G F + +DR +GGG R F R R G
Sbjct: 660 --------LRDTKIA------------GEFINIRKDRGPQGGGGRSFRRNDRRDG----- 694
Query: 386 SMDRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRF 425
GFRS R DD RGGR R G + G R+
Sbjct: 695 -----GFRSRR----DDH------RGGRDDRRGKSHGKRY 719
>gi|194706694|gb|ACF87431.1| unknown [Zea mays]
Length = 255
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 72/110 (65%), Positives = 91/110 (82%), Gaps = 1/110 (0%)
Query: 92 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 151
+ALHGDISQ+QRERTL+GFR G+F +LVATDVAARGLDIPNVDL++HYE+PN E FVHR
Sbjct: 8 QALHGDISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLVVHYEIPNTSELFVHR 67
Query: 152 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF-EFVSPPVVEDVLE 200
SGRT RAGK+G+AIL++T Q R VR +E+D+GC+F E PV ++ +
Sbjct: 68 SGRTARAGKKGSAILIYTYEQTRAVRVIEQDIGCRFTELPKMPVSDEAAD 117
>gi|311740664|ref|ZP_07714491.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311304184|gb|EFQ80260.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 619
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 148/247 (59%), Gaps = 7/247 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS++YLDNP + + + + + I + +K + ++ V
Sbjct: 234 LFSATMPNAIRRLSKQYLDNPAEVTV--KSERRTNDNITQRFLLIPHRAKMDAFTRILEV 291
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
IVF +TK + +EV+ L ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 292 INYDA-IIVFCRTKHETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 350
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + ++++++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 351 TDVAARGLDVERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 410
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEK--GTDAL 237
R + E + P V++V E E+ ++ N + + +FF ++ E+ D +
Sbjct: 411 RVTNARLEEMDLPSVDEVNEKRKEKFAQSITNSMDNKQADFFRTLVRKYSEDNNAAMDDI 470
Query: 238 AAALAQL 244
AAALA +
Sbjct: 471 AAALAVM 477
>gi|255324480|ref|ZP_05365597.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
SK141]
gi|255298386|gb|EET77686.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
SK141]
Length = 619
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 148/247 (59%), Gaps = 7/247 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS++YLDNP + + + + + I + +K + ++ V
Sbjct: 234 LFSATMPNAIRRLSKQYLDNPAEVTV--KSERRTNDNITQRFLLIPHRAKMDAFTRILEV 291
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
IVF +TK + +EV+ L ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 292 INYDA-IIVFCRTKHETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 350
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + ++++++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 351 TDVAARGLDVERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 410
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEK--GTDAL 237
R + E + P V++V E E+ ++ N + + +FF ++ E+ D +
Sbjct: 411 RVTNARLEEMDLPSVDEVNEKRKEKFAQSITNSMDNKQADFFRTLVRKYSEDNNAAMDDI 470
Query: 238 AAALAQL 244
AAALA +
Sbjct: 471 AAALAVM 477
>gi|397905196|ref|ZP_10506067.1| Cold-shock DEAD-box protein A [Caloramator australicus RC3]
gi|397161845|emb|CCJ33401.1| Cold-shock DEAD-box protein A [Caloramator australicus RC3]
Length = 526
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 181/345 (52%), Gaps = 20/345 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP + KL++KYL NP +I +V E I+ K ILS L+
Sbjct: 182 LLFSATMPDPILKLTKKYLKNPEHIKVV--HKELTVPTIEQIYFEVKEAHKIEILSRLLD 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+Y +VF TK+ DEV +L + ++ALHGD+ Q+QR+R + FR G VLV
Sbjct: 240 IY-NPKLALVFCNTKKKVDEVVSSLQARGYLADALHGDMKQNQRDRVMAKFRSGTIDVLV 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ +V+++ +Y++P D E +VHR GRTGRAG+EG A + +R +
Sbjct: 299 ATDVAARGIDVEDVEIVFNYDVPQDEEYYVHRIGRTGRAGREGKAFTFVSGKDIYKLRDI 358
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GVHPESVEFFTPTAQRLIEEKGTDA-L 237
+R K + P + DV ES +++ + ++ ++E ++ +R+I+++ T +
Sbjct: 359 QRYTKTKIKLQKIPTLHDVEESRTSKIIDRIKESINEGNLEKYSDIIERIIDDEYTSLDV 418
Query: 238 AAALAQL-----SGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVY 292
AAAL ++ + + E G V L + +S R ++G ++D
Sbjct: 419 AAALLKIVMSEDKRYDEIEDAFEGTGAEPGMVRLFVNVGKNHK---ISPRDIVGAIADKV 475
Query: 293 PTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 337
D IG+I I + + ++P + A E+L+ I NTI
Sbjct: 476 KLPGDLIGRIDIFD----KFSFVEVPTDYANEVLD--IMKNNTIK 514
>gi|89894700|ref|YP_518187.1| hypothetical protein DSY1954 [Desulfitobacterium hafniense Y51]
gi|89334148|dbj|BAE83743.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 537
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/247 (40%), Positives = 144/247 (58%), Gaps = 12/247 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP +KKL++ Y+ P ++ + ++DE I+ T K L +I
Sbjct: 192 MLFSATMPPEIKKLAQNYMSQPKSVAV--SRDELTVPLIEQVFYETRDKIKVDALCRIID 249
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ G+ I+F +TKR DE+ AL + ++ALHGD+SQ QR+R + FR GK +LV
Sbjct: 250 M-EDIGQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELLV 308
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI NV +I++++P DPE++VHR GRTGRAG++G AI + +S + R +R +
Sbjct: 309 ATDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVSSREYRQLRLI 368
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAE----QVVATLNGVHPESVEFFTPTAQRLIEE-KGT 234
ER + + P + DV E AE Q+V L H + + L+EE
Sbjct: 369 ERLIKTRIVRKELPTLADVSERQAENLKNQLVKILQRSHLGT---YRSIVGSLLEEYDSM 425
Query: 235 DALAAAL 241
D AAAL
Sbjct: 426 DVAAAAL 432
>gi|423074659|ref|ZP_17063384.1| DEAD-box ATP-dependent RNA helicase CshA [Desulfitobacterium
hafniense DP7]
gi|361854479|gb|EHL06545.1| DEAD-box ATP-dependent RNA helicase CshA [Desulfitobacterium
hafniense DP7]
Length = 537
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/247 (40%), Positives = 144/247 (58%), Gaps = 12/247 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP +KKL++ Y+ P ++ + ++DE I+ T K L +I
Sbjct: 192 MLFSATMPPEIKKLAQNYMSQPKSVAV--SRDELTVPLIEQVFYETRDKIKVDALCRIID 249
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ G+ I+F +TKR DE+ AL + ++ALHGD+SQ QR+R + FR GK +LV
Sbjct: 250 M-EDIGQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELLV 308
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI NV +I++++P DPE++VHR GRTGRAG++G AI + +S + R +R +
Sbjct: 309 ATDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVSSREYRQLRLI 368
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAE----QVVATLNGVHPESVEFFTPTAQRLIEE-KGT 234
ER + + P + DV E AE Q+V L H + + L+EE
Sbjct: 369 ERLIKTRIVRKELPTLADVSERQAENLKNQLVKILQRSHLGT---YRSIVGSLLEEYDSM 425
Query: 235 DALAAAL 241
D AAAL
Sbjct: 426 DVAAAAL 432
>gi|209882562|ref|XP_002142717.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
gi|209558323|gb|EEA08368.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
Length = 667
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 133/221 (60%), Gaps = 9/221 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDN------PLNIDLVGNQDEKLAEG--IKLYAISTTATSKR 52
+LFSAT+PSW+KK+ + + N NI + GN+D + I+ AI +
Sbjct: 210 LLFSATVPSWIKKIVNEIMSNDTVTVDVTNISVDGNEDSSDSGNTRIRHLAIQCAYPQRT 269
Query: 53 TILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFR 111
+L D+IT+YA GK I+FT+TK+ A+E+S+ T + LHGDI Q QRE L F+
Sbjct: 270 ALLKDIITMYAGIHGKCIIFTETKQTANEISMRSTISDMCQVLHGDIQQSQREIALQAFK 329
Query: 112 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS 171
+G++ LVATDVAARGL I +V ++I P D +T++HR+GRTGRAGK GTAIL +
Sbjct: 330 EGRYRCLVATDVAARGLHIDDVAVVIQLAPPRDIDTYIHRAGRTGRAGKFGTAILFCNMN 389
Query: 172 QRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG 212
+ ++E+ F+ + P E++L+ +A+ V L G
Sbjct: 390 DYPFLLNIEKIGNINFQRIGAPQFEEILQKTADSVGEYLVG 430
>gi|303277565|ref|XP_003058076.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460733|gb|EEH58027.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 748
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 122/363 (33%), Positives = 191/363 (52%), Gaps = 30/363 (8%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WV +SR++L + + +DLVG++ +K + + ++ + + ++ DLI
Sbjct: 317 LLFSATLPKWVADISRRFLQPDHVTVDLVGDEKQKASAAVTHMLLNCQWSERTELVCDLI 376
Query: 60 TVYAKG-GKTIVFTQTKRDADEVSLALTSII--ASEALHGDISQHQRERTLNGFRQGKFT 116
G G+ IVF TKRD E+ AL + ++ALHGD++Q QRE L GFR KF
Sbjct: 377 RAKVPGDGRVIVFCDTKRDCGELQEALQKELEKGAKALHGDVNQAQREVVLAGFRANKFQ 436
Query: 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 176
LVATDVAARGLDI V+L++ E P +PET++HRSGRTGR G G + + T +
Sbjct: 437 TLVATDVAARGLDISGVELVVQCEPPKEPETYIHRSGRTGRGGATGECVTLCTPRNEWAI 496
Query: 177 RSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIE------ 230
++ER G KF+ ++PP ++ ++A+ V+A + V + + F A+ L+E
Sbjct: 497 PNIERKGGFKFQRIAPPQPAEMAAAAAKIVIAQVRAVAKGAAKMFMDAAKELLEGGAGEH 556
Query: 231 EKGTDA--LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFL 288
++G D + AA +RSL+ G TL + + + V FL
Sbjct: 557 DEGADPTEMLAAALAKLAGHGELRTRSLLTSHTGQTTLLFA--AGGTTEIRTPTYVWNFL 614
Query: 289 SDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDD 348
+ +I ++ + AD + GAVFD+P E+A K T L Q+
Sbjct: 615 RQRLDESDLQIRRLTLCADSK--GAVFDVPSELA--------------DKFTALSENQES 658
Query: 349 GPS 351
GP+
Sbjct: 659 GPT 661
>gi|227501650|ref|ZP_03931699.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
gi|306835824|ref|ZP_07468821.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
gi|227077675|gb|EEI15638.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
gi|304568298|gb|EFM43866.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
Length = 623
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 147/247 (59%), Gaps = 7/247 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS++YL NP + + + + + IK + +K + ++ V
Sbjct: 234 LFSATMPNAIRRLSKQYLHNPAEVTV--KSERRTNDNIKQRFLLIPHRAKMDAFTRILEV 291
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
IVF +TK + +EV+ AL ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 292 ITYDA-IIVFCRTKHETEEVAEALRDRGYSAAAINGDIAQAQRERTVDQLKDGRLDILVA 350
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + ++++++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 351 TDVAARGLDVERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 410
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVV-ATLNGVHPESVEFFTPTAQRLIEEKGT--DAL 237
R + E + P V++V E E+ A + + +FF ++ E+ D +
Sbjct: 411 RVTNARLEEMDLPSVDEVNEKRKEKFAQAITQSMDNKQADFFRNLVRKYSEDNNVAMDDI 470
Query: 238 AAALAQL 244
AAALA +
Sbjct: 471 AAALAVM 477
>gi|431794108|ref|YP_007221013.1| DNA/RNA helicase [Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430784334|gb|AGA69617.1| DNA/RNA helicase, superfamily II [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 531
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 144/247 (58%), Gaps = 12/247 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP +KKL++ Y+ P ++ + ++DE I+ T K L +I
Sbjct: 185 MLFSATMPIEIKKLAQNYMHQPKSVAV--SRDELTVPLIEQVFYETREKIKVDALCRIID 242
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ G+ I+F +TKR DE+ AL + ++ALHGD+SQ QR+R + FR GK +LV
Sbjct: 243 M-EDIGQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELLV 301
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI NV +I++++P DPE++VHR GRTGRAG++G AI + +S + R +R +
Sbjct: 302 ATDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVSSREYRQLRLI 361
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAE----QVVATLNGVHPESVEFFTPTAQRLIEE-KGT 234
ER + + P + DV E AE Q+V + H + + L+EE
Sbjct: 362 ERLIKTRIVRKELPTLADVSERQAENLKNQLVKIIQRSHLGT---YRSIVGSLLEEYDSV 418
Query: 235 DALAAAL 241
D AAAL
Sbjct: 419 DVAAAAL 425
>gi|255326780|ref|ZP_05367856.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
gi|255295997|gb|EET75338.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
Length = 744
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 153/492 (31%), Positives = 233/492 (47%), Gaps = 64/492 (13%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ ++K++++YL++P I + + I + + K ++ ++ V
Sbjct: 251 LFSATMPNSIRKIAQQYLNDPTEIRVKAKT--TTSANISQRYMQVMHSHKLDAMTRVLEV 308
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G IVF +TK++ +EV+ L + A+ A++GDI Q RERT++ R G+ +LVA
Sbjct: 309 ENYDG-IIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILVA 367
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + L+++Y++P+D E++VHR GRTGRAG+EG AIL T ++ +R +E
Sbjct: 368 TDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYMLRQIE 427
Query: 181 RDVGCKFEFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
+ K E + P E V E+ A+Q+ T + E + FF + E T A
Sbjct: 428 KATRQKVEPMHMPTAEAVNETRKQRFAQQITET---IESEDLSFFRQIIEDYENEHDTTA 484
Query: 237 --LAAALAQLSGFSRP----------PSSRSL--------------INHEQGWVTLQLTR 270
+AAALA ++ RP SR ++++G V +L
Sbjct: 485 EDIAAALAVIAQQGRPFFLDESEDIAHKSRPFSDEDSDRGGRKAKRAHNDEGMVNYKLNV 544
Query: 271 DSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQI 330
+ SR ++A +++G L++ +IG I I + G DLP + L + +I
Sbjct: 545 GRS-SR--VTAGAIVGALANEGGIKGSQIGSIDIRQHFTIVGLPEDLPRDFFDRLRDTKI 601
Query: 331 PPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRR 390
G I+ I K DN + R GG G R R G D R
Sbjct: 602 -AGEFIN-IRK-----------DNGPKGGGGGRGFGGGRREGGYRGNREDGRDFGGRDNR 648
Query: 391 ---GFRSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSD----DDWLIGGSRSSRS 443
G+R +R G D RGGR F G R R D D+ GG R +R
Sbjct: 649 REGGYRGNREGGRDFGGDRDFKRGGRDF--GGKRNDRDFGGRDFGGRDNRREGGYRGNRD 706
Query: 444 SSRD--SRSFGG 453
RD R FGG
Sbjct: 707 GGRDFGGRDFGG 718
>gi|114564866|ref|YP_752380.1| DEAD/DEAH box helicase [Shewanella frigidimarina NCIMB 400]
gi|114336159|gb|ABI73541.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
NCIMB 400]
Length = 634
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 141/256 (55%), Gaps = 14/256 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +K+++ K+L NP+NI + +Q E I + + +K L ++ V
Sbjct: 184 LFSATMPEQIKRVAAKHLSNPVNISIASSQ--TTVESIDQRYVQVSQHNKLEALVRVLEV 241
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +T+ E++ L + AS LHGD++Q RER + ++GK +L+A
Sbjct: 242 ENTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGKLDILIA 300
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P D E +VHR GRTGRAG+ G AIL T+ + R +R++E
Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDSEAYVHRIGRTGRAGRTGMAILFVTNREMRMLRTIE 360
Query: 181 RDVGCKFEFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIE--EKGT 234
R + + P E V E EQ+ T+NG ++F L + E T
Sbjct: 361 RATNSRISPMKVPSPESVAERRLSRLGEQIQETING----DLDFMKNAVAELCQQLEVDT 416
Query: 235 DALAAALAQLSGFSRP 250
D LAAAL Q RP
Sbjct: 417 DLLAAALLQQVQQERP 432
>gi|452910044|ref|ZP_21958727.1| Cold-shock DEAD-box protein A [Kocuria palustris PEL]
gi|452835004|gb|EME37802.1| Cold-shock DEAD-box protein A [Kocuria palustris PEL]
Length = 606
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 137/430 (31%), Positives = 205/430 (47%), Gaps = 49/430 (11%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++K++++YL NP I + A I+ + K ++ L+ V
Sbjct: 200 LFSATMPPAIRKIAQRYLRNPEEISVKAKT--STATNIRQRYLQVMGAHKLEAMTRLLEV 257
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G IVF +TK +EV+ L + A+ A++GDI Q RE+++ R GK +LVA
Sbjct: 258 EEHDG-IIVFVRTKAATEEVAEKLRARGHAATAINGDIPQQAREKSVEQLRSGKIDILVA 316
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + L+++Y++P+D E++VHR GRTGRAG+ G AIL T ++ +R++E
Sbjct: 317 TDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRAIE 376
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDAL-- 237
+ E + P VEDV + +Q ++ + + + + F +E+ D L
Sbjct: 377 KTTRQPVEQMPMPSVEDVNRTRVDQFGQSITDTIETQDLSAFREMVTAYVEDHDVDPLEV 436
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +S +P ++ L ++ + R RG + RS G Y A
Sbjct: 437 AAALAVISQGDQPFFAQELPEPKRK----ERDRGERSERGGRTPRSEEG--KATYWMA-- 488
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPA-----LQDDGPSS 352
+G H LP I L N+ G+ I I P+ L DD +
Sbjct: 489 -VGHKH-----------RALPGSIVGALTNEGGLKGSDIGAIEIKPSFTLIGLPDDLSRA 536
Query: 353 D---------NYGRFSSR-DRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDD 402
D N R R DR + G+R RGG RG DRRG RS+R S
Sbjct: 537 DLDRLGAIEINGQRLDIRQDRGPKSSGARSDRGGYRGD-------DRRGGRSARPEHSGG 589
Query: 403 EDGFSSSRGG 412
F+ R G
Sbjct: 590 HKKFTGGRKG 599
>gi|219669142|ref|YP_002459577.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
gi|219539402|gb|ACL21141.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
DCB-2]
Length = 530
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 143/247 (57%), Gaps = 12/247 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP +KKL++ Y+ P ++ + ++DE I+ K L +I
Sbjct: 185 MLFSATMPPEIKKLAQNYMHQPKSVAV--SRDELTVPLIEQVFYEARDKIKVDALCRIID 242
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ G+ I+F +TKR DE+ AL + ++ALHGD+SQ QR+R + FR GK +LV
Sbjct: 243 M-EDIGQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELLV 301
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI NV +I++++P DPE++VHR GRTGRAG++G AI + +S + R +R +
Sbjct: 302 ATDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVSSREYRQLRLI 361
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAE----QVVATLNGVHPESVEFFTPTAQRLIEE-KGT 234
ER + + P + DV E AE Q+V L H + + L+EE
Sbjct: 362 ERLIKTRIIRKELPTLADVSERQAENLKNQLVKILQRSHLGT---YRSIVGSLLEEYDSM 418
Query: 235 DALAAAL 241
D AAAL
Sbjct: 419 DVAAAAL 425
>gi|259090291|pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 168/289 (58%), Gaps = 17/289 (5%)
Query: 43 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQH 101
A+ + +LSDL+ V A + +VFT+TK + +E++ L + ++ALHGD+SQ
Sbjct: 7 AVPAPVRGRLEVLSDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQG 65
Query: 102 QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE 161
+RER + FRQG+ VLVATDVAARGLDIP VDL++HY +P+ E + HRSGRTGRAG+
Sbjct: 66 ERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRG 125
Query: 162 GTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFF 221
G +L++ +RR V +LER VG +F+ V+PP E+VLE+ ++A L V + +
Sbjct: 126 GRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLY 185
Query: 222 TPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT-------LQLTRDSAF 274
A RL E + +AA LA L G + + RSL+ E+GW T L L R A
Sbjct: 186 QDFAGRLFAEGRVEVVAALLALLLGGAP--AERSLLTGEEGWRTYKATGPRLSLPRLVAL 243
Query: 275 SRGF-----MSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLP 318
+G A + GF D+ P A E+ + + RV+G + ++P
Sbjct: 244 LKGQGLEVGKVAEAEGGFYVDLRPEARPEVAGLRLEPARRVEG-LLEIP 291
>gi|239825779|ref|YP_002948403.1| DEAD/DEAH box helicase [Geobacillus sp. WCH70]
gi|239806072|gb|ACS23137.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. WCH70]
Length = 466
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 146/249 (58%), Gaps = 11/249 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ ++++ P + + E I+ Y + K IL+ L+
Sbjct: 179 LLFSATMPEPIRRIAERFMNEPHIVKV--KAKEMTVPNIQQYYLEVQEKKKFDILTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ A IVF +TKR DE++ AL A+E +HGD+SQ +R L F++G +LV
Sbjct: 237 IQAPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T + + ++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLES----SAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
ER K E + PP +++ LE + E++VAT V E++ F+ A+ L+EE +
Sbjct: 356 ERTTKRKMERMKPPTLDEALEGQQRIAVEKLVAT---VESENLSFYKRAAEELLEEHDSV 412
Query: 236 ALAAALAQL 244
+L AA ++
Sbjct: 413 SLVAACIKM 421
>gi|423721477|ref|ZP_17695659.1| DEAD/DEAH box helicase family protein [Geobacillus
thermoglucosidans TNO-09.020]
gi|383365528|gb|EID42823.1| DEAD/DEAH box helicase family protein [Geobacillus
thermoglucosidans TNO-09.020]
Length = 465
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 146/249 (58%), Gaps = 11/249 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ ++++ P + + E I+ Y + K IL+ L+
Sbjct: 179 LLFSATMPEPIRRIAERFMNKPQIVKV--KAKEMTVPNIQQYYLEVQEKKKFDILTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ A IVF +TKR DE++ AL A+E +HGD+SQ +R L F++G +LV
Sbjct: 237 IQAPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T + + ++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLES----SAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
ER K E + PP +++ LE + E+++AT V E++ F+ A+ L+EE +
Sbjct: 356 ERTTKRKMERMKPPTLDEALEGQQRIAVEKLIAT---VETENLSFYKRAAEELLEEHDSV 412
Query: 236 ALAAALAQL 244
+L AA ++
Sbjct: 413 SLVAACIKM 421
>gi|312112527|ref|YP_003990843.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1]
gi|336236996|ref|YP_004589612.1| DEAD/DEAH box helicase [Geobacillus thermoglucosidasius C56-YS93]
gi|311217628|gb|ADP76232.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1]
gi|335363851|gb|AEH49531.1| DEAD/DEAH box helicase domain protein [Geobacillus
thermoglucosidasius C56-YS93]
Length = 465
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 146/249 (58%), Gaps = 11/249 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ ++++ P + + E I+ Y + K IL+ L+
Sbjct: 179 LLFSATMPEPIRRIAERFMNEPQIVKV--KAKEMTVPNIQQYYLEVQEKKKFDILTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ A IVF +TKR DE++ AL A+E +HGD+SQ +R L F++G +LV
Sbjct: 237 IQAPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T + + ++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLES----SAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
ER K E + PP +++ LE + E+++AT V E++ F+ A+ L+EE +
Sbjct: 356 ERTTKRKMERMKPPTLDEALEGQQRIAVEKLIAT---VETENLSFYKRAAEELLEEHDSV 412
Query: 236 ALAAALAQL 244
+L AA ++
Sbjct: 413 SLVAACIKM 421
>gi|358446581|ref|ZP_09157126.1| putative ATP-dependent RNA helicase [Corynebacterium casei UCMA
3821]
gi|356607542|emb|CCE55468.1| putative ATP-dependent RNA helicase [Corynebacterium casei UCMA
3821]
Length = 675
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 145/245 (59%), Gaps = 7/245 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS++YL+NP + + Q + + IK + T +K + ++ V
Sbjct: 239 LFSATMPNGIRRLSKQYLNNPAEVTVKSQQ--RTNDNIKQRFLLTAHRAKLDAFTRILEV 296
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
IVF +TK + +EV+ L + A++GDI+Q+QRERT++ + G+ +LVA
Sbjct: 297 TDYDA-MIVFCRTKHETEEVAEKLRDAGYNAAAINGDIAQNQRERTVDQLKDGRLDILVA 355
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + ++++++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 356 TDVAARGLDVDRITHVVNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 415
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGT--DAL 237
R + E + P V++V E + + V + +E F ++ E D +
Sbjct: 416 RVTNARLEEMELPTVDEVNAKRKENFASQITEVLGDGQMELFRGLVRKYSETNNVAMDDI 475
Query: 238 AAALA 242
AAALA
Sbjct: 476 AAALA 480
>gi|418419638|ref|ZP_12992821.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium abscessus
subsp. bolletii BD]
gi|364001268|gb|EHM22464.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium abscessus
subsp. bolletii BD]
Length = 598
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 102/276 (36%), Positives = 155/276 (56%), Gaps = 25/276 (9%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++L++KYL +P+ I + + AE I I K L+ ++ V
Sbjct: 202 LFSATMPTTIRRLTKKYLHDPVEIKI--DAKTSTAENITQRFIQVAGPRKMDALTRILEV 259
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
IVF +TK+ +EV+ L + A+ A++GDI+Q QRERT+N + G +LVA
Sbjct: 260 ETFEA-MIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKAGTIDILVA 318
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P+D E++VHR GRTGRAG+ GTA+L + +R ++++E
Sbjct: 319 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTAVLFVSPRERHLLKAIE 378
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVV----ATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
+ G K P VEDV +A++V A + VE F +RL+E+ D
Sbjct: 379 KTTGAKLAEEPLPSVEDV---NAQRVTKFRDAITAALAAPEVELF----RRLVEDYERDN 431
Query: 237 ------LAAALAQLS----GFSRPPSSRSLINHEQG 262
+AAALA LS F P HE+G
Sbjct: 432 NVPVADIAAALAVLSRDGEQFLLQPDPPREPRHERG 467
>gi|365869382|ref|ZP_09408929.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|414582556|ref|ZP_11439696.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1215]
gi|420876743|ref|ZP_15340115.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0304]
gi|420881759|ref|ZP_15345123.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0421]
gi|420888066|ref|ZP_15351420.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0422]
gi|420893793|ref|ZP_15357135.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0708]
gi|420898622|ref|ZP_15361958.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0817]
gi|420903935|ref|ZP_15367256.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1212]
gi|420970934|ref|ZP_15434131.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0921]
gi|421048242|ref|ZP_15511238.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|363998839|gb|EHM20045.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|392090420|gb|EIU16233.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0304]
gi|392090814|gb|EIU16625.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0421]
gi|392092626|gb|EIU18431.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0422]
gi|392102383|gb|EIU28170.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0708]
gi|392107863|gb|EIU33645.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0817]
gi|392109193|gb|EIU34971.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1212]
gi|392117708|gb|EIU43476.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1215]
gi|392171906|gb|EIU97579.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0921]
gi|392242407|gb|EIV67894.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
CCUG 48898]
Length = 598
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 102/276 (36%), Positives = 155/276 (56%), Gaps = 25/276 (9%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++L++KYL +P+ I + + AE I I K L+ ++ V
Sbjct: 202 LFSATMPTTIRRLTKKYLHDPVEIKI--DAKTSTAENITQRFIQVAGPRKMDALTRILEV 259
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
IVF +TK+ +EV+ L + A+ A++GDI+Q QRERT+N + G +LVA
Sbjct: 260 ETFEA-MIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKAGTIDILVA 318
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P+D E++VHR GRTGRAG+ GTA+L + +R ++++E
Sbjct: 319 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTAVLFVSPRERHLLKAIE 378
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVV----ATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
+ G K P VEDV +A++V A + VE F +RL+E+ D
Sbjct: 379 KTTGAKLAEEPLPSVEDV---NAQRVTKFRDAITAALAAPEVELF----RRLVEDYERDN 431
Query: 237 ------LAAALAQLS----GFSRPPSSRSLINHEQG 262
+AAALA LS F P HE+G
Sbjct: 432 NVPVADIAAALAVLSRDGEQFLLQPDPPREPRHERG 467
>gi|169628494|ref|YP_001702143.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
ATCC 19977]
gi|419716620|ref|ZP_14244016.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M94]
gi|420863361|ref|ZP_15326754.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0303]
gi|420867758|ref|ZP_15331143.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RA]
gi|420872190|ref|ZP_15335570.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RB]
gi|420908973|ref|ZP_15372286.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-R]
gi|420915356|ref|ZP_15378661.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-S]
gi|420919746|ref|ZP_15383044.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-S]
gi|420926243|ref|ZP_15389528.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-1108]
gi|420965711|ref|ZP_15428925.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0810-R]
gi|420976589|ref|ZP_15439771.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0212]
gi|420981969|ref|ZP_15445139.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-R]
gi|420986517|ref|ZP_15449678.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0206]
gi|421006515|ref|ZP_15469630.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0119-R]
gi|421011836|ref|ZP_15474929.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-R]
gi|421016756|ref|ZP_15479823.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-S]
gi|421022668|ref|ZP_15485716.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0731]
gi|421028023|ref|ZP_15491060.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-R]
gi|421033882|ref|ZP_15496904.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-S]
gi|421039073|ref|ZP_15502084.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-R]
gi|421042545|ref|ZP_15505550.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-S]
gi|169240461|emb|CAM61489.1| Probable cold-shock DEAD box protein A homolog (ATP-dependent RNA
helicase DEAD homolog) [Mycobacterium abscessus]
gi|382940906|gb|EIC65228.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M94]
gi|392073161|gb|EIT99001.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RA]
gi|392073881|gb|EIT99719.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0303]
gi|392076379|gb|EIU02212.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RB]
gi|392121347|gb|EIU47112.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-R]
gi|392123040|gb|EIU48802.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-S]
gi|392133751|gb|EIU59493.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-S]
gi|392138651|gb|EIU64384.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-1108]
gi|392170848|gb|EIU96525.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0212]
gi|392173987|gb|EIU99653.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-R]
gi|392187934|gb|EIV13573.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0206]
gi|392202267|gb|EIV27864.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0119-R]
gi|392210240|gb|EIV35810.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-R]
gi|392215365|gb|EIV40913.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0731]
gi|392215856|gb|EIV41403.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-S]
gi|392227287|gb|EIV52801.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-R]
gi|392230423|gb|EIV55933.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-S]
gi|392231929|gb|EIV57433.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-R]
gi|392241611|gb|EIV67099.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-S]
gi|392257699|gb|EIV83148.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0810-R]
Length = 598
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 102/276 (36%), Positives = 155/276 (56%), Gaps = 25/276 (9%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++L++KYL +P+ I + + AE I I K L+ ++ V
Sbjct: 202 LFSATMPTTIRRLTKKYLHDPVEIKI--DAKTSTAENITQRFIQVAGPRKMDALTRILEV 259
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
IVF +TK+ +EV+ L + A+ A++GDI+Q QRERT+N + G +LVA
Sbjct: 260 ETFEA-MIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKAGTIDILVA 318
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P+D E++VHR GRTGRAG+ GTA+L + +R ++++E
Sbjct: 319 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTAVLFVSPRERHLLKAIE 378
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVV----ATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
+ G K P VEDV +A++V A + VE F +RL+E+ D
Sbjct: 379 KTTGAKLAEEPLPSVEDV---NAQRVTKFRDAITAALAAPEVELF----RRLVEDYERDN 431
Query: 237 ------LAAALAQLS----GFSRPPSSRSLINHEQG 262
+AAALA LS F P HE+G
Sbjct: 432 NVPVADIAAALAVLSRDGEQFLLQPDPPREPRHERG 467
>gi|397678974|ref|YP_006520509.1| cold-shock DEAD box protein A-like protein [Mycobacterium
massiliense str. GO 06]
gi|418249081|ref|ZP_12875403.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
47J26]
gi|419711589|ref|ZP_14239052.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M93]
gi|420930546|ref|ZP_15393822.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-151-0930]
gi|420936028|ref|ZP_15399297.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-152-0914]
gi|420940798|ref|ZP_15404060.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-153-0915]
gi|420946105|ref|ZP_15409358.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-154-0310]
gi|420951063|ref|ZP_15414309.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0626]
gi|420955234|ref|ZP_15418473.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0107]
gi|420960958|ref|ZP_15424186.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-1231]
gi|420991202|ref|ZP_15454354.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0307]
gi|420997038|ref|ZP_15460178.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-R]
gi|421001472|ref|ZP_15464602.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-S]
gi|353450736|gb|EHB99130.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
47J26]
gi|382938911|gb|EIC63240.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M93]
gi|392139564|gb|EIU65296.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-151-0930]
gi|392141543|gb|EIU67268.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-152-0914]
gi|392151585|gb|EIU77293.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-153-0915]
gi|392159313|gb|EIU85009.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-154-0310]
gi|392160840|gb|EIU86531.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0626]
gi|392189282|gb|EIV14916.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-R]
gi|392190213|gb|EIV15845.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0307]
gi|392200290|gb|EIV25896.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-S]
gi|392254023|gb|EIV79490.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-1231]
gi|392255762|gb|EIV81223.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0107]
gi|395457239|gb|AFN62902.1| Cold-shock DEAD box protein A-like protein [Mycobacterium
massiliense str. GO 06]
Length = 598
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 102/276 (36%), Positives = 155/276 (56%), Gaps = 25/276 (9%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++L++KYL +P+ I + + AE I I K L+ ++ V
Sbjct: 202 LFSATMPTTIRRLTKKYLHDPVEIKI--DAKTSTAENITQRFIQVAGPRKMDALTRILEV 259
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
IVF +TK+ +EV+ L + A+ A++GDI+Q QRERT+N + G +LVA
Sbjct: 260 ETFEA-MIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKAGTIDILVA 318
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P+D E++VHR GRTGRAG+ GTA+L + +R ++++E
Sbjct: 319 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTAVLFVSPRERHLLKAIE 378
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVV----ATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
+ G K P VEDV +A++V A + VE F +RL+E+ D
Sbjct: 379 KTTGAKLAEEPLPSVEDV---NAQRVTKFRDAITAALAAPEVELF----RRLVEDYERDN 431
Query: 237 ------LAAALAQLS----GFSRPPSSRSLINHEQG 262
+AAALA LS F P HE+G
Sbjct: 432 NVPVADIAAALAVLSRDGEQFLLQPDPPREPRHERG 467
>gi|392394099|ref|YP_006430701.1| DNA/RNA helicase [Desulfitobacterium dehalogenans ATCC 51507]
gi|390525177|gb|AFM00908.1| DNA/RNA helicase, superfamily II [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 530
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 87/207 (42%), Positives = 128/207 (61%), Gaps = 4/207 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP +KKL++ Y+ P ++ + ++DE I+ K L +I
Sbjct: 185 MLFSATMPPEIKKLAQNYMSQPKSVAV--SRDELTVPLIEQVFYEARDKIKVDALCRIID 242
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ G+ I+F +TKR DE+ AL + ++ALHGD+SQ QR+R + FR GK +LV
Sbjct: 243 M-EDIGQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELLV 301
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI NV +I++++P DPE++VHR GRTGRAG++G AI + +S + R +R +
Sbjct: 302 ATDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLISSREYRQLRLI 361
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQV 206
ER + + P + DV E AE +
Sbjct: 362 ERLIKTRIVRKELPTLADVSERQAENL 388
>gi|296119482|ref|ZP_06838040.1| putative cold shock DEAD-box protein A [Corynebacterium
ammoniagenes DSM 20306]
gi|295967365|gb|EFG80632.1| putative cold shock DEAD-box protein A [Corynebacterium
ammoniagenes DSM 20306]
Length = 658
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 145/245 (59%), Gaps = 7/245 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS+KYL++P + + Q + + IK + T +K + ++ V
Sbjct: 239 LFSATMPNSIRRLSKKYLNSPAEVTVKSEQ--RTNDNIKQRFLLTAHRAKLDAFTRILEV 296
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
IVF +TK + +EV+ L + A++GDI+Q+QRERT++ + G+ +LVA
Sbjct: 297 TDYDA-MIVFCRTKHETEEVAEKLRDAGYNAAAINGDIAQNQRERTVDQLKDGRLDILVA 355
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + ++++++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 356 TDVAARGLDVDRITHVVNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 415
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGT--DAL 237
R + E + P V++V E + + V + +E F ++ E D +
Sbjct: 416 RVTNARLEEMELPTVDEVNAKRKENFASQITEVLGDGQMELFRGLVRKYSENNNVAMDDI 475
Query: 238 AAALA 242
AAALA
Sbjct: 476 AAALA 480
>gi|343087345|ref|YP_004776640.1| DEAD/DEAH box helicase [Cyclobacterium marinum DSM 745]
gi|342355879|gb|AEL28409.1| DEAD/DEAH box helicase domain protein [Cyclobacterium marinum DSM
745]
Length = 565
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/231 (39%), Positives = 140/231 (60%), Gaps = 16/231 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+ FSATMP + +L+RKY +P I ++ + E E I + K ++S LI
Sbjct: 183 VFFSATMPKPILELTRKYQTDPEIIKVL--RKELTVENISQLYFDVRSGLKTDLISRLIN 240
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
++ + +++F TKR DEV+ LT+ I +EALHGD+SQ QR + +N FR+G +VLV
Sbjct: 241 LH-QYKLSVIFCNTKRVTDEVTEELTAKGIPAEALHGDLSQAQRTKVMNKFRKGHCSVLV 299
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT--VR 177
ATDVAARG+D+ NV+ + +Y+LP D E +VHR GRTGRAG+ GTAI F S +R + +R
Sbjct: 300 ATDVAARGIDVENVEAVFNYDLPLDEENYVHRIGRTGRAGRSGTAI-SFVSGRRDSGRLR 358
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATL---------NGVHPESVE 219
LER + E +PP V+ +++ +Q+ + N ++ ++VE
Sbjct: 359 DLERFIKTTIEKAAPPSVDQLIQMKKDQLTKDIHRQLAKEEDNSIYEQAVE 409
>gi|406663218|ref|ZP_11071284.1| DEAD-box ATP-dependent RNA helicase CshA [Cecembia lonarensis LW9]
gi|405552735|gb|EKB48086.1| DEAD-box ATP-dependent RNA helicase CshA [Cecembia lonarensis LW9]
Length = 570
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/209 (41%), Positives = 127/209 (60%), Gaps = 5/209 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+ FSATMP + L+RKY DNP + ++ + E E I + K ++S LI
Sbjct: 183 VFFSATMPKPIMDLTRKYQDNPEIVKVL--RKELTVENISQVYYEVKPSLKLELMSRLIN 240
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + ++VF TKR DEV+ L + I +EALHGD+SQ QR + +N FR+G +VLV
Sbjct: 241 L-NQFQLSVVFCNTKRVTDEVTEELIARGITAEALHGDLSQAQRTKVMNKFRKGHVSVLV 299
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR-TVRS 178
ATDVAARG+D+ NV+ + +++LP D E +VHR GRTGRAGK G AI T + +R
Sbjct: 300 ATDVAARGIDVDNVEAVFNFDLPLDEENYVHRIGRTGRAGKSGAAISFVTGRKDMFRIRD 359
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVV 207
LE+ + ++PP V D++E EQ++
Sbjct: 360 LEKFIKTSISKMAPPSVADLIELKKEQLI 388
>gi|126175951|ref|YP_001052100.1| DEAD/DEAH box helicase [Shewanella baltica OS155]
gi|152999102|ref|YP_001364783.1| DEAD/DEAH box helicase [Shewanella baltica OS185]
gi|217971789|ref|YP_002356540.1| DEAD/DEAH box helicase [Shewanella baltica OS223]
gi|386342704|ref|YP_006039070.1| DEAD/DEAH box helicase [Shewanella baltica OS117]
gi|125999156|gb|ABN63231.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
gi|151363720|gb|ABS06720.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
gi|217496924|gb|ACK45117.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
gi|334865105|gb|AEH15576.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS117]
Length = 640
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 144/256 (56%), Gaps = 14/256 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +K+++ ++L NP+++ + +Q E I+ + + +K L ++ V
Sbjct: 184 LFSATMPEQIKRVANQHLRNPVHVRIESSQ--TTVESIEQRFVQVSQHNKLEALVRVLEV 241
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +T+ E++ L + AS LHGD++Q RER ++ ++GK +L+A
Sbjct: 242 ENTEG-VIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIA 300
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P D E +VHR GRTGRAG+ G AIL TS + R +R++E
Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360
Query: 181 RDVGCKFEFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIE--EKGT 234
R + + P E V E EQ+ T+NG ++F +L + E T
Sbjct: 361 RSTNSRISPMKIPSPETVAERRLSRLGEQLAETING----DLDFMKEAVAQLCQQLEVDT 416
Query: 235 DALAAALAQLSGFSRP 250
D LAAAL Q RP
Sbjct: 417 DLLAAALLQQVQQERP 432
>gi|160873699|ref|YP_001553015.1| DEAD/DEAH box helicase [Shewanella baltica OS195]
gi|373951054|ref|ZP_09611015.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
gi|378706943|ref|YP_005271837.1| DEAD/DEAH box helicase [Shewanella baltica OS678]
gi|386323127|ref|YP_006019244.1| DEAD/DEAH box helicase [Shewanella baltica BA175]
gi|418025621|ref|ZP_12664598.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|160859221|gb|ABX47755.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
gi|315265932|gb|ADT92785.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
gi|333817272|gb|AEG09938.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
gi|353534882|gb|EHC04447.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|373887654|gb|EHQ16546.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
Length = 640
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 144/256 (56%), Gaps = 14/256 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +K+++ ++L NP+++ + +Q E I+ + + +K L ++ V
Sbjct: 184 LFSATMPEQIKRVANQHLRNPVHVRIESSQ--TTVESIEQRFVQVSQHNKLEALVRVLEV 241
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +T+ E++ L + AS LHGD++Q RER ++ ++GK +L+A
Sbjct: 242 ENTEG-VIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIA 300
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P D E +VHR GRTGRAG+ G AIL TS + R +R++E
Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360
Query: 181 RDVGCKFEFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIE--EKGT 234
R + + P E V E EQ+ T+NG ++F +L + E T
Sbjct: 361 RSTNSRISPMKIPSPETVAERRLSRLGEQLAETING----DLDFMKEAVAQLCQQLEVDT 416
Query: 235 DALAAALAQLSGFSRP 250
D LAAAL Q RP
Sbjct: 417 DLLAAALLQQVQQERP 432
>gi|444725163|gb|ELW65741.1| Nucleolar RNA helicase 2 [Tupaia chinensis]
Length = 1339
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 103/271 (38%), Positives = 149/271 (54%), Gaps = 44/271 (16%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 223 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 282
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 283 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 342
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P
Sbjct: 343 VATNVAARGLDIPEVDLVIQSSPPQ----------------------------------- 367
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 368 -----GITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 422
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
AAALA +SG S RSLI ++G+VT+ L
Sbjct: 423 AAALAHISGASS-FEPRSLITSDKGFVTMTL 452
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/271 (36%), Positives = 149/271 (54%), Gaps = 44/271 (16%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 1007 LLFSATCPHWVFNVAKKYMKPSYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 1066
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S + +++LHGDI Q QRE TL GFR G F VL
Sbjct: 1067 RVYSGHQGRTIIFCETKKEAQELSQNTSIKQDAQSLHGDIPQKQREITLKGFRNGNFGVL 1126
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P
Sbjct: 1127 VATNVAARGLDIPEVDLVVQCSPPK----------------------------------- 1151
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 1152 -----GIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 1206
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
AAALA +SG + RSLIN G+VT+ L
Sbjct: 1207 AAALAHISG-ATSVDQRSLINSNVGFVTMIL 1236
>gi|56418761|ref|YP_146079.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
gi|81675946|sp|Q5L3G9.1|CSHA_GEOKA RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|56378603|dbj|BAD74511.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
Length = 467
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 143/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ ++++ P + + E I+ Y + K IL+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMNEPELVKV--KAKEMTVPNIQQYYLEVHEKKKFDILTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ A IVF +TKR DE++ AL A+E +HGD+SQ +R L F++G +LV
Sbjct: 237 IQAPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T + + +
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVV-ATLNGVHPESVEFFTPTAQRLIEEKGTDALA 238
ER K E + PP +++ LE + LN V E++ F+ A+ L+EE D++
Sbjct: 356 ERTTKRKMERMKPPTLDEALEGQQRIAIEKLLNVVETENLSFYKRAAEELLEEH--DSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L +R P +
Sbjct: 414 IVAACLKMLTREPDT 428
>gi|91794665|ref|YP_564316.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
gi|91716667|gb|ABE56593.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 611
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 140/256 (54%), Gaps = 14/256 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +K+++ K+L NP+NI + + E I + + +K L ++ V
Sbjct: 185 LFSATMPEQIKRVAAKHLTNPVNISIAAST--TTVESIDQRFVQVSQHNKLEALVRVLEV 242
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +T+ E++ L + AS LHGD++Q RER ++ ++GK +L+A
Sbjct: 243 ENTEG-VIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIA 301
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P D E +VHR GRTGRAG+ G AIL TS + R +R++E
Sbjct: 302 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 361
Query: 181 RDVGCKFEFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIE--EKGT 234
R + + P E V E E + TLNG ++F L + E T
Sbjct: 362 RATNSRIAPMKVPSPESVAERRLSRLGELIQETLNG----DLDFMKSAVAELCQQLEVDT 417
Query: 235 DALAAALAQLSGFSRP 250
D LAAAL Q RP
Sbjct: 418 DLLAAALLQQVQAERP 433
>gi|375007039|ref|YP_004980670.1| DEAD-box ATP-dependent RNA helicase cshA [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|359285886|gb|AEV17570.1| DEAD-box ATP-dependent RNA helicase cshA [Geobacillus
thermoleovorans CCB_US3_UF5]
Length = 467
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 143/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ ++++ P + + E I+ Y + K IL+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMNEPELVKV--KAKEMTVPNIQQYYLEVHEKKKFDILTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ A IVF +TKR DE++ AL A+E +HGD+SQ +R L F++G +LV
Sbjct: 237 IQAPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T + + +
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVV-ATLNGVHPESVEFFTPTAQRLIEEKGTDALA 238
ER K E + PP +++ LE + LN V E++ F+ A+ L+EE D++
Sbjct: 356 ERTTKRKMERMKPPTLDEALEGQQRIAIEKLLNVVETENLSFYKRAAEELLEEH--DSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L +R P +
Sbjct: 414 IVAACLKMLTREPDT 428
>gi|261418549|ref|YP_003252231.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC61]
gi|297528577|ref|YP_003669852.1| DEAD/DEAH box helicase [Geobacillus sp. C56-T3]
gi|319765363|ref|YP_004130864.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC52]
gi|448236523|ref|YP_007400581.1| DEAD-box ATP-dependent RNA helicase [Geobacillus sp. GHH01]
gi|261375006|gb|ACX77749.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC61]
gi|297251829|gb|ADI25275.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. C56-T3]
gi|317110229|gb|ADU92721.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC52]
gi|445205365|gb|AGE20830.1| DEAD-box ATP-dependent RNA helicase [Geobacillus sp. GHH01]
Length = 467
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 143/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ ++++ P + + E I+ Y + K IL+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMNEPELVKV--KAKEMTVPNIQQYYLEVHEKKKFDILTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ A IVF +TKR DE++ AL A+E +HGD+SQ +R L F++G +LV
Sbjct: 237 IQAPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T + + +
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVV-ATLNGVHPESVEFFTPTAQRLIEEKGTDALA 238
ER K E + PP +++ LE + LN V E++ F+ A+ L+EE D++
Sbjct: 356 ERTTKRKMERMKPPTLDEALEGQQRIAIEKLLNVVETENLSFYKRAAEELLEEH--DSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L +R P +
Sbjct: 414 IVAACLKMLTREPDT 428
>gi|383808644|ref|ZP_09964182.1| DEAD/DEAH box helicase / helicase C-terminal domain / DbpA RNA
binding domain multi-domain protein [Rothia aeria F0474]
gi|383448538|gb|EID51497.1| DEAD/DEAH box helicase / helicase C-terminal domain / DbpA RNA
binding domain multi-domain protein [Rothia aeria F0474]
Length = 699
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 147/251 (58%), Gaps = 13/251 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMPS ++K++++YL++P + + I+ + T + K ++ ++ V
Sbjct: 283 LFSATMPSSIRKIAQQYLNDPTEVRV--KTKTTTGANIRQRYMQVTHSHKLDAMTRVLEV 340
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G IVF +TK++ +EV+ L + + A++GDI Q RERT++ R G+ +LVA
Sbjct: 341 ENYDG-IIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRIDILVA 399
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + L+++Y++P+D E++VHR GRTGRAG++G AIL T +R +R +E
Sbjct: 400 TDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRDGEAILFVTPRERYMLRQIE 459
Query: 181 RDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
+ K E + P +DV + AEQ+ T + E ++FF Q E A
Sbjct: 460 KATRQKVEPMRMPTAQDVNANRKQRFAEQITTT---IETEDLDFFRQIIQDYENEHDITA 516
Query: 237 --LAAALAQLS 245
+AAALA ++
Sbjct: 517 EDIAAALAVIA 527
>gi|376260079|ref|YP_005146799.1| DNA/RNA helicase [Clostridium sp. BNL1100]
gi|373944073|gb|AEY64994.1| DNA/RNA helicase, superfamily II [Clostridium sp. BNL1100]
Length = 564
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 147/260 (56%), Gaps = 17/260 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP + +L++KY +P++I + E I+ Y + ++K +LS LI
Sbjct: 182 ILFSATMPKEILELTKKYQKDPVHIKIA--HKELTVPSIEQYYLEVKESAKLEVLSRLID 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
++VF TK+ DE++ +L S ++EALHGD+ Q R++ ++ FR+G F +L+
Sbjct: 240 T-NDIKLSLVFCNTKKRVDELTASLQSRGFSAEALHGDMRQEHRDKVMSLFRKGNFDILI 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ +V+ + +Y+LPND E +VHR GRTGRAG+ G A + + +R +
Sbjct: 299 ATDVAARGIDVDDVEAVFNYDLPNDEEYYVHRIGRTGRAGRTGKAFTFISGREMYKLRDI 358
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GVHPESVEFFTPTAQRLI-------EE 231
+R + PP + +V E ++ TL + ES+ F +R I EE
Sbjct: 359 QRYTKSTIVPMKPPSLNEVEEKKMLNILKTLKENLKDESISKFVSHIERFIDTINNESEE 418
Query: 232 KGTD-----ALAAALAQLSG 246
+G + +AAAL ++ G
Sbjct: 419 QGENFVTSLDIAAALLKMYG 438
>gi|366166269|ref|ZP_09466024.1| DEAD/DEAH box helicase [Acetivibrio cellulolyticus CD2]
Length = 544
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 119/201 (59%), Gaps = 4/201 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP + L+ KYL NPL+I Q I+ + + + +SK ILS LI
Sbjct: 182 ILFSATMPKEILDLTSKYLKNPLHIKAAHKQ--MTVPSIEQFYLEVSQSSKLEILSRLID 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
G ++VF TKR DE++ +L S ++EALHGD+ Q QR R + FR+G+ +L+
Sbjct: 240 A-NNIGLSLVFCNTKRQVDELTSSLQSRGYSTEALHGDMKQDQRNRVMTKFRKGQIDILI 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ NV+ + +Y+LP+D E +VHR GRTGRAGK G + + ++ +
Sbjct: 299 ATDVAARGIDVDNVEAVFNYDLPSDEEYYVHRIGRTGRAGKTGKSFTFVVGREIHKLKDI 358
Query: 180 ERDVGCKFEFVSPPVVEDVLE 200
+R + PP DV E
Sbjct: 359 QRYTKSTIHLIKPPTAMDVEE 379
>gi|254425384|ref|ZP_05039102.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
gi|196192873|gb|EDX87837.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
Length = 570
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 145/247 (58%), Gaps = 7/247 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ ++K+++KYL++P + V NQ K A+ I+ + K L+ ++ V
Sbjct: 185 LFSATMPAAIRKIAQKYLNSPQEL-AVKNQS-KTADTIRQRFWPVSGYHKLDALTRILEV 242
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTVLVA 120
G IVF +TK E+S L + + A L GD+ Q+QRERT+ RQGK +LVA
Sbjct: 243 EDFDG-MIVFVRTKVATVELSEKLEARGYNTAPLSGDVPQNQRERTVERLRQGKLDILVA 301
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +I+Y++P DPE +VHR GRTGRAG+EG AIL T ++R + S+E
Sbjct: 302 TDVAARGLDVERISHVINYDMPYDPEAYVHRIGRTGRAGREGEAILFVTPREKRLLSSIE 361
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDA--L 237
R + E + P E V + E+ + N + E FFT ++ +E A +
Sbjct: 362 RSTRQRIERMEMPSTEVVNDQRIERFKQKITNALAQEDSAFFTQILEQYEQEHDVPAIEI 421
Query: 238 AAALAQL 244
A ALA+L
Sbjct: 422 AGALAKL 428
>gi|323650132|gb|ADX97152.1| DEAD (asp-glu-ala-asp) box polypeptide 21 [Perca flavescens]
Length = 256
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 138/237 (58%), Gaps = 7/237 (2%)
Query: 90 ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 149
++ ALHGDI Q QRE TL FR G F VLVAT+VAARGLDIP VDL++ P D E+++
Sbjct: 2 STRALHGDIPQKQREITLKSFRNGGFEVLVATNVAARGLDIPEVDLVVQCSPPKDVESYI 61
Query: 150 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 209
HRSGRTGRAG+ G I + + +R +E G F V P D+++SS++ V
Sbjct: 62 HRSGRTGRAGRTGVCICFYQRKEEDQLRYVENKAGITFRRVGVPTANDIIKSSSKDAVRF 121
Query: 210 LNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
L+ V ++ +F +A++LIEE+G DALAAALA +SG + RSL+N + G+ T+Q+
Sbjct: 122 LDSVPAAAIGYFRSSAEKLIEERGAVDALAAALAHISG-ATSLEQRSLLNSDAGYTTVQM 180
Query: 269 TRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKEL 325
+ +S+ L + + + I ++ + G FD+P + KE+
Sbjct: 181 VCSQEMHNLGYAWKSIKEQLGEEF---ENHIQRMTFLKGK--TGVCFDVPADKVKEI 232
>gi|170754257|ref|YP_001782408.1| DEAD/DEAH box helicase [Clostridium botulinum B1 str. Okra]
gi|429244877|ref|ZP_19208296.1| DEAD/DEAH box helicase [Clostridium botulinum CFSAN001628]
gi|169119469|gb|ACA43305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum B1 str. Okra]
gi|428758067|gb|EKX80520.1| DEAD/DEAH box helicase [Clostridium botulinum CFSAN001628]
Length = 524
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 160/317 (50%), Gaps = 26/317 (8%)
Query: 1 MLFSATMPSWVKKLSRKY----------LDNPLNIDLVGNQDEKLAEGIKLYAISTTATS 50
MLFSATMP+ +KKL+ Y L L +D + + KL AI S
Sbjct: 183 MLFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRIIDS 242
Query: 51 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNG 109
+ + I+F +TKR DE+ A+ S E +HGD+SQ+QR TL
Sbjct: 243 E------------EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKK 290
Query: 110 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 169
F++ LVATDVAARG+D+ N+ +I+Y++P D E++VHR GRTGRA KEGTA + T
Sbjct: 291 FKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVT 350
Query: 170 SSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRL 228
+ ++R +ER + K P +ED+LE + ++ + + E F P + L
Sbjct: 351 PREVSSIRQIERIIKSKITKKELPTLEDILEKKYDNLLNDITSKIEENKYEKFMPMVKTL 410
Query: 229 IEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFL 288
+ ++AAL ++ FS+ S N + V ++L S + ++ +S++ F+
Sbjct: 411 EQNFDLSEVSAALMEML-FSKEMSFDYTNNKLEAEVPVRLFL-SVGRKDSINVKSLLTFI 468
Query: 289 SDVYPTAADEIGKIHII 305
D EIG I I+
Sbjct: 469 QDSSSVKNHEIGDIDIL 485
>gi|220929887|ref|YP_002506796.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
gi|220000215|gb|ACL76816.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
H10]
Length = 565
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 133/232 (57%), Gaps = 5/232 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP + +L++KY NP++I + E I+ Y + ++K +LS LI
Sbjct: 182 ILFSATMPKEILELTKKYQKNPVHIKIA--HKELTVPSIEQYYLEVKESAKLEVLSRLID 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
++VF TK+ DE++ +L S ++EALHGD+ Q R++ +N FR+G F +L+
Sbjct: 240 T-NDIKLSLVFCNTKKRVDELTASLQSRGFSAEALHGDMRQEHRDKVMNLFRKGNFDILI 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ +V+ + +Y+LPND E +VHR GRTGRAG+ G A + +R +
Sbjct: 299 ATDVAARGIDVDDVEAVFNYDLPNDDEYYVHRIGRTGRAGRTGKAFTFIYGREMYKLRDI 358
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GVHPESVEFFTPTAQRLIE 230
+R + PP + +V E ++ L + ESV F +R I+
Sbjct: 359 QRYTKSTIIPMKPPSLNEVEEKKMSNILKALKENLKDESVSKFASHIERFID 410
>gi|326204124|ref|ZP_08193984.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
DSM 2782]
gi|325985635|gb|EGD46471.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
DSM 2782]
Length = 564
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 148/260 (56%), Gaps = 17/260 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP + +L++KY +P++I + E I+ Y + ++K +LS LI
Sbjct: 182 ILFSATMPKEILELTKKYQKDPVHIKIA--HKELTVPSIEQYYLEVKESAKLEVLSRLID 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
++VF TK+ DE++ +L S ++EALHGD+ Q R++ ++ FR+G F +L+
Sbjct: 240 T-NDIKLSLVFCNTKKRVDELTASLQSRGFSAEALHGDMRQEHRDKVMSLFRKGNFDILI 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ +V+ + +Y+LPND E +VHR GRTGRAG+ G A + + +R +
Sbjct: 299 ATDVAARGIDVDDVEAVFNYDLPNDEEYYVHRIGRTGRAGRTGKAFTFISGREMYKLRDI 358
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLI-------EE 231
+R + PP + +V E ++ TL + + +S+ F +R I EE
Sbjct: 359 QRYTKSTIVAMKPPSLNEVEEKKMLNILKTLKDNLKDDSISKFVSHIERFIDTINNESEE 418
Query: 232 KGTD-----ALAAALAQLSG 246
+G + +AAAL ++ G
Sbjct: 419 QGENFVTSLDVAAALLKMYG 438
>gi|163758551|ref|ZP_02165638.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
gi|162283841|gb|EDQ34125.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
Length = 508
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 121/194 (62%), Gaps = 4/194 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++LS ++L +P+ + ++ +K A+ ++ + +K L+ LI
Sbjct: 191 LLFSATMPKEIRQLSDRHLTDPIEVSVI--PAKKTADRVEHSVMHMQPGAKMGALASLIR 248
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
KG + IVFT+TKR AD+ + L I + A+HG+ SQ QRER L GFR G VL+
Sbjct: 249 -DRKGERVIVFTRTKRGADKAAKRLEGDGINAAAIHGNKSQGQRERALAGFRAGTVPVLI 307
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATD+AARG+D+P V L+++YELPN PE +VHR GRT RAG EGTA+ +R +R +
Sbjct: 308 ATDIAARGIDVPGVSLVVNYELPNVPEVYVHRIGRTARAGAEGTAVTFCAPDERSLLRDI 367
Query: 180 ERDVGCKFEFVSPP 193
E+ + + P
Sbjct: 368 EKMLKVAIPVENAP 381
>gi|383786573|ref|YP_005471142.1| DNA/RNA helicase [Fervidobacterium pennivorans DSM 9078]
gi|383109420|gb|AFG35023.1| DNA/RNA helicase, superfamily II [Fervidobacterium pennivorans DSM
9078]
Length = 548
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 136/245 (55%), Gaps = 5/245 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP + ++RK++ + +I V ++E E + K +L +I +
Sbjct: 194 LFSATMPKEIVSIARKFMKDYEHISTV--KEELTTENAEQLYFEIEEDDKLPLLCRIIDM 251
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ IVF QTK + DE++ L+ + ++ LHGD SQ QRER L+ F++ + +LV
Sbjct: 252 NPEFY-GIVFCQTKAEVDEIARKLSDLGYNADGLHGDYSQSQRERVLDKFKKKQLNILVT 310
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARG+DI + +I+Y +P DPE +VHR GRTGRAGK+G AI T S ++
Sbjct: 311 TDVAARGIDIEGLTHVINYSVPRDPEYYVHRIGRTGRAGKKGLAITFVTRSDYYHFTRVK 370
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAA 239
R K P+VED+L E VV T+ S E F AQ+LIEE G T+A+
Sbjct: 371 RFTKAKIAKDKIPMVEDILNRQLENVVNTIKKESYVSNELFRQVAQKLIEEMGPTEAVEM 430
Query: 240 ALAQL 244
L L
Sbjct: 431 LLHTL 435
>gi|154249323|ref|YP_001410148.1| DEAD/DEAH box helicase domain-containing protein [Fervidobacterium
nodosum Rt17-B1]
gi|154153259|gb|ABS60491.1| DEAD/DEAH box helicase domain protein [Fervidobacterium nodosum
Rt17-B1]
Length = 571
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 135/246 (54%), Gaps = 5/246 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
LFSATMP + ++RK++ +++ V +DE E + K +L +I
Sbjct: 197 FLFSATMPKEIVDIARKFMKEYIHVSTV--KDELTTENAEQLYFEVDEKDKLPLLCRIID 254
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ IVF QTK + DE+S L + ++ LHGD SQ+QRER L+ FR+ + +LV
Sbjct: 255 MNP-DFYGIVFCQTKLEVDEISKKLLDLGYNADGLHGDYSQYQRERVLDKFRKKQLRILV 313
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
TDVAARG+DI + +I+Y +P DPE +VHR GRTGRAGK+G AI T +
Sbjct: 314 TTDVAARGIDIDGLTHVINYSVPRDPEYYVHRIGRTGRAGKKGFAITFVTRDDYFHFARV 373
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALA 238
+R K S P VED+L E+++ TL S E + AQ++IEE G T+A+
Sbjct: 374 KRFAKAKIIKDSIPQVEDILNRQLEKLLDTLKNAPKVSNELYKRAAQQIIEEMGPTEAVE 433
Query: 239 AALAQL 244
L L
Sbjct: 434 MLLHTL 439
>gi|227487924|ref|ZP_03918240.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51867]
gi|227092130|gb|EEI27442.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51867]
Length = 718
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 132/205 (64%), Gaps = 4/205 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS++YLD+P + + + + I ++ +K L+ ++ V
Sbjct: 289 LFSATMPNAIRRLSQQYLDDPYEVTV--KAETRTNTNISQRYLNVAHRNKLDALTRILEV 346
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +E++ L + +++A++GDI+Q QRERT++ R G+ +LVA
Sbjct: 347 -TEFEAMIIFVRTKYETEELAEKLRARGFSAQAINGDIAQQQRERTVDQLRDGRLDILVA 405
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P+D E+++HR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 406 TDVAARGLDVDRISHVLNYDIPHDTESYIHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 465
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQ 205
R E + P V++V ES E+
Sbjct: 466 RVTNATLEEMQLPTVDEVNESRKEK 490
>gi|227542566|ref|ZP_03972615.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51866]
gi|227181764|gb|EEI62736.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51866]
Length = 718
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 132/205 (64%), Gaps = 4/205 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS++YLD+P + + + + I ++ +K L+ ++ V
Sbjct: 289 LFSATMPNAIRRLSQQYLDDPYEVTV--KAETRTNTNISQRYLNVAHRNKLDALTRILEV 346
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +E++ L + +++A++GDI+Q QRERT++ R G+ +LVA
Sbjct: 347 -TEFEAMIIFVRTKYETEELAEKLRARGFSAQAINGDIAQQQRERTVDQLRDGRLDILVA 405
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P+D E+++HR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 406 TDVAARGLDVDRISHVLNYDIPHDTESYIHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 465
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQ 205
R E + P V++V ES E+
Sbjct: 466 RVTNATLEEMQLPTVDEVNESRKEK 490
>gi|227832855|ref|YP_002834562.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
700975]
gi|262182657|ref|ZP_06042078.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
700975]
gi|227453871|gb|ACP32624.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
700975]
Length = 669
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 90/250 (36%), Positives = 144/250 (57%), Gaps = 8/250 (3%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS++YL+NP + + + + + I + T K + ++ V
Sbjct: 242 LFSATMPNSIRRLSKQYLNNPAEVTV--KSERRTNDNITQRFLLTPHRHKMDAFTRILEV 299
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
IVF +TK ++V+ +L + A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 300 IDYDA-IIVFCRTKHATEDVADSLKEAGYNAAAINGDIAQQQRERTVDQLKDGRLDILVA 358
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 359 TDVAARGLDVDRITHVVNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 418
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRL--IEEKGTDAL 237
R + E + P ++V E+ A++ + +FF + E D +
Sbjct: 419 RVTNARLEEMDLPTADEVNAKRKEKFFASIGASQQDKQFDFFRDMVREYSAAENVAMDDI 478
Query: 238 AAALA-QLSG 246
AAALA QL G
Sbjct: 479 AAALAVQLQG 488
>gi|227503818|ref|ZP_03933867.1| superfamily II helicase [Corynebacterium striatum ATCC 6940]
gi|227199642|gb|EEI79690.1| superfamily II helicase [Corynebacterium striatum ATCC 6940]
Length = 678
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS++YL++P + + + + + I + T K + ++ V
Sbjct: 233 LFSATMPNSIRRLSKQYLNDPAEVTV--KSERRTNDNITQRYLLTPHRQKMDAFTRILEV 290
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
IVF +TK + +EV+ +L + A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 291 IEYDA-IIVFCRTKHETEEVADSLRDAGYNAAAINGDIAQQQRERTVDQLKDGRLDILVA 349
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 350 TDVAARGLDVDRITHVVNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 409
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRL--IEEKGTDAL 237
R + E + P + V E E+ +A + + + EFF + D +
Sbjct: 410 RVTNARLEEMDLPSADAVNEKRKEKFLAKIGESLGDKQFEFFRDMVREYSAANNVAMDDI 469
Query: 238 AAALA-QLSG 246
AAALA QL G
Sbjct: 470 AAALAVQLQG 479
>gi|237785892|ref|YP_002906597.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
44385]
gi|237758804|gb|ACR18054.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
44385]
Length = 823
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 148/248 (59%), Gaps = 7/248 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS++YL++P + + Q + A+ I + K L+ ++ V
Sbjct: 333 LFSATMPASIRRLSKQYLEDPREVTIKSQQ--RTADNIHQQYLLVNHHYKLDALTRILEV 390
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK++ +E++ L + ++ A++GD++Q+QRERT++ R G+ +LVA
Sbjct: 391 -TEFDAMIMFARTKQNTEELAEKLRARGFSAAAINGDMAQNQRERTVDQLRDGRLDILVA 449
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P+D E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 450 TDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRLLRSIE 509
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDA--L 237
R E + P V++V E+ + ++ + V+ F EE T +
Sbjct: 510 RATKSSIEEMQLPTVDEVNETRKAKFAQSITESLADPQVDLFRGLINSYAEEHETPLADI 569
Query: 238 AAALAQLS 245
AAALA S
Sbjct: 570 AAALATQS 577
>gi|340374345|ref|XP_003385698.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Amphimedon queenslandica]
Length = 588
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 101/262 (38%), Positives = 153/262 (58%), Gaps = 15/262 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR--TILSDL 58
+LFSATMP VK++ R+Y+ + IDL + + +L IK + + TIL DL
Sbjct: 234 LLFSATMPPNVKEVIRQYMKQSVVIDLTASSN-RLPPAIKHKVLRLDRGMDKFGTIL-DL 291
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTV 117
I VY+ + IVFT TK A ++ L+ + +++ +LHGD+SQ RE L FR GK +
Sbjct: 292 INVYSPQ-RAIVFTTTKIQASDLGSFLSRNGVSATSLHGDLSQQMRETCLERFRSGKIKI 350
Query: 118 LVATDVAARGLDIPNVDLIIHYE-LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ--RR 174
+ ATDVAARG+DIP +D ++ E P+ +++VHRSGRTGR G GT+IL+ +SSQ +
Sbjct: 351 IAATDVAARGIDIPEIDFVLQIEPPPSGIDSYVHRSGRTGRKGLPGTSILLLSSSQDSQY 410
Query: 175 TVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQRLIEEKG 233
+R L+R V + E + P ++V+ S + V ++ E + P A+ LI E G
Sbjct: 411 FLRELKRVV--QVEEIKRPSRDEVITRSLDSAVKSIKAKKDEKLINAALPLAEELISEDG 468
Query: 234 TDALAAALAQLSG---FSRPPS 252
ALA+A+ + G + RP S
Sbjct: 469 AKALASAIISICGIRVYDRPES 490
>gi|399888651|ref|ZP_10774528.1| RNA helicase [Clostridium arbusti SL206]
Length = 523
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 142/249 (57%), Gaps = 12/249 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +KKL+ KYL + + + + +++ I Y ++ L ++
Sbjct: 181 LLFSATMPRPIKKLAEKYLKKDVKLIQILKKSMTVSK-IDQYFYEVHNNARLEALCRILD 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIAS-----EALHGDISQHQRERTLNGFRQGKF 115
+ I+F +TK++ DE L S + S E +HGD+ Q QR TL+ F+ GK
Sbjct: 240 T-EEPECAIIFCKTKKNVDE----LVSTMGSKGYNIEGMHGDMKQSQRLSTLSKFKHGKL 294
Query: 116 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT 175
T L ATDVAARG+D+ N+ +I+YELP D E++VHR GRTGRA K GTAI + T +
Sbjct: 295 TFLAATDVAARGIDVENITHVINYELPQDTESYVHRIGRTGRANKSGTAISLITKKEFSK 354
Query: 176 VRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGT 234
++ +ERD+ K + P V+D++ ++ +VA + N ++ + + F P + L +
Sbjct: 355 LKQIERDIKSKITKKAVPSVDDIINIKSKNIVAKITNILNDDEYKKFEPIIEDLSSQYSL 414
Query: 235 DALAAALAQ 243
+ +AAAL +
Sbjct: 415 NQIAAALLK 423
>gi|120600329|ref|YP_964903.1| DEAD/DEAH box helicase [Shewanella sp. W3-18-1]
gi|146291742|ref|YP_001182166.1| DEAD/DEAH box helicase [Shewanella putrefaciens CN-32]
gi|120560422|gb|ABM26349.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
gi|145563432|gb|ABP74367.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
CN-32]
Length = 640
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 144/256 (56%), Gaps = 14/256 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +K+++ ++L +P+++ + +Q E I+ + + +K L ++ V
Sbjct: 184 LFSATMPEQIKRVANQHLRSPVHVRIESSQ--TTVESIEQRFVQVSQHNKLEALVRVLEV 241
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +T+ E++ L + AS LHGD++Q RER ++ ++GK +L+A
Sbjct: 242 ENTEG-VIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIA 300
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P D E +VHR GRTGRAG+ G AIL TS + R +R++E
Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360
Query: 181 RDVGCKFEFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIE--EKGT 234
R + + P E V E EQ+ T+NG ++F +L + E T
Sbjct: 361 RSTNSRISPMKIPSPETVAERRLSRLGEQLAETING----DLDFMKEAVAQLCQQLEVDT 416
Query: 235 DALAAALAQLSGFSRP 250
D LAAAL Q RP
Sbjct: 417 DLLAAALLQQVQQERP 432
>gi|449268996|gb|EMC79808.1| Nucleolar RNA helicase 2, partial [Columba livia]
Length = 297
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 85/179 (47%), Positives = 116/179 (64%), Gaps = 2/179 (1%)
Query: 91 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 150
+++LHGDI Q QRE TL GFR G F VL+AT+VAARGLDIP VDL+I P D ++++H
Sbjct: 3 AQSLHGDIPQQQREVTLKGFRTGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIH 62
Query: 151 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 210
RSGRTGRAG+ G I +F + ++ +E G F+ V P DV+++S+ L
Sbjct: 63 RSGRTGRAGRTGVCICLFQRREEDLLKQVEHKAGITFKRVGVPSATDVIKASSNDAKKLL 122
Query: 211 NGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268
+ P +V++F +AQ LI+EKG ALAAALA +SG S RSL+N G+VT+ L
Sbjct: 123 EAIPPSAVDYFKKSAQELIDEKGAVAALAAALAHISGASY-IQQRSLLNSTAGFVTMVL 180
>gi|392417671|ref|YP_006454276.1| DNA/RNA helicase, superfamily II [Mycobacterium chubuense NBB4]
gi|390617447|gb|AFM18597.1| DNA/RNA helicase, superfamily II [Mycobacterium chubuense NBB4]
Length = 563
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 125/205 (60%), Gaps = 4/205 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++K++ KYL +P+ + + + AE I I + K L+ L+ V
Sbjct: 191 LFSATMPPGIRKITAKYLHDPVEVTV--KSKSQTAENITQRYIQVSHQRKMDALTRLLEV 248
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+G IVF +TK+ +EV+ L + A+ A++GDI Q RERT+N + G +LVA
Sbjct: 249 -EQGDAMIVFVRTKQATEEVAEKLKARGFAAAAINGDIPQAVRERTINQLKDGSIDILVA 307
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P+DPE++VHR GRTGRAG+ GTA+L T +R + S+E
Sbjct: 308 TDVAARGLDVERISHVVNYDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLNSIE 367
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQ 205
R K P VEDV E ++
Sbjct: 368 RVTRQKLVESELPSVEDVNERRVQK 392
>gi|138893877|ref|YP_001124330.1| DEAD/DEAH box helicase [Geobacillus thermodenitrificans NG80-2]
gi|134265390|gb|ABO65585.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Geobacillus
thermodenitrificans NG80-2]
Length = 467
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 142/255 (55%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++++P + + E I+ Y + K IL+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMNDPELVKV--KAKEMTVPNIQQYYLEVHEKKKFDILTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ A IVF +TKR DE++ AL A+E +HGD+SQ +R L F++G +LV
Sbjct: 237 IQAPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T + + +
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVV-ATLNGVHPESVEFFTPTAQRLIEEKGTDALA 238
ER K E + PP + + LE + LN E++ F+ A+ L+EE D++
Sbjct: 356 ERTTKRKMERMKPPTLNEALEGQQRIAIEKLLNVAEAENLSFYKRAAEELLEEH--DSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L +R P +
Sbjct: 414 IVAACLKMLTREPDT 428
>gi|386312353|ref|YP_006008518.1| DEAD/DEAH box helicase [Shewanella putrefaciens 200]
gi|319424978|gb|ADV53052.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
Length = 635
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 144/256 (56%), Gaps = 14/256 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +K+++ ++L +P+++ + +Q E I+ + + +K L ++ V
Sbjct: 184 LFSATMPEQIKRVANQHLRSPVHVRIESSQ--TTVESIEQRFVQVSQHNKLEALVRVLEV 241
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +T+ E++ L + AS LHGD++Q RER ++ ++GK +L+A
Sbjct: 242 ENTEG-VIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIA 300
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P D E +VHR GRTGRAG+ G AIL TS + R +R++E
Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360
Query: 181 RDVGCKFEFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIE--EKGT 234
R + + P E V E EQ+ T+NG ++F +L + E T
Sbjct: 361 RSTNSRISPMKIPSPETVAERRLSRLGEQLAETING----DLDFMKEAVAQLCQQLEVDT 416
Query: 235 DALAAALAQLSGFSRP 250
D LAAAL Q RP
Sbjct: 417 DLLAAALLQQVQQERP 432
>gi|304403873|ref|ZP_07385535.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304346851|gb|EFM12683.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 500
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 122/190 (64%), Gaps = 4/190 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+ ++KL +Y++ P ++++ ++ + I+ AI TT K L +LI
Sbjct: 182 MLFSATMPAQIRKLGAEYMNGPTDVNI--TPEKVTVDKIRQVAIETTDRRKEDTLVELIG 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y + +VF +TK A +++ AL I+S+ LHGD+SQ +RE+ + FRQ + VL+
Sbjct: 240 KY-QPYLAVVFCRTKVRAKKLNEALQERGISSDELHGDLSQAKREQVMKRFRQARLQVLI 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ V + +Y++P DPET+VHR GRTGRAG EG A+ + +S V ++
Sbjct: 299 ATDVAARGLDVEGVSHVFNYDVPQDPETYVHRIGRTGRAGNEGMAVTLVSSHDIGAVANI 358
Query: 180 ERDVGCKFEF 189
++ +G K E
Sbjct: 359 QKTLGVKIEL 368
>gi|405980982|ref|ZP_11039311.1| hypothetical protein HMPREF9240_00317 [Actinomyces neuii BVS029A5]
gi|404393001|gb|EJZ88058.1| hypothetical protein HMPREF9240_00317 [Actinomyces neuii BVS029A5]
Length = 576
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 140/234 (59%), Gaps = 5/234 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +KK+++ +L++P+ I + Q ++ + YA+ K L+ +++
Sbjct: 181 LFSATMPPAIKKVAQTHLNDPVEIS-IARQSTTVSTVHQTYAV-VPFKFKNVALARVLST 238
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G TIVF +T+ DA+EV+ +T+ + A+ GD++Q +RER + R G VLVA
Sbjct: 239 M-DSGATIVFVRTRLDAEEVANDMTARGFRTAAISGDVAQAERERIVERLRNGTLDVLVA 297
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ ++L++++++P E +VHR GRTGRAG+EGTA+ FT +R +R +E
Sbjct: 298 TDVAARGLDVERIELVVNFDVPRQDEAYVHRIGRTGRAGREGTALSFFTPRERGKLRQIE 357
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKG 233
+ G K E V P + V A Q++ L + + +E + + L EE+G
Sbjct: 358 KLTGTKMEAVRVPSPQQVRTHKAHQILDKLPERIASKGLELYFGLIEELAEEQG 411
>gi|196250549|ref|ZP_03149239.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
gi|196209898|gb|EDY04667.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
Length = 467
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 142/255 (55%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++++P + + E I+ Y + K IL+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMNDPELVKV--KAKEMTVPNIQQYYLEVHEKKKFDILTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ A IVF +TKR DE++ AL A+E +HGD+SQ +R L F++G +LV
Sbjct: 237 IQAPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T + + +
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVV-ATLNGVHPESVEFFTPTAQRLIEEKGTDALA 238
ER K E + PP + + LE + LN E++ F+ A+ L+EE D++
Sbjct: 356 ERTTKRKMERMKPPTLNEALEGQQRIAIEKLLNVAEAENLSFYKRAAEELLEEH--DSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L +R P +
Sbjct: 414 IVAACLKMLTREPDT 428
>gi|56461091|ref|YP_156372.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
gi|56180101|gb|AAV82823.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
Length = 594
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 135/232 (58%), Gaps = 5/232 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ ++KL++ +L +PLNI + EK IK A +K T L+ L+ V
Sbjct: 187 LFSATMPNAIRKLAKTFLKDPLNIQIEAIAREKAT--IKQKAWKVQGMTKMTALTRLLEV 244
Query: 62 YAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ ++F +T++D +V+ L + + L GD++Q QRE+T++ R G +LV
Sbjct: 245 TPYQ-RALIFVRTRQDTMDVAELLQRNGFKAAPLSGDLNQAQREQTVSQLRSGHIEILVG 303
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDV ARGLD+P + +I+Y+LP+D E++VHR GRTGRAG+ G AIL F + +R +R E
Sbjct: 304 TDVVARGLDVPEITHVINYDLPSDTESYVHRIGRTGRAGRTGEAILFFRAKERHLLRHYE 363
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEE 231
R EF P ++ + +Q++ L + PE+ P ++L+ E
Sbjct: 364 RLTNAPVEFFEVPNANELSKYRQQQLLEKLQASLAPETASADKPKLEKLLGE 415
>gi|307243618|ref|ZP_07525761.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
stomatis DSM 17678]
gi|306492987|gb|EFM64997.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
stomatis DSM 17678]
Length = 538
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 124/205 (60%), Gaps = 4/205 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP + +L++KY +P++I +V + IK Y I T ++K +L+ L+ V
Sbjct: 183 LFSATMPKAILELTKKYQKDPVHIKVV--RKTLTVSNIKQYYIETRKSNKLEVLTRLLDV 240
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
Y T+VFT TK+ ADE+ +L + +++LHGD+ Q QR+ ++ FR G +LVA
Sbjct: 241 Y-NPKLTVVFTNTKKGADELVSSLQARGYGADSLHGDLKQVQRDIVMDKFRAGTIDILVA 299
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARG+DI +V+ +I+YELP D E +VHR GRTGRAG+EG A + R ++ +E
Sbjct: 300 TDVAARGIDIDDVECVINYELPQDDEYYVHRIGRTGRAGREGIAFSFAFGREMRKLKDIE 359
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQ 205
R K P V DV E Q
Sbjct: 360 RYTKSKIVKHDIPSVNDVEEKKVSQ 384
>gi|289422689|ref|ZP_06424529.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
gi|289156868|gb|EFD05493.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
Length = 547
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 122/198 (61%), Gaps = 4/198 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP + +L++KY P++I +V + E IK + I T ++K +L+ LI V
Sbjct: 183 LFSATMPKAILELTQKYQKEPVHIKVV--RKELTVNNIKQFYIETRKSNKLEVLTRLIDV 240
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
Y T+VFT TK+ ADE+ L + +++LHGD+ Q QR+ ++ FR G +LVA
Sbjct: 241 Y-NPKLTVVFTNTKKGADELVSDLQARGYGADSLHGDLKQVQRDIVMDKFRHGTIDILVA 299
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARG+D+ +V+ +I+YELP D E +VHR GRTGRAG++G A + R ++ +E
Sbjct: 300 TDVAARGIDVDDVECVINYELPQDEEYYVHRIGRTGRAGRDGIAFSFVFGREMRKLKDIE 359
Query: 181 RDVGCKFEFVSPPVVEDV 198
R K S P V DV
Sbjct: 360 RYTKSKVMKHSIPTVNDV 377
>gi|403238270|ref|ZP_10916856.1| DEAD/DEAH box helicase domain-containing protein [Bacillus sp.
10403023]
Length = 496
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 156/272 (57%), Gaps = 13/272 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ NP + + E I+ Y + K +L+ L+
Sbjct: 179 LLFSATMPGPIQRIAERFMKNPKVVKV--KTKEMTVPNIQQYYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + I+F +TKR DE+S ALT A+E +HGD+SQ +R L F++G VLV
Sbjct: 237 IQSPE-LAIIFGRTKRRVDELSEALTLRGYAAEGIHGDLSQAKRISVLRKFKEGSIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGMAMTFVTPREIGQLKNV 355
Query: 180 ERDVGCKFEFVSPPVVEDVLES----SAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
E K + + PP +++ LE + E++V+ + ++ ++T A+ L+EE +
Sbjct: 356 ENTTKRKMDKMKPPTLDEALEGQQKITMEKIVSMIES---NNLSYYTRIAEELLEEHDSV 412
Query: 236 ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 267
++ AA +L ++ P S + E+ V ++
Sbjct: 413 SVVAAAIKL--MTKEPDSTPVKLTEEAPVRVK 442
>gi|269468408|gb|EEZ80073.1| hypothetical protein Sup05_1317 [uncultured SUP05 cluster
bacterium]
Length = 614
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 185/353 (52%), Gaps = 36/353 (10%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +K+++ K+L+NP + + + G K Y + + K L+ ++ V
Sbjct: 191 LFSATMPNIIKRVAEKFLNNPKIVKVKTKTETAPTIGQK-YCLVGGLSQKLDALTRILEV 249
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK E+S L++ ++EA++GDI Q QRE+ +N F++G +LVA
Sbjct: 250 -TEFDAMIIFARTKTLTIELSEKLSARGFSAEAINGDIQQSQREKIINKFKKGGIDILVA 308
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+P + +++Y++P D ET+VHR GRTGRAG+EG AIL + +RR + ++E
Sbjct: 309 TDVAARGLDVPRISHVVNYDIPQDAETYVHRIGRTGRAGREGEAILFVSHRERRMLNNIE 368
Query: 181 RDVGCKFEFVSPP----VVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
R K E + P + E +++ +++ T+N E Q EE
Sbjct: 369 RVTRQKIEPLELPTAKIINEKRIDTFKKRITETINNQDLSVFEKLVTEFQEANEEIAHLK 428
Query: 237 LAAALAQLS-------------GFSR----------PPSSRSLINHEQGWVTLQLTRDSA 273
+AAALA ++ F R P + SL +H + + ++ +
Sbjct: 429 VAAALAHIAQGNEPLLLSEKEPSFGRDQKPGEEKVVPVEANSLKDHPK--IPMRRYKLEV 486
Query: 274 FSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELL 326
+ + +++G +++ ++ IG I I + + DLP+E+ +E+L
Sbjct: 487 GNNNNIKPGNILGAIANEADMDSEYIGSIQIFDN----FSTVDLPDEMPEEVL 535
>gi|168180793|ref|ZP_02615457.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum NCTC 2916]
gi|226950212|ref|YP_002805303.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum A2 str. Kyoto]
gi|182668220|gb|EDT80199.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum NCTC 2916]
gi|226841562|gb|ACO84228.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A2 str. Kyoto]
Length = 524
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 161/317 (50%), Gaps = 26/317 (8%)
Query: 1 MLFSATMPSWVKKLSRKY----------LDNPLNIDLVGNQDEKLAEGIKLYAISTTATS 50
MLFSATMP +KKL+ Y L L +D + + KL A+
Sbjct: 183 MLFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAVKNKDKLEALC----- 237
Query: 51 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNG 109
R I S+ + I+F +TKR DE+ A+ S E +HGD+SQ+QR TL
Sbjct: 238 -RIIDSE------EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKK 290
Query: 110 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 169
F++ LVATDVAARG+D+ N+ +I+Y++P D E++VHR GRTGRA KEGTA + T
Sbjct: 291 FKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVT 350
Query: 170 SSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRL 228
+ ++R +ER K + P +ED+LE + ++ + + E F P + L
Sbjct: 351 PREVSSIRQIERITKSKIKKKELPTLEDILEKKYDNLLNDITSKIEENKYEKFMPMVKTL 410
Query: 229 IEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFL 288
+ ++AAL ++ FS+ S N + V ++L S + ++ +S++ F+
Sbjct: 411 EQNFDLSQVSAALMEML-FSKEMSFDYTNNKLEAEVPVRLFL-SVGRKDSINVKSLLTFI 468
Query: 289 SDVYPTAADEIGKIHII 305
D EIG I I+
Sbjct: 469 QDAASVKNHEIGDIDIL 485
>gi|168183134|ref|ZP_02617798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Bf]
gi|182673701|gb|EDT85662.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Bf]
Length = 524
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 162/317 (51%), Gaps = 26/317 (8%)
Query: 1 MLFSATMPSWVKKLSRKY----------LDNPLNIDLVGNQDEKLAEGIKLYAISTTATS 50
MLFSATMP +KKL+ Y L L +D + + KL A+
Sbjct: 183 MLFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAVKNKDKLEALC----- 237
Query: 51 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNG 109
R I S+ + I+F +TKR DE+ A+ S E +HGD+SQ+QR TL
Sbjct: 238 -RIIDSE------EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKK 290
Query: 110 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 169
F++ LVATDVAARG+D+ N+ +I+Y++P D E++VHR GRTGRA KEGTA + T
Sbjct: 291 FKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVT 350
Query: 170 SSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRL 228
+ ++R +ER K + P +ED+LE + ++ + + + E F P + L
Sbjct: 351 PREVSSIRQIERITKSKIKKKELPTLEDILEKKYDNLLNDIASKIEENKYEKFMPMVKTL 410
Query: 229 IEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFL 288
+ ++AAL ++ FS+ S N + V ++L S + ++ +S++ F+
Sbjct: 411 EQNFDLSQVSAALMEML-FSKEMSFDYTNNKLEAEVPVRLFL-SVGRKDSINVKSLLTFI 468
Query: 289 SDVYPTAADEIGKIHII 305
D EIG I I+
Sbjct: 469 QDAASVKNHEIGDIDIL 485
>gi|410028951|ref|ZP_11278787.1| DNA/RNA helicase [Marinilabilia sp. AK2]
Length = 570
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 127/209 (60%), Gaps = 5/209 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+ FSATMP + L++K+ DNP + ++ + E E I K ++S LI
Sbjct: 183 VFFSATMPKPIMDLTKKFQDNPEIVKVL--RKELTVENISQVYYEVKPALKLELMSRLIN 240
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + ++VF TKR DEV+ L + I +EALHGD+SQ QR + +N FR+G +VLV
Sbjct: 241 L-NQFQLSVVFCNTKRVTDEVTEELIARGITAEALHGDLSQAQRTKVMNKFRKGHVSVLV 299
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR-TVRS 178
ATDVAARG+D+ NV+ + +++LP D E +VHR GRTGRAGK GTAI T + ++
Sbjct: 300 ATDVAARGIDVDNVEAVFNFDLPLDEENYVHRIGRTGRAGKSGTAISFVTGRKDMFRIKD 359
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVV 207
LE+ + ++PP V D++E EQ++
Sbjct: 360 LEKFIKTSIAKMAPPSVADLIELKKEQLI 388
>gi|429728801|ref|ZP_19263505.1| putative DEAD-box ATP-dependent RNA helicase CshA
[Peptostreptococcus anaerobius VPI 4330]
gi|429147776|gb|EKX90798.1| putative DEAD-box ATP-dependent RNA helicase CshA
[Peptostreptococcus anaerobius VPI 4330]
Length = 547
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 122/198 (61%), Gaps = 4/198 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP + +L++KY P++I +V + E IK + I T ++K +L+ LI V
Sbjct: 183 LFSATMPKAILELTQKYQKEPVHIKVV--RKELTVNNIKQFYIETRKSNKLEVLTRLIDV 240
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
Y T+VFT TK+ ADE+ L + +++LHGD+ Q QR+ ++ FR G +LVA
Sbjct: 241 Y-NPKLTVVFTNTKKGADELVSDLQARGYGADSLHGDLKQVQRDIVMDKFRHGTIDILVA 299
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARG+D+ +V+ +I+YELP D E +VHR GRTGRAG++G A + R ++ +E
Sbjct: 300 TDVAARGIDVDDVECVINYELPQDEEYYVHRIGRTGRAGRDGIAFSFVFGREMRKLKDIE 359
Query: 181 RDVGCKFEFVSPPVVEDV 198
R K S P V DV
Sbjct: 360 RYTKSKVMKHSIPTVNDV 377
>gi|170760570|ref|YP_001788120.1| DEAD/DEAH box helicase [Clostridium botulinum A3 str. Loch Maree]
gi|169407559|gb|ACA55970.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A3 str. Loch Maree]
Length = 524
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 159/317 (50%), Gaps = 26/317 (8%)
Query: 1 MLFSATMPSWVKKLSRKY----------LDNPLNIDLVGNQDEKLAEGIKLYAISTTATS 50
MLFSATMP+ +KKL+ Y L L +D + + KL AI S
Sbjct: 183 MLFSATMPAAIKKLALNYMKEDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRIIDS 242
Query: 51 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNG 109
+ + I+F +TKR DE+ A+ S E +HGD+SQ+QR TL
Sbjct: 243 E------------EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKK 290
Query: 110 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 169
F++ LVATDVAARG+D+ N+ +I+Y++P D E++VHR GRTGRA KEGTA + T
Sbjct: 291 FKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVT 350
Query: 170 SSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRL 228
+ ++R +ER K P +ED+LE + ++ + + E F P + L
Sbjct: 351 PREVSSIRQIERITKSKITKKELPTLEDILEKKYDNLLNDITSKIEENKYEKFMPMVKTL 410
Query: 229 IEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFL 288
+ ++AAL ++ FS+ S N + V ++L S + ++ +S++ F+
Sbjct: 411 EQNFDLSQVSAALMEML-FSKEMSFDYTNNKLEAEVPVRLFL-SVGRKDSINVKSLLTFI 468
Query: 289 SDVYPTAADEIGKIHII 305
D EIG I I+
Sbjct: 469 QDEASVRNHEIGDIDIL 485
>gi|237796237|ref|YP_002863789.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum Ba4 str. 657]
gi|229263626|gb|ACQ54659.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Ba4 str. 657]
Length = 524
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/317 (32%), Positives = 160/317 (50%), Gaps = 26/317 (8%)
Query: 1 MLFSATMPSWVKKLSRKY----------LDNPLNIDLVGNQDEKLAEGIKLYAISTTATS 50
MLFSATMP +KKL+ Y L L +D + + KL A+ S
Sbjct: 183 MLFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAVKNKDKLEALCRIIDS 242
Query: 51 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNG 109
+ + I+F +TKR DE+ A+ S E +HGD+SQ+QR TL
Sbjct: 243 E------------EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKK 290
Query: 110 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 169
F++ LVATDVAARG+D+ N+ +I+Y++P D E++VHR GRTGRA KEGTA + T
Sbjct: 291 FKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVT 350
Query: 170 SSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRL 228
+ ++R +ER K + P +ED+LE + ++ + + + E F P + L
Sbjct: 351 PREVSSIRQIERITKSKIKKKELPTLEDILEKKYDNLLNDIASKIEENKYEKFMPMVKTL 410
Query: 229 IEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFL 288
+ ++AAL ++ FS+ S N + V ++L S + ++ +S++ F+
Sbjct: 411 EQNFDLSQVSAALMEML-FSKEMSFDYTNNKLEAEVPVRLFL-SVGRKDSINVKSLLTFI 468
Query: 289 SDVYPTAADEIGKIHII 305
D EIG I I+
Sbjct: 469 QDAASVKNHEIGDIDIL 485
>gi|311112058|ref|YP_003983280.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
gi|310943552|gb|ADP39846.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
Length = 695
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 146/251 (58%), Gaps = 13/251 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ ++K++++YL++P + + I+ + + K ++ ++ V
Sbjct: 289 LFSATMPNSIRKIAQQYLNDPTEVRV--KTKTTTGANIRQRYMQVMHSHKLDAMTRVLEV 346
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G IVF +TK++ +EV+ L + + A++GDI Q RERT++ R G+ +LVA
Sbjct: 347 ENYDG-IIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRIDILVA 405
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + L+++Y++P+D E++VHR GRTGRAG++G AIL T ++ +R +E
Sbjct: 406 TDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRDGEAILFVTPREKYMLRQIE 465
Query: 181 RDVGCKFEFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
+ K E + P +DV S AEQ+ T + E + FF + E T A
Sbjct: 466 KATRQKVEPMHMPTAQDVNSSRKQRFAEQITET---IETEDLNFFRKIIEDYENEHDTTA 522
Query: 237 --LAAALAQLS 245
+AAALA ++
Sbjct: 523 EDIAAALAVIA 533
>gi|127511465|ref|YP_001092662.1| DEAD/DEAH box helicase [Shewanella loihica PV-4]
gi|126636760|gb|ABO22403.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
Length = 599
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 143/256 (55%), Gaps = 13/256 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +K+++ KYL P++I + + E I+ + + +K L ++ V
Sbjct: 185 LFSATMPEQIKRVANKYLQTPVHISIAASH--TTVESIEQRFVQVSQHNKLEALVRVLEV 242
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +T+ E++ L + AS LHGD++Q RER ++ ++GK +L+A
Sbjct: 243 ENTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIA 301
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +I+Y++P D E +VHR GRTGRAG+ G AIL T + R +R++E
Sbjct: 302 TDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIE 361
Query: 181 RDVGCKFEFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIE--EKGT 234
R + ++ P E V E EQV T++ ES++F +L + E T
Sbjct: 362 RATKSRISPMNVPSPETVAERRLSRLGEQVSNTIDN---ESLDFMHGAVAQLCQQLEVDT 418
Query: 235 DALAAALAQLSGFSRP 250
+ LAAAL + RP
Sbjct: 419 EVLAAALLNMVQQERP 434
>gi|423473254|ref|ZP_17449996.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6O-2]
gi|402426406|gb|EJV58531.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6O-2]
Length = 535
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNENLSYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|423553834|ref|ZP_17530161.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus ISP3191]
gi|401182654|gb|EJQ89786.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus ISP3191]
Length = 528
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|148380762|ref|YP_001255303.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. ATCC 3502]
gi|153932415|ref|YP_001385046.1| DEAD/DEAH box helicase [Clostridium botulinum A str. ATCC 19397]
gi|153936759|ref|YP_001388516.1| DEAD/DEAH box helicase [Clostridium botulinum A str. Hall]
gi|148290246|emb|CAL84365.1| ATP-dependent RNA helicase (cold-shock dead-box protein)
[Clostridium botulinum A str. ATCC 3502]
gi|152928459|gb|ABS33959.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. ATCC 19397]
gi|152932673|gb|ABS38172.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. Hall]
Length = 524
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/340 (31%), Positives = 170/340 (50%), Gaps = 30/340 (8%)
Query: 1 MLFSATMPSWVKKLSRKY----------LDNPLNIDLVGNQDEKLAEGIKLYAISTTATS 50
MLFSATMP+ +KKL+ Y L L +D + + KL AI S
Sbjct: 183 MLFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRIIDS 242
Query: 51 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNG 109
+ + I+F +TKR DE+ A+ S E +HGD+SQ+QR TL
Sbjct: 243 E------------EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKK 290
Query: 110 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 169
F++ LVATDVAARG+D+ N+ +I+Y++P D E++VHR GRTGRA KEGTA + T
Sbjct: 291 FKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVT 350
Query: 170 SSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRL 228
+ ++R +ER + K P +ED+LE + ++ + + E F P + L
Sbjct: 351 PREVSSIRQIERIIKSKITKKELPTLEDILEKKYDNLLNDITSKIEENKYEKFMPMVKTL 410
Query: 229 IEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFL 288
+ ++AAL ++ FS+ S + + V ++L S + ++ +S++ F+
Sbjct: 411 EQNFDLSQVSAALMEML-FSKEMSFDYTNDKLEAEVPVRLFL-SVGRKDSINVKSLLTFI 468
Query: 289 SDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNK 328
D EIG I I+ + D+ A++++NK
Sbjct: 469 QDEASVKNHEIGDIDILD----KFTFMDVSSSTAEKIINK 504
>gi|404450977|ref|ZP_11015952.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
gi|403763394|gb|EJZ24353.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
Length = 578
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 130/211 (61%), Gaps = 9/211 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+ FSATMP + +L++KY DNP + ++ + E E I + K ++S L+
Sbjct: 183 VFFSATMPKPILELTKKYQDNPEIVRVL--RKELTVENITQNFFEVKPSLKMELMSRLMH 240
Query: 61 V--YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
+ YA ++VF TKR DEV+ L + I +EALHGD+SQ QR + +N FR+G +V
Sbjct: 241 LNQYAL---SVVFCNTKRVTDEVTEELVARGIMAEALHGDLSQAQRTKVMNKFRKGHVSV 297
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR-TV 176
LVATDVAARG+D+ NV+ + +++LP D E +VHR GRTGRAGK GTAI T + +
Sbjct: 298 LVATDVAARGIDVDNVEAVFNFDLPLDEENYVHRIGRTGRAGKSGTAINFVTGRKDMFRI 357
Query: 177 RSLERDVGCKFEFVSPPVVEDVLESSAEQVV 207
R +E+ + ++PP V D++E +Q+V
Sbjct: 358 RDIEKFIKTTISKMAPPSVSDLIELKKQQLV 388
>gi|424835106|ref|ZP_18259776.1| DEAD-box ATP dependent DNA helicase [Clostridium sporogenes PA
3679]
gi|365978233|gb|EHN14325.1| DEAD-box ATP dependent DNA helicase [Clostridium sporogenes PA
3679]
Length = 525
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 106/340 (31%), Positives = 170/340 (50%), Gaps = 30/340 (8%)
Query: 1 MLFSATMPSWVKKLSRKY----------LDNPLNIDLVGNQDEKLAEGIKLYAISTTATS 50
MLFSATMP+ +KKL+ Y L L +D + + KL AI S
Sbjct: 184 MLFSATMPTPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRIIDS 243
Query: 51 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNG 109
+ + I+F +TKR DE+ A+ S E +HGD+SQ+QR TL
Sbjct: 244 E------------EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKK 291
Query: 110 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 169
F++ LVATDVAARG+D+ N+ +I+Y++P D E++VHR GRTGRA KEGTA + T
Sbjct: 292 FKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVT 351
Query: 170 SSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRL 228
+ ++R +ER + K P +ED+LE + ++ + + E F P + L
Sbjct: 352 PREVSSIRQIERIIKSKITKKELPTLEDILEKKYDNLLNDITSKIEENKYEKFMPMVKTL 411
Query: 229 IEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFL 288
+ ++AAL ++ FS+ S + + V ++L S + ++ +S++ F+
Sbjct: 412 EQNFDLSEVSAALMEML-FSKEMSFDYTNDKLEAEVPVRLFL-SVGRKDSINVKSLLTFI 469
Query: 289 SDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNK 328
D EIG I I+ + D+ A++++NK
Sbjct: 470 QDEASVRNHEIGDIDILD----KFTFMDVSSNTAEKIINK 505
>gi|344343809|ref|ZP_08774676.1| DEAD/DEAH box helicase domain protein [Marichromatium purpuratum
984]
gi|343804793|gb|EGV22692.1| DEAD/DEAH box helicase domain protein [Marichromatium purpuratum
984]
Length = 625
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 145/252 (57%), Gaps = 6/252 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +++++ K L +P+ + + D + + I + T K +L+ ++ +
Sbjct: 187 LFSATMPRAIRQVAEKRLRDPMLVQVAA--DSETVDTIDQHHCVVTRFHKLDVLTRILEI 244
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G +VF +TK E++ L + A+EAL+GD++Q RERT++ +QG+ +LVA
Sbjct: 245 EEFDG-MVVFVRTKHGTTELADKLKAHGFAAEALNGDMNQEMRERTIDRLKQGQLDILVA 303
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + ++++++P DP +VHR GRTGRAG+ G A+L+ +R +R++E
Sbjct: 304 TDVAARGLDVERISHVVNFDIPTDPSAYVHRIGRTGRAGRAGRALLLVEPRERGLLRAIE 363
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA--LA 238
R + + PP D+ ES ++ A + + ++FF RL E + LA
Sbjct: 364 RTIRRSVPAMEPPSAADLSESRIDRFTAEIKEALGQDLDFFYRLLSRLNTELEVEMHDLA 423
Query: 239 AALAQLSGFSRP 250
AALA L+ RP
Sbjct: 424 AALAYLNQRERP 435
>gi|56963965|ref|YP_175696.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
gi|56910208|dbj|BAD64735.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
Length = 537
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 143/253 (56%), Gaps = 17/253 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK-----RTIL 55
+LFSATMP ++KLSRKY+++P + + N+ E A I +K R I
Sbjct: 178 LLFSATMPPAIRKLSRKYMNDPKTVTI--NKGEVTAPSINQVYYKVLERNKIDSLCRIID 235
Query: 56 SDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGK 114
SD + + I+F +TK+ E++ AL + + LHGD++Q QR+ + FR
Sbjct: 236 SDDVEL------GILFCRTKKGVAELTEALQARGYLVDGLHGDLTQSQRDVVMKKFRDSS 289
Query: 115 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 174
L+ATDVAARG+D+ NV +I+Y++P DPE++VHR GRTGRAG+ G AI + T + +
Sbjct: 290 IEFLIATDVAARGIDVENVTHVINYDIPQDPESYVHRIGRTGRAGRTGAAITLVTPREMK 349
Query: 175 TVRSLERDVGCKFEFVSPPVVEDVLE---SSAEQVVATLNGVHPESVEFFTPTAQRLIEE 231
+RS+E+++ S P +E+V+E SS + ++ + +E F P ++ E
Sbjct: 350 HLRSIEKEIKMHIPSASVPTIEEVVEKQQSSWKNLIQDTIEQGGKEMELFLPLVDEILAE 409
Query: 232 KGTDALAAALAQL 244
+ + AAL +L
Sbjct: 410 QDPKQVVAALLKL 422
>gi|108800931|ref|YP_641128.1| DEAD/DEAH box helicase [Mycobacterium sp. MCS]
gi|119870071|ref|YP_940023.1| DEAD/DEAH box helicase [Mycobacterium sp. KMS]
gi|126436556|ref|YP_001072247.1| DEAD/DEAH box helicase [Mycobacterium sp. JLS]
gi|108771350|gb|ABG10072.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. MCS]
gi|119696160|gb|ABL93233.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. KMS]
gi|126236356|gb|ABN99756.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. JLS]
Length = 557
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 145/249 (58%), Gaps = 15/249 (6%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +KK+++KYL +P+ + + + AE I I + K L+ L+
Sbjct: 191 LFSATMPPGIKKITKKYLHDPVEVTV--KSKTQTAENITQRYIQVSYPRKMDALTRLLET 248
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+G IVF +TK+ +EV+ L + A+ A++GDI Q RERT++ + G +LVA
Sbjct: 249 -EQGDGMIVFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVRERTISQLKDGSIDILVA 307
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + ++++++P+DPE++VHR GRTGRAG+ GTA+L T +R + S+E
Sbjct: 308 TDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLNSIE 367
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDA--- 236
R K + P VEDV E+ ++ ++ ++ F +RLIE+ D
Sbjct: 368 RVTRQKLVEIQLPSVEDVNAQRVEKFRDSIGEALNAPGIDLF----RRLIEDYERDNNVP 423
Query: 237 ---LAAALA 242
+AAALA
Sbjct: 424 LADIAAALA 432
>gi|67605637|ref|XP_666695.1| DEAD/DEAH box helicase [Cryptosporidium hominis TU502]
gi|54657739|gb|EAL36467.1| DEAD/DEAH box helicase [Cryptosporidium hominis]
Length = 678
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 130/215 (60%), Gaps = 9/215 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLD------NPLNIDLVGNQDEKLA--EGIKLYAISTTATSKR 52
+LFSAT+P WVK + + + + +I + G ++++ A I+ AI +
Sbjct: 211 LLFSATVPPWVKNILTEIMSSDTVTVDVTHISIHGEEEDEAAARSRIRHLAIQCAYPQRT 270
Query: 53 TILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFR 111
+L D+IT+YA GK I+FT+TK+ A+E+++ + LHGDI Q+QRE L F+
Sbjct: 271 GLLGDIITMYAGINGKCIIFTETKQTANEIAMRSEISKMCQVLHGDIQQNQREIALQAFK 330
Query: 112 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS 171
+G++ LVATDVAARGL I +V ++I P D +T++HRSGRTGRAGK GTAI+ S
Sbjct: 331 EGRYRCLVATDVAARGLHIDDVAVVIQLAPPRDIDTYIHRSGRTGRAGKFGTAIMFCNMS 390
Query: 172 QRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 206
+ S+E+ F+ + P E++L+ +A+ +
Sbjct: 391 DYPFLSSIEKASKISFQRIGVPQYEEILQKTADSI 425
>gi|66475994|ref|XP_627813.1| nucleolar protein GU2. eIF4A-1-family. RNA SFII helicase
[Cryptosporidium parvum Iowa II]
gi|46229325|gb|EAK90174.1| nucleolar protein GU2. eIF4A-1-family. RNA SFII helicase
[Cryptosporidium parvum Iowa II]
Length = 738
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 130/215 (60%), Gaps = 9/215 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLD------NPLNIDLVGNQDEKLA--EGIKLYAISTTATSKR 52
+LFSAT+P WVK + + + + +I + G ++++ A I+ AI +
Sbjct: 261 LLFSATVPPWVKNILTEIMSSDTVTVDVTHISIHGEEEDEAAARSRIRHLAIQCAYPQRT 320
Query: 53 TILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFR 111
+L D+IT+YA GK I+FT+TK+ A+E+++ + LHGDI Q+QRE L F+
Sbjct: 321 GLLGDIITMYAGINGKCIIFTETKQTANEIAMRSEISKMCQVLHGDIQQNQREIALQAFK 380
Query: 112 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS 171
+G++ LVATDVAARGL I +V ++I P D +T++HRSGRTGRAGK GTAI+ S
Sbjct: 381 EGRYRCLVATDVAARGLHIDDVAVVIQLAPPRDIDTYIHRSGRTGRAGKFGTAIMFCNMS 440
Query: 172 QRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 206
+ S+E+ F+ + P E++L+ +A+ +
Sbjct: 441 DYPFLSSIEKASKISFQRIGVPQYEEILQKTADSI 475
>gi|187778617|ref|ZP_02995090.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC
15579]
gi|387819068|ref|YP_005679415.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
gi|187772242|gb|EDU36044.1| DEAD/DEAH box helicase [Clostridium sporogenes ATCC 15579]
gi|322807112|emb|CBZ04686.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
Length = 524
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 106/340 (31%), Positives = 170/340 (50%), Gaps = 30/340 (8%)
Query: 1 MLFSATMPSWVKKLSRKY----------LDNPLNIDLVGNQDEKLAEGIKLYAISTTATS 50
MLFSATMP+ +KKL+ Y L L +D + + KL AI S
Sbjct: 183 MLFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRIIDS 242
Query: 51 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNG 109
+ + I+F +TKR DE+ A+ S E +HGD+SQ+QR TL
Sbjct: 243 E------------EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKK 290
Query: 110 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 169
F++ LVATDVAARG+D+ N+ +I+Y++P D E++VHR GRTGRA KEGTA + T
Sbjct: 291 FKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVT 350
Query: 170 SSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRL 228
+ ++R +ER + K P +ED+LE + ++ + + E F P + L
Sbjct: 351 PREVSSIRQIERIIKSKITKKELPTLEDILEKKYDNLLNDITSKIEENKYEKFMPMVKTL 410
Query: 229 IEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFL 288
+ ++AAL ++ FS+ S + + V ++L S + ++ +S++ F+
Sbjct: 411 EQNFDLSEVSAALMEML-FSKEMSFDYTNDKLEAEVPVRLFL-SVGRKDSINVKSLLTFI 468
Query: 289 SDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNK 328
D EIG I I+ + D+ A++++NK
Sbjct: 469 QDEASVRNHEIGDIDILD----KFTFMDVSSNTAEKIINK 504
>gi|32399063|emb|CAD98303.1| DEAD/DEAH box helicase, possible [Cryptosporidium parvum]
gi|323508801|dbj|BAJ77294.1| cgd6_4860 [Cryptosporidium parvum]
Length = 688
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 130/215 (60%), Gaps = 9/215 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLD------NPLNIDLVGNQDEKLA--EGIKLYAISTTATSKR 52
+LFSAT+P WVK + + + + +I + G ++++ A I+ AI +
Sbjct: 211 LLFSATVPPWVKNILTEIMSSDTVTVDVTHISIHGEEEDEAAARSRIRHLAIQCAYPQRT 270
Query: 53 TILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFR 111
+L D+IT+YA GK I+FT+TK+ A+E+++ + LHGDI Q+QRE L F+
Sbjct: 271 GLLGDIITMYAGINGKCIIFTETKQTANEIAMRSEISKMCQVLHGDIQQNQREIALQAFK 330
Query: 112 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS 171
+G++ LVATDVAARGL I +V ++I P D +T++HRSGRTGRAGK GTAI+ S
Sbjct: 331 EGRYRCLVATDVAARGLHIDDVAVVIQLAPPRDIDTYIHRSGRTGRAGKFGTAIMFCNMS 390
Query: 172 QRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 206
+ S+E+ F+ + P E++L+ +A+ +
Sbjct: 391 DYPFLSSIEKASKISFQRIGVPQYEEILQKTADSI 425
>gi|25027815|ref|NP_737869.1| cold shock DEAD-box protein A [Corynebacterium efficiens YS-314]
gi|259506205|ref|ZP_05749107.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
gi|23493098|dbj|BAC18069.1| putative cold shock DEAD-box protein A [Corynebacterium efficiens
YS-314]
gi|259166182|gb|EEW50736.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
Length = 736
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 128/200 (64%), Gaps = 4/200 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS++YL+NP I + + + A I +S +K L+ ++ V
Sbjct: 284 LFSATMPNGIRRLSKQYLNNPQEISV--KSETRTATNITQRFLSVAHRNKMDALTRILEV 341
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 342 -TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 400
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 401 TDVAARGLDVERISHVLNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 460
Query: 181 RDVGCKFEFVSPPVVEDVLE 200
R + P V++V E
Sbjct: 461 RATNAPLVEMELPTVDEVNE 480
>gi|42779348|ref|NP_976595.1| DEAD/DEAH box helicase [Bacillus cereus ATCC 10987]
gi|206977074|ref|ZP_03237974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
H3081.97]
gi|217957807|ref|YP_002336351.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus cereus
AH187]
gi|222094007|ref|YP_002528058.1| dead/deah box helicase [Bacillus cereus Q1]
gi|229137077|ref|ZP_04265701.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST26]
gi|229194624|ref|ZP_04321421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293]
gi|375282337|ref|YP_005102772.1| ATP-dependent RNA helicase [Bacillus cereus NC7401]
gi|384178162|ref|YP_005563924.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|402554174|ref|YP_006595445.1| DEAD/DEAH box helicase [Bacillus cereus FRI-35]
gi|423357187|ref|ZP_17334786.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus IS075]
gi|423376168|ref|ZP_17353482.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus AND1407]
gi|423572348|ref|ZP_17548555.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-A12]
gi|423577914|ref|ZP_17554033.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-D12]
gi|423607941|ref|ZP_17583834.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD102]
gi|81700027|sp|Q73EU1.1|CSHA_BACC1 RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|42735263|gb|AAS39203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
ATCC 10987]
gi|206744723|gb|EDZ56130.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
H3081.97]
gi|217064501|gb|ACJ78751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH187]
gi|221238056|gb|ACM10766.1| DEAD/DEAH box helicase [Bacillus cereus Q1]
gi|228588845|gb|EEK46866.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293]
gi|228646384|gb|EEL02594.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST26]
gi|324324246|gb|ADY19506.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|358350860|dbj|BAL16032.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
NC7401]
gi|401075815|gb|EJP84184.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus IS075]
gi|401089159|gb|EJP97331.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus AND1407]
gi|401197715|gb|EJR04643.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-A12]
gi|401203960|gb|EJR10791.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-D12]
gi|401239515|gb|EJR45942.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD102]
gi|401795384|gb|AFQ09243.1| DEAD/DEAH box helicase [Bacillus cereus FRI-35]
Length = 525
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 146/255 (57%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L N + E++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQNTIENENLAYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|423556774|ref|ZP_17533077.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MC67]
gi|401194089|gb|EJR01081.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MC67]
Length = 535
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 146/255 (57%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + +K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKNKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + I+F +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIIFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNENLSYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|153938870|ref|YP_001392080.1| DEAD/DEAH box helicase [Clostridium botulinum F str. Langeland]
gi|384463072|ref|YP_005675667.1| ATP-dependent RNA helicase [Clostridium botulinum F str. 230613]
gi|152934766|gb|ABS40264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum F str. Langeland]
gi|295320089|gb|ADG00467.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum F str. 230613]
Length = 524
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 161/317 (50%), Gaps = 26/317 (8%)
Query: 1 MLFSATMPSWVKKLSRKYLDN----------PLNIDLVGNQDEKLAEGIKLYAISTTATS 50
MLFSATMP+ +KKL+ Y+ L +D + + KL AI
Sbjct: 183 MLFSATMPAPIKKLALNYMKKDVEHIAIVKKSLTVDKIAQHYFAVKNKDKLEAIC----- 237
Query: 51 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNG 109
R I S+ + I+F +TKR DE+ A+ S E +HGD+SQ+QR TL
Sbjct: 238 -RIIDSE------EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKK 290
Query: 110 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 169
F++ LVATDVAARG+D+ N+ +I+Y++P D E++VHR GRTGRA KEGTA + T
Sbjct: 291 FKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVT 350
Query: 170 SSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRL 228
+ ++R +ER K P +ED+LE + ++ + + E F P + L
Sbjct: 351 PREVSSIRQIERITKSKITKKELPTLEDILEKKYDNLLNDITSKIEENKYEKFMPMVKTL 410
Query: 229 IEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFL 288
+ ++AAL ++ FS+ S N + V ++L S + ++ +S++ F+
Sbjct: 411 EQNFDLSEVSAALMEML-FSKEMSFDYTNNKLEAEVPVRLFL-SVGRKDSINVKSLLTFI 468
Query: 289 SDVYPTAADEIGKIHII 305
D EIG I I+
Sbjct: 469 QDSSSVKNHEIGDIDIL 485
>gi|170725001|ref|YP_001759027.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169810348|gb|ACA84932.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 605
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 142/256 (55%), Gaps = 13/256 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +K+++ KYLDNP+++ + E I+ + + +K L ++ V
Sbjct: 185 LFSATMPEQIKRVANKYLDNPVHVKIAATT--TTVETIEQRFVQVSQHNKLEALVRVLEV 242
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +T+ E++ L + AS LHGD++Q RER ++ ++GK +++A
Sbjct: 243 EKTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIIIA 301
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P D E +VHR GRTGRAG+ G AIL T + R +R++E
Sbjct: 302 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIE 361
Query: 181 RDVGCKFEFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIE--EKGT 234
R + + P E V E EQV ++ +S++F +L + E T
Sbjct: 362 RATKSRISPMDVPSPETVTERRLSRLGEQVAEIISK---DSLDFMKGAVAQLCQQLEVDT 418
Query: 235 DALAAALAQLSGFSRP 250
D LAAAL Q RP
Sbjct: 419 DILAAALLQQVQKERP 434
>gi|149194827|ref|ZP_01871921.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus
TB-2]
gi|149134986|gb|EDM23468.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus
TB-2]
Length = 460
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/232 (37%), Positives = 131/232 (56%), Gaps = 12/232 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K L++ L NP I + Q E IK Y ++ L LI
Sbjct: 173 LLFSATMPEPIKNLAKTILKNPEFITITRKQVTN--ENIKEYFYVIDEFERKDALIRLID 230
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y K+IVF +TK+D D+++ L+ ++ LHGD+ Q +RE + GF+ + +LV
Sbjct: 231 -YKNPTKSIVFCRTKKDVDDIAEFLSGAGFDAKGLHGDMDQRKREEVIRGFKSDRIEILV 289
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ NV + +Y LP DPE++VHR GRTGRAGKEG AI + T + R + +
Sbjct: 290 ATDVAARGLDVNNVSHVFNYHLPLDPESYVHRIGRTGRAGKEGMAISLVTPHEFRALNRI 349
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEE 231
++ K P + DV + ++++ L+ + P TP + +IEE
Sbjct: 350 QK--ISKIILKEIPTLADVKDKEIQKIIDKLSNIDP------TPKSIEIIEE 393
>gi|164687595|ref|ZP_02211623.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM
16795]
gi|164603369|gb|EDQ96834.1| DEAD/DEAH box helicase [Clostridium bartlettii DSM 16795]
Length = 541
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 140/250 (56%), Gaps = 11/250 (4%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
FSATMP + +L++ Y P I +V + E IK + I T +K +L LI V
Sbjct: 183 FFSATMPKEILELTKLYQHEPEIIKVV--RKELTVPNIKQFYIETRRANKLEVLCRLIDV 240
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
Y ++VF TKR +DE+ L + ++ALHGD+ Q QR+ ++ FRQG +LVA
Sbjct: 241 Y-NPKLSVVFCNTKRGSDELVSELQARGYFADALHGDLKQTQRDIVMDKFRQGTIDILVA 299
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARG+D+ +VD++ +Y+LP D E +VHR GRTGRAG+EG + + R +R +E
Sbjct: 300 TDVAARGIDVDDVDMVFNYDLPQDEEYYVHRIGRTGRAGREGVSFSFVYGKEMRKMRDIE 359
Query: 181 RDVGCKFEFVSPPVVEDVLESSA----EQVVATLNGVH-PESVEFFTPTAQRLIEEKGTD 235
R CK S P + DV E +QV T+N + + + + + +E T
Sbjct: 360 RYTKCKLVKHSIPTIADVEEKKVAAFFKQVKDTVNESNLAKQINWVEALCEE--QELSTL 417
Query: 236 ALAAALAQLS 245
+AAAL +L+
Sbjct: 418 EVAAALVKLA 427
>gi|423525845|ref|ZP_17502297.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA4-10]
gi|401165636|gb|EJQ72953.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA4-10]
Length = 533
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 146/255 (57%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + +K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKNKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + I+F +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIIFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGTIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNENLSYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|403381239|ref|ZP_10923296.1| DEAD/DEAH box helicase [Paenibacillus sp. JC66]
Length = 522
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/255 (38%), Positives = 147/255 (57%), Gaps = 12/255 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP ++KL++++L +P ++ ++ Q A I+ I K L LI
Sbjct: 179 MLFSATMPPNIQKLAQQFLRDPQHVSVIPKQVS--APLIQQAYIEVHEKQKFEALCRLID 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ A I+F +TKR DE+S AL ++E LHGD+SQ+QR+ + FR G VLV
Sbjct: 237 MEAPD-LAIIFGRTKRRVDELSEALQKRGYSAEGLHGDLSQNQRDNVMRKFRDGSIDVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ V +++++LP DPE++VHR GRTGRAGKEGTA T + + +
Sbjct: 296 ATDVAARGLDVSGVSHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWTFVTPREIDHLHFI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLES----SAEQVVATLNGVHPESVEFFTPTAQRLIEE-KGT 234
ER + P + + +E +AE+++ +N E + F A +L+E+
Sbjct: 356 ERVTRHRITRKPLPSLAEAIEGKQRVTAERLLEVINN---EGAQPFKGVAIQLLEQYDSV 412
Query: 235 DALAAALAQLSGFSR 249
+ LAAA+ L+G SR
Sbjct: 413 NLLAAAIKLLTGESR 427
>gi|390566282|ref|ZP_10246715.1| DEAD-box ATP-dependent RNA helicase cshA [Nitrolancetus hollandicus
Lb]
gi|390170465|emb|CCF86060.1| DEAD-box ATP-dependent RNA helicase cshA [Nitrolancetus hollandicus
Lb]
Length = 528
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 135/235 (57%), Gaps = 9/235 (3%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQ-DEKLAEGIKLYAISTTATSKRTILSDLIT 60
LFSAT+P+ + LSR+YL P+ I + + L E + + T + DL
Sbjct: 180 LFSATIPNRIVDLSRRYLQKPVRIAIEPERVTVPLTEQVYYQVVPRAKVEALTRILDL-- 237
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
I+F +TKR+ D+++ L S+ +EALHGD+SQ QR+R + FR G+ +L+
Sbjct: 238 --TAPSSAIIFCRTKREVDDLTQKLESLGYPAEALHGDLSQVQRDRVMGRFRSGQTELLI 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVA+RGLDI V +I+Y++P DPE++VHR GRTGRAG+ G AI + T + R +R++
Sbjct: 296 ATDVASRGLDIEQVSHVINYDIPLDPESYVHRIGRTGRAGRPGVAITLVTPRESRLLRAI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGT 234
ER G + E S P E++ E + +L V + E TP ++EE T
Sbjct: 356 ERATGGRIERRSVPTAEEIAARQRELLGESLATVIQQD-ELGTPMM--IVEELST 407
>gi|152974078|ref|YP_001373595.1| DEAD/DEAH box helicase [Bacillus cytotoxicus NVH 391-98]
gi|152022830|gb|ABS20600.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
391-98]
Length = 511
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 191 LLFSATMPEPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLD 248
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 249 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 307
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+L T + ++++
Sbjct: 308 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGLAMLFVTPREMGQLKNI 367
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GVHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + +++ ++ A+ ++EE D++A
Sbjct: 368 ERTTKRKMDRMKAPTLDEALEGQQRLIAEKLQSAIENDNLSYYKRIAEEMLEE--NDSVA 425
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 426 VVAAALKMMTKEPDT 440
>gi|381395882|ref|ZP_09921576.1| ATP-dependent RNA helicase DeaD [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379328447|dbj|GAB56709.1| ATP-dependent RNA helicase DeaD [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 584
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 149/253 (58%), Gaps = 7/253 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +KK+S+KYL+NP ++ + A I+ + K L+ ++ +
Sbjct: 186 LFSATMPDQIKKISQKYLNNPKHVKI--ESKVSTASTIRQRYVQVAGHHKLETLTRILEI 243
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G IVF +TK E++ L++ EAL+GDI+Q RERT+ +QGK +LVA
Sbjct: 244 EEFEG-VIVFVRTKTATLELAEKLSARGYDVEALNGDIAQAARERTVERLKQGKIDILVA 302
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ V +I+Y++P+D E++VHR GRTGRAG++G AIL + ++R + ++E
Sbjct: 303 TDVAARGLDVERVSHVINYDVPHDTESYVHRVGRTGRAGRKGDAILFISHREKRMLFAIE 362
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQV-VATLNGVHPESVEFFTPTAQRLIEEK--GTDAL 237
R + + P + ++ ES + + ++ + ES+E + P + +I E + +
Sbjct: 363 RATKQEITMMEIPSIGELNESRLGRFKKSVIDALAHESIESYMPVIEAIIRESEASPEMV 422
Query: 238 AAALAQLSGFSRP 250
AALA+++ + P
Sbjct: 423 MAALAKVAQGNEP 435
>gi|375140808|ref|YP_005001457.1| DNA/RNA helicase [Mycobacterium rhodesiae NBB3]
gi|359821429|gb|AEV74242.1| DNA/RNA helicase, superfamily II [Mycobacterium rhodesiae NBB3]
Length = 562
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 123/198 (62%), Gaps = 4/198 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +KK++ KYL P+ + + + AE I I + K L+ L+ V
Sbjct: 191 LFSATMPPAIKKITSKYLHGPVEVTV--KSKTQTAENITQRYIQVSYPRKMDALTRLLEV 248
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+G IVF +TK+ +EV+ L + ++ A++GDI Q RERT+N + G +LVA
Sbjct: 249 -EQGDAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQAVRERTINSLKDGSLDILVA 307
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + ++++++P+DPE++VHR GRTGRAG+ GTA+L T +R ++S+E
Sbjct: 308 TDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLKSIE 367
Query: 181 RDVGCKFEFVSPPVVEDV 198
R K + P V+DV
Sbjct: 368 RVTRQKLVEIELPSVDDV 385
>gi|423456146|ref|ZP_17432999.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5X1-1]
gi|401131812|gb|EJQ39461.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5X1-1]
Length = 520
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNENLSYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|119773652|ref|YP_926392.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
gi|119766152|gb|ABL98722.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
Length = 637
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 139/256 (54%), Gaps = 13/256 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +K+++ K+L NP+NI + + E I+ + + +K L ++ V
Sbjct: 185 LFSATMPEQIKRVANKHLRNPVNISIAASH--TTVESIEQRFVQVSQHNKLEALVRVLEV 242
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +T+ E++ L + A+ LHGD++Q RER ++ + GK +L+A
Sbjct: 243 ENTEG-IIIFVRTRNSCMELAEKLEARGYAASPLHGDMNQQARERAVDQLKSGKLDILIA 301
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P D E +VHR GRTGRAG+ G AIL TS + R +R++E
Sbjct: 302 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 361
Query: 181 RDVGCKFEFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIE--EKGT 234
R + + P E V E EQV L H ++F +L + E T
Sbjct: 362 RATNSRISPMKIPSPESVAERRLSRLGEQVADILANEH---LDFMKGAVAQLCQQLEVDT 418
Query: 235 DALAAALAQLSGFSRP 250
+ LAAAL RP
Sbjct: 419 EQLAAALLHQVQLERP 434
>gi|212638043|ref|YP_002314563.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
gi|212559523|gb|ACJ32578.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
Length = 471
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 149/250 (59%), Gaps = 13/250 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL-AEGIKLYAISTTATSKRTILSDLI 59
+LFSATMP +++++ ++++NP +LV + +++ I+ Y I K L+ L+
Sbjct: 182 LLFSATMPEPIRRIAERFMNNP---ELVRVKAKEMTVPNIEQYYIEIQEKKKFDTLTRLL 238
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ + IVF +TKR DE++ AL A+E +HGD+SQ +R L F++G +L
Sbjct: 239 DIQS-PELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIDIL 297
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G AI T + +
Sbjct: 298 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGMAITFVTPREIGQLHH 357
Query: 179 LERDVGCKFEFVSPPVVEDVLE----SSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGT 234
+E+ K E + PP +++ LE ++ E+++AT+ ++ F+ A+ L+EE +
Sbjct: 358 IEKTTKRKMERMKPPTLDEALEGQQRAAIEKLLATIEH---NNLAFYKRAAEELLEEHDS 414
Query: 235 DALAAALAQL 244
+L AA ++
Sbjct: 415 VSLVAACIKM 424
>gi|221633115|ref|YP_002522340.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
gi|221156880|gb|ACM06007.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
Length = 534
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 130/213 (61%), Gaps = 4/213 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSAT+P +++L+++YL P+ I + + + I A +K LS ++
Sbjct: 190 LFSATIPPRIRQLTQRYLRAPVTIAI--HPERVTVPSIAQTVYEVAAHAKLEALSRILD- 246
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
Y I+F +TK ADE++ L S+ A+EA+HGD+SQ R+R + FR G+ +L+A
Sbjct: 247 YEAPTSAIIFVRTKSGADELAHKLQSLGYAAEAIHGDLSQAMRDRAMQRFRAGQVDLLIA 306
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIP V +I++++P+DPE++VHR GRTGRAG GTAI + +R +R++E
Sbjct: 307 TDVAARGLDIPAVSHVINFDIPSDPESYVHRIGRTGRAGATGTAITLIEPRERWLLRTIE 366
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV 213
R +G + P E++ E + A+L+ V
Sbjct: 367 RAIGQRLIPKRIPTREEIARRQRELLGASLSEV 399
>gi|237755972|ref|ZP_04584559.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237691876|gb|EEP60897.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 405
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 123/193 (63%), Gaps = 5/193 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ-DEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSATMP + +L+ ++L+ N + + + DE E IK K L++++
Sbjct: 184 LLFSATMPKEILELAEEFLNE--NYETIKVKPDEVTVEKIKQIIYRVNPRDKFKKLTEVL 241
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ + K I+FTQTK +ADE++ L + A+HGD SQ +RE L+ FR GK +L
Sbjct: 242 S-QNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKIL 300
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLDI VDL+I+Y LP D E+++HR GRTGRAG+EGTAI + TSS+ + +++
Sbjct: 301 VATDVAARGLDIKGVDLVINYGLPRDAESYIHRIGRTGRAGREGTAISIMTSSEDKQLQN 360
Query: 179 LERDVGCKFEFVS 191
+++ E ++
Sbjct: 361 IQKKTKANIEVIN 373
>gi|167630436|ref|YP_001680935.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
gi|167593176|gb|ABZ84924.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
Length = 540
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 133/219 (60%), Gaps = 8/219 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++L+R+Y+ P + + ++D+ I+ + K L ++
Sbjct: 195 LLFSATMPGPIQQLARQYMKEPEFVTI--SRDKLTVPLIEQVYYECKESQKVDALCRILD 252
Query: 61 VYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + G +I+F +TKR DE+ AL T +E LHGD++Q QR+R + FR GK +L+
Sbjct: 253 M-EEIGSSIIFCRTKRGVDELVAALETRGYFAEGLHGDLTQAQRDRVMKKFRDGKAELLI 311
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ NV +I+Y++P DPE++VHR GRTGRAG++G AI + + R ++ +
Sbjct: 312 ATDVAARGLDVENVTHVINYDIPQDPESYVHRIGRTGRAGRKGIAITLINYREYRQLKLI 371
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAE----QVVATLNGVH 214
ER + + P + D++E E ++V L+G H
Sbjct: 372 ERVTKARIQRRDLPSMADIVERQKEAHKMKIVKLLDGGH 410
>gi|410458653|ref|ZP_11312411.1| DEAD/DEAH box helicase [Bacillus azotoformans LMG 9581]
gi|409931248|gb|EKN68234.1| DEAD/DEAH box helicase [Bacillus azotoformans LMG 9581]
Length = 501
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 142/249 (57%), Gaps = 11/249 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP ++K++ ++++P+ I + E I+ Y I K +L+ L+
Sbjct: 179 LLFSATMPEPIRKIAENFMNDPVQIKVKAK--EMTVPNIEQYYIEMQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL T A+E +HGD++Q +R L F+ G VLV
Sbjct: 237 MESPE-LAIVFGRTKRRVDELSEALNTRGYAAEGIHGDLTQAKRSSVLKKFKAGTIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGLAYTFVTPREIGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLES----SAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
ER E P ++D LE +AE+++ T+ E+ F+ A+ L++E +
Sbjct: 356 ERTTKRSMERKPVPSMDDALEGQKQITAEKILYTIQN---ENFSFYKHMAEELLDEHDSV 412
Query: 236 ALAAALAQL 244
+ AA +L
Sbjct: 413 TVVAAAIKL 421
>gi|145299438|ref|YP_001142279.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418357190|ref|ZP_12959892.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142852210|gb|ABO90531.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356689580|gb|EHI54116.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 613
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 133/239 (55%), Gaps = 11/239 (4%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++++++K+L P I +V A I+ T K ++ L+ V
Sbjct: 187 LFSATMPDQIRRVAQKHLKQPKEIKIVSKT--STAPTIRQRYWQVTGLHKLDAMTRLLEV 244
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+VF +TK A+E++ L + A EALHGDI Q RERT++ RQG+ +L+A
Sbjct: 245 EPYEA-VLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIA 303
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDV ARGLD+ + +++Y++P D E++VHR GRTGRAG++G AIL +RR +R++E
Sbjct: 304 TDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIE 363
Query: 181 RDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
E + P ED+ + E++ T+ G E +E + LIEE D
Sbjct: 364 HATRQAIEPMKMPSTEDINQHRMTKFKERIRETMMG---EELELYLNLVNELIEEDSAD 419
>gi|32475237|ref|NP_868231.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
gi|32445778|emb|CAD78509.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
Length = 931
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 145/253 (57%), Gaps = 7/253 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSAT+P ++K++ +YL++P I + A ++ A+ + K L+ ++ V
Sbjct: 483 LFSATLPKPIRKIADEYLNDPARITI--KSKTITAASVRQRALFVSPRDKIDALTRILEV 540
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G IVFT+TK V+ L+ ++ AL+GD+ Q RERT++ ++G+ VLVA
Sbjct: 541 EETDG-VIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVA 599
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+P + + +++LP+D E++VHR GRTGRAG+ G AI+ T++QRR +R +E
Sbjct: 600 TDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQLRFIE 659
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKG--TDAL 237
E + P V D+ E+ + + V + + + + EE G + +
Sbjct: 660 NTTKQPIEIIDIPTVADINEARVRRFKQRITDVSADQDLTVYKDMIAQYAEESGKPMEMI 719
Query: 238 AAALAQLSGFSRP 250
AAALA++S RP
Sbjct: 720 AAALAEMSQNGRP 732
>gi|433653854|ref|YP_007297562.1| DNA/RNA helicase, superfamily II [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433292043|gb|AGB17865.1| DNA/RNA helicase, superfamily II [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 514
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 159/314 (50%), Gaps = 27/314 (8%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
M+FSATMP +K L++KY+ + I +V + ++ + + L ++
Sbjct: 178 MMFSATMPDEIKSLAKKYMKSDAKFISIV--KKTMTVSTVQHFYYEVKNQERFESLCKIL 235
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
V + TI+F +TK++ DE++ + S E +HGD+SQ+QR TL F++G L
Sbjct: 236 DV-DEPSSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGILDFL 294
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARG+DI NV +I+Y LP D E++VHR GRTGRA + G A + TS + ++
Sbjct: 295 VATDVAARGIDIENVTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYPALKR 354
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDAL 237
+E+ CK + P V+D+LE +++A + + + F P A L EE +
Sbjct: 355 IEKATRCKIKRKELPTVDDILEVKYNKMIAEIKKTLEKNDYKRFVPLAMELDEEYNLVDV 414
Query: 238 AAALAQL-------SGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSD 290
AAAL + P R IN L R ++ R+++ L D
Sbjct: 415 AAALMDMYYGKELYYNDDEPKYVRLFIN---------LGRKDKLNK-----RTLLKLLMD 460
Query: 291 VYPTAADEIGKIHI 304
+ + ++IG I I
Sbjct: 461 IGDISKEDIGNIDI 474
>gi|227548399|ref|ZP_03978448.1| superfamily II helicase, partial [Corynebacterium lipophiloflavum
DSM 44291]
gi|227079443|gb|EEI17406.1| superfamily II helicase [Corynebacterium lipophiloflavum DSM 44291]
Length = 683
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 128/201 (63%), Gaps = 4/201 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ ++K+S++YL++P + + + + I + T +K ++ ++ V
Sbjct: 283 LFSATMPNGIRKISKQYLNDPAEVTV--KSETRTNTNITQRYLFTAHRNKLDAITRILEV 340
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ IVF +TK + +E++ L + ++ A++GDI+Q QRERT++ R G+ +LVA
Sbjct: 341 -TEFEAMIVFVRTKHETEELAEKLRARGFSAAAINGDIAQQQRERTVDQLRDGRLDILVA 399
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 400 TDVAARGLDVERISHVFNYDIPNDIESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 459
Query: 181 RDVGCKFEFVSPPVVEDVLES 201
R E + P V++V ES
Sbjct: 460 RVTNATIEEMELPTVDEVNES 480
>gi|375011356|ref|YP_004988344.1| DNA/RNA helicase [Owenweeksia hongkongensis DSM 17368]
gi|359347280|gb|AEV31699.1| DNA/RNA helicase, superfamily II [Owenweeksia hongkongensis DSM
17368]
Length = 610
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 120/198 (60%), Gaps = 4/198 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +K++ + Y+ NP + + NQ + I+ A+ K L L+
Sbjct: 208 LFSATMPAEIKRIVKNYMVNPAEVKV--NQGNIVNTNIEHQYAVLKASDKTEALRRLLD- 264
Query: 62 YAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ +VFT+TKRDA +V+ L S A+E LHGD+SQ QR+ + FR G +L+A
Sbjct: 265 FDPAMYGVVFTRTKRDAQKVAEDLVESGYAAEPLHGDLSQAQRDAVMRRFRAGTLQMLIA 324
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARG+D+ N+ ++H+ LP+DPE + HRSGRT RAGK+G ++ + T R V+ LE
Sbjct: 325 TDVAARGIDVDNLTHVVHFALPDDPEYYTHRSGRTARAGKKGVSLSLITKGDMRRVKYLE 384
Query: 181 RDVGCKFEFVSPPVVEDV 198
+G KFE P + ++
Sbjct: 385 SKLGIKFEKALIPEIAEI 402
>gi|296132950|ref|YP_003640197.1| DEAD/DEAH box helicase [Thermincola potens JR]
gi|296031528|gb|ADG82296.1| DEAD/DEAH box helicase domain protein [Thermincola potens JR]
Length = 529
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/250 (36%), Positives = 142/250 (56%), Gaps = 11/250 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI-KLYAISTTATSKRTILSDLI 59
+LFSATMP +++L+RKYL NP + + ++DE I ++Y ++T L L
Sbjct: 182 LLFSATMPHEIQQLARKYLKNPRLVAV--SKDELTVPSIEQVY----YEVREKTKLESLC 235
Query: 60 TVYAKGGKT--IVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFT 116
V T I+F +TKR DE+ +L T +E LHGD++Q QR + + F+ G+
Sbjct: 236 RVLETIDVTLAIIFCKTKRGVDELVASLETRGYQAEGLHGDLTQAQRNKVMRKFKNGQVD 295
Query: 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 176
LVATDVAARGLDI NV +I+Y++P DPE +VHR GRTGRAG+ G AI + R +
Sbjct: 296 YLVATDVAARGLDIENVSHVINYDIPQDPEVYVHRIGRTGRAGRSGKAITFIVPEEYRQL 355
Query: 177 RSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTD 235
R +E+ +G + + P + D+ E Q++ + N ++ ++ + Q L +
Sbjct: 356 RLIEKIIGARIARKNLPSIADIFERQKVQMIDKVANTINGGQLDIYRDIVQELAADYNLI 415
Query: 236 ALAAALAQLS 245
+A+A +L+
Sbjct: 416 DIASAALKLA 425
>gi|229028084|ref|ZP_04184235.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271]
gi|228733237|gb|EEL84068.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271]
Length = 527
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNENLSYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|51892785|ref|YP_075476.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
gi|51856474|dbj|BAD40632.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
Length = 526
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 142/253 (56%), Gaps = 6/253 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++L+ +Y+ +P+ I + Q I Y + K L+ ++
Sbjct: 183 LLFSATMPPEIRRLAGRYMRDPITISVTPQQ--LTVPQIDQYFCEVRPSFKTEALTRILD 240
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + I F +TK+ DE+ AL + +E +HGD++Q QR R ++ F++G +LV
Sbjct: 241 I-ENVERGICFCRTKKGVDELVEALQARGYQAEGIHGDMNQAQRNRVMSRFKEGYIELLV 299
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI +V + +Y++P DPE++VHR GRTGRAG+ GTAI + T + +R +
Sbjct: 300 ATDVAARGLDISDVTHVFNYDIPQDPESYVHRIGRTGRAGRTGTAITLVTPREFPQLRLI 359
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESV--EFFTPTAQRLIEEKGTDAL 237
ER + + + P + DV E EQ+ L + E EF L E +D +
Sbjct: 360 ERVIKARLQRRPVPTLSDVAEKQREQLKERLIKILEEDKLGEFRELAEDLLAEYDPSDLV 419
Query: 238 AAALAQLSGFSRP 250
AAAL +SG +P
Sbjct: 420 AAALKLVSGEGKP 432
>gi|421498106|ref|ZP_15945244.1| deaD [Aeromonas media WS]
gi|407182876|gb|EKE56795.1| deaD [Aeromonas media WS]
Length = 563
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 133/239 (55%), Gaps = 11/239 (4%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++++++K+L P I ++ A I+ T K ++ L+ V
Sbjct: 124 LFSATMPDQIRRVAQKHLKQPKEIKIITKT--STAPTIRQRYWQVTGLHKLDAMTRLLEV 181
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+VF +TK A+E++ L + A EALHGDI Q RERT++ RQG+ +L+A
Sbjct: 182 EPYEA-VLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIA 240
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDV ARGLD+ + +++Y++P D E++VHR GRTGRAG++G AIL +RR +R++E
Sbjct: 241 TDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIE 300
Query: 181 RDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
E + P ED+ + E++ T+ G E +E + LIEE D
Sbjct: 301 HATRQAIEPMKMPSTEDINQHRMTKFKERIRETMMG---EELEIYVNLVNELIEEDSAD 356
>gi|387927977|ref|ZP_10130655.1| DEAD/DEAH box helicase domain protein [Bacillus methanolicus PB1]
gi|387587563|gb|EIJ79885.1| DEAD/DEAH box helicase domain protein [Bacillus methanolicus PB1]
Length = 485
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 151/258 (58%), Gaps = 13/258 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +++++ K++ NP + + E I+ + + +K +L+ L+
Sbjct: 179 LLFSATMPAPIQRMAEKFMKNPQIVRV--QSKEMTVPQIEQFYLEVQEKNKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL +E +HGD+SQ +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYMAEGIHGDLSQAKRLSVLRKFKEGSIDVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ ++ +
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGMAMTFVTPREKAYLKIV 355
Query: 180 ERDVGCKFEFVSPPVVEDVLE----SSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
E+ + + + + PP +++ LE ++ E+++ T+ +++ + A+ L+E++ D
Sbjct: 356 EKTIKRRMDKMKPPTLDEALEGQQKATIEKIIQTIES---NNLQLYKQAAEDLLEQQ--D 410
Query: 236 ALAAALAQLSGFSRPPSS 253
A+ A L ++ P +
Sbjct: 411 AVMVVSAALKMMTKEPDT 428
>gi|421610904|ref|ZP_16052069.1| cold-shock deAd box protein a [Rhodopirellula baltica SH28]
gi|408498358|gb|EKK02852.1| cold-shock deAd box protein a [Rhodopirellula baltica SH28]
Length = 931
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 145/253 (57%), Gaps = 7/253 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSAT+P ++K++ +YL++P I + A ++ A+ + K L+ ++ V
Sbjct: 483 LFSATLPKPIRKIADEYLNDPARITI--KSKTITAASVRQRALFVSPRDKIDALTRILEV 540
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G IVFT+TK V+ L+ ++ AL+GD+ Q RERT++ ++G+ VLVA
Sbjct: 541 EETDG-VIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVA 599
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+P + + +++LP+D E++VHR GRTGRAG+ G AI+ T++QRR +R +E
Sbjct: 600 TDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQLRFIE 659
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKG--TDAL 237
E + P V D+ E+ + + V + + + + EE G + +
Sbjct: 660 NTTKQPIEIIDIPTVADINEARVRRFKQRITDVSADQDLTVYKDMIAQYAEESGKPMEMI 719
Query: 238 AAALAQLSGFSRP 250
AAALA++S RP
Sbjct: 720 AAALAEMSQNGRP 732
>gi|313219322|emb|CBY16445.1| unnamed protein product [Oikopleura dioica]
Length = 557
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 152/270 (56%), Gaps = 14/270 (5%)
Query: 66 GKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 125
G+ ++F TKRD +++L+ +I ++ +HGDI Q RE+TL FR GK VLV TDVAA
Sbjct: 284 GRAMIFASTKRDTSDLALS-DNISDAQMIHGDIEQATREQTLQAFRDGKMRVLVCTDVAA 342
Query: 126 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 185
RGLD+P VDL+I E P+D ++++HRSGRTGRAG+ G I ++ Q ++ +E G
Sbjct: 343 RGLDVPEVDLVIQTEPPSDIDSYIHRSGRTGRAGRSGVCICLYKPKQAYQLKQVENVAGF 402
Query: 186 KFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA-------LA 238
KFE P ++ E++A+ V + + +S F A+ +I E + LA
Sbjct: 403 KFEHRGPVSAVELEEAAAKDVKRQIAKLPEKSSARFLEIAREMIAEAEEEEESSTEKLLA 462
Query: 239 AALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE 298
+A+A +SG + +SRSLI+ ++G+ T Q++ + ++ + + +S+ A E
Sbjct: 463 SAIAIMSGVT-DSTSRSLISGKKGFQTWQMSVSFEMNNQYLIFKLLEKGISE---KARVE 518
Query: 299 IGKIHIIADDRVQGAVFDLPEEIAKELLNK 328
+ + D GA FDLP + E+ K
Sbjct: 519 ARNVRVFMDR--MGAAFDLPTTMTNEVSEK 546
>gi|440713990|ref|ZP_20894578.1| cold-shock DEAD box protein A [Rhodopirellula baltica SWK14]
gi|436441186|gb|ELP34452.1| cold-shock DEAD box protein A [Rhodopirellula baltica SWK14]
Length = 895
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 145/253 (57%), Gaps = 7/253 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSAT+P ++K++ +YL++P I + A ++ A+ + K L+ ++ V
Sbjct: 447 LFSATLPKPIRKIADEYLNDPARITI--KSKTITAASVRQRALFVSPRDKIDALTRILEV 504
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G IVFT+TK V+ L+ ++ AL+GD+ Q RERT++ ++G+ VLVA
Sbjct: 505 EETDG-VIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVA 563
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+P + + +++LP+D E++VHR GRTGRAG+ G AI+ T++QRR +R +E
Sbjct: 564 TDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQLRFIE 623
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKG--TDAL 237
E + P V D+ E+ + + V + + + + EE G + +
Sbjct: 624 NTTKQPIEIIDIPTVADINEARVRRFKQRITDVSADQDLTVYKDMIAQYAEESGKPMEMI 683
Query: 238 AAALAQLSGFSRP 250
AAALA++S RP
Sbjct: 684 AAALAEMSQNGRP 696
>gi|415886177|ref|ZP_11548000.1| DEAD/DEAH box helicase domain protein [Bacillus methanolicus MGA3]
gi|387588830|gb|EIJ81151.1| DEAD/DEAH box helicase domain protein [Bacillus methanolicus MGA3]
Length = 485
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 147/255 (57%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +++++ K++ NP + + E I+ + + +K +L+ L+
Sbjct: 179 LLFSATMPAPIQRMAEKFMKNPQIVRV--QSKEMTVPQIEQFYLEVHEKNKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL +E +HGD+SQ +R L F++G VLV
Sbjct: 237 IQS-PELAIVFGRTKRRVDELSEALNLRGYMAEGIHGDLSQAKRLSVLRKFKEGLIDVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ ++ +
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGMAMTFVTPREKAYLKIV 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVV-ATLNGVHPESVEFFTPTAQRLIEEKGTDALA 238
E+ + + + + PP +++ LE + + + + +++F+ A+ L+E+ DA+
Sbjct: 356 EKTIKRRMDKMKPPTLDEALEGQQKATIDKIIQTIETNNLQFYKQAAEELLEQH--DAVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVSAVLKMLTKEPDT 428
>gi|431798400|ref|YP_007225304.1| DNA/RNA helicase [Echinicola vietnamensis DSM 17526]
gi|430789165|gb|AGA79294.1| DNA/RNA helicase, superfamily II [Echinicola vietnamensis DSM
17526]
Length = 567
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 142/253 (56%), Gaps = 14/253 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL-AEGIKLYAISTTATSKRTILSDLI 59
+ FSATM + L+RKY NP ++V Q ++L E I K +++ LI
Sbjct: 183 IFFSATMAKPIMDLTRKYQTNP---EIVKIQRKELTVENISQVYYEVKPPLKMELITRLI 239
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
++ + +VF TKR DEV+ L + I +EALHGD+SQ QR++ +N FR+G TVL
Sbjct: 240 NIH-QFNLGVVFCNTKRATDEVTEGLIARGIMAEALHGDLSQAQRDKVMNKFRKGHCTVL 298
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV-- 176
VATDVAARG+D+ NV+++ +Y+LP D E +VHR GRTGRAG+ G AI T R+ +
Sbjct: 299 VATDVAARGIDVDNVEVVFNYDLPLDEEYYVHRIGRTGRAGRSGMAISFITG--RKDIFR 356
Query: 177 -RSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN---GVHPESVEFFTPTAQRLIEEK 232
+ LER + ++PP V ++++ +Q+V + ++ F Q L E
Sbjct: 357 LKDLERYIKTTLTKMNPPSVAEMIDQKKDQLVKEVTTSLSKEEDNQVFEAALGQMLAEGL 416
Query: 233 GTDALAAALAQLS 245
D +A L +L
Sbjct: 417 SMDQIALGLVKLQ 429
>gi|421641007|ref|ZP_16081575.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus anthracis str.
BF1]
gi|403391874|gb|EJY89142.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus anthracis str.
BF1]
Length = 492
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 143 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 200
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 201 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 259
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 260 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 319
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 320 ERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVT 377
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 378 VVAAALKMMTKEPDT 392
>gi|373859820|ref|ZP_09602543.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
gi|372450463|gb|EHP23951.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
Length = 487
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 140/246 (56%), Gaps = 5/246 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ K++ P + + E ++ + + +K +L+ L+
Sbjct: 179 LLFSATMPMPIQRMAEKFMKEPQVVRV--KTKEMTVSSVEQFYVEVQERNKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL +E +HGD+SQ +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELAEALNLRGYMAEGIHGDLSQAKRLSVLKKFKEGSIDVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ + +
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVALTFVTHREKSYLSVV 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVV-ATLNGVHPESVEFFTPTAQRLIEEKGTDALA 238
ER K E + PP V+ LE + VV L + +++++ A L++++ +
Sbjct: 356 ERTTKRKMEKMVPPTVDQALEGQQKAVVEKILQTIEANNLQYYKEAADELLDQQDPSTVV 415
Query: 239 AALAQL 244
AA+ ++
Sbjct: 416 AAMLKM 421
>gi|167622568|ref|YP_001672862.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167352590|gb|ABZ75203.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 625
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 139/252 (55%), Gaps = 6/252 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +K+++ KYLDNP+++ + E I+ + + +K L ++ V
Sbjct: 185 LFSATMPEQIKRVANKYLDNPVHVKIAATTST--VETIEQRFVQVSQHNKLEALVRVLEV 242
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +T+ E++ L + AS LHGD++Q RER ++ ++G+ +++A
Sbjct: 243 EKTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAIDQLKRGQLDIIIA 301
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P D E +VHR GRTGRAG+ G AIL T + R +R++E
Sbjct: 302 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIE 361
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIE--EKGTDALA 238
R + + P E V E ++ + + + +EF L + E TD LA
Sbjct: 362 RATNSRIAPMDVPSPETVTERRLSRLGEQVAEIISQDLEFMKGAVATLCQQLEVDTDILA 421
Query: 239 AALAQLSGFSRP 250
AAL + RP
Sbjct: 422 AALLKQVQKDRP 433
>gi|229083524|ref|ZP_04215862.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44]
gi|228699778|gb|EEL52425.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44]
Length = 527
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 146/255 (57%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + ++ P +++ LE + L + +++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKMDRMNAPTLDEALEGQQRLIAEKLQSTIESDNLSYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|449135622|ref|ZP_21771069.1| cold-shock deAd-box protein a [Rhodopirellula europaea 6C]
gi|448885676|gb|EMB16100.1| cold-shock deAd-box protein a [Rhodopirellula europaea 6C]
Length = 851
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 145/253 (57%), Gaps = 7/253 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSAT+P ++K++ +YL++P I + A ++ A+ + K L+ ++ V
Sbjct: 404 LFSATLPKPIRKIADEYLNDPARITI--KSKTITAASVRQRALFVSPRDKIDALTRILEV 461
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G IVFT+TK V+ L+ ++ AL+GD+ Q RERT++ ++G+ VLVA
Sbjct: 462 EETDG-VIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVA 520
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+P + + +++LP+D E++VHR GRTGRAG+ G AI+ T++QRR +R +E
Sbjct: 521 TDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQLRFIE 580
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKG--TDAL 237
E + P V D+ E+ + + V + + + + EE G + +
Sbjct: 581 NTTKQPIEIIDIPTVADINEARVRRFKQRITDVSADQDLTIYKDMIAQYAEESGKPMEMI 640
Query: 238 AAALAQLSGFSRP 250
AAALA++S RP
Sbjct: 641 AAALAEMSQNGRP 653
>gi|254756954|ref|ZP_05208982.1| DEAD/DEAH box helicase [Bacillus anthracis str. Australia 94]
Length = 516
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|269125451|ref|YP_003298821.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora
curvata DSM 43183]
gi|268310409|gb|ACY96783.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM
43183]
Length = 565
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/169 (46%), Positives = 106/169 (62%), Gaps = 2/169 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP + LSR+YL+ P N+ + + + + + T K +L+ L+
Sbjct: 203 MLFSATMPGEIVALSRRYLNRPTNVRAEVHTESEATPQVTQHVFQTHPMDKPEVLARLLQ 262
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+G T+VF QTKR D ++ LT A+ A+HGD+ Q QRER L FR GK VLV
Sbjct: 263 ANGRG-LTMVFCQTKRACDRIAADLTRRGFAAAAVHGDLGQGQRERALRAFRSGKVDVLV 321
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 168
ATDVAARGLD+ +V +I+YE P+ ET VHR GRTGRAG+EGTA+ +
Sbjct: 322 ATDVAARGLDVEDVTHVINYECPDSAETHVHRIGRTGRAGREGTAVTLV 370
>gi|393720957|ref|ZP_10340884.1| DEAD/DEAH box helicase [Sphingomonas echinoides ATCC 14820]
Length = 570
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 106/342 (30%), Positives = 174/342 (50%), Gaps = 29/342 (8%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP + L+++Y + L I VG +++ I A++ + +L+
Sbjct: 183 LLFSATMPKSIVALAKRYQKDALRISTVG--EDRGHGDISYQAVTVAPADIENAVVNLLR 240
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
++ + I+F T+ + + L A+ AL G+ SQ++R + R + V V
Sbjct: 241 LH-EAETAILFCATRDNVRHLHAGLIERGFAAVALSGEHSQNERNSAMQALRDKRARVCV 299
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+P++ L+IH ELP D ET HRSGRTGRAGK+GTAIL+ ++R V +
Sbjct: 300 ATDVAARGLDLPSLSLVIHVELPRDAETLQHRSGRTGRAGKKGTAILIVPYQRKRRVEMM 359
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFF---TPTAQRLIEEKGTDA 236
R E+ + P V+D+ ++ E+++A L E VE A +L+E+K +
Sbjct: 360 LRGARIAVEWKNAPTVDDIRKADRERLLAMLM----EPVEIEDDDRELAAKLLEQKSPEE 415
Query: 237 LAAALAQ------------LSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSV 284
+AAAL Q LS S P+ + +H +G+ ++ R R R +
Sbjct: 416 IAAALVQSLRSKMPAPEEMLSQSSEKPAGKE--HHREGFDDVKWFRMDIGRRQNADPRWI 473
Query: 285 MGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELL 326
+ + +E+G I I A++ +F +P IA + +
Sbjct: 474 LPLICRRGHITKNEVGAIRIAANE----TMFQVPSAIAAKFM 511
>gi|30260423|ref|NP_842800.1| DEAD/DEAH box helicase [Bacillus anthracis str. Ames]
gi|47525504|ref|YP_016853.1| DEAD/DEAH box helicase [Bacillus anthracis str. 'Ames Ancestor']
gi|47567484|ref|ZP_00238196.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
G9241]
gi|49183266|ref|YP_026518.1| DEAD/DEAH box helicase [Bacillus anthracis str. Sterne]
gi|49479130|ref|YP_034574.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|65317675|ref|ZP_00390634.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
str. A2012]
gi|118475995|ref|YP_893146.1| DEAD/DEAH box helicase [Bacillus thuringiensis str. Al Hakam]
gi|165871548|ref|ZP_02216194.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0488]
gi|167634144|ref|ZP_02392466.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0442]
gi|167640350|ref|ZP_02398615.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0193]
gi|170687759|ref|ZP_02878974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0465]
gi|170707898|ref|ZP_02898348.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0389]
gi|177653423|ref|ZP_02935633.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0174]
gi|190567376|ref|ZP_03020290.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Tsiankovskii-I]
gi|196035956|ref|ZP_03103357.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
W]
gi|196041156|ref|ZP_03108452.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
NVH0597-99]
gi|196046212|ref|ZP_03113439.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB108]
gi|218901440|ref|YP_002449274.1| ATP-dependent RNA helicase [Bacillus cereus AH820]
gi|225862289|ref|YP_002747667.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB102]
gi|227812915|ref|YP_002812924.1| ATP-dependent RNA helicase [Bacillus anthracis str. CDC 684]
gi|228912978|ref|ZP_04076622.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228925493|ref|ZP_04088587.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228931740|ref|ZP_04094641.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228983493|ref|ZP_04143703.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229089370|ref|ZP_04220646.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42]
gi|229119903|ref|ZP_04249162.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201]
gi|229154007|ref|ZP_04282136.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
4342]
gi|229182634|ref|ZP_04309880.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1]
gi|229604746|ref|YP_002864874.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0248]
gi|254686589|ref|ZP_05150448.1| DEAD/DEAH box helicase [Bacillus anthracis str. CNEVA-9066]
gi|254723571|ref|ZP_05185358.1| DEAD/DEAH box helicase [Bacillus anthracis str. A1055]
gi|254734933|ref|ZP_05192645.1| DEAD/DEAH box helicase [Bacillus anthracis str. Western North
America USA6153]
gi|254739718|ref|ZP_05197411.1| DEAD/DEAH box helicase [Bacillus anthracis str. Kruger B]
gi|254754911|ref|ZP_05206946.1| DEAD/DEAH box helicase [Bacillus anthracis str. Vollum]
gi|301051970|ref|YP_003790181.1| DEAD/DEAH box helicase [Bacillus cereus biovar anthracis str. CI]
gi|376264267|ref|YP_005116979.1| cold-shock DEAD-box protein A [Bacillus cereus F837/76]
gi|386734107|ref|YP_006207288.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus anthracis str.
H9401]
gi|81696998|sp|Q6HPE6.1|CSHA_BACHK RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|81715465|sp|Q81VG0.1|CSHA_BACAN RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|134039177|sp|A0R8U6.1|CSHA_BACAH RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|30253744|gb|AAP24286.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Ames]
gi|47500652|gb|AAT29328.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. 'Ames Ancestor']
gi|47555886|gb|EAL14225.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
G9241]
gi|49177193|gb|AAT52569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Sterne]
gi|49330686|gb|AAT61332.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|118415220|gb|ABK83639.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
thuringiensis str. Al Hakam]
gi|164712652|gb|EDR18183.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0488]
gi|167511752|gb|EDR87133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0193]
gi|167530458|gb|EDR93173.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0442]
gi|170127256|gb|EDS96133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0389]
gi|170668286|gb|EDT19034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0465]
gi|172081463|gb|EDT66536.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0174]
gi|190561503|gb|EDV15474.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Tsiankovskii-I]
gi|195991325|gb|EDX55292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
W]
gi|196022957|gb|EDX61637.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB108]
gi|196028091|gb|EDX66702.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
NVH0597-99]
gi|218539043|gb|ACK91441.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH820]
gi|225790192|gb|ACO30409.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB102]
gi|227005398|gb|ACP15141.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. CDC 684]
gi|228600842|gb|EEK58416.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1]
gi|228629528|gb|EEK86226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
4342]
gi|228663560|gb|EEL19141.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201]
gi|228693970|gb|EEL47657.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42]
gi|228776237|gb|EEM24593.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228827920|gb|EEM73653.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228834238|gb|EEM79781.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228846673|gb|EEM91681.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|229269154|gb|ACQ50791.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0248]
gi|300374139|gb|ADK03043.1| DEAD/DEAH box helicase [Bacillus cereus biovar anthracis str. CI]
gi|364510067|gb|AEW53466.1| Cold-shock DEAD-box protein A [Bacillus cereus F837/76]
gi|384383959|gb|AFH81620.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus anthracis str.
H9401]
Length = 528
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|334705332|ref|ZP_08521198.1| ATP-dependent RNA helicase [Aeromonas caviae Ae398]
Length = 613
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 133/239 (55%), Gaps = 11/239 (4%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++++++K+L P I + A I+ T K ++ L+ V
Sbjct: 168 LFSATMPEQIRRVAQKHLKQPKEIKIASKT--ATATTIRQRYWQVTGLHKLDAMTRLLEV 225
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ +VF +TK A+E++ L + A EALHGDI Q RERT++ RQG+ +L+A
Sbjct: 226 ESYEA-LLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIA 284
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDV ARGLD+ + +++Y++P D E++VHR GRTGRAG++G AIL +RR +R++E
Sbjct: 285 TDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIE 344
Query: 181 RDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
E + P ED+ L E++ T+ G E +E + LIEE D
Sbjct: 345 HATRQAIEPMKMPSTEDINQHRLAKFKERIRETMMG---EELEIYHNLVNELIEEDSAD 400
>gi|228950768|ref|ZP_04112897.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229067991|ref|ZP_04201304.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185]
gi|229077588|ref|ZP_04210230.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2]
gi|229176827|ref|ZP_04304229.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W]
gi|423422457|ref|ZP_17399488.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3X2-2]
gi|423433901|ref|ZP_17410882.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus
BAG4X12-1]
gi|423507747|ref|ZP_17484314.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HD73]
gi|449086891|ref|YP_007419332.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar kurstaki str. HD73]
gi|228606719|gb|EEK64138.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W]
gi|228705727|gb|EEL58071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2]
gi|228715129|gb|EEL66992.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185]
gi|228808908|gb|EEM55398.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|401119847|gb|EJQ27653.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3X2-2]
gi|401128051|gb|EJQ35755.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus
BAG4X12-1]
gi|402443146|gb|EJV75059.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HD73]
gi|449020648|gb|AGE75811.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar kurstaki str. HD73]
Length = 525
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|206972279|ref|ZP_03233226.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH1134]
gi|218235804|ref|YP_002365074.1| DEAD/DEAH box helicase [Bacillus cereus B4264]
gi|228919172|ref|ZP_04082546.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|229148635|ref|ZP_04276889.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550]
gi|365163836|ref|ZP_09359936.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus sp.
7_6_55CFAA_CT2]
gi|423415878|ref|ZP_17392998.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3O-2]
gi|423428328|ref|ZP_17405332.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG4O-1]
gi|423578634|ref|ZP_17554745.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD014]
gi|423638228|ref|ZP_17613880.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD156]
gi|206732853|gb|EDZ50028.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH1134]
gi|218163761|gb|ACK63753.1| DEAD/DEAH box helicase [Bacillus cereus B4264]
gi|228634893|gb|EEK91468.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550]
gi|228840483|gb|EEM85750.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|363614642|gb|EHL66125.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus sp.
7_6_55CFAA_CT2]
gi|401094716|gb|EJQ02789.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3O-2]
gi|401126650|gb|EJQ34386.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG4O-1]
gi|401220492|gb|EJR27125.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD014]
gi|401271731|gb|EJR77736.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD156]
Length = 533
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|411008888|ref|ZP_11385217.1| ATP-dependent RNA helicase [Aeromonas aquariorum AAK1]
Length = 589
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 132/239 (55%), Gaps = 11/239 (4%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++++++K+L P I + A I+ T K ++ L+ V
Sbjct: 145 LFSATMPEQIRRVAQKHLKQPKEIKIASKT--ATATTIRQRYWQVTGLHKLDAMTRLLEV 202
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+VF +TK A+E++ L + A EALHGDI Q RERT++ RQG+ +L+A
Sbjct: 203 EPYEA-LLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIA 261
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDV ARGLD+ + +++Y++P D E++VHR GRTGRAG++G AIL +RR +R++E
Sbjct: 262 TDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIE 321
Query: 181 RDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
E + P ED+ L E++ T+ G E +E + LIEE D
Sbjct: 322 HATRQAIEPMKMPSTEDINQHRLAKFKERIRETMMG---EELEIYVNLVNELIEEDSAD 377
>gi|423398827|ref|ZP_17376028.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-1]
gi|423409729|ref|ZP_17386878.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-3]
gi|401646011|gb|EJS63645.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-1]
gi|401652844|gb|EJS70396.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-3]
Length = 531
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + +++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIESDNLSYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|423515083|ref|ZP_17491564.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA2-4]
gi|401168046|gb|EJQ75314.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA2-4]
Length = 540
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + I+F +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIIFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + +++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|423370478|ref|ZP_17347885.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD142]
gi|401073949|gb|EJP82358.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD142]
Length = 542
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + I+F +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIIFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + +++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|163938237|ref|YP_001643121.1| DEAD/DEAH box helicase [Bacillus weihenstephanensis KBAB4]
gi|229131241|ref|ZP_04260147.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST196]
gi|423514499|ref|ZP_17491006.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA2-1]
gi|163860434|gb|ABY41493.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
KBAB4]
gi|228652232|gb|EEL08163.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST196]
gi|402442074|gb|EJV74016.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA2-1]
Length = 538
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + I+F +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIIFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + +++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|117621384|ref|YP_857155.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|117562791|gb|ABK39739.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 642
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 132/239 (55%), Gaps = 11/239 (4%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++++++K+L P I + A I+ T K ++ L+ V
Sbjct: 198 LFSATMPEQIRRVAQKHLKQPKEIKIASKT--ATATTIRQRYWQVTGLHKLDAMTRLLEV 255
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+VF +TK A+E++ L + A EALHGDI Q RERT++ RQG+ +L+A
Sbjct: 256 EPYEA-LLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIA 314
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDV ARGLD+ + +++Y++P D E++VHR GRTGRAG++G AIL +RR +R++E
Sbjct: 315 TDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIE 374
Query: 181 RDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
E + P ED+ L E++ T+ G E +E + LIEE D
Sbjct: 375 HATRQAIEPMKMPSTEDINQHRLAKFKERIRETMMG---EELEIYVNLVNELIEEDSAD 430
>gi|323453440|gb|EGB09312.1| hypothetical protein AURANDRAFT_895, partial [Aureococcus
anophagefferens]
Length = 591
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 119/362 (32%), Positives = 188/362 (51%), Gaps = 43/362 (11%)
Query: 1 MLFSATMPSWVKKLSRKY--LDNPLN-IDLVGNQ--DEKLAEGIKLYAISTTATSK---- 51
+LFSAT+P WV+ +++ Y D L IDLVG+ D + G + ST + K
Sbjct: 186 LLFSATLPPWVRNIAKAYAQTDASLEAIDLVGSGGGDARDGLGGIVCQASTDVSHKCVPV 245
Query: 52 ------RTILSDLITVYAKGG--KTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQR 103
+++D++ Y G + ++F +TK + ++V + ALHGDI Q R
Sbjct: 246 ASWSMNHKVINDVVGAYGLNGAARCVLFCETKAECNDVVDSKEITYERRALHGDIPQALR 305
Query: 104 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN------DPETFVHRSGRTGR 157
E+T+ FR G+F +LVATDVAARGLD+ V+L+++ + P D ET+VHRSGRTGR
Sbjct: 306 EKTMAAFRAGQFKILVATDVAARGLDMV-VELVVNNKPPATRSGWADAETYVHRSGRTGR 364
Query: 158 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 217
AG++GT + ++ + R T+ +ER F++V P DVL ++A+ + + V P +
Sbjct: 365 AGRKGTCVTLYQTKHRATLEEIERKTKNAFDWVGAPRARDVLSAAADAALRAVEDVAPSA 424
Query: 218 VEFF----TPTAQRLIEEKGTDA-------LAAALAQLSGFSR-PPSSRSLINHEQGWVT 265
+ F A G+ A L AALA+L+G+ R P+ RSL+ + + +VT
Sbjct: 425 LPCFEDRAAALAATFAGRHGSSATGGYAEALRAALAKLAGYERGKPADRSLLTNSEHYVT 484
Query: 266 LQLTRDSAFSRGFMSARSVMGFL-SDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKE 324
A S V FL ++ P D + + ++A+ GAVFD P +
Sbjct: 485 CHY----AAGLPIHSISYVWNFLRRELKPEVCDALKAMQLVAEG--DGAVFDAPASAKAD 538
Query: 325 LL 326
L+
Sbjct: 539 LV 540
>gi|423614480|ref|ZP_17590337.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD107]
gi|401237929|gb|EJR44375.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD107]
Length = 533
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNENLSYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|390933807|ref|YP_006391312.1| DEAD/DEAH box helicase [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389569308|gb|AFK85713.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 513
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 155/293 (52%), Gaps = 13/293 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
M+FSATMP +K L++KY+ N I +V + ++ + + L ++
Sbjct: 178 MMFSATMPDEIKNLAKKYMKSNAKFISIV--KKTMTVSTVQHFYYEVKNQERFESLCRIL 235
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
V + TI+F +TK++ DE++ + S E +HGD+SQ+QR TL F++G L
Sbjct: 236 DV-DEPSSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGILDFL 294
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARG+DI NV +I+Y LP D E++VHR GRTGRA + G A + TS + ++
Sbjct: 295 VATDVAARGIDIENVTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYPALKR 354
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDAL 237
+E+ CK + P V+D+LE +++A + + + F P A L EE +
Sbjct: 355 IEKATRCKIKRKELPTVDDILEVKYNKMIAEIKKTLEKNDYKRFVPLAMELDEEYNLVDV 414
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSD 290
AAAL + + R+ I + + + L R F++ R+ + L+D
Sbjct: 415 AAALMDM--YYGEDVYRNDIERDYLRLFINLGRKDKFNK-----RTAIKLLAD 460
>gi|423206263|ref|ZP_17192819.1| hypothetical protein HMPREF1168_02454 [Aeromonas veronii AMC34]
gi|404621815|gb|EKB18680.1| hypothetical protein HMPREF1168_02454 [Aeromonas veronii AMC34]
Length = 633
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 133/239 (55%), Gaps = 11/239 (4%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++++++K+L P I + A I+ T K ++ L+ V
Sbjct: 187 LFSATMPEQIRRVAQKHLKQPKEIKIASKT--ATATTIRQRYWQVTGLHKLDAMTRLLEV 244
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ +VF +TK A+E++ L + A EALHGDI Q RERT++ RQG+ +L+A
Sbjct: 245 ESYEA-LLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIA 303
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDV ARGLD+ + +++Y++P D E++VHR GRTGRAG++G AIL +RR +R++E
Sbjct: 304 TDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIE 363
Query: 181 RDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
E + P ED+ L E++ T+ G E +E + LIEE D
Sbjct: 364 HATRQAIEPMKMPSTEDINQHRLAKFKERIRETMMG---EELEIYHNLVNELIEEDSAD 419
>gi|229165218|ref|ZP_04293010.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621]
gi|228618250|gb|EEK75283.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621]
Length = 519
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 160 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 217
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + I+F +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 218 IQSPE-LAIIFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGTIEVLV 276
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 277 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 336
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + +++ ++ A+ ++EE D++
Sbjct: 337 ERTTKRKVDRMDAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEE--NDSVT 394
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 395 VVAAALKMMTKEPDT 409
>gi|417303385|ref|ZP_12090443.1| cold-shock deAd box protein a [Rhodopirellula baltica WH47]
gi|327540357|gb|EGF26943.1| cold-shock deAd box protein a [Rhodopirellula baltica WH47]
Length = 862
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 145/253 (57%), Gaps = 7/253 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSAT+P ++K++ +YL++P I + A ++ A+ + K L+ ++ V
Sbjct: 414 LFSATLPKPIRKIADEYLNDPARITI--KSKTITAASVRQRALFVSPRDKIDALTRILEV 471
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G IVFT+TK V+ L+ ++ AL+GD+ Q RERT++ ++G+ VLVA
Sbjct: 472 EETDG-VIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVA 530
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+P + + +++LP+D E++VHR GRTGRAG+ G AI+ T++QRR +R +E
Sbjct: 531 TDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQLRFIE 590
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKG--TDAL 237
E + P V D+ E+ + + V + + + + EE G + +
Sbjct: 591 NTTKQPIEIIDIPTVADINEARVRRFKQRITDVSADQDLTVYKDMIAQYAEESGKPMEMI 650
Query: 238 AAALAQLSGFSRP 250
AAALA++S RP
Sbjct: 651 AAALAEMSQNGRP 663
>gi|330829254|ref|YP_004392206.1| DEAD/DEAH box helicase domain-containing protein [Aeromonas veronii
B565]
gi|423201948|ref|ZP_17188527.1| hypothetical protein HMPREF1167_02110 [Aeromonas veronii AER39]
gi|423210052|ref|ZP_17196606.1| hypothetical protein HMPREF1169_02124 [Aeromonas veronii AER397]
gi|328804390|gb|AEB49589.1| DEAD/DEAH box helicase domain protein [Aeromonas veronii B565]
gi|404615658|gb|EKB12619.1| hypothetical protein HMPREF1167_02110 [Aeromonas veronii AER39]
gi|404615940|gb|EKB12898.1| hypothetical protein HMPREF1169_02124 [Aeromonas veronii AER397]
Length = 633
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 133/239 (55%), Gaps = 11/239 (4%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++++++K+L P I + A I+ T K ++ L+ V
Sbjct: 187 LFSATMPEQIRRVAQKHLKQPKEIKIASKT--ATATTIRQRYWQVTGLHKLDAMTRLLEV 244
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ +VF +TK A+E++ L + A EALHGDI Q RERT++ RQG+ +L+A
Sbjct: 245 ESYEA-LLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIA 303
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDV ARGLD+ + +++Y++P D E++VHR GRTGRAG++G AIL +RR +R++E
Sbjct: 304 TDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIE 363
Query: 181 RDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
E + P ED+ L E++ T+ G E +E + LIEE D
Sbjct: 364 HATRQAIEPMKMPSTEDINQHRLAKFKERIRETMMG---EELEIYHNLVNELIEEDSAD 419
>gi|423197144|ref|ZP_17183727.1| hypothetical protein HMPREF1171_01759 [Aeromonas hydrophila SSU]
gi|404631894|gb|EKB28525.1| hypothetical protein HMPREF1171_01759 [Aeromonas hydrophila SSU]
Length = 631
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 132/239 (55%), Gaps = 11/239 (4%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++++++K+L P I + A I+ T K ++ L+ V
Sbjct: 187 LFSATMPEQIRRVAQKHLKQPKEIKIASKT--ATATTIRQRYWQVTGLHKLDAMTRLLEV 244
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+VF +TK A+E++ L + A EALHGDI Q RERT++ RQG+ +L+A
Sbjct: 245 EPYEA-LLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIA 303
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDV ARGLD+ + +++Y++P D E++VHR GRTGRAG++G AIL +RR +R++E
Sbjct: 304 TDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIE 363
Query: 181 RDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
E + P ED+ L E++ T+ G E +E + LIEE D
Sbjct: 364 HATRQAIEPMKMPSTEDINQHRLAKFKERIRETMMG---EELEIYVNLVNELIEEDSAD 419
>gi|423421599|ref|ZP_17398688.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3X2-1]
gi|401097261|gb|EJQ05289.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3X2-1]
Length = 532
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + +++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|229015638|ref|ZP_04172628.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273]
gi|229021830|ref|ZP_04178406.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272]
gi|423393316|ref|ZP_17370542.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1X1-3]
gi|228739470|gb|EEL89890.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272]
gi|228745658|gb|EEL95670.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273]
gi|401630235|gb|EJS48042.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1X1-3]
Length = 530
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + +++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|433447995|ref|ZP_20411254.1| DEAD-box ATP-dependent RNA helicase CshA [Anoxybacillus
flavithermus TNO-09.006]
gi|431999627|gb|ELK20547.1| DEAD-box ATP-dependent RNA helicase CshA [Anoxybacillus
flavithermus TNO-09.006]
Length = 471
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 142/247 (57%), Gaps = 7/247 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL-AEGIKLYAISTTATSKRTILSDLI 59
+LFSATMP +++++ +++ NP +LV + +++ I+ Y I K L+ L+
Sbjct: 182 LLFSATMPEPIRRIAERFMQNP---ELVRVKAKEMTVPNIEQYYIEIQEKKKFDTLTRLL 238
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ + IVF +TKR DE++ AL +E +HGD+SQ +R L F++G +L
Sbjct: 239 DIQS-PELAIVFGRTKRRVDELAEALNLRGYTAEGIHGDLSQAKRLSVLRKFKEGSIDIL 297
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G AI T + +
Sbjct: 298 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGMAITFVTPREIGQLHH 357
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVV-ATLNGVHPESVEFFTPTAQRLIEEKGTDAL 237
+E+ K E + PP +++ LES + L + ++ F+ A+ L+EE + +L
Sbjct: 358 IEKTTKRKMERMKPPTLDEALESQQRAAIEKLLTTIEHNNLSFYKRAAEELLEEHDSVSL 417
Query: 238 AAALAQL 244
AA ++
Sbjct: 418 VAACIKM 424
>gi|406677544|ref|ZP_11084726.1| hypothetical protein HMPREF1170_02934 [Aeromonas veronii AMC35]
gi|404624557|gb|EKB21391.1| hypothetical protein HMPREF1170_02934 [Aeromonas veronii AMC35]
Length = 633
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 133/239 (55%), Gaps = 11/239 (4%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++++++K+L P I + A I+ T K ++ L+ V
Sbjct: 187 LFSATMPEQIRRVAQKHLKQPKEIKIASKT--ATATTIRQRYWQVTGLHKLDAMTRLLEV 244
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ +VF +TK A+E++ L + A EALHGDI Q RERT++ RQG+ +L+A
Sbjct: 245 ESYEA-LLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIA 303
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDV ARGLD+ + +++Y++P D E++VHR GRTGRAG++G AIL +RR +R++E
Sbjct: 304 TDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLRAIE 363
Query: 181 RDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
E + P ED+ L E++ T+ G E +E + LIEE D
Sbjct: 364 HATRQAIEPMKMPSTEDINQHRLAKFKERIRETMMG---EELEIYHNLVNELIEEDSAD 419
>gi|228963331|ref|ZP_04124496.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228796359|gb|EEM43802.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 510
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 160 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 217
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 218 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 276
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 277 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 336
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 337 ERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNENLSYYKRIAEEMLEE--NDSVT 394
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 395 VVAAALKMMTKEPDT 409
>gi|311747453|ref|ZP_07721238.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1]
gi|126574812|gb|EAZ79183.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1]
Length = 580
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/253 (39%), Positives = 143/253 (56%), Gaps = 14/253 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+ FSATM + L+RKY +NP I + + E + I+ + K +++ L+
Sbjct: 183 VFFSATMAKPILDLTRKYQNNPEIIKVA--KKELTVDRIEQVFYEVKPSLKLELMARLMN 240
Query: 61 V--YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
V YA ++VF TKR DE + AL S I +EALHGD+SQ QR++ +N FR+G TV
Sbjct: 241 VNNYAL---SVVFCNTKRMTDEATEALGSRGILAEALHGDLSQAQRDKVMNKFRKGLCTV 297
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR--T 175
LVATDVAARG+D+ NV+ + +++LP D E++VHR GRTGRAGK G AI F + +R
Sbjct: 298 LVATDVAARGIDVDNVEAVFNFDLPLDDESYVHRIGRTGRAGKSGKAI-NFVTGRRDFGK 356
Query: 176 VRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV--HPESVEFFTPTA-QRLIEEK 232
+R LER + PP V D++E Q V ++ V E + F T Q L E
Sbjct: 357 IRDLERFTKASIAKMDPPSVSDLIELKKAQFVKDVHTVISKEEDNQIFEETVGQLLTEGL 416
Query: 233 GTDALAAALAQLS 245
+ +A L +L
Sbjct: 417 SIEQIALGLMKLQ 429
>gi|431931469|ref|YP_007244515.1| DNA/RNA helicase [Thioflavicoccus mobilis 8321]
gi|431829772|gb|AGA90885.1| DNA/RNA helicase, superfamily II [Thioflavicoccus mobilis 8321]
Length = 629
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 205/429 (47%), Gaps = 51/429 (11%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++++++ +L P+ I + + + I+ + T K +L+ ++ +
Sbjct: 203 LFSATMPPAIRRVAQTHLREPVEIKVAARSET--VDTIEQHHCLVTRYHKLDLLTRVLEI 260
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
++F +TK + E++ L + A+EAL+GD++Q RERT+ FR G+ +LVA
Sbjct: 261 QPFDA-ILIFVRTKTETVELAERLCAHGFAAEALNGDMNQVMRERTVERFRDGRLDILVA 319
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ V+L+++Y++PNDP +VHR GRTGRAG+ G A+L +R +R++E
Sbjct: 320 TDVAARGLDVERVNLVVNYDIPNDPAAYVHRIGRTGRAGRAGRAVLFVEPRERGLLRAIE 379
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDAL-- 237
R + + P E V ES + L + + ++FF R+ E+ + +
Sbjct: 380 RTIRQSVPAMDIPSAEAVSESRIGRFTEDLRTALADQDMDFFYRLVGRIAHEQELEVMDI 439
Query: 238 AAALAQLSGFSRP----------------------------------PSSRSLINHEQ-G 262
AAALA L RP P R Q G
Sbjct: 440 AAALAYLVQRERPLVVAEVPQPRIDADRRGRRDRPDRAGRDPRAGHGPRERRGPRETQNG 499
Query: 263 WVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIA 322
L R R + R ++G +++ +IG+I I D ++ DLP E+
Sbjct: 500 DAGLVAYRIEVGRRDGVGPREIVGAIANEAGIDGRQIGRIAIRDDH----SLVDLPAEMP 555
Query: 323 KELLNKQIPPGNTISKITKL-PALQD-DGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGG 380
+ L+ +Q+ K +L PA + GP D++ R DRF + G RG +GG
Sbjct: 556 RALV-QQLQRVYVCGKALQLHPAERGARGPERDDW-RGGGNDRFGQQGRPE-GRGAGKGG 612
Query: 381 ARGGGSMDR 389
G + DR
Sbjct: 613 RPGRFAGDR 621
>gi|229101040|ref|ZP_04231822.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-28]
gi|228682378|gb|EEL36473.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-28]
Length = 374
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 24 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 81
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 82 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 140
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 141 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 200
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + +++ ++ A+ ++EE D++
Sbjct: 201 ERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEE--NDSVT 258
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 259 VVAAALKMMTKEPDT 273
>gi|30018496|ref|NP_830127.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
gi|29894036|gb|AAP07328.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
Length = 514
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 160 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 217
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 218 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 276
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 277 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 336
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 337 ERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVT 394
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 395 VVAAALKMMTKEPDT 409
>gi|229009737|ref|ZP_04166960.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM
2048]
gi|229055077|ref|ZP_04195508.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603]
gi|423485535|ref|ZP_17462217.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BtB2-4]
gi|423491260|ref|ZP_17467904.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus CER057]
gi|423501944|ref|ZP_17478561.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus CER074]
gi|423596874|ref|ZP_17572899.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD048]
gi|423602239|ref|ZP_17578239.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD078]
gi|423665253|ref|ZP_17640392.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM022]
gi|423671681|ref|ZP_17646685.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM034]
gi|423672515|ref|ZP_17647454.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM062]
gi|228721261|gb|EEL72786.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603]
gi|228751532|gb|EEM01335.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM
2048]
gi|401151508|gb|EJQ58957.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus CER074]
gi|401161714|gb|EJQ69077.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus CER057]
gi|401218539|gb|EJR25216.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD048]
gi|401226140|gb|EJR32681.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD078]
gi|401290577|gb|EJR96269.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM022]
gi|401291502|gb|EJR97173.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM034]
gi|401311621|gb|EJS16907.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM062]
gi|402441494|gb|EJV73449.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BtB2-4]
Length = 538
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + I+F +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIIFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGTIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + +++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKVDRMDAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|288556913|ref|YP_003428848.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
gi|288548073|gb|ADC51956.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
Length = 539
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 142/249 (57%), Gaps = 7/249 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +KKLSR+Y+ P + + N+ E A I +K L +I
Sbjct: 178 LLFSATMPPAIKKLSRRYMTTPKTVTI--NKGEVTAPSIDQLYYKVLERNKIDSLCRIID 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ I+F +TK+ E++ AL + ++ LHGD++Q QR+ + FR L+
Sbjct: 236 -SEEVDLGILFCRTKKGVAELTEALQARGYLADGLHGDLTQSQRDAVMKKFRDSSIEFLI 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ NV +I+Y++P DPE++VHR GRTGRAG++G A+ + T + + +RS+
Sbjct: 295 ATDVAARGIDVDNVTHVINYDIPQDPESYVHRIGRTGRAGRKGLALTLVTPREMKHLRSI 354
Query: 180 ERDVGCKFEFVSPPVVEDVLE---SSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
E+++ P +EDV+E SS +++V + E F P Q ++ + +
Sbjct: 355 EQEIKMAIPSQDVPTIEDVVEKQQSSWKKLVHDTIDTGGKEFELFKPLVQEVLADHSPED 414
Query: 237 LAAALAQLS 245
+ AAL +++
Sbjct: 415 VVAALLKMN 423
>gi|52144993|ref|YP_081836.1| DEAD/DEAH box helicase [Bacillus cereus E33L]
gi|81689748|sp|Q63GX5.1|CSHA_BACCZ RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|51978462|gb|AAU20012.1| DEAD/DEAH box helicase [Bacillus cereus E33L]
Length = 528
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|423462498|ref|ZP_17439292.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5X2-1]
gi|401131792|gb|EJQ39442.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5X2-1]
Length = 528
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + +++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|152996400|ref|YP_001341235.1| DEAD/DEAH box helicase [Marinomonas sp. MWYL1]
gi|150837324|gb|ABR71300.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
Length = 632
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 146/253 (57%), Gaps = 7/253 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++++ ++L+NP + +V + K + +S K L+ ++ +
Sbjct: 187 LFSATMPAVIRQVANRHLNNPKEVKIVTKTSTAMTITQKYWPVS--GLHKLDALTRILEM 244
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +TK E++ LT+ A EAL+GDISQ+ RERT++ ++G+ +LVA
Sbjct: 245 NEHDG-MIIFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVDRIKKGQIDILVA 303
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDV ARGLD+ V +++Y++P D E++VHR GRTGRAG+ GTAIL +RR ++++E
Sbjct: 304 TDVVARGLDVERVSHVVNYDIPYDTESYVHRIGRTGRAGRSGTAILFVAHRERRMLQAIE 363
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDAL-- 237
R E ++ P D+ + ++ + + E ++FF Q +E D L
Sbjct: 364 RATRQPIESMTLPTASDINAHRVNRFKQSITDAMDNEDLDFFLELVQSYQKENEVDPLKM 423
Query: 238 AAALAQLSGFSRP 250
AAALA ++ P
Sbjct: 424 AAALAHMAQGKTP 436
>gi|333908310|ref|YP_004481896.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas
posidonica IVIA-Po-181]
gi|333478316|gb|AEF54977.1| DEAD/DEAH box helicase domain protein [Marinomonas posidonica
IVIA-Po-181]
Length = 616
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 148/256 (57%), Gaps = 13/256 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMPS +++++ ++L+NP + +V K + +S K L+ ++ +
Sbjct: 187 LFSATMPSVIRQVANRHLNNPKEVKIVTKTSTATTISQKYWQVS--GLHKLDALTRILEM 244
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +TK E++ LT+ A EAL+GDISQ+ RERT++ ++G+ +LVA
Sbjct: 245 NEHDG-MIIFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVDRIKKGQIDILVA 303
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDV ARGLD+ V +++Y++P D E++VHR GRTGRAG+ GTAIL +RR ++++E
Sbjct: 304 TDVVARGLDVERVSHVVNYDIPYDTESYVHRIGRTGRAGRSGTAILFVAHRERRMLQAIE 363
Query: 181 RDVGCKFEFVSPPVVEDVLESSA----EQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
R E ++ P D+ E +++ T++ E+++FF Q ++ D
Sbjct: 364 RATRQPIEKMNLPTASDINEQRVSRFKQRITDTMDN---ENLDFFLELVQSYQKDNEVDP 420
Query: 237 L--AAALAQLSGFSRP 250
L AAALA ++ P
Sbjct: 421 LKMAAALAHMAQGKTP 436
>gi|300856701|ref|YP_003781685.1| RNA helicase [Clostridium ljungdahlii DSM 13528]
gi|300436816|gb|ADK16583.1| predicted RNA helicase [Clostridium ljungdahlii DSM 13528]
Length = 525
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 171/339 (50%), Gaps = 27/339 (7%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSATMP +KKLS +Y+ N +I + N + K Y + L ++
Sbjct: 181 LLFSATMPDQIKKLSSRYMKSNIKSIKIAKNT--LTVDKTKQYYYEIKQKDRFESLCRIL 238
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
V + I+F +TKR DE+ L + E +HGD+ Q+QR TL F++G L
Sbjct: 239 DV-DEPSSAIIFCKTKRGVDELVEGLQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLEFL 297
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARG+D+ NV +I+Y+LP D E++VHR GRTGRA KEG A + T + ++
Sbjct: 298 VATDVAARGIDVENVSHVINYDLPQDTESYVHRIGRTGRANKEGIAYSLVTPREYILLKQ 357
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDAL 237
+E+ K P V+D+ E+ + + + + E + + F P A L EE +
Sbjct: 358 IEKFTKSKIRRKEIPTVDDIYEAKYKNIEEQVKSIISEDNYKNFIPIATELDEEYNLVDV 417
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSA--------RSVMGFLS 289
AAAL ++ F + S ++++ LT D R F+S R ++ F+S
Sbjct: 418 AAALMKII-FDKELS----FDYKEN----SLTVDEKDVRLFLSIGRMDNLTPRKLLKFIS 468
Query: 290 DVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNK 328
+ A EIG I I+ + ++PE ++ +L K
Sbjct: 469 ETSSVEAYEIGDIDILN----KFTFINVPERVSSIILKK 503
>gi|218895359|ref|YP_002443770.1| DEAD/DEAH box helicase [Bacillus cereus G9842]
gi|228906018|ref|ZP_04069910.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
IBL 200]
gi|228937529|ref|ZP_04100171.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228970416|ref|ZP_04131071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228976986|ref|ZP_04137394.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
Bt407]
gi|384184309|ref|YP_005570205.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|402562678|ref|YP_006605402.1| ATP-dependent RNA helicase [Bacillus thuringiensis HD-771]
gi|410672597|ref|YP_006924968.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus thuringiensis
Bt407]
gi|423364241|ref|ZP_17341734.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD022]
gi|423526472|ref|ZP_17502917.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB1-1]
gi|423565415|ref|ZP_17541691.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-A1]
gi|452196603|ref|YP_007476684.1| Cold-shock DEAD-box protein A [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|218543277|gb|ACK95671.1| DEAD/DEAH box helicase [Bacillus cereus G9842]
gi|228782733|gb|EEM30903.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
Bt407]
gi|228789302|gb|EEM37226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228822140|gb|EEM68126.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228853621|gb|EEM98386.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
IBL 200]
gi|326938018|gb|AEA13914.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|401073132|gb|EJP81571.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD022]
gi|401193994|gb|EJR00992.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-A1]
gi|401791330|gb|AFQ17369.1| ATP-dependent RNA helicase [Bacillus thuringiensis HD-771]
gi|402456266|gb|EJV88042.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB1-1]
gi|409171726|gb|AFV16031.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus thuringiensis
Bt407]
gi|452101996|gb|AGF98935.1| Cold-shock DEAD-box protein A [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 529
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNENLSYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|75760678|ref|ZP_00740704.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228898976|ref|ZP_04063254.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
IBL 4222]
gi|423387287|ref|ZP_17364541.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1X1-2]
gi|434378873|ref|YP_006613517.1| DEAD/DEAH box helicase [Bacillus thuringiensis HD-789]
gi|74491828|gb|EAO55018.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228860669|gb|EEN05051.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
IBL 4222]
gi|401629250|gb|EJS47075.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1X1-2]
gi|401877430|gb|AFQ29597.1| DEAD/DEAH box helicase [Bacillus thuringiensis HD-789]
Length = 521
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNENLSYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|157960395|ref|YP_001500429.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157845395|gb|ABV85894.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 623
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 138/252 (54%), Gaps = 6/252 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +K+++ KYLDNP+++ + E I+ + + +K L ++ V
Sbjct: 185 LFSATMPEQIKRVANKYLDNPVHVKIAATTST--VETIEQRFVQVSQHNKLEALVRVLEV 242
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +T+ E++ L + AS LHGD++Q RER + ++G+ +++A
Sbjct: 243 EKTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAIEQLKRGQLDIIIA 301
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P D E +VHR GRTGRAG+ G AIL T + R +R++E
Sbjct: 302 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIE 361
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIE--EKGTDALA 238
R + + P E V E ++ + + + +EF L + E TD LA
Sbjct: 362 RATNSRIAPMDVPSPETVTERRLSRLGEQVAEIISQDLEFMKGAVATLCQQLEVDTDILA 421
Query: 239 AALAQLSGFSRP 250
AAL + RP
Sbjct: 422 AALLKQVQKDRP 433
>gi|304315659|ref|YP_003850804.1| DEAD/DEAH box helicase [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
gi|302777161|gb|ADL67720.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 514
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/314 (31%), Positives = 158/314 (50%), Gaps = 27/314 (8%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
M+FSATMP +K L++KY+ + I +V + ++ + + L ++
Sbjct: 178 MMFSATMPDEIKNLAKKYMKSDAKFISIV--KKTMTVSTVQHFYYEVKNQERFESLCRIL 235
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
V + TI+F +TK++ DE++ + S E +HGD+SQ+QR TL F++G L
Sbjct: 236 DV-EEPSSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGNLDFL 294
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARG+DI N+ +I+Y LP D E++VHR GRTGRA + G A + TS + ++
Sbjct: 295 VATDVAARGIDIENLTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYPALKR 354
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV-HPESVEFFTPTAQRLIEEKGTDAL 237
+ER+ CK P ++D+ + +++ + V + + F P A L EE +
Sbjct: 355 IERETKCKIRRKELPTIDDIFQVKYNKMIKDIKRVLENDGYKRFVPLAMELDEEYNLVDV 414
Query: 238 AAALAQL-------SGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSD 290
AAAL + P R IN L R +R R+++ L D
Sbjct: 415 AAALMDMYYGKELYYNDDEPKYVRLFIN---------LGRKDKLNR-----RTLLKLLMD 460
Query: 291 VYPTAADEIGKIHI 304
+ + ++IG I I
Sbjct: 461 IGDISKEDIGTIDI 474
>gi|228956670|ref|ZP_04118461.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|423632143|ref|ZP_17607889.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD154]
gi|228803008|gb|EEM49835.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|401262038|gb|EJR68185.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD154]
Length = 517
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|229041132|ref|ZP_04189892.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676]
gi|423646358|ref|ZP_17621928.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD169]
gi|228727214|gb|EEL78411.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676]
gi|401287656|gb|EJR93433.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD169]
Length = 525
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|229107908|ref|ZP_04237540.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15]
gi|229125742|ref|ZP_04254771.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-Cer4]
gi|229143032|ref|ZP_04271470.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST24]
gi|296501059|ref|YP_003662759.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
gi|423590490|ref|ZP_17566552.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD045]
gi|423644958|ref|ZP_17620574.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD166]
gi|423653166|ref|ZP_17628465.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD200]
gi|146291075|sp|Q81IT9.2|CSHA_BACCR RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|228640440|gb|EEK96832.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST24]
gi|228657715|gb|EEL13524.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-Cer4]
gi|228675551|gb|EEL30763.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15]
gi|296322111|gb|ADH05039.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
gi|401220472|gb|EJR27106.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD045]
gi|401268292|gb|EJR74342.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD166]
gi|401302693|gb|EJS08265.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD200]
Length = 533
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|403387074|ref|ZP_10929131.1| ATP-dependent RNA helicase (superfamily II) [Clostridium sp. JC122]
Length = 546
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 106/335 (31%), Positives = 168/335 (50%), Gaps = 39/335 (11%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K L++ Y+ + + Q +++ IK + K L ++
Sbjct: 181 LLFSATMPKAIKSLAKNYMKSDAKHIAIAKQSLTVSK-IKQFYFEVGQKDKLEALCRILD 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V A I+F +TKR DE+ AL S E +HGD+ Q QR TL F+ G L+
Sbjct: 240 VDAPKS-AILFCKTKRGVDELVSALQSKGYIVEGMHGDMKQLQRLNTLKKFKTGNLNYLI 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ ++ +I+Y+LP D E++VHR GRTGRA KEGTA + + +R +
Sbjct: 299 ATDVAARGIDVEDITHVINYDLPQDTESYVHRIGRTGRANKEGTAYSFASRREMSMIRQI 358
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALA 238
E K E P + D+ S +E ++ ++ E S E F T++ LI+E G + +
Sbjct: 359 ENVTKSKMEKKQLPTLNDIYASKSESILESVKATLEENSYESFIQTSKDLIDEFGAEDVT 418
Query: 239 AALAQLSGFSRPPSSRSLINHEQGWVTLQ----LTRDSA--------FSRGF-------- 278
A+L ++ F + +N+E TL+ +RDS F+R F
Sbjct: 419 ASLMKIL-FDKE------LNYEYTQDTLKCEESFSRDSNRRDSNRRDFNRDFNKDTARLF 471
Query: 279 --------MSARSVMGFLSDVYPTAADEIGKIHII 305
+SA ++ FL + + E+G+I I+
Sbjct: 472 LSVGRLDKVSAIDLVKFLDNTAGVKSKELGRIDIL 506
>gi|421511440|ref|ZP_15958310.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus anthracis str.
UR-1]
gi|401818518|gb|EJT17718.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus anthracis str.
UR-1]
Length = 515
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 143 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 200
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 201 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 259
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 260 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 319
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 320 ERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVT 377
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 378 VVAAALKMMTKEPDT 392
>gi|319790474|ref|YP_004152107.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
HB-1]
gi|317114976|gb|ADU97466.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
HB-1]
Length = 417
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 135/242 (55%), Gaps = 11/242 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++L +YL VG Q + +K I + K L L+
Sbjct: 179 LLFSATMPYEIRRLIGRYLKPDYKNVKVGKQ--LITPKVKQRIILVRSEDKIKALEKLLK 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +G TIVF +TKRDA ++ L I + A+HGD+SQ QRE + FR+GK VLV
Sbjct: 237 EH-EGVSTIVFVKTKRDAADIEKELQRRGINARAIHGDLSQRQREFVMRAFREGKVKVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+DI +V L+I+YELP +PE++VHR GRTGRAG+EG AI + ++R + +
Sbjct: 296 ATDVAARGIDIKDVGLVINYELPENPESYVHRIGRTGRAGREGLAISLVAEPEKRRLYRI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
+ G + E V V E E + A N + P + A L+ E+ + L A
Sbjct: 356 KGLKGVRPERFR---VNTVKELKKELLEADANSLPP----YVKRLASELLSERSPEELVA 408
Query: 240 AL 241
L
Sbjct: 409 VL 410
>gi|291522717|emb|CBK81010.1| Superfamily II DNA and RNA helicases [Coprococcus catus GD/7]
Length = 526
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/252 (36%), Positives = 137/252 (54%), Gaps = 13/252 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP + +++R Y N + +V + E I+ Y +K +LS L+
Sbjct: 182 LLFSATMPQPIMEIARTYQKNAKIVKVV--KRELTVANIEQYYYEVRPKNKEEVLSRLLD 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+Y ++VF TKR DE+ L +E LHGD+ Q QR+R +NGFR G+ +LV
Sbjct: 240 IY-NPALSVVFCNTKRQVDELVEGLKGRGYFAEGLHGDMKQQQRDRVMNGFRNGRTEILV 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ +VD + +Y+LP D E +VHR GRTGRAGK G A T + ++ +
Sbjct: 299 ATDVAARGIDVDDVDAVFNYDLPQDDEYYVHRIGRTGRAGKNGKAFTFITGREFYKLKDI 358
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEK------G 233
+R K P + DV A+++ + G+ E + P R+IEEK
Sbjct: 359 QRYCRTKIIAKQVPSLNDVANVKADKIFEKVAGMIDE--DNLKPYI-RMIEEKLEKEDYT 415
Query: 234 TDALAAALAQLS 245
T LAAA +++
Sbjct: 416 TLDLAAAFLRMA 427
>gi|239626754|ref|ZP_04669785.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47_FAA]
gi|239516900|gb|EEQ56766.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47FAA]
Length = 572
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 141/249 (56%), Gaps = 7/249 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMP + ++RK+ D+P+ + ++ + E + Y +K ++ L+
Sbjct: 182 LMFSATMPQAIADIARKFQDDPVTVRVI--KKELTVPKVTQYYYEVKPKNKVEVMCRLLD 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+YA +IVF TKR DE+ AL +E LHGD+ Q QR+R + FR G+ +LV
Sbjct: 240 MYAPK-LSIVFCNTKRQVDELVQALQGRGYFAEGLHGDLKQVQRDRVMGSFRNGRTDILV 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ +V+ + +Y++P D E +VHR GRTGRAG+EG A + + +R +
Sbjct: 299 ATDVAARGIDVGDVEAVFNYDVPQDDEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRDI 358
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES--VEFFTPTAQRLIEEKGTDA- 236
+R K + P + D+ E E+V+ + + ++ + ++LIEE T
Sbjct: 359 QRYCKTKIIPQAIPSLNDITEIKVEKVLDQVMDILNDNDLTKMVNIIEKKLIEEDYTSMD 418
Query: 237 LAAALAQLS 245
LAAAL +++
Sbjct: 419 LAAALLKMN 427
>gi|345873134|ref|ZP_08825053.1| DEAD/DEAH box helicase domain protein [Thiorhodococcus drewsii AZ1]
gi|343917536|gb|EGV28334.1| DEAD/DEAH box helicase domain protein [Thiorhodococcus drewsii AZ1]
Length = 635
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 126/454 (27%), Positives = 220/454 (48%), Gaps = 57/454 (12%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++K++++ L +P+ + + N + + I + T K IL+ ++ +
Sbjct: 187 LFSATMPPVIRKVAQERLVDPIEVRIASNSE--TVDTIDQHHCIVTRFHKLDILTRILEL 244
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G ++F +TK E+S L + A+E L+GD++Q RERT+ +QG+ +LVA
Sbjct: 245 EPFDG-MLIFVRTKNATTELSDKLKAHGFAAEPLNGDMNQEMRERTVERLKQGQLDILVA 303
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P DP +VHR GRTGRAG+ G AIL+ +R ++++E
Sbjct: 304 TDVAARGLDVDRISHVVNYDIPTDPAAYVHRIGRTGRAGRSGRAILLVEPRERGLLKAIE 363
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDAL-- 237
R + + PP E + ES ++ +A + + + ++FF R+ +E+ + +
Sbjct: 364 RTIRRSVPPMDPPSAEALSESRIDRFIADVRKTMSDQDLDFFYRLLSRIGQEQEIEMIDV 423
Query: 238 AAALAQLSGFSRP---------PSSRSLI----------NH---------EQGWV----- 264
AA+LA L RP P R NH E+G
Sbjct: 424 AASLAYLYQRERPLDVKEDLPRPQRRDWSDERSRRGEGRNHSREGRPPRSERGPARRDNE 483
Query: 265 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKE 324
L R + + R ++G +++ IG+I+I D ++ DLP+ + +E
Sbjct: 484 NLVSYRIEVGHQHGATPREIVGAIANESGLEGRFIGRINIQNDH----SIVDLPDGMPRE 539
Query: 325 LLN--KQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGA- 381
+ + K++ +I+ A +D P+ ++ + G SRF G +G
Sbjct: 540 VFSHLKRVFVCGQALRISAAGATNEDSPARRSW------EPRQDSGASRFKAGPGQGKPK 593
Query: 382 --RGGGSMDRR--GFRSSRSWGSDDEDGFSSSRG 411
R G++ R+ G +S+GS D GF G
Sbjct: 594 TFRQSGNVRRQAEGAGPRKSFGSKDSKGFRGDHG 627
>gi|406668916|ref|ZP_11076207.1| hypothetical protein HMPREF9707_00110 [Facklamia ignava CCUG 37419]
gi|405585197|gb|EKB59032.1| hypothetical protein HMPREF9707_00110 [Facklamia ignava CCUG 37419]
Length = 547
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 137/244 (56%), Gaps = 7/244 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMPS +K L+ ++L +P ++ + Q A+ I Y + K IL+ I
Sbjct: 179 MLFSATMPSEIKALAEEFLRHPQHVQIEAQQ--MTADLIDQYFTKCSDGEKFDILTRFID 236
Query: 61 VYAKGGKTIVFTQTKRDADEVS--LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
++ + I+F +TK+ DEV LAL A E +HGDI+Q +R + + G +L
Sbjct: 237 IH-NPKQAIIFCRTKKRVDEVGRGLALRGYNA-EMIHGDITQQKRTSVIKELKDGVLEIL 294
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLDI V + +Y++P DPE++VHR GRTGRAGKEG +I T ++ +++
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMSITFVTHNEMAYLKT 354
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GVHPESVEFFTPTAQRLIEEKGTDAL 237
+E+ + + PP ++ +Q++ +N + E + TA+ L+E + L
Sbjct: 355 IEQLTRIQMMPMRPPTSKEAQHGQIQQLIDRMNLTLQSEEADALRNTAKMLLEHYEVNDL 414
Query: 238 AAAL 241
AL
Sbjct: 415 VTAL 418
>gi|358065981|ref|ZP_09152515.1| hypothetical protein HMPREF9473_04578 [Clostridium hathewayi
WAL-18680]
gi|356695844|gb|EHI57469.1| hypothetical protein HMPREF9473_04578 [Clostridium hathewayi
WAL-18680]
Length = 563
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 142/253 (56%), Gaps = 15/253 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMPS ++ +++K+ NP+ + +V + E + Y +K ++ L+
Sbjct: 182 VMFSATMPSAIQDIAKKFQKNPVIVKVV--KKELTVPKVTQYYYEVKPKTKLEVMCRLLD 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+YA ++ F TKR DE+ L +E LHGD+ Q QR+R +N FR GK +LV
Sbjct: 240 LYAPK-LSVAFCNTKRQVDELVQELQGRGYFAEGLHGDLKQIQRDRVMNSFRNGKTEILV 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ +V+ + +Y++P D E +VHR GRTGRAG+EG A + +R +
Sbjct: 299 ATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGIAFSFVVGKEVYKLRDI 358
Query: 180 ERDVGCKFEFVSPPV--VEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG 233
+R CK + V P+ + D+ ++ EQV +N + E ++L+EE
Sbjct: 359 QR--YCKTKIVPQPIPSLNDITAIKVDKILEQVADIIN--DNDLSEMVNLIEKKLLEEDY 414
Query: 234 TDA-LAAALAQLS 245
T LAAAL ++S
Sbjct: 415 TSMDLAAALLKMS 427
>gi|347529383|ref|YP_004836131.1| putative helicase [Sphingobium sp. SYK-6]
gi|345138065|dbj|BAK67674.1| putative helicase [Sphingobium sp. SYK-6]
Length = 588
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 112/342 (32%), Positives = 174/342 (50%), Gaps = 29/342 (8%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ + L+R+Y + L I V +QD + I A++ + + +L+
Sbjct: 182 LLFSATMPAPIVALARRYQRDALRISTV-SQDRGHGD-ISYQAMAIAPSDIENAVVNLLR 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + I+F T+ + + L + AL G+ SQ++R + L R + V V
Sbjct: 240 -FHEAETAILFCGTRDNVRHLHANLVERGFGAVALSGEHSQNERNQALQALRDRRARVCV 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+PN+ L+IH ++P D ET HRSGRTGRAGK+GTA+L+ +RR V S+
Sbjct: 299 ATDVAARGIDLPNLSLVIHVDIPRDAETLQHRSGRTGRAGKKGTAVLIVPYQRRRRVESM 358
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTDALA 238
R E+VSPP +D+ + +E+++ TL + P E E A RL+ E+ +A
Sbjct: 359 LRGARIPAEWVSPPSADDIRRADSERLLTTL--LAPVELDEQDHKLADRLLAERSAHDIA 416
Query: 239 AALAQ-----------LSGFSRPPSSRSLINHEQG--WVTLQLTRDSAFSRGFMSARSVM 285
AAL L G P +R +G W L + R R AR ++
Sbjct: 417 AALVHAHRVRLPAPEDLLGSDAPQEARQPRAGFEGSAWFRLNIGR-----RQNAEARWIL 471
Query: 286 GFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 327
L + +EIG I I A + +F++P +A L+
Sbjct: 472 PLLCRRGHVSRNEIGAIRIAASE----TLFEVPGALASRFLD 509
>gi|229188506|ref|ZP_04315550.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
10876]
gi|228594969|gb|EEK52744.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
10876]
Length = 528
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQNENLSYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|374329697|ref|YP_005079881.1| DEAD/DEAH box helicase [Pseudovibrio sp. FO-BEG1]
gi|359342485|gb|AEV35859.1| DEAD/DEAH box helicase domain protein [Pseudovibrio sp. FO-BEG1]
Length = 483
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 123/190 (64%), Gaps = 8/190 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDL--VGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
+L SATMP ++ L++++L NP I + V EK+ + ++ ++SKR L D+
Sbjct: 184 VLLSATMPIQIRNLAKEFLSNPHEISVAPVSRPIEKIDQSVRFL----NSSSKRAALLDI 239
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
++ + IVFT+TKR AD VS L ++S A+HG+ SQ RE++L+GF+ G+ +
Sbjct: 240 LS-EDDIERAIVFTRTKRGADRVSGHLEKAGLSSAAIHGNKSQRNREKSLDGFKNGRIKI 298
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATD+AARG+DI V +++YELPN PE +VHR GRT RAGK G A+ + ++++ +R
Sbjct: 299 LVATDIAARGIDIDGVSHVVNYELPNVPEAYVHRIGRTARAGKSGVAVSLCDATEQPYLR 358
Query: 178 SLERDVGCKF 187
+ER +G K
Sbjct: 359 DIERLIGRKI 368
>gi|225390528|ref|ZP_03760252.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme
DSM 15981]
gi|225043410|gb|EEG53656.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme
DSM 15981]
Length = 595
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 144/251 (57%), Gaps = 11/251 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMP + +++RK+ P+ + +V + E + Y +K ++ L+
Sbjct: 209 LMFSATMPPAIAEIARKFQKEPVTVRVV--KKELTVPKVTQYYYEVKPKNKVEVMCRLLD 266
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+YA +IVF TK+ DE+ AL +E LHGD+ Q QR+R +N FR G+ +LV
Sbjct: 267 LYAPK-LSIVFCNTKKQVDELVQALQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDILV 325
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ +V+ + +Y++P D E +VHR GRTGRAG+EG A + + +R +
Sbjct: 326 ATDVAARGIDVGDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVVGREVYKLRDI 385
Query: 180 ERDVGCKFEFV--SPPVVEDVLESSAEQVVATLNGVHPES--VEFFTPTAQRLIEEKGTD 235
+R CK + + P + D+ E E+++ + V +S + ++L+EE+ T
Sbjct: 386 QR--YCKTRIIPQAIPSLNDITEIKVEKILDQVEEVMNDSDLSKMVGIIEKKLMEEEYTS 443
Query: 236 A-LAAALAQLS 245
LAAAL +++
Sbjct: 444 LDLAAALLKMN 454
>gi|355670672|ref|ZP_09057419.1| hypothetical protein HMPREF9469_00456 [Clostridium citroniae
WAL-17108]
gi|354816109|gb|EHF00698.1| hypothetical protein HMPREF9469_00456 [Clostridium citroniae
WAL-17108]
Length = 569
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 142/249 (57%), Gaps = 7/249 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMP + +++K+ DNP+ + ++ + E + Y +K ++ L+
Sbjct: 182 LMFSATMPQAIADIAKKFQDNPVTVRVI--KKELTVPKVTQYYYEVKPKNKVEVMCRLLD 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+YA +IVF TKR D++ AL +E LHGD+ Q QR+R ++ FR G+ +LV
Sbjct: 240 MYAPK-LSIVFCNTKRQVDDLVQALQGRGYFAEGLHGDLKQIQRDRVMDSFRNGRTEILV 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ +V+ + +Y++P D E +VHR GRTGRAG+EG A + + +R +
Sbjct: 299 ATDVAARGIDVGDVEAVFNYDVPQDDEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRDI 358
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES--VEFFTPTAQRLIEEKGTDA- 236
+R K + P + D+ E E+V+ + + +S + ++L+EE T
Sbjct: 359 QRYCKTKIIPQAIPSLNDITEIKVEKVLDQVMDILNDSDLTKMVNIIEKKLMEEDYTSLD 418
Query: 237 LAAALAQLS 245
LAAAL +++
Sbjct: 419 LAAALLKMN 427
>gi|254473978|ref|ZP_05087371.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
gi|211956867|gb|EEA92074.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
Length = 483
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 123/190 (64%), Gaps = 8/190 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDL--VGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
+L SATMP ++ L++++L NP I + V EK+ + ++ ++SKR L D+
Sbjct: 184 VLLSATMPIQIRNLAKEFLSNPHEISVAPVSRPIEKIDQSVRFL----NSSSKRAALLDI 239
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
++ + IVFT+TKR AD VS L ++S A+HG+ SQ RE++L+GF+ G+ +
Sbjct: 240 LS-EDDIERAIVFTRTKRGADRVSGHLEKAGLSSAAIHGNKSQRNREKSLDGFKNGRIKI 298
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATD+AARG+DI V +++YELPN PE +VHR GRT RAGK G A+ + ++++ +R
Sbjct: 299 LVATDIAARGIDIDGVSHVVNYELPNVPEAYVHRIGRTARAGKSGVAVSLCDATEQPYLR 358
Query: 178 SLERDVGCKF 187
+ER +G K
Sbjct: 359 DIERLIGRKI 368
>gi|295702421|ref|YP_003595496.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
gi|294800080|gb|ADF37146.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
Length = 503
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 145/254 (57%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +++++ K+++ P + + E I Y + K IL+ L+
Sbjct: 179 LLFSATMPTPIRRIAEKFMNEPKVVKVQAK--EVTMPNITQYYLEVQEKRKFDILTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + I+F +TKR DE+S AL +++ +HGD++Q +R L F++G VLV
Sbjct: 237 MQSPE-LAIIFGRTKRRVDELSEALNMRGYSAQGIHGDLTQSKRLSVLRQFKEGSIDVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T + + ++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGAAMTFVTPRETGQLHNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
ER K E ++PP +++ +E L V ++ ++ A+ L+EE + +L
Sbjct: 356 ERTTKRKMERLTPPTLDEAMEGQQRIAADKLTESVTQGNLSYYKQLAEELLEEHDSVSLV 415
Query: 239 AALAQLSGFSRPPS 252
AA +L F++ P+
Sbjct: 416 AAAIKL--FTKEPN 427
>gi|228989414|ref|ZP_04149403.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides
DSM 12442]
gi|228770361|gb|EEM18936.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides
DSM 12442]
Length = 528
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 146/255 (57%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
E+ K + ++ P +++ LE + L + +++ ++ A+ ++EE D++
Sbjct: 356 EQTTKRKIDRMNAPTLDEALEGQQRLIAEKLQSTIESDNLAYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|228995609|ref|ZP_04155275.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides
Rock3-17]
gi|228764181|gb|EEM13062.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides
Rock3-17]
Length = 536
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 146/255 (57%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
E+ K + ++ P +++ LE + L + +++ ++ A+ ++EE D++
Sbjct: 356 EQTTKRKIDRMNAPTLDEALEGQQRLIAEKLQSTIESDNLAYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|423405051|ref|ZP_17382224.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-2]
gi|423479888|ref|ZP_17456602.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6X1-1]
gi|401645694|gb|EJS63344.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-2]
gi|402424280|gb|EJV56466.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6X1-1]
Length = 527
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + +++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|344340391|ref|ZP_08771316.1| DEAD/DEAH box helicase domain protein [Thiocapsa marina 5811]
gi|343799561|gb|EGV17510.1| DEAD/DEAH box helicase domain protein [Thiocapsa marina 5811]
Length = 623
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 143/253 (56%), Gaps = 7/253 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ ++++++ L +P+ I + D + + I + T K +L+ ++ +
Sbjct: 187 LFSATMPAGIRRVAQTRLSDPVEIRV--KADSETVDTIDQHHCVVTRFHKLDVLTRILEL 244
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G +VF +TK E++ L + A+E L+GD+SQ RERT+ +QG +LVA
Sbjct: 245 EPFDG-MLVFVRTKHATVELADKLKAHGFAAEPLNGDMSQEMRERTVERLKQGHLDILVA 303
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P DP +VHR GRTGRAG+ G AIL+ +R +R++E
Sbjct: 304 TDVAARGLDVERLSHVVNYDIPTDPSAYVHRIGRTGRAGRAGRAILLVEPRERGLLRAIE 363
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQRLIEEKGTDAL-- 237
R + + PP + ES ++ A L E ++FF RL E+ + +
Sbjct: 364 RTIRRSVPAMEPPSASQLSESRIDRFTAELRKTLTEQDLDFFYRLVARLATEQELEMMDI 423
Query: 238 AAALAQLSGFSRP 250
AAALA L+ RP
Sbjct: 424 AAALAYLTQRERP 436
>gi|229171082|ref|ZP_04298680.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3]
gi|228612412|gb|EEK69636.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3]
Length = 530
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + +++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|365156794|ref|ZP_09353090.1| hypothetical protein HMPREF1015_01991 [Bacillus smithii 7_3_47FAA]
gi|363626851|gb|EHL77816.1| hypothetical protein HMPREF1015_01991 [Bacillus smithii 7_3_47FAA]
Length = 473
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 142/251 (56%), Gaps = 12/251 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP ++ ++ K++ NP + + E I+ Y I K +LS L+
Sbjct: 179 LLFSATMPEPIRAIAEKFMKNPELVQVKAK--EMTVPQIEQYFIKIQEREKFDVLSRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V + IVF +TKR DE++ ALT ++E +HGD+SQ +R L F++GK VLV
Sbjct: 237 VQSPE-LAIVFGRTKRRVDELTRALTLRGYSAEGIHGDLSQMKRLNVLKKFKEGKVDVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++P DPE++VHR GRTGRAGKEG AI + + +R +
Sbjct: 296 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGIAITFVSPREMGYLREV 355
Query: 180 ERDVGCKFEFVSPPVVEDVL----ESSAEQVVATLNGVHPESVEFFTPTAQRLIEE-KGT 234
ER + + PP + L +++ ++ LN E++E + A L+ + +
Sbjct: 356 ERTTKKRMTPMQPPTWTEALIGQQKAAVNEIETCLNN---ENLEDYQELANELLAQFPPS 412
Query: 235 DALAAALAQLS 245
+AAAL L+
Sbjct: 413 QVVAAALKLLT 423
>gi|390941377|ref|YP_006405114.1| DNA/RNA helicase [Sulfurospirillum barnesii SES-3]
gi|390194484|gb|AFL69539.1| DNA/RNA helicase, superfamily II [Sulfurospirillum barnesii SES-3]
Length = 590
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 144/251 (57%), Gaps = 13/251 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI-KLYAISTTATSKRTILSDLI 59
+LFSATMP +K+L+ K L++P + V +D + I +LY + ++ L
Sbjct: 185 LLFSATMPDPIKRLASKILNDPKFVS-VTPKDHTTNDDIEQLYYVINEYERDDAMIRLLD 243
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ + K+IVF +TK++ D +S L ++ A++ LHGD+ Q+QRE + FR + +L
Sbjct: 244 ALEPE--KSIVFCRTKKEVDRLSTQLMAVGYAAKGLHGDMEQNQRESVIKAFRSSQIEIL 301
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGL++ ++ + +Y +P DPE++VHR GRTGRAGK+GTAI + T + +++
Sbjct: 302 VATDVAARGLNVADISHVFNYHMPFDPESYVHRIGRTGRAGKKGTAITLVTPIEFHSMQR 361
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG--VHPESVEFFTPTAQRLIEEKGTDA 236
+ + VG K E P + DV E+ ++ + +H +V+ L+EE+ D
Sbjct: 362 IGKKVGSKIEHRIVPSLRDVKENKLVKIADDIKNADIHESAVKLLA-----LLEEE-MDM 415
Query: 237 LAAALAQLSGF 247
AL LS
Sbjct: 416 SQIALKLLSNL 426
>gi|300781459|ref|ZP_07091313.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
33030]
gi|300533166|gb|EFK54227.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
33030]
Length = 675
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 127/198 (64%), Gaps = 4/198 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ ++++S YL++P + + + I + T +K ++ ++ V
Sbjct: 249 LFSATMPNAIRRISHDYLNDPEEVTVKAKT--RTNTNITQRYLFTAHRNKLDAITRVLEV 306
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ IVF +TK++ +E++ L + ++ A++GDI+Q QRERT++ R G+ +LVA
Sbjct: 307 -TEFDAMIVFVRTKQETEEIAEKLRARGFSAAAINGDIAQQQRERTVDMLRDGRLDILVA 365
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++PND E++VHR GRTGRAG+ G A+L T +RR +RS+E
Sbjct: 366 TDVAARGLDVERISHVLNYDIPNDTESYVHRIGRTGRAGRTGEALLFVTPRERRMLRSIE 425
Query: 181 RDVGCKFEFVSPPVVEDV 198
+ G K E + P V++V
Sbjct: 426 KVTGAKIEEMDLPTVDEV 443
>gi|288942738|ref|YP_003444978.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
vinosum DSM 180]
gi|288898110|gb|ADC63946.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
180]
Length = 662
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 145/253 (57%), Gaps = 7/253 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++++++ L +P+ + + N + + I+ + T K +L+ ++ +
Sbjct: 188 LFSATMPPAIRRVAQTRLVDPVEVKIAANSE--TVDTIEQHHCIVTRFHKLDVLTRIMEL 245
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G ++F +TK E++ L + A+E L+GD++Q RERT+ +QG+ VLVA
Sbjct: 246 EPFDG-LLIFVRTKNATTELADKLKAHGFAAEPLNGDMNQEMRERTVERLKQGQLDVLVA 304
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P DP +VHR GRTGRAG+ G AIL+ +R ++S+E
Sbjct: 305 TDVAARGLDVERISHVVNYDIPTDPSAYVHRIGRTGRAGRAGRAILLVEPRERGLLKSIE 364
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQRLIEEKGTDAL-- 237
R + + PP + ES ++ + + E ++FF R+ +E+ + L
Sbjct: 365 RVIRRPIPSMEPPSAAALSESRIDRFIGEIRKAQSEQDLDFFYRLLARISQEQEIEMLDI 424
Query: 238 AAALAQLSGFSRP 250
AAALA L+ RP
Sbjct: 425 AAALAYLNQRERP 437
>gi|260063169|ref|YP_003196249.1| ATP-dependent RNA helicase [Robiginitalea biformata HTCC2501]
gi|88783263|gb|EAR14435.1| ATP-dependent RNA helicase [Robiginitalea biformata HTCC2501]
Length = 579
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 142/250 (56%), Gaps = 6/250 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ V +++R ++ P + VG ++E +A Y T A R +
Sbjct: 169 LFSATMPNAVARIARDFMHQPAEVT-VGTRNEAIASVQHEY--YTVAGRDRYPALRRLAD 225
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G +++F +TKRD +V+ L + ALHGD+SQ QR+ +N FR+ + +LVA
Sbjct: 226 ANPGLFSVIFCRTKRDTQKVAEKLIEDGYNAGALHGDLSQQQRDLVMNAFRKRQLQLLVA 285
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARG+D+ +V +IHY+LP++ ET+ HRSGRTGRAGK G ++++ T S++R +R++E
Sbjct: 286 TDVAARGIDVDDVTHVIHYQLPDETETYTHRSGRTGRAGKSGVSMVILTRSEQRRIRAIE 345
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAA 239
+ +G FE P ++ E + + V S+E + P + + + D L
Sbjct: 346 KIIGRPFEQKKLPDGMEICEIQLYHLANKIRSVEVNPSIEAYLPAIEDVFKGMDRDTLIR 405
Query: 240 ALAQLSGFSR 249
+ + FSR
Sbjct: 406 KMISVE-FSR 414
>gi|229074285|ref|ZP_04207329.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18]
gi|229094946|ref|ZP_04225949.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29]
gi|229113900|ref|ZP_04243333.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3]
gi|423381728|ref|ZP_17359011.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1O-2]
gi|423444415|ref|ZP_17421320.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG4X2-1]
gi|423450244|ref|ZP_17427122.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5O-1]
gi|423467853|ref|ZP_17444621.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6O-1]
gi|423537254|ref|ZP_17513672.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB2-9]
gi|423542981|ref|ZP_17519369.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB4-10]
gi|423543712|ref|ZP_17520070.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB5-5]
gi|423620164|ref|ZP_17595995.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD115]
gi|423626833|ref|ZP_17602608.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD148]
gi|228669561|gb|EEL24970.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3]
gi|228688479|gb|EEL42354.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29]
gi|228708837|gb|EEL60966.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18]
gi|401126252|gb|EJQ33996.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5O-1]
gi|401167096|gb|EJQ74390.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB4-10]
gi|401186994|gb|EJQ94070.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB5-5]
gi|401248889|gb|EJR55208.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD115]
gi|401250188|gb|EJR56490.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD148]
gi|401628655|gb|EJS46489.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1O-2]
gi|402411097|gb|EJV43473.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG4X2-1]
gi|402412290|gb|EJV44650.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6O-1]
gi|402459706|gb|EJV91442.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB2-9]
Length = 529
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + +++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|407708172|ref|YP_006831757.1| hypothetical protein MC28_4936 [Bacillus thuringiensis MC28]
gi|407385857|gb|AFU16358.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
MC28]
Length = 507
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + +++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|407794038|ref|ZP_11141068.1| ATP-dependent RNA helicase [Idiomarina xiamenensis 10-D-4]
gi|407213891|gb|EKE83744.1| ATP-dependent RNA helicase [Idiomarina xiamenensis 10-D-4]
Length = 605
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 133/232 (57%), Gaps = 5/232 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ ++KL++++L + +NI + + +K + I+ A + K T L+ L+
Sbjct: 187 LFSATMPTQIRKLAQRFLRDSVNIRIETAKQDKAS--IRQLAWQVSVLHKMTALTRLLET 244
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ +VF +T++D EV+ L + AL+GD++Q QRE+T+N R G +LVA
Sbjct: 245 M-DYQRVLVFVRTRQDTMEVAEQLQGQGFKAAALNGDLNQAQREQTVNQLRSGHIEILVA 303
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDV ARGLD+P + +I+Y+LP D E++VHR GRTGRAG+ G AIL F +R ++ E
Sbjct: 304 TDVVARGLDVPEITHVINYDLPGDHESYVHRIGRTGRAGRSGEAILFFRPRERHLLKHYE 363
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEE 231
R + E+ P + +Q++ L V + + Q+++ E
Sbjct: 364 RATNSRIEYFEVPTAAQLSSHRQQQLLKKLTANVEQQDLTQMQTLLQQMVSE 415
>gi|269838391|ref|YP_003320619.1| DEAD/DEAH box helicase [Sphaerobacter thermophilus DSM 20745]
gi|269787654|gb|ACZ39797.1| DEAD/DEAH box helicase domain protein [Sphaerobacter thermophilus
DSM 20745]
Length = 526
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 122/199 (61%), Gaps = 6/199 (3%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL-AEGIKLYAISTTATSKRTILSDLIT 60
LFSAT+P V L+R+YL +P V + E++ I+ + +K L+ ++
Sbjct: 180 LFSATIPDRVAALARRYLRDPAR---VAVEPERVTVPQIEQTYVEVVQRAKVEALTRILD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ I+F +TKR DE++ L S+ A+EALHGD+SQ QR+R + FR G+ +L+
Sbjct: 237 METPP-SAIIFCRTKRGVDELTQQLQSLGYAAEALHGDLSQVQRDRVMARFRSGQAELLI 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ + +I+Y++P DPE++VHR GRTGRAG+ G AI + T +RR +R +
Sbjct: 296 ATDVAARGLDVEGITHVINYDIPGDPESYVHRIGRTGRAGRAGAAITLVTPRERRLLREI 355
Query: 180 ERDVGCKFEFVSPPVVEDV 198
ER G + P E+V
Sbjct: 356 ERATGVRMTRRGVPTPEEV 374
>gi|210623578|ref|ZP_03293904.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
gi|210153448|gb|EEA84454.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
Length = 538
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 120/203 (59%), Gaps = 4/203 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
FSATMP + +L++KY + P +I +V + E E IK Y I T A++K +LS LI V
Sbjct: 183 FFSATMPKAILELTKKYQNEPEHIKVV--RKELTVENIKQYYIETRASNKIEVLSRLIDV 240
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
Y ++VF TK+ ADE+ L ++ALHGD+ Q QR+ ++ FR G +LVA
Sbjct: 241 Y-NPKLSVVFCNTKKGADELVGELQGRGYFADALHGDLKQVQRDIVMDKFRNGTIDILVA 299
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARG+D+ +V+ + +++LP D E +VHR GRTGRAG+EG + R ++ +E
Sbjct: 300 TDVAARGIDVDDVECVFNFDLPQDEEYYVHRIGRTGRAGREGLSFSFVYGRDMRKMKDIE 359
Query: 181 RDVGCKFEFVSPPVVEDVLESSA 203
R K E P V DV E
Sbjct: 360 RYTKSKLEKHPIPTVGDVEEKKV 382
>gi|311071129|ref|YP_003976052.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
gi|419823024|ref|ZP_14346587.1| ATP-dependent RNA helicase [Bacillus atrophaeus C89]
gi|310871646|gb|ADP35121.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
gi|388472831|gb|EIM09591.1| ATP-dependent RNA helicase [Bacillus atrophaeus C89]
Length = 497
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 141/247 (57%), Gaps = 5/247 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ NP ++ + E I+ + + K L+ L+
Sbjct: 180 LLFSATMPAPIKRIAERFMTNPEHVKVKAK--EMTVSNIQQFYLEVHERKKFDTLTRLLD 237
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL +E +HGD++Q +R L F+QG VLV
Sbjct: 238 IQSPE-LAIVFGRTKRRVDELSEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLV 296
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAI 356
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ +E + V L + E ++ F+ A L+E+ +
Sbjct: 357 EQTTKRKMDRMKEPTLDEAIEGQQQVTVDRLRTIISENNLNFYMTAAAELLEDHDAVTVV 416
Query: 239 AALAQLS 245
AA ++S
Sbjct: 417 AAAIKMS 423
>gi|229159401|ref|ZP_04287421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803]
gi|228624068|gb|EEK80874.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803]
Length = 528
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + +++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|333895980|ref|YP_004469854.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333111245|gb|AEF16182.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 513
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 137/247 (55%), Gaps = 6/247 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
M+FSATMP +K L++KY+ + I +V + ++ + + L ++
Sbjct: 178 MMFSATMPDEIKNLAKKYMKSDAKFISIV--KKTMTVSTVQHFYYEVKNQERFESLCRIL 235
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
V + TI+F +TK++ DE++ + S E +HGD+SQ+QR TL F++G L
Sbjct: 236 DV-EEPSSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGILDFL 294
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARG+DI NV +I+Y LP D E++VHR GRTGRA + G A + TS + ++
Sbjct: 295 VATDVAARGIDIENVTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYPALKR 354
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDAL 237
+E+ CK + P V+D+LE +++A + + + F P A L EE +
Sbjct: 355 IEKATRCKIKRKELPTVDDILEVKYNKMIAEIKKTLEKNDYKRFVPLAMELDEEYNLVDV 414
Query: 238 AAALAQL 244
AAAL +
Sbjct: 415 AAALMDM 421
>gi|313885567|ref|ZP_07819317.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619297|gb|EFR30736.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola
ACS-139-V-Col8]
Length = 526
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 141/243 (58%), Gaps = 5/243 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMP V+ L++++L P + + A+ I Y + + K IL+ ++
Sbjct: 179 LMFSATMPKSVQNLAQQFLTQPAEVKIEAKH--LTADLIDQYFVKCRDSEKFDILTRMLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + K I+F +TK+ DE+ L+ +E +HGD++Q +R + +N F+QG+ +LV
Sbjct: 237 IESPD-KAIIFARTKKRVDEIGRGLSLRGYDAELIHGDVTQQKRTQVMNEFKQGRLELLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ V + +Y++P DPE++VHR GRTGRAG EG ++ S+ +R++
Sbjct: 296 ATDVAARGIDVSGVTHVYNYDIPQDPESYVHRIGRTGRAGNEGQSVTFVMESELPYLRTI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALA 238
E + + PP ++ S +Q++ LN + +V+ + TA+ L+ ++AL
Sbjct: 356 ESLTKNQMTPMRPPTDQEAEASQVQQLIDRLNATIADGTVDPYRATAKLLLNHYESNALV 415
Query: 239 AAL 241
A L
Sbjct: 416 AGL 418
>gi|24375521|ref|NP_719564.1| ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1]
gi|24350394|gb|AAN57008.1|AE015835_4 ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1]
Length = 623
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 137/256 (53%), Gaps = 14/256 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +K+++ K+L N NI + + + I+ + + +K L ++ V
Sbjct: 184 LFSATMPEQIKRVANKHLKNATNISIAASH--TTVDSIEQRFVQVSQHNKLEALVRVLEV 241
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +T+ E++ L + AS LHGD++Q RER + + GK +L+A
Sbjct: 242 ENTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIA 300
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P D E +VHR GRTGRAG+ G AIL TS + R +R++E
Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360
Query: 181 RDVGCKFEFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIE--EKGT 234
R + + P E V E EQ+ T+N +EF +L + E T
Sbjct: 361 RATNSRISPMKVPSPETVAERRLSRLGEQLAQTMNN----DLEFMREAVAQLCQQLEVDT 416
Query: 235 DALAAALAQLSGFSRP 250
D LAAAL RP
Sbjct: 417 DLLAAALLHQVQQERP 432
>gi|374995988|ref|YP_004971487.1| DNA/RNA helicase [Desulfosporosinus orientis DSM 765]
gi|357214354|gb|AET68972.1| DNA/RNA helicase, superfamily II [Desulfosporosinus orientis DSM
765]
Length = 536
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 129/207 (62%), Gaps = 4/207 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP ++KL++ Y+++P ++ + ++DE I+ T + K L +I
Sbjct: 185 LLFSATMPPGIRKLAQTYMNSPRSVTV--SRDELTVPLIEQVFYETRESIKVDALGRIID 242
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ G+ I+F +TKR DE+ +AL + ++ALHGD+SQ QR+R + FR GK +LV
Sbjct: 243 M-EDIGQGIIFCRTKRGVDELVVALEARGYFADALHGDLSQQQRDRVMKRFRDGKSELLV 301
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI NV +I++++P DP ++VHR GRTGR G++G AI + + + R +R +
Sbjct: 302 ATDVAARGLDINNVTHVINFDIPQDPVSYVHRIGRTGRVGRKGQAITLISPKEYRQLRLI 361
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQV 206
E + + P + D+ E AE +
Sbjct: 362 ENLIKTRIRRQELPSMADISERQAENI 388
>gi|347758173|ref|YP_004865735.1| DEAD/DEAH box helicase [Micavibrio aeruginosavorus ARL-13]
gi|347590691|gb|AEP09733.1| DEAD/DEAH box helicase family protein [Micavibrio aeruginosavorus
ARL-13]
Length = 649
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 121/205 (59%), Gaps = 12/205 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
M+FSAT+P ++ KLS +YL NP + + ++ A IK + T + K L +
Sbjct: 173 MMFSATIPPYISKLSAQYLKNPQRVSI--GEESTAAPKIKQELVHTNHSEKYNAL--VGQ 228
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + G I+F +TK AD ++ LT SEALHGD+ Q++R+R + FR K+ +LV
Sbjct: 229 LDQREGSVIIFVKTKHGADRLARKLTQDDFRSEALHGDLRQNKRDRVIRSFRDKKYRILV 288
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDIP+++ +++Y+LP E ++HR GRTGRAG EG A+ + TS +++
Sbjct: 289 ATDVAARGLDIPHIEHVVNYDLPQCAEDYIHRIGRTGRAGAEGNAVCLLTSEDGGKWKAI 348
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAE 204
+ ++PP D ES E
Sbjct: 349 HK-------LMNPPANGDKHESRDE 366
>gi|304385542|ref|ZP_07367886.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus
acidilactici DSM 20284]
gi|418069818|ref|ZP_12707095.1| superfamily II DNA/RNA helicase [Pediococcus acidilactici MA18/5M]
gi|304328046|gb|EFL95268.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus
acidilactici DSM 20284]
gi|357536349|gb|EHJ20380.1| superfamily II DNA/RNA helicase [Pediococcus acidilactici MA18/5M]
Length = 511
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 139/245 (56%), Gaps = 9/245 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +KK+ K++ +P + + E A+ + Y I + K +L+ +I
Sbjct: 178 LLFSATMPAPIKKIGVKFMTDPKQVTV--KSKELTADLVDQYYIRSKEFEKFDMLTRIID 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTVLV 119
V + +VF +TKR DEV+ L + + A +HGD++Q +R L+ FR G+ +LV
Sbjct: 236 VQSPK-LAVVFGRTKRRVDEVAKGLVARGYNAAGIHGDLTQQRRMNILHQFRDGQLDILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++P DPE++VHR GRTGRAG GT++ T+ + +R +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGAHGTSVTFVTNWEMDYLRDV 354
Query: 180 ERDVGCKFEFVSPPVVEDVL---ESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
ER + + PP E+ + AEQ V L V V+ F A RL+E+
Sbjct: 355 ERLTKKRLLPLKPPTEEEAFIGRAAMAEQNVQEL--VKKTDVDKFGEQADRLLEQYDART 412
Query: 237 LAAAL 241
L AAL
Sbjct: 413 LVAAL 417
>gi|427440715|ref|ZP_18924987.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus lolii
NGRI 0510Q]
gi|425787422|dbj|GAC45775.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus lolii
NGRI 0510Q]
Length = 511
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 139/245 (56%), Gaps = 9/245 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +KK+ K++ +P + + E A+ + Y I + K +L+ +I
Sbjct: 178 LLFSATMPAPIKKIGVKFMTDPKQVTV--KSKELTADLVDQYYIRSKEFEKFDMLTRIID 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTVLV 119
V + +VF +TKR DEV+ L + + A +HGD++Q +R L+ FR G+ +LV
Sbjct: 236 VQSPK-LAVVFGRTKRRVDEVAKGLVARGYNAAGIHGDLTQQRRMNILHQFRDGQLDILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++P DPE++VHR GRTGRAG GT++ T+ + +R +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGAHGTSVTFVTNWEMDYLRDV 354
Query: 180 ERDVGCKFEFVSPPVVEDVL---ESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
ER + + PP E+ + AEQ V L V V+ F A RL+E+
Sbjct: 355 ERLTKKRLLPLKPPTEEEAFIGRAAMAEQNVQEL--VKKTDVDKFGEQADRLLEQYDART 412
Query: 237 LAAAL 241
L AAL
Sbjct: 413 LVAAL 417
>gi|365121590|ref|ZP_09338507.1| hypothetical protein HMPREF1033_01853 [Tannerella sp.
6_1_58FAA_CT1]
gi|363645308|gb|EHL84577.1| hypothetical protein HMPREF1033_01853 [Tannerella sp.
6_1_58FAA_CT1]
Length = 596
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 143/252 (56%), Gaps = 7/252 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ + K+++KY+ NP + ++G+++E AE IK A K L I
Sbjct: 181 LLFSATMPAEIAKIAKKYMSNPKEV-VIGSKNEG-AENIKHVYYLVHAKDKYLALKR-IA 237
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y I+F +T+R+ E++ L +++LHG++SQ QR+ + FR +LV
Sbjct: 238 DYYPNIYGIIFCRTRRETQEIADQLIQDGYNADSLHGELSQAQRDAVMQKFRVKNLQLLV 297
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ N+ +I+Y LP+D ET+ HRSGRTGRAGK+GT+I + ++ +R +
Sbjct: 298 ATDVAARGLDVDNLTHVINYGLPDDIETYTHRSGRTGRAGKKGTSIAIIHVKEKGRMRDI 357
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLN--GVHPESVEFFTPTAQRLIEEKGTDAL 237
E+ +G KFE P + E +V + V+ E + + P+ R +E + L
Sbjct: 358 EKIIGKKFEKGHIPTGGQICEKQLFNLVDKIEKVKVNEEEIASYLPSIFRKLEWLSNEDL 417
Query: 238 AAALAQLSGFSR 249
+ L F+R
Sbjct: 418 IKRIVSLE-FNR 428
>gi|188996905|ref|YP_001931156.1| DEAD/DEAH box helicase domain-containing protein
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188931972|gb|ACD66602.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 405
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 118/192 (61%), Gaps = 3/192 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP + L+ ++L+ V DE E IK K L+++++
Sbjct: 184 LLFSATMPKEILDLAEEFLNENYETIRV-KPDEVTVEKIKQIIYRVNPRDKFKKLTEVLS 242
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ K I+FTQTK +ADE++ L + A+HGD SQ +RE L+ FR GK +LV
Sbjct: 243 -QNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKILV 301
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI VDL+I+Y LP D E+++HR GRTGRAG+EGTAI + T S+ + ++++
Sbjct: 302 ATDVAARGLDIKGVDLVINYGLPRDAESYIHRIGRTGRAGREGTAISIMTPSEDKQLQNI 361
Query: 180 ERDVGCKFEFVS 191
++ E ++
Sbjct: 362 QKKTKANIEVIN 373
>gi|56552313|ref|YP_163152.1| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
subsp. mobilis ZM4]
gi|260753995|ref|YP_003226888.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|384412590|ref|YP_005621955.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|56543887|gb|AAV90041.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ZM4]
gi|258553358|gb|ACV76304.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|335932964|gb|AEH63504.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 458
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 120/196 (61%), Gaps = 7/196 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+ FSATMP +++LS ++L +P+ + + AE ++ + I + K+ +L+ IT
Sbjct: 188 LFFSATMPKTIQELSSQFLSDPVTVSVAPQSST--AERVEQFGIFVNQSEKQALLT--IT 243
Query: 61 VYAKGG--KTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
+ G + +VFT+TK AD V L + + + A+HG+ SQ QRER LN FR G+ +
Sbjct: 244 LKNTPGLDRALVFTRTKHGADRVVRHLEAAGLPAAAIHGNKSQPQRERALNAFRNGRLKI 303
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATD+AARG+D+P V + +YELPN E +VHR GRT RAG++G AI + +R +R
Sbjct: 304 LVATDIAARGIDVPGVSHVFNYELPNVAEQYVHRIGRTARAGRDGQAISFIANDERSYLR 363
Query: 178 SLERDVGCKFEFVSPP 193
S+ER K + + P
Sbjct: 364 SIERLTRVKLQILPLP 379
>gi|390944989|ref|YP_006408750.1| DNA/RNA helicase [Belliella baltica DSM 15883]
gi|390418417|gb|AFL85995.1| DNA/RNA helicase, superfamily II [Belliella baltica DSM 15883]
Length = 591
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 138/238 (57%), Gaps = 13/238 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+ FSATMP + L+RKY +NP + ++ + E E I A S R L +
Sbjct: 183 VFFSATMPKPILDLTRKYQNNPEIVKVL--RKELTVENIS-QAYYEVRPSLRIELMVRLM 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ ++VF TKR DEV+ +L S I +EALHGD+SQ QR + +N FR+G +VLV
Sbjct: 240 ELNQFKLSVVFCNTKRSTDEVTESLISKGIMAEALHGDLSQAQRTKVMNKFRKGTCSVLV 299
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT--VR 177
ATDVAARG+D+ +V+ + +Y+LP D E +VHR GRTGRAGK G A L F + ++ T +R
Sbjct: 300 ATDVAARGIDVDDVEAVFNYDLPLDEENYVHRIGRTGRAGKSGMA-LSFVTGRKDTYRLR 358
Query: 178 SLERDVGCKFEFVSPPVVEDVLE----SSAEQVVATLNGVHPESVEFFTPTAQRLIEE 231
LE+ + + PP V D++E S + V A++N V E + F T ++ E
Sbjct: 359 DLEKFIKTTIHKMDPPSVTDLVELKKASLVKDVNASINKV--EDNQLFEETIGMMLAE 414
>gi|330836276|ref|YP_004410917.1| DEAD/DEAH box helicase [Sphaerochaeta coccoides DSM 17374]
gi|329748179|gb|AEC01535.1| DEAD/DEAH box helicase domain protein [Sphaerochaeta coccoides DSM
17374]
Length = 634
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 144/251 (57%), Gaps = 7/251 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+ FSATMP+ ++ L+++++ +P + +V L Y + + K L +I
Sbjct: 183 LCFSATMPAPIQNLAQRFMKDPKIVRVVSQDMTNLLTNQVCYEVR--ESDKLEALCRVID 240
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V A +VF +TK DEV+ L + ++ALHGD+SQ QRE LN FR+ + +VLV
Sbjct: 241 V-AVDFYGLVFCRTKLQCDEVTEKLVARGQDADALHGDLSQKQREAILNRFRRRQLSVLV 299
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+DIP++ +I+Y +P +PE ++HR GRTGRAG+ GTA+ T + ++ +
Sbjct: 300 ATDVAARGIDIPDLTHVINYSIPQNPEAYIHRIGRTGRAGRSGTAVTFITPREYSKLKYI 359
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVA-TLNGVHPESVEFFTPTAQRLIEEKGTDALA 238
+R + + P + D++E+ ++ T + + + F P A+ L+E + +
Sbjct: 360 QRIAHTEIHRETVPAISDIMEAKRNRIATETESLLTVAESDQFRPLARHLLESHAAEDVV 419
Query: 239 AALAQLSGFSR 249
AAL L+G ++
Sbjct: 420 AAL--LTGLNK 428
>gi|226229135|ref|YP_002763241.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca
T-27]
gi|226092326|dbj|BAH40771.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca
T-27]
Length = 594
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 130/214 (60%), Gaps = 9/214 (4%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEG----IKLYAISTTATSKRTILSD 57
LFSAT+P + +++K+L P+++ + + E +AEG ++ A + K L+
Sbjct: 196 LFSATLPPRIGGIAQKHLRQPVHVKV---EREVVAEGESARVRQVAYVVSRAHKMPALAR 252
Query: 58 LITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFT 116
++ + + IVF +T+ + DE+S LT+ + +EALHG +SQ QR+R + FR K
Sbjct: 253 VLDIE-QPTSAIVFCRTRTEVDELSETLTARGLRAEALHGGLSQDQRDRVMQKFRARKVD 311
Query: 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 176
+L+ATDVAARGLD+ +V ++++++P D ET+VHR GRTGRAG+EG A+ + R +
Sbjct: 312 LLIATDVAARGLDVKHVSHVVNFDVPVDAETYVHRIGRTGRAGREGVAVTFAEPRENRLL 371
Query: 177 RSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 210
R++ER G K E P V D+ E V ATL
Sbjct: 372 RNIERQTGQKIEIAQVPTVADLRAHRRELVRATL 405
>gi|397677505|ref|YP_006519043.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis ATCC
29191]
gi|395398194|gb|AFN57521.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 458
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 120/196 (61%), Gaps = 7/196 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+ FSATMP +++LS ++L +P+ + + AE ++ + I + K+ +L+ IT
Sbjct: 188 LFFSATMPKTIQELSSQFLSDPVTVSVAPQSST--AERVEQFGIFVNQSEKQALLT--IT 243
Query: 61 VYAKGG--KTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
+ G + +VFT+TK AD V L + + + A+HG+ SQ QRER LN FR G+ +
Sbjct: 244 LKNTPGLDRALVFTRTKHGADRVVRHLEAAGLPAAAIHGNKSQPQRERALNAFRNGRLKI 303
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATD+AARG+D+P V + +YELPN E +VHR GRT RAG++G AI + +R +R
Sbjct: 304 LVATDIAARGIDVPGVSHVFNYELPNVAEQYVHRIGRTARAGRDGQAISFIANDERSYLR 363
Query: 178 SLERDVGCKFEFVSPP 193
S+ER K + + P
Sbjct: 364 SIERLTRVKLQILPLP 379
>gi|452974255|gb|EME74076.1| DEAD/DEAH box helicase [Bacillus sonorensis L12]
Length = 487
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 144/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ ++++NP +I + E I+ + + K L+ L+
Sbjct: 180 LLFSATMPAPIKRIAERFMNNPEHIKVKAK--EMTVSNIQQFYLEVHERKKFDTLTRLLD 237
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL +E +HGD++Q +R L F+QG VLV
Sbjct: 238 IQSPE-LAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLV 296
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAI 356
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ +E + V + + ++ F+ A L+E+ DA+
Sbjct: 357 EQTTKRKMDRMKAPTLDEAIEGQQQVTVDRIRTIIEDNNLNFYMSAAAELLEDH--DAVT 414
Query: 239 AALAQLSGFSRPPSS 253
A + ++ P +
Sbjct: 415 VVAAAIKMMTKEPDN 429
>gi|374340782|ref|YP_005097518.1| DNA/RNA helicase [Marinitoga piezophila KA3]
gi|372102316|gb|AEX86220.1| DNA/RNA helicase, superfamily II [Marinitoga piezophila KA3]
Length = 533
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 143/248 (57%), Gaps = 7/248 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ-DEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSATMPS + KL++KY+ N I + Q +L E I + K L +I
Sbjct: 182 LLFSATMPSRILKLAKKYMSNYKIISVKPEQLTTELTEQI---YFEVNESDKFEALCRII 238
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ + +VF +TK D D VS L ++EALHGD+SQ+QRER L F+ + +L
Sbjct: 239 DIEPEFY-GLVFCRTKVDVDTVSNRLIDRGYSAEALHGDLSQYQRERILRKFKTKRANIL 297
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARG+DI ++ +I+Y LP +PE++VHR GRTGRAGKEGTAI T + R +
Sbjct: 298 VATDVAARGIDISDLTHVINYSLPQNPESYVHRIGRTGRAGKEGTAITFVTPEEYRKLLF 357
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV-HPESVEFFTPTAQRLIEEKGTDAL 237
++R + P ++DV+ES ++ +N + E+ E + A ++E + + +
Sbjct: 358 IKRISKSDIKKKRIPKIKDVIESKKNRIKTEINNILESETYENYLELANEMLENRNANEV 417
Query: 238 AAALAQLS 245
AA+ + +
Sbjct: 418 LAAVLKYA 425
>gi|423480372|ref|ZP_17457062.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6X1-2]
gi|401148764|gb|EJQ56249.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6X1-2]
Length = 534
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + +++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>gi|15614947|ref|NP_243250.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
gi|10175004|dbj|BAB06103.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
Length = 539
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 144/259 (55%), Gaps = 27/259 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK-----RTIL 55
+LFSATMP +KKLSRKY+++P + + N+ E A I + +K R I
Sbjct: 182 LLFSATMPPAIKKLSRKYMNDPQTVSI--NRREVTAPSIDQFYYKVLERNKLDSLCRIID 239
Query: 56 SDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGK 114
S+ I + I+F +TK+ E++ AL + ++ LHGD++Q QR+ + FR
Sbjct: 240 SEQIDL------GILFCRTKKGVAELTEALQARGYIADGLHGDLTQSQRDAVMRKFRDSS 293
Query: 115 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 174
L+ATDVAARG+D+ NV +I+Y++P DPE++VHR GRTGRAG++G A+ + T + +
Sbjct: 294 IEFLIATDVAARGIDVGNVSHVINYDIPQDPESYVHRIGRTGRAGRKGLALTLVTPREMK 353
Query: 175 TVRSLERDVGCKFEFVSPPVVEDVLESSAE----QVVATL----NGVHPESVEFFTPTAQ 226
+RS+E+++ P +EDV+E E Q+ + N H F +
Sbjct: 354 HLRSIEQEIKMSIPSQEVPTIEDVVEKQKESWKKQIAHRIEKGSNQKH-----LFEQMTE 408
Query: 227 RLIEEKGTDALAAALAQLS 245
L+ E + + +AL QL+
Sbjct: 409 ELMAEYDSKEVISALLQLN 427
>gi|336312904|ref|ZP_08567849.1| cold-shock DEAD-box protein A [Shewanella sp. HN-41]
gi|335863516|gb|EGM68660.1| cold-shock DEAD-box protein A [Shewanella sp. HN-41]
Length = 631
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 141/256 (55%), Gaps = 14/256 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +K+++ ++L +P+++ + +Q E I+ + + +K L ++ V
Sbjct: 184 LFSATMPEQIKRVANQHLRSPVHVRIESSQ--TTVESIEQRFVQVSQHNKLEALVRVLEV 241
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +T+ E++ L + AS LHGD++Q RER + ++GK +L+A
Sbjct: 242 ENTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGKLDILIA 300
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P D E +VHR GRTGRAG+ G AIL TS + R +R++E
Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360
Query: 181 RDVGCKFEFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIE--EKGT 234
R + + P E V E EQ+ T+N ++F +L + E T
Sbjct: 361 RSTNSRISPMKIPSPETVAERRLSRLGEQLAETMNT----DLDFMKDAVAQLCQQLEVDT 416
Query: 235 DALAAALAQLSGFSRP 250
D LAAAL RP
Sbjct: 417 DLLAAALLHQVQQERP 432
>gi|334144539|ref|YP_004537695.1| DEAD/DEAH box helicase domain-containing protein
[Thioalkalimicrobium cyclicum ALM1]
gi|333965450|gb|AEG32216.1| DEAD/DEAH box helicase domain protein [Thioalkalimicrobium cyclicum
ALM1]
Length = 599
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 143/248 (57%), Gaps = 7/248 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP V K++ K+L+NP ++++ Q A I + K L+ ++
Sbjct: 187 LFSATMPKEVHKIASKHLNNP--VEVIIKQKTGTASTISQSYWLVSGLHKLDALTRILEA 244
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +TK E++ L + A+ AL+GDI+Q+ RER ++ ++GK +L+A
Sbjct: 245 TEFDG-MIIFVRTKTATIELAEKLEARGYAAAALNGDIAQNHRERIVDQLKKGKIDILIA 303
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDV ARGLD+ + +++Y++P D E++VHR GRTGRAG+ G AIL +RR ++ +E
Sbjct: 304 TDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFVAPRERRLLQQIE 363
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDAL-- 237
R K + ++ P +D+ + E+ A + + + E +EF+ + L + AL
Sbjct: 364 RATNKKIDMLTLPSTQDINDQRVEKFKARITDALEQEGLEFYQQMIEDLQQSSNVPALEI 423
Query: 238 AAALAQLS 245
AAALA+L+
Sbjct: 424 AAALAKLA 431
>gi|170077242|ref|YP_001733880.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
gi|12003026|gb|AAG43442.1|AF186181_2 ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
gi|169884911|gb|ACA98624.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
Length = 487
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 147/254 (57%), Gaps = 20/254 (7%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ--DEKLAEGIKLYAISTTATSKRTILSDL 58
+ FSATMP ++ L +L++P+NI + Q +++A+ ++Y I + + +L
Sbjct: 180 VCFSATMPPAIRDLVENFLNDPINITIKQPQVTPDRIAQ--EVYMIPRGWSKTKALLP-- 235
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
I A I+F +TKR A E++ L +++ HGD++Q+QRE+ + F+ GK +
Sbjct: 236 ILEMANPESAIIFVRTKRTASELTNELVEAGQSADEYHGDLNQNQREKLVRRFKDGKIKM 295
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
+VATD+AARGLD+ N+ +I+++LP++ E+++HR GRTGRAGK GTAI + S RR +R
Sbjct: 296 IVATDIAARGLDVENLSHVINFDLPDNTESYIHRIGRTGRAGKTGTAIALVEPSDRRLLR 355
Query: 178 SLERDVGCKFEFVSPPVVEDV-------LESSAEQVVATLNGVHPESVEFFTPTAQRLIE 230
+ER V + + P +V LE+ + +A E + F P +RL +
Sbjct: 356 QIERRVKQSLKVSTIPSRTEVEAQRVTRLETQVREALAG------ERMASFLPIVKRLGD 409
Query: 231 EKGTDALAAALAQL 244
E A+AAA+ Q+
Sbjct: 410 EYDPQAIAAAVLQM 423
>gi|116073020|ref|ZP_01470282.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
gi|116068325|gb|EAU74077.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
Length = 599
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 120/194 (61%), Gaps = 4/194 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMPS +++LS++YL P I + EK A I+ I+ + K L+ ++
Sbjct: 221 VLFSATMPSEIRRLSKRYLREPAEITI--KTKEKEARRIRQRCITLQNSHKLEALNRVLE 278
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTVLV 119
G I+F +TK VS +L + A L+GD+ Q+QRERT+ R+G +LV
Sbjct: 279 AVTGEG-VIIFARTKAITLNVSESLEAAGHDVAVLNGDVPQNQRERTVERLRKGTVNILV 337
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ + L+I+Y++P D E +VHR GRTGRAG+ G AIL T +RR V +L
Sbjct: 338 ATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFVTPRERRFVNNL 397
Query: 180 ERDVGCKFEFVSPP 193
ER VG + E ++ P
Sbjct: 398 ERAVGQEIEPMAIP 411
>gi|283798617|ref|ZP_06347770.1| ATP-dependent RNA helicase [Clostridium sp. M62/1]
gi|291073603|gb|EFE10967.1| DEAD/DEAH box helicase [Clostridium sp. M62/1]
gi|295115719|emb|CBL36566.1| Superfamily II DNA and RNA helicases [butyrate-producing bacterium
SM4/1]
Length = 553
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 129/211 (61%), Gaps = 8/211 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMP + ++++K+ +P + +V + + + Y +K ++ L+
Sbjct: 182 VMFSATMPQAIAEIAKKFQKDPEIVKVV--KKDLTVPKVTQYYYDVKPKNKLEVMCRLLD 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+YA ++VF TK+ DE+ LAL +E LHGD+ Q QR+R +NGFR+G+ +LV
Sbjct: 240 MYAPK-LSVVFCNTKKQVDELVLALQGRGYFAEGLHGDLKQVQRDRVMNGFRKGRTDILV 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ +V+ + +Y++P D E +VHR GRTGRAG+EG A + + +R +
Sbjct: 299 ATDVAARGIDVDDVEAVFNYDIPQDEEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRDI 358
Query: 180 ERDVGCKFEFVSPPV--VEDVLESSAEQVVA 208
+R CK + V P+ ++DV E A++++
Sbjct: 359 QR--YCKTKIVPQPIPSIDDVTEIKADKILC 387
>gi|451348181|ref|YP_007446812.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens IT-45]
gi|449851939|gb|AGF28931.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens IT-45]
Length = 494
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 143/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ P ++ + E I+ + + K L+ L+
Sbjct: 180 LLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVSNIQQFYLEVQERKKFDTLTRLLD 237
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLV
Sbjct: 238 IQSPE-LAIVFGRTKRRVDELTEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 296
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKNMLRAI 356
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ LE + V L + ++ F+ A L+E+ DA+
Sbjct: 357 EQTTKRKMDCMKEPTLDEALEGQQQVTVDRLRTAISENNLNFYMTAAAELLEDH--DAVT 414
Query: 239 AALAQLSGFSRPPSS 253
A + ++ P S
Sbjct: 415 VVAAAIKMATKEPDS 429
>gi|118470234|ref|YP_889292.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium smegmatis str. MC2 155]
gi|399989304|ref|YP_006569654.1| Cold-shock DEAD-box RNA helicase [Mycobacterium smegmatis str. MC2
155]
gi|441213695|ref|ZP_20975941.1| hypothetical protein D806_5114 [Mycobacterium smegmatis MKD8]
gi|118171521|gb|ABK72417.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium smegmatis str. MC2 155]
gi|399233866|gb|AFP41359.1| Cold-shock DEAD-box RNA helicase [Mycobacterium smegmatis str. MC2
155]
gi|440625659|gb|ELQ87505.1| hypothetical protein D806_5114 [Mycobacterium smegmatis MKD8]
Length = 581
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 122/198 (61%), Gaps = 4/198 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ ++K++ KYL +P+ + + AE I I K L+ ++ V
Sbjct: 200 LFSATMPAAIRKITTKYLHDPVEVTV--KAKTATAENISQRFIQVAGPRKMDALTRILEV 257
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+G IVF +TK+ +EV+ L + A+ A++GDI+Q QRERT++ + G +L+A
Sbjct: 258 -EEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIA 316
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +I+Y++P+D E++VHR GRTGRAG+ G A+L T +R ++S+E
Sbjct: 317 TDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIE 376
Query: 181 RDVGCKFEFVSPPVVEDV 198
+ K P VEDV
Sbjct: 377 KATRSKLIEAELPSVEDV 394
>gi|159901480|ref|YP_001547727.1| DEAD/DEAH box helicase [Herpetosiphon aurantiacus DSM 785]
gi|159894519|gb|ABX07599.1| DEAD/DEAH box helicase domain protein [Herpetosiphon aurantiacus
DSM 785]
Length = 584
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 141/253 (55%), Gaps = 12/253 (4%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL-AEGIKLYAISTTATSKRTILSDLIT 60
L+SATMP + +L+RKYL +P +V + E+L I+ A K +L+ ++
Sbjct: 180 LYSATMPDEIARLARKYLRSP---QMVTIEREQLTVPQIRQVYYEIGARDKFEVLTRILD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ I+F +TK DE+ L + +E LHGD+SQ R+R + FR+ + +LV
Sbjct: 237 LEMPT-SAIIFCRTKAMVDELGEKLLARGYGAELLHGDLSQAMRDRVMKRFREEQVEILV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI +V +I+Y++P DPE +VHR GRTGRAG+ G A+ + T +RR +R++
Sbjct: 296 ATDVAARGLDIEHVSHVINYDIPLDPEAYVHRIGRTGRAGRSGVAVTLVTPRERRQLRTI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV---HPES--VEFFTPTAQRLIEEKG- 233
ER G + + P + DV+ E L + H E +E + A+ L E+
Sbjct: 356 ERMTGAPIQRLRLPTIADVVARRREAFKDNLRELIEQHNEQGGLEQYLVLAEELAEQYSP 415
Query: 234 TDALAAALAQLSG 246
TD AAA + G
Sbjct: 416 TDLAAAAFKMMLG 428
>gi|402573181|ref|YP_006622524.1| DNA/RNA helicase [Desulfosporosinus meridiei DSM 13257]
gi|402254378|gb|AFQ44653.1| DNA/RNA helicase, superfamily II [Desulfosporosinus meridiei DSM
13257]
Length = 537
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 130/211 (61%), Gaps = 4/211 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP ++KL++ Y+++P ++ + ++DE I T + K L +I
Sbjct: 185 LLFSATMPPGIRKLAQTYMNSPRSVTV--SRDELTVPLIDQVFYETRESIKVDALGRIID 242
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ G+ I+F +TKR DE+ +AL + ++ALHGD+SQ QR+R + FR GK +L+
Sbjct: 243 M-EDIGQGIIFCRTKRGVDELVVALEARGYFADALHGDLSQQQRDRVMKRFRDGKTELLI 301
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI NV +I++++P DP ++VHR GRTGR G++G AI + + + R +R +
Sbjct: 302 ATDVAARGLDINNVTHVINFDIPQDPVSYVHRIGRTGRIGRKGQAITLISPKEYRQLRLI 361
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL 210
E + + + P + D+ E AE + L
Sbjct: 362 ENLIKTRIKRQELPSLADISERQAENIKMQL 392
>gi|295090645|emb|CBK76752.1| Superfamily II DNA and RNA helicases [Clostridium cf.
saccharolyticum K10]
Length = 553
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 129/211 (61%), Gaps = 8/211 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMP + ++++K+ +P + +V + + + Y +K ++ L+
Sbjct: 182 VMFSATMPQAIAEIAKKFQKDPEIVKVV--KKDLTVPKVTQYYYDVKPKNKLEVMCRLLD 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+YA ++VF TK+ DE+ LAL +E LHGD+ Q QR+R +NGFR+G+ +LV
Sbjct: 240 MYAPK-LSVVFCNTKKQVDELVLALQGRGYFAEGLHGDLKQVQRDRVMNGFRKGRTDILV 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ +V+ + +Y++P D E +VHR GRTGRAG+EG A + + +R +
Sbjct: 299 ATDVAARGIDVDDVEAVFNYDIPQDEEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRDI 358
Query: 180 ERDVGCKFEFVSPPV--VEDVLESSAEQVVA 208
+R CK + V P+ ++DV E A++++
Sbjct: 359 QR--YCKTKIVPQPIPSIDDVTEIKADKILC 387
>gi|407984605|ref|ZP_11165216.1| DEAD/DEAH box helicase family protein [Mycobacterium hassiacum DSM
44199]
gi|407373827|gb|EKF22832.1| DEAD/DEAH box helicase family protein [Mycobacterium hassiacum DSM
44199]
Length = 560
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 126/207 (60%), Gaps = 7/207 (3%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++K++RKYL +P+ + + AE I I K L+ ++ V
Sbjct: 192 LFSATMPPAIRKITRKYLHDPVEVTV--KAKTATAENISQRYIEVAGPRKLDALTRVLEV 249
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
IVF +TK+ +E++ L + A+ A++GDI+Q QRERT+ + G +L+A
Sbjct: 250 EPFEA-MIVFVRTKQATEELAERLRARGFAAAAINGDIAQAQRERTIAALKSGAIDILIA 308
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++PND E++VHR GRTGRAG+ GTA+L T +R ++++E
Sbjct: 309 TDVAARGLDVERISHVLNYDIPNDTESYVHRIGRTGRAGRSGTALLFVTPRERHLLKAIE 368
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVV 207
+ K P VEDV +A++VV
Sbjct: 369 KATRSKLVAAELPTVEDV---NAQRVV 392
>gi|407768377|ref|ZP_11115756.1| DEAD/DEAH box helicase [Thalassospira xiamenensis M-5 = DSM 17429]
gi|407289090|gb|EKF14567.1| DEAD/DEAH box helicase [Thalassospira xiamenensis M-5 = DSM 17429]
Length = 602
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 114/190 (60%), Gaps = 4/190 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMP VK L+ + L+NP+ ++ + E + + K ++L L+
Sbjct: 184 VMFSATMPPAVKHLTDRLLNNPVKVETAPQS--SVTERVTQRGMFVKRHDKTSLLVQLLK 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + +VFT+TK DADE+S L + ++A+HGD Q R++ L FR G+F VL+
Sbjct: 242 -RQESERVLVFTKTKADADELSFQLRDEGVDTDAIHGDKQQRIRQKILRNFRNGQFPVLI 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+P + +I+Y+LP DPE +VHR GRTGR EG AI R +R++
Sbjct: 301 ATDVAARGIDVPGITHVINYDLPTDPENYVHRIGRTGRGSAEGIAISFCEPRDVRHLRNI 360
Query: 180 ERDVGCKFEF 189
ER +G + E
Sbjct: 361 ERVIGQQVEI 370
>gi|270290190|ref|ZP_06196416.1| ATP-dependent RNA helicase DeaD [Pediococcus acidilactici 7_4]
gi|270281727|gb|EFA27559.1| ATP-dependent RNA helicase DeaD [Pediococcus acidilactici 7_4]
Length = 511
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 138/245 (56%), Gaps = 9/245 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +KK+ K++ +P + + E A+ + Y I + K +L+ +I
Sbjct: 178 LLFSATMPAPIKKIGVKFMTDPKQVTV--KSKELTADLVDQYYIRSKEFEKFDMLTRIID 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTVLV 119
V + +VF +TKR DEV+ L + + A +HGD++Q +R L+ FR G+ +LV
Sbjct: 236 VQSPK-LAVVFGRTKRRVDEVAKGLVARGYNAAGIHGDLTQQRRMNILHQFRDGQLDILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++P DPE++VHR GRTGRAG GT++ T+ + +R +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGAHGTSVTFVTNWEMDYLRDV 354
Query: 180 ERDVGCKFEFVSPPVVEDVL---ESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
ER + + PP E+ AEQ V L V V+ F A RL+E+
Sbjct: 355 ERLTKKRLLPLKPPTEEEAFIGRAVMAEQNVQEL--VKKTDVDKFGEQADRLLEQYDART 412
Query: 237 LAAAL 241
L AAL
Sbjct: 413 LVAAL 417
>gi|212558739|gb|ACJ31193.1| Helicase:DbpA, RNA-binding:DEAD/DEAH box helicase [Shewanella
piezotolerans WP3]
Length = 611
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 139/253 (54%), Gaps = 7/253 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +K+++ KYL P+++ + E I+ + + +K L ++ V
Sbjct: 185 LFSATMPEQIKRVANKYLSEPVHVKIAATT--TTVETIEQRFVQVSQHNKLEALVRVLEV 242
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +T+ E++ L + AS LHGD++Q RER ++ ++GK +++A
Sbjct: 243 EKTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIIIA 301
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P D E +VHR GRTGRAG+ G AIL T + R +R++E
Sbjct: 302 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIE 361
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV-HPESVEFFTPTAQRLIE--EKGTDAL 237
R + + P E V E ++ + V +S++F +L + E TD L
Sbjct: 362 RATKSRISPMDIPSPETVTERRLSRLGEQIGEVIAKDSLDFMKGAVAKLCQELEVDTDVL 421
Query: 238 AAALAQLSGFSRP 250
AAAL Q RP
Sbjct: 422 AAALLQQVQKDRP 434
>gi|375292864|ref|YP_005127403.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae INCA 402]
gi|371582535|gb|AEX46201.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae INCA 402]
Length = 676
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 125/201 (62%), Gaps = 4/201 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LSR Y+ +P I + + I ++ +K L+ ++ V
Sbjct: 246 LFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNTNITQRYLNVAHRNKLDALTRILEV 303
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 304 -TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 362
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 363 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 422
Query: 181 RDVGCKFEFVSPPVVEDVLES 201
R K + P V++V ES
Sbjct: 423 RATNAKLIEMDLPTVDEVNES 443
>gi|375361121|ref|YP_005129160.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|371567115|emb|CCF03965.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
Length = 511
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 143/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ P ++ + E I+ + + K L+ L+
Sbjct: 197 LLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVSNIQQFYLEVQERKKFDTLTRLLD 254
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLV
Sbjct: 255 IQSPE-LAIVFGRTKRRVDELTEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 313
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 314 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKNMLRAI 373
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ LE + V L + ++ F+ A L+E+ DA+
Sbjct: 374 EQTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTAISENNLNFYMTAAAELLEDH--DAVT 431
Query: 239 AALAQLSGFSRPPSS 253
A + ++ P S
Sbjct: 432 VVAAAIKMATKEPDS 446
>gi|402297853|ref|ZP_10817596.1| ATP-dependent RNA helicase [Bacillus alcalophilus ATCC 27647]
gi|401726922|gb|EJT00129.1| ATP-dependent RNA helicase [Bacillus alcalophilus ATCC 27647]
Length = 509
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 131/233 (56%), Gaps = 5/233 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP ++KL+++++ P I + E E I+ + I K L L+
Sbjct: 179 LLFSATMPKRIEKLAQQFMKEPQTIAVKAK--EVTMENIEQFYIELHEKQKFDALCRLVD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
++ IVF +TKR DE+S AL +E +HGD++Q +R+ L F+ G +LV
Sbjct: 237 IHTPE-LAIVFGRTKRRVDELSEALIKRGYRAEGIHGDLNQAKRDSVLRKFKNGLIEILV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +++LP DPE++VHR GRTGRAGK G A+ T S++ V ++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDLPQDPESYVHRIGRTGRAGKSGMAVTFATPSEKEHVAAI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEE 231
E+ K P E+ +E + V+A L + E F+ A+ L++E
Sbjct: 356 EKTSKKKMTKQPMPTFEEAMEGQQKLVLAQLREKLDQEDTNFYRAIAKDLLQE 408
>gi|311031130|ref|ZP_07709220.1| DEAD/DEAH box helicase domain protein [Bacillus sp. m3-13]
Length = 507
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 143/253 (56%), Gaps = 7/253 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ ++ ++ +++ P+N+ + E I+ + + K L+ L+
Sbjct: 179 LLFSATMPAPIRAIAERFMSEPVNVKVQAK--ELTISNIQQFYVEVPEKKKFDTLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + I+F +TKR DE+S AL ++E +HGD+SQ +R L F++G VLV
Sbjct: 237 IQSPE-LAIIFGRTKRRVDELSDALNVRGYSAEGIHGDLSQAKRMSVLRKFKEGSIDVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G AI + + + +
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAITFVSPREVSYLHHV 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + + L V +++ F+ A++L+EE DA+
Sbjct: 356 ERVTKRKMDKLKAPTLDEALEGQQKMSMEKLTQAVEAKNLGFYRNAAEQLLEEH--DAIT 413
Query: 239 AALAQLSGFSRPP 251
A L F++ P
Sbjct: 414 LVSAALKLFTKEP 426
>gi|85708371|ref|ZP_01039437.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
gi|85689905|gb|EAQ29908.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
Length = 484
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 123/208 (59%), Gaps = 12/208 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+ FSATMP +K+L Y +NP+ + + + AE I Y K+++L +++
Sbjct: 184 LFFSATMPKAIKELVSGYCNNPVQVSV--TPESTTAERIDQYLFMVQQDEKQSLLELILS 241
Query: 61 ----VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKF 115
V + + ++FT+TK AD V L+ I + A+HG+ SQ QR+R L+ FR+GK
Sbjct: 242 GRHKVPGEFERILIFTRTKHGADRVVKKLSRAGIPANAIHGNKSQPQRQRALDEFRRGKT 301
Query: 116 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT 175
+LVATDVAARG+DIP V +++YELPN PE +VHR GRT RAGK+G AI +R
Sbjct: 302 MILVATDVAARGIDIPGVSHVLNYELPNVPEQYVHRIGRTARAGKDGVAIAFCAEDERAY 361
Query: 176 VRSLERDVGCKFEFVSPP-----VVEDV 198
++ + + G + + ++ P VVE V
Sbjct: 362 LKDIRKTTGAELDRLNLPENFRAVVEGV 389
>gi|421732891|ref|ZP_16172007.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|407073252|gb|EKE46249.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 494
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 143/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ P ++ + E I+ + + K L+ L+
Sbjct: 180 LLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVSNIQQFYLEVQERKKFDTLTRLLD 237
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLV
Sbjct: 238 IQSPE-LAIVFGRTKRRVDELTEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 296
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKNMLRAI 356
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ LE + V L + ++ F+ A L+E+ DA+
Sbjct: 357 EQTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTAISENNLNFYMTAAAELLEDH--DAVT 414
Query: 239 AALAQLSGFSRPPSS 253
A + ++ P S
Sbjct: 415 VVAAAIKMATKEPDS 429
>gi|62390044|ref|YP_225446.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
13032]
gi|41325380|emb|CAF19860.1| Superfamily II DNA and RNA helicase [Corynebacterium glutamicum
ATCC 13032]
Length = 732
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 125/198 (63%), Gaps = 4/198 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS++YL+NP I + + + I ++ +K L+ ++ V
Sbjct: 281 LFSATMPNGIRRLSKQYLNNPAEITV--KSETRTNTNITQRFLNVAHRNKMDALTRILEV 338
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 339 -TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 397
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + ++++++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 398 TDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 457
Query: 181 RDVGCKFEFVSPPVVEDV 198
R + P V+ V
Sbjct: 458 RATNAPLHEMELPTVDQV 475
>gi|383820631|ref|ZP_09975884.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium phlei RIVM601174]
gi|383334548|gb|EID12986.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium phlei RIVM601174]
Length = 559
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 120/198 (60%), Gaps = 4/198 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +KK++ KYL +P+ + + AE I I K L+ ++ V
Sbjct: 192 LFSATMPAAIKKITTKYLHDPVEVTV--KSKTATAENISQRYIQVAGPRKMDALTRVLEV 249
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+G IVF +TK+ +EV+ L + A+ A++GDI Q QRERT+ + G +LVA
Sbjct: 250 -EQGDAMIVFVRTKQATEEVAERLRARGFAAAAINGDIPQAQRERTIAALKDGTIDILVA 308
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P+D E++VHR GRTGRAG+ G A+L T +R ++S+E
Sbjct: 309 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGQALLFVTPRERHLLKSIE 368
Query: 181 RDVGCKFEFVSPPVVEDV 198
+ K P VEDV
Sbjct: 369 KATRSKLIEAELPSVEDV 386
>gi|227825056|ref|ZP_03989888.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
gi|226905555|gb|EEH91473.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
Length = 532
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 137/244 (56%), Gaps = 11/244 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP + +S+KY+ P + + +++ A I Y T R + L
Sbjct: 184 MLFSATMPRPILSISKKYMRTPKVVAI--HKEIVTAPTIDQYYYET-----RDKVDGLCR 236
Query: 61 VY--AKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
+ K I+F +TK+ DE+ +AL T +E LHGD+SQ QR+R + FRQ + +
Sbjct: 237 ILDTTDDCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQTQRDRVMKKFRQDQVDI 296
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARG+DI N+ ++++++P DPE++VHR GRTGRAG G A+ T + R ++
Sbjct: 297 LVATDVAARGIDIDNITHVVNFDVPQDPESYVHRIGRTGRAGNTGVALTFITPREFRQLK 356
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQRLIEEKGTDA 236
+ER V K P +VLE EQ+++ + + ++ + P A+ L +
Sbjct: 357 LIERSVKTKIIRGQLPTDANVLEKQREQIISKMQSILEQNQYHDYLPIAEALENDYDIHD 416
Query: 237 LAAA 240
+AAA
Sbjct: 417 IAAA 420
>gi|404422771|ref|ZP_11004447.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium fortuitum subsp. fortuitum DSM 46621]
gi|403655804|gb|EJZ10637.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium fortuitum subsp. fortuitum DSM 46621]
Length = 576
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 93/252 (36%), Positives = 147/252 (58%), Gaps = 21/252 (8%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++K++ KYL +P+ + + AE I I K L+ ++ V
Sbjct: 192 LFSATMPPAIRKITTKYLHDPVEVTVKAKT--ATAENITQRFIQVAGARKLDALTRVLEV 249
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+G IVF +TK+ +EV+ L S A+ A++GDI+Q QRERT+ + G +L+A
Sbjct: 250 -EEGDAMIVFVRTKQATEEVAERLRSRGFAAAAINGDINQAQRERTITALKDGTIDILIA 308
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P+D E++VHR GRTGRAG+ G A+L T +R ++S+E
Sbjct: 309 TDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRSGHALLFVTPRERHLLKSIE 368
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVV----ATLNGVHPESVEFFTPTAQRLIE--EKGT 234
+ K P V+DV +A++V + + ++ + +E F +RLIE E+
Sbjct: 369 KHTRSKVIEAELPSVDDV---NAQRVAKFRDSITDSLNSDGLELF----RRLIEDYEREN 421
Query: 235 DA----LAAALA 242
D +AAALA
Sbjct: 422 DVPMADIAAALA 433
>gi|224373572|ref|YP_002607944.1| ATP-dependent RNA helicase DeaD [Nautilia profundicola AmH]
gi|223588451|gb|ACM92187.1| ATP-dependent RNA helicase DeaD [Nautilia profundicola AmH]
Length = 467
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 126/218 (57%), Gaps = 6/218 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP + L++ L +P I + + E E IK Y + L LI
Sbjct: 173 LLFSATMPKPILSLAKTILKDPEFIQI--TKKEVTNENIKEYFYVIDEHERNDALIRLID 230
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y + K IVF +TK+D D V+ L+ + ++ LHGD+ Q +RE + GF+ + +LV
Sbjct: 231 -YKQPNKAIVFCRTKKDVDTVADFLSGVGFDAKGLHGDMDQRKREEVIKGFKGNRIEILV 289
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ +V + +Y LP DPE++VHR GRTGRAGKEG AI + T + R + +
Sbjct: 290 ATDVAARGLDVNDVTHVFNYHLPLDPESYVHRIGRTGRAGKEGMAISLVTPHEFRALSKI 349
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 217
++ K E P ++DV + ++++ ++ + P +
Sbjct: 350 QK--ISKIELKEVPTLQDVKNTEIQKIMEKISSIEPNT 385
>gi|386757060|ref|YP_006230276.1| DEAD/DEAH box helicase [Bacillus sp. JS]
gi|384930342|gb|AFI27020.1| DEAD/DEAH box helicase [Bacillus sp. JS]
Length = 511
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 140/247 (56%), Gaps = 5/247 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ P ++ + E I+ + + K L+ L+
Sbjct: 197 LLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVSNIQQFYLEVQERKKFDTLTRLLD 254
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLV
Sbjct: 255 IQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 313
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 314 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 373
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ LE + V L + ++ F+ A L+E+ +
Sbjct: 374 EQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTAISENNLNFYMTAAAELLEDHDAVTVV 433
Query: 239 AALAQLS 245
AA ++S
Sbjct: 434 AAAIKMS 440
>gi|376248300|ref|YP_005140244.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC04]
gi|376251090|ref|YP_005137971.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC03]
gi|376256907|ref|YP_005144798.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae VA01]
gi|372112594|gb|AEX78653.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC03]
gi|372114868|gb|AEX80926.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC04]
gi|372119424|gb|AEX83158.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae VA01]
Length = 682
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 125/201 (62%), Gaps = 4/201 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LSR Y+ +P I + + I ++ +K L+ ++ V
Sbjct: 246 LFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNTNITQRYLNVAHRNKLDALTRILEV 303
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 304 -TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 362
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 363 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 422
Query: 181 RDVGCKFEFVSPPVVEDVLES 201
R K + P V++V ES
Sbjct: 423 RATNAKLIEMDLPTVDEVNES 443
>gi|376287519|ref|YP_005160085.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae BH8]
gi|371584853|gb|AEX48518.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae BH8]
Length = 680
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 125/201 (62%), Gaps = 4/201 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LSR Y+ +P I + + I ++ +K L+ ++ V
Sbjct: 246 LFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNTNITQRYLNVAHRNKLDALTRILEV 303
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 304 -TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 362
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 363 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 422
Query: 181 RDVGCKFEFVSPPVVEDVLES 201
R K + P V++V ES
Sbjct: 423 RATNAKLIEMDLPTVDEVNES 443
>gi|433649450|ref|YP_007294452.1| DNA/RNA helicase, superfamily II [Mycobacterium smegmatis JS623]
gi|433299227|gb|AGB25047.1| DNA/RNA helicase, superfamily II [Mycobacterium smegmatis JS623]
Length = 566
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 142/249 (57%), Gaps = 15/249 (6%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++K+++KYL +P+ + + + AE I I K L+ L+ V
Sbjct: 191 LFSATMPPGIRKITKKYLHDPVEVTV--KSKTQTAENISQRYIQVAGPRKMDALTRLLEV 248
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
IVF +TK+ +EV+ L + ++ A++GDI Q RERT+N + G +L+A
Sbjct: 249 EPFEA-MIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQAVRERTINSLKNGSLDILIA 307
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P+DPE++VHR GRTGRAG+ GTA+L T +R + S+E
Sbjct: 308 TDVAARGLDVERISHVLNYDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLNSIE 367
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIE--EKGTDA- 236
R K P V+DV E+ ++ + ++ F ++LIE E+ D
Sbjct: 368 RVTRQKLVESQLPSVDDVNAQRVEKFRDSITTALSAPGIDLF----RKLIEGYERDNDVP 423
Query: 237 ---LAAALA 242
+AAALA
Sbjct: 424 MADIAAALA 432
>gi|34557821|ref|NP_907636.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Wolinella
succinogenes DSM 1740]
gi|34483539|emb|CAE10536.1| ATP-DEPENDENT RNA HELICASE, DEAD-BOX FAMILY DEAD [Wolinella
succinogenes]
Length = 505
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 124/211 (58%), Gaps = 4/211 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K L++K L NP + + N+ + Y I+ + + LI
Sbjct: 190 LLFSATMPAPIKNLAQKILHNPKMVKVTTNETTNSDISQRYYIIN--EYEREDAIVRLID 247
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
A KTI+FT+ K++AD++S L + + ALHGD+ Q +R+ +N F+QG +LV
Sbjct: 248 SEAPS-KTIIFTRMKKEADDLSNRLIAKGYQAGALHGDMEQRERQAAVNAFKQGAIDILV 306
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI NV + +Y +P +PE++VHR GRTGRAGK+G AI + T + + +R +
Sbjct: 307 ATDVAARGLDISNVSHVFNYHIPLNPESYVHRIGRTGRAGKKGIAITLATPLEFKEIRRI 366
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL 210
E P + + L+ + +++ L
Sbjct: 367 SETTKATIELYEIPTIAETLKQTDSKLIQNL 397
>gi|145295298|ref|YP_001138119.1| hypothetical protein cgR_1238 [Corynebacterium glutamicum R]
gi|417970048|ref|ZP_12610983.1| hypothetical protein CgS9114_03408 [Corynebacterium glutamicum
S9114]
gi|140845218|dbj|BAF54217.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344045730|gb|EGV41400.1| hypothetical protein CgS9114_03408 [Corynebacterium glutamicum
S9114]
Length = 729
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 125/198 (63%), Gaps = 4/198 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS++YL+NP I + + + I ++ +K L+ ++ V
Sbjct: 281 LFSATMPNGIRRLSKQYLNNPAEITV--KSETRTNTNITQRFLNVAHRNKMDALTRILEV 338
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 339 -TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 397
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + ++++++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 398 TDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 457
Query: 181 RDVGCKFEFVSPPVVEDV 198
R + P V+ V
Sbjct: 458 RATNAPLHEMELPTVDQV 475
>gi|352684524|ref|YP_004896509.1| DEAD/DEAH box helicase [Acidaminococcus intestini RyC-MR95]
gi|350279179|gb|AEQ22369.1| DEAD/DEAH helicase [Acidaminococcus intestini RyC-MR95]
Length = 537
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 137/244 (56%), Gaps = 11/244 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP + +S+KY+ P + + +++ A I Y T R + L
Sbjct: 189 MLFSATMPRPILSISKKYMRTPKVVAI--HKEIVTAPTIDQYYYET-----RDKVDGLCR 241
Query: 61 VY--AKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
+ K I+F +TK+ DE+ +AL T +E LHGD+SQ QR+R + FRQ + +
Sbjct: 242 ILDTTDDCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQTQRDRVMKKFRQDQVDI 301
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARG+DI N+ ++++++P DPE++VHR GRTGRAG G A+ T + R ++
Sbjct: 302 LVATDVAARGIDIDNITHVVNFDVPQDPESYVHRIGRTGRAGNTGVALTFITPREFRQLK 361
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQRLIEEKGTDA 236
+ER V K P +VLE EQ+++ + + ++ + P A+ L +
Sbjct: 362 LIERSVKTKIIRGQLPTDANVLEKQREQIISKMQSILEQNQYHDYLPIAEALENDYDIHD 421
Query: 237 LAAA 240
+AAA
Sbjct: 422 IAAA 425
>gi|398307568|ref|ZP_10511154.1| ATP-dependent RNA helicase; cold shock [Bacillus vallismortis
DV1-F-3]
Length = 494
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 140/247 (56%), Gaps = 5/247 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ P ++ + E I+ + + K L+ L+
Sbjct: 180 LLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVSNIQQFYLEVQERKKFDTLTRLLD 237
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLV
Sbjct: 238 IQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 296
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 356
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ LE + V L + ++ F+ A L+E+ +
Sbjct: 357 EQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTAISENNLNFYMTAAAELLEDHDAVTVV 416
Query: 239 AALAQLS 245
AA ++S
Sbjct: 417 AAAIKMS 423
>gi|376293035|ref|YP_005164709.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC02]
gi|372110358|gb|AEX76418.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC02]
Length = 682
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 125/201 (62%), Gaps = 4/201 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LSR Y+ +P I + + I ++ +K L+ ++ V
Sbjct: 246 LFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNTNITQRYLNVAHRNKLDALTRILEV 303
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 304 -TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 362
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 363 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 422
Query: 181 RDVGCKFEFVSPPVVEDVLES 201
R K + P V++V ES
Sbjct: 423 RATNAKLIEMDLPTVDEVNES 443
>gi|376254085|ref|YP_005142544.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae PW8]
gi|372117169|gb|AEX69639.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae PW8]
Length = 705
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 125/201 (62%), Gaps = 4/201 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LSR Y+ +P I + + I ++ +K L+ ++ V
Sbjct: 246 LFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNTNITQRYLNVAHRNKLDALTRILEV 303
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 304 -TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 362
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 363 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 422
Query: 181 RDVGCKFEFVSPPVVEDVLES 201
R K + P V++V ES
Sbjct: 423 RATNAKLIEMDLPTVDEVNES 443
>gi|237841471|ref|XP_002370033.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
gi|211967697|gb|EEB02893.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
Length = 1258
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 145/278 (52%), Gaps = 49/278 (17%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE-----GIKLYAISTTATS----- 50
+LFSAT P WV+ ++ +L NP NID++ + + + ++L +++ +A++
Sbjct: 738 ILFSATTPGWVQDVAGTHLRNPTNIDILAERKLRTSTTVSHLAVRLPSLTPSASALPRSS 797
Query: 51 ------------KRTILSDLITVYAKGGK-TIVFTQTKRDADEVSLALT-SIIASEALHG 96
+L DLI ++ GK IVF TK DAD ++ A + + LHG
Sbjct: 798 SSGRGSSSAVAAAAPLLQDLILAESENGKQAIVFVPTKADADALANAADFERVGASVLHG 857
Query: 97 DISQHQRERTLNGFRQGK-------------------------FTVLVATDVAARGLDIP 131
DI Q R+ + GFR+GK + VL+ATDVAARG+D+
Sbjct: 858 DIGQETRQAVMEGFRRGKSPFGELLLSQACFALNASGLPLESRYKVLIATDVAARGIDVD 917
Query: 132 NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 191
+VDL++H +P D +T++HRSGRTGRAG+ G ++++ + + + LER G KF F+
Sbjct: 918 SVDLVLHCGVPTDADTYIHRSGRTGRAGRAGKSLVLVSPQETADLERLERACGFKFSFIH 977
Query: 192 PPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLI 229
P +L+S A L+ + P + FF P A+ ++
Sbjct: 978 LPSPNAILKSGAATASRLLDSISPSVLPFFRPAAEDVL 1015
>gi|19552380|ref|NP_600382.1| helicase [Corynebacterium glutamicum ATCC 13032]
gi|21323923|dbj|BAB98549.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
ATCC 13032]
gi|385143290|emb|CCH24329.1| putative helicase [Corynebacterium glutamicum K051]
Length = 732
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 125/198 (63%), Gaps = 4/198 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS++YL+NP I + + + I ++ +K L+ ++ V
Sbjct: 281 LFSATMPNGIRRLSKQYLNNPAEITV--KSETRTNTNITQRFLNVAHRNKMDALTRILEV 338
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 339 -TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 397
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + ++++++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 398 TDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 457
Query: 181 RDVGCKFEFVSPPVVEDV 198
R + P V+ V
Sbjct: 458 RATNAPLHEMELPTVDQV 475
>gi|389850156|ref|YP_006352391.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 258]
gi|388247462|gb|AFK16453.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 258]
Length = 660
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 129/205 (62%), Gaps = 4/205 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS++Y+ +P I + + + I ++ +K L+ ++ V
Sbjct: 245 LFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNTNITQRFLNVAHRNKLDALTRILEV 302
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 303 -TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 361
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 362 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 421
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQ 205
R + + P V++V ES E+
Sbjct: 422 RATNAELIEMDLPTVDEVNESRKEK 446
>gi|38233613|ref|NP_939380.1| DEAD/DEAH box helicase [Corynebacterium diphtheriae NCTC 13129]
gi|376242613|ref|YP_005133465.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae CDCE 8392]
gi|38199873|emb|CAE49539.1| DEAD-box helicase [Corynebacterium diphtheriae]
gi|372105855|gb|AEX71917.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae CDCE 8392]
Length = 680
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 125/201 (62%), Gaps = 4/201 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LSR Y+ +P I + + I ++ +K L+ ++ V
Sbjct: 246 LFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNTNITQRYLNVAHRNKLDALTRILEV 303
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 304 -TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 362
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 363 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 422
Query: 181 RDVGCKFEFVSPPVVEDVLES 201
R K + P V++V ES
Sbjct: 423 RATNAKLIEMDLPTVDEVNES 443
>gi|221504525|gb|EEE30198.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
Length = 1279
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 145/278 (52%), Gaps = 49/278 (17%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE-----GIKLYAISTTATS----- 50
+LFSAT P WV+ ++ +L NP NID++ + + + ++L +++ +A++
Sbjct: 741 ILFSATTPGWVQDVAGTHLRNPTNIDILAERKLRTSTTVSHLAVRLPSLTPSASALPRSS 800
Query: 51 ------------KRTILSDLITVYAKGGK-TIVFTQTKRDADEVSLALT-SIIASEALHG 96
+L DLI ++ GK IVF TK DAD ++ A + + LHG
Sbjct: 801 SSGRGSSSAVAAAAPLLQDLILAESENGKQAIVFVPTKADADALANAADFERVGASVLHG 860
Query: 97 DISQHQRERTLNGFRQGK-------------------------FTVLVATDVAARGLDIP 131
DI Q R+ + GFR+GK + VL+ATDVAARG+D+
Sbjct: 861 DIGQETRQAVMEGFRRGKSPFGELLLSQACFALNASSLPLESRYKVLIATDVAARGIDVD 920
Query: 132 NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 191
+VDL++H +P D +T++HRSGRTGRAG+ G ++++ + + + LER G KF F+
Sbjct: 921 SVDLVLHCGVPTDADTYIHRSGRTGRAGRAGKSLVLVSPQETADLERLERACGFKFSFIH 980
Query: 192 PPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLI 229
P +L+S A L+ + P + FF P A+ ++
Sbjct: 981 LPSPNAILKSGAATASRLLDSISPSVLPFFRPAAEDVL 1018
>gi|376284519|ref|YP_005157729.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae 31A]
gi|371578034|gb|AEX41702.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae 31A]
Length = 680
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 125/201 (62%), Gaps = 4/201 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LSR Y+ +P I + + I ++ +K L+ ++ V
Sbjct: 246 LFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNTNITQRYLNVAHRNKLDALTRILEV 303
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 304 -TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 362
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 363 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 422
Query: 181 RDVGCKFEFVSPPVVEDVLES 201
R K + P V++V ES
Sbjct: 423 RATNAKLIEMDLPTVDEVNES 443
>gi|392400358|ref|YP_006436958.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis Cp162]
gi|390531436|gb|AFM07165.1| DEAD-box helicase [Corynebacterium pseudotuberculosis Cp162]
Length = 660
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 129/205 (62%), Gaps = 4/205 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS++Y+ +P I + + + I ++ +K L+ ++ V
Sbjct: 245 LFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNTNITQRFLNVAHRNKLDALTRILEV 302
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 303 -TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 361
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 362 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 421
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQ 205
R + + P V++V ES E+
Sbjct: 422 RATNAELIEMDLPTVDEVNESRKEK 446
>gi|419860593|ref|ZP_14383234.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|387982987|gb|EIK56486.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 667
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 125/201 (62%), Gaps = 4/201 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LSR Y+ +P I + + I ++ +K L+ ++ V
Sbjct: 246 LFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNTNITQRYLNVAHRNKLDALTRILEV 303
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 304 -TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 362
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 363 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 422
Query: 181 RDVGCKFEFVSPPVVEDVLES 201
R K + P V++V ES
Sbjct: 423 RATNAKLIEMDLPTVDEVNES 443
>gi|385263594|ref|ZP_10041681.1| DEAD/DEAH box helicase [Bacillus sp. 5B6]
gi|385148090|gb|EIF12027.1| DEAD/DEAH box helicase [Bacillus sp. 5B6]
Length = 517
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 143/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ P ++ + E I+ + + K L+ L+
Sbjct: 203 LLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVSNIQQFYLEVQERKKFDTLTRLLD 260
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLV
Sbjct: 261 IQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 319
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 320 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 379
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ LE + V L + ++ F+ A L+E+ DA+
Sbjct: 380 EQTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTAISENNLNFYMTAAAELLEDH--DAVT 437
Query: 239 AALAQLSGFSRPPSS 253
A + ++ P S
Sbjct: 438 VVAAAIKMATKEPDS 452
>gi|386740147|ref|YP_006213327.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 31]
gi|384476841|gb|AFH90637.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 31]
Length = 660
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 129/205 (62%), Gaps = 4/205 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS++Y+ +P I + + + I ++ +K L+ ++ V
Sbjct: 245 LFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNTNITQRFLNVAHRNKLDALTRILEV 302
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 303 -TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 361
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 362 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 421
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQ 205
R + + P V++V ES E+
Sbjct: 422 RATNAELIEMDLPTVDEVNESRKEK 446
>gi|383313989|ref|YP_005374844.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis P54B96]
gi|380869490|gb|AFF21964.1| DEAD-box helicase [Corynebacterium pseudotuberculosis P54B96]
Length = 638
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 129/205 (62%), Gaps = 4/205 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS++Y+ +P I + + + I ++ +K L+ ++ V
Sbjct: 245 LFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNTNITQRFLNVAHRNKLDALTRILEV 302
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 303 -TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 361
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 362 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 421
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQ 205
R + + P V++V ES E+
Sbjct: 422 RATNAELIEMDLPTVDEVNESRKEK 446
>gi|384264053|ref|YP_005419760.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|452854495|ref|YP_007496178.1| ATP-dependent RNA helicase; cold shock [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|380497406|emb|CCG48444.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|452078755|emb|CCP20506.1| ATP-dependent RNA helicase; cold shock [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 494
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 143/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ P ++ + E I+ + + K L+ L+
Sbjct: 180 LLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVSNIQQFYLEVQERKKFDTLTRLLD 237
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLV
Sbjct: 238 IQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 296
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 356
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ LE + V L + ++ F+ A L+E+ DA+
Sbjct: 357 EQTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTAISENNLNFYMTAAAELLEDH--DAVT 414
Query: 239 AALAQLSGFSRPPSS 253
A + ++ P S
Sbjct: 415 VVAAAIKMATKEPDS 429
>gi|379715095|ref|YP_005303432.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 316]
gi|387140417|ref|YP_005696395.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 1/06-A]
gi|355392208|gb|AER68873.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 1/06-A]
gi|377653801|gb|AFB72150.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 316]
Length = 660
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 129/205 (62%), Gaps = 4/205 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS++Y+ +P I + + + I ++ +K L+ ++ V
Sbjct: 245 LFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNTNITQRFLNVAHRNKLDALTRILEV 302
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 303 -TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 361
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 362 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 421
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQ 205
R + + P V++V ES E+
Sbjct: 422 RATNAELIEMDLPTVDEVNESRKEK 446
>gi|350264711|ref|YP_004876018.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349597598|gb|AEP85386.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 494
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 140/247 (56%), Gaps = 5/247 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ P ++ + E I+ + + K L+ L+
Sbjct: 180 LLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVSNIQQFYLEVQERKKFDTLTRLLD 237
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLV
Sbjct: 238 IQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 296
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 356
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ LE + V L + ++ F+ A L+E+ +
Sbjct: 357 EQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTAISENNLNFYMTAAAELLEDHDAVTVV 416
Query: 239 AALAQLS 245
AA ++S
Sbjct: 417 AAAIKMS 423
>gi|387136343|ref|YP_005692323.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 42/02-A]
gi|348606788|gb|AEP70061.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 42/02-A]
Length = 659
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 129/205 (62%), Gaps = 4/205 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS++Y+ +P I + + + I ++ +K L+ ++ V
Sbjct: 245 LFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNTNITQRFLNVAHRNKLDALTRILEV 302
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 303 -TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 361
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 362 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 421
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQ 205
R + + P V++V ES E+
Sbjct: 422 RATNAELIEMDLPTVDEVNESRKEK 446
>gi|384506502|ref|YP_005683171.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis C231]
gi|302205951|gb|ADL10293.1| DEAD-box helicase [Corynebacterium pseudotuberculosis C231]
Length = 650
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 129/205 (62%), Gaps = 4/205 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS++Y+ +P I + + + I ++ +K L+ ++ V
Sbjct: 245 LFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNTNITQRFLNVAHRNKLDALTRILEV 302
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 303 -TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 361
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 362 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 421
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQ 205
R + + P V++V ES E+
Sbjct: 422 RATNAELIEMDLPTVDEVNESRKEK 446
>gi|300858229|ref|YP_003783212.1| hypothetical protein cpfrc_00811 [Corynebacterium
pseudotuberculosis FRC41]
gi|375288396|ref|YP_005122937.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 3/99-5]
gi|384504410|ref|YP_005681080.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 1002]
gi|384508590|ref|YP_005685258.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis I19]
gi|384510681|ref|YP_005690259.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis PAT10]
gi|300685683|gb|ADK28605.1| hypothetical protein cpfrc_00811 [Corynebacterium
pseudotuberculosis FRC41]
gi|302330505|gb|ADL20699.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 1002]
gi|308276186|gb|ADO26085.1| DEAD-box helicase [Corynebacterium pseudotuberculosis I19]
gi|341824620|gb|AEK92141.1| DEAD-box helicase [Corynebacterium pseudotuberculosis PAT10]
gi|371575685|gb|AEX39288.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 3/99-5]
Length = 660
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 129/205 (62%), Gaps = 4/205 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS++Y+ +P I + + + I ++ +K L+ ++ V
Sbjct: 245 LFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNTNITQRFLNVAHRNKLDALTRILEV 302
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 303 -TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 361
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 362 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 421
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQ 205
R + + P V++V ES E+
Sbjct: 422 RATNAELIEMDLPTVDEVNESRKEK 446
>gi|387896965|ref|YP_006327261.1| ATP-dependent RNA helicase [Bacillus amyloliquefaciens Y2]
gi|387171075|gb|AFJ60536.1| ATP-dependent RNA helicase [Bacillus amyloliquefaciens Y2]
Length = 517
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 143/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ P ++ + E I+ + + K L+ L+
Sbjct: 203 LLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVSNIQQFYLEVQERKKFDTLTRLLD 260
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLV
Sbjct: 261 IQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 319
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 320 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 379
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ LE + V L + ++ F+ A L+E+ DA+
Sbjct: 380 EQTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTAISENNLNFYMTAAAELLEDH--DAVT 437
Query: 239 AALAQLSGFSRPPSS 253
A + ++ P S
Sbjct: 438 VVAAAIKMATKEPDS 452
>gi|376290134|ref|YP_005162381.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae C7 (beta)]
gi|372103530|gb|AEX67127.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae C7 (beta)]
Length = 682
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 125/201 (62%), Gaps = 4/201 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LSR Y+ +P I + + I ++ +K L+ ++ V
Sbjct: 246 LFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNTNITQRYLNVAHRNKLDALTRILEV 303
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 304 -TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 362
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 363 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 422
Query: 181 RDVGCKFEFVSPPVVEDVLES 201
R K + P V++V ES
Sbjct: 423 RATNAKLIEMDLPTVDEVNES 443
>gi|424736339|ref|ZP_18164799.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZB2]
gi|422949942|gb|EKU44315.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZB2]
Length = 507
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 139/249 (55%), Gaps = 8/249 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP ++K++ ++ +P + + E + I Y + + K +LS L+
Sbjct: 179 LLFSATMPPAIRKIAETFMRDPEIVKI--KAKELTVDNIDQYFVKSAEREKFDVLSRLLN 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI--IASEALHGDISQHQRERTLNGFRQGKFTVL 118
V+ + I+F +TKR DE++ AL SI +E +HGD+SQ +R L F++ K +L
Sbjct: 237 VH-QPELAIIFGRTKRRVDELAQAL-SIRGYLAEGIHGDLSQAKRISVLRQFKENKIDIL 294
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T + +R
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLRI 354
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESV--EFFTPTAQRLIEEKGTDA 236
+E + + PP ++ LE V TL G+ + ++ T A+ L D
Sbjct: 355 VEETTKKRMTPLRPPTTDEALEGQQRLAVETLEGLIANNNLGDYRTFAAELLENHDAVDV 414
Query: 237 LAAALAQLS 245
+AAAL L+
Sbjct: 415 VAAALRSLT 423
>gi|418245162|ref|ZP_12871569.1| putative helicase [Corynebacterium glutamicum ATCC 14067]
gi|354510570|gb|EHE83492.1| putative helicase [Corynebacterium glutamicum ATCC 14067]
Length = 732
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 125/198 (63%), Gaps = 4/198 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS++YL+NP I + + + I ++ +K L+ ++ V
Sbjct: 281 LFSATMPNGIRRLSKQYLNNPAEITV--KSETRTNTNITQRFLNVAHRNKMDALTRILEV 338
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 339 -TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 397
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + ++++++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 398 TDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 457
Query: 181 RDVGCKFEFVSPPVVEDV 198
R + P V+ V
Sbjct: 458 RATNAPLHEMELPTVDQV 475
>gi|384135153|ref|YP_005517867.1| DEAD/DEAH box helicase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339289238|gb|AEJ43348.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 526
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 126/210 (60%), Gaps = 14/210 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK-----RTIL 55
MLFSAT P+ VK+L+ +Y+ +P +I + N+ E I +K R +
Sbjct: 178 MLFSATFPNEVKRLALRYMRDPQHITV--NRGEVTVPQIDQVCYKVLERNKLDSLCRIVD 235
Query: 56 SDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGK 114
S+ I + I+F +TKR D++ AL + ++ LHGD+SQ QR+R + FR+ +
Sbjct: 236 SEDIQL------GIIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNE 289
Query: 115 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 174
+LVATDVAARGLD+ +V +I+Y++P DPE++VHR GRTGRAGK G AI + T + +
Sbjct: 290 IELLVATDVAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYK 349
Query: 175 TVRSLERDVGCKFEFVSPPVVEDVLESSAE 204
++ +ER++ K P +EDV E AE
Sbjct: 350 LLKQIEREIKQKITVREVPSLEDVAERQAE 379
>gi|441523228|ref|ZP_21004858.1| ATP-dependent RNA helicase DeaD [Gordonia sihwensis NBRC 108236]
gi|441457193|dbj|GAC62819.1| ATP-dependent RNA helicase DeaD [Gordonia sihwensis NBRC 108236]
Length = 596
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 123/198 (62%), Gaps = 4/198 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ + +L+RKYL+NP + + A+ I + + K L+ ++ V
Sbjct: 197 LFSATMPAAIGRLARKYLNNPQEVTV--KNKTATAQNITQKYLQVSHQRKLDALTRVLEV 254
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G IVF +TK +E++ L + +++ A++GD+ Q QRERT+N + G +LVA
Sbjct: 255 EPFDG-MIVFVRTKSATEELAEKLRARGLSAMAINGDMVQAQRERTINQLKDGSLDILVA 313
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P+D E++VHR GRTGRAG+ GTA+L + +R +RS+E
Sbjct: 314 TDVAARGLDVDRISHVVNYDIPHDVESYVHRIGRTGRAGRSGTALLFVSPRERHLLRSIE 373
Query: 181 RDVGCKFEFVSPPVVEDV 198
R E + P V+DV
Sbjct: 374 RHTRQDLEEIDLPSVDDV 391
>gi|299538292|ref|ZP_07051577.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
gi|298726494|gb|EFI67084.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
Length = 507
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 139/249 (55%), Gaps = 8/249 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP ++K++ ++ +P + + E + I Y + + K +LS L+
Sbjct: 179 LLFSATMPPAIRKIAETFMRDPEIVKI--KAKELTVDNIDQYFVKSAEREKFDVLSRLLN 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI--IASEALHGDISQHQRERTLNGFRQGKFTVL 118
V+ + I+F +TKR DE++ AL SI +E +HGD+SQ +R L F++ K +L
Sbjct: 237 VH-QPELAIIFGRTKRRVDELAQAL-SIRGYLAEGIHGDLSQAKRISVLRQFKENKIDIL 294
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T + +R
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLRI 354
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESV--EFFTPTAQRLIEEKGTDA 236
+E + + PP ++ LE V TL G+ + ++ T A+ L D
Sbjct: 355 VEETTKKRMTPLRPPTTDEALEGQQRLAVETLEGLIANNNLGDYRTFAAELLENHDAVDV 414
Query: 237 LAAALAQLS 245
+AAAL L+
Sbjct: 415 VAAALRSLT 423
>gi|85373802|ref|YP_457864.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
gi|84786885|gb|ABC63067.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
Length = 492
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 122/215 (56%), Gaps = 12/215 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI- 59
+ FSATMP +++L KY NP+ + + AE I Y K+ ++ ++
Sbjct: 186 LFFSATMPKQIQELVGKYCRNPVKVSV--TPAATTAERIDQYLFMVQQDEKQALIEMILK 243
Query: 60 ---TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKF 115
V K + +VFT+TK AD V L I S A+HG+ SQ QR+R L+ F++ K
Sbjct: 244 GRHAVPGKQERILVFTRTKHGADRVVKKLRQAGIESNAIHGNKSQPQRQRALDEFKRAKT 303
Query: 116 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT 175
+L+ATDVAARG+DIP V +I+YELPN PE +VHR GRT RAGK+G AI +R
Sbjct: 304 PILIATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGKDGVAIAFCAEDERAY 363
Query: 176 VRSLERDVGCKFEFVSPP-----VVEDVLESSAEQ 205
++ ++++ +F+ + P VVE V + EQ
Sbjct: 364 LKDIQKNTDAEFDRLPLPENFRAVVEGVGPTKREQ 398
>gi|258511452|ref|YP_003184886.1| DEAD/DEAH box helicase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257478178|gb|ACV58497.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 541
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 144/252 (57%), Gaps = 15/252 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK-----RTIL 55
MLFSAT P+ VK+L+ +Y+ +P +I + N+ E I +K R +
Sbjct: 193 MLFSATFPNEVKRLALRYMRDPQHITV--NRGEVTVPQIDQVCYKVLERNKLDSLCRIVD 250
Query: 56 SDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGK 114
S+ I + I+F +TKR D++ AL + ++ LHGD+SQ QR+R + FR+ +
Sbjct: 251 SEDIQL------GIIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNE 304
Query: 115 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 174
+LVATDVAARGLD+ +V +I+Y++P DPE++VHR GRTGRAGK G AI + T + +
Sbjct: 305 IELLVATDVAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYK 364
Query: 175 TVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKG 233
++ +ER++ K P +EDV E AE + + V E + + L++E
Sbjct: 365 LLKQIEREIKQKITVREVPSLEDVAERQAEMWRSKIVDVIREGGLAPYRAILSGLVDEHD 424
Query: 234 TDALAAALAQLS 245
+A+AL +L+
Sbjct: 425 PIDIASALLKLA 436
>gi|385807275|ref|YP_005843672.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 267]
gi|383804668|gb|AFH51747.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 267]
Length = 662
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 129/205 (62%), Gaps = 4/205 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS++Y+ +P I + + + I ++ +K L+ ++ V
Sbjct: 245 LFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNTNITQRFLNVAHRNKLDALTRILEV 302
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 303 -TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 361
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 362 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 421
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQ 205
R + + P V++V ES E+
Sbjct: 422 RATNAELIEMDLPTVDEVNESRKEK 446
>gi|429503967|ref|YP_007185151.1| hypothetical protein B938_02225 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|429485557|gb|AFZ89481.1| hypothetical protein B938_02225 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 494
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 143/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ P ++ + E I+ + + K L+ L+
Sbjct: 180 LLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVSNIQQFYLEVQERKKFDTLTRLLD 237
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLV
Sbjct: 238 IQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 296
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 356
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ LE + V L + ++ F+ A L+E+ DA+
Sbjct: 357 EQTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTAISENNLNFYMTAAAELLEDH--DAVT 414
Query: 239 AALAQLSGFSRPPSS 253
A + ++ P S
Sbjct: 415 VVAAAIKMATKEPDS 429
>gi|221482484|gb|EEE20832.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
Length = 1295
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 145/278 (52%), Gaps = 49/278 (17%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE-----GIKLYAISTTATS----- 50
+LFSAT P WV+ ++ +L NP NID++ + + + ++L +++ +A++
Sbjct: 757 ILFSATTPGWVQDVAGTHLRNPTNIDILAERKLRTSTTVSHLAVRLPSLTPSASALPRSS 816
Query: 51 ------------KRTILSDLITVYAKGGK-TIVFTQTKRDADEVSLALT-SIIASEALHG 96
+L DLI ++ GK IVF TK DAD ++ A + + LHG
Sbjct: 817 SSGRGSSSAVAAAAPLLQDLILAESENGKQAIVFVPTKADADALANAADFERVGASVLHG 876
Query: 97 DISQHQRERTLNGFRQGK-------------------------FTVLVATDVAARGLDIP 131
DI Q R+ + GFR+GK + VL+ATDVAARG+D+
Sbjct: 877 DIGQETRQAVMEGFRRGKSPFGELLLSQACFALNASGLPLESRYKVLIATDVAARGIDVD 936
Query: 132 NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 191
+VDL++H +P D +T++HRSGRTGRAG+ G ++++ + + + LER G KF F+
Sbjct: 937 SVDLVLHCGVPTDADTYIHRSGRTGRAGRAGKSLVLVSPQETADLERLERACGFKFSFIH 996
Query: 192 PPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLI 229
P +L+S A L+ + P + FF P A+ ++
Sbjct: 997 LPSPNAILKSGAATASRLLDSISPSVLPFFRPAAEDVL 1034
>gi|218290125|ref|ZP_03494287.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius LAA1]
gi|218239834|gb|EED07023.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius LAA1]
Length = 465
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 144/252 (57%), Gaps = 15/252 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK-----RTIL 55
MLFSAT P+ VK+L+ +Y+ +P +I + N+ E I +K R +
Sbjct: 194 MLFSATFPNEVKRLALRYMRDPQHITV--NRGEVTVPQIDQVCYKVLERNKLDSLCRIVD 251
Query: 56 SDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGK 114
S+ I + I+F +TKR D++ AL + ++ LHGD+SQ QR+R + FR+ +
Sbjct: 252 SEDIQL------GIIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNE 305
Query: 115 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 174
+LVATDVAARGLD+ +V +I+Y++P DPE++VHR GRTGRAGK G AI + T + +
Sbjct: 306 IELLVATDVAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYK 365
Query: 175 TVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKG 233
++ +ER++ K P +EDV E AE + + V E + + L++E
Sbjct: 366 LLKQIEREIKQKITVREVPSLEDVAERQAEMWRSKIVDVIREGGLAPYRAILSGLVDEHD 425
Query: 234 TDALAAALAQLS 245
+A+AL +L+
Sbjct: 426 PIDIASALLKLA 437
>gi|154684961|ref|YP_001420122.1| hypothetical protein RBAM_004920 [Bacillus amyloliquefaciens FZB42]
gi|154350812|gb|ABS72891.1| YdbR [Bacillus amyloliquefaciens FZB42]
Length = 511
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 143/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ P ++ + E I+ + + K L+ L+
Sbjct: 197 LLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVSNIQQFYLEVQERKKFDTLTRLLD 254
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLV
Sbjct: 255 IQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 313
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 314 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 373
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ LE + V L + ++ F+ A L+E+ DA+
Sbjct: 374 EQTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTAISENNLNFYMTAAAELLEDH--DAVT 431
Query: 239 AALAQLSGFSRPPSS 253
A + ++ P S
Sbjct: 432 VVAAAIKMATKEPDS 446
>gi|387138413|ref|YP_005694392.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis CIP
52.97]
gi|349734891|gb|AEQ06369.1| DEAD-box helicase [Corynebacterium pseudotuberculosis CIP 52.97]
Length = 829
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 129/205 (62%), Gaps = 4/205 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS++Y+ +P I + + + I ++ +K L+ ++ V
Sbjct: 245 LFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNTNITQRFLNVAHRNKLDALTRILEV 302
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 303 -TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 361
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 362 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 421
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQ 205
R + + P V++V ES E+
Sbjct: 422 RATNAELIEMDLPTVDEVNESRKEK 446
>gi|126659493|ref|ZP_01730626.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110]
gi|126619227|gb|EAZ89963.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110]
Length = 478
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 137/247 (55%), Gaps = 10/247 (4%)
Query: 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY 62
FSATMP ++ L ++L +P+ + + Q LY + SKR L ++ +
Sbjct: 182 FSATMPREIRDLVNQFLKSPVTVSVERTQAAPTRIDQHLYMVPR-GWSKRKALQPILEI- 239
Query: 63 AKGGKTIVFTQTKRDADEVSLALTSIIAS-EALHGDISQHQRERTLNGFRQGKFTVLVAT 121
I+F +TK+ A +++ L I S + HG++SQ QRER ++ FR GK ++VAT
Sbjct: 240 EDPESAIIFVRTKQTASDLTSKLQEIGHSVDEYHGNLSQSQRERLVHRFRDGKIKLVVAT 299
Query: 122 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 181
D+AARGLD+ N+ +I+Y+LP++ ET++HR GRTGRAGK GTAI + RR VR +E+
Sbjct: 300 DIAARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLIEPIDRRMVRQIEK 359
Query: 182 DVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDAL 237
+ K E P V LE Q+ +L G E + F P + L +E A+
Sbjct: 360 RLRQKLETCKLPSRSQVEAKRLEKLQNQIKESLAG---ERMASFLPLVRELSDEYDPQAI 416
Query: 238 AAALAQL 244
AAA Q+
Sbjct: 417 AAAALQM 423
>gi|312881457|ref|ZP_07741251.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309370879|gb|EFP98337.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 620
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 143/254 (56%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K + ++L NP+ ID+ G + ++ K +S L+
Sbjct: 184 VLFSATMPPMLKNIVERFLRNPITIDVAGKN--HTVDKVEQQFWVVKGVEKDEAMSRLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA-- 236
ER E + P + V + E++ A L +++E FT ++L + DA
Sbjct: 361 ERVTKSTMEEIQLPHRDKVAAARLEKLGAELETEKEHKALEKFTELVEKLQDTLELDAAT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAILLKRQQGKRP 434
>gi|357055243|ref|ZP_09116317.1| hypothetical protein HMPREF9467_03289 [Clostridium clostridioforme
2_1_49FAA]
gi|355383199|gb|EHG30285.1| hypothetical protein HMPREF9467_03289 [Clostridium clostridioforme
2_1_49FAA]
Length = 569
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 142/249 (57%), Gaps = 7/249 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMP + +++RK+ +P+ + ++ + E + Y +K ++S L+
Sbjct: 182 LMFSATMPQAIAEIARKFQKDPVTVRVI--KKELTVPKVTQYYYEVKPKNKVEVMSRLLD 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+YA +IVF TKR D++ L +E LHGD+ Q QR+R ++ FR G+ +LV
Sbjct: 240 MYAPK-LSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQVQRDRVMDSFRNGRTDILV 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ +V+ + +Y++P D E +VHR GRTGRAG+EG A + + +R +
Sbjct: 299 ATDVAARGIDVGDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVMGKEVYKLRDI 358
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES--VEFFTPTAQRLIEEKGTDA- 236
+R K + P + D+ E E+++ + V ++ + ++L+EE T
Sbjct: 359 QRYCKTKIIPQAIPSLNDITEIKVEKILDQVQEVLNDTDLTKMVNIIEKKLMEEDYTSMD 418
Query: 237 LAAALAQLS 245
LAAAL ++S
Sbjct: 419 LAAALLKMS 427
>gi|67920440|ref|ZP_00513960.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Crocosphaera watsonii WH 8501]
gi|416377119|ref|ZP_11683540.1| Cold-shock DEAD-box protein A [Crocosphaera watsonii WH 0003]
gi|67857924|gb|EAM53163.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Crocosphaera watsonii WH 8501]
gi|357266298|gb|EHJ14951.1| Cold-shock DEAD-box protein A [Crocosphaera watsonii WH 0003]
Length = 480
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 136/247 (55%), Gaps = 10/247 (4%)
Query: 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY 62
FSATMP ++ L ++L +P+ + + Q LY + SKR L ++ +
Sbjct: 182 FSATMPREIRDLVNQFLKSPVTVSVERKQAAPTHIDQHLYYVPR-GWSKRKALQPILEM- 239
Query: 63 AKGGKTIVFTQTKRDADEVSLALTSIIAS-EALHGDISQHQRERTLNGFRQGKFTVLVAT 121
I+F +TK+ A E++ L I S + HG++SQ QRER + FR GK ++VAT
Sbjct: 240 EDPESAIIFVRTKQTASELTTRLQEIGHSVDEYHGNLSQSQRERLVYRFRDGKIKLVVAT 299
Query: 122 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 181
D+AARGLD+ N+ +I+Y+LP++ ET++HR GRTGRAGK GTAI + RR VR +ER
Sbjct: 300 DIAARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLIEPVDRRMVRQIER 359
Query: 182 DVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDAL 237
+ K E P V +E ++ +L G E + F P + L +E A+
Sbjct: 360 KLRQKLETCKIPSRSQVEAKRIEKLQNEIKESLAG---ERMASFLPLVRELSDEYDPQAI 416
Query: 238 AAALAQL 244
AAA Q+
Sbjct: 417 AAAALQM 423
>gi|89072916|ref|ZP_01159473.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
gi|89051438|gb|EAR56893.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
Length = 654
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 143/254 (56%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP VK++ ++L NP ID+ G + + ++ K +S L+
Sbjct: 210 VLFSATMPPIVKEIVDRFLRNPARIDVAG--ENRTVSKVEQQFWVVKGVEKDEAMSRLLE 267
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+IVF +T++D + ++ L+S + ALHGDI Q RERT++ ++G +LV
Sbjct: 268 TEDTDA-SIVFVRTRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILV 326
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG+ G AIL+ ++Q R +R++
Sbjct: 327 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRAGKAILLVRTNQIRMLRTI 386
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDA-- 236
ER + E + P+ + V S ++ L + SVE F ++L E DA
Sbjct: 387 ERVTKSRMEEIQLPLRDLVAASRLNRLGEELAAQKEQTSVEAFVELVEKLQESIDVDAAT 446
Query: 237 LAAALAQLSGFSRP 250
LAA L Q +RP
Sbjct: 447 LAAMLLQRQQGNRP 460
>gi|440781688|ref|ZP_20959916.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
pasteurianum DSM 525]
gi|440220406|gb|ELP59613.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
pasteurianum DSM 525]
Length = 522
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 164/311 (52%), Gaps = 14/311 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSATMP +KKLS YL + +I ++ + I Y ++ L ++
Sbjct: 181 LLFSATMPKPIKKLSENYLKKDVKHIQIL--KKSLTVSKIDQYYYEVHNNTRLESLCRIL 238
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ ++ I+F +TK+ DE+ ++S E +HGD+ Q R TLN F+ G T L
Sbjct: 239 DI-SEPESAIIFCRTKKSVDELVSTMSSKGYNIEGMHGDMKQKNRLSTLNKFKNGNLTFL 297
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
ATDVAARG+D+ N+ +I+YELP D E++VHR GRTGRA + GTAI + T ++
Sbjct: 298 AATDVAARGIDVENITHVINYELPQDTESYVHRIGRTGRANRSGTAISLITRKDFTKLKQ 357
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDAL 237
+E+D+ K P +++++ ++ +V+ + N + E + F P + L +E + +
Sbjct: 358 IEKDIKSKITKQKIPTMQEIINIKSKNIVSKVSNILSTEEYKKFEPIIENLGKEYSLNQI 417
Query: 238 AAALAQLSGFSRPPSSR---SLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPT 294
AAAL + + + S+ L N E V L + S R ++ +S++ F+
Sbjct: 418 AAALLK-NALDKEISTEYNDDLFNQENS-VRLFM---SIGRRDGINIKSLLEFIDTTSTV 472
Query: 295 AADEIGKIHII 305
++ IG I I+
Sbjct: 473 NSNYIGSIDIL 483
>gi|429729511|ref|ZP_19264170.1| cold-shock DEAD-box protein A [Corynebacterium durum F0235]
gi|429149535|gb|EKX92513.1| cold-shock DEAD-box protein A [Corynebacterium durum F0235]
Length = 677
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 129/205 (62%), Gaps = 4/205 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMPS ++++S++YL +P I + + + I ++ +K L+ ++ V
Sbjct: 248 LFSATMPSAIRRMSKQYLKDPREITV--KSETRTNTNITQKFLNVAHRNKLDALTRILEV 305
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +E++ L + ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 306 -TEFAAMIMFVRTKHETEELAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 364
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P+D E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 365 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 424
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQ 205
R + P V++V ES E+
Sbjct: 425 RATNATLVEMELPTVDEVNESRKEK 449
>gi|341615128|ref|ZP_08701997.1| DNA and RNA helicase [Citromicrobium sp. JLT1363]
Length = 460
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 121/208 (58%), Gaps = 12/208 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+ FSATMP +K+L +Y NP+ + + + AE I+ + K+++L +++
Sbjct: 184 LFFSATMPKQIKELVSQYCRNPVQVSV--TPESTTAERIEQFLFMVQQDEKQSLLELILS 241
Query: 61 ----VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKF 115
+ K + +VF +TK D V L + IA+ A+HG+ SQ QRER L+ F++ K
Sbjct: 242 GRHEIPGKIERVLVFARTKHGCDRVVKKLAQVNIAANAIHGNKSQPQRERALDEFKRAKT 301
Query: 116 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT 175
VLVATDVAARG+DIP V +I+YELPN PE +VHR GRT RAG +G AI +R+
Sbjct: 302 PVLVATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGADGIAIAFCAEDERQY 361
Query: 176 VRSLERDVGCKFEFVSPP-----VVEDV 198
++ + + +FE + P VVE V
Sbjct: 362 LKDIRKTTDAEFERLPLPENFRAVVEGV 389
>gi|52078994|ref|YP_077785.1| ATP-dependent RNA helicase YdbR [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|404487867|ref|YP_006711973.1| DEAD/DEAH box helicase [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|423680898|ref|ZP_17655737.1| ATP-dependent RNA helicase YdbR [Bacillus licheniformis WX-02]
gi|81691189|sp|Q65N62.1|CSHA_BACLD RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|52002205|gb|AAU22147.1| probable ATP-dependent RNA helicase YdbR [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|52346868|gb|AAU39502.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|383442004|gb|EID49713.1| ATP-dependent RNA helicase YdbR [Bacillus licheniformis WX-02]
Length = 487
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 144/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ NP ++ + E I+ + + K L+ L+
Sbjct: 180 LLFSATMPAPIKRIAERFMTNPEHVKVKAK--EMTVSNIQQFYLEVHERKKFDTLTRLLD 237
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL +E +HGD++Q +R L F+QG VLV
Sbjct: 238 IQSPE-LAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLV 296
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAI 356
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ +E + V + + E ++ F+ A L+E+ D++
Sbjct: 357 EQTTKRKMDRMKAPTLDEAIEGQQQVTVDRIRTIIEENNLNFYMTAAAELLEDH--DSVT 414
Query: 239 AALAQLSGFSRPPSS 253
A + ++ P +
Sbjct: 415 VVAAAIKMMTKEPDN 429
>gi|345860075|ref|ZP_08812402.1| DEAD-box ATP-dependent RNA helicase cshA domain protein
[Desulfosporosinus sp. OT]
gi|344326819|gb|EGW38270.1| DEAD-box ATP-dependent RNA helicase cshA domain protein
[Desulfosporosinus sp. OT]
Length = 536
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 124/207 (59%), Gaps = 4/207 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP ++KL++ Y++NP + + ++DE I + K L +I
Sbjct: 185 MLFSATMPPAIRKLAQTYMNNPRAVTV--SRDELTVPLIDQVFYEARESIKVDALCRIID 242
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ G+ I+F +TKR DE+ AL + ++ LHGD+SQ QR+R + FR GK +LV
Sbjct: 243 I-EDIGQGIIFCRTKRGVDELVAALEARGYFADGLHGDLSQQQRDRVMKRFRDGKSELLV 301
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI NV +I++++P DP ++VHR GRTGR G++G AI + + + R +R +
Sbjct: 302 ATDVAARGLDINNVTHVINFDIPQDPVSYVHRIGRTGRVGRKGQAITLISPKEYRQLRLI 361
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQV 206
E + + P + D+ E AE +
Sbjct: 362 ENLIKTRIRRQELPSLADISERQAENL 388
>gi|160937140|ref|ZP_02084503.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
BAA-613]
gi|158440041|gb|EDP17789.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
BAA-613]
Length = 569
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 142/249 (57%), Gaps = 7/249 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMP + +++RK+ +P+ + ++ + E + Y +K ++S L+
Sbjct: 182 LMFSATMPQAIAEIARKFQKDPVTVRVI--KKELTVPKVTQYYYEVKPKNKVEVMSRLLD 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+YA +IVF TKR D++ L +E LHGD+ Q QR+R ++ FR G+ +LV
Sbjct: 240 MYAPK-LSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQVQRDRVMDSFRNGRTDILV 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ +V+ + +Y++P D E +VHR GRTGRAG+EG A + + +R +
Sbjct: 299 ATDVAARGIDVGDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVMGKEVYKLRDI 358
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES--VEFFTPTAQRLIEEKGTDA- 236
+R K + P + D+ E E+++ + V ++ + ++L+EE T
Sbjct: 359 QRYCKTKIIPQAIPSLNDITEIKVEKILDQVQEVLNDTDLTKMVNIIEKKLMEEDYTSMD 418
Query: 237 LAAALAQLS 245
LAAAL ++S
Sbjct: 419 LAAALLKMS 427
>gi|451943907|ref|YP_007464543.1| hypothetical protein A605_05875 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
gi|451903294|gb|AGF72181.1| hypothetical protein A605_05875 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
Length = 697
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 128/201 (63%), Gaps = 4/201 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ ++++S++YL++P I + + + I + +K ++ ++ V
Sbjct: 262 LFSATMPNGIRRISKQYLNDPREITV--KSETRTNTNITQRYLHVAHRNKLDAITRILEV 319
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ IVF +TK + +E++ L + ++ A++GDI+Q+QRERT++ + G+ +LVA
Sbjct: 320 -TEFDAMIVFVRTKHETEEIAEKLRARGFSAAAINGDIAQNQRERTVDQLKNGRLDILVA 378
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P+D E++VHR GRTGRAG+ G AIL T +RR + S+E
Sbjct: 379 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLNSIE 438
Query: 181 RDVGCKFEFVSPPVVEDVLES 201
R + + P VEDV E+
Sbjct: 439 RATNAPLDEMELPSVEDVNEA 459
>gi|172039349|ref|YP_001805850.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142]
gi|354552384|ref|ZP_08971692.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. ATCC 51472]
gi|171700803|gb|ACB53784.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142]
gi|353555706|gb|EHC25094.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. ATCC 51472]
Length = 480
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 138/247 (55%), Gaps = 10/247 (4%)
Query: 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY 62
FSATMP ++ L ++L +P+ + + Q LY + SKR L ++ +
Sbjct: 182 FSATMPREIRDLVNQFLKSPVTVSVERTQAAPTRIDQHLYMVPR-GWSKRKALQPILEI- 239
Query: 63 AKGGKTIVFTQTKRDADEVSLALTSIIAS-EALHGDISQHQRERTLNGFRQGKFTVLVAT 121
I+F +TK+ A +++ L I S + HG++SQ QRER ++ FR+GK ++VAT
Sbjct: 240 EDPESAIIFVRTKQTASDLTSKLQEIGHSVDEYHGNLSQSQRERLVHRFREGKIKLVVAT 299
Query: 122 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 181
D+AARGLD+ N+ +I+Y+LP++ ET++HR GRTGRAGK GTAI + RR VR +E+
Sbjct: 300 DIAARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLVEPIDRRMVRQIEK 359
Query: 182 DVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDAL 237
+ K E P V LE ++ +L G E + F P + L +E A+
Sbjct: 360 RLRQKLETCKLPSRSQVEAKRLEKLQNEIKESLAG---ERMASFLPLVRELSDEYDPQAI 416
Query: 238 AAALAQL 244
AAA Q+
Sbjct: 417 AAAALQM 423
>gi|335040306|ref|ZP_08533437.1| DEAD/DEAH box helicase domain protein [Caldalkalibacillus thermarum
TA2.A1]
gi|334179782|gb|EGL82416.1| DEAD/DEAH box helicase domain protein [Caldalkalibacillus thermarum
TA2.A1]
Length = 457
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 138/246 (56%), Gaps = 5/246 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K+L+ +++ NP + + Q I+ Y + K IL L+
Sbjct: 179 LLFSATMPEPIKELALRFMQNPAEVKIKVKQVT--VPLIEQYYLEVQEKQKFDILCRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL +E +HGD+SQ +R++ +N FR G +LV
Sbjct: 237 LESPE-LAIVFGRTKRRVDELSEALKRRGYLAEGIHGDLSQARRDQVINLFRTGSIDILV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE +VHR GRTGRAG+ G AI + ++++
Sbjct: 296 ATDVAARGLDIQGVTHVCNFDIPQDPENYVHRIGRTGRAGQTGKAITFVVPRELDHLKTI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALA 238
E + K E P + +VL+ + + L V E ++ F AQ L+EE+ + L
Sbjct: 356 EHLIRRKLEKKRIPTISEVLKGRQQAAMERLLRVAEEGDLQVFQRMAQALLEEQDSVTLV 415
Query: 239 AALAQL 244
AA +L
Sbjct: 416 AAALKL 421
>gi|453364213|dbj|GAC80062.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia malaquae NBRC
108250]
Length = 574
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 122/198 (61%), Gaps = 4/198 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ + +L+RKYL+NP + + A I + + K L+ ++ V
Sbjct: 192 LFSATMPASIGRLARKYLNNPQEVTV--KAKTATASNITQKYLQVSHQRKLDALTRVLEV 249
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +TK +E++ L S +++ A++GD+ Q QRERT+N + G +LVA
Sbjct: 250 ETFDG-MIIFARTKSATEELAEKLRSRGLSAMAINGDMVQAQRERTINQLKDGSLDILVA 308
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P+D E++VHR GRTGRAG+ GTA+L + +R +RS+E
Sbjct: 309 TDVAARGLDVDRISHVVNYDIPHDVESYVHRIGRTGRAGRSGTALLFVSPRERHLLRSIE 368
Query: 181 RDVGCKFEFVSPPVVEDV 198
R E + P V+DV
Sbjct: 369 RHTRQSIEEIDLPSVDDV 386
>gi|78184980|ref|YP_377415.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
gi|78169274|gb|ABB26371.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
Length = 624
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 122/196 (62%), Gaps = 8/196 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDL-VGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSATMP +++LS++YL++P + + +QD KL I+ AI+ + K L ++
Sbjct: 249 VLFSATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKL---IRQRAITVPMSHKLEALQRVL 305
Query: 60 TVYAKGGK-TIVFTQTKRDADEVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTV 117
A GG+ I+F +TK V+ L + A L+GD+ Q+QRERT+ R G V
Sbjct: 306 D--ACGGEGVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDV 363
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARGLD+ + L+I+Y++P D E +VHR GRTGRAG+ G A+L T +RR +R
Sbjct: 364 LVATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRERRFIR 423
Query: 178 SLERDVGCKFEFVSPP 193
+LER G E + P
Sbjct: 424 NLERATGQPIEMMEVP 439
>gi|319648702|ref|ZP_08002913.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2]
gi|317389121|gb|EFV69937.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2]
Length = 516
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 141/246 (57%), Gaps = 5/246 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ NP ++ + E I+ + + K L+ L+
Sbjct: 160 LLFSATMPAPIKRIAERFMTNPEHVKVKAK--EMTVSNIQQFYLEVHERKKFDTLTRLLD 217
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL +E +HGD++Q +R L F+QG VLV
Sbjct: 218 IQSPE-LAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLV 276
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 277 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAI 336
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ +E + V + + E ++ F+ A L+E+ + +
Sbjct: 337 EQTTKRKMDRMKAPTLDEAIEGQQQVTVDRIRTIIEENNLNFYMTAAAELLEDHDSVTVV 396
Query: 239 AALAQL 244
AA ++
Sbjct: 397 AAAIKM 402
>gi|189913047|ref|YP_001964936.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167777723|gb|ABZ96023.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
Length = 529
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 123/206 (59%), Gaps = 6/206 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI-KLYAISTTATSKRTILSDLI 59
+LFSATMP +KKL+ KY +P ++ + EK ++ I ++Y I A +R I I
Sbjct: 186 LLFSATMPEPIKKLASKYQTHPAHVKIAAT--EKSSKNIEQVYYIIDEA--EREIAVVRI 241
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
Y K I+FT+TK++AD++ L+ EALHGD++Q QRE+ L G+ +L
Sbjct: 242 LDYENPFKAIIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVKIL 301
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLD+ ++ L+I+Y LP D E++ HR GRTGRAGK G A+ + T+ + R +
Sbjct: 302 VATDVAARGLDVKDLSLVINYHLPFDSESYTHRIGRTGRAGKSGKAVTLVTTRESRALLR 361
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAE 204
L+ G + P ++V S E
Sbjct: 362 LKGTSGTNLTIAALPTKKEVHLSREE 387
>gi|326795184|ref|YP_004313004.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
gi|326545948|gb|ADZ91168.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
MMB-1]
Length = 619
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 143/256 (55%), Gaps = 13/256 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++K++ K+L+NP + ++ K + +S K L+ ++ +
Sbjct: 187 LFSATMPPVIRKVANKHLNNPKEVKILTKTSTATTISQKYWQVS--GIHKLDALTRILEM 244
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +TK E++ LT+ A EAL+GDISQ+ RERT++ ++G+ +LVA
Sbjct: 245 NEHDG-MIIFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVDRIKKGQIDILVA 303
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDV ARGLD+ V +++Y++P D E++VHR GRTGRAG+ GTAIL +RR ++ +E
Sbjct: 304 TDVVARGLDVDRVSHVVNYDIPYDTESYVHRIGRTGRAGRSGTAILFVGHRERRMLQQIE 363
Query: 181 RDVGCKFEFVSPPVVEDVLESSA----EQVVATLNGVHPESVEFFTPTAQRLIEEKGTD- 235
R E + P D+ E +++ T++ E ++FF A +E D
Sbjct: 364 RATRQAIERMQLPTASDINEQRVARFKQRITDTIDN---EDLDFFIELAASYQKENDVDP 420
Query: 236 -ALAAALAQLSGFSRP 250
L AALA ++ P
Sbjct: 421 VKLGAALAHMAQGKTP 436
>gi|350564547|ref|ZP_08933364.1| DEAD/DEAH box helicase domain protein [Thioalkalimicrobium
aerophilum AL3]
gi|349777566|gb|EGZ31929.1| DEAD/DEAH box helicase domain protein [Thioalkalimicrobium
aerophilum AL3]
Length = 609
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 142/247 (57%), Gaps = 7/247 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP V K++ ++L+NP ++++ Q A I + K L+ ++
Sbjct: 187 LFSATMPKEVHKIASRHLNNP--VEVIIKQKTGTASTITQSYWLVSGLHKLDALTRILEA 244
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +TK E++ L + A+ AL+GDI+Q+ RER ++ ++GK +L+A
Sbjct: 245 TEFDG-MIIFVRTKTATIELAEKLEARGYAAAALNGDIAQNHRERIVDQLKKGKIDILIA 303
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDV ARGLD+ + +++Y++P D E++VHR GRTGRAG+ G AIL +RR ++ +E
Sbjct: 304 TDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFVAPRERRLLQQIE 363
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDAL-- 237
R K + ++ P +D+ + E+ A + + + E +EF+ + L + AL
Sbjct: 364 RATNKKIDMLTLPSTQDINDQRVEKFKARITDALEQEGLEFYQQMIEDLQQASNVPALEI 423
Query: 238 AAALAQL 244
AAALA+L
Sbjct: 424 AAALAKL 430
>gi|384049181|ref|YP_005497198.1| DEAD/DEAH box helicase [Bacillus megaterium WSH-002]
gi|345446872|gb|AEN91889.1| DEAD/DEAH box helicase domain protein [Bacillus megaterium WSH-002]
Length = 484
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 144/254 (56%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +++++ K+++ P + E I Y + K IL+ L+
Sbjct: 160 LLFSATMPTPIRRIAEKFMNEPKV--VKVKAKEVTMPNITQYYLEVQEKRKFDILTRLLD 217
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + I+F +TKR DE+S AL +++ +HGD++Q +R L F++G VLV
Sbjct: 218 MQSPE-LAIIFGRTKRRVDELSEALNMRGYSAQGIHGDLTQSKRLSVLRQFKEGSIDVLV 276
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T + + ++
Sbjct: 277 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGAAMTFVTPRETGQLHNI 336
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
ER K E ++PP +++ +E L V ++ ++ A+ L+EE + +L
Sbjct: 337 ERTTKRKMERMTPPTLDEAMEGQQRIAADKLTESVTQGNLSYYKQLAEELLEEHDSVSLV 396
Query: 239 AALAQLSGFSRPPS 252
AA +L F++ P+
Sbjct: 397 AAAIKL--FTKEPN 408
>gi|402298055|ref|ZP_10817779.1| ATP-dependent RNA helicase [Bacillus alcalophilus ATCC 27647]
gi|401726699|gb|EJS99915.1| ATP-dependent RNA helicase [Bacillus alcalophilus ATCC 27647]
Length = 534
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 150/273 (54%), Gaps = 25/273 (9%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK-----RTIL 55
+LFSATMP +KKLSRKY+ P + + N+ E A I +K R I
Sbjct: 178 LLFSATMPPAIKKLSRKYMTTPKMVTI--NKGEVTAPLINQIYFKVLERNKIDSLCRIID 235
Query: 56 SDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGK 114
S+ I + I+F +TK+ E++ AL + ++ LHGD++Q QR+ + FR
Sbjct: 236 SEEIDL------GILFCRTKKGVAELTEALQARGYLADGLHGDLTQSQRDSVMKKFRDSS 289
Query: 115 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 174
L+ATDVAARG+D+ NV +I+Y++P DPE++VHR GRTGRAG++G A+ + T + +
Sbjct: 290 IEFLIATDVAARGIDVDNVTHVINYDIPQDPESYVHRIGRTGRAGRQGLALTLVTPREMK 349
Query: 175 TVRSLERDVGCKFEFVSPPVVEDVLE----SSAEQVVATLNGVHPESVEFFTPTAQRLIE 230
+RS+E ++ P +E+V+E S ++V T+ E + F+P + ++E
Sbjct: 350 HLRSIEHEIKMSIPSQDVPTIEEVVEKQHDSWKKRVTDTIEARGKE-FDLFSPLVKEILE 408
Query: 231 EKGTDALAAALAQLSGFSRPPSSRSLINHEQGW 263
+ + +AL +++ + P N E G+
Sbjct: 409 VHSPEDVVSALLKMNFSTETP------NEEAGY 435
>gi|338708626|ref|YP_004662827.1| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
subsp. pomaceae ATCC 29192]
gi|336295430|gb|AEI38537.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
Length = 448
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 123/202 (60%), Gaps = 10/202 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+ FSATMP +++LS ++L +P+ + + AE ++ + + K+ +L+ IT
Sbjct: 188 LFFSATMPKSIQELSSQFLSDPVTVSVAPQSST--AERVEQFGVFVNQQEKQALLT--IT 243
Query: 61 VYAKGG--KTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
+ + G + +VFT+TK AD V L + I + A+HG+ SQ QRER LN FR G+ +
Sbjct: 244 LKSTPGLDRALVFTRTKHGADRVVRHLEAAGIPAAAIHGNKSQPQRERALNAFRNGRLKI 303
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATD+AARG+D+P V + ++ELPN E +VHR GRT RAG++G AI + +R +R
Sbjct: 304 LVATDIAARGIDVPGVSHVFNFELPNVAEQYVHRIGRTARAGRDGQAISFVANDERTYLR 363
Query: 178 SLERDVGCKFEFVSPP---VVE 196
S+ER K + + P VVE
Sbjct: 364 SIERLTRVKLQILPLPENFVVE 385
>gi|384162855|ref|YP_005544234.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
amyloliquefaciens LL3]
gi|328910410|gb|AEB62006.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
amyloliquefaciens LL3]
Length = 480
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 143/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ P ++ + E I+ + + K L+ L+
Sbjct: 166 LLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVSNIQQFYLEVQERKKFDTLTRLLD 223
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLV
Sbjct: 224 IQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 282
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 283 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 342
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ LE + V L + ++ F+ A L+E+ DA+
Sbjct: 343 EQTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTTISENNLNFYMTAAAELLEDH--DAVT 400
Query: 239 AALAQLSGFSRPPSS 253
A + ++ P S
Sbjct: 401 VVAAAIKMATKEPDS 415
>gi|408793651|ref|ZP_11205257.1| DEAD/DEAH box helicase [Leptospira meyeri serovar Hardjo str. Went
5]
gi|408462155|gb|EKJ85884.1| DEAD/DEAH box helicase [Leptospira meyeri serovar Hardjo str. Went
5]
Length = 528
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 128/224 (57%), Gaps = 10/224 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI-KLYAISTTATSKRTILSDLI 59
+LFSATMP +KKL+ KY +P ++ + EK ++ I ++Y + A +R I I
Sbjct: 186 LLFSATMPEPIKKLASKYQTHPAHVKIAAT--EKSSKNIEQVYYVIDEA--EREIAVVRI 241
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
Y K I+FT+TK++AD++ L EALHGD++Q QRE+ L G+ +L
Sbjct: 242 LDYENPYKAIIFTKTKKEADDLKATLGFKGYPVEALHGDLNQKQREQVLKSLHDGRVKIL 301
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLD+ ++ L+I+Y LP D E++ HR GRTGRAGK G A+ + T+ + R +
Sbjct: 302 VATDVAARGLDVKDLSLVINYHLPFDSESYTHRIGRTGRAGKSGKAVTLVTTRESRALLR 361
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAE----QVVATLNGVHPESV 218
L+ G + P ++VL E VV T V E V
Sbjct: 362 LKGTSGTNLTIAALPTKKEVLARREEDFLNNVVETEIHVDAEEV 405
>gi|27366603|ref|NP_762130.1| cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6]
gi|37676317|ref|NP_936713.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
gi|320158491|ref|YP_004190869.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O]
gi|27358169|gb|AAO07120.1| Cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6]
gi|37200858|dbj|BAC96683.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
gi|319933803|gb|ADV88666.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O]
Length = 641
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 149/256 (58%), Gaps = 11/256 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQD--EKLAEGIKLYAISTTATSKRTILSDL 58
+LFSATMP +K + ++L +P+ +D+ G +K+A+ + + + K +S L
Sbjct: 184 VLFSATMPPMLKNIVERFLRDPVTVDVAGKNHTVDKVAQ--QFWVVK--GVEKDEAMSRL 239
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
+ + +IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +
Sbjct: 240 LET-EETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDI 298
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R
Sbjct: 299 LVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRQGKAILLVRTNQIRMLR 358
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA 236
++ER E + P+ + V + +++ A L + ++++ F ++L E D+
Sbjct: 359 TIERVTKSSMEEIQLPLRDKVAAARLDKLAAELQADIEHKALDKFAELIEKLEERLEIDS 418
Query: 237 --LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 419 SVLAAILLKRQQGKRP 434
>gi|89099486|ref|ZP_01172362.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
gi|89085872|gb|EAR64997.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
Length = 479
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 141/248 (56%), Gaps = 6/248 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +++++ +++ +P I + E I+ + + +K +L+ L+
Sbjct: 160 LLFSATMPAPIQRMAERFMRDPQIIRVKAK--EMTVPLIEQFYVEVQERTKFDVLTRLLN 217
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + I+F +TKR DE++ AL +E +HGD+SQ +R L F++G VLV
Sbjct: 218 IQSPE-LAIIFGRTKRRVDELAEALNLRGFLAEGIHGDLSQAKRMSVLRKFKEGSIDVLV 276
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGKEG A+ T ++ + +
Sbjct: 277 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKEGMAMTFITPREKSYLAVV 336
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEK-GTDAL 237
ER K + PP + + LE + V + + ++E + A L+E+ +D +
Sbjct: 337 ERTTKSKMGKMVPPTLAEALEGQQKAAVDKISQAISANNLENYKEAADELLEQHDASDVV 396
Query: 238 AAALAQLS 245
AA L L+
Sbjct: 397 AAVLKLLT 404
>gi|294497056|ref|YP_003560756.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
gi|294346993|gb|ADE67322.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
Length = 503
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 144/254 (56%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +++++ K+++ P + E I Y + K IL+ L+
Sbjct: 179 LLFSATMPTPIRRIAEKFMNEPKV--VKVKAKEVTMPNITQYYLEVQEKRKFDILTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + I+F +TKR DE+S AL +++ +HGD++Q +R L F++G VLV
Sbjct: 237 MQSPE-LAIIFGRTKRRVDELSEALNMRGYSAQGIHGDLTQSKRLSVLRQFKEGSIDVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T + + ++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGAAMTFVTPRETGQLHNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
ER K E ++PP +++ +E L V ++ ++ A+ L+EE + +L
Sbjct: 356 ERTTKRKMERLTPPTLDEAMEGQQRIAADKLTESVTQGNLSYYKQLAEELLEEHDSVSLV 415
Query: 239 AALAQLSGFSRPPS 252
AA +L F++ P+
Sbjct: 416 AAAIKL--FTKEPN 427
>gi|374307851|ref|YP_005054282.1| ATP-dependent RNA helicase DeaD [Filifactor alocis ATCC 35896]
gi|291166137|gb|EFE28183.1| ATP-dependent RNA helicase DeaD [Filifactor alocis ATCC 35896]
Length = 539
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 124/208 (59%), Gaps = 4/208 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+ + LS+KYL NP I V N+ + + ++Y + K +LS ++
Sbjct: 180 MLFSATMPAEILSLSKKYLKNPEMIR-VKNKTMTVDQIEQIY-MKVKNADKSEVLSRILQ 237
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + K I+F TK+ DE+ + + + A EALHGD+ Q +R+ LN FR+G+ ++L+
Sbjct: 238 LES-SKKAIIFCNTKKMVDELVVDMQNRGYAVEALHGDLKQQKRDMVLNRFREGQISMLI 296
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI +VDL+I+Y+LP + E +VHR GRTGRAG G + +R +
Sbjct: 297 ATDVAARGLDIRDVDLVINYDLPIEEEQYVHRIGRTGRAGASGKSYSFAYGRDIERLRRI 356
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVV 207
E+ CK + S P + V E Q +
Sbjct: 357 EKYAKCKIKEESIPRYDKVKEKIIHQYI 384
>gi|441517957|ref|ZP_20999687.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia hirsuta DSM
44140 = NBRC 16056]
gi|441455272|dbj|GAC57648.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia hirsuta DSM
44140 = NBRC 16056]
Length = 582
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 136/225 (60%), Gaps = 11/225 (4%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP + +L+RKYLD+P + + A I ++ + K L+ ++ V
Sbjct: 191 LFSATMPPTIGRLARKYLDDPQEVKV--KAQTSTASNITQRYLTVSHQRKLDALTRVLEV 248
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +TK +E++ L + +++ A++GD+ Q QRERT+N ++G +LVA
Sbjct: 249 EPFDG-MIIFVRTKSGTEELAEKLRARGLSAMAINGDMVQAQRERTINQLKEGGIDILVA 307
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P+D E++VHR GRTGRAG+ GTA+L + +R +R++E
Sbjct: 308 TDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLRAIE 367
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVV----ATLNGVHPESVEFF 221
R + + P V+DV +A++VV A N + E ++ F
Sbjct: 368 RATRQELTEIDLPSVDDV---NAQRVVKFGEAITNNLESEHLDMF 409
>gi|189913376|ref|YP_001964605.1| DEAD/DEAH box helicase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|167781444|gb|ABZ99741.1| ATP-dependent RNA helicase, DEAD-box family (DeaD) [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Length = 534
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 123/206 (59%), Gaps = 6/206 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI-KLYAISTTATSKRTILSDLI 59
+LFSATMP +KKL+ KY +P ++ + EK ++ I ++Y I A +R I I
Sbjct: 191 LLFSATMPEPIKKLASKYQTHPAHVKIAAT--EKSSKNIEQVYYIIDEA--EREIAVVRI 246
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
Y K I+FT+TK++AD++ L+ EALHGD++Q QRE+ L G+ +L
Sbjct: 247 LDYENPFKAIIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVKIL 306
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLD+ ++ L+I+Y LP D E++ HR GRTGRAGK G A+ + T+ + R +
Sbjct: 307 VATDVAARGLDVKDLSLVINYHLPFDSESYTHRIGRTGRAGKSGKAVTLVTTRESRALLR 366
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAE 204
L+ G + P ++V S E
Sbjct: 367 LKGTSGTNLTIAALPTKKEVHLSREE 392
>gi|384158050|ref|YP_005540123.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
amyloliquefaciens TA208]
gi|384167076|ref|YP_005548454.1| ATP-dependent RNA helicase [Bacillus amyloliquefaciens XH7]
gi|328552138|gb|AEB22630.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
amyloliquefaciens TA208]
gi|341826355|gb|AEK87606.1| putative ATP-dependent RNA helicase [Bacillus amyloliquefaciens
XH7]
Length = 494
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 143/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ P ++ + E I+ + + K L+ L+
Sbjct: 180 LLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVSNIQQFYLEVQERKKFDTLTRLLD 237
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLV
Sbjct: 238 IQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 296
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 356
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ LE + V L + ++ F+ A L+E+ DA+
Sbjct: 357 EQTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTTISENNLNFYMTAAAELLEDH--DAVT 414
Query: 239 AALAQLSGFSRPPSS 253
A + ++ P S
Sbjct: 415 VVAAAIKMATKEPDS 429
>gi|302338831|ref|YP_003804037.1| DEAD/DEAH box helicase [Spirochaeta smaragdinae DSM 11293]
gi|301636016|gb|ADK81443.1| DEAD/DEAH box helicase domain protein [Spirochaeta smaragdinae DSM
11293]
Length = 542
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/337 (32%), Positives = 171/337 (50%), Gaps = 21/337 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI--KLYAISTTATSKRTILSDL 58
+LFSATMP +KKL+ Y++ +L+ + E+L + ++Y A+ K L +
Sbjct: 183 LLFSATMPDKIKKLANDYMEG---YELIAVEKEQLTTNLTEQIY-FEVKASDKFEALCRI 238
Query: 59 ITVYAKGGKTIVFTQTKRDADEV-SLALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
I + +VF +TK D D V + L + LHGDISQ QRERTL F++ +
Sbjct: 239 IDI-EDSFYGLVFCRTKNDVDTVVNHLLDRGYDAAPLHGDISQAQRERTLGKFKRQNINI 297
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARG+D+ N+ +I+Y LP DPE +VHR GRTGRAG EGTAI T S+ + +
Sbjct: 298 LVATDVAARGIDVNNLTHVINYSLPQDPEAYVHRIGRTGRAGNEGTAITFITPSEYKRLM 357
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESV-EFFTPTAQRLIEEKG--- 233
+ + + P V D++++ +++ L + + + + + A+R +EE G
Sbjct: 358 FIRKITKTDIKKSQLPKVADIIDAKRKKIDEDLGAIFTKEIDQSYYDWAKRWLEESGKSP 417
Query: 234 TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGF--------MSARSVM 285
+ LAA L+ P+S I +G Q+ +R F ++ R ++
Sbjct: 418 SQILAALLSLSFNDDLNPNSYGEIAEVRGGDRSQIDHHGT-ARLFVALGKKDRITPRQLI 476
Query: 286 GFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIA 322
L+ P +IG I I+ + F L E+I
Sbjct: 477 DLLTSRSPVRPKQIGDIQIMENFSFVTVPFFLAEKIV 513
>gi|160881936|ref|YP_001560904.1| DEAD/DEAH box helicase [Clostridium phytofermentans ISDg]
gi|160430602|gb|ABX44165.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
ISDg]
Length = 527
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 145/276 (52%), Gaps = 13/276 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP + ++R Y + + +V + E I+ Y +K +LS L+
Sbjct: 181 LLFSATMPQPIMDIARTYQKDATIVKVV--KKELTVPKIEQYYYEVRPKNKVDVLSRLLD 238
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+Y+ + +VF TKR DE+ AL+ +E LHGD+ Q QR+R ++ FR GK +LV
Sbjct: 239 MYSPK-RCLVFCNTKRQVDELVTALSGRGFFAEGLHGDLKQQQRDRVMSSFRTGKAEILV 297
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ +V+ + +Y++P D E +VHR GRTGRAG+ G A + + +R +
Sbjct: 298 ATDVAARGIDVDDVEAVFNYDVPQDEEYYVHRIGRTGRAGRTGRAFTLVVGKEVYKLRDI 357
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH-PESVEFFTPTAQRLIEEKGTDAL- 237
+R K + + P V DV AE+++ +N + E + + I E AL
Sbjct: 358 QRYCKTKIKVMPIPSVNDVTAVKAEKILDRINELMDAEDLTKMISIIEAKINESDYTALD 417
Query: 238 --AAALAQLSGFSRPPSSRSLINH-----EQGWVTL 266
AA L G P +++ + EQG V L
Sbjct: 418 VAAAFLKMAMGSDSQPEEQAVPDFGDTGAEQGMVRL 453
>gi|308172326|ref|YP_003919031.1| DEAD/DEAH box helicase [Bacillus amyloliquefaciens DSM 7]
gi|307605190|emb|CBI41561.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
amyloliquefaciens DSM 7]
Length = 511
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 143/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ P ++ + E I+ + + K L+ L+
Sbjct: 197 LLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVSNIQQFYLEVQERKKFDTLTRLLD 254
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLV
Sbjct: 255 IQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 313
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 314 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 373
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ LE + V L + ++ F+ A L+E+ DA+
Sbjct: 374 EQTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTTISENNLNFYMTAAAELLEDH--DAVT 431
Query: 239 AALAQLSGFSRPPSS 253
A + ++ P S
Sbjct: 432 VVAAAIKMATKEPDS 446
>gi|302038923|ref|YP_003799245.1| DEAd-box RNA helicase [Candidatus Nitrospira defluvii]
gi|300606987|emb|CBK43320.1| DEAD-box RNA helicase [Candidatus Nitrospira defluvii]
Length = 576
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 128/212 (60%), Gaps = 3/212 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEK-LAEGIKLYAISTTATSKRTILSDLIT 60
LFSATMP + ++R++L NP+++ + + A ++ A K + L+ ++
Sbjct: 198 LFSATMPPRIASIARRHLKNPVDVTIAREPVKAGAAPRVQQTAYVVARQHKVSALARVLD 257
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ A +VF +T+ + DEV+ AL +EA+HG +SQ QR+R + FR G+ +LV
Sbjct: 258 I-ATPKSALVFCRTRLEVDEVTAALNGRGYRAEAIHGGMSQVQRDRVMQAFRSGQTELLV 316
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDIP+V +I+Y+LP+ E +VHR GRTGRAG+EG A+ + ++R +R++
Sbjct: 317 ATDVAARGLDIPSVSHVINYDLPSSLEVYVHRIGRTGRAGREGAAMTIIEPREQRLLRAV 376
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLN 211
E+ K + P + D+L E+ A++
Sbjct: 377 EQHTKAKITVAAVPSLGDLLAKRLERTKASIQ 408
>gi|268318337|ref|YP_003292056.1| DEAD/DEAH box helicase [Rhodothermus marinus DSM 4252]
gi|262335871|gb|ACY49668.1| DEAD/DEAH box helicase domain protein [Rhodothermus marinus DSM
4252]
Length = 505
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 131/239 (54%), Gaps = 11/239 (4%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
+FSATMP V+ L+R++L +P + L + D AE I+ K L LI +
Sbjct: 220 MFSATMPPRVQALAREFLKDPAFVSL--STDRIAAETIEHRYFIVPPMEKDRALVQLIEL 277
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
I+F TKRD + + L + ++A+ GD+ Q QRER ++ R+G+ +LVA
Sbjct: 278 -ENPESAIIFANTKRDVEYLGQFLKNYGYNADAITGDLPQKQRERIMDRLRKGQLRLLVA 336
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARG+DI ++ + Y++P DPE +VHRSGRTGR GKEGT I++ T + +R++
Sbjct: 337 TDVAARGIDISDLSHVFMYDVPQDPEYYVHRSGRTGRVGKEGTTIVLVTPLEEARLRAIA 396
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEF-------FTPTAQRLIEEK 232
R E + P E V E AE+ VA L + E+ F P ++L +E+
Sbjct: 397 RQYDIPLEKGTLPTPETVAERVAERAVALLEDRYRETTSLDRERIARFVPLVEQLAQEE 455
>gi|229918086|ref|YP_002886732.1| DEAD/DEAH box helicase [Exiguobacterium sp. AT1b]
gi|229469515|gb|ACQ71287.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
Length = 509
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 142/256 (55%), Gaps = 9/256 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +KK++ +++ +P I + E E I + K L LI
Sbjct: 179 LLFSATMPPQIKKIAERFMKSPTIIKVKAK--EMTVENINQQFLELREGQKFDTLCRLID 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + +I+F +TK+ DEV+ AL ++ LHGD++Q +R++ + F+ G +LV
Sbjct: 237 IDSPE-LSIIFARTKKRVDEVTEALIKRGYTADGLHGDLTQSKRDQVIRRFKNGTIDILV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK GTA+ T + V+++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGTALTFITPREFGQVKAI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEE-KGTDAL 237
ER K P + +VLE + +Q L V + +T A L+EE + + L
Sbjct: 356 ERVTNKKMNRRHVPTIAEVLEGNQKQAAEELIERVQAGDFKAYTQLATELLEEYEAVEIL 415
Query: 238 AAALAQLSGFSRPPSS 253
AAA L G ++ P S
Sbjct: 416 AAA---LRGLTKEPDS 428
>gi|403669622|ref|ZP_10934813.1| ATP-dependent RNA helicase exp9 [Kurthia sp. JC8E]
Length = 518
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 139/249 (55%), Gaps = 8/249 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP ++K++ ++ P ++ + E + I Y + + K ILS L+
Sbjct: 179 LLFSATMPPAIRKIADTFMTEPQSVKIKAK--ELTVDNIDQYFVKSQEREKFDILSRLLN 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI--IASEALHGDISQHQRERTLNGFRQGKFTVL 118
V K IVF +TKR DE+S AL SI +E +HGD+SQ +R L F++ K VL
Sbjct: 237 V-QKPELAIVFGRTKRRVDELSHAL-SIRGYVAEGIHGDLSQAKRLSVLRQFKENKIDVL 294
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T + +R
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGVAVTFVTPREMNYLRI 354
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQRLIEE-KGTDA 236
+E + + PP ++ L E V L + ++ + + A+ L+++ D
Sbjct: 355 VEETTKKRMTPLQPPTADEALVGQQEVAVQQLKAIIEKNRLSNYRAMAEELLKDGDAVDF 414
Query: 237 LAAALAQLS 245
+AAAL L+
Sbjct: 415 VAAALKSLT 423
>gi|326789718|ref|YP_004307539.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
gi|326540482|gb|ADZ82341.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
5427]
Length = 592
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 137/236 (58%), Gaps = 7/236 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+ + ++ KY +NP+ +++V E +K Y + ++K +LS LI
Sbjct: 184 VLFSATLAKAILDIANKYQNNPITVNVV--HKELTVPTVKQYYLEVRDSNKVEVLSRLID 241
Query: 61 VYAKGGK-TIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
A K ++VF TKR D++ L + ++E+LHGD+ Q QR+ ++ FR G +L
Sbjct: 242 --ANNFKLSVVFCNTKRRVDDLCRDLQARGYSAESLHGDMKQLQRDNVMSRFRNGLIDIL 299
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
+ATDVAARG+D+ +VD + +Y++P+D E +VHR GRTGRA +EG + + +R
Sbjct: 300 IATDVAARGIDVDDVDAVFNYDVPSDEEYYVHRIGRTGRAQREGVSYTFAAGKELAKLRD 359
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKG 233
++R K + + PP +ED+ E+ ++ + + E + +T ++++EE G
Sbjct: 360 IQRYTKSKIKLIKPPSIEDIQENKLSGIIDDVKAILAEGKLTKYTGFIEKMLEEVG 415
>gi|217976993|ref|YP_002361140.1| DEAD/DEAH box helicase [Methylocella silvestris BL2]
gi|217502369|gb|ACK49778.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
Length = 448
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 115/182 (63%), Gaps = 4/182 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+ FSATMP+ + KL+ L NP + + K A+ ++ + KR IL DL+
Sbjct: 184 LFFSATMPTEIAKLAADLLKNPAQVSV--TPVAKTADRVEQQVLFVETHRKRDILVDLLA 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
AK +TI+FT+TKR AD+V+ L +++ A+HG+ SQ QRER+L FR G+ LV
Sbjct: 242 -DAKMARTIIFTRTKRGADKVAQHLEVCGVSAAAIHGNKSQSQRERSLASFRAGRVRALV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATD+AARG+D+ V +++++LP PE +VHR GRT RAG EG AI + ++R +R++
Sbjct: 301 ATDIAARGIDVDGVTHVVNFDLPEVPEAYVHRIGRTARAGAEGVAISLCDGAERDLLRNI 360
Query: 180 ER 181
ER
Sbjct: 361 ER 362
>gi|163751207|ref|ZP_02158436.1| ATP-dependent RNA helicase DeaD [Shewanella benthica KT99]
gi|161329036|gb|EDQ00109.1| ATP-dependent RNA helicase DeaD [Shewanella benthica KT99]
Length = 611
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 137/256 (53%), Gaps = 13/256 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +K+++ KYL +P+++ + + +S +K L ++ V
Sbjct: 185 LFSATMPEQIKRVANKYLTDPIHVKIAATTATVETTEQRFVQVSQH--NKLEALVRVLEV 242
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +T+ E++ L + AS LHGD++Q RER + ++G +L+A
Sbjct: 243 EKTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGSLDILIA 301
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +I+Y++P D E ++HR GRTGRAG+ G AIL T + R +R++E
Sbjct: 302 TDVAARGLDVERIRHVINYDIPYDTEAYIHRIGRTGRAGRTGMAILFVTHREMRMLRTIE 361
Query: 181 RDVGCKFEFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIE--EKGT 234
R + + P E V E EQV +N +S++F +L + E T
Sbjct: 362 RATKSRISPMDVPSPESVTERRLSRLGEQVAEIINK---DSLDFMKGAVAQLCQQLEVDT 418
Query: 235 DALAAALAQLSGFSRP 250
D LAAAL Q RP
Sbjct: 419 DVLAAALLQQVQKDRP 434
>gi|392396642|ref|YP_006433243.1| DNA/RNA helicase [Flexibacter litoralis DSM 6794]
gi|390527720|gb|AFM03450.1| DNA/RNA helicase, superfamily II [Flexibacter litoralis DSM 6794]
Length = 617
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 147/263 (55%), Gaps = 14/263 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP + ++++KY ++P + ++ E ++ I+ + K +L L+
Sbjct: 209 VLFSATMPKPILQIAKKYQNSPEIVKVISK--ELTSDNIEQSFLPINPNYKTDVLVRLLA 266
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y ++F TK+ DEV+ L A+EALHGD++QHQR +N FR G+ +LV
Sbjct: 267 -YNGWESMLIFCNTKQRTDEVAETLIQKGYAAEALHGDLAQHQRNLVMNKFRHGRVQILV 325
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR-- 177
ATDVAARG+D+ NV+ +I+Y++P DPE +VHR GRTGRAG +G +I F S +R R
Sbjct: 326 ATDVAARGIDVDNVEAVINYDVPLDPEYYVHRIGRTGRAGNKGVSI-TFISGRREVYRLN 384
Query: 178 SLERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNG-VHPESVEFFTPTAQRL-IEE 231
+ER + + P ++VL E + AT+N E +E +T + L IE
Sbjct: 385 DIERYSKSRIPQGTIPTQQEVLAKKQLRFMENLKATINDEKKAEELESYTALIEMLEIEG 444
Query: 232 KGTDALAAALAQLSGFSRPPSSR 254
+ +AAA+ L S P+ R
Sbjct: 445 ITSKQVAAAVLSLQ-LSNKPTDR 466
>gi|418051651|ref|ZP_12689735.1| DEAD/DEAH box helicase domain protein [Mycobacterium rhodesiae
JS60]
gi|353184343|gb|EHB49870.1| DEAD/DEAH box helicase domain protein [Mycobacterium rhodesiae
JS60]
Length = 565
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 135/236 (57%), Gaps = 9/236 (3%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +KK++ KYL +P+ + + + AE I + K L+ L+ V
Sbjct: 187 LFSATMPPGIKKITTKYLHDPVEVTV--KSKTQTAENITQRYFQVSYPRKIDALTRLLEV 244
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+G IVF +TK+ +EV+ L + A+ A++GDI Q RERT+ + G +LVA
Sbjct: 245 -EEGDAMIVFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVRERTIASLKDGTIDILVA 303
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + ++++++P+DPE++VHR GRTGRAG+ GTA L T +R + S+E
Sbjct: 304 TDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTAFLFVTPRERHLLNSIE 363
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTD 235
R K P VEDV E+ ++ + ++ E F +RLIE+ D
Sbjct: 364 RVTRQKLVESQLPSVEDVNAQRVEKFRDSITDALNAPGFEMF----RRLIEDYERD 415
>gi|116072449|ref|ZP_01469716.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
gi|116064971|gb|EAU70730.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
Length = 607
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 122/196 (62%), Gaps = 8/196 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDL-VGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSATMP +++LS++YL++P + + +QD KL I+ AI+ + K L ++
Sbjct: 235 VLFSATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKL---IRQRAITVPMSHKLEALQRVL 291
Query: 60 TVYAKGGK-TIVFTQTKRDADEVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTV 117
A GG+ I+F +TK V+ L + A L+GD+ Q+QRERT+ R G +
Sbjct: 292 D--ACGGEGVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDI 349
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARGLD+ + L+I+Y++P D E +VHR GRTGRAG+ G A+L T +RR +R
Sbjct: 350 LVATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRERRFIR 409
Query: 178 SLERDVGCKFEFVSPP 193
+LER G E + P
Sbjct: 410 NLERATGQPIELMEVP 425
>gi|376297958|ref|YP_005169188.1| DEAD/DEAH box helicase [Desulfovibrio desulfuricans ND132]
gi|323460520|gb|EGB16385.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
ND132]
Length = 551
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 137/243 (56%), Gaps = 5/243 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATM V ++R+++ + D+V + E + A S R +
Sbjct: 180 LMFSATMGGEVMAIAREFMGD---FDVVRVKPEVSDAPLTRQVFHEIADSDRFEALCRVI 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+VF +T+ DAD V+ LT +E +HGD++Q QRE+ L+GFR+ K T+LV
Sbjct: 237 DARPDFYGLVFVRTRADADLVAARLTQRGYPAEPIHGDLNQAQREKILSGFRERKATILV 296
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+P++ ++++ LP DP+TFVHR+GRTGRAGK+G AI + T ++ R + +
Sbjct: 297 ATDVAARGIDVPDLTHVVNFALPQDPQTFVHRTGRTGRAGKQGVAITLITPNEFRKLMYI 356
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV-HPESVEFFTPTAQRLIEEKGTDALA 238
+ G P +EDV+ S +VV LN + E + A L+ ++ + +
Sbjct: 357 AKSTGIDIAKEPLPRIEDVIHSKKRKVVDELNAILEAEGHGAYLAMAGELLHDRPAEEVV 416
Query: 239 AAL 241
AAL
Sbjct: 417 AAL 419
>gi|172040364|ref|YP_001800078.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
gi|448823346|ref|YP_007416511.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7111]
gi|171851668|emb|CAQ04644.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
gi|448276843|gb|AGE36267.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7111]
Length = 778
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 124/201 (61%), Gaps = 4/201 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMPS ++ LS++YL++P + + Q + AE I+ + K L+ ++ V
Sbjct: 310 LFSATMPSAIRHLSKRYLNSPQEVTVKSTQ--RTAENIEQDYLIVHHREKLDALTRILEV 367
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
I+F +TK D +E++ L + + A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 368 -TDFDAMIMFVRTKNDTEELAERLRARGYEAAAINGDIAQAQRERTVDQLKDGRLDILVA 426
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++P D E++VHR GRTGRAG+ G A+L T +RR ++S+E
Sbjct: 427 TDVAARGLDVERITHVFNYDIPRDTESYVHRIGRTGRAGRSGRAVLFVTPRERRMLKSIE 486
Query: 181 RDVGCKFEFVSPPVVEDVLES 201
R + + P V+ V E+
Sbjct: 487 RATKSRLNEIELPSVDQVNEA 507
>gi|444380024|ref|ZP_21179191.1| Cold-shock DEAD-box protein A [Enterovibrio sp. AK16]
gi|443675845|gb|ELT82559.1| Cold-shock DEAD-box protein A [Enterovibrio sp. AK16]
Length = 624
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 146/254 (57%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP VK++ ++L P ID+ G+ + E ++ K +S L+
Sbjct: 184 VLFSATMPPMVKEIVDRFLREPARIDVAGSN--RTVEKVEQQFWVVKGVEKDEAMSRLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L++ + ALHGDI Q RERT++ ++G +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKRGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG+ G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRAGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GVHPESVEFFTPTAQRLIEEKGTDA-- 236
ER + E + P+ + V E+ ++ A L +S+E F ++L E+ DA
Sbjct: 361 ERVTSTRMEEIQLPLRDKVAEARLARLAADLQEQKESDSIEAFVGLVEKLQEQIDVDAAT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L Q RP
Sbjct: 421 LAAMLLQRQQGKRP 434
>gi|150391484|ref|YP_001321533.1| DEAD/DEAH box helicase [Alkaliphilus metalliredigens QYMF]
gi|149951346|gb|ABR49874.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
QYMF]
Length = 484
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 125/220 (56%), Gaps = 6/220 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
ML SATMPS ++ LS +Y+ +P++ ++ ++ + I + K +LSD IT
Sbjct: 181 MLLSATMPSAIETLSNRYMKDPIHAEI--EEESSAVDRISQERYTVEYRDKMKLLSD-IT 237
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ I+F TK+ DEV+ L + E +HG + Q R R +N F+QG F LV
Sbjct: 238 IVENPDSCIIFCNTKQRVDEVNDELIRLNYTCEKIHGGMEQRDRVRVMNEFKQGYFRYLV 297
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+DI N+ L+I+Y++P D E++VHR GRTGR +EG AI T + + ++ +
Sbjct: 298 ATDVAARGIDIDNISLVINYDIPQDKESYVHRIGRTGRISREGRAITFVTQYEDKFLKDI 357
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVE 219
R +G + + P +E V S E+ V +N PE E
Sbjct: 358 HRYIGKEIPLMQRPEIETV-NDSKEEFVEKIN-TKPEVKE 395
>gi|153955940|ref|YP_001396705.1| RNA helicase [Clostridium kluyveri DSM 555]
gi|219856282|ref|YP_002473404.1| hypothetical protein CKR_2939 [Clostridium kluyveri NBRC 12016]
gi|146348798|gb|EDK35334.1| Predicted RNA helicase [Clostridium kluyveri DSM 555]
gi|219570006|dbj|BAH07990.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 524
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 109/337 (32%), Positives = 171/337 (50%), Gaps = 23/337 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSATMP VK+L+ KY+ N I + N E K Y + L ++
Sbjct: 181 LLFSATMPDQVKRLASKYMSSNTKYITIAKNT--LTVEKTKQYYYEIKHKDRFESLCRIL 238
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
V + I+F +TKR DE+ ++ + E +HGD+ Q+QR TL F++G L
Sbjct: 239 DV-DEPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLDFL 297
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARG+D+ NV +I+Y+LP D E++VHR GRTGRA KEG A + T + ++
Sbjct: 298 VATDVAARGIDVENVSHVINYDLPQDTESYVHRIGRTGRANKEGIAYSLVTPREYILLKQ 357
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDAL 237
+E+ K + P ++++ E+ + + + V E + + F P A L EE +
Sbjct: 358 IEKFTKSKIKRKDIPTIDEIFEAKYKNIEEKIKKVISENNYKNFIPIATELDEEYNLVDV 417
Query: 238 AAALAQLSGFSRPPS---SRSLINHEQGWVTLQLTRDSAFSRGFM---SARSVMGFLSDV 291
AA+L ++ F + S + I E V L FS G M + R ++ F+++
Sbjct: 418 AASLMKII-FDKELSFDYKENSIGIEDNNVRL------FFSIGRMDNITPRKLIKFINET 470
Query: 292 YPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNK 328
A EIG I I+ + ++PE +A +L K
Sbjct: 471 SSVEAYEIGDIDILN----KFTFINVPERVASIILKK 503
>gi|449093157|ref|YP_007425648.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis XF-1]
gi|449027072|gb|AGE62311.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis XF-1]
Length = 474
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 142/253 (56%), Gaps = 7/253 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ P ++ + E I+ + + K L+ L+
Sbjct: 160 LLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVSNIQQFYLEVQERKKFDTLTRLLD 217
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLV
Sbjct: 218 IQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 276
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 277 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 336
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ LE + V L + ++ F+ A L+E+ DA+
Sbjct: 337 EQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLEDH--DAVT 394
Query: 239 AALAQLSGFSRPP 251
A + ++ P
Sbjct: 395 VVAAAIKMATKEP 407
>gi|410623815|ref|ZP_11334625.1| ATP-dependent RNA helicase DeaD [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410156511|dbj|GAC29999.1| ATP-dependent RNA helicase DeaD [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 581
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 143/253 (56%), Gaps = 7/253 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +KK++++YL NP +I + A IK K L+ ++ V
Sbjct: 186 LFSATMPDVIKKITKRYLKNPEHIKIESTVSS--ASMIKQRYCQVAGHHKLEALTRIMEV 243
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +TK E++ L + E L+GDI Q+ RERT+ ++G +LVA
Sbjct: 244 EKFDG-MIIFVRTKTATVELADKLMARGYVVEPLNGDIPQNARERTVEKLKRGDIDILVA 302
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDV ARGLD+ V +++Y++P D E++VHR GRTGRAG+ G AIL + ++R + ++E
Sbjct: 303 TDVVARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFISHREKRLLFAIE 362
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQV-VATLNGVHPESVEFFTPTAQRLIEEK--GTDAL 237
+ + E + P + + ES E+ + + ++ ES+E + P + ++EE D +
Sbjct: 363 KATKQRIENMEIPSISQLNESRLERFKQSIIEAMNDESIESYIPIVESIMEETEASPDLI 422
Query: 238 AAALAQLSGFSRP 250
AALA+++ + P
Sbjct: 423 MAALAKVAQGNEP 435
>gi|85712866|ref|ZP_01043908.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
gi|85693330|gb|EAQ31286.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
Length = 587
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 119/198 (60%), Gaps = 4/198 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ ++KL++ YL +P+NI + + K I+ A +K T L+ L+ V
Sbjct: 187 LFSATMPTAIRKLAKTYLTDPVNIRIAPVEQAK--ANIRQRAWKVMGMTKMTALTRLLEV 244
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ + +VF +T++D +V+ L + L GD++Q QRE+T+ R G VLVA
Sbjct: 245 -TEYQRALVFVRTRQDTMDVAELLQRQGFRAAPLSGDLNQAQREQTVTQLRSGHIKVLVA 303
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDV ARGLD+P + +I+Y+LP+D E++VHR GRTGRAG+ G AIL + +R +R E
Sbjct: 304 TDVVARGLDVPEITHVINYDLPSDTESYVHRIGRTGRAGRSGEAILFYRGKERHLLRHYE 363
Query: 181 RDVGCKFEFVSPPVVEDV 198
+ E+ P E++
Sbjct: 364 KLTNGSIEYFDVPSAEEL 381
>gi|260903903|ref|ZP_05912225.1| DEAD/DEAH box helicase domain-containing protein [Brevibacterium
linens BL2]
Length = 606
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 127/416 (30%), Positives = 198/416 (47%), Gaps = 55/416 (13%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ + +L+ KYL+NP + + + I+ + K L+ ++ V
Sbjct: 195 LFSATMPTSIHRLTGKYLNNPKEVRVASKS--QTGSNIRQRYHMVQHSHKLDALTRILEV 252
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +TK+ +E++ L + + A++GDI Q RERT++ R GK +LVA
Sbjct: 253 EEYEG-IIMFVRTKQATEELAEKLRARGFKASAINGDIPQQARERTIDMLRNGKVDILVA 311
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + L++++++P+D E++VHR GRTGRAG+ G AIL T ++R + S+E
Sbjct: 312 TDVAARGLDVERITLVVNFDIPHDTESYVHRIGRTGRAGRSGEAILFVTPREQRLLGSIE 371
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV--HPESVEFFTPTAQRLIEEK--GTDA 236
R K E + P VE++ + E+ ++ V E E T Q + TD
Sbjct: 372 RATKQKVEQLKMPSVEELTNTRVEKFTKRIDDVLATTELTELATVIEQYELSRNVPATD- 430
Query: 237 LAAALAQLSGFS---------------------------RPPSSRSLINHEQGWVTLQLT 269
+AAALA L S +P RS ++ T +L
Sbjct: 431 IAAALASLVLESNTLKADPMPEPSRGKPGRDRDSGGRDGKPGRERSSRPRDENMTTYRLA 490
Query: 270 --RDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 327
R+ G +V+G +++ + EIG I I ++ + DL + ++L N
Sbjct: 491 IGRNERLQPG-----AVVGAIANEGGLTSKEIGHIDIRSNHTLVDLPKDLDSSVMRKLSN 545
Query: 328 KQIPPGNTISKITKLPALQDDGPSSDNYGR-FSSRDRFSRGGGSRFSRGGARGGAR 382
QI G I D P S R F R+ + G SR R RGGA+
Sbjct: 546 TQI-QGRPI----------DIRPDSGRPARPFKKRNFDKQPGDSRNFRNDRRGGAK 590
>gi|221308280|ref|ZP_03590127.1| hypothetical protein Bsubs1_02593 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312602|ref|ZP_03594407.1| hypothetical protein BsubsN3_02569 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317526|ref|ZP_03598820.1| hypothetical protein BsubsJ_02533 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221321802|ref|ZP_03603096.1| hypothetical protein BsubsS_02604 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321314132|ref|YP_004206419.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
gi|384174130|ref|YP_005555515.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|428277910|ref|YP_005559645.1| hypothetical protein BSNT_00786 [Bacillus subtilis subsp. natto
BEST195]
gi|452916520|ref|ZP_21965143.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus subtilis MB73/2]
gi|134039178|sp|P96614.2|CSHA_BACSU RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|291482867|dbj|BAI83942.1| hypothetical protein BSNT_00786 [Bacillus subtilis subsp. natto
BEST195]
gi|320020406|gb|ADV95392.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis BSn5]
gi|349593354|gb|AEP89541.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|443906300|emb|CAB12265.2| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
subtilis str. 168]
gi|452114660|gb|EME05059.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus subtilis MB73/2]
Length = 494
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 142/253 (56%), Gaps = 7/253 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ P ++ + E I+ + + K L+ L+
Sbjct: 180 LLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVSNIQQFYLEVQERKKFDTLTRLLD 237
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLV
Sbjct: 238 IQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 296
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 356
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ LE + V L + ++ F+ A L+E+ DA+
Sbjct: 357 EQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLEDH--DAVT 414
Query: 239 AALAQLSGFSRPP 251
A + ++ P
Sbjct: 415 VVAAAIKMATKEP 427
>gi|114567412|ref|YP_754566.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114338347|gb|ABI69195.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 530
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 143/244 (58%), Gaps = 4/244 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSAT+P V++L K++ P I L+ + + + E I+ Y + K L +I
Sbjct: 181 LFSATLPDEVRELGTKFMKQP-EIILIESPERTVPE-IEQYYYQVNSRRKIETLCRIIDA 238
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ +++F +TKR+ADE++ LTS ++ALHGD+SQ +R+ ++GFRQG +LVA
Sbjct: 239 -QQPPISLIFCRTKRNADELARVLTSRGYNADALHGDMSQRERDHVMHGFRQGNTKILVA 297
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TD+AARGLDI V + ++++P D ++++HR GRTGRAG+ G AI + +Q R +R +E
Sbjct: 298 TDLAARGLDIELVTHVFNFDIPEDLDSYIHRVGRTGRAGRSGIAITLVEPTQIRLLRMIE 357
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
R G + E P + + +E + ++ + E + A++L+++ + + AA
Sbjct: 358 RHTGKRIERALLPTLAEAVEKRQDLLLERVRQASAEPGDVCLSLAEKLMQQGDPEKMLAA 417
Query: 241 LAQL 244
+L
Sbjct: 418 ALKL 421
>gi|418034442|ref|ZP_12672914.1| ATP-dependent RNA helicase (cold shock) [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|351468695|gb|EHA28904.1| ATP-dependent RNA helicase (cold shock) [Bacillus subtilis subsp.
subtilis str. SC-8]
Length = 480
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 142/253 (56%), Gaps = 7/253 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ P ++ + E I+ + + K L+ L+
Sbjct: 166 LLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVSNIQQFYLEVQERKKFDTLTRLLD 223
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLV
Sbjct: 224 IQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 282
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 283 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 342
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ LE + V L + ++ F+ A L+E+ DA+
Sbjct: 343 EQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLEDH--DAVT 400
Query: 239 AALAQLSGFSRPP 251
A + ++ P
Sbjct: 401 VVAAAIKMATKEP 413
>gi|337290483|ref|YP_004629504.1| hypothetical protein CULC22_00872 [Corynebacterium ulcerans
BR-AD22]
gi|384515395|ref|YP_005710487.1| hypothetical protein CULC809_00857 [Corynebacterium ulcerans 809]
gi|397653720|ref|YP_006494403.1| hypothetical protein CULC0102_0969 [Corynebacterium ulcerans 0102]
gi|334696596|gb|AEG81393.1| hypothetical protein CULC809_00857 [Corynebacterium ulcerans 809]
gi|334698789|gb|AEG83585.1| hypothetical protein CULC22_00872 [Corynebacterium ulcerans
BR-AD22]
gi|393402676|dbj|BAM27168.1| hypothetical protein CULC0102_0969 [Corynebacterium ulcerans 0102]
Length = 674
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 127/201 (63%), Gaps = 4/201 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS++Y+ +P I + + + I ++ +K L+ ++ V
Sbjct: 245 LFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNTNITQRFLNVAHRNKLDALTRILEV 302
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +EV+ L + ++ A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 303 -TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 361
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++PND E++VHR GRTGRAG+ G AIL T +RR +RS+E
Sbjct: 362 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 421
Query: 181 RDVGCKFEFVSPPVVEDVLES 201
R + + P V++V ES
Sbjct: 422 RATNAELIEMDLPTVDEVNES 442
>gi|33863354|ref|NP_894914.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9313]
gi|33640803|emb|CAE21258.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
MIT 9313]
Length = 635
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 143/271 (52%), Gaps = 12/271 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMPS +++LS++YL P I + E A I+ I+ + K L ++
Sbjct: 261 VLFSATMPSEIRRLSKRYLHEPAEITIKSRDQE--ARLIRQRCITLQNSHKLEALRRVLE 318
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTVLV 119
+ G I+F +TK V+ AL + A L+GD+ Q+QRERT+ R+G +LV
Sbjct: 319 AFTGEG-VIIFARTKVITLTVAEALEAAGHDVAVLNGDVPQNQRERTVERLRKGSVNILV 377
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ + L+I+Y++P D E +VHR GRTGRAG+ G AIL +RR V
Sbjct: 378 ATDVAARGLDVDRISLVINYDIPFDSEAYVHRIGRTGRAGRSGEAILFVNPRERRFVGGF 437
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV------HPESVEFFTPTAQRLIEEKG 233
ER VG E + P + +S +++ L + E QR+++E
Sbjct: 438 ERAVGQPIEPMDIPNNAAINQSRLDRLRQRLTTAAKTERDNSEETALLQELIQRVVQELS 497
Query: 234 TDALAAALAQLSGFSRPPSSRSLINHEQGWV 264
ALA L F+ P L+ ++GW+
Sbjct: 498 LSPEQLALAALE-FAVGPGP-ILVQADEGWL 526
>gi|120405422|ref|YP_955251.1| DEAD/DEAH box helicase [Mycobacterium vanbaalenii PYR-1]
gi|119958240|gb|ABM15245.1| ATP-dependent RNA helicase CsdA [Mycobacterium vanbaalenii PYR-1]
Length = 564
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 122/200 (61%), Gaps = 4/200 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +KK++ KYL +P+ + + + AE I + K L+ L+ V
Sbjct: 191 LFSATMPPAIKKITAKYLHDPVEVTV--KSKTQTAENITQRYFLVSYPRKMDALTRLLEV 248
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+G IVF +TK+ +EV+ L S A+ A++GDI Q RERT++ + G +LVA
Sbjct: 249 -EQGDAMIVFVRTKQATEEVAEKLRSRGFAAAAINGDIPQAVRERTISQLKDGTIDILVA 307
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + ++++++P+DPE++VHR GRTGRAG+ GTA+L T +R + ++E
Sbjct: 308 TDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLGAIE 367
Query: 181 RDVGCKFEFVSPPVVEDVLE 200
R K P VEDV E
Sbjct: 368 RVTRQKLVESELPSVEDVNE 387
>gi|16077525|ref|NP_388339.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
subtilis str. 168]
gi|402774703|ref|YP_006628647.1| ATP-dependent RNA helicase [Bacillus subtilis QB928]
gi|430757089|ref|YP_007210799.1| hypothetical protein A7A1_1597 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|1881268|dbj|BAA19295.1| ydbR [Bacillus subtilis]
gi|402479888|gb|AFQ56397.1| ATP-dependent RNA helicase [Bacillus subtilis QB928]
gi|430021609|gb|AGA22215.1| Hypothetical protein YdbR [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 511
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 142/253 (56%), Gaps = 7/253 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ P ++ + E I+ + + K L+ L+
Sbjct: 197 LLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVSNIQQFYLEVQERKKFDTLTRLLD 254
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLV
Sbjct: 255 IQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 313
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 314 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 373
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ LE + V L + ++ F+ A L+E+ DA+
Sbjct: 374 EQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLEDH--DAVT 431
Query: 239 AALAQLSGFSRPP 251
A + ++ P
Sbjct: 432 VVAAAIKMATKEP 444
>gi|416350513|ref|ZP_11680893.1| putative ATP-dependent RNA helicase [Clostridium botulinum C str.
Stockholm]
gi|338196239|gb|EGO88444.1| putative ATP-dependent RNA helicase [Clostridium botulinum C str.
Stockholm]
Length = 453
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 173/358 (48%), Gaps = 28/358 (7%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATM + +LS+KY +N I +V Q I+ + +K +LS LI
Sbjct: 107 ILFSATMAKAIIELSKKYQNNAEFIKVVHKQ--LTVPNIEQRYLEVKENNKLEVLSRLID 164
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +++F TK+ DEV L + +E LHGD+ Q QR+R +N FR G +LV
Sbjct: 165 M-RNPKLSVIFCNTKKRVDEVVSQLQARGYFAEGLHGDMKQPQRDRVMNKFRNGTIEILV 223
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ +V+ + +Y+LP D E +VHR GRTGRAG+ G A R +R +
Sbjct: 224 ATDVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRSGIAFTFVAGKAIRKLRDI 283
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESV--EFFTPTAQRLIEEKGTDAL 237
ER K + P DV E + + G E ++ L E+ T +
Sbjct: 284 ERYTKTKVKRAEIPSASDVEEFKVNAFLEKVKGTIEEGHLGKYIDYIENLLDEDYATIDI 343
Query: 238 AAALAQLSGFSRPPSSRSLINHEQG---------WVTLQLTRDSAFSRGFMSARSVMGFL 288
AAAL ++S IN E G + + + R++ + AR V+G +
Sbjct: 344 AAALLKMSLGEEKKEEILDINEEIGDTGAEPGMVRLFINIGRNNK-----IQARDVIGAI 398
Query: 289 SDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTI--SKITKLPA 344
+ A IGKI I + ++P+E A+E+L +I NTI KI PA
Sbjct: 399 AGETGIAGKVIGKIDIYD----KFTFVEVPKENAREVL--EIMKNNTIKGKKINIEPA 450
>gi|296332826|ref|ZP_06875286.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305673172|ref|YP_003864844.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296150106|gb|EFG90995.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305411416|gb|ADM36535.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
spizizenii str. W23]
gi|407956155|dbj|BAM49395.1| ATP-dependent RNA helicase [Bacillus subtilis BEST7613]
gi|407963426|dbj|BAM56665.1| ATP-dependent RNA helicase [Bacillus subtilis BEST7003]
Length = 494
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 143/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ P ++ + E I+ + + K L+ L+
Sbjct: 180 LLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVSNIQQFYLEVQERKKFDTLTRLLD 237
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLV
Sbjct: 238 IQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 296
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 356
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ LE + V L + ++ F+ A L+E+ DA+
Sbjct: 357 EQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLEDH--DAVT 414
Query: 239 AALAQLSGFSRPPSS 253
A + ++ P +
Sbjct: 415 VVAAAIKMATKEPDN 429
>gi|282890698|ref|ZP_06299218.1| hypothetical protein pah_c026o010 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175666|ref|YP_004652476.1| deAD-box ATP-dependent RNA helicase CshA [Parachlamydia
acanthamoebae UV-7]
gi|281499291|gb|EFB41590.1| hypothetical protein pah_c026o010 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336480024|emb|CCB86622.1| deAD-box ATP-dependent RNA helicase CshA [Parachlamydia
acanthamoebae UV-7]
Length = 538
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 126/215 (58%), Gaps = 4/215 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP ++KL++ +L P I + + E ++ I+ + + L L+
Sbjct: 225 LLFSATMPLPIQKLAKTFLREPEFIKI--TKKETASQNIQQICYVIHESERDDALVRLLD 282
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ K+I+F +TK+D D VS LTS + LHGD+ Q QR+R ++GFRQ +F +L
Sbjct: 283 AQEEA-KSIIFCRTKKDVDRVSSFLTSRGYGARGLHGDMEQPQRQRVIDGFRQNEFQILA 341
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGL++ +V + +Y LP + E++VHR GRTGRAG +G AI + + ++ +
Sbjct: 342 ATDVAARGLNVLDVTHVYNYHLPYETESYVHRIGRTGRAGNKGIAITLLNPREVSGLKHI 401
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 214
R+ G E+ S P ++DV AE+ + + H
Sbjct: 402 FREHGGNIEYQSIPTLQDVKRKFAEKFLKKVQQRH 436
>gi|269104706|ref|ZP_06157402.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268161346|gb|EEZ39843.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 647
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 136/459 (29%), Positives = 215/459 (46%), Gaps = 41/459 (8%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP VK++ ++L NP ID+ G ++ +A+ + + + ++ L T
Sbjct: 184 VLFSATMPPIVKEIVDRFLRNPARIDVAG-ENRTVAKVDQQFWVVKGVEKDEAMMRLLET 242
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+IVF +T++D + ++ L + + ALHGDI Q RERT+ ++G +LV
Sbjct: 243 --EDTDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVEHIKRGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG+EG AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGREGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQRLIEEKGTDA-- 236
ER + E + P+ + V E+ ++ L +S VE F ++L E DA
Sbjct: 361 ERVTKSRMEEIQLPLRDAVAEARLNRLAKELEAQKEQSSVEAFVELVEKLQESIEVDAAT 420
Query: 237 LAAALAQLSGFSRP-------PSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLS 289
LAA L Q +RP P +L +Q RD R F +
Sbjct: 421 LAAMLLQRQQGNRPLFYKGPDPMIAALERDKQRRDRRGNDRDRGERGERGERRERRTFNA 480
Query: 290 DVYPTAADEIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGNTI---S 337
+ T ++G+ I V GA+ F ++A E Q+P T +
Sbjct: 481 ADWDTYQLQVGREQGIQVKDVVGAIANELGLNKDFIGAIKLAPEHTYVQLPKKMTAEVAA 540
Query: 338 KITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRS--- 394
++ KL Q++ + G R R GG +R G RGG RG +R G R
Sbjct: 541 QLKKLRIRQNEVKAVVVDGEVL---REHRRGGRDGNRDGNRGGYRGNRDGNRDGNREGGR 597
Query: 395 ---------SRSWGSDDEDGFSSSRGGRSFRSGNNRGSR 424
R+ G D+ + R R+ +N G R
Sbjct: 598 GRRDGERRFDRNRGGDNRGTYRGERNHGGDRNNSNGGER 636
>gi|422324246|ref|ZP_16405283.1| hypothetical protein HMPREF0737_00393 [Rothia mucilaginosa M508]
gi|353344302|gb|EHB88614.1| hypothetical protein HMPREF0737_00393 [Rothia mucilaginosa M508]
Length = 752
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 149/499 (29%), Positives = 232/499 (46%), Gaps = 84/499 (16%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ ++K++++YL++P+ + + + I + + K ++ ++ V
Sbjct: 265 LFSATMPNSIRKIAQQYLNDPVEVRVKAKT--TTSANISQRYMQVMHSHKLDAMTRVLEV 322
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G IVF +TK++ +EV+ L + A+ A++GDI Q RERT++ R G+ +LVA
Sbjct: 323 ENYDG-IIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILVA 381
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + L+++Y++P+D E++VHR GRTGRAG+EG AIL T ++ +R +E
Sbjct: 382 TDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYMLRQIE 441
Query: 181 RDVGCKFEFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
+ K E + P E V E+ A+Q+ T + E + FF + E T A
Sbjct: 442 KATRQKVEPMHMPTAEAVNETRKQRFAQQITET---IESEDLSFFRQIIEDYENEHDTTA 498
Query: 237 --LAAA---LAQ------------LSGFSRPPS---------SRSLINHEQGWVTLQLTR 270
+AAA +AQ ++ SRP S ++++G V +L
Sbjct: 499 EDIAAALAVIAQQGRPFFLDEEEDIARNSRPFSDDDSDRGGRKAKRAHNDEGMVNYKLNV 558
Query: 271 DSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQI 330
+ SR ++A +++G L++ +IG I I + G DLP + L + +I
Sbjct: 559 GRS-SR--VTAGAIVGALANEGGIKGSQIGSIDIRQHFTIVGLPEDLPRDFFDRLRDTKI 615
Query: 331 PPGNTISKITKLPALQDDGPSSDNYGRFSSR----------DRFSRGGGSRFSRGGARGG 380
G I+ +D+GP GR DR G RG GG
Sbjct: 616 A-GEFIN------IRKDNGPKGGGGGRSFGGGRREGGFRDFDRREGGRREGGYRGNREGG 668
Query: 381 ARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSD----DDWLIG 436
GG D + RGGR F G R R D D+ G
Sbjct: 669 RDFGGDRDFK-------------------RGGRDF--GGKRNDRDFGGRDFGGRDNRRDG 707
Query: 437 GSRSSRSSSRD--SRSFGG 453
G R +R RD R FGG
Sbjct: 708 GYRGNRDGGRDFGGRDFGG 726
>gi|124022674|ref|YP_001016981.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9303]
gi|123962960|gb|ABM77716.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
MIT 9303]
Length = 636
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 144/273 (52%), Gaps = 16/273 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMPS +++LS++YL P I + E A I+ I+ + K L ++
Sbjct: 261 VLFSATMPSEIRRLSKRYLHEPAEITIKSRDQE--ARLIRQRCITLQNSHKLEALRRVLE 318
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTVLV 119
+ G I+F +TK V+ AL S A L+GD+ Q+QRERT+ R+G +LV
Sbjct: 319 AFTGEG-VIIFARTKVITLTVAEALESAGHDVAVLNGDVPQNQRERTVERLRKGSVNILV 377
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ + L+I+Y++P D E +VHR GRTGRAG+ G AIL +RR V
Sbjct: 378 ATDVAARGLDVDRISLVINYDIPFDSEAYVHRIGRTGRAGRSGEAILFVNPRERRFVGGF 437
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV------HPESVEFFTPTAQRLIEEKG 233
ER VG E + P + +S +++ L + E QR++EE
Sbjct: 438 ERAVGQPIEPMDIPNNAAINQSRLDRLRQRLTTAAKTERDNSEETALLQELIQRVVEELS 497
Query: 234 T--DALAAALAQLSGFSRPPSSRSLINHEQGWV 264
+ LA A +L+ P L+ ++GW+
Sbjct: 498 LSPEQLAVAALELAVGPGP----ILVQADEGWL 526
>gi|443633956|ref|ZP_21118132.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
gi|443346152|gb|ELS60213.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
Length = 474
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 143/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ P ++ + E I+ + + K L+ L+
Sbjct: 160 LLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVSNIQQFYLEVQERKKFDTLTRLLD 217
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLV
Sbjct: 218 IQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 276
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 277 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 336
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ LE + V L + ++ F+ A L+E+ DA+
Sbjct: 337 EQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLEDH--DAVT 394
Query: 239 AALAQLSGFSRPPSS 253
A + ++ P +
Sbjct: 395 VVAAAIKMATKEPDN 409
>gi|383767838|ref|YP_005446821.1| ATP-dependent RNA helicase DeaD [Phycisphaera mikurensis NBRC
102666]
gi|381388108|dbj|BAM04924.1| ATP-dependent RNA helicase DeaD [Phycisphaera mikurensis NBRC
102666]
Length = 693
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 127/224 (56%), Gaps = 7/224 (3%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +K++++ L +P +I G K AE ++ K L+ ++
Sbjct: 249 LFSATMPAQIKRIAQSKLKDPQHIRTAGKT--KTAETVRQRYAYVPGRRKINALTRVLDA 306
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+VF +T+ EV+ L + A+EAL G++ Q QRER + + G+ V+VA
Sbjct: 307 EPHEA-VLVFVRTRNACTEVADQLQARGHAAEALSGEVPQRQRERIVESLKDGRIDVVVA 365
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ V +I+Y++P DPE ++HR GRTGRAG+ G AIL T ++R + LE
Sbjct: 366 TDVAARGLDVERVGHVINYDMPTDPEAYIHRIGRTGRAGRSGEAILFVTPREKRMLGELE 425
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV---HPESVEFF 221
R G E + PP +D+ + + +A ++ PE+V FF
Sbjct: 426 RITGQAIEEMQPPSDKDIRDLRVSRFLAAVDAQPEEQPEAVAFF 469
>gi|427725149|ref|YP_007072426.1| DEAD/DEAH box helicase [Leptolyngbya sp. PCC 7376]
gi|427356869|gb|AFY39592.1| DEAD/DEAH box helicase domain protein [Leptolyngbya sp. PCC 7376]
Length = 494
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 141/251 (56%), Gaps = 16/251 (6%)
Query: 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIK--LYAISTTATSKRTILSDLIT 60
FSATMP ++ L +L+ P+NI + Q + + IK Y I + + +L I
Sbjct: 182 FSATMPPAIRDLVANFLEEPINITI--KQPQVTPDRIKQEAYMIPRGWSKTKALLP--IL 237
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
A I+F +TKR A E++ L +++ HGD+SQ QRE+ + F+ G+ ++V
Sbjct: 238 EMANPESAIIFVRTKRTASELTNELLEAGQSADEYHGDLSQAQREKLVRRFKDGRIKMIV 297
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATD+AARGLD+ N+ +++++LP++ E+++HR GRTGRAGK GTAI + S RR +R +
Sbjct: 298 ATDIAARGLDVANLSHVVNFDLPDNTESYIHRIGRTGRAGKTGTAIALVEPSDRRLLRQI 357
Query: 180 ERDVG-----CKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGT 234
ER V CK P V + + QV L G E + F P +RL +E
Sbjct: 358 ERRVKQSLTTCKIP-SRPEVEANRINRLETQVREALAG---ERMASFLPIVKRLGDEYDP 413
Query: 235 DALAAALAQLS 245
A+AAA+ Q++
Sbjct: 414 QAIAAAVLQMT 424
>gi|336322978|ref|YP_004602945.1| DEAD/DEAH box helicase [Flexistipes sinusarabici DSM 4947]
gi|336106559|gb|AEI14377.1| DEAD/DEAH box helicase domain protein [Flexistipes sinusarabici DSM
4947]
Length = 527
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 138/249 (55%), Gaps = 9/249 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI--KLYAISTTATSKRTILSDL 58
+LFSATMP + ++++++ ++ + E+LA G+ ++Y K L
Sbjct: 183 LLFSATMPREILNIAKRFMGE---FEIFRTKSEELAAGLTEQIY-FEVREPDKFEALCR- 237
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
I K I+F +TK D D+++ L +EALHGDISQHQRER L FR + +
Sbjct: 238 IRDMEKEFYGIIFCRTKVDVDKLANRLIDRGYNAEALHGDISQHQRERILKKFRNKQVNM 297
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARG+DI ++ +I+Y LP DPE ++HR GRTGRAGKEGTAI T + R +
Sbjct: 298 LVATDVAARGIDIQDLTHVINYALPQDPEAYIHRIGRTGRAGKEGTAITFVTPEEYRKLL 357
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVV-ATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
+ R S P V +++E+ E + L ++ + + + A+ L+E D
Sbjct: 358 FIMRKAKTDIRKESLPGVGEIIEAKKENIKEEILEALNSDELRNYKDIAEDLLENAEPDK 417
Query: 237 LAAALAQLS 245
L +AL ++
Sbjct: 418 LVSALLNIA 426
>gi|333911306|ref|YP_004485039.1| DEAD/DEAH box helicase [Methanotorris igneus Kol 5]
gi|333751895|gb|AEF96974.1| DEAD/DEAH box helicase domain protein [Methanotorris igneus Kol 5]
Length = 434
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 141/245 (57%), Gaps = 8/245 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR-TILSDLI 59
+LFSAT+P + L+++Y++ LV + E L + + SK+ L +I
Sbjct: 181 LLFSATLPRTILNLAKRYMEE---YRLVSVKKETLTTNLVEQIYYEVSNSKKFEALCRVI 237
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
V +VF +T+ D +EV+ L ++ALHGDI+Q QRER LN F++ + +L
Sbjct: 238 DV-EDDFYGLVFCKTRADVNEVANKLIEKGYEADALHGDIAQKQRERILNRFKKKRINIL 296
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARG+DI N+ +I+Y LP +PE++VHR GRTGRAGK+GTAI T ++ R ++
Sbjct: 297 VATDVAARGIDINNLTHVINYSLPQNPESYVHRIGRTGRAGKKGTAISFVTPNEYRKLKY 356
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTD-A 236
+++ P ++DV+ + +++ + + E + + +Q LI E G + A
Sbjct: 357 IKKIAKVNIRKEKLPEIDDVINAKKSKILNNIVEIIKSEDYQEYVEISQELINEFGAERA 416
Query: 237 LAAAL 241
LAA L
Sbjct: 417 LAALL 421
>gi|374385841|ref|ZP_09643343.1| hypothetical protein HMPREF9449_01729 [Odoribacter laneus YIT
12061]
gi|373224786|gb|EHP47122.1| hypothetical protein HMPREF9449_01729 [Odoribacter laneus YIT
12061]
Length = 596
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 135/235 (57%), Gaps = 14/235 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP V++++R YL +P I VG +++ A+ ++ A L +I
Sbjct: 182 LFSATMPREVERIARNYLHSPQEI-AVGKKNQG-ADTVRHQYYQVKAKDFYETLHRVIDC 239
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
A I+FT+TK DA +++ L I +ALHGD+SQ QR+ + FR + VLVA
Sbjct: 240 -APDMYAIIFTRTKIDARDIAHKLQKDGIDCDALHGDLSQAQRDEVMARFRSKRLKVLVA 298
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ N+ +I+Y LP D E++ HRSGRTGRAGKEG ++ + S ++ +R +E
Sbjct: 299 TDVAARGLDVDNLTHVINYNLPEDVESYTHRSGRTGRAGKEGISVAIINSKEKSKLRRIE 358
Query: 181 RDVGCKFEFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIEE 231
+ +FE+ P E+V + A++++A E E TP Q L ++
Sbjct: 359 GILKKQFEYKEVPGGEEVCRAQLLYYADKILAA------EQKETLTPYQQELFDK 407
>gi|297584103|ref|YP_003699883.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
selenitireducens MLS10]
gi|297142560|gb|ADH99317.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
MLS10]
Length = 528
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 141/253 (55%), Gaps = 9/253 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP ++KLS KY+++P + + ++ E A I +K L LI
Sbjct: 178 LLFSATMPPPIRKLSNKYMNSPEQVTI--SKSEVTAPSINQVYYKVLEKNKLDSLCRLID 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
I+F +TK+ E++ AL + ++ LHGD++Q QR+ + FR L+
Sbjct: 236 -SENTDLGIIFCRTKKGVSELAEALQARGYRADGLHGDLTQSQRDSVMKKFRDSSIDFLI 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ NV +++Y++P DPE++VHR GRTGRAG+EG A+ + T + + +RS+
Sbjct: 295 ATDVAARGIDVQNVTHVVNYDIPQDPESYVHRIGRTGRAGREGIALTLVTPREMKHLRSI 354
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAE----QVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
E ++ K + P VE+V+E + QV+ + E V + L++ +
Sbjct: 355 ENEIKMKIPSQNLPSVEEVIEKQQDVWKSQVIDMIEN-DDEGVSHYDAIVTDLLDHYQPE 413
Query: 236 ALAAALAQLSGFS 248
+ AL +L+ +S
Sbjct: 414 KVVTALMKLAFYS 426
>gi|268680741|ref|YP_003305172.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
gi|268618772|gb|ACZ13137.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
DSM 6946]
Length = 583
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 124/203 (61%), Gaps = 5/203 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI-KLYAISTTATSKRTILSDLI 59
+LFSATMP +K+L+ K L P + + +D E I +LY + ++ L
Sbjct: 179 LLFSATMPEPIKRLASKILHEPKFVSIT-PKDHTTNEDIEQLYYVINEYERDDAMIRLLD 237
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ + K+IVF +TK++ D +S L ++ A++ LHGD+ Q+QRE + FR + +L
Sbjct: 238 ALEPE--KSIVFCRTKKEVDRLSTQLMAVGYAAKGLHGDMEQNQRESVIKAFRSSQIEIL 295
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGL++ ++ + +Y +P DPE++VHR GRTGRAGK+GTAI + T + +++
Sbjct: 296 VATDVAARGLNVADISHVFNYHMPFDPESYVHRIGRTGRAGKKGTAITLVTPIEFHSMQR 355
Query: 179 LERDVGCKFEFVSPPVVEDVLES 201
+ + VG K E P + DV E+
Sbjct: 356 IGKKVGSKIEHRIVPNLRDVKEN 378
>gi|424780375|ref|ZP_18207249.1| Cold-shock DEAD-box protein A [Catellicoccus marimammalium
M35/04/3]
gi|422843078|gb|EKU27524.1| Cold-shock DEAD-box protein A [Catellicoccus marimammalium
M35/04/3]
Length = 494
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 143/249 (57%), Gaps = 11/249 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K++ +++ NP ++ + E A I Y + K IL+ L+
Sbjct: 178 LLFSATMPEDIKRIGVQFMKNPEHVQIKAK--EMTASLIDQYFMRVKEFEKFDILTRLLD 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V+ +I+F +TKR DE+S AL S +E +HGD+SQ +R L F++G+ +LV
Sbjct: 236 VHT-PELSIIFGRTKRRVDELSRALESRGYKAEGIHGDLSQQKRMDVLKAFKKGELDILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G ++ T ++ ++++
Sbjct: 295 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKDGMSVTFVTPNEMSYLQTI 354
Query: 180 ERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
E+ + + PP ++ ++S+ E++ L ++ + A +L+E+
Sbjct: 355 EKLTKKRMTPLKPPTKKEAFAGQMQSAMEEIAQKLENT---DLDRYVKQADQLLEQYSAI 411
Query: 236 ALAAALAQL 244
L A L ++
Sbjct: 412 DLTALLLKV 420
>gi|294142501|ref|YP_003558479.1| ATP-dependent RNA helicase DeaD [Shewanella violacea DSS12]
gi|293328970|dbj|BAJ03701.1| ATP-dependent RNA helicase DeaD [Shewanella violacea DSS12]
Length = 617
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 139/256 (54%), Gaps = 13/256 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +K+++ KYL P+++ + E I+ + + +K L ++ V
Sbjct: 185 LFSATMPEQIKRVANKYLTEPVHVKIAATT--ATVETIEQRFVQVSQHNKLEALVRVLEV 242
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ G I+F +T+ E++ L + AS LHGD++Q RER ++ ++G +L+A
Sbjct: 243 ESTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGSLDILIA 301
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +I+Y++P D E +VHR GRT RAG+ G AIL T + R +R++E
Sbjct: 302 TDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTDRAGRSGMAILFVTHREMRMLRTIE 361
Query: 181 RDVGCKFEFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIE--EKGT 234
R + + P E V E EQV ++ +S++F +L + E T
Sbjct: 362 RATKSRISPMDVPSPESVTERRLSRLGEQVAEIISK---DSLDFMKGAVAQLCQQLEVDT 418
Query: 235 DALAAALAQLSGFSRP 250
D LAAAL Q RP
Sbjct: 419 DILAAALLQQVQKERP 434
>gi|394994548|ref|ZP_10387262.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. 916]
gi|393804648|gb|EJD66053.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. 916]
Length = 494
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 142/255 (55%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ P ++ + E I+ + + K L+ L+
Sbjct: 180 LLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVSNIQQFYLEVQERKKFDTLTRLLD 237
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLV
Sbjct: 238 IQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 296
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 356
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ LE + V L + ++ F+ A L+E+ DA+
Sbjct: 357 EQTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTAISENNLNFYMTAAAELLEDH--DAVT 414
Query: 239 AALAQLSGFSRPPSS 253
+ ++ P S
Sbjct: 415 VVAPAIKMATKEPDS 429
>gi|72160918|ref|YP_288575.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Thermobifida fusca YX]
gi|71914650|gb|AAZ54552.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Thermobifida fusca YX]
Length = 503
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 115/197 (58%), Gaps = 10/197 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEG---IKLYAISTTATSKRTILSD 57
MLFSATMPS + LSRKYL P +I +D+ L G + + T K +L+
Sbjct: 198 MLFSATMPSEIVALSRKYLRRPTHIR---AEDDPLDTGSGQVTQHVFRTHPLDKLEMLAR 254
Query: 58 LITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFT 116
L+ +G T+VF QTKR+ VS L A+ A+HGD+ Q QRER L FR GK
Sbjct: 255 LLQARNRG-LTMVFCQTKRECHHVSTELCRRGFAAAAVHGDLGQGQRERALRAFRNGKVD 313
Query: 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 176
VLVATDVAARG+D+ +V +++YE P+D +T+ HR GRTGRAG+ GTA+ +
Sbjct: 314 VLVATDVAARGIDVDDVTHVVNYECPDDEKTYTHRIGRTGRAGRSGTAVTFIDWQELLRW 373
Query: 177 RSLERDVGCKFEFVSPP 193
+ + R +G F PP
Sbjct: 374 KLINRALG--LPFADPP 388
>gi|225028959|ref|ZP_03718151.1| hypothetical protein EUBHAL_03251 [Eubacterium hallii DSM 3353]
gi|224953734|gb|EEG34943.1| DEAD/DEAH box helicase [Eubacterium hallii DSM 3353]
Length = 529
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 134/251 (53%), Gaps = 8/251 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP + +L+R Y NP I ++ + E I Y +K +LS L+
Sbjct: 182 MLFSATMPKPIMELARAYQQNPEIIKVI--RKELTVPNITQYYYEVRPKNKSEVLSRLLD 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+Y ++VF TK+ DE+ L +E LHGD+ Q R+R ++ FR GK +LV
Sbjct: 240 IY-DPKLSVVFCNTKKGVDELVADLKGRGYFAEGLHGDMKQTMRDRVMHRFRSGKTDILV 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ +VD + +Y+LP D E +VHR GRTGRAG+ G A + ++ +
Sbjct: 299 ATDVAARGIDVDDVDAVFNYDLPQDEEYYVHRIGRTGRAGRTGMAFSFVVGREVYKLKDI 358
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEK---GTD 235
R K + P + DV E+ E++ ++ + +++ + + + EK D
Sbjct: 359 RRYCKAKIKAQPIPSLNDVTETRVEKIFDRIDHYIEDQNLNKYIDMVEEFVNEKDYTAMD 418
Query: 236 ALAAALAQLSG 246
AA LA++ G
Sbjct: 419 VAAAFLAEILG 429
>gi|334563107|ref|ZP_08516098.1| ATP-dependent RNA helicase [Corynebacterium bovis DSM 20582]
Length = 785
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 124/198 (62%), Gaps = 4/198 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMPS +++LS++YL+NP I + NQ + AE I + + +K L+ ++ V
Sbjct: 315 LFSATMPSGIRRLSKQYLNNPREITVKSNQ--RTAENITQDFLMVSHRNKLDALTRILEV 372
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
I+F +TK + +E++ L + A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 373 -TDFEAMIMFVRTKNETEELAERLCDRGFNAAAINGDIAQAQRERTVDQLKDGRLDILVA 431
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++P+D E++VHR GRTGRAG+ G AIL T +RR ++++E
Sbjct: 432 TDVAARGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAGRSGRAILFVTPRERRLLKAIE 491
Query: 181 RDVGCKFEFVSPPVVEDV 198
R + P V+ V
Sbjct: 492 RATKSTLNEIDLPDVDAV 509
>gi|374261655|ref|ZP_09620233.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
gi|363537749|gb|EHL31165.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
Length = 584
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 7/247 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +++++ YL+NP +I++ + + I+ + + K L ++ V
Sbjct: 185 LFSATMPHRIRQIANTYLNNPASIEI--RSETATVKSIEQRFLFASGHQKPDALVRVLAV 242
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G IVF +TK +EV+ L + + A+HGDI+Q RER + FRQG +LVA
Sbjct: 243 EEYQG-VIVFVRTKSSTEEVAELLQQQGLRAMAIHGDITQALRERIIAQFRQGAIDILVA 301
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ V +I+Y+LP+D ET+VHR GRTGRAG+ G AIL T + R + S+E
Sbjct: 302 TDVAARGLDVERVTHVINYDLPHDNETYVHRIGRTGRAGRSGVAILFVTPKESRLISSVE 361
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA--L 237
R + V+ P + + ++ +A + + E++ + + I+E A +
Sbjct: 362 RHTRQRITKVNVPNDHMIQVARQQRFMANITARLEHENIHSYRKIVEEYIKEHEVSAVDV 421
Query: 238 AAALAQL 244
AA LA L
Sbjct: 422 AATLALL 428
>gi|222086716|ref|YP_002545250.1| ATP-dependent RNA helicase [Agrobacterium radiobacter K84]
gi|221724164|gb|ACM27320.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
Length = 556
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 119/193 (61%), Gaps = 5/193 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLI 59
MLFSATMP + L+ +YL NP+ +++ + K A+ ++ Y + + +T IL + I
Sbjct: 200 MLFSATMPKTIADLAAEYLTNPVKVEV--SPPGKAADKVEQYVHFVSGQNHKTEILKESI 257
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ G + +VF +TK A+++ L + A+ ++HG+ SQ QRER L GFR G+ VL
Sbjct: 258 SANPDG-RAMVFLRTKHGAEKLMKHLEHVGFAAASIHGNKSQGQRERALKGFRDGEVRVL 316
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARG+DIP V + +Y+LP P+ +VHR GRT RAG++G AI + R +R
Sbjct: 317 VATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEARLLRD 376
Query: 179 LERDVGCKFEFVS 191
+ER +G + S
Sbjct: 377 IERLMGIEIAVAS 389
>gi|323499260|ref|ZP_08104237.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326]
gi|323315648|gb|EGA68682.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326]
Length = 646
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 142/254 (55%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K + ++L P+ ID+ G + ++ K +S L+
Sbjct: 184 VLFSATMPPMLKNIVERFLREPVTIDVAGKN--HTVDKVEQQFWVVKGVEKDEAMSRLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA-- 236
ER E + P + V E+ ++ A L +++E F+ ++L E DA
Sbjct: 361 ERVTKSSMEEIQLPHRDKVAEARLAKLGAELETEKEHKALEKFSELVEKLQESLELDAAT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAILLKRQQGKRP 434
>gi|114046038|ref|YP_736588.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-7]
gi|113887480|gb|ABI41531.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
Length = 622
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 135/252 (53%), Gaps = 6/252 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +K+++ K+L + NI + + + I+ + + +K L ++ V
Sbjct: 184 LFSATMPEQIKRVANKHLKDATNISIAASH--TTVDSIEQRFVQVSQHNKLEALVRVLEV 241
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +T+ E++ L + AS LHGD++Q RER + + GK +L+A
Sbjct: 242 ENTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIA 300
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P D E +VHR GRTGRAG+ G AIL TS + R +R++E
Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIE--EKGTDALA 238
R + + P E V E ++ L + ++F +L + E TD LA
Sbjct: 361 RATNSRISPMKVPSPETVAERRLSRLGEQLAQTMTQDLDFMREAVAQLCQQLEVDTDLLA 420
Query: 239 AALAQLSGFSRP 250
AAL RP
Sbjct: 421 AALLHQVQQERP 432
>gi|336126222|ref|YP_004578178.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
gi|335343939|gb|AEH35221.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
Length = 672
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 149/254 (58%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP VK + +YL +P +D+ G+ ++ +A+ + Y + K ++ L+
Sbjct: 184 VLFSATMPPMVKTIVDRYLRDPARVDVAGS-NQTVAKVEQQYWV-VKGVEKDEAMARLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L S + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLLSRGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQRLIEEKGTDA-- 236
ER + E + P+ + V E+ ++ A L + ++ F ++L + DA
Sbjct: 361 ERVTRSQMEEIQLPMRDKVAEARLIKLGAELEADKGHTALDKFVELIEKLQQSLEIDATT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + +RP
Sbjct: 421 LAAILLKRQQGNRP 434
>gi|304403848|ref|ZP_07385510.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304346826|gb|EFM12658.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 546
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 143/250 (57%), Gaps = 8/250 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP +++L++ +L+NP ++ ++ Q A I I K LS LI
Sbjct: 179 MLFSATMPPNIQRLAQTFLNNPEHVSVIPKQVS--APLIDQAYIEVHERQKFEALSRLID 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + I+F +TKR DE+S AL +++ LHGD+SQ+QR+ + FR G VLV
Sbjct: 237 MESPE-LAIIFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ V +I+++LP DPE++VHR GRTGRAGKEGTA T + + +
Sbjct: 296 ATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPRETDHLHFI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVA--TLNGVHPESVEFFTPTAQRLIEE-KGTDA 236
E+ K P + + +E ++V A ++ V E + + A L+E+ +
Sbjct: 356 EKVTRHKITRKPLPSIAEAIEGK-QRVTAERLIDIVQNEGNQEYKGIAIHLLEQYDSVNL 414
Query: 237 LAAALAQLSG 246
LAAA+ L+G
Sbjct: 415 LAAAIKLLTG 424
>gi|357008100|ref|ZP_09073099.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
elgii B69]
Length = 529
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 137/252 (54%), Gaps = 12/252 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP ++KL++++L NP ++ ++ Q A I I K L LI
Sbjct: 179 MLFSATMPINIQKLAQQFLSNPEHVSVIPKQVS--APLIDQSYIELHERQKFEALCRLID 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ A I+F +TKR DE+S AL +E LHGD+SQ+QR+ + FR G VLV
Sbjct: 237 MEAPD-LAIIFGRTKRRVDELSEALQKRGYTAEGLHGDLSQNQRDNVMRKFRDGSIDVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ V +I+++LP DPE++VHR GRTGRAGKEG A T + + +
Sbjct: 296 ATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGAAYTFVTPREIDHLHFI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLE----SSAEQVVATLNGVHPESVEFFTPTAQRLIEEK-GT 234
E+ K P + + +E +AE+V L + E F A L+E+
Sbjct: 356 EKITRHKISRKPMPSLAEAIEGKQKMTAERV---LEAMQSEDHNQFKGLAISLLEQHDSV 412
Query: 235 DALAAALAQLSG 246
LAAA L+G
Sbjct: 413 HLLAAAFKLLTG 424
>gi|407980113|ref|ZP_11160911.1| ATP-dependent RNA helicase [Bacillus sp. HYC-10]
gi|407413167|gb|EKF34895.1| ATP-dependent RNA helicase [Bacillus sp. HYC-10]
Length = 496
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ NP ++ + E I+ + + K L+ L+
Sbjct: 180 LLFSATMPAPIKRIAERFMTNPEHVKVKAK--EMTVSNIQQFYLDIHERKKFDTLTRLLD 237
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + +IVF +TKR DE++ AL +E +HGD++Q +R L F++G VLV
Sbjct: 238 IQSPE-LSIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGSIDVLV 296
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAG+ G A+ T ++ +R++
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGRTGMAMTFITPREKDMLRAI 356
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ +E + V L + E ++ F+ A L+E+ D++
Sbjct: 357 EQTTKRKMDRMKEPTLDEAIEGQQQVTVDRLRTIISENNLNFYMTAAAELLEDH--DSVT 414
Query: 239 AALAQLSGFSRPPSS 253
A + ++ P +
Sbjct: 415 VVAAAIKMMTKEPDA 429
>gi|225016981|ref|ZP_03706173.1| hypothetical protein CLOSTMETH_00902 [Clostridium methylpentosum
DSM 5476]
gi|224950247|gb|EEG31456.1| hypothetical protein CLOSTMETH_00902 [Clostridium methylpentosum
DSM 5476]
Length = 563
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 108/329 (32%), Positives = 170/329 (51%), Gaps = 20/329 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP + L+++Y +P I++ N+ + + I+ K L +I
Sbjct: 184 ILFSATMPPAILALTKQYQKDPQLIEI--NRKQVTLDNIEQQFYEVPMGRKMDALG-IIL 240
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y +I+F TKR DEV+ L S ++E LHGD+ Q QR + ++ F++G+ +LV
Sbjct: 241 QYHDPALSIIFCNTKRMVDEVTAFLDRSGYSAEGLHGDMKQSQRTKVMDSFKRGRTKILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ NVD +I+Y++P + E +VHR GRTGRAGKEG A+ + S RR V L
Sbjct: 301 ATDVAARGIDVNNVDYVINYDVPQNQEYYVHRIGRTGRAGKEGKAVTI--CSGRRQVDEL 358
Query: 180 E---RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVE-FFTPTAQRLIEEKGTD 235
R + S P +D+ S E VVA + + E ++ A+ L+++
Sbjct: 359 YHIVRMTKSTIKRESLPSGQDIERRSNEGVVARMEQKLAAAEELYYKEVAEELVQKGYNP 418
Query: 236 ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSR--------GFMSARSVMGF 287
AA+A F RP + I + LQ R S F + ++ ++G
Sbjct: 419 TTIAAVALEMAFGRPKTDFPEIKQFRPKAGLQGPRGS-FRKIEINIGRENHIAPNHIVGA 477
Query: 288 LSDVYPTAADEIGKIHIIADDRVQGAVFD 316
+++ + +IGKI I DD+ A+ D
Sbjct: 478 ITERSDLSGRDIGKIEIY-DDKTIVAIPD 505
>gi|253681284|ref|ZP_04862082.1| cold-shock deAd box protein a [Clostridium botulinum D str. 1873]
gi|253562522|gb|EES91973.1| cold-shock deAd box protein a [Clostridium botulinum D str. 1873]
Length = 528
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 173/358 (48%), Gaps = 28/358 (7%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATM + +LS+KY +N I +V Q I+ + +K +LS LI
Sbjct: 182 ILFSATMAKAIIELSKKYQNNAEFIKVVHKQ--LTVPNIEQRYLEVKENNKLEVLSRLID 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +++F TK+ DEV L + +E LHGD+ Q QR+R +N FR G +LV
Sbjct: 240 M-RNPKLSVIFCNTKKRVDEVVSQLQARGYFAEGLHGDMKQPQRDRVMNKFRNGTIEILV 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ +V+ + +Y+LP D E +VHR GRTGRAG+ G A R +R +
Sbjct: 299 ATDVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRSGIAFTFVAGKAIRKLRDI 358
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESV--EFFTPTAQRLIEEKGTDAL 237
ER K + P DV E + + G E ++ L E+ T +
Sbjct: 359 ERYTKTKVKRAEIPSASDVEEFKVNAFLEKVKGTIEEGHLGKYIDYIENLLDEDYATIDI 418
Query: 238 AAALAQLSGFSRPPSSRSLINHEQG---------WVTLQLTRDSAFSRGFMSARSVMGFL 288
AAAL ++S IN E G + + + R++ + AR V+G +
Sbjct: 419 AAALLKMSLGEEKKEEILDINEEIGDTGAEPGMVRLFINIGRNNK-----IQARDVIGAI 473
Query: 289 SDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTI--SKITKLPA 344
+ A IGKI I + ++P+E A+E+L +I NTI KI PA
Sbjct: 474 AGETGIAGKVIGKIDIYD----KFTFVEVPKENAREVL--EIMKNNTIKGKKINIEPA 525
>gi|398379083|ref|ZP_10537228.1| DNA/RNA helicase, superfamily II [Rhizobium sp. AP16]
gi|397723550|gb|EJK84044.1| DNA/RNA helicase, superfamily II [Rhizobium sp. AP16]
Length = 580
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 119/193 (61%), Gaps = 5/193 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLI 59
MLFSATMP + L+ +YL NP+ +++ + K A+ ++ Y + + +T IL + I
Sbjct: 226 MLFSATMPKTIADLAAEYLTNPVKVEV--SPPGKAADKVEQYVHFVSGQNHKTEILKESI 283
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ G + +VF +TK A+++ L + A+ ++HG+ SQ QRER L GFR G+ VL
Sbjct: 284 SANPDG-RAMVFLRTKHGAEKLMKHLEHVGFAAASIHGNKSQGQRERALKGFRDGEVRVL 342
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARG+DIP V + +Y+LP P+ +VHR GRT RAG++G AI + R +R
Sbjct: 343 VATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEARLLRD 402
Query: 179 LERDVGCKFEFVS 191
+ER +G + S
Sbjct: 403 IERLMGIEIAVAS 415
>gi|205372271|ref|ZP_03225085.1| hypothetical protein Bcoam_02010 [Bacillus coahuilensis m4-4]
Length = 499
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 125/217 (57%), Gaps = 10/217 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP ++K++ ++ NP + + E I Y + K IL+ L+
Sbjct: 179 LLFSATMPGPIRKIAENFMTNPETVKV--KSKEMTVSLIDQYFVKAQEREKFDILARLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI--IASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ IVF +TKR DE+S AL SI +E +HGD+SQ +R L F++G+ VL
Sbjct: 237 TQSPE-LAIVFGRTKRRVDELSKAL-SIRGYQAEGIHGDLSQAKRSSVLRKFKEGRIEVL 294
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLDI V + +Y++P DPE++VHR GRTGRAGKEG A+ T + +R
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAMTFVTPREMGYLRI 354
Query: 179 LERDVGCKFEFVSPPVVEDVLES----SAEQVVATLN 211
+E+ + + PP V + LE + E++V +N
Sbjct: 355 VEQTTNKRMTPMRPPSVNEALEGQQRLAKEKLVEAIN 391
>gi|365540016|ref|ZP_09365191.1| ATP-dependent RNA helicase [Vibrio ordalii ATCC 33509]
Length = 674
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 147/254 (57%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP VK + +YL +P +D+ G+ ++ +A+ + Y + + L+
Sbjct: 184 VLFSATMPPMVKTIVDRYLRDPARVDVAGS-NQTVAKVEQQYWVVKGVEKDEAMA--LLL 240
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L S + ALHGDI Q RERT++ +QG +LV
Sbjct: 241 ETEETDASIVFVRTRQDTERLADWLLSRGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQRLIEEKGTDA-- 236
ER + E + P+ + V E+ ++ A L + ++ F ++L + DA
Sbjct: 361 ERVTRSQMEEIQLPMRDKVAEARLIKLGAELEADKGHTALDKFVELIEKLQQSLEIDATT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + +RP
Sbjct: 421 LAAILLKRQQGNRP 434
>gi|284048361|ref|YP_003398700.1| DEAD/DEAH box helicase [Acidaminococcus fermentans DSM 20731]
gi|283952582|gb|ADB47385.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
DSM 20731]
Length = 544
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 138/244 (56%), Gaps = 11/244 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP + +S+KY+ P + + +++ A I Y T R + L
Sbjct: 196 MLFSATMPRPILSISKKYMRAPKVVAI--HKEVVTAPTIDQYYYET-----RDKVDGLCR 248
Query: 61 VY--AKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
+ K I+F +TK+ DE+ +AL T +E LHGD+SQ+QR+R + FR G+ +
Sbjct: 249 ILDTTDDCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSGQVDI 308
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARGLDI N+ ++++++P+D E++VHR GRTGRAG G A+ T + R ++
Sbjct: 309 LVATDVAARGLDIDNITHVVNFDVPSDSESYVHRIGRTGRAGNTGVALTFITPREFRQLK 368
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV-HPESVEFFTPTAQRLIEEKGTDA 236
+ER + K + P VLE EQ+V+ + + + + + P + L ++
Sbjct: 369 LIERSIKTKIIRGTLPTDASVLERQREQIVSKMQTILEQDRYQDYLPIVETLEKDYDVQD 428
Query: 237 LAAA 240
+AAA
Sbjct: 429 IAAA 432
>gi|116493289|ref|YP_805024.1| superfamily II DNA/RNA helicase [Pediococcus pentosaceus ATCC
25745]
gi|116103439|gb|ABJ68582.1| Superfamily II DNA and RNA helicase [Pediococcus pentosaceus ATCC
25745]
Length = 526
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 134/245 (54%), Gaps = 9/245 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +KK+ K++ +P I + E A+ + Y + + K IL+ ++
Sbjct: 178 LLFSATMPAPIKKIGVKFMTDPKQITV--KSKELTADLVDQYYVRSKEFEKFDILTRVLD 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V A ++F +TKR DEVS L T + +HGD++Q +R L FR+G+ +LV
Sbjct: 236 VQAPK-LAVIFGRTKRRVDEVSKGLVTRGYNAAGIHGDLTQQRRMSILRQFREGQLDILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++P DPE++VHR GRTGRAG GT++ T+ + +R +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGATGTSVTFVTNWEMDYLRDV 354
Query: 180 ERDVGCKFEFVSPPVVEDVL---ESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
E + + PP E+ + AEQ + L V V F L+E+
Sbjct: 355 EHLTKKRLLPMKPPTEEEAFAGRAAMAEQSIEEL--VQKTDVAKFEEQVDHLLEQHDAKT 412
Query: 237 LAAAL 241
L AAL
Sbjct: 413 LVAAL 417
>gi|336115431|ref|YP_004570198.1| DEAD/DEAH box helicase [Bacillus coagulans 2-6]
gi|335368861|gb|AEH54812.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 2-6]
Length = 475
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 137/246 (55%), Gaps = 5/246 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP ++K++ ++++NP + + E I+ Y I K +LS L+
Sbjct: 179 MLFSATMPDPIRKIAERFMNNPELVRV--KAKEMTVPSIEQYYIKVQEREKFDVLSRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V + IVF +TKR DE++ ALT +E +HGD+SQ +R L F+ GK VLV
Sbjct: 237 VQSPD-LAIVFGRTKRRVDELANALTLRGYLAEGIHGDLSQAKRLSVLRKFKDGKIDVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++P DPE++VHR GRTGRAG+EG A+ T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGREGMAMTFVTPREMGYLKTV 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALA 238
E+ + + PP ++ E + + E +++ + A+ L+ E +
Sbjct: 356 EQTTKKRMLPMRPPTWDEAFEGQQRVTMERIGETIKEGNIDEYMSVAKELLAEYDPAEVT 415
Query: 239 AALAQL 244
AA +L
Sbjct: 416 AAALKL 421
>gi|113971754|ref|YP_735547.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-4]
gi|113886438|gb|ABI40490.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
Length = 622
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 135/252 (53%), Gaps = 6/252 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +K+++ K+L + NI + + + I+ + + +K L ++ V
Sbjct: 184 LFSATMPEQIKRVANKHLKDATNISIAASH--TTVDSIEQRFVQVSQHNKLEALVRVLEV 241
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +T+ E++ L + AS LHGD++Q RER + + GK +L+A
Sbjct: 242 ENTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDILIA 300
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P D E +VHR GRTGRAG+ G AIL TS + R +R++E
Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIE--EKGTDALA 238
R + + P E V E ++ L + ++F +L + E TD LA
Sbjct: 361 RATNSRISPMKVPSPETVAERRLSRLGEQLAQTMTQDLDFMREAVAQLCQQLEVDTDLLA 420
Query: 239 AALAQLSGFSRP 250
AAL RP
Sbjct: 421 AALLHQVQQERP 432
>gi|117922031|ref|YP_871223.1| DEAD/DEAH box helicase [Shewanella sp. ANA-3]
gi|117614363|gb|ABK49817.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
Length = 619
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 135/252 (53%), Gaps = 6/252 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +K+++ K+L + NI + + + I+ + + +K L ++ V
Sbjct: 184 LFSATMPEQIKRVANKHLKDATNISIAASH--TTVDSIEQRFVQVSQHNKLEALVRVLEV 241
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +T+ E++ L + AS LHGD++Q RER + + GK +L+A
Sbjct: 242 ENTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDILIA 300
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P D E +VHR GRTGRAG+ G AIL TS + R +R++E
Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIE--EKGTDALA 238
R + + P E V E ++ L + ++F +L + E TD LA
Sbjct: 361 RATNSRISPMKVPSPETVAERRLSRLGEQLAQTMTQDLDFMREAVAQLCQQLEVDTDLLA 420
Query: 239 AALAQLSGFSRP 250
AAL RP
Sbjct: 421 AALLHQVQQERP 432
>gi|20092752|ref|NP_618827.1| ATP-dependent RNA helicase [Methanosarcina acetivorans C2A]
gi|19918045|gb|AAM07307.1| ATP-dependent RNA helicase [Methanosarcina acetivorans C2A]
Length = 555
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 147/253 (58%), Gaps = 17/253 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI--KLYAISTTATSKRTILSDL 58
+ FSATMP + + +KY+ N ++ + + E+LA + ++Y K LS +
Sbjct: 183 LFFSATMPKPILGIVKKYMQNYEHVTI---EKEELAAKLTEQIY-FEVQENDKFEALSRI 238
Query: 59 ITV----YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQG 113
I + Y +VF +TK D +++ L+ ++ALHGD+SQ +RE+ LN FR+
Sbjct: 239 IDIEDEFYG-----LVFCRTKTDTGQLAQKLSDRGYEADALHGDLSQQEREKILNKFRKQ 293
Query: 114 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 173
K VLVATDVAARG+DI ++ +I+Y LP DPE++VHR GRTGRAGK+GTAI TS++
Sbjct: 294 KINVLVATDVAARGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEF 353
Query: 174 RTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEK 232
R + +++ + + P ++DV+++ +V A L + E ++RL+EE
Sbjct: 354 RRLTYIKKTSKSEMKKGRIPEIKDVIKAKRARVKAELEETIKTEEYGDCLEMSERLLEEY 413
Query: 233 GTDALAAALAQLS 245
+ + AAL + +
Sbjct: 414 PAEKILAALLKYT 426
>gi|407476475|ref|YP_006790352.1| ATP-dependent RNA helicase CshA [Exiguobacterium antarcticum B7]
gi|407060554|gb|AFS69744.1| ATP-dependent RNA helicase CshA [Exiguobacterium antarcticum B7]
Length = 539
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 143/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP ++K++ +++ P +I + E E I I K +L LI
Sbjct: 179 LLFSATMPQQIRKIADRFMTTPTHIKV--KAKEMTVENIDQSFIELKENQKFDVLCRLID 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +I+F +TK+ DE++ L ++ LHGD++Q +R++ + F++G +LV
Sbjct: 237 TDSPE-LSIIFGRTKKRVDEMTEGLVQRGYTADGLHGDLTQAKRDQVIRRFKKGTIDILV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G+AI T + ++++
Sbjct: 296 ATDVAARGLDITGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGSAITFVTPREFGQIKTI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
ER K P ++++LE + + L V ++ + +T AQ L+EE +A+
Sbjct: 356 ERVTNKKMSRRHAPTLDEILEGNLKLAAQELIKRVEAKNSQEYTTLAQELLEE--YEAVE 413
Query: 239 AALAQLSGFSRPPSS 253
A L G ++ P +
Sbjct: 414 LISAALKGLTKEPDA 428
>gi|329847732|ref|ZP_08262760.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
gi|328842795|gb|EGF92364.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
Length = 606
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 113/184 (61%), Gaps = 8/184 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+ FSATMP + L+ + L +P +++ + AE + + A KR +LS++
Sbjct: 184 LFFSATMPKEIGVLASELLTDPKRVEIT--PEATTAERVSQQVLFIEAQRKRALLSEM-- 239
Query: 61 VYAKG--GKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
YA +T+VFT+TKR AD V+ L + + + A+HGD +Q QRER L FR GK
Sbjct: 240 -YADAVLERTLVFTRTKRSADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFRAGKVRA 298
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATD+AARG+D+ NV +I+YELPN E +VHR GRT RAGK G +I + +RR ++
Sbjct: 299 LVATDIAARGIDVDNVSHVINYELPNVAEAYVHRIGRTARAGKSGVSITLCADDERRLLK 358
Query: 178 SLER 181
+ER
Sbjct: 359 DIER 362
>gi|317152644|ref|YP_004120692.1| DEAD/DEAH box helicase [Desulfovibrio aespoeensis Aspo-2]
gi|316942895|gb|ADU61946.1| DEAD/DEAH box helicase domain protein [Desulfovibrio aespoeensis
Aspo-2]
Length = 551
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 139/245 (56%), Gaps = 5/245 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP V +++++++ + +L+ + EK + A S R +
Sbjct: 180 LLFSATMPHEVMRIAKEFMGD---YELITVKAEKNDIPLTKQVFHEVADSDRFEALCRVV 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+VFT+T+ DAD V+ LT +E +HGD+SQ +RE L F++ T+LV
Sbjct: 237 DAEPDFYGLVFTRTRADADRVASRLTERGYPAEPIHGDLSQARREEILGRFKKRLVTILV 296
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+P++ ++++ LP DP+TFVHR+GRTGRAGKEG AI + S+ R + +
Sbjct: 297 ATDVAARGIDVPDLTHVVNFALPQDPQTFVHRTGRTGRAGKEGVAISLIAPSEFRRLMFI 356
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEF-FTPTAQRLIEEKGTDALA 238
+ G P + DV+ S ++V L+G+ E + P A+ L+E + + +
Sbjct: 357 TKSSGIDITKAKLPCIHDVIYSKKSRMVDGLDGIIQEEAHTPYLPMARDLLEGREPEDVV 416
Query: 239 AALAQ 243
AAL +
Sbjct: 417 AALLK 421
>gi|421893868|ref|ZP_16324361.1| DEAD-box ATP-dependent RNA helicase CshA [Pediococcus pentosaceus
IE-3]
gi|385273353|emb|CCG89733.1| DEAD-box ATP-dependent RNA helicase CshA [Pediococcus pentosaceus
IE-3]
Length = 526
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 135/245 (55%), Gaps = 9/245 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +KK+ K++ +P I + E A+ + Y + + K IL+ ++
Sbjct: 178 LLFSATMPAPIKKIGVKFMTDPKQITV--KSKELTADLVDQYYVRSKEFEKFDILTRVLD 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTVLV 119
V A ++F +TKR DEVS L + + A +HGD++Q +R L FR+G+ +LV
Sbjct: 236 VQAPK-LAVIFGRTKRRVDEVSKGLVTRGYNAAGIHGDLTQQRRMSILRQFREGQLDILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++P DPE++VHR GRTGRAG GT++ T+ + +R +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGATGTSVTFVTNWEMDYLRDV 354
Query: 180 ERDVGCKFEFVSPPVVEDVL---ESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
E + + PP E+ + AEQ + L V V F L+E+
Sbjct: 355 EHLTKKRLLPMKPPTEEEAFAGRAAMAEQSIEEL--VQKTDVAKFEEQVDHLLEQHDAKT 412
Query: 237 LAAAL 241
L AAL
Sbjct: 413 LVAAL 417
>gi|262274077|ref|ZP_06051889.1| cold-shock DEAD-box protein A [Grimontia hollisae CIP 101886]
gi|262221887|gb|EEY73200.1| cold-shock DEAD-box protein A [Grimontia hollisae CIP 101886]
Length = 618
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 145/254 (57%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP VK++ ++L P ID+ G+ + E ++ K +S L+
Sbjct: 184 VLFSATMPPMVKEIVDRFLREPARIDVAGSN--RTVEKVEQQFWVVKGVEKDEAMSRLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L++ + ALHGDI Q RERT+ ++G +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVEHIKRGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG+ G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRAGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GVHPESVEFFTPTAQRLIEEKGTD--A 236
ER + E + P+ + V E+ ++ A L+ ES+E F ++L E+ D
Sbjct: 361 ERVTSTRMEEIQLPLRDKVAEARLARLAADLHEQKESESLEAFVGLIEKLQEQIDVDTAT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L Q RP
Sbjct: 421 LAAMLLQRQQGKRP 434
>gi|375263387|ref|YP_005025617.1| cold-shock DEAD-box protein A [Vibrio sp. EJY3]
gi|369843814|gb|AEX24642.1| cold-shock DEAD-box protein A [Vibrio sp. EJY3]
Length = 639
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 143/254 (56%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +KK+ ++L +P+ +D+ G + ++ K +S L+
Sbjct: 184 VLFSATMPPMLKKIVERFLRDPVTVDVAGKN--HTVDKVQQQFWVVKGVEKDEAMSRLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTD--A 236
ER E + P+ + V E+ Q+ A L +S++ F ++L D
Sbjct: 361 ERVTKSSMEEIQLPLRDQVAEARLAQLGAELEAEKEHKSLDKFAELVEKLQTSLEIDPAM 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAMLLKRQQGKRP 434
>gi|116333167|ref|YP_794694.1| superfamily II DNA/RNA helicase [Lactobacillus brevis ATCC 367]
gi|116098514|gb|ABJ63663.1| Superfamily II DNA and RNA helicase [Lactobacillus brevis ATCC 367]
Length = 523
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 142/245 (57%), Gaps = 9/245 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP +K++ +++ +P ++ + E + I + + + K +++
Sbjct: 178 MLFSATMPPEIKRVGVQFMKDPKHVKIKAK--ELTTDLIDQFYVRSRDFEKFDVMTRFFD 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTVLV 119
V + TIVFT+TKR DE++ L + + A +HGD++Q +R + +N FR GK +LV
Sbjct: 236 VQSPD-LTIVFTRTKRRVDEIASGLEARGYNAAGIHGDLTQKRRTQIMNDFRHGKLDILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+DI +V + +Y++P DP+++VHR GRTGRAGK G ++ T ++ +R +
Sbjct: 295 ATDVAARGIDINDVTHVYNYDIPQDPDSYVHRVGRTGRAGKHGVSMTFVTPNEMDYLREI 354
Query: 180 ERDVGCKFEFVSPPVVEDVLES---SAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
E+ + + PP E+ S +A++ +A L V+ E + A+ L+ E +
Sbjct: 355 EKLTKVRMLPLKPPSDEEAFVSQLGAAKETIADL--VNKADKEKYAKAAESLLNEYDAED 412
Query: 237 LAAAL 241
L AAL
Sbjct: 413 LVAAL 417
>gi|407695316|ref|YP_006820104.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax dieselolei
B5]
gi|407252654|gb|AFT69761.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax dieselolei
B5]
Length = 559
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 130/223 (58%), Gaps = 8/223 (3%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++++ ++L +P I + D GI+ S + +K + ++
Sbjct: 185 LFSATMPNVIRRVAERHLKSPKWIRI--ENDTTTKSGIRQRFWSVSGLNKLDAMCRILEG 242
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G IVF +TK+ E++ L + +EAL+GDI Q QRE+T+ R+G+F +L+A
Sbjct: 243 ETHDG-VIVFARTKQSTLELAEQLQRRGLRAEALNGDIPQAQREKTVARLREGRFDLLIA 301
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDV ARGLD+P + +I+Y++P D E +VHR GRTGRAG+ G AIL + +R +R++E
Sbjct: 302 TDVVARGLDVPRISHVINYDMPADTEAYVHRIGRTGRAGRNGEAILFVSHRERGMLRAIE 361
Query: 181 RDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVE 219
R G E + P V+ + L EQ+VA L H E E
Sbjct: 362 RATGQSLESMDLPSVDALNSKRLAKLQEQLVAGLESKHREEAE 404
>gi|124026185|ref|YP_001015301.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. NATL1A]
gi|123961253|gb|ABM76036.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
NATL1A]
Length = 589
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 136/241 (56%), Gaps = 24/241 (9%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ-DEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSATMPS +++LS+KYL++P I + + E+L I+ IS K L ++
Sbjct: 214 VLFSATMPSEIRRLSKKYLNSPAEITIKATELKERL---IRQRYISVQNVYKVNALQRVL 270
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASE---------ALHGDISQHQRERTLNGF 110
++ G I+F +TK A+T ++A + L+GDI Q+QRERT+
Sbjct: 271 EAVSEEG-VIIFARTK--------AITIVVAEKLESYGYNVAVLNGDIPQNQRERTVERL 321
Query: 111 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 170
RQG +LVATDVAARGLD+ + L+I+Y++P D E +VHR GRTGRAG+ G AIL
Sbjct: 322 RQGSINILVATDVAARGLDVDRIGLVINYDMPFDREAYVHRIGRTGRAGRNGEAILFVNP 381
Query: 171 SQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIE 230
+R + +LER VG E + P + + + +++ A L + S E P ++E
Sbjct: 382 RERSFLSNLERAVGQPIEKMDIPDNDLINNNRIKKLQAKL--IKAASTERDNPEEANILE 439
Query: 231 E 231
E
Sbjct: 440 E 440
>gi|440747418|ref|ZP_20926677.1| Cold-shock DEAD-box protein A [Mariniradius saccharolyticus AK6]
gi|436484338|gb|ELP40342.1| Cold-shock DEAD-box protein A [Mariniradius saccharolyticus AK6]
Length = 607
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 125/203 (61%), Gaps = 7/203 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+ FSATMP + L++KY ++P + ++ + E E I + K ++S L+
Sbjct: 183 VFFSATMPKPILDLTKKYQNDPEIVKVL--KKELTVENISQVYYEVKPSLKLELMSRLMN 240
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + ++VF TKR DEV+ L + I +EALHGD+SQ QR + + FR+G +VLV
Sbjct: 241 L-NQFNLSVVFCNTKRITDEVTEELMARGIQAEALHGDLSQAQRSKVMGKFRKGHVSVLV 299
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR--RTVR 177
ATDVAARG+D+ +V+ + +Y+LP D E +VHR GRTGRAGK GTAI F + +R + ++
Sbjct: 300 ATDVAARGIDVNDVEAVFNYDLPLDEENYVHRIGRTGRAGKSGTAI-SFVTGRRDMQKLK 358
Query: 178 SLERDVGCKFEFVSPPVVEDVLE 200
LER + + PP V D++E
Sbjct: 359 DLERFIKTNINRMDPPSVADLVE 381
>gi|87302313|ref|ZP_01085138.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701]
gi|87283238|gb|EAQ75194.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701]
Length = 645
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 121/204 (59%), Gaps = 8/204 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEG--IKLYAISTTATSKRTILSDL 58
+LFSATMPS +++LSRKYL NP + + +K AE I+ + K L+ +
Sbjct: 263 VLFSATMPSEIRRLSRKYLQNPAEVTI----QQKGAENSTIRQRHLVVHGAQKLEALTRV 318
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTV 117
+ + G I+F +TK VS AL A L+GD+ Q+QRERT+ R G+ V
Sbjct: 319 LEAESSEG-VIIFARTKAITLTVSEALEQQGYDVAVLNGDVPQNQRERTVERLRSGQVNV 377
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARGLD+ + L+I+Y++P D E +VHR GRTGRAG++G AIL T +RR +
Sbjct: 378 LVATDVAARGLDVDRITLVINYDIPFDSEAYVHRIGRTGRAGRQGDAILFLTPRERRFLG 437
Query: 178 SLERDVGCKFEFVSPPVVEDVLES 201
LER VG + P D+ +S
Sbjct: 438 GLERAVGKAITPMEVPTNADINQS 461
>gi|225849264|ref|YP_002729428.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644065|gb|ACN99115.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 397
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 120/192 (62%), Gaps = 3/192 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP + +L++++L+ V DE E IK +K L ++++
Sbjct: 182 LLFSATMPKEILELAQEFLNEDYQTIKV-KPDEITVEKIKQIIYRVDPKNKFNKLIEVLS 240
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ KTI+FTQTK +AD++S L+ + A+HGD SQ +RE L+ FR GK +LV
Sbjct: 241 -QNQAEKTIIFTQTKLEADQLSEDLSKEGFSVSAIHGDFSQKKRETVLHNFRTGKLKILV 299
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V+L+I+Y LP + E++VHR GRTGRAGKEGTAI + T S+ + ++ +
Sbjct: 300 ATDVAARGLDIKGVELVINYGLPKNAESYVHRIGRTGRAGKEGTAISIPTPSEDKYLQQI 359
Query: 180 ERDVGCKFEFVS 191
+ E ++
Sbjct: 360 LQKTKANIEVIN 371
>gi|425734748|ref|ZP_18853065.1| DEAD/DEAH box helicase [Brevibacterium casei S18]
gi|425480684|gb|EKU47848.1| DEAD/DEAH box helicase [Brevibacterium casei S18]
Length = 592
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 126/205 (61%), Gaps = 4/205 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ + +L+ KYL++P + + + I+ + + K L+ ++ V
Sbjct: 193 LFSATMPTSIHRLTGKYLNDPEEVRVAAKS--QTGSNIRQRYLMVQHSHKLDALTRILEV 250
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +TK+ +E++ L + + A++GDI Q RERT+ R+GK +LVA
Sbjct: 251 EEYDG-IIMFVRTKQATEELAEKLRARGFKASAINGDIPQQARERTVEMLREGKIDILVA 309
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + L+++Y++P+D E++VHR GRTGRAG+ G AIL T ++R + S+E
Sbjct: 310 TDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRSGEAILFITPREQRLLGSIE 369
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQ 205
R K E ++ P VE++ + E+
Sbjct: 370 RATKQKVEPLTLPSVEELTNTRVEK 394
>gi|373856036|ref|ZP_09598781.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
gi|372453873|gb|EHP27339.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
Length = 481
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 119/199 (59%), Gaps = 4/199 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
M+FSAT+P+ V+ L +Y++NP++I++ + + I+ I K T+L D +T
Sbjct: 181 MVFSATLPTDVENLCHEYMENPIHIEIAASG--VTTDTIEHSLIEVKEEEKITLLKD-VT 237
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V ++F +TK D V AL + + E LHG + Q R ++GF+ G F LV
Sbjct: 238 VVENPDSCLIFCRTKEHVDSVYTALEAANYSCERLHGGLDQEDRFAVMDGFKMGNFRYLV 297
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+DI NV L+I+Y++P + E +VHR+GRTGRAG +G AI T + + VR +
Sbjct: 298 ATDVAARGIDIDNVTLVINYDVPMEKEGYVHRTGRTGRAGNKGKAITFATPYEGKFVRGI 357
Query: 180 ERDVGCKFEFVSPPVVEDV 198
ER +G + E P E+V
Sbjct: 358 ERYIGFEIEKAEAPGSEEV 376
>gi|340794810|ref|YP_004760273.1| hypothetical protein CVAR_1849 [Corynebacterium variabile DSM
44702]
gi|340534720|gb|AEK37200.1| hypothetical protein CVAR_1849 [Corynebacterium variabile DSM
44702]
Length = 732
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 142/250 (56%), Gaps = 8/250 (3%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMPS +++LS++YL++P + Q + + I + + +K L+ ++ V
Sbjct: 248 LFSATMPSAIRRLSKQYLNDPQEYTVKSEQ--RTGDNITQDYLMVSHRNKLDALTRILEV 305
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK D +E++ L + + A++GDI+Q+QRERT++ + G+ +LVA
Sbjct: 306 -TEFDAMIIFVRTKSDTEELADKLRARGFEAAAINGDIAQNQRERTVDQLKDGRLDILVA 364
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++P D E++VHR GRTGRAG+ G AIL T +RR ++++E
Sbjct: 365 TDVAARGLDVDRITHVFNYDIPRDTESYVHRIGRTGRAGRTGRAILFVTPRERRLLKNIE 424
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKG---TDA 236
R + P V++V E+ + ++ + V+ F E TD
Sbjct: 425 RATKSHPNEIQLPGVDEVNEARKNKFFTSITEARKGKQVDIFRELVTEYAEANDVTPTDI 484
Query: 237 LAAALAQLSG 246
AA A+L G
Sbjct: 485 AAALAAKLQG 494
>gi|72382486|ref|YP_291841.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Prochlorococcus marinus str. NATL2A]
gi|72002336|gb|AAZ58138.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str.
NATL2A]
Length = 589
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 136/241 (56%), Gaps = 24/241 (9%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ-DEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSATMPS +++LS+KYL++P I + + E+L I+ IS K L ++
Sbjct: 214 VLFSATMPSEIRRLSKKYLNSPAEITIKATELKERL---IRQRYISVQNVYKVNALQRVL 270
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASE---------ALHGDISQHQRERTLNGF 110
++ G I+F +TK A+T ++A + L+GDI Q+QRERT+
Sbjct: 271 EAVSEEG-VIIFARTK--------AITIVVAEKLESYGYNVAVLNGDIPQNQRERTVERL 321
Query: 111 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 170
RQG +LVATDVAARGLD+ + L+I+Y++P D E +VHR GRTGRAG+ G AIL
Sbjct: 322 RQGSINILVATDVAARGLDVDRIGLVINYDMPFDREAYVHRIGRTGRAGRNGEAILFVNP 381
Query: 171 SQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIE 230
+R + +LER VG E + P + + + +++ A L + S E P ++E
Sbjct: 382 RERSFLSNLERAVGQPIEKMDIPDNDLINNNRIKKLQAKL--IKAASTERDNPEEANILE 439
Query: 231 E 231
E
Sbjct: 440 E 440
>gi|332881684|ref|ZP_08449332.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|357044670|ref|ZP_09106319.1| DEAD/DEAH box helicase [Paraprevotella clara YIT 11840]
gi|332680323|gb|EGJ53272.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|355532477|gb|EHH01861.1| DEAD/DEAH box helicase [Paraprevotella clara YIT 11840]
Length = 679
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 135/233 (57%), Gaps = 6/233 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATM ++++S+KYL I +VG+++E AE + A K L ++
Sbjct: 181 LLFSATMSREIERISKKYLREAKEI-VVGSRNEG-AETVNHVYYMVHAKDKYLALKRIVD 238
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y K I+F +T+ + EV+ L +++LHGD+SQ QR+ T+ FRQ + LV
Sbjct: 239 YYPKI-YAIIFCRTRMETQEVADKLIQDGYNADSLHGDLSQQQRDLTMQKFRQHRVQFLV 297
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ ++ +I+Y +P+D E + HRSGRTGRAGK+GT+I + + +R +R +
Sbjct: 298 ATDVAARGLDVEDLTHVINYGMPDDIENYTHRSGRTGRAGKKGTSICIVHTRERSKIREI 357
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH--PESVEFFTPTAQRLIE 230
E+ +G +F P +++ +V+ + V E +E F P R +E
Sbjct: 358 EKVIGKEFVKGEMPSGKEICAKQLYKVIDDIERVEVDEEEIEQFLPEVYRKLE 410
>gi|398384210|ref|ZP_10542256.1| DNA/RNA helicase, superfamily II [Sphingobium sp. AP49]
gi|397723230|gb|EJK83737.1| DNA/RNA helicase, superfamily II [Sphingobium sp. AP49]
Length = 578
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 106/337 (31%), Positives = 165/337 (48%), Gaps = 18/337 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP + ++++Y + L I VG +E+ I AI+ + + +L+
Sbjct: 182 LLFSATMPKPIVAMAKRYQSDALRISTVG--EERGHGDISYQAITVAPSDIENAVVNLLR 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y + I+F T+ + + +LT A+ AL G+ SQ++R L R + V V
Sbjct: 240 -YHEAETAILFCATRDNVRHLHSSLTERGFAAVALSGEHSQNERNHALQALRDKRARVCV 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+P++ L++H ELP D ET HRSGRTGRAGK+GTA+L+ +RR V S+
Sbjct: 299 ATDVAARGIDLPSLTLVVHVELPRDAETMQHRSGRTGRAGKKGTAVLIVPYPRRRRVESM 358
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
R E+ +PP E +LE ++ +TL E E L+ EK +AA
Sbjct: 359 LRGAKIPVEWGTPPSKEAILEQDNARLRSTLME-KAELDEADWALGAELLAEKSAKEIAA 417
Query: 240 ALAQLSGFSRPPSSRSLINHEQ---------GWVTLQLTRDSAFSRGFMSARSVMGFLSD 290
L + + S P L E G+ Q R R R ++ +
Sbjct: 418 MLVKSARASLPAPEELLDRSEAPPRQDGPRPGFEDTQWFRMDIGRRQNADPRWILPLICR 477
Query: 291 VYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 327
+ +IG I I ++ +F++P+ IA L+
Sbjct: 478 RGHVSRGDIGAIRITTNE----TMFEIPKAIASRFLS 510
>gi|68536452|ref|YP_251157.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
gi|68264051|emb|CAI37539.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
Length = 713
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 129/205 (62%), Gaps = 4/205 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMPS +++LS++YL +P I + Q + +E I+ + + K L+ ++ +
Sbjct: 253 LFSATMPSGIRRLSKQYLSDPREITVKATQ--RTSENIEQDYLLVSHRDKLDALTRILEI 310
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +E++ L + + A++GDI Q+ RERT++ + G+ +LVA
Sbjct: 311 -TEFEAMIMFVRTKNETEELAERLRARGFNAAAINGDIPQNLRERTVDQLKDGRLDILVA 369
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++P+D E++VHR GRTGRAG++G AIL T +RR ++S+E
Sbjct: 370 TDVAARGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAGRKGRAILFVTPRERRLLKSIE 429
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQ 205
R + + P V+ V E+ E+
Sbjct: 430 RATKSRLNEIELPTVDAVNEARKEK 454
>gi|149186749|ref|ZP_01865060.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
gi|148829657|gb|EDL48097.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
Length = 455
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 122/215 (56%), Gaps = 12/215 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+ FSATMP +++L KY NP+ + + + AE I Y K+T+L +++
Sbjct: 184 LFFSATMPKQIQELVGKYCRNPVKVSV--TPESTTAERIDQYLFMVQQDEKQTLLEMILS 241
Query: 61 ----VYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKF 115
V K + ++F +TK D + L S I + A+HG+ SQ QRER L+ F++ K
Sbjct: 242 ERHQVPGKFERVLIFARTKHGCDRIVKKLGQSGIPANAIHGNKSQPQRERALDEFKRAKT 301
Query: 116 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT 175
+LVATDVAARG+DIP V +++YELPN PE +VHR GRT RAG++G AI +R
Sbjct: 302 PILVATDVAARGIDIPGVSHVLNYELPNVPEQYVHRIGRTARAGRDGVAIAFCAEDERDY 361
Query: 176 VRSLERDVGCKFEFVSPP-----VVEDVLESSAEQ 205
++ + + +FE + P VVE V + EQ
Sbjct: 362 LKDIRKKTDAEFERLPLPDNFRAVVEGVGPTKREQ 396
>gi|374581781|ref|ZP_09654875.1| DNA/RNA helicase, superfamily II [Desulfosporosinus youngiae DSM
17734]
gi|374417863|gb|EHQ90298.1| DNA/RNA helicase, superfamily II [Desulfosporosinus youngiae DSM
17734]
Length = 535
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 126/207 (60%), Gaps = 4/207 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP ++KL++ Y++ P ++ + ++DE I T + K L +I
Sbjct: 185 LLFSATMPPGIRKLAQTYMNAPRSVTV--SRDELTVPLIDQVFYETRESIKVDALGRIID 242
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
G+ I+F +TKR DE+ ++L + ++ALHGD+SQ QR+R + FR GK +LV
Sbjct: 243 T-EDIGQGIIFCRTKRGVDELVVSLEARGYFADALHGDLSQQQRDRVMKRFRDGKTELLV 301
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI NV +I++++P DP ++VHR GRTGR G++G AI + + + R +R +
Sbjct: 302 ATDVAARGLDINNVTHVINFDIPQDPVSYVHRIGRTGRVGRKGQAITLISPKEYRQLRLI 361
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQV 206
E + + P + D+ E AE +
Sbjct: 362 ENLIKTRIRRQELPSLADISERQAENL 388
>gi|116671594|ref|YP_832527.1| DEAD/DEAH box helicase [Arthrobacter sp. FB24]
gi|116611703|gb|ABK04427.1| ATP-dependent RNA helicase CsdA [Arthrobacter sp. FB24]
Length = 747
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 112/351 (31%), Positives = 183/351 (52%), Gaps = 36/351 (10%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMPS ++++S++YL+NP I V ++ A + Y + K L+ ++ V
Sbjct: 275 LFSATMPSQIRRMSKQYLNNPAEIS-VKSKTTTGANTRQRY-LQVMGPHKLDALTRILEV 332
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I F +TK ++++ L S + A++GDI Q QRERT++ ++G+ +LVA
Sbjct: 333 EEFDG-VIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDILVA 391
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P+D E++VHR GRTGRAG+ G AIL T ++ +RS+E
Sbjct: 392 TDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRSIE 451
Query: 181 RDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
+ E + P E V L AE++ TL E V F EE A
Sbjct: 452 KATRQPVEQMHLPTAETVNTLRLGKFAERITETLAS---EDVAPFRDLISSYEEEHNVPA 508
Query: 237 --LAAALAQLSGFSRP------PSSRSLINHEQG-------WVTLQLTRDSAFSRGFMSA 281
+AAALA ++ +P P++ E+ T LT +A R +
Sbjct: 509 SEIAAALAIMAQGGQPLLVKELPAAPEFQKRERSKDGFGSRGPTRTLTEGNATYRIAVGR 568
Query: 282 R------SVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELL 326
R S++G +++ ++ +IG I I +D ++ +LP +++ E L
Sbjct: 569 RQRVMPGSIVGAIANEGGISSAQIGGIDIRSDH----SLVELPADLSPEQL 615
>gi|260577582|ref|ZP_05845521.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
43734]
gi|258604306|gb|EEW17544.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
43734]
Length = 707
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 129/205 (62%), Gaps = 4/205 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMPS +++LS++YL +P I + Q + +E I+ + + K L+ ++ +
Sbjct: 253 LFSATMPSGIRRLSKQYLSDPREITVKATQ--RTSENIEQDYLLVSHRDKLDALTRILEI 310
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +E++ L + + A++GDI Q+ RERT++ + G+ +LVA
Sbjct: 311 -TEFEAMIMFVRTKNETEELAERLRARGFNAAAINGDIPQNLRERTVDQLKDGRLDILVA 369
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++P+D E++VHR GRTGRAG++G AIL T +RR ++S+E
Sbjct: 370 TDVAARGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAGRKGRAILFVTPRERRLLKSIE 429
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQ 205
R + + P V+ V E+ E+
Sbjct: 430 RATKSRLNEIELPTVDAVNEARKEK 454
>gi|227528896|ref|ZP_03958945.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
ATCC 49540]
gi|227351170|gb|EEJ41461.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
ATCC 49540]
Length = 501
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 142/258 (55%), Gaps = 13/258 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +KK+ K++ +P + + E + + Y + K I++ LI
Sbjct: 178 LLFSATMPPEIKKIGVKFMTDPTMVRIKAK--ELTTDLVDQYYVKARDYEKFDIMTRLID 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTVLV 119
V TIVF +TKR DE+S L + + A +HGD+SQ +R + + F+ G+ +LV
Sbjct: 236 V-QDPDLTIVFGRTKRRVDELSRGLVARGYNAAGIHGDLSQDRRTKIMKKFKHGELDILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++P+DP+++VHR GRTGRAG G ++ T ++ +R +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLREI 354
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP----ESVEFFTPTAQRLIEEKGTD 235
E+ + + PP E+ + QV + N + +S E + A++L+
Sbjct: 355 EKLTRVRMLPLKPPTAEEAFKG---QVASAFNDIDELISQDSTERYQEAAEKLLATHDAT 411
Query: 236 ALAAALAQLSGFSRPPSS 253
L AAL L+ ++ P+S
Sbjct: 412 DLVAAL--LNEMTKEPAS 427
>gi|218248985|ref|YP_002374356.1| DEAD/DEAH box helicase [Cyanothece sp. PCC 8801]
gi|257062070|ref|YP_003139958.1| DEAD/DEAH box helicase [Cyanothece sp. PCC 8802]
gi|218169463|gb|ACK68200.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8801]
gi|256592236|gb|ACV03123.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8802]
Length = 485
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 136/247 (55%), Gaps = 10/247 (4%)
Query: 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY 62
FSATMP +++L ++L +P+ + + Q LY + SK L ++ +
Sbjct: 182 FSATMPREIRELVNQFLKSPVTVAVEQPQAAPSKIEQHLYNVPR-GWSKLKALQPILELE 240
Query: 63 AKGGKTIVFTQTKRDADEVSLALTSIIAS-EALHGDISQHQRERTLNGFRQGKFTVLVAT 121
A I+F +TK+ A E++ L S + HG++SQ QRER + FR+GK ++VAT
Sbjct: 241 APES-AIIFVRTKQTAAELTCKLQEAGQSVDEYHGNLSQSQRERLVYRFREGKIKLVVAT 299
Query: 122 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 181
D+AARGLD+ N+ +I+Y+LP++ ET++HR GRTGRAGK GTAI + RR ++ +ER
Sbjct: 300 DIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRMIKQIER 359
Query: 182 DVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDAL 237
+ + E P V LE Q+ +L G E + F P + L E A+
Sbjct: 360 KLRQQLEICQIPSRSQVESKRLEKLQRQIQESLAG---ERMASFLPIVRELSAEYDPQAI 416
Query: 238 AAALAQL 244
AAA Q+
Sbjct: 417 AAAALQM 423
>gi|254505608|ref|ZP_05117754.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16]
gi|219551261|gb|EED28240.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16]
Length = 647
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 142/254 (55%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K + ++L +P ID+ G + ++ K +S L+
Sbjct: 184 VLFSATMPPMLKSIVERFLRDPETIDVAGKN--HTVDKVEQQFWVVKGVEKDEAMSRLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA-- 236
ER E + P + V ES ++ A L +++E F+ ++L E DA
Sbjct: 361 ERVTKSSMEEIQLPHRDKVAESRLAKLGAELETEKEHKALEKFSELVEKLQESLELDAAT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAILLKRQQGKRP 434
>gi|90577457|ref|ZP_01233268.1| putative ATP-dependent RNA helicase [Photobacterium angustum S14]
gi|90440543|gb|EAS65723.1| putative ATP-dependent RNA helicase [Photobacterium angustum S14]
Length = 654
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 122/439 (27%), Positives = 202/439 (46%), Gaps = 51/439 (11%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP VK++ ++L NP ID+ G + + ++ K +S L+
Sbjct: 210 VLFSATMPPIVKEIVDRFLRNPARIDVAG--ENRTVSKVEQQFWVVKGVEKDEAMSRLLE 267
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+IVF +T++D + ++ L+S + ALHGDI Q RERT++ ++G +LV
Sbjct: 268 TEDTDA-SIVFVRTRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILV 326
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG+ G AIL+ ++Q R +R++
Sbjct: 327 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRTGKAILLVRTNQIRMLRTI 386
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDA-- 236
ER + E + P+ + V S ++ L + SVE F ++L E DA
Sbjct: 387 ERVTKSRMEEIQLPLRDLVAASRLNRLGEELAAQKEQTSVEAFVELVEKLQESIDVDAAT 446
Query: 237 LAAALAQLSGFSRP---------------------------------------PSSRSLI 257
LAA L Q +RP RS
Sbjct: 447 LAAMLLQRQQGNRPLFYKGPDPMIAAIERESQRRERRGNDRDRGDRRERGGERGERRSYN 506
Query: 258 NHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDL 317
N + LQ+ R+ + + ++G +++ + + IG I + +
Sbjct: 507 NADWDTYQLQVGREQG-----VQVKDIVGAIANELGLSKEFIGAIKLAPTHTFVQLPKKM 561
Query: 318 PEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGA 377
E+A +L +I + + + + L++ P S N R +R G +RGG
Sbjct: 562 TAEVAAQLKKLRIRQNDVKAVVVEGEVLREHRPRSGNRDGNRGGYRGNRDGNRDGNRGGE 621
Query: 378 RGGARGGGSMDRRGFRSSR 396
R R G+ R G+R +R
Sbjct: 622 RRFDRNRGNDTRGGYRGNR 640
>gi|395237134|ref|ZP_10415233.1| ATP-dependent RNA helicase DeaD [Turicella otitidis ATCC 51513]
gi|423351003|ref|ZP_17328655.1| hypothetical protein HMPREF9719_00950 [Turicella otitidis ATCC
51513]
gi|394487633|emb|CCI83321.1| ATP-dependent RNA helicase DeaD [Turicella otitidis ATCC 51513]
gi|404387055|gb|EJZ82184.1| hypothetical protein HMPREF9719_00950 [Turicella otitidis ATCC
51513]
Length = 704
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 122/201 (60%), Gaps = 4/201 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ ++K+S++YL NP + + EK I I K L ++ V
Sbjct: 278 LFSATMPAGIRKISQQYLTNPAEVTV--KTREKTNTNITQRWIFVPHRDKLQALVRILEV 335
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G IVF +TK + +EV+ AL + ++ A++GDI+Q QRERT+ + G+ +LVA
Sbjct: 336 TDVDG-MIVFVRTKSETEEVADALRAAGFSAAAINGDIAQAQRERTVEQLKSGRLDILVA 394
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + ++++++P + E++VHR GRTGRAG+ G AIL T ++R +R++E
Sbjct: 395 TDVAARGLDVERISHVVNFDIPREAESYVHRIGRTGRAGRSGEAILFVTPKEKRMLRTIE 454
Query: 181 RDVGCKFEFVSPPVVEDVLES 201
R P V++V E+
Sbjct: 455 RATKATLTEDELPTVDEVNEA 475
>gi|398309564|ref|ZP_10513038.1| DEAD/DEAH box helicase [Bacillus mojavensis RO-H-1]
Length = 494
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 142/255 (55%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ P ++ + E I+ + + K L+ L+
Sbjct: 180 LLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVSNIQQFYLEVQERKKFDTLTRLLD 237
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLV
Sbjct: 238 IQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 296
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T + +R++
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREISMLRAI 356
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ LE + V L + ++ F+ A L+E+ DA+
Sbjct: 357 EQTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTTISENNLNFYMTAAAELLEDH--DAVT 414
Query: 239 AALAQLSGFSRPPSS 253
A + ++ P S
Sbjct: 415 VVAAAIKMATKEPDS 429
>gi|381182260|ref|ZP_09891076.1| ATP-dependent RNA helicase DeaD [Listeriaceae bacterium TTU M1-001]
gi|380317854|gb|EIA21157.1| ATP-dependent RNA helicase DeaD [Listeriaceae bacterium TTU M1-001]
Length = 502
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 140/249 (56%), Gaps = 11/249 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP ++++ +++ +P + + E A I+ + I K +LS L+
Sbjct: 179 LLFSATMPDPIRRIGERFMHDPEMVRIKAK--EMTALLIEQFFIKVHEKEKFDVLSRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V + IVF +TKR DE+S AL +E +HGD++Q +R L F++GK VLV
Sbjct: 237 VQSPE-LAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++P DPE++VHR GRTGRAGKEG AI + +R++
Sbjct: 296 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRTV 355
Query: 180 ERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
E+ + + + PP ++ L + E++ V E++ + A L+E+
Sbjct: 356 EQTTKKRMQPLKPPTWDEAFAGQLRIATEKITEI---VTEENLADYKAVASELLEKYDAT 412
Query: 236 ALAAALAQL 244
+AAA+ ++
Sbjct: 413 DIAAAMLKM 421
>gi|325964224|ref|YP_004242130.1| DNA/RNA helicase [Arthrobacter phenanthrenivorans Sphe3]
gi|323470311|gb|ADX73996.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
Sphe3]
Length = 710
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 112/351 (31%), Positives = 183/351 (52%), Gaps = 36/351 (10%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMPS ++++S++YL+NP I V ++ A + Y + K ++ ++ V
Sbjct: 252 LFSATMPSQIRRMSKQYLNNPAEIS-VKSKTTTGANTRQRY-LQVMGPHKLDAMTRILEV 309
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I F +TK ++++ L S + A++GDI Q QRERT++ ++G+ +LVA
Sbjct: 310 EEFDG-VIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDILVA 368
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +I+Y++P+D E++VHR GRTGRAG+ G AIL T ++ +RS+E
Sbjct: 369 TDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRSIE 428
Query: 181 RDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
+ E + P E V L AE++ TL E V F EE A
Sbjct: 429 KATRQPVEQMHLPTAETVNTLRLGKFAERITETLAS---EDVAPFRDLIASYEEEHNVPA 485
Query: 237 --LAAALAQLSGFSRP------PSSRSLINHEQG-------WVTLQLTRDSAFSRGFMSA 281
+AAALA ++ +P P++ E+ T LT +A R +
Sbjct: 486 SEIAAALAVMAQGGQPLLVKELPAAPEFQKRERSKDGFGSRGPTRALTEGNATYRIAVGR 545
Query: 282 R------SVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELL 326
R S++G +++ ++ +IG I I +D ++ +LP +++ E L
Sbjct: 546 RQRVMPGSIVGAIANEGGISSAQIGGIDIRSDH----SLVELPADLSPEQL 592
>gi|407775962|ref|ZP_11123253.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Thalassospira profundimaris WP0211]
gi|407281034|gb|EKF06599.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Thalassospira profundimaris WP0211]
Length = 605
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 119/184 (64%), Gaps = 8/184 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDL--VGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
+ FSATMP+ + +L+ L +P+ + + V E++ + + L T KR +L++L
Sbjct: 184 LFFSATMPTQIGQLAGDMLSDPVKVSVTPVATTQERVEQSVYLI----ERTRKRQLLAEL 239
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
+ A +T+VFT+TKR AD V+ L + I++ A+HG+ SQ+QRER LN F+ G+ V
Sbjct: 240 LDNPAFK-RTLVFTRTKRGADRVARHLEANKISAAAIHGNKSQNQRERALNAFKDGQINV 298
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATD+AARG+D+ +V ++++ELPN PE++VHR GRT R G G+AI +R +R
Sbjct: 299 LVATDIAARGIDVDSVTHVVNFELPNVPESYVHRIGRTARGGASGSAIAFCDEEERGLLR 358
Query: 178 SLER 181
+E+
Sbjct: 359 DIEK 362
>gi|352093689|ref|ZP_08954860.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. WH 8016]
gi|351680029|gb|EHA63161.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. WH 8016]
Length = 602
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 139/256 (54%), Gaps = 26/256 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +++LS++YL P I + EK A I+ I+ + K L+ ++
Sbjct: 226 VLFSATMPNEIRRLSKRYLREPAEITI--KTKEKEARRIRHRCITMQNSHKLEALNRVLE 283
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-------LHGDISQHQRERTLNGFRQG 113
G I+F +TK ++ LT + EA L+GD+ Q+QRERT+ R+G
Sbjct: 284 AVTGEG-VIIFARTK------AITLTVAESLEAAGHDVAVLNGDVPQNQRERTVERLRKG 336
Query: 114 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 173
+LVATDVAARGLD+ + L+I+Y++P D E +VHR GRTGRAG+ G AIL T +R
Sbjct: 337 TVNILVATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFITPRER 396
Query: 174 RTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV-----HPES-----VEFFTP 223
R V +LER VG E + P ++ +S +++ L+ PE E
Sbjct: 397 RFVGNLERAVGQAIEPMDIPSNAEINQSRLDRLRTRLSAEATSEDKPEEETALLQELIQR 456
Query: 224 TAQRLIEEKGTDALAA 239
AQ L E G LAA
Sbjct: 457 VAQELEVEPGQLTLAA 472
>gi|392531372|ref|ZP_10278509.1| ATP-dependent RNA helicase; cold shock [Carnobacterium
maltaromaticum ATCC 35586]
gi|414082690|ref|YP_006991393.1| DEAD/DEAH box helicase [Carnobacterium maltaromaticum LMA28]
gi|412996269|emb|CCO10078.1| DEAD/DEAH box helicase family protein [Carnobacterium
maltaromaticum LMA28]
Length = 541
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 136/246 (55%), Gaps = 7/246 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEG-IKLYAISTTATSKRTILSDLI 59
+LFSATMP +K++ K+++ P ++ + Q +++ I Y + K I++ L+
Sbjct: 178 LLFSATMPDAIKRIGVKFMNEPEHVRI---QATAMSDSLIDQYYVRCKDFEKFDIMTRLL 234
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
V TIVF +TKR DE+S L +E +HGD+SQ +R L F++G +L
Sbjct: 235 DVQTPE-LTIVFGRTKRRVDELSKGLEMRGYRAEGIHGDLSQQKRMSVLKSFKKGDLDIL 293
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLDI V + +Y++P DPE++VHR GRTGRAGKEG ++ T ++ +R
Sbjct: 294 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMSVTFITPNEMGYLRV 353
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDAL 237
+E K + PP + E + + T V +E + A +L+E+ T +
Sbjct: 354 IEDLTKKKMTTLRPPTNAEAFEGQVKAAMETAEELVKSNDLERYEKAAAQLLEDYDTTDI 413
Query: 238 AAALAQ 243
AAA +
Sbjct: 414 AAAFLK 419
>gi|345304632|ref|YP_004826534.1| DEAD/DEAH box helicase domain-containing protein [Rhodothermus
marinus SG0.5JP17-172]
gi|345113865|gb|AEN74697.1| DEAD/DEAH box helicase domain protein [Rhodothermus marinus
SG0.5JP17-172]
Length = 505
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 131/239 (54%), Gaps = 11/239 (4%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
+FSAT+P V+ L+R++L +P + L + D AE I+ K L LI +
Sbjct: 220 MFSATIPPRVQALAREFLKDPAYVSL--STDRIAAETIEHRYFIVPPMEKDRALVQLIEL 277
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
I+F TKRD + + L + ++A+ GD+ Q QRER ++ R+G+ +LVA
Sbjct: 278 -ENPESAIIFANTKRDVEYLGQFLKNYGYNADAITGDLPQKQRERIMDRLRKGQLRLLVA 336
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARG+DI ++ + Y++P DPE +VHRSGRTGR GKEGT I++ T + +R++
Sbjct: 337 TDVAARGIDISDLSHVFMYDVPQDPEYYVHRSGRTGRVGKEGTTIVLVTPLEEARLRAIA 396
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEF-------FTPTAQRLIEEK 232
R E + P E V E AE+ VA L + E+ F P ++L +E+
Sbjct: 397 RQYDIPLEKGTLPTPEVVAERVAERAVALLEDRYRETTSLDRERIARFVPLVEQLAQEE 455
>gi|254294585|ref|YP_003060608.1| DEAD/DEAH box helicase [Hirschia baltica ATCC 49814]
gi|254043116|gb|ACT59911.1| DEAD/DEAH box helicase domain protein [Hirschia baltica ATCC 49814]
Length = 769
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 121/215 (56%), Gaps = 9/215 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+ FSATMPS V L+ ++L NP + + Q+ AE + K +L L+
Sbjct: 184 LFFSATMPSNVSGLANQFLTNPKKVSIA--QESTTAERVTQTMSHVNQAQKGPLL--LVN 239
Query: 61 VYAKG-GKTIVFTQTKRDADEV-SLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ + + +VFT+TK AD+V S + + I A+HG+ SQ QRER LN FR G VL
Sbjct: 240 LQDESIDRALVFTRTKHGADKVVSKLMNAGIRCGAIHGNKSQAQRERALNAFRNGDSKVL 299
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATD+AARG+D+P V + +YE+PN PE +VHR GRT RAG+EG AI + +++ +
Sbjct: 300 VATDIAARGIDVPGVSHVFNYEIPNVPEQYVHRIGRTARAGREGKAISFVSRDEKKYLLD 359
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV 213
++R + K V P + AE++ A V
Sbjct: 360 IQRQIRMKIPIVDLP---EGFIDQAEEITANATPV 391
>gi|184200206|ref|YP_001854413.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila
DC2201]
gi|183580436|dbj|BAG28907.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila
DC2201]
Length = 719
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 145/256 (56%), Gaps = 13/256 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +++++++YL +P I + + + K ++ ++ V
Sbjct: 261 LFSATMPKAIRRIAQQYLRDPQEITVKAKT--TTGTNTRQRYMQVMGPHKLDAMTRVLEV 318
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G IVF +TK +E++ L + + A++GDI Q+ RERT++ R+GK +LVA
Sbjct: 319 EDYDG-VIVFVRTKAATEEIADKLKARGYTAAAINGDIPQNLRERTVDSLREGKIDILVA 377
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + L+++Y++P+D E++VHR GRTGRAG++G AIL T ++ +R++E
Sbjct: 378 TDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRKGEAILFMTPREKYLLRAIE 437
Query: 181 RDVGCKFEFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
+ E + P ++V ++ A+Q+ T+ E + F +R E DA
Sbjct: 438 KATRQPVEQMRVPTTDEVNQTRKDNFAQQIEETIES---EDLGLFRELVERYESEHDVDA 494
Query: 237 --LAAALAQLSGFSRP 250
+AAALA ++ RP
Sbjct: 495 VEIAAALAVIAQNGRP 510
>gi|157377161|ref|YP_001475761.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157319535|gb|ABV38633.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 610
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 138/256 (53%), Gaps = 13/256 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +K+++ KYL P+++ + E I+ + + +K L ++ V
Sbjct: 185 LFSATMPEQIKRVANKYLSEPVHVKIAATT--TTVETIEQRFVQVSQHNKLEALVRVLEV 242
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +T+ E++ L + AS LHGD++Q RER ++ ++G +++A
Sbjct: 243 EKTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGTLDIIIA 301
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P D E +VHR GRTGRAG+ G AIL T + R +R++E
Sbjct: 302 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIE 361
Query: 181 RDVGCKFEFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIE--EKGT 234
R + + P E V E EQV + +S++F +L + E T
Sbjct: 362 RATKSRISPMDVPSPETVTERRLSRLGEQVSEI---IAKDSLDFMKGAVAQLCQQLEVDT 418
Query: 235 DALAAALAQLSGFSRP 250
D LAAAL Q RP
Sbjct: 419 DILAAALLQQVQKDRP 434
>gi|194015931|ref|ZP_03054546.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Bacillus pumilus ATCC 7061]
gi|194012286|gb|EDW21853.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Bacillus pumilus ATCC 7061]
Length = 496
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ NP ++ + E I+ + + K L+ L+
Sbjct: 180 LLFSATMPAPIKRIAERFMTNPEHVKVKAK--EMTVSNIQQFYLDIHERKKFDTLTRLLD 237
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + +IVF +TKR DE++ AL +E +HGD++Q +R L F++G VLV
Sbjct: 238 IQSPE-LSIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGSIDVLV 296
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAG+ G A+ T ++ +R++
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGRTGMAVTFITPREKDMLRAI 356
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ +E + + L + E ++ F+ A L+E+ D++
Sbjct: 357 EQTTKRKMDRMKEPTLDEAIEGQQQVTIDRLRTIISENNLNFYMTAAAELLEDH--DSVT 414
Query: 239 AALAQLSGFSRPPSS 253
A + ++ P +
Sbjct: 415 VVAAAIKMMTKEPDA 429
>gi|119963381|ref|YP_948725.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
gi|119950240|gb|ABM09151.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
Length = 726
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 139/256 (54%), Gaps = 13/256 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++++S++YL+NP I + K + K L+ ++ V
Sbjct: 256 LFSATMPGQIRRMSKQYLNNPAEISV--KSKTTTGANTKQRYLQVMGPHKLDALTRILEV 313
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I F +TK ++++ L + + A++GDI Q QRERT++ ++G+ +LVA
Sbjct: 314 EEFDG-VIAFVRTKMATEDLADKLKARGFQAAAINGDIPQQQRERTVDALKEGRIDILVA 372
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +I+Y++P+D E++VHR GRTGRAG+ G AIL T ++ +RS+E
Sbjct: 373 TDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRSIE 432
Query: 181 RDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
+ E + P E V L AE++ TL E V F EE A
Sbjct: 433 KATRQPVEQMHLPTAETVNTLRLGKFAERITETLES---EDVAAFRDLISSYEEEHNVPA 489
Query: 237 --LAAALAQLSGFSRP 250
+AAALA ++ +P
Sbjct: 490 SEIAAALAVMAQGGQP 505
>gi|260777273|ref|ZP_05886167.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450]
gi|260606939|gb|EEX33213.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450]
Length = 641
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 143/254 (56%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K + ++L +P+ ID+ G + ++ K +S L+
Sbjct: 184 VLFSATMPPMLKNIVERFLRDPITIDVAGKN--HTVDKVEQQFWVVKGVEKDEAMSRLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA-- 236
ER E + P+ + V E+ ++ A L +S+E F ++L + DA
Sbjct: 361 ERVTKSSMEEIQLPLRDKVAEARLVKLGAELEQEKEHKSLEKFGELVEKLQDALEIDAAT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAILLKRQQGKRP 434
>gi|403528202|ref|YP_006663089.1| cold-shock DEAD box protein A [Arthrobacter sp. Rue61a]
gi|403230629|gb|AFR30051.1| cold-shock DEAD box protein A [Arthrobacter sp. Rue61a]
Length = 726
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 139/256 (54%), Gaps = 13/256 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++++S++YL+NP I + K + K L+ ++ V
Sbjct: 256 LFSATMPGQIRRMSKQYLNNPAEISV--KSKTTTGANTKQRYLQVMGPHKLDALTRILEV 313
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I F +TK ++++ L + + A++GDI Q QRERT++ ++G+ +LVA
Sbjct: 314 EEFDG-VIAFVRTKMATEDLADKLKARGFQAAAINGDIPQQQRERTVDALKEGRIDILVA 372
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +I+Y++P+D E++VHR GRTGRAG+ G AIL T ++ +RS+E
Sbjct: 373 TDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRSIE 432
Query: 181 RDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
+ E + P E V L AE++ TL E V F EE A
Sbjct: 433 KATRQPVEQMHLPTAETVNTLRLGKFAERITETLES---EDVAAFRDLISSYEEEHNVPA 489
Query: 237 --LAAALAQLSGFSRP 250
+AAALA ++ +P
Sbjct: 490 SEIAAALAVMAQGGQP 505
>gi|217035426|pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
gi|217035427|pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
gi|217035428|pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
gi|217035429|pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
gi|217035430|pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
gi|217035431|pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 87/190 (45%), Positives = 123/190 (64%), Gaps = 2/190 (1%)
Query: 43 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQH 101
A+ + +LSDL+ V A + +VFT+TK + +E++ L + ++ALHGD+SQ
Sbjct: 10 AVPAPVRGRLEVLSDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQG 68
Query: 102 QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE 161
+RER L FRQG+ VLVATDVAARGLDIP VDL++HY LP+ E + HRSGRTGRAG+
Sbjct: 69 ERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRG 128
Query: 162 GTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFF 221
G +L++ +RR V +LER VG +F+ V+PP E+VLE+ ++A L V + +
Sbjct: 129 GRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLY 188
Query: 222 TPTAQRLIEE 231
A RL E
Sbjct: 189 QDFAGRLFAE 198
>gi|308068476|ref|YP_003870081.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus polymyxa
E681]
gi|305857755|gb|ADM69543.1| Probable RNA helicase exp9 (Exported protein 9) [Paenibacillus
polymyxa E681]
Length = 529
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 142/253 (56%), Gaps = 8/253 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+ +K+L+ ++L NP ++ ++ Q A I I K LS LI
Sbjct: 179 MLFSATMPANIKRLAEQFLKNPEHVSVIPKQVS--APLIDQAYIEVPERQKFEALSRLID 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL +++ LHGD+SQ+QR+ + FR G VLV
Sbjct: 237 MESPE-LAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ V +++++LP DPE++VHR GRTGRAGKEG A T + + +
Sbjct: 296 ATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHFI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVAT--LNGVHPESVEFFTPTAQRLIEE-KGTDA 236
ER + P + + LE ++++A L V + + A +++E+
Sbjct: 356 ERVTRHRIPRKPLPTLAEALEGK-QRIIAERLLEAVESGELNEYKGLAIQMLEQYDSVQL 414
Query: 237 LAAALAQLSGFSR 249
L+AAL ++G R
Sbjct: 415 LSAALKLMTGEKR 427
>gi|317970363|ref|ZP_07971753.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0205]
Length = 598
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 149/281 (53%), Gaps = 21/281 (7%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMPS ++++S +YL++P I + + + I+ I+ K LS ++
Sbjct: 209 VLFSATMPSEIRRISHQYLNSPAEITIKTKGSD--SSRIQQRFITVNGPMKLEALSRVLE 266
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
K G I+F +TK V+ AL + L+GD++Q QRERT+ + G VLV
Sbjct: 267 AETKEG-VIIFARTKAITVTVAEALEAKGYGVAVLNGDVAQSQRERTIERLKNGTVDVLV 325
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ + L+I+Y++P D E +VHR GRTGRAG+ G AIL T +RR + L
Sbjct: 326 ATDVAARGLDVDRISLVINYDIPFDSEAYVHRIGRTGRAGRTGNAILFVTPRERRFITGL 385
Query: 180 ERDVGCKFEFVSPP----VVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIE----- 230
ER VG E + P + + L+ E++ T+ G++ E + L E
Sbjct: 386 ERAVGRPIEPMEIPTNASINQSRLDRLRERLSETVKGLNSEETSNLSEQQALLSEIIKRV 445
Query: 231 ----EKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 267
E + LA A Q++ +P L++ ++ W+ Q
Sbjct: 446 GQESEVAPEQLALAALQMAVGDQP----LLVHDDENWIRQQ 482
>gi|319654684|ref|ZP_08008763.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
gi|317393600|gb|EFV74359.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
Length = 472
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 140/255 (54%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +++++ +++ P + + E I+ Y I +K +L+ L+
Sbjct: 160 LLFSATMPAPIRRMAERFMKEPQIVRVKAK--EMTVSSIEQYYIEVHEKNKFDVLTRLLD 217
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL +E +HGD+SQ +R L F++G VLV
Sbjct: 218 IQSPE-LAIVFGRTKRRVDELAEALNLRGYMAEGIHGDLSQAKRISVLRKFKEGSIDVLV 276
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ ++ + +
Sbjct: 277 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFINPREKSYLHVV 336
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVV-ATLNGVHPESVEFFTPTAQRLIEEKGTDALA 238
ER K E + P +++ LE + V+ + + ++E + A L+ +K DA
Sbjct: 337 ERTTKRKMERMDAPTLDEALEGQQKAVMEKIMQTIEENNLESYKEAADELLAQK--DAST 394
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 395 VVQAVLKMLTKEPDT 409
>gi|299470469|emb|CBN78461.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 1012
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 107/170 (62%), Gaps = 3/170 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
+FSATMP+ V+K+++KYL +P I +G++D I+ + T K+T +++L+
Sbjct: 789 MFSATMPAAVEKMAKKYLRHPA-IVQIGDEDTGKNRRIEQRVLWMTEAQKKTKVTELLRG 847
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ K + +VF TK+ AD + L + LHG +Q QRE L FR G +TVLVA
Sbjct: 848 HDKEDRVLVFINTKKSADMLGRQLEQAGFPTGVLHGGKTQDQREENLESFRDGDYTVLVA 907
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 170
TDVA+RGLDIP+V +I+YELPN ET+ HR GRTGRAGK+G A T
Sbjct: 908 TDVASRGLDIPDVK-VINYELPNKIETYCHRIGRTGRAGKDGVATSFLTE 956
>gi|389574285|ref|ZP_10164350.1| ATP-dependent RNA helicase [Bacillus sp. M 2-6]
gi|388426047|gb|EIL83867.1| ATP-dependent RNA helicase [Bacillus sp. M 2-6]
Length = 516
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ NP ++ + E I+ + + K L+ L+
Sbjct: 197 LLFSATMPAPIKRIAERFMTNPEHVKVKAK--EMTVSNIQQFYLDIHERKKFDTLTRLLD 254
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + +IVF +TKR DE++ AL +E +HGD++Q +R L F++G VLV
Sbjct: 255 IQSPE-LSIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGSIDVLV 313
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAG+ G A+ T ++ +R++
Sbjct: 314 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGRTGMAMTFITPREKDMLRAI 373
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ +E + + L + E ++ F+ A L+E+ D++
Sbjct: 374 EQTTKRKMDRMKEPTLDEAIEGQQQVTIDRLRTIISENNLNFYMTAAAELLEDH--DSVT 431
Query: 239 AALAQLSGFSRPPSS 253
A + ++ P +
Sbjct: 432 VVAAAIKMMTKEPDA 446
>gi|402828050|ref|ZP_10876941.1| putative ATP-dependent RNA helicase RhlE [Slackia sp. CM382]
gi|402286651|gb|EJU35113.1| putative ATP-dependent RNA helicase RhlE [Slackia sp. CM382]
Length = 721
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 120/206 (58%), Gaps = 6/206 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+ K+ L +P I++ D +A+ I Y I T K +L+
Sbjct: 203 LLFSATIDRSQDKVMFSLLKDPEIIEIAHRGD--VADLIDQYVIKTDRRLKPALLNSF-- 258
Query: 61 VYAKGG-KTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
V +GG + IVFT+TK AD + L I IA+EA+H D SQ QR R L+ FR+GK VL
Sbjct: 259 VRERGGFRVIVFTRTKGGADNCTKRLRKIGIATEAIHADRSQAQRARALDNFREGKTHVL 318
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDV +RG+D+P VD +I+Y+LP PE +VHR GRTGRAG G A+ T R ++S
Sbjct: 319 VATDVLSRGIDVPEVDYVINYDLPMMPEDYVHRIGRTGRAGARGYAVSFVTPDTRNLLKS 378
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAE 204
+++ + E + V +D +E E
Sbjct: 379 IQKFIDQTIEVLDFAVSDDAMEPVGE 404
>gi|375092115|ref|ZP_09738400.1| hypothetical protein HMPREF9709_01262 [Helcococcus kunzii ATCC
51366]
gi|374561881|gb|EHR33218.1| hypothetical protein HMPREF9709_01262 [Helcococcus kunzii ATCC
51366]
Length = 540
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 117/206 (56%), Gaps = 4/206 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
FSATM + + + S+ Y + P I + Q E E IK Y + + K+ IL+ L+ +
Sbjct: 179 FFSATMGNDIMEFSKLYQNIPQQI--LIEQKELTVEKIKQYYLEMDSKMKKEILNRLLGM 236
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
Y +IVF TKR D++ LT + +ALHGD+ Q QR+ + FR +L+A
Sbjct: 237 Y-NPNLSIVFCNTKRMVDQLVTDLTKLGYNVDALHGDMKQSQRDNVMKRFRASTIEILIA 295
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TD+AARGLD+ NVDL+++Y+LP + +VHR GRT RAGK+G + TS R + +E
Sbjct: 296 TDIAARGLDVENVDLVVNYDLPQQNDYYVHRIGRTARAGKKGISFTFVTSRDRNKLGEIE 355
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQV 206
R K E + P + DV +S Q+
Sbjct: 356 RYTNSKMEKMELPTIYDVRNNSRNQL 381
>gi|261250797|ref|ZP_05943371.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417953999|ref|ZP_12597040.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260937670|gb|EEX93658.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342816267|gb|EGU51169.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 660
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 142/254 (55%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K + ++L +P ID+ G + ++ K +S L+
Sbjct: 184 VLFSATMPPMLKSIVERFLRDPETIDVAGKN--HTVDKVEQQFWVVKGVEKDEAMSRLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA-- 236
ER E + P + V E+ ++ A L +++E F+ ++L E DA
Sbjct: 361 ERVTKSSMEEIQLPHRDKVAEARLAKLGAELETEKEHKALEKFSELVEKLQESLELDAAT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAILLKRQQGKRP 434
>gi|149183244|ref|ZP_01861688.1| ATP-dependent RNA helicase [Bacillus sp. SG-1]
gi|148849040|gb|EDL63246.1| ATP-dependent RNA helicase [Bacillus sp. SG-1]
Length = 470
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 140/249 (56%), Gaps = 11/249 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP ++K++ ++ +P + + E I+ Y + K +LS L+
Sbjct: 160 LLFSATMPGPIRKIANNFMTDPETVSV--KSKEMTVPHIEQYFVKAHEKEKFDVLSRLLD 217
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V + I+F +TKR DE++ ALT ++E +HGD+SQ +R L F++G+ VLV
Sbjct: 218 VQSPE-LAIIFGRTKRRVDELARALTLRGYSAEGIHGDLSQAKRMTVLRQFKEGRIDVLV 276
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGKEG A+ T + +R +
Sbjct: 277 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKEGMAMTFVTPREMGYLRIV 336
Query: 180 ERDVGCKFEFVSPPVVEDVLES----SAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
E+ + PP + LE + E++V T V ++ + A+ L+E+ +
Sbjct: 337 EKTTKKSMTQMKPPTSNEALEGQQRLAMEKLVET---VKSNELQNYRGMAKELLEDHDSV 393
Query: 236 ALAAALAQL 244
+ AA +L
Sbjct: 394 EIVAAALRL 402
>gi|88808892|ref|ZP_01124401.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
gi|88786834|gb|EAR17992.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
Length = 607
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 97/277 (35%), Positives = 152/277 (54%), Gaps = 26/277 (9%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +++LS++YL P I + E A+ I+ +I+ + K L+ ++
Sbjct: 235 VLFSATMPNEIRRLSKRYLQEPAEITIKTKDRE--AKRIRQRSITMQNSHKIEALNRVLE 292
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-------LHGDISQHQRERTLNGFRQG 113
G I+F +TK ++ LT + EA L+GD+ Q+QRERT++ R+G
Sbjct: 293 AVTGEG-VIIFARTK------AITLTVAESLEAAGHDVAVLNGDVPQNQRERTVDRLRKG 345
Query: 114 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 173
+LVATDVAARGLD+ + L+I+Y++P D E +VHR GRTGRAG+ G AIL T +R
Sbjct: 346 TVNILVATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAILFVTPRER 405
Query: 174 RTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIE--- 230
R V +LER V E + P ++ +S +++ L+ + TP Q LI+
Sbjct: 406 RFVGNLERAVNQSIEPMDIPSNAEINQSRLDRLRNRLSEAAVCEADDETPLLQELIQRVA 465
Query: 231 ---EKGTDALAAALAQLSGFSRPPSSRSLINHEQGWV 264
E D LA A +L +P L++ ++ W+
Sbjct: 466 QEHELSADQLALAALRLVVGDQP----LLVSGDESWL 498
>gi|172056656|ref|YP_001813116.1| DEAD/DEAH box helicase [Exiguobacterium sibiricum 255-15]
gi|171989177|gb|ACB60099.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
255-15]
Length = 530
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 144/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP ++K++ +++ P +I + E E I I + K +L LI
Sbjct: 179 LLFSATMPPQIRKIADRFMTTPTHIKV--KAKEMTVENIDQSFIELKESQKFDVLCRLID 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +I+F +TK+ DE++ L ++ LHGD++Q +R++ + F++G +LV
Sbjct: 237 TDSPE-LSIIFGRTKKRVDEMTEGLIQRGYTADGLHGDLTQAKRDQVIRRFKKGTIDILV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G+AI T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGSAITFVTPREFGQIKTI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
ER K P ++++LE + + L V ++ + +T AQ L+EE +A+
Sbjct: 356 ERVTNKKMSRRHAPTLDEILEGNLKLAAQELIKRVEAKNSQEYTTLAQELLEE--YEAVE 413
Query: 239 AALAQLSGFSRPPSS 253
A L G ++ P +
Sbjct: 414 LIAAALKGLTKEPDA 428
>gi|374323237|ref|YP_005076366.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus terrae
HPL-003]
gi|357202246|gb|AET60143.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus terrae
HPL-003]
Length = 529
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 141/253 (55%), Gaps = 8/253 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP +K+L+ ++L NP ++ ++ Q A I I K LS LI
Sbjct: 179 MLFSATMPPNIKRLAEQFLKNPEHVSVIPKQVS--APLIDQAYIEVPERQKFEALSRLID 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL +++ LHGD+SQ+QR+ + FR G VLV
Sbjct: 237 MESPE-LAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ V +++++LP DPE++VHR GRTGRAGKEG A T + + +
Sbjct: 296 ATDVAARGLDVSGVSHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHFI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVAT--LNGVHPESVEFFTPTAQRLIEE-KGTDA 236
ER + P + + LE ++++A L V + + A +++E+
Sbjct: 356 ERVTRHRIARKPLPTLAEALEGK-QRIIAERLLEAVESGELNEYKGLAIQMLEQYDSVQL 414
Query: 237 LAAALAQLSGFSR 249
L+AAL ++G R
Sbjct: 415 LSAALKLMTGEKR 427
>gi|386750015|ref|YP_006223222.1| ATP-dependent RNA helicase [Helicobacter cetorum MIT 00-7128]
gi|384556258|gb|AFI04592.1| ATP-dependent RNA helicase [Helicobacter cetorum MIT 00-7128]
Length = 513
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 127/213 (59%), Gaps = 10/213 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +KKL+ K L+NP+ I + + + Y I+ S+ I+ L T
Sbjct: 214 LLFSATMPEPIKKLADKILENPIKIHIAPSNITNTDISQRFYVINEHERSE-AIMRLLDT 272
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
K+I+FT+TK++A+E++ L + ALHGD+ Q +R ++ F++ + VLV
Sbjct: 273 --QSLAKSIIFTRTKKEANELNQILNAKNYKCTALHGDMEQRERRASIMAFKKNEVDVLV 330
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVA+RGLDI +V + +Y LP + E+++HR GRTGRAGK+G AI + T + + + +
Sbjct: 331 ATDVASRGLDISDVSHVFNYHLPLNTESYIHRIGRTGRAGKKGVAITLVTPLEYKELLRM 390
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG 212
++D+G K E P +++ Q+V TL
Sbjct: 391 QKDIGSKIELFEIPSMDE------NQIVKTLQN 417
>gi|339009468|ref|ZP_08642040.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus LMG 15441]
gi|421872706|ref|ZP_16304323.1| DEAD-box ATP-dependent RNA helicase CshA domain protein
[Brevibacillus laterosporus GI-9]
gi|338773946|gb|EGP33477.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus LMG 15441]
gi|372458121|emb|CCF13872.1| DEAD-box ATP-dependent RNA helicase CshA domain protein
[Brevibacillus laterosporus GI-9]
Length = 529
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 137/235 (58%), Gaps = 8/235 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI- 59
+LFSATMP +K+L+ +Y+ NP + + +++E A I+ +KR L ++
Sbjct: 179 LLFSATMPPEIKRLAHRYMKNPETVAV--SREEVTAPSIEQVYYKVFERNKRESLCRILD 236
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ + G I+F +TKR DE+S AL + ++ LHGD+SQ QR++ + FR+G L
Sbjct: 237 SQDVELG--IIFCRTKRGVDELSEALQARGYMADGLHGDLSQAQRDKVMKAFREGTIEFL 294
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
+ATDVAARG+D+ NV +I+Y++P DPE++VHR GRTGRAG++G A+ + T + R +
Sbjct: 295 IATDVAARGIDVGNVSHVINYDIPQDPESYVHRIGRTGRAGRKGIAMTLVTPREMRQLMV 354
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVE-FFTPTAQRLIEE 231
+++ + P +E++ E Q+ L + ESV + L++E
Sbjct: 355 IQKQTKASLITRTVPTLEEIAERKRTQLREQLRSLIESESVNGMYQEIVNELMQE 409
>gi|269217166|ref|ZP_06161020.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC
700122]
gi|269129303|gb|EEZ60388.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC
700122]
Length = 721
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 120/206 (58%), Gaps = 6/206 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+ K+ L +P I++ D +A+ I Y I T K +L+
Sbjct: 203 LLFSATIDRSQDKVMFSLLKDPEIIEIAHRGD--VADLIDQYVIKTDRRLKPALLNSF-- 258
Query: 61 VYAKGG-KTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
V +GG + IVFT+TK AD + L I IA+EA+H D SQ QR R L+ FR+GK VL
Sbjct: 259 VRERGGFRVIVFTRTKGGADNCTKRLRKIGIATEAIHADRSQAQRARALDNFREGKTHVL 318
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDV +RG+D+P VD +I+Y+LP PE +VHR GRTGRAG G A+ T R ++S
Sbjct: 319 VATDVLSRGIDVPEVDYVINYDLPMMPEDYVHRIGRTGRAGARGYAVSFVTPDTRNLLKS 378
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAE 204
+++ + E + V +D +E E
Sbjct: 379 IQKFIDQTIEVLDFAVSDDAMEPVGE 404
>gi|375132206|ref|YP_005048614.1| ATP-dependent RNA helicase DeaD [Vibrio furnissii NCTC 11218]
gi|315181381|gb|ADT88294.1| ATP-dependent RNA helicase DeaD [Vibrio furnissii NCTC 11218]
Length = 632
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 144/254 (56%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP VK + ++L +P +D+ G+ ++ +A+ + Y + K ++ L+
Sbjct: 184 VLFSATMPPMVKDIVDRFLRDPARVDVAGS-NQTVAKVEQQYWV-VKGVEKDEAMARLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDA-- 236
ER E + P + V E+ Q+ L S+E F ++L DA
Sbjct: 361 ERVTRSSMEEIQLPHRDKVAEARLSQLAIELEAEKEHASLEKFAELVEKLQASLEIDANT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAILLKRQQGKRP 434
>gi|443325427|ref|ZP_21054123.1| DNA/RNA helicase, superfamily II [Xenococcus sp. PCC 7305]
gi|442794981|gb|ELS04372.1| DNA/RNA helicase, superfamily II [Xenococcus sp. PCC 7305]
Length = 494
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 137/244 (56%), Gaps = 4/244 (1%)
Query: 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY 62
FSAT+P +K+L ++L +P+ + V QD + + K L ++ +
Sbjct: 182 FSATLPREIKELISQFLTSPVVVK-VKQQDAAPTRIDQKVYMVPRGWQKHQALQPILEI- 239
Query: 63 AKGGKTIVFTQTKRDADEVSLALTSIIAS-EALHGDISQHQRERTLNGFRQGKFTVLVAT 121
+ I+F +TKR A E+++ L S + HG++SQ QRER + FR GK ++VAT
Sbjct: 240 EEPDTAIIFVRTKRTASELTIKLQEAGHSVDEYHGNLSQIQRERLVKRFRDGKVKMIVAT 299
Query: 122 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 181
D+AARGLD+ N+ +I+Y+LP++ ET++HR GRTGRAGK GTAI + RR ++ +ER
Sbjct: 300 DIAARGLDVENLTHVINYDLPDNAETYIHRIGRTGRAGKTGTAIALIQPMDRRMLKQIER 359
Query: 182 DVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAA 240
+ + E P V +++ AT+ + E + F P + L +E A+AAA
Sbjct: 360 RLRVRLETAKIPNRAQVEAKRIDKLQATVKATLAGERMASFLPLVRELSDEYDPQAIAAA 419
Query: 241 LAQL 244
+ Q+
Sbjct: 420 VLQM 423
>gi|332296357|ref|YP_004438280.1| DEAD/DEAH box helicase [Thermodesulfobium narugense DSM 14796]
gi|332179460|gb|AEE15149.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
DSM 14796]
Length = 531
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 124/209 (59%), Gaps = 10/209 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI--KLYAISTTATSKRTILSDL 58
+LFSATMP + L++KY+ NP +V E+L + + Y A K L +
Sbjct: 182 LLFSATMPDPIMALTKKYMKNP---KVVSISKEQLTVPLTDQFYC---EAKDKLEALCRI 235
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
+ KTI+F +TK+ DE+ +L T ++E LHGD++Q QR++ + FR+ V
Sbjct: 236 LET-EDMDKTIIFCRTKKGVDELVASLNTRGYSAEGLHGDLTQAQRDKVMKSFRERNLEV 294
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARGLDI +V +I++++P DPE++VHR GRTGRAGK G AI T + R +R
Sbjct: 295 LVATDVAARGLDISDVSHVINFDIPQDPESYVHRIGRTGRAGKSGIAITFITPREFRQLR 354
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQV 206
+E+ + + P + D+LE +++
Sbjct: 355 LIEKVIRTTIKRKEVPSISDLLEKQKDEL 383
>gi|378549072|ref|ZP_09824288.1| hypothetical protein CCH26_03255 [Citricoccus sp. CH26A]
Length = 631
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 142/253 (56%), Gaps = 7/253 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++++S KYL++P+ + + A I+ + T K ++ ++
Sbjct: 217 LFSATMPRAIQRISGKYLNDPVEVTVAAKN--TTAGNIRQRFLQVTHQWKLEAMTRILET 274
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I F +T+ +E++ L + + A+ GD++Q+QRE+T+ R G+ +LVA
Sbjct: 275 EEHDG-VIAFVRTRNATEELTTKLNARGFRAAAISGDVAQNQREKTVENLRAGRIDILVA 333
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +I+Y++P+D E++VHR GRTGRAG+ G A+L T ++ +RS+E
Sbjct: 334 TDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGDAVLFMTPREKYLLRSIE 393
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEK--GTDAL 237
+ E + P V DV S ++ + + E +E F +EE + +
Sbjct: 394 KATRQTVEQMPMPSVADVNSSRLDKFSSQITQTLAEGELEVFRDLVDSYVEENDVAPEDV 453
Query: 238 AAALAQLSGFSRP 250
AAALA+++ RP
Sbjct: 454 AAALAKMAQGGRP 466
>gi|315648503|ref|ZP_07901602.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
gi|315276197|gb|EFU39543.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
Length = 536
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 138/251 (54%), Gaps = 10/251 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ ++KL+ ++L +P ++ ++ A I I K LS L+
Sbjct: 179 LLFSATMPANIQKLASQFLKDPEHVSVIPKHVS--APLIDQAYIEVPERQKFEALSRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL +++ LHGD+SQHQR+ + FR G VLV
Sbjct: 237 MESPE-LAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ V +++++LP DPE++VHR GRTGRAGKEGTA T + + +
Sbjct: 296 ATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLYFI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
ER + P + + +E AE+V+ + E E+ Q L +
Sbjct: 356 ERVTRHRIPRKPLPTIAEAIEGKQRIIAERVLEIIE--QGELTEYKGLAIQLLEQYDSVQ 413
Query: 236 ALAAALAQLSG 246
LAAA+ L+G
Sbjct: 414 LLAAAMKILTG 424
>gi|157691224|ref|YP_001485686.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
gi|157679982|gb|ABV61126.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
Length = 513
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ NP ++ + E I+ + + K L+ L+
Sbjct: 197 LLFSATMPAPIKRIAERFMTNPEHVKVKAK--EMTVSNIQQFYLDIHERKKFDTLTRLLD 254
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + +IVF +TKR DE++ AL +E +HGD++Q +R L F++G VLV
Sbjct: 255 IQSPE-LSIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGSIDVLV 313
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAG+ G A+ T ++ +R++
Sbjct: 314 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGRTGMAMTFITPREKDMLRAI 373
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ +E + V L + E ++ F+ A L+E+ D++
Sbjct: 374 EQTTKRKMDRMKEPTLDEAIEGQQQVTVDRLRTIISENNLNFYMTAAAELLEDH--DSVT 431
Query: 239 AALAQLSGFSRPPSS 253
A + ++ P +
Sbjct: 432 VVAAAIKMMTKEPDA 446
>gi|422294697|gb|EKU21997.1| ATP-dependent RNA helicase DDX23/PRP28 [Nannochloropsis gaditana
CCMP526]
Length = 820
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 103/171 (60%), Gaps = 2/171 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
+FSATMP V++++R YL P I +G + + I+ I TT KR + DL+T
Sbjct: 596 MFSATMPPAVERIARSYLRAPATIK-IGEANSGKNKRIEQRLIFTTEPGKRKAVVDLLTS 654
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
K K IVF KR D ++ L I+ LHG SQ QRE +L FR G FTVLVA
Sbjct: 655 PKKEDKFIVFVNAKRACDVLARHLEQTRISCGILHGGKSQDQREASLEAFRNGVFTVLVA 714
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS 171
TDVAARGLDIP+V +I+Y++P E + HR GRTGRAGKEG A + T +
Sbjct: 715 TDVAARGLDIPDVSHVINYDMPAKIENYCHRIGRTGRAGKEGLATTLLTEN 765
>gi|209545470|ref|YP_002277699.1| DEAD/DEAH box helicase [Gluconacetobacter diazotrophicus PAl 5]
gi|209533147|gb|ACI53084.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 390
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 118/193 (61%), Gaps = 4/193 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATM + L R+ L PL I + I+ I T A K L ++
Sbjct: 200 LLFSATMSPAISALGRQLLHKPLQI--APPEQAAPPPRIRQQVIFTPAARKAASLLAVLR 257
Query: 61 VYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
A GG+T+VFT+TK+ AD ++ L T + + ALHGD Q +R+RTL+ FR+G+ VLV
Sbjct: 258 REA-GGRTMVFTRTKQAADALARTLNTGGVTAAALHGDHGQVRRDRTLDDFRRGRLLVLV 316
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARG+D+ +V L++++++P PET++HR GRT RAG+ GTA+ + ++R +R +
Sbjct: 317 ATDVMARGIDVEDVALVVNFDIPEQPETYIHRIGRTARAGRRGTALSLCDPAERLKLRDI 376
Query: 180 ERDVGCKFEFVSP 192
ER G + + P
Sbjct: 377 ERQSGARITVIDP 389
>gi|152992584|ref|YP_001358305.1| DEAD/DEAH box helicase [Sulfurovum sp. NBC37-1]
gi|151424445|dbj|BAF71948.1| ATP-dependent RNA helicase, DEAD-box family [Sulfurovum sp.
NBC37-1]
Length = 492
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 121/211 (57%), Gaps = 4/211 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMP+ ++KL+ + L+NP + + + E I Y + L LI
Sbjct: 175 LMFSATMPNGIRKLAEQILNNPKTVSI--TKSESTNSKITQYYYVVQERERDDALVRLID 232
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y K I+F + K++ D + LT+ LHGD+ Q QRE T+ F+QG + V
Sbjct: 233 -YKNPEKCIIFCRMKKEVDRLVAHLTAQGFKVSGLHGDMEQKQREVTIRAFKQGGIDIFV 291
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ +V + +Y +P D E++VHR GRTGRAGK G AI + + ++ RT++ +
Sbjct: 292 ATDVAARGLDVNDVTHVFNYHIPFDSESYVHRIGRTGRAGKTGEAITLVSPNELRTIKRI 351
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL 210
E+DVG K P +V + ++++A +
Sbjct: 352 EKDVGTKMTTQVIPTRIEVQNNRNDELIAKI 382
>gi|420143621|ref|ZP_14651118.1| ATP-dependent RNA helicase [Lactococcus garvieae IPLA 31405]
gi|391856492|gb|EIT67032.1| ATP-dependent RNA helicase [Lactococcus garvieae IPLA 31405]
Length = 539
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 137/249 (55%), Gaps = 9/249 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +KK+ K++ NP +I + E A+ I Y I T K +L+ L+
Sbjct: 178 LLFSATMPNDIKKIGVKFMKNPEHIKVAAK--EMTADRIDQYFIKTKEFEKFDVLTRLLD 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V + IVF +TKR DE++ L +E +HGD+ Q++R R L F+ G +LV
Sbjct: 236 V-ERPELAIVFGRTKRRVDEITRGLKLRGYRAEGIHGDLDQNKRLRVLRDFKGGHLDILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++ D E++VHR GRTGRAGK G ++ + ++ +R++
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAI 354
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-----NGVHPESVEFFTPTAQRLIEEKGT 234
E+ + + + PP ED ++S + + +G + F A+RL+ E
Sbjct: 355 EKLTKKEMKGMRPPTKEDAYQASLSVAMDEIKRDLQDGSLKGKLTKFDADAERLLAEYDV 414
Query: 235 DALAAALAQ 243
L A L Q
Sbjct: 415 KELVAMLIQ 423
>gi|408410488|ref|ZP_11181699.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus sp. 66c]
gi|408410709|ref|ZP_11181911.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus sp. 66c]
gi|409351244|ref|ZP_11234042.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
equicursoris CIP 110162]
gi|407875110|emb|CCK83717.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus sp. 66c]
gi|407875331|emb|CCK83505.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus sp. 66c]
gi|407876877|emb|CCK86100.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
equicursoris CIP 110162]
Length = 483
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 135/244 (55%), Gaps = 4/244 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP ++ L K++++P + + E A+ I Y + K I+ LI
Sbjct: 178 LLFSATMPKPIQNLGEKFMNDPEIVKIKAK--ELTADLIDQYFVRVRENEKFDIMCRLID 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTVLV 119
V +VF +TKR DE++ L + + A +HGD++Q +R + L F++GK +LV
Sbjct: 236 V-ENPDLAVVFGRTKRRVDELTRGLQARGYNAAGIHGDLTQAKRMQVLKRFKEGKLDILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++P DP+++VHR GRTGRAGK G ++ T ++ +R++
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKTGMSVTFVTPNEIGYMRTI 354
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
E K + PP +Q V ++ + + + A++L+E + LAA
Sbjct: 355 EALTKKKMSPLRPPTDAQAFAGQMKQAVEKVDNLLKGDLSKYDDAAEKLLENYSAEDLAA 414
Query: 240 ALAQ 243
AL +
Sbjct: 415 ALLK 418
>gi|428186513|gb|EKX55363.1| hypothetical protein GUITHDRAFT_83766 [Guillardia theta CCMP2712]
Length = 650
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 164/300 (54%), Gaps = 32/300 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNID---------LVGNQDEKLAEGIKLYAISTTATSK 51
++F AT+P + ++++ P+ ID V ++E+ GI AI A S+
Sbjct: 322 LMFGATLPPKLLRVAQDVCRRPVMIDSSGLHRSLAKVAKEEEEETSGISHVAIRAAAGSR 381
Query: 52 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIAS---EALHGDISQHQRERTLN 108
+++DL+ + + + IVF TK +A E++ LT S + LHGD+ Q QR R +
Sbjct: 382 AEVITDLL-LTSGPRRAIVFANTKLEAVELANELTKSSTSTNVDVLHGDLPQFQRNRVMR 440
Query: 109 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP-----------------NDPETFVHR 151
R+G +VLVATDVA+RG+D+ ++DL++ +P + E FVHR
Sbjct: 441 MLREGDVSVLVATDVASRGIDVADLDLVVQCGVPLSASGAMRRKTKTLAEVVNTEVFVHR 500
Query: 152 SGRTGRAGKEGTAILMF--TSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 209
SGRTGR G+ GT++L++ T+ + + V++LER KF++ P E+ + + + +
Sbjct: 501 SGRTGRMGRSGTSVLLWDPTAGEEKLVQALERSAKVKFDYRDAPGPEEKMSAMSRRTRRR 560
Query: 210 LNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 269
+ V V F A+ L E G ALA ALA ++G + PPS RSL+++ + ++T++ T
Sbjct: 561 MEEVDEAVVRLFMKEAESLYESSGLSALARALALVNGVTSPPSPRSLLDNRRDFLTVKAT 620
>gi|373456662|ref|ZP_09548429.1| DEAD/DEAH box helicase domain protein [Caldithrix abyssi DSM 13497]
gi|371718326|gb|EHO40097.1| DEAD/DEAH box helicase domain protein [Caldithrix abyssi DSM 13497]
Length = 527
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 140/249 (56%), Gaps = 9/249 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+P +K L+RKY+D +++ + E+L + S++ I
Sbjct: 183 LLFSATIPPRIKDLARKYMDG---YEMITAKKEQLMPSLTEQIFYEVRVSEKFRALCRII 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLA---LTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
+ ++F +T++DA SLA L ++EA+HG+ISQ QRER+LN F+ K +
Sbjct: 240 DFEDHFYGLIFCKTRKDA--ASLAEDLLERGYSAEAIHGEISQGQRERSLNRFKSRKVNI 297
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARG+D+ ++ +I+Y LP DPE++VHR GRTGRAGK+G A+ T + R +
Sbjct: 298 LVATDVAARGIDVNDISHVINYALPQDPESYVHRIGRTGRAGKQGVAVTFVTPGETRKFQ 357
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVE-FFTPTAQRLIEEKGTDA 236
+++ G K P +D++ + ++ L + ++ + AQ L+++
Sbjct: 358 FIQQIAGRKIMKARLPRAQDIINAKRNKISEQLKNISEGKIDKHYLEWAQELLKDNDPAE 417
Query: 237 LAAALAQLS 245
+ AA+ Q S
Sbjct: 418 VLAAVLQFS 426
>gi|403385798|ref|ZP_10927855.1| ATP-dependent RNA helicase exp9 [Kurthia sp. JC30]
Length = 511
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 142/252 (56%), Gaps = 14/252 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP ++K++ ++ P ++ + E + I+ + + + K ILS L+
Sbjct: 179 LLFSATMPPAIRKIADTFMTEPQSVKI--KAKELTVDNIEQFFVKSQEREKFDILSRLLN 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI--IASEALHGDISQHQRERTLNGFRQGKFTVL 118
V K IVF +TKR DE+S AL SI +E +HGD+SQ +R L F++ K VL
Sbjct: 237 V-QKPELAIVFGRTKRRVDELSHAL-SIRGYIAEGIHGDLSQAKRLSVLRQFKENKIDVL 294
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T + +R
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGVAVTFVTPREMSYLRI 354
Query: 179 LERDVGCKFEFVSPPVVEDVL----ESSAEQVVATLNGVHPESVEFFTPTAQRLIEE-KG 233
+E + + PP ++ L E + EQ+ A + H + + A+ L+++
Sbjct: 355 VEETTKKRMTPLKPPTADEALVGQQEVAVEQLKAIVEKNH---LSNYRQMAEELLKDGDA 411
Query: 234 TDALAAALAQLS 245
D +AAA+ L+
Sbjct: 412 VDFVAAAIKSLT 423
>gi|340356606|ref|ZP_08679248.1| ATP-dependent RNA helicase DeaD [Sporosarcina newyorkensis 2681]
gi|339620533|gb|EGQ25102.1| ATP-dependent RNA helicase DeaD [Sporosarcina newyorkensis 2681]
Length = 526
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 142/249 (57%), Gaps = 8/249 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ ++K++ ++ NP + + E E I+ + + K +LS L+
Sbjct: 204 LLFSATMPAPIRKIAETFMKNPEIVKI--KSKEMTVENIEQFFVKAHEREKFDVLSRLLN 261
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI--IASEALHGDISQHQRERTLNGFRQGKFTVL 118
V+ + IVF +TKR DE++ AL SI +E +HGD++Q +R L F+ K VL
Sbjct: 262 VH-QPELAIVFGRTKRRVDELAHAL-SIRGYLAEGIHGDLTQAKRMSVLRQFKDNKIDVL 319
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G AI T + +R
Sbjct: 320 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGMAITFVTPREMGYLRI 379
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GVHPESVEFFTPTAQRLIEE-KGTDA 236
+E + + PP ++ L + V +L+ + ++E + A +L+++ D
Sbjct: 380 VEETTKKRMTPLRPPTSDEALFEQKKIAVESLSETIKQNNLEDYAGLAAQLLDQYDAKDI 439
Query: 237 LAAALAQLS 245
+AAAL L+
Sbjct: 440 VAAALRSLT 448
>gi|428770509|ref|YP_007162299.1| DEAD/DEAH box helicase [Cyanobacterium aponinum PCC 10605]
gi|428684788|gb|AFZ54255.1| DEAD/DEAH box helicase domain protein [Cyanobacterium aponinum PCC
10605]
Length = 491
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 138/249 (55%), Gaps = 10/249 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+ FSATMP ++ L ++++++P+N QD +Y + + +TI L
Sbjct: 181 ICFSATMPKEIQYLVKEFMNDPINATGEKPQDTPSRIDQCVYMVPRGWSKIKTIQPILEI 240
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIAS-EALHGDISQHQRERTLNGFRQGKFTVLV 119
+ G I+F +TKR A E++ L S + HGD+SQ QRER + +R GK ++V
Sbjct: 241 EDPQSG--IIFVRTKRTASELTTKLQEAGQSVDEYHGDLSQSQRERLIQRWRDGKIKLVV 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATD+AARGLD+ ++ + +++LP++ ET++HR GRTGRAGKEG AI + S RR +R +
Sbjct: 299 ATDIAARGLDVSDLTHVFNFDLPDNTETYIHRIGRTGRAGKEGKAIALVEPSDRRFLRQI 358
Query: 180 ERDVGCKFEFVSPP----VVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
ER + + P V +E EQ+ +L G E + F P + L E+
Sbjct: 359 ERRLNQTIRVENVPNRSTVEAKRMEKLTEQIKESLAG---ERLASFLPLVKELHEDYDPT 415
Query: 236 ALAAALAQL 244
A+AAA Q+
Sbjct: 416 AIAAATLQI 424
>gi|343500286|ref|ZP_08738182.1| ATP-dependent RNA helicase DeaD [Vibrio tubiashii ATCC 19109]
gi|418480787|ref|ZP_13049842.1| cold-shock DEAD-box protein A [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342820665|gb|EGU55483.1| ATP-dependent RNA helicase DeaD [Vibrio tubiashii ATCC 19109]
gi|384571547|gb|EIF02078.1| cold-shock DEAD-box protein A [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 648
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 142/254 (55%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K + ++L +P +D+ G + ++ K +S L+
Sbjct: 184 VLFSATMPPMLKSIVERFLRDPETVDVAGKN--HTVDKVEQQFWVVKGVEKDEAMSRLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA-- 236
ER E + P + V E+ ++ A L +++E F+ ++L E DA
Sbjct: 361 ERVTKSSMEEIQLPHRDKVAEARVAKLGAELEADKEHKALEKFSELVEKLQESLELDAAT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAILLKRQQGKRP 434
>gi|330994757|ref|ZP_08318679.1| Cold-shock DEAD box protein A-like protein [Gluconacetobacter sp.
SXCC-1]
gi|329758018|gb|EGG74540.1| Cold-shock DEAD box protein A-like protein [Gluconacetobacter sp.
SXCC-1]
Length = 376
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 117/193 (60%), Gaps = 3/193 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+P + +L+ + L P + + ++ A I YAI K +
Sbjct: 186 LLFSATLPPAMAELAARLLHRPTRVSMA--VEDAPAPRIAQYAIFVPMRHKTQATLACLR 243
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
Y + +VF +T+++AD V+ A+++++ + A+HGD SQ +RER L FRQG+ VLVA
Sbjct: 244 QYGTQ-RVMVFVRTRQEADGVARAISALVPAIAIHGDHSQARRERMLRDFRQGRVGVLVA 302
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDV ARG+DI +V L+I++++P PE++VHR GRT RAG+ G A+ + +R+ +R +E
Sbjct: 303 TDVMARGIDIDDVALVINHDIPPQPESYVHRIGRTARAGRRGVAVALCAPEERQALREIE 362
Query: 181 RDVGCKFEFVSPP 193
R G + S P
Sbjct: 363 RLTGQRIRIASLP 375
>gi|295397627|ref|ZP_06807702.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
gi|294974090|gb|EFG49842.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
Length = 509
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 136/255 (53%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+P +K+++ ++++P + + Q A+ I Y K +L+ I
Sbjct: 177 LLFSATVPQEIKRIADNFMNDPATVHVKTKQ--MTADLIDQYYSRCKDYEKFDLLTRFID 234
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V +IVF +TKR DEV+ L ++E +HGD+SQ +R L F+ GK +LV
Sbjct: 235 V-QNPELSIVFARTKRRVDEVARGLVERGYSAEGIHGDLSQDKRLGVLRNFKNGKLDILV 293
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGKEG ++ TS++ +R++
Sbjct: 294 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKEGMSVTFVTSNEMSYLRTI 353
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
E + + PP ++ L VV + + E + L E D +A
Sbjct: 354 EDLTKKQMSALRPPTTQEALSGQLSNVVEVVKELIEVEDTGMYQEAITYLSENYTEDEIA 413
Query: 239 AALAQLSGFSRPPSS 253
AL + + PSS
Sbjct: 414 LALVR--SLVKDPSS 426
>gi|258653503|ref|YP_003202659.1| DEAD/DEAH box helicase [Nakamurella multipartita DSM 44233]
gi|258556728|gb|ACV79670.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM
44233]
Length = 607
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 123/207 (59%), Gaps = 4/207 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++ ++ K++ NP++I V Q + ++YA+ K L+ + V
Sbjct: 205 LFSATMPPAIRSIAAKHMTNPVDI-AVSRQSSTVDSVRQIYAV-VPFRDKVDALTRFLQV 262
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+G IVF +TK D+V L + +++ ++GD+ Q +RE+ + R G+ VLVA
Sbjct: 263 -TEGDAAIVFVRTKEACDQVGTDLLARGVSAAVMNGDVPQKEREKIIERLRDGRLDVLVA 321
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ +DL+++++ P +PE +VHR GRTGRAG+ GTA+ FT + +R++E
Sbjct: 322 TDVAARGLDVDRIDLVVNFDAPGEPEAYVHRIGRTGRAGRTGTALTFFTPREMGRLRAIE 381
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVV 207
R E + PP ++V A V+
Sbjct: 382 RATRGTLEQIVPPSPDEVTAHKAAMVL 408
>gi|197294292|ref|YP_001798833.1| DEAD/DEAH box helicase-like [Candidatus Phytoplasma australiense]
gi|171853619|emb|CAM11490.1| DEAD/DEAH box helicase-like [Candidatus Phytoplasma australiense]
Length = 564
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 144/247 (58%), Gaps = 12/247 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA-EGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P +K+++ KY N ++ +KLA I+ Y K +L L+
Sbjct: 181 VLFSATLPPSIKQIASKYQKNT---KILQVPVKKLAVNAIEQYYFLVKEFDKNKLLVRLL 237
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ + TI+F TK+D DE++ L ++A+HGD+ Q+QR+ +N FR+GK +L
Sbjct: 238 DL-KRDYSTILFANTKKDVDEITSFLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKIL 296
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
+ATDVAARG+DI ++ ++++Y+LP++ E +VHR GRTGRAGK+G A + + ++
Sbjct: 297 IATDVAARGIDISDIKMVVNYDLPHEDEVYVHRIGRTGRAGKKGLAYSFISPRKFSQLKK 356
Query: 179 LERDVGCKFEFVSPPVVED----VLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGT 234
LE + K +F+ P VE+ +LE+ ++V+ + E+ P ++L+++ +
Sbjct: 357 LEYYLKEKVKFLEIPSVEEIKKQILENFEQKVIDIIEKNSQENAN--NPMIEKLLQKFSS 414
Query: 235 DALAAAL 241
+ + L
Sbjct: 415 EQIIQGL 421
>gi|338737714|ref|YP_004674676.1| DEAD/DEAH box helicase [Hyphomicrobium sp. MC1]
gi|337758277|emb|CCB64102.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium sp. MC1]
Length = 622
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 115/192 (59%), Gaps = 8/192 (4%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQD--EKLAEGIKLYAISTTATSKRTILSDLI 59
LFSATMP +KK + L +P IDL + +++ + I + + TIL+D
Sbjct: 187 LFSATMPDEIKKFAYDILHDPYRIDLSSKKIVVDRIDQKIMIVKTPEKQSRLHTILND-- 244
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ IVFT+TKR AD V+ L + I+S A HG+ +Q+ R+R LN F G VL
Sbjct: 245 ---EAASRVIVFTRTKRGADRVASRLGMAGISSAAFHGNKAQNARQRALNDFTMGHIRVL 301
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATD+AARG+D+ N+ +I++++P DPET+VHR GRT R G G AI + S+R+ VR+
Sbjct: 302 VATDIAARGIDVSNITHVINFDMPLDPETYVHRVGRTARKGTNGVAISLCDPSERQEVRA 361
Query: 179 LERDVGCKFEFV 190
+ER + + V
Sbjct: 362 IERMMKQPLDVV 373
>gi|452993077|emb|CCQ95421.1| DEAD/DEAH box helicase domain protein [Clostridium ultunense Esp]
Length = 569
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 134/247 (54%), Gaps = 6/247 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+ FSATMP + +++Y NP I +V E ++ Y K ILS LI
Sbjct: 222 IFFSATMPKEIVDFAKRYQTNPKTIKVV--HKELTVPRVEQYYFELKEHMKTEILSRLID 279
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+Y +IVF TK+ DE+++ L + LHGD+ Q QR+R ++ FR G +LV
Sbjct: 280 IY-NPKLSIVFCNTKKKVDELTIELQGRGYFVDGLHGDLKQSQRDRVMSKFRTGNIDILV 338
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ +VD++ +Y++P D E +VHR GRT RAG+EG A+ R ++ +
Sbjct: 339 ATDVAARGLDVDDVDIVFNYDIPQDEEYYVHRIGRTARAGREGIALSFVVGRDRHRIKDI 398
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDA-L 237
ER K P ++D+ E ++ ++ + + + ++ + +++EE T +
Sbjct: 399 ERYTKTKIVRKDLPTLKDMEERQSDILIEKIKDEIDKGQLDRYEKMLNQILEEDYTSFDI 458
Query: 238 AAALAQL 244
AAAL +
Sbjct: 459 AAALLKF 465
>gi|330998021|ref|ZP_08321852.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
gi|329569322|gb|EGG51102.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
Length = 664
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 136/233 (58%), Gaps = 6/233 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATM ++++S+KYL + I +VG+++E AE + A K L ++
Sbjct: 181 LLFSATMSREIERISKKYLRDAKEI-VVGSRNEG-AETVNHVYYMVHAKDKYLALKRIVD 238
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y K I+F +T+ + EV+ L +++LHGD+SQ QR+ T+ FRQ + LV
Sbjct: 239 YYPKI-YAIIFCRTRLETQEVADKLIQDGYNADSLHGDLSQQQRDLTMQKFRQHRVQFLV 297
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ ++ +I+Y +P+D E + HRSGRTGRAGK+GT+I + + +R +R +
Sbjct: 298 ATDVAARGLDVEDLTHVINYGMPDDIENYTHRSGRTGRAGKKGTSICIVHTRERSKIREI 357
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH--PESVEFFTPTAQRLIE 230
E+ +G +F P +++ +V+ + V E +E F P R +E
Sbjct: 358 EKVIGKEFVKGEMPSGKEICAKQLYKVIDDIERVEVDEEEIEQFLPEVYRKLE 410
>gi|388455441|ref|ZP_10137736.1| ATP-dependent RNA helicase [Fluoribacter dumoffii Tex-KL]
Length = 565
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/262 (37%), Positives = 141/262 (53%), Gaps = 25/262 (9%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +++++ YL NP++I++ + + I+ + + K L ++ V
Sbjct: 184 LFSATMPYRIRQIANTYLHNPVSIEI--RAETATVKSIEQRFLFASGHQKPDALLRVLAV 241
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G IVF +TK +EV+ L + + A+HGDI+Q RER + FRQG +LVA
Sbjct: 242 EEYQG-VIVFVRTKSSTEEVAEVLQQQGMRAMAIHGDITQALRERIIAQFRQGAIDILVA 300
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ V +I+Y+LP+D ET+VHR GRTGRAG+ G A+L T + R + S+E
Sbjct: 301 TDVAARGLDVDRVTHVINYDLPHDNETYVHRIGRTGRAGRSGVAVLFVTPKESRLISSIE 360
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQ------VVATLNGVHPESVEFFTPTAQRLIEE--K 232
R + V+ P D + A Q + A L H P+ +R+IEE K
Sbjct: 361 RHTRQRIAKVTVP--NDHMIQVARQQRFMANITARLEHEH-------LPSYKRIIEEYIK 411
Query: 233 GTDA----LAAALAQLSGFSRP 250
D +AA LA L P
Sbjct: 412 ENDVSAVDVAATLALLLNKDLP 433
>gi|348169282|ref|ZP_08876176.1| ATP-dependent RNA helicase [Saccharopolyspora spinosa NRRL 18395]
Length = 576
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 106/341 (31%), Positives = 174/341 (51%), Gaps = 21/341 (6%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++K+S+ YL+ P+ I + A I + A +K L+ ++ V
Sbjct: 181 LFSATMPGAIRKISQNYLNEPVEISV--KTKTSTATNINQRHVPVRAANKLDALTRILEV 238
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
IVF +TK+ +E++ L + ++ A++GDI+Q QRERT+ R GK +LVA
Sbjct: 239 ETFDA-MIVFVRTKQLTEELAEKLQARGFSAAAINGDIAQAQRERTIGHLRDGKIDILVA 297
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P+D E++VHR GRTGRAG+ G AIL + +R +RS+E
Sbjct: 298 TDVAARGLDVERISHVLNYDIPHDTESYVHRVGRTGRAGRSGEAILFVSPRERHLLRSIE 357
Query: 181 RDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
R + + P ++ V L A+ + TL E + +R + T+
Sbjct: 358 RATRQHIQQMELPSIDAVNDRRLAKFAQSITDTLAKGGLEVFQDLVAEYERTHDVPATEI 417
Query: 237 LAAALAQLSG---------FSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGF 287
AA A G PP+ R + + + R R ++ R+++G
Sbjct: 418 AAALAAMAQGDRPLLLDPEPVEPPARRGGPSFDATTSETETYRVEVGRRNRVTPRALVGA 477
Query: 288 LSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNK 328
L++ + IG I D R + + +LP ++ ELL+K
Sbjct: 478 LANEGGVPSKYIGHI----DIRNEHTLIELPADLPDELLSK 514
>gi|163848628|ref|YP_001636672.1| DEAD/DEAH box helicase [Chloroflexus aurantiacus J-10-fl]
gi|222526563|ref|YP_002571034.1| DEAD/DEAH box helicase [Chloroflexus sp. Y-400-fl]
gi|163669917|gb|ABY36283.1| DEAD/DEAH box helicase domain protein [Chloroflexus aurantiacus
J-10-fl]
gi|222450442|gb|ACM54708.1| DEAD/DEAH box helicase domain protein [Chloroflexus sp. Y-400-fl]
Length = 552
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 115/198 (58%), Gaps = 4/198 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSAT+P V+ L+ +Y P+ + + Q I+ A K L ++
Sbjct: 179 LFSATLPPAVQNLTLRYTRQPVRVSIAAEQ--LTTPRIRQTYYEVLARDKLDALCRVLDA 236
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
IVF +T+++AD++ L A+E+LHGD+SQ R+R + FR+G+ VLVA
Sbjct: 237 EMPQ-LAIVFCRTRQEADDIGERLQGRGYAAESLHGDLSQAARDRVMRRFREGQLDVLVA 295
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDI V +I+Y++P DPE++VHR GRTGRAG+EG AI T +RR ++ +E
Sbjct: 296 TDVAARGLDIAEVSHVINYDVPTDPESYVHRIGRTGRAGREGVAITFITPRERRMLQIIE 355
Query: 181 RDVGCKFEFVSPPVVEDV 198
R + E P + DV
Sbjct: 356 RVTRTRIERCQMPTLADV 373
>gi|225022855|ref|ZP_03712047.1| hypothetical protein CORMATOL_02901 [Corynebacterium matruchotii
ATCC 33806]
gi|224944379|gb|EEG25588.1| hypothetical protein CORMATOL_02901 [Corynebacterium matruchotii
ATCC 33806]
Length = 715
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 127/201 (63%), Gaps = 4/201 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMPS +++LS++Y+++P I + + + I ++ +K L+ ++ V
Sbjct: 259 LFSATMPSGIRRLSKQYMNDPHEIQV--KSETRTNTNITQRFLNVAHRNKLDALTRILEV 316
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +E++ L + + A++GDI+Q QRERT+ + G+ +LVA
Sbjct: 317 -TEFEAMIMFVRTKFETEELAEKLRARGFNAAAINGDIAQQQRERTVEQLKDGRLDILVA 375
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P+D E++VHR GRTGRAG+ G AIL T +RR +R++E
Sbjct: 376 TDVAARGLDVERISHVLNYDIPSDTESYVHRIGRTGRAGRSGEAILFVTPRERRFLRNIE 435
Query: 181 RDVGCKFEFVSPPVVEDVLES 201
R + + P V++V ES
Sbjct: 436 RATNAPLQEMELPTVDEVNES 456
>gi|333029481|ref|ZP_08457542.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
18011]
gi|332740078|gb|EGJ70560.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
18011]
Length = 606
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 133/233 (57%), Gaps = 6/233 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATM + ++S+ YL NP I +G ++E ++ +K A K L +
Sbjct: 181 LLFSATMSPEIARISKNYLQNPKEI-TIGRKNEG-SQNVKHVVYKVHAKDKYAALKRIAD 238
Query: 61 VYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y + I+F +T+R+ E++ L + +++LHG++SQ QR+ + FR +LV
Sbjct: 239 FYPQI-YGIIFCRTRRETQEIADLLIKDGYNADSLHGELSQAQRDAVMQKFRMRNIQLLV 297
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ ++ +I+Y LP+D E++ HRSGRTGRAGK GT+I + + +R +
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLRESGKLRDI 357
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLN--GVHPESVEFFTPTAQRLIE 230
E+ +G KFE P E + E +V+ + V+ E +E F P R ++
Sbjct: 358 EKIIGKKFENGELPTGEQICEQQIIKVIDEVEKVKVNEEEIEHFLPEIYRKLD 410
>gi|222151982|ref|YP_002561142.1| hypothetical protein MCCL_1739 [Macrococcus caseolyticus JCSC5402]
gi|222121111|dbj|BAH18446.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 498
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 135/245 (55%), Gaps = 5/245 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP +++L +K++ NP+ + + N D I+ + K ++ +
Sbjct: 179 MLFSATMPKAIQELVQKFMKNPVIVKTMTNNDSD--PSIEEFYTIVKELEKFDTFTNFLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V+ + IVF +TKR DE++ AL S +E LHGDI+Q +R L F+ + +LV
Sbjct: 237 VH-RPELAIVFGRTKRRVDELTSALISKGYRAEGLHGDITQAKRLEVLKKFKNDQIDILV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P D E++ HR GRTGRAGK G AI + +R +
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDVESYTHRIGRTGRAGKHGMAISFVNPVEMDYIRQI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
E+ + + + PP +V+++ + V + + V ++ A+ LIEE G L
Sbjct: 356 EKAKNRQMQALRPPTPGEVMKAREQDVKSKVKAWVEADTEARIESIAKELIEEYGDVKLV 415
Query: 239 AALAQ 243
A+L Q
Sbjct: 416 ASLLQ 420
>gi|430747243|ref|YP_007206372.1| DNA/RNA helicase [Singulisphaera acidiphila DSM 18658]
gi|430018963|gb|AGA30677.1| DNA/RNA helicase, superfamily II [Singulisphaera acidiphila DSM
18658]
Length = 466
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 112/189 (59%), Gaps = 2/189 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+L SATMP V+ L++ YL NP+++ L+ ++ I+ + A K +L L+
Sbjct: 192 LLLSATMPPEVRDLAQTYLVNPVDVRLIREDEDATIPAIRQLYLMVAAERKFELLIKLLR 251
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
A + IVF +TKR AD V + L S + ++ +HG++SQ QR R L GFR G+ T+LV
Sbjct: 252 REA-APRAIVFCRTKRGADRVGMLLRSEGLLADTMHGNLSQAQRNRVLQGFRSGRLTILV 310
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV RG+D+ V +I+++LP DP +VHR GRTGR G +G A + Q + + +
Sbjct: 311 ATDVVGRGIDVRGVSHVINFDLPEDPTHYVHRIGRTGRMGSDGVAFSLVLPDQGKLLDQI 370
Query: 180 ERDVGCKFE 188
ER + + E
Sbjct: 371 ERCISRELE 379
>gi|410639150|ref|ZP_11349703.1| ATP-dependent RNA helicase DeaD [Glaciecola lipolytica E3]
gi|410141678|dbj|GAC16908.1| ATP-dependent RNA helicase DeaD [Glaciecola lipolytica E3]
Length = 575
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 144/253 (56%), Gaps = 7/253 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +KK++ +YL+NP ++ + A I+ K L+ ++ V
Sbjct: 186 LFSATMPAPIKKITERYLNNPKHVKIASKVST--ASTIRQRFCQVAGHHKLEALTRIMEV 243
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +TK E++ L++ E L+GDI+Q+ RERT++ +QGK +LVA
Sbjct: 244 EEFDG-VIIFVRTKTATVELADKLSARGYDVEPLNGDIAQNARERTVDRLKQGKIDILVA 302
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDV ARGLD+ V +I+Y++P D E++VHR GRTGRAG++G AIL + ++R + S+E
Sbjct: 303 TDVVARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAGRQGDAILFISHREKRMLFSIE 362
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQV-VATLNGVHPESVEFFTPTAQRLIEEK--GTDAL 237
+ E + P + ++ ++ + + + + +S+E P + + +E + +
Sbjct: 363 KATKQNIEQMPIPSISEINQTRLSRFKTSVIEAIQDDSIESLIPIVESIQKETEAAPEKI 422
Query: 238 AAALAQLSGFSRP 250
AALA+++ P
Sbjct: 423 MAALAKIAQGDEP 435
>gi|379726995|ref|YP_005319180.1| cold-shock DEAD-box protein A [Melissococcus plutonius DAT561]
gi|376317898|dbj|BAL61685.1| cold-shock DEAD-box protein A [Melissococcus plutonius DAT561]
Length = 502
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 139/254 (54%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K + K++ NP ++ + E A+ I Y + + K I++ L+
Sbjct: 178 LLFSATMPTAIKNIGIKFMKNPDHVKIKAK--EMTADLIDQYYVRSKDYEKFDIMTRLLD 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V TIVF +TKR DE++ L T +E +HGD+SQ +R L F+ G +LV
Sbjct: 236 VQTPE-LTIVFGRTKRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRAFKNGDLDILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++P DPE++VHR GRTGRAGK G ++ T ++ + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVI 354
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQRLIEEKGTDALA 238
E + + PP + + + + E+ +E + +A+ L+E+ ++ L
Sbjct: 355 EDLTKKRMSTLRPPTETEAFKGQLGAAIEDIEKKMEENGLEKYLKSAENLLEKYSSEDLV 414
Query: 239 AALAQLSGFSRPPS 252
A L L S+ PS
Sbjct: 415 ALL--LKVVSKDPS 426
>gi|330448082|ref|ZP_08311730.1| csdA, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328492273|dbj|GAA06227.1| csdA, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 627
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 142/254 (55%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP VK++ ++L NP ID+ G + + ++ K +S L+
Sbjct: 184 VLFSATMPPIVKEIVDRFLRNPERIDVAG--ENRTVSKVEQQFWVVKGVEKDEAMSRLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+IVF +T++D + ++ L S + ALHGDI Q RERT++ ++G +LV
Sbjct: 242 TEDTDA-SIVFVRTRQDTERLADWLCSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG+ G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRTGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQRLIEEKGTDA-- 236
ER + E + P+ + V + ++ L ++ V+ F ++L E DA
Sbjct: 361 ERVTKSRMEEIQLPLRDLVAAARLSRLGEELQAQKEQTNVDAFVELVEKLQESIEVDAAT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L Q +RP
Sbjct: 421 LAAMLLQRQQGNRP 434
>gi|260770312|ref|ZP_05879245.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972]
gi|260615650|gb|EEX40836.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972]
Length = 632
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 144/254 (56%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP VK + ++L +P +D+ G+ ++ +A+ + Y + K ++ L+
Sbjct: 184 VLFSATMPPMVKDIVDRFLRDPARVDVAGS-NQTVAKVEQQYWV-VKGVEKDEAMARLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDA-- 236
ER E + P + V E+ Q+ L S+E F ++L DA
Sbjct: 361 ERVTRSSMEEIQLPHRDKVAEARLSQLAIELEAEKEHASLEKFAELVEKLQVSLEIDANT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAILLKRQQGKRP 434
>gi|87124726|ref|ZP_01080574.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917]
gi|86167605|gb|EAQ68864.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917]
Length = 603
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 124/214 (57%), Gaps = 4/214 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +++LS++YL P I + EK A I+ I+ + K L+ ++
Sbjct: 221 VLFSATMPAEIRRLSKRYLREPAEITI--KTQEKEARRIRQRCITLQNSHKLEALNRVLE 278
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTVLV 119
G I+F +TK VS L + A L+GD+ Q+QRERT+ R+G +LV
Sbjct: 279 AVTGEG-VIIFARTKAITLTVSENLEATGHDVAVLNGDVPQNQRERTVERLRKGTVNILV 337
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ + L+I+Y++P D E +VHR GRTGRAG+ G AIL T +RR V +L
Sbjct: 338 ATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFVTPRERRFVNNL 397
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV 213
ER G E + P ++ ++ + + L V
Sbjct: 398 ERATGQPIEPMQIPSNAEINQARLDNLRQKLTAV 431
>gi|332687106|ref|YP_004456880.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311]
gi|332371115|dbj|BAK22071.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311]
Length = 502
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 139/254 (54%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K + K++ NP ++ + E A+ I Y + + K I++ L+
Sbjct: 178 LLFSATMPTAIKNIGIKFMKNPDHVKIKAK--EMTADLIDQYYVRSKDYEKFDIMTRLLD 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V TIVF +TKR DE++ L T +E +HGD+SQ +R L F+ G +LV
Sbjct: 236 VQTPE-LTIVFGRTKRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRAFKNGDLDILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++P DPE++VHR GRTGRAGK G ++ T ++ + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVI 354
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQRLIEEKGTDALA 238
E + + PP + + + + E+ +E + +A+ L+E+ ++ L
Sbjct: 355 EDLTKKRMSTLRPPTETEAFKGQLGAAIEDIEKKMEENGLEKYLKSAENLLEKYSSEDLV 414
Query: 239 AALAQLSGFSRPPS 252
A L L S+ PS
Sbjct: 415 ALL--LKVVSKDPS 426
>gi|339627938|ref|YP_004719581.1| ATP-dependent RNA helicase [Sulfobacillus acidophilus TPY]
gi|379007571|ref|YP_005257022.1| ATP-dependent RNA helicase DbpA [Sulfobacillus acidophilus DSM
10332]
gi|339285727|gb|AEJ39838.1| ATP-dependent RNA helicase [Sulfobacillus acidophilus TPY]
gi|361053833|gb|AEW05350.1| ATP-dependent RNA helicase DbpA [Sulfobacillus acidophilus DSM
10332]
Length = 525
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 140/248 (56%), Gaps = 14/248 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL-AEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P + KL+R+YL +P+++++ E+L I+ K L+ ++
Sbjct: 183 LLFSATVPDPIAKLARRYLKDPVHVNI---SPERLTVPSIEQVFYEVREFEKLDALTRIL 239
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ + +TI+F +TK+ DE++ L + +EALHGD++Q QR R + F++G +L
Sbjct: 240 DM-EEAERTIIFCRTKKRVDELTEGLQARGYTAEALHGDLNQVQRNRVMKRFKEGGSEIL 298
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLDI NV +I+Y+LP D E++VHR GRTGRAG+ GTAI + + R +R
Sbjct: 299 VATDVAARGLDIDNVTHVINYDLPQDTESYVHRIGRTGRAGRTGTAISLINPKEFRQLRQ 358
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATL-----NGVHPESVEFFTPTAQRLIEEKG 233
+ER + + + P DV E E + L GV P E A+ E
Sbjct: 359 MERVLRVRLQRRPLPTPADVAEKQREMLKNRLAEEIQRGVLPSYQELVMQLAE---EYDS 415
Query: 234 TDALAAAL 241
D AAA+
Sbjct: 416 VDIAAAAI 423
>gi|347520831|ref|YP_004778402.1| ATP-dependent RNA helicase [Lactococcus garvieae ATCC 49156]
gi|343179399|dbj|BAK57738.1| ATP-dependent RNA helicase [Lactococcus garvieae ATCC 49156]
Length = 539
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 137/249 (55%), Gaps = 9/249 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +KK+ K++ NP +I + E A+ I Y I T K +L+ L+
Sbjct: 178 LLFSATMPNDIKKIGVKFMKNPEHIKVAAK--EMTADRIDQYFIKTKEFEKFDVLTRLLD 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V + IVF +TKR DE++ L +E +HGD+ Q++R R L F+ G +LV
Sbjct: 236 V-ERPELAIVFGRTKRRVDEITRGLKLRGYRAEGIHGDLDQNKRLRVLRDFKGGHLDILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++ D E++VHR GRTGRAGK G ++ + ++ +R++
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAI 354
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-----NGVHPESVEFFTPTAQRLIEEKGT 234
E+ + + + PP ED ++S + + +G + F A++L+ E
Sbjct: 355 EKLTKKEMKGMRPPTKEDAYQASLSVAMDEIKRDLQDGSLKGKLTKFDADAEQLLAEYDV 414
Query: 235 DALAAALAQ 243
L A L Q
Sbjct: 415 KELVAMLIQ 423
>gi|418054301|ref|ZP_12692357.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
1NES1]
gi|353211926|gb|EHB77326.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
1NES1]
Length = 590
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 118/194 (60%), Gaps = 10/194 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQD--EKLAEGIKLYAISTTATSKRTILSDLI 59
LFSATMP+ +KK + + L +P +DL +++ + + + + TILSD
Sbjct: 199 LFSATMPAEIKKFAYEVLKDPYRVDLSPKSVVVDRIDQKVMIVRTPEKQSRLHTILSDEA 258
Query: 60 TVYAKGGKTIVFTQTKRDADEVS--LALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
+ IVFT+TKR AD V+ L + SI AS A HG+ +Q+ R+R LN F G V
Sbjct: 259 C-----KRVIVFTRTKRGADRVADRLGMASISAS-AFHGNKAQNARQRALNDFMMGHIRV 312
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATD+AARG+D+ N+ ++++++P DPET+VHR GRT R G G AI + S+R+ +
Sbjct: 313 LVATDIAARGIDVSNITHVVNFDMPLDPETYVHRVGRTARKGNSGIAISLCDPSERQEIA 372
Query: 178 SLERDVGCKFEFVS 191
++ER + K E ++
Sbjct: 373 AIERLMKQKLEVIA 386
>gi|296283706|ref|ZP_06861704.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354]
Length = 461
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 118/208 (56%), Gaps = 12/208 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+ FSATMP +K L +Y NP + + + AE I+ + K+++L +++
Sbjct: 184 LFFSATMPKAIKDLVSQYCRNPAQVSV--TPESTTAERIEQFLFMVQQDEKQSLLELILS 241
Query: 61 ----VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKF 115
+ K + +VF +TK D V L + I + A+HG+ SQ QRER L+ F++ K
Sbjct: 242 GRHEIPGKLERVLVFARTKHGCDRVVKKLAQVGIPANAIHGNKSQPQRERALDEFKRAKT 301
Query: 116 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT 175
VLVATDVAARG+DIP V +I+YELPN PE +VHR GRT RAG +G AI +R+
Sbjct: 302 PVLVATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGADGIAIAFCAEDERQY 361
Query: 176 VRSLERDVGCKFEFVSPP-----VVEDV 198
++ + + +FE + P VVE V
Sbjct: 362 LKDIRKTTDAEFERLPLPDNFRAVVEGV 389
>gi|317129136|ref|YP_004095418.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
gi|315474084|gb|ADU30687.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
DSM 2522]
Length = 528
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 141/258 (54%), Gaps = 19/258 (7%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK-----RTIL 55
MLFSATMP ++KLS KY++NP + + ++ E A I +K R I
Sbjct: 178 MLFSATMPPPIRKLSNKYMNNPKQVTI--SKGEVTAPSINQVYFKVLEKNKLDSLCRVID 235
Query: 56 SDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGK 114
S+ I + I+F +TK+ E++ AL + ++ LHGD++Q QR+ + FR
Sbjct: 236 SETIDL------GIIFCRTKKGVAELTEALQARGYMADGLHGDLTQSQRDIVMKKFRDSS 289
Query: 115 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 174
L+ATDVAARG+D+ NV +I+Y++P DPE++VHR GRTGRAG+EG A+ + T + +
Sbjct: 290 IEFLIATDVAARGIDVENVSHVINYDIPQDPESYVHRIGRTGRAGREGVAVTLVTPREMK 349
Query: 175 TVRSLERDVGCKFEFVSPPVVEDVLESSAE----QVVATLNGVHPESVEFFTPTAQRLIE 230
+RS+E ++ P VE+V+E Q++ + + + L+
Sbjct: 350 HLRSIEAEIKMTIPSQRIPSVEEVVEKQQHVWKGQIIDLIES-EEDDAGLYDDLVSDLLN 408
Query: 231 EKGTDALAAALAQLSGFS 248
+ + + A+L +L+ +S
Sbjct: 409 QYPPNKIVASLLKLAFYS 426
>gi|310644435|ref|YP_003949194.1| DEAD/DEAH box helicase [Paenibacillus polymyxa SC2]
gi|309249386|gb|ADO58953.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
Length = 525
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 118/188 (62%), Gaps = 3/188 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+ ++KL+R Y++ P+++ + +++ I+ + TT K+ L D++
Sbjct: 180 MLFSATMPAGIRKLARVYMNEPVDVKVKSASSVPVSQ-IRQVVVQTTDRGKQQALVDMLN 238
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ ++F +TKR A +++ L + S LHGD+SQ++RE+ + FR+ K +LV
Sbjct: 239 T-DRPYLAVIFCRTKRRASKLNEELQEMGFESGELHGDLSQNKREQVMKAFREAKLQLLV 297
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ V + +Y++P D E+++HR GRTGRAG +G A+ + T +R++
Sbjct: 298 ATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPELRNI 357
Query: 180 ERDVGCKF 187
+R G F
Sbjct: 358 QRVAGVTF 365
>gi|84385216|ref|ZP_00988248.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01]
gi|84379813|gb|EAP96664.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01]
Length = 673
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 142/247 (57%), Gaps = 11/247 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQD--EKLAEGIKLYAISTTATSKRTILSDL 58
+LFSATMP VK + +YL NP +D+ G +K+A+ Y + K +S L
Sbjct: 184 VLFSATMPPMVKTIVDRYLRNPARVDVAGTNHTVDKVAQN---YWV-VKGVEKDEAMSRL 239
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
+ + +IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +
Sbjct: 240 LET-EETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDI 298
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R
Sbjct: 299 LVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLR 358
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA 236
++ER + E + P ++V + ++ A L +++E F L E DA
Sbjct: 359 TIERVTKSQMEEIQLPQRDEVAAARVAKLGAELETEKESKALENFAGLISTLQESLEVDA 418
Query: 237 --LAAAL 241
LAA L
Sbjct: 419 ATLAAML 425
>gi|427408196|ref|ZP_18898398.1| hypothetical protein HMPREF9718_00872 [Sphingobium yanoikuyae ATCC
51230]
gi|425713535|gb|EKU76548.1| hypothetical protein HMPREF9718_00872 [Sphingobium yanoikuyae ATCC
51230]
Length = 578
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 164/337 (48%), Gaps = 18/337 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP + ++++Y + L I VG +E+ I A++ + + +L+
Sbjct: 182 LLFSATMPKPIVAMAKRYQSDALRISTVG--EERGHGDISYQAVTVAPSDIENAVVNLLR 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y + I+F T+ + + +LT A+ AL G+ SQ++R L R + V V
Sbjct: 240 -YHEAETAILFCATRDNVRHLHSSLTERGFAAVALSGEHSQNERNHALQALRDKRARVCV 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+P++ L++H ELP D ET HRSGRTGRAGK+GTA+L+ +RR V S+
Sbjct: 299 ATDVAARGIDLPSLTLVVHVELPRDAETMQHRSGRTGRAGKKGTAVLIVPYPRRRRVESM 358
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
R E+ +PP E +LE ++ +TL E E L+ EK +AA
Sbjct: 359 LRGAKIPVEWGTPPSKEAILEQDNARLRSTLME-KAELDEADWALGAELLAEKSAKEIAA 417
Query: 240 ALAQLSGFSRPPSSRSLINHEQ---------GWVTLQLTRDSAFSRGFMSARSVMGFLSD 290
L + + S P L E G+ Q R R R ++ +
Sbjct: 418 MLVKSARASLPAPEELLDRSEAPPRQEGPRPGFEDTQWFRMDIGRRQNADPRWILPLICR 477
Query: 291 VYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 327
+ +IG I I ++ +F++P IA ++
Sbjct: 478 RGHVSRGDIGAIRITTNE----TMFEIPRAIASRFMS 510
>gi|237807374|ref|YP_002891814.1| DEAD/DEAH box helicase [Tolumonas auensis DSM 9187]
gi|237499635|gb|ACQ92228.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
Length = 642
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 141/256 (55%), Gaps = 12/256 (4%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +++++ ++L P+ I + A I+ + K ++ ++ V
Sbjct: 187 LFSATMPEQIRRIAHRHLKTPVEIKIASKT--STAANIRQRYWLVSGLHKLDAMTRMLEV 244
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSIIAS-EALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ +VF +TK A+E++ L++ S EALHGDI Q RERT+ + G+ +L+A
Sbjct: 245 -EQYDALLVFVRTKTAAEELTSKLSARGHSCEALHGDIPQKLRERTVEKLKAGQIDILIA 303
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P D E++VHR GRTGRAG+ G AIL +RR +R +E
Sbjct: 304 TDVAARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLRMIE 363
Query: 181 RDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
+ E + P +D+ LE Q+ TL+ E ++ F +E++ TD
Sbjct: 364 QATRQPIEPMQMPTAKDINKHRLERFKLQIRETLDS--EEDLQPFQQIINEFLEDESTDP 421
Query: 237 --LAAALAQLSGFSRP 250
L AALA++ P
Sbjct: 422 LDLCAALAKMVQGDEP 437
>gi|254517068|ref|ZP_05129126.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3]
gi|219674573|gb|EED30941.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3]
Length = 609
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 129/220 (58%), Gaps = 22/220 (10%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS----- 56
LFSATMP ++++++++L+ P I IKL ++ + +R +
Sbjct: 187 LFSATMPDAIRRIAKQHLNKPEEIT------------IKLKTVTNASIRQRVWMMGGMHK 234
Query: 57 -DLITVYAKGGKT---IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFR 111
D +T + T I+F +T+ E++ L++ A+ AL+GDI+Q+QRE+T+ +
Sbjct: 235 LDALTRILETEDTDGVIIFVRTRIATQELADKLSARGYATAALNGDIAQNQREKTVENLK 294
Query: 112 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS 171
+G +L+ATDVAARGLD+ + +I+Y++PNDPE +VHR GRTGRAG+ G AIL +
Sbjct: 295 KGGLDILIATDVAARGLDVERISHVINYDIPNDPEAYVHRIGRTGRAGRTGEAILFAANR 354
Query: 172 QRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN 211
+RR +R++ER G K E + P E V + A + A +
Sbjct: 355 ERRLLRTIERVTGQKIESMELPTSEQVSDKRASRFKARIT 394
>gi|424030057|ref|ZP_17769555.1| cold-shock DEAD box protein A [Vibrio cholerae HENC-01]
gi|408883063|gb|EKM21857.1| cold-shock DEAD box protein A [Vibrio cholerae HENC-01]
Length = 643
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 142/254 (55%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K + ++L +P+ ID+ G + ++ K +S L+
Sbjct: 184 VLFSATMPPMLKNIVERFLRDPVTIDVAGKN--HTVDKVQQQFWVVKGVEKDEAMSRLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTD--A 236
ER E + P+ + V E+ ++ A L ++++ F ++L D
Sbjct: 361 ERVTKSSMEEIQLPLRDQVAEARLNKLAAELEAEKEHKALDKFAELVEKLQTSLEIDPTM 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAMLLKRQQGKRP 434
>gi|359778006|ref|ZP_09281280.1| ATP-dependent RNA helicase DeaD [Arthrobacter globiformis NBRC
12137]
gi|359304860|dbj|GAB15109.1| ATP-dependent RNA helicase DeaD [Arthrobacter globiformis NBRC
12137]
Length = 697
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 128/225 (56%), Gaps = 11/225 (4%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMPS ++++S++YL+NP I + IK + K ++ ++ V
Sbjct: 238 LFSATMPSQIRRMSKQYLNNPAEISV--KSKTSTGTNIKQRYLQVMGPHKLDAMTRILEV 295
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I F +TK ++++ L S + A++GDI Q QRERT++ ++G+ +LVA
Sbjct: 296 EEFDG-VIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDILVA 354
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P+D E++VHR GRTGRAG+ G AIL T ++ +R++E
Sbjct: 355 TDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRAGDAILFMTPREKYLLRAIE 414
Query: 181 RDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFF 221
+ E + P E V L AE++ TL E V F
Sbjct: 415 KATRQTVEQMHLPTAETVNSLRLGKFAERITETLES---EDVSMF 456
>gi|326802990|ref|YP_004320808.1| delta 1-pyrroline-5-carboxylate dehydrogenase domain-containing
protein [Aerococcus urinae ACS-120-V-Col10a]
gi|326651469|gb|AEA01652.1| DEAD-box ATP-dependent RNA helicase CshA [Aerococcus urinae
ACS-120-V-Col10a]
Length = 508
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 119/211 (56%), Gaps = 4/211 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP ++++ ++ +P+ + + E A+ I Y K +L+ I
Sbjct: 178 LLFSATMPKEIQRIGEHFMQDPVTVKIEAK--EMTADTIDQYFTKCHDREKFDLLTRFID 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V + IVF +TKR DEVS L +E +HGD+SQ +R + F+ G+ +LV
Sbjct: 236 V-SHAKLAIVFARTKRRVDEVSRGLIERGYQAEGIHGDLSQEKRSSIMKDFKDGRLEILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI NV + +Y++P DPE++VHR GRTGRAGK G +I ++ + +R++
Sbjct: 295 ATDVAARGLDISNVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSITFVSNHEMGYLRTI 354
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL 210
E K + PP E+ +Q +A +
Sbjct: 355 ENLTHKKMSPLRPPTEEEAFTGQIKQSLAAV 385
>gi|294678037|ref|YP_003578652.1| ATP-dependent RNA helicase RhlE [Rhodobacter capsulatus SB 1003]
gi|294476857|gb|ADE86245.1| ATP-dependent RNA helicase RhlE [Rhodobacter capsulatus SB 1003]
Length = 448
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 118/193 (61%), Gaps = 8/193 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLV--GNQDEKLAEGIKLYAISTTATSKRTILSDL 58
+LFSATMP +++L+ YL +P+ +++ G EK+ +G+ TT K +L++
Sbjct: 184 LLFSATMPKLMEELAASYLSDPIRVEVATPGKAAEKIDQGVHF----TTQGEKAALLAEY 239
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
I+ + G +VF +TK +D+++ L + A+HG+ SQ QRER L+ FR + V
Sbjct: 240 ISRH-PGELAVVFNRTKHGSDKLTKLLEKWGFSVTAIHGNKSQGQRERALSAFRASEVQV 298
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARGLDIP V + +Y+LPN PE +VHR GRT RAG++G A+ + +R
Sbjct: 299 LVATDVAARGLDIPQVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAVAFCGPLEMSDLR 358
Query: 178 SLERDVGCKFEFV 190
++E +G K +
Sbjct: 359 AIEAAMGAKIPVI 371
>gi|386712716|ref|YP_006179038.1| DEAD/DEAH box helicase [Halobacillus halophilus DSM 2266]
gi|384072271|emb|CCG43761.1| DEAD-box ATP-dependent RNA helicase CshA [Halobacillus halophilus
DSM 2266]
Length = 490
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 143/250 (57%), Gaps = 10/250 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP ++ ++ ++NP + + E E I+ Y + K L+ L+
Sbjct: 178 LLFSATMPKEIRDIATTLMNNPEEVKV--KSKEMTVENIEQYFVEIPEKHKFDTLTRLLD 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
++ IVF +TKR DEV+ L + ++E +HGD++Q +R TLN F++G+ +LV
Sbjct: 236 IH-DPALAIVFGRTKRRVDEVADGLQARGFSAEGIHGDLTQGKRMSTLNKFKRGRIEILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAG++G +I T ++ + +
Sbjct: 295 ATDVAARGLDISEVSHVYNFDIPQDPESYVHRIGRTGRAGRKGESISFVTPREKDQLNLI 354
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVAT---LNGVHPESVEFFTPTAQRLIEE-KGTD 235
E+ K E + P E+ S +Q VA + + ++ + +A L+E+ +D
Sbjct: 355 EKLTKKKVERLKVPSSEEA--SRGQQKVAVDKLVESLGANDLKNYKHSANELLEQYDSSD 412
Query: 236 ALAAALAQLS 245
+AAAL ++
Sbjct: 413 IIAAALKMMT 422
>gi|392305118|emb|CCI71481.1| putative ATP-dependent RNA helicase DDX17 [Paenibacillus polymyxa
M1]
Length = 535
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 118/188 (62%), Gaps = 3/188 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+ ++KL+R Y++ P+++ + +++ I+ + TT K+ L D++
Sbjct: 190 MLFSATMPAGIRKLARVYMNEPVDVKVKSASSVPVSQ-IRQVVVQTTDRGKQQALVDMLN 248
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ ++F +TKR A +++ L + S LHGD+SQ++RE+ + FR+ K +LV
Sbjct: 249 T-DRPYLAVIFCRTKRRASKLNEELQEMGFESGELHGDLSQNKREQVMKAFREAKLQLLV 307
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ V + +Y++P D E+++HR GRTGRAG +G A+ + T +R++
Sbjct: 308 ATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPELRNI 367
Query: 180 ERDVGCKF 187
+R G F
Sbjct: 368 QRVAGVTF 375
>gi|86145756|ref|ZP_01064085.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222]
gi|85836455|gb|EAQ54584.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222]
Length = 665
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 142/247 (57%), Gaps = 11/247 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQD--EKLAEGIKLYAISTTATSKRTILSDL 58
+LFSATMP VK + +YL NP +D+ G +K+A+ Y + K +S L
Sbjct: 184 VLFSATMPPMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQN---YWV-VKGVEKDEAMSRL 239
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
+ + +IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +
Sbjct: 240 LET-EETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDI 298
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R
Sbjct: 299 LVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLR 358
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA 236
++ER + E + P ++V + ++ A L +++E F L E DA
Sbjct: 359 TIERVTKSQMEEIQLPQRDEVAAARVAKLGAELETEKESKALENFAGLISTLQESLEVDA 418
Query: 237 --LAAAL 241
LAA L
Sbjct: 419 ATLAAML 425
>gi|85057334|ref|YP_456250.1| superfamily II DNA/RNA helicase [Aster yellows witches'-broom
phytoplasma AYWB]
gi|84789439|gb|ABC65171.1| superfamily II DNA and RNA helicase [Aster yellows witches'-broom
phytoplasma AYWB]
Length = 547
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 143/255 (56%), Gaps = 24/255 (9%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL----AEGIKLYAIS-----TTATSK 51
+LFSAT+P ++KK++ KY +D K+ + I + AI K
Sbjct: 181 VLFSATLPPFIKKIASKY-----------QKDTKILQVPVKNIAVNAIEQNYFLVKEVDK 229
Query: 52 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGF 110
+L L+ + K TI+F TK+D DE++ L ++A+HGD+ Q+QR+ +N F
Sbjct: 230 AKLLVRLLDL-KKDYSTILFANTKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNF 288
Query: 111 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 170
R+GK +L+ATDVAARGLDI ++ ++I+Y+LP++ E +VHR GRTGRAGK+G A + +
Sbjct: 289 RKGKIKILIATDVAARGLDISDIKMVINYDLPHEDEVYVHRIGRTGRAGKKGLAYSLISP 348
Query: 171 SQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPT--AQRL 228
+ ++ LE + K + P V+ + +A+ + + + ++ E TP AQ+L
Sbjct: 349 RKVSQLKKLEYYLKEKITLLDIPSVQSIKLQNAKDLEKKILNIIEKNKEETTPNPLAQKL 408
Query: 229 IEEKGTDALAAALAQ 243
+E ++ + L +
Sbjct: 409 LENFSSEQIIQGLLK 423
>gi|153840451|ref|ZP_01993118.1| cold-shock deAd box protein a, partial [Vibrio parahaemolyticus
AQ3810]
gi|149745886|gb|EDM57016.1| cold-shock deAd box protein a [Vibrio parahaemolyticus AQ3810]
Length = 473
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 142/254 (55%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K + ++L +P+ +D+ G + ++ K +S L+
Sbjct: 14 VLFSATMPPMLKNIVERFLRDPVTVDVAGKN--HTVDKVQQQFWVVKGVEKDEAMSRLLE 71
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +LV
Sbjct: 72 T-EETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 130
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 131 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 190
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTD--A 236
ER E + P+ + V E+ ++ A L ++++ F ++L D
Sbjct: 191 ERVTKSSMEEIQLPLRDQVAEARLNKLAAELEAEKEHKALDKFAELVEKLQTSLEIDPAM 250
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 251 LAAMLLKRQQGKRP 264
>gi|33240544|ref|NP_875486.1| superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33238072|gb|AAQ00139.1| Superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 603
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 125/204 (61%), Gaps = 14/204 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP ++KLS++YL +P I + + E A+ I+ + I+ + K +L ++
Sbjct: 229 VLFSATMPPEIRKLSKRYLRDPAEITIKAKKKE--AQLIRQHYITVQNSYKLEVLRRVLE 286
Query: 61 V-YAKGGKTIVFTQTKRDADEVSLALT-SIIASE----ALHGDISQHQRERTLNGFRQGK 114
+ Y +G I+F +TK ++L L S+ AS L+GD+ Q+ RERT+ RQG
Sbjct: 287 LNYGEG--VIIFARTK----AITLKLAESLEASNHNVAVLNGDVPQNLRERTVERLRQGG 340
Query: 115 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 174
+LVATDVAARGLD+ + L+I+Y++P D E +VHR GRTGRAG+ G AIL + +R
Sbjct: 341 INILVATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFISPRERS 400
Query: 175 TVRSLERDVGCKFEFVSPPVVEDV 198
+ +LER VG E + P E +
Sbjct: 401 YLNNLERAVGQSIERMEIPNNESI 424
>gi|260774297|ref|ZP_05883212.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14]
gi|260611258|gb|EEX36462.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14]
Length = 633
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 145/254 (57%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP VK + ++L +P +D+ G+ ++ +A+ + Y + K ++ L+
Sbjct: 184 VLFSATMPPIVKDIVDRFLRDPARVDVAGS-NQTVAKVEQQYWV-VKGVEKDEAMARLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLIARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P ++ + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRINHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDA-- 236
ER E + P + V ES Q+ L ++E F ++L DA
Sbjct: 361 ERVTRTSMEEIQLPHRDKVAESRLTQLGLELEADKDHAALEKFAELVEKLQASLEVDATT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAILLKRQQGKRP 434
>gi|255654809|ref|ZP_05400218.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-23m63]
gi|296449553|ref|ZP_06891330.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
gi|296878124|ref|ZP_06902139.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
gi|296261617|gb|EFH08435.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
gi|296430877|gb|EFH16709.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
Length = 537
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 139/252 (55%), Gaps = 15/252 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
FSATMP + +L+++Y +P +I +V + E K Y I T +++K +L L+ V
Sbjct: 183 FFSATMPRGILELTKRYQKDPEHIKVV--RKELTVSNTKQYYIETRSSNKLEVLCRLVDV 240
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
Y ++VF TKR ADE+ L + ++ALHGD+ Q QR+ ++ FR G +LVA
Sbjct: 241 Y-DPKLSVVFCNTKRKADELVGDLQARGYFADALHGDLKQTQRDIVMDKFRNGTIDILVA 299
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARG+D+ +V+ + +Y+LP D E +VHR GRTGRAG+EG + + R ++ +E
Sbjct: 300 TDVAARGIDVDDVECVFNYDLPQDEEYYVHRIGRTGRAGREGMSFTFVFGKEMRKMKDIE 359
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVE--FFTPTAQRLI-----EEKG 233
R K + P + DV E+ V T +++E T Q L E+
Sbjct: 360 RYTKSKLIKHNIPTITDV----EEKKVGTFFAQVKQTIEEGHLTKQLQWLENFCNDEDYA 415
Query: 234 TDALAAALAQLS 245
+AAAL +LS
Sbjct: 416 MVDIAAALVKLS 427
>gi|282852614|ref|ZP_06261956.1| ATP-dependent RNA helicase DeaD family protein [Lactobacillus
gasseri 224-1]
gi|282556356|gb|EFB61976.1| ATP-dependent RNA helicase DeaD family protein [Lactobacillus
gasseri 224-1]
Length = 452
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 139/250 (55%), Gaps = 11/250 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP + ++ K++ +P + + G E A I Y + K IL LI
Sbjct: 145 LLFSATMPKPILRIGEKFMHDPEIVKIKGK--ELTANLIDQYFVRAKENEKFDILCRLID 202
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTVLV 119
V ++F +TKR DE++ L + + A +HGD+SQ +R L FR+GK +LV
Sbjct: 203 V-QNPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 261
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++P DP+++VHR GRTGRAG+ G ++ T ++ +R++
Sbjct: 262 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTI 321
Query: 180 ERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
E+ K + PP E+ L ++ ++V L+G + ++ T +Q L + D
Sbjct: 322 EQLTHKKMMLLKPPTDEEAFKGQLSAANKKVTELLDG---DLSKYTTEASQLLDDYSAVD 378
Query: 236 ALAAALAQLS 245
+AA L LS
Sbjct: 379 LVAALLKNLS 388
>gi|315499118|ref|YP_004087922.1| dead/deah box helicase domain-containing protein [Asticcacaulis
excentricus CB 48]
gi|315417130|gb|ADU13771.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB
48]
Length = 605
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 113/184 (61%), Gaps = 8/184 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+ FSATMP + L+ + L NP +++ + AE + I KR +LS+L
Sbjct: 184 LFFSATMPKEIAGLANELLTNPKKVEIT--PEATTAERVTQQVIFIEQQRKRALLSEL-- 239
Query: 61 VYA--KGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
YA K +T++FT+TKR AD V+ L + + + A+HGD +Q QRER L F+ G+
Sbjct: 240 -YADEKLARTLIFTRTKRGADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFKAGRVRA 298
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATD+AARG+D+ NV +I+YELP E +VHR GRT RAGKEG +I + +R+ ++
Sbjct: 299 LVATDIAARGIDVDNVTHVINYELPFVAEAYVHRIGRTARAGKEGHSITLVADDERKLLK 358
Query: 178 SLER 181
+ER
Sbjct: 359 DIER 362
>gi|218676896|ref|YP_002395715.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
gi|218325164|emb|CAV27059.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
Length = 689
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 142/247 (57%), Gaps = 11/247 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQD--EKLAEGIKLYAISTTATSKRTILSDL 58
+LFSATMP VK + +YL NP +D+ G +K+A+ Y + K +S L
Sbjct: 212 VLFSATMPPMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQN---YWV-VKGVEKDEAMSRL 267
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
+ + +IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +
Sbjct: 268 LET-EETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDI 326
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R
Sbjct: 327 LVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLR 386
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA 236
++ER + E + P ++V + ++ A L +++E F L E DA
Sbjct: 387 TIERVTKSQMEEIQLPQRDEVAAARVAKLGAELETEKESKALENFAGLISTLQESLEVDA 446
Query: 237 --LAAAL 241
LAA L
Sbjct: 447 ATLAAML 453
>gi|433457741|ref|ZP_20415720.1| DNA/RNA helicase [Arthrobacter crystallopoietes BAB-32]
gi|432194443|gb|ELK51067.1| DNA/RNA helicase [Arthrobacter crystallopoietes BAB-32]
Length = 635
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 139/256 (54%), Gaps = 13/256 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ ++++++KYL +P I + I+ + K ++ ++
Sbjct: 205 LFSATMPTAIRRIAKKYLKDPAEISV--KSKTSTGTNIRQRYVQVMGAHKLDAMTRILET 262
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I F +TK ++++ L + + A++GDI Q QRERT+ R+GK +LVA
Sbjct: 263 EEFDG-VIAFVRTKMATEDLADKLKARGFTAAAINGDIPQQQRERTVEALREGKIDILVA 321
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P+D E++VHR GRTGRAG+ G AIL T ++ +R++E
Sbjct: 322 TDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRTGDAILFMTPREKYLLRAIE 381
Query: 181 RDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
+ E + P V+ V LE A ++ TL E + F ++ A
Sbjct: 382 KATRQSVELMHLPTVDTVNANRLEKFAGRITETLES---EDLAVFRELVEKYEANHDVTA 438
Query: 237 --LAAALAQLSGFSRP 250
+AAALA ++ RP
Sbjct: 439 VEIAAALAHMAQGGRP 454
>gi|381199918|ref|ZP_09907063.1| DEAD/DEAH box helicase domain-containing protein [Sphingobium
yanoikuyae XLDN2-5]
Length = 583
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 164/337 (48%), Gaps = 18/337 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP + ++++Y + L I VG +E+ I A++ + + +L+
Sbjct: 187 LLFSATMPKPIVAMAKRYQSDALRISTVG--EERGHGDISYQAVTVAPSDIENAVVNLLR 244
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y + I+F T+ + + +LT A+ AL G+ SQ++R L R + V V
Sbjct: 245 -YHEAETAILFCATRDNVRHLHSSLTERGFAAVALSGEHSQNERNHALQALRDKRARVCV 303
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+P++ L++H ELP D ET HRSGRTGRAGK+GTA+L+ +RR V S+
Sbjct: 304 ATDVAARGIDLPSLTLVVHVELPRDAETMQHRSGRTGRAGKKGTAVLIVPYPRRRRVESM 363
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
R E+ +PP E +LE ++ +TL E E L+ EK +AA
Sbjct: 364 LRGAKIPVEWGTPPSKEAILEQDNARLRSTLME-KAELDEADWALGAELLAEKSAKEIAA 422
Query: 240 ALAQLSGFSRPPSSRSLINHEQ---------GWVTLQLTRDSAFSRGFMSARSVMGFLSD 290
L + + S P L E G+ Q R R R ++ +
Sbjct: 423 MLVKSARASLPAPEELLDRSEAPPRQEGPRPGFEDTQWFRMDIGRRQNADPRWILPLICR 482
Query: 291 VYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 327
+ +IG I I ++ +F++P IA ++
Sbjct: 483 RGHVSRGDIGAIRITTNE----TMFEIPRAIASRFMS 515
>gi|347735337|ref|ZP_08868231.1| ATP-dependent RNA helicase RhlE [Azospirillum amazonense Y2]
gi|346921472|gb|EGY02178.1| ATP-dependent RNA helicase RhlE [Azospirillum amazonense Y2]
Length = 387
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/184 (43%), Positives = 117/184 (63%), Gaps = 5/184 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+ FSATMP+ V +L+ K L +PL +++ AE I+ I A KR +L DLI
Sbjct: 184 LFFSATMPADVSELAGKMLRDPLRVEV--TPVSTTAERIEQKVIFVPAAEKRHVLVDLIR 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
A ++IVFT+TK A+ VS L I + A+HG+ SQ+ R++ L+GFR G VLV
Sbjct: 242 GDAGMQRSIVFTRTKHGANRVSAQLEQAGIEAAAIHGNKSQNARQKALDGFRAGTVRVLV 301
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS--SQRRTVR 177
ATD+AARG+D+ V ++++ELPN+PET+VHR GRT RAG G A+ + T+ +R +R
Sbjct: 302 ATDIAARGIDVDGVTHVVNFELPNEPETYVHRIGRTARAGASGVAVSLCTADGDERIYLR 361
Query: 178 SLER 181
+E+
Sbjct: 362 DIEK 365
>gi|383755140|ref|YP_005434043.1| putative DEAD-box ATP-dependent RNA helicase CshA [Selenomonas
ruminantium subsp. lactilytica TAM6421]
gi|381367192|dbj|BAL84020.1| putative DEAD-box ATP-dependent RNA helicase CshA [Selenomonas
ruminantium subsp. lactilytica TAM6421]
Length = 526
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 127/221 (57%), Gaps = 14/221 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP ++KLSR+Y+++P + + E + + I R L
Sbjct: 183 LLFSATMPGPIEKLSRRYMEHPQRVTIT-------KENLTVPLIDQLYYETREKFEGLCR 235
Query: 61 VY--AKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
V + GK I+F +TKR D+++ +L + ++ LHGD+SQ QR+R + FR+G+ +
Sbjct: 236 VLDVEETGKLIIFCRTKRAVDDLTASLEARGYSAGGLHGDLSQIQRDRVMKRFREGRIDI 295
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
L+ATDVAARG+DI ++ +I+Y++P D E++VHR GRTGRAG++G A+ + R +R
Sbjct: 296 LIATDVAARGIDIDDITHVINYDIPQDHESYVHRIGRTGRAGRKGVAMTFIEPKEYRQLR 355
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSA----EQVVATLNGVH 214
+ + K + P D+LE E++V TL H
Sbjct: 356 LIMKLAHTKIQRKELPTASDLLERQKDLVQERLVKTLQQNH 396
>gi|332293226|ref|YP_004431835.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
gi|332171312|gb|AEE20567.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
Length = 644
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 144/240 (60%), Gaps = 9/240 (3%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTI--LSDLI 59
LFSATMP V +++++++ NPL I VG+++E Y + T + + LSD
Sbjct: 181 LFSATMPREVSRIAKEFMVNPLEI-TVGHKNEGAKNVSHEYFVVHTRDRYQALKRLSDA- 238
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
+++F +TKRD +V+ L + ALHGD+SQ+QR+ + FR + +L
Sbjct: 239 ---NPDIFSVIFCRTKRDTQKVAEQLIEDGYNAGALHGDLSQNQRDLVMKSFRNRQIQML 295
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARG+D+ ++ +++Y+LP++ ET+ HRSGRTGRAGK GT++++ T S+ R ++
Sbjct: 296 VATDVAARGIDVDDITHVVNYQLPDEIETYTHRSGRTGRAGKTGTSLVIVTKSEMRKIKQ 355
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES-VEFFTPTAQRLIEEKGTDAL 237
LE+ +G KFE + P +++ + + ++N + ++ + P + ++++ + L
Sbjct: 356 LEKILGKKFEQKTIPDGKEITQVQLFHLANSINTTEINNEIDAYLPEIEEVLKDNTKEEL 415
>gi|119718818|ref|YP_925783.1| DEAD/DEAH box helicase [Nocardioides sp. JS614]
gi|119539479|gb|ABL84096.1| ATP-dependent RNA helicase CsdA [Nocardioides sp. JS614]
Length = 589
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 122/198 (61%), Gaps = 4/198 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ ++++S+KYLD+P I + G A I ++ + K L+ ++ V
Sbjct: 193 LFSATMPAQIRRISKKYLDDPAEITVKGKT--ATASNITQRYLTVSYPQKVDALTRILEV 250
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G IVF +TK + + ++ L + +++ A++GD++Q QRERT+N + GK +LVA
Sbjct: 251 ENFEG-MIVFVRTKNETETLAEKLRARGLSAMAINGDVAQAQRERTVNQLKSGKLDILVA 309
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P D E++VHR GRTGRAG+ G AI T +R ++ +E
Sbjct: 310 TDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFVTPRERYLLKHIE 369
Query: 181 RDVGCKFEFVSPPVVEDV 198
+ + P VEDV
Sbjct: 370 KATRQPLTQMQLPTVEDV 387
>gi|408492465|ref|YP_006868834.1| ATP-dependent RNA helicase DbpA-like protein [Psychroflexus torquis
ATCC 700755]
gi|408469740|gb|AFU70084.1| ATP-dependent RNA helicase DbpA-like protein [Psychroflexus torquis
ATCC 700755]
Length = 586
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 121/191 (63%), Gaps = 12/191 (6%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAI----STTATSKRTILSD 57
LFSATMP V +++K++ NP I VG ++ Y I + KR + ++
Sbjct: 182 LFSATMPKEVSIIAKKFMKNPKEI-TVGQKNISTKSVSHEYFIVGGRDRYSAVKRVVDAN 240
Query: 58 LITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFT 116
+YA +VF +TKRDA +V+ L ++ ALHGD+SQ QR+ +N FR+ +
Sbjct: 241 P-DIYA-----VVFCRTKRDAQKVAEKLIEDGYSASALHGDLSQAQRDMVMNSFRRKQIQ 294
Query: 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 176
+LVATDVAARG+D+ ++ +I+Y+LP++ E + HRSGRTGRAGKEG ++++ T S+ R +
Sbjct: 295 MLVATDVAARGIDVDDITHVINYQLPDEIEIYTHRSGRTGRAGKEGKSLVIVTKSEVRKI 354
Query: 177 RSLERDVGCKF 187
+ +ER +G KF
Sbjct: 355 KQVERMIGQKF 365
>gi|91225696|ref|ZP_01260725.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 12G01]
gi|269966740|ref|ZP_06180817.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 40B]
gi|91189585|gb|EAS75860.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 12G01]
gi|269828663|gb|EEZ82920.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 40B]
Length = 643
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 143/254 (56%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +KK+ ++L +P+ +D+ G + ++ K +S L+
Sbjct: 184 VLFSATMPPMLKKIVERFLRDPVTVDVAGKN--HTVDKVQQQFWVVKGVEKDEAMSRLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTD--A 236
ER E + P+ + V E+ ++ A L ++++ F ++L D
Sbjct: 361 ERVTKSSMEEIQLPLRDQVAEARLAKLGAELEAEKEHKALDKFAELVEKLQTSLDIDPAT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAMLLKRQQGKRP 434
>gi|407068769|ref|ZP_11099607.1| ATP-dependent RNA helicase [Vibrio cyclitrophicus ZF14]
Length = 662
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 140/247 (56%), Gaps = 11/247 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQD--EKLAEGIKLYAISTTATSKRTILSDL 58
+LFSATMP VK + +YL NP +D+ G +K+A+ + K +S L
Sbjct: 184 VLFSATMPPMVKTIVDRYLRNPARVDVAGTNHTVDKVAQNFWV----VKGVEKDEAMSRL 239
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
+ + +IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +
Sbjct: 240 LET-EETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDI 298
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R
Sbjct: 299 LVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLR 358
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA 236
++ER E + P+ + V + ++ A L +++E F L E DA
Sbjct: 359 TIERVTKSSMEEIQLPLRDQVAAARVAKLGAELETEKESKALENFAGLISTLQESLEVDA 418
Query: 237 --LAAAL 241
LAA L
Sbjct: 419 ATLAAML 425
>gi|343497470|ref|ZP_08735537.1| cold-shock DEAD-box protein A [Vibrio nigripulchritudo ATCC 27043]
gi|342818317|gb|EGU53184.1| cold-shock DEAD-box protein A [Vibrio nigripulchritudo ATCC 27043]
Length = 621
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 143/254 (56%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K + ++L NP +ID+ G + ++ K +S L+
Sbjct: 184 VLFSATMPPMLKNIVERFLRNPEHIDVAGKN--HTVDKVEQQFWVVKGVEKDEAMSRLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA-- 236
ER E + P+ + V E+ ++ L +S++ F ++L E DA
Sbjct: 361 ERVTKSSMEEIQLPLRDKVAEARLVKLGNELTADKEHKSLDKFGELVEKLQESLEIDATT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAILLKRQQGKRP 434
>gi|333989860|ref|YP_004522474.1| cold-shock DEAD-box protein DeaD [Mycobacterium sp. JDM601]
gi|333485828|gb|AEF35220.1| cold-shock DEAD-box protein DeaD [Mycobacterium sp. JDM601]
Length = 547
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 119/198 (60%), Gaps = 4/198 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +++++ +YL +P+ + + AE I I K L+ ++ V
Sbjct: 169 LFSATMPPAIRRITTRYLHDPVEVTV--EAKTTTAENISQRYIEVAGPRKMDALTRVLEV 226
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
IVF +TK+ +EV+ L + A+ A++GDI+Q QRERT+ + G +LVA
Sbjct: 227 ETFEA-MIVFVRTKQATEEVAEKLRARGFAAAAINGDIAQAQRERTIASLKSGNIDILVA 285
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P+D E +VHR GRTGRAG+ GTA+L + +R ++++E
Sbjct: 286 TDVAARGLDVERISHVVNYDIPHDTEAYVHRIGRTGRAGRSGTALLFVSPRERHLLKAIE 345
Query: 181 RDVGCKFEFVSPPVVEDV 198
R K + P VEDV
Sbjct: 346 RATRQKLTESTLPTVEDV 363
>gi|126698341|ref|YP_001087238.1| ATP-dependent RNA helicase [Clostridium difficile 630]
gi|254974380|ref|ZP_05270852.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-66c26]
gi|255091773|ref|ZP_05321251.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP
107932]
gi|255099876|ref|ZP_05328853.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-63q42]
gi|255305765|ref|ZP_05349937.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC
43255]
gi|255313504|ref|ZP_05355087.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-76w55]
gi|255516192|ref|ZP_05383868.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-97b34]
gi|255649288|ref|ZP_05396190.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-37x79]
gi|260682458|ref|YP_003213743.1| ATP-dependent RNA helicase [Clostridium difficile CD196]
gi|260686057|ref|YP_003217190.1| ATP-dependent RNA helicase [Clostridium difficile R20291]
gi|306519386|ref|ZP_07405733.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-32g58]
gi|384360039|ref|YP_006197891.1| putative ATP-dependent RNA helicase [Clostridium difficile BI1]
gi|423082109|ref|ZP_17070704.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 002-P50-2011]
gi|423085713|ref|ZP_17074155.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 050-P50-2011]
gi|423090412|ref|ZP_17078711.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 70-100-2010]
gi|115249778|emb|CAJ67595.1| putative ATP-dependent RNA helicase [Clostridium difficile 630]
gi|260208621|emb|CBA61352.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
gi|260212073|emb|CBE02663.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
gi|357549359|gb|EHJ31206.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 002-P50-2011]
gi|357549630|gb|EHJ31476.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 050-P50-2011]
gi|357556521|gb|EHJ38116.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 70-100-2010]
Length = 537
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 139/252 (55%), Gaps = 15/252 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
FSATMP + +L+++Y +P +I +V + E K Y I T +++K +L L+ V
Sbjct: 183 FFSATMPRGILELTKRYQKDPEHIKVV--RKELTVSNTKQYYIETRSSNKLEVLCRLVDV 240
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
Y ++VF TKR ADE+ L + ++ALHGD+ Q QR+ ++ FR G +LVA
Sbjct: 241 Y-DPKLSVVFCNTKRKADELVGDLQARGYFADALHGDLKQTQRDIVMDKFRNGTIDILVA 299
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARG+D+ +V+ + +Y+LP D E +VHR GRTGRAG+EG + + R ++ +E
Sbjct: 300 TDVAARGIDVDDVECVFNYDLPQDEEYYVHRIGRTGRAGREGMSFTFVFGKEMRKMKDIE 359
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVE--FFTPTAQRLI-----EEKG 233
R K + P + DV E+ V T +++E T Q L E+
Sbjct: 360 RYTKSKLIKHNIPTITDV----EEKKVGTFFAQVKQTIEEGHLTKQLQWLEGFCNDEDYA 415
Query: 234 TDALAAALAQLS 245
+AAAL +LS
Sbjct: 416 MVDIAAALVKLS 427
>gi|308071203|ref|YP_003872808.1| ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
gi|305860482|gb|ADM72270.1| Probable ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
Length = 559
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 118/188 (62%), Gaps = 3/188 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+ ++KL+R Y++ P+++ + +++ I+ + TT K+ L D++
Sbjct: 190 MLFSATMPAGIRKLARVYMNEPVDVKVKSASSVPVSQ-IRQVVVQTTDRGKQQALVDMLN 248
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ ++F +TKR A +++ L + S LHGD+SQ++RE+ + FR+ K +LV
Sbjct: 249 T-DRPYLAVIFCRTKRRAAKLNEELQEMGFESGELHGDLSQNKREQVMKAFREAKLQLLV 307
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ V + +Y++P D E+++HR GRTGRAG +G A+ + T +R++
Sbjct: 308 ATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPELRNI 367
Query: 180 ERDVGCKF 187
+R G F
Sbjct: 368 QRVAGVTF 375
>gi|331268314|ref|YP_004394806.1| ATP-dependent RNA helicase [Clostridium botulinum BKT015925]
gi|329124864|gb|AEB74809.1| ATP-dependent RNA helicase [Clostridium botulinum BKT015925]
Length = 528
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 121/360 (33%), Positives = 179/360 (49%), Gaps = 32/360 (8%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATM + +LS+KY +N I +V Q I+ + +K +LS LI
Sbjct: 182 ILFSATMAKAIIELSKKYQNNAEFIKVVHKQ--LTVPNIEQRYLEVKENNKLEVLSRLID 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +++F TK+ DEV L + +E LHGD+ Q QR+R +N FR G +LV
Sbjct: 240 M-RNPKLSVIFCNTKKRVDEVVSQLQARGYFAEGLHGDMKQPQRDRVMNKFRNGTIEILV 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ +V+ + +Y+LP D E +VHR GRTGRAG+ G A R +R +
Sbjct: 299 ATDVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRSGIAFTFVAGKAIRKLRDI 358
Query: 180 ERDVGCKFEFVSPPVVEDVLESSA----EQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
ER K + P DV E A E+V T+ H ++ L E+ T
Sbjct: 359 ERYTKTKVKRAEIPSASDVEEFKANTFLEKVKNTIEEGHLG--KYIDYIENLLDEDYATI 416
Query: 236 ALAAALAQLS-GFSRPPSSRSLINH------EQGWVTL--QLTRDSAFSRGFMSARSVMG 286
+AAAL ++S G + ++ + E G V L + R++ + AR V+G
Sbjct: 417 DIAAALLKMSLGEEKKEEILNISDDIGDTGAEPGMVRLFINIGRNNK-----VQARDVIG 471
Query: 287 FLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTI--SKITKLPA 344
++ A IGKI I + ++P+E AKE+L +I NTI KI PA
Sbjct: 472 AIAGETGIAGKVIGKIDIYD----KFTFVEVPKENAKEVL--EIMKNNTIKGKKINIEPA 525
>gi|390454874|ref|ZP_10240402.1| DEAD/DEAH box helicase [Paenibacillus peoriae KCTC 3763]
Length = 524
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 119/188 (63%), Gaps = 3/188 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+ ++KL+R Y++ P+++ + +++ I+ + TT K+ L D++
Sbjct: 180 MLFSATMPAGIRKLARVYMNEPIDVKVKSASSVPVSQ-IRQVVVQTTDRGKQRALVDMLN 238
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ ++F +TKR A +++ L + AS LHGD+SQ++RE+ + FR+ K +LV
Sbjct: 239 T-DRPYLAVIFCRTKRRAAKLNEELQEMGFASGELHGDLSQNKREQVMKAFREAKLQLLV 297
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ V + +Y++P D E+++HR GRTGRAG +G A+ + T +R++
Sbjct: 298 ATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPELRNI 357
Query: 180 ERDVGCKF 187
++ G F
Sbjct: 358 QKVAGVTF 365
>gi|385832194|ref|YP_005869969.1| ATP-dependent RNA helicase [Lactococcus garvieae Lg2]
gi|343181347|dbj|BAK59685.1| ATP-dependent RNA helicase [Lactococcus garvieae Lg2]
Length = 534
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 137/249 (55%), Gaps = 9/249 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +KK+ K++ NP +I + E A+ I Y I T K +L+ L+
Sbjct: 178 LLFSATMPNDIKKIGVKFMKNPEHIKVAAK--EMTADRIDQYFIKTKEFEKFDVLTRLLD 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V + IVF +TKR DE++ L +E +HGD+ Q++R R L F+ G +LV
Sbjct: 236 V-ERPELAIVFGRTKRRVDEITRGLKLRGYRAEGIHGDLDQNKRLRVLRDFKGGHLDILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++ D E++VHR GRTGRAGK G ++ + ++ +R++
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAI 354
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-----NGVHPESVEFFTPTAQRLIEEKGT 234
E+ + + + PP ED ++S + + +G + F A++L+ E
Sbjct: 355 EKLTKKEMKGMRPPTKEDAYQASLSVAMDEIKRDLQDGSLKGKLTKFDADAEQLLAEYDV 414
Query: 235 DALAAALAQ 243
L A L Q
Sbjct: 415 KELVAMLIQ 423
>gi|390947284|ref|YP_006411044.1| DNA/RNA helicase [Alistipes finegoldii DSM 17242]
gi|390423853|gb|AFL78359.1| DNA/RNA helicase, superfamily II [Alistipes finegoldii DSM 17242]
Length = 653
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 144/249 (57%), Gaps = 9/249 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI--KLYAISTTATSKRTILSDL 58
+LFSATMP + +LS+ Y+ + ++V ++++L + ++Y K L+ +
Sbjct: 183 LLFSATMPERIIRLSKTYMRD---TEIVRVENKQLTTDLTEQIY-FEVREADKFDALTRI 238
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
I V + I+F +TK ADE + L + A+E LHGD+SQ QRE+ L FR +
Sbjct: 239 IDVEPEF-YGIIFARTKIGADETASRLAARGYAAEVLHGDVSQAQREKILRKFRDRSVNI 297
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARG+D+ N+ +I+Y LP D E++VHR GRTGRAGK+GTAI + S+ R +
Sbjct: 298 LVATDVAARGIDVGNLTHVINYSLPQDSESYVHRIGRTGRAGKQGTAITFVSPSEFRGLN 357
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA 236
+L RD+ + + + P +D++E ++ + V ES + + A+ L+ E D
Sbjct: 358 NLMRDIKVEIKRETLPSPQDIVEMKRLKIKDEMQEIVENESYDGYREFAEELLAEYTPDV 417
Query: 237 LAAALAQLS 245
AL +L+
Sbjct: 418 ALGALLRLA 426
>gi|417322261|ref|ZP_12108795.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus 10329]
gi|328470415|gb|EGF41326.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus 10329]
Length = 643
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 142/254 (55%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K + ++L +P+ +D+ G + ++ K +S L+
Sbjct: 184 VLFSATMPPMLKNIVERFLRDPVTVDVAGKN--HTVDKVQQQFWVVKGVEKDEAMSRLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTD--A 236
ER E + P+ + V E+ ++ A L ++++ F ++L D
Sbjct: 361 ERVTKSSMEEIQLPLRDQVAEARLNKLAAELEAEKEHKALDKFAELVEKLQTSLEIDPAM 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAMLLKRQQGKRP 434
>gi|348030292|ref|YP_004872978.1| ATP-dependent RNA helicase [Glaciecola nitratireducens FR1064]
gi|347947635|gb|AEP30985.1| ATP-dependent RNA helicase [Glaciecola nitratireducens FR1064]
Length = 584
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 141/253 (55%), Gaps = 7/253 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +KK++++YL NP ++ + A I+ K L+ ++ V
Sbjct: 186 LFSATMPDAIKKITKRYLKNPEHVKIESTVSS--ASMIRQRYCQVAGHHKLEALTRIMEV 243
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +TK E++ LT+ E L+GDI Q+ RERT+ ++G +LVA
Sbjct: 244 EEFDG-MIIFVRTKTATVELADKLTARGHVVEPLNGDIPQNSRERTVEKLKRGDIDILVA 302
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDV ARGLD+ V +I+Y++P D E++VHR GRTGRAG+ G AIL + ++R + ++E
Sbjct: 303 TDVVARGLDVERVSHVINYDIPYDTESYVHRIGRTGRAGRTGDAILFISHREKRLLFAIE 362
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQV-VATLNGVHPESVEFFTPTAQRLIEEK--GTDAL 237
+ + E + P + + ES + + + + ES+E + P + ++EE D +
Sbjct: 363 KATKQRIENMEIPSISQLNESRLVRFKQSIIEAMSDESIESYIPIVESIMEETEASPDVI 422
Query: 238 AAALAQLSGFSRP 250
AALA+++ P
Sbjct: 423 MAALAKVAQGDEP 435
>gi|228473039|ref|ZP_04057796.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Capnocytophaga
gingivalis ATCC 33624]
gi|228275621|gb|EEK14398.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Capnocytophaga
gingivalis ATCC 33624]
Length = 588
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 136/233 (58%), Gaps = 26/233 (11%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEK---------LAEGIKLY-AISTTATSK 51
LFSATMP+ V K++++++ +P I +G++++ + G + Y A+ A +
Sbjct: 189 LFSATMPAEVAKIAKEFMHHPKEIT-IGHKNQASNNVLHECYIVNGRQRYEALKRLADAN 247
Query: 52 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGF 110
+I S +VF +TKRD V+ L + ALHGD+SQ+QR+ + GF
Sbjct: 248 PSIFS------------VVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKGF 295
Query: 111 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 170
R + +LVATDVAARG+D+ ++ +IHY+LP++ ET+ HRSGRTGRAGK G ++++ T
Sbjct: 296 RAKQIQMLVATDVAARGIDVDDITHVIHYQLPDEIETYTHRSGRTGRAGKSGVSMVILTK 355
Query: 171 SQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG--VHPESVEFF 221
S+ + ++++E+ + FE+ S P ++ E + T+ V+P E+
Sbjct: 356 SEAKRIKTIEKIIQKTFEYKSIPSGMEICEIQLYHLANTIKDTQVNPAVNEYL 408
>gi|354580517|ref|ZP_08999422.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
gi|353202948|gb|EHB68397.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
Length = 529
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 138/251 (54%), Gaps = 10/251 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP ++KL+ ++L +P ++ ++ A I I K LS L+
Sbjct: 179 LLFSATMPPNIQKLASQFLKDPEHVSVIPKHVS--APLIDQAYIEVPERQKFEALSRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL +++ LHGD+SQHQR+ + FR G VLV
Sbjct: 237 MESPE-LAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ V +++++LP DPE++VHR GRTGRAGKEGTA T + + +
Sbjct: 296 ATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLYFI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
ER + P + + +E AE+V+ ++ E E+ Q L +
Sbjct: 356 ERVTRHRIPRKPLPTMAEAIEGKQRVIAERVLEIID--QGELTEYKGLAIQLLEQYDSVQ 413
Query: 236 ALAAALAQLSG 246
LAAA+ L+G
Sbjct: 414 LLAAAMKLLTG 424
>gi|269962576|ref|ZP_06176923.1| ATP-dependent RNA helicase DeaD [Vibrio harveyi 1DA3]
gi|269832689|gb|EEZ86801.1| ATP-dependent RNA helicase DeaD [Vibrio harveyi 1DA3]
Length = 644
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 141/254 (55%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K + ++L P+ +D+ G + ++ K +S L+
Sbjct: 184 VLFSATMPPMLKNIVERFLREPVTVDVAGKN--HTVDKVQQQFWVVKGVEKDEAMSRLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTD--A 236
ER E + P+ + V E+ ++ A L +S++ F ++L D
Sbjct: 361 ERVTKSSMEEIQLPLRDQVAEARLSKLAAELEAEKEHKSLDKFAELVEKLQTSLEIDPAM 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAMLLKRQQGKRP 434
>gi|89092720|ref|ZP_01165673.1| putative ATP-dependent RNA helicase [Neptuniibacter caesariensis]
gi|89083232|gb|EAR62451.1| putative ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
Length = 427
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 119/198 (60%), Gaps = 4/198 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LF+AT V+ L+ YL+NP I + A+ I+ +A K ILS LIT
Sbjct: 185 LLFTATADESVEVLAEFYLNNPTKIKVTPRNST--AKQIRQFAYQVDYGQKADILSYLIT 242
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
K G+T+VF +TK+ DE++ L I + A+HG+ SQ +R R LN F G VLV
Sbjct: 243 -EGKWGQTLVFVRTKKRVDELTQYLCKEGINAAAIHGEKSQRERVRMLNEFIAGDLHVLV 301
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI ++ +++Y+LPN PE +VHR GRTGRAG+ G A+ + ++R ++ +
Sbjct: 302 ATDVAARGLDIESLPYVVNYDLPNQPEAYVHRIGRTGRAGETGEAVSLVAPAEREFLQRI 361
Query: 180 ERDVGCKFEFVSPPVVED 197
E+ + K + P +ED
Sbjct: 362 EKLIKQKIKLRPVPRIED 379
>gi|288870006|ref|ZP_06112545.2| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM
13479]
gi|288868832|gb|EFD01131.1| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM
13479]
Length = 561
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 135/248 (54%), Gaps = 7/248 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMP + ++ K+ P+ + +V + E + Y +K ++ L+
Sbjct: 182 VMFSATMPQAIADIAHKFQKEPVTVKVV--KKELTVPKVTQYYYEVKPKTKVEVMCRLLD 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+YA ++VF TK+ DE+ AL +E LHGD+ Q QR+R +N FR G+ +LV
Sbjct: 240 MYAPK-LSVVFCNTKKGVDELVQALQGRGYFAEGLHGDLKQIQRDRVMNSFRNGRTDILV 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ +V+ + +Y+LP D E +VHR GRTGRAG+EG A + +R +
Sbjct: 299 ATDVAARGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGREGIAFSFVVGKEVYKLRDI 358
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES--VEFFTPTAQRLIEEKGTDA- 236
+R K + P + DV ++++ + ES E ++L+EE T
Sbjct: 359 QRYCKTKIIPQAIPSLNDVTGIKVDKILENVADTIEESDLSEMINILEKKLLEEDYTSLD 418
Query: 237 LAAALAQL 244
LAAAL ++
Sbjct: 419 LAAALLKM 426
>gi|304383161|ref|ZP_07365635.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella marshii
DSM 16973]
gi|304335738|gb|EFM01994.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella marshii
DSM 16973]
Length = 608
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 127/208 (61%), Gaps = 4/208 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATM ++K++R YL + I +VG+++E AE + A K L ++
Sbjct: 181 LLFSATMSREIEKIARNYLHDHKEI-VVGSRNEG-AENVNHIYYMVNAKDKYLALKRIVD 238
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y I+F +TKR+ EV+ L +E LHGD+SQ QR+ T+ FRQ LV
Sbjct: 239 YYPHIF-AIIFCRTKRETQEVADKLIHDGYNAEPLHGDLSQPQRDLTMQKFRQHMTQFLV 297
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ ++ +I+Y LP+D E++ HRSGRTGRAGK+GT+I + + +R +R++
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDVESYTHRSGRTGRAGKKGTSIAIIHTRERSKMRAI 357
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVV 207
E+ +G KF+ + P +++ +V+
Sbjct: 358 EKIIGKKFDEGTIPTAKEICSKQLYKVM 385
>gi|162148769|ref|YP_001603230.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter diazotrophicus
PAl 5]
gi|161787346|emb|CAP56941.1| putative ATP-dependent RNA helicase rhlE [Gluconacetobacter
diazotrophicus PAl 5]
Length = 390
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 117/193 (60%), Gaps = 4/193 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATM + L R+ L PL I + I+ I T A K L ++
Sbjct: 200 LLFSATMSPAISALGRQLLHKPLQI--APPEQAAPPPRIRQQVIFTPAARKAASLLAVLR 257
Query: 61 VYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
A GG+T+VFT+TK+ AD ++ L T + + ALHGD Q +R+RTL+ FR+G+ VLV
Sbjct: 258 REA-GGRTMVFTRTKQAADALARTLNTGGVTAAALHGDHGQVRRDRTLDDFRRGRLLVLV 316
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARG+D+ V L++++++P PET++HR GRT RAG+ GTA+ + ++R +R +
Sbjct: 317 ATDVMARGIDVEGVALVVNFDIPEQPETYIHRIGRTARAGRRGTALSLCDPAERLKLRDI 376
Query: 180 ERDVGCKFEFVSP 192
ER G + + P
Sbjct: 377 ERQSGARITVIDP 389
>gi|407475055|ref|YP_006789455.1| DEAD/DEAH box helicase [Clostridium acidurici 9a]
gi|407051563|gb|AFS79608.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium acidurici 9a]
Length = 526
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 161/311 (51%), Gaps = 12/311 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
MLFSATMP +K+L++ Y+ + +I +V N + Y ++ L ++
Sbjct: 181 MLFSATMPPQIKRLAKSYMKEDMKHISIVKNT--ITVSTVSQYYFEIKQNNRFESLCRIL 238
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
Y + I+F +TK+ DE+ L E +HGD++Q R TL F++G L
Sbjct: 239 D-YDEPSSAIIFCKTKKGVDELVEGLQVRGYNVEGMHGDMTQDHRMNTLRKFKEGNLEFL 297
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARG+DI ++ + +YELP D +++VHR GRTGRA ++GTA + T+ + R ++
Sbjct: 298 VATDVAARGIDIESITHVFNYELPQDSDSYVHRIGRTGRANRQGTAYTLVTAREYRFLKQ 357
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GVHPESVEFFTPTAQRLIEEKGTDAL 237
+E+D + P ++D+ S + +V + + + + F P L EE +
Sbjct: 358 IEKDTKGTIKRKELPTIDDIFLSKYKSIVGRVKETLSQDDYKRFVPLVTELDEEYSLVDV 417
Query: 238 AAALAQL---SGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPT 294
A+AL + S + S+ ++E G+V + L + + ++ + ++ F+ +
Sbjct: 418 ASALMYMVYTKEISYEYTENSISSNEGGFVRVFL---NVGRKDKLNPKKLITFIKESARI 474
Query: 295 AADEIGKIHII 305
DEIG I I+
Sbjct: 475 RGDEIGDIDIL 485
>gi|343510603|ref|ZP_08747826.1| cold-shock DEAD-box protein A [Vibrio scophthalmi LMG 19158]
gi|342801572|gb|EGU37032.1| cold-shock DEAD-box protein A [Vibrio scophthalmi LMG 19158]
Length = 679
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 142/254 (55%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K + ++L P+ +D+ G + ++ K +S L+
Sbjct: 184 VLFSATMPPMLKNIVERFLREPVMVDVAGKN--HTVDKVEQQFWVVKGVEKDEAMSRLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L++ + ALHGDI Q RERT++ + G +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKTGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ +Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRGNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA-- 236
ER + E + P+ + V E+ ++ A L +++E F ++L E DA
Sbjct: 361 ERVTRSQMEEIQLPMRDQVAEARLIKLGAELEAEKEHKALEKFVELVEKLQESLEIDANT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAMLLKRQQGKRP 434
>gi|402814213|ref|ZP_10863807.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus alvei DSM
29]
gi|402508060|gb|EJW18581.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus alvei DSM
29]
Length = 487
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 121/190 (63%), Gaps = 6/190 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL-AEGIKLYAISTTATSKRTILSDLI 59
+LFSATMP+ V++L+ +++ +P++I + Q E++ + +K + TT +K+ L LI
Sbjct: 168 LLFSATMPANVRRLAERFMRSPIDIHV---QSERITVKNVKQIVVQTTDRAKQATLCKLI 224
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ + + I+F +TKR A +++ L + S+ LHGD+SQ +RE+ + FR K +L
Sbjct: 225 DEH-RPYQAIIFCRTKRRASKLNEELLELGYDSDELHGDLSQSKREQVMERFRNVKMQLL 283
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLD+ + + +Y++P D ++++HR GRTGRAG +G AI + R V
Sbjct: 284 VATDVAARGLDVEGITHVFNYDVPQDAKSYIHRIGRTGRAGAQGIAITFASPRDRMAVEL 343
Query: 179 LERDVGCKFE 188
+ER +G K E
Sbjct: 344 IERGIGQKLE 353
>gi|262403840|ref|ZP_06080398.1| cold-shock DEAD-box protein A [Vibrio sp. RC586]
gi|262350344|gb|EEY99479.1| cold-shock DEAD-box protein A [Vibrio sp. RC586]
Length = 643
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 145/254 (57%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP VK++ ++L NP +D+ G+ ++ +A+ + Y + K ++ L+
Sbjct: 184 VLFSATMPPMVKEIVERFLRNPECVDVAGS-NQTVAKVEQQYWV-VKGVEKDEAMARLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTDA-- 236
ER E + P + V ES ++ L S+E F ++L DA
Sbjct: 361 ERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFAELVEKLQASLEIDATT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAILLKRQQGKRP 434
>gi|148242659|ref|YP_001227816.1| superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
gi|147850969|emb|CAK28463.1| Superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
Length = 560
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 118/194 (60%), Gaps = 4/194 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K++S+++L NP + + + + A I+ I K + L ++
Sbjct: 193 VLFSATMPPEIKRISQQHLQNPAEVIIRTQKAD--ASRIRQRHILLPHQQKLSALLRVLE 250
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ GG I+F +TK V+ AL + IA L+GD+ Q RERT+ +QG+ VLV
Sbjct: 251 AHGPGG-VIIFARTKAVTVTVAEALEAEGIACSVLNGDVPQSLRERTIERLKQGRIDVLV 309
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ + L+++Y+ P D E +VHR GRTGRAG++G AIL + +RR + SL
Sbjct: 310 ATDVAARGLDVDRIGLVVNYDAPFDSEAYVHRIGRTGRAGRQGDAILFLSYRERRLLHSL 369
Query: 180 ERDVGCKFEFVSPP 193
ER VG + + P
Sbjct: 370 ERAVGSSIDAMDVP 383
>gi|334364237|ref|ZP_08513229.1| putative DEAD-box ATP-dependent RNA helicase CshA [Alistipes sp.
HGB5]
gi|313159432|gb|EFR58795.1| putative DEAD-box ATP-dependent RNA helicase CshA [Alistipes sp.
HGB5]
Length = 653
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 143/249 (57%), Gaps = 9/249 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI--KLYAISTTATSKRTILSDL 58
+LFSATMP + +LS+ Y+ + ++V ++++L + ++Y K L+ +
Sbjct: 183 LLFSATMPERIIRLSKTYMRD---TEIVRVENKQLTTDLTEQIY-FEVREADKFDALTRI 238
Query: 59 ITVYAKGGKTIVFTQTKRDADE-VSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
I V + I+F +TK ADE VS A+E LHGD+SQ QRE+ L FR +
Sbjct: 239 IDVEPEF-YGIIFARTKIGADETVSRLAARGYAAEVLHGDVSQAQREKILRKFRDRSVNI 297
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARG+D+ N+ +I+Y LP D E++VHR GRTGRAGK+GTAI + S+ R +
Sbjct: 298 LVATDVAARGIDVGNLTHVINYSLPQDSESYVHRIGRTGRAGKQGTAITFVSPSEFRGLN 357
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA 236
+L RD+ + + + P +D++E ++ + V ES + + A+ L+ E D
Sbjct: 358 NLMRDIKVEIKRETLPSPQDIVEMKRLKIKDEMQEIVENESYDGYREFAEELLAEYTPDV 417
Query: 237 LAAALAQLS 245
AL +L+
Sbjct: 418 ALGALLRLA 426
>gi|403508500|ref|YP_006640138.1| helicase conserved C-terminal domain protein [Nocardiopsis alba
ATCC BAA-2165]
gi|402803335|gb|AFR10745.1| helicase conserved C-terminal domain protein [Nocardiopsis alba
ATCC BAA-2165]
Length = 513
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/170 (46%), Positives = 106/170 (62%), Gaps = 7/170 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDE----KLAEGIKLYAISTTATSKRTILS 56
MLFSATMPS + LSR YL P ++ G+ +E + I +A T K +L+
Sbjct: 174 MLFSATMPSEIVTLSRNYLTRPTHVR-AGDDNEIDGSAITSRIAQHAFRTHQMDKPEMLA 232
Query: 57 DLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKF 115
L+ G+++VF QTKR D V+ L S A+ A+HGD+ Q QRER L FR GK
Sbjct: 233 RLLQA-EDHGQSMVFCQTKRACDRVASDLKSRGFAAAAVHGDLGQSQRERALRAFRNGKI 291
Query: 116 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAI 165
+LVATDVAARGLD+ +V +++YE P D +T+ HR GRTGRAG+ GTA+
Sbjct: 292 NILVATDVAARGLDVDDVTHVVNYETPEDEKTYTHRIGRTGRAGRTGTAV 341
>gi|444426564|ref|ZP_21221977.1| Cold-shock DEAD-box protein A [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444240216|gb|ELU51762.1| Cold-shock DEAD-box protein A [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 639
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 142/254 (55%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K + ++L +P+ +D+ G + ++ K +S L+
Sbjct: 184 VLFSATMPPMLKNIVERFLRDPVTVDVAGKN--HTVDKVQQQFWVVKGVEKDEAMSRLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTD--A 236
ER E + P+ + V E+ ++ A L ++++ F ++L D
Sbjct: 361 ERVTKSSMEEIQLPLRDQVAEARLNKLAAELEAEKEHKALDKFAELVEKLQTSLEIDPAM 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAMLLKRQQGKRP 434
>gi|388598566|ref|ZP_10156962.1| ATP-dependent RNA helicase DeaD [Vibrio campbellii DS40M4]
Length = 641
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 142/254 (55%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K + ++L +P+ +D+ G + ++ K +S L+
Sbjct: 184 VLFSATMPPMLKNIVERFLRDPVTVDVAGKN--HTVDKVQQQFWVVKGVEKDEAMSRLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTD--A 236
ER E + P+ + V E+ ++ A L ++++ F ++L D
Sbjct: 361 ERVTKSSMEEIQLPLRDQVAEARLNKLAAELEAEKEHKALDKFAELVEKLQTSLEIDPAM 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAMLLKRQQGKRP 434
>gi|87310556|ref|ZP_01092685.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
gi|87286777|gb|EAQ78682.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
Length = 447
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 121/183 (66%), Gaps = 6/183 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+ F+ATMP V +L+ L+NP+ I++ + AE ++ + + KR +L +
Sbjct: 178 IFFTATMPPKVAQLASGLLNNPVRIEVA--PESTTAERVEQRLMYVSQGDKRALLEH--S 233
Query: 61 VYAKG-GKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ A+G G+T+VFT+TK AD ++ L S I ++A+HG+ +Q++R R L FR G+ VL
Sbjct: 234 LQAEGVGRTLVFTKTKHGADRLAKELNASGIRTDAIHGNKTQNKRNRALESFRSGRLQVL 293
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARG+D+ V +++++LP DPE++VHR GRTGRAGKEG A+ S+ T+R+
Sbjct: 294 VATDVAARGIDVDGVTHVVNFDLPIDPESYVHRIGRTGRAGKEGIALSFCDFSEHGTLRA 353
Query: 179 LER 181
+ER
Sbjct: 354 IER 356
>gi|305682037|ref|ZP_07404841.1| ATP-dependent RNA helicase DeaD [Corynebacterium matruchotii ATCC
14266]
gi|305658510|gb|EFM48013.1| ATP-dependent RNA helicase DeaD [Corynebacterium matruchotii ATCC
14266]
Length = 721
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 127/201 (63%), Gaps = 4/201 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMPS +++LS++Y+++P I + + + I ++ +K L+ ++ V
Sbjct: 252 LFSATMPSGIRRLSKQYMNDPHEIQV--KSETRTNTNITQRFLNVAHRNKLDALTRILEV 309
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +E++ L + + A++GDI+Q QRERT+ + G+ +LVA
Sbjct: 310 -TEFEAMIMFVRTKFETEELAEKLRARGFNAAAINGDIAQQQRERTVEQLKDGRLDILVA 368
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P+D E++VHR GRTGRAG+ G AIL T +RR +R++E
Sbjct: 369 TDVAARGLDVERISHVLNYDIPSDTESYVHRIGRTGRAGRSGEAILFVTPRERRFLRNIE 428
Query: 181 RDVGCKFEFVSPPVVEDVLES 201
R + + P V++V ES
Sbjct: 429 RATNAPLQEMELPTVDEVNES 449
>gi|253573302|ref|ZP_04850645.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251846830|gb|EES74835.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 518
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/252 (37%), Positives = 141/252 (55%), Gaps = 12/252 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+ ++KL++++L NP ++ ++ Q A I I K L+ L+
Sbjct: 179 MLFSATMPANIQKLAQQFLKNPEHVSVIPKQVS--APLIDQAYIEVHERQKFDALTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL +++ LHGD+SQ+QR+ + FR G VLV
Sbjct: 237 MESPE-LAIVFGRTKRRVDELSEALQKQGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ V +++++LP DPE++VHR GRTGRAGKEG A T + +R +
Sbjct: 296 ATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGVAWSFVTPREMDHLRFI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESS----AEQVVATL-NGVHPESVEFFTPTAQRLIEEKGT 234
ER K P + + +E AE+++ + NG E E Q L +
Sbjct: 356 ERITRHKIARKPLPSIAEAIEGKQRIIAERLIELVENG---ELNENKGIAIQLLEQYDSV 412
Query: 235 DALAAALAQLSG 246
+ LAAA ++G
Sbjct: 413 NLLAAAFKLITG 424
>gi|404444837|ref|ZP_11009988.1| DNA/RNA helicase [Mycobacterium vaccae ATCC 25954]
gi|403653206|gb|EJZ08205.1| DNA/RNA helicase [Mycobacterium vaccae ATCC 25954]
Length = 562
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 121/200 (60%), Gaps = 4/200 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +KK++ KYL +P+ + + + AE I + K L+ L+
Sbjct: 191 LFSATMPPAIKKITAKYLHDPVEVTV--KSKTQTAENITQRYYQVSYPRKMDALTRLLET 248
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+G IVF +TK+ +EV+ L + A+ A++GDI Q RERT++ + G +LVA
Sbjct: 249 -EQGDAMIVFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVRERTISQLKDGTIDILVA 307
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + ++++++P+DPE++VHR GRTGRAG+ GTA+L T +R + ++E
Sbjct: 308 TDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLGAIE 367
Query: 181 RDVGCKFEFVSPPVVEDVLE 200
R K P V+DV E
Sbjct: 368 RVTRQKLVESELPSVDDVNE 387
>gi|384423097|ref|YP_005632456.1| cold-shock DEAD-box protein A [Vibrio cholerae LMA3984-4]
gi|327485805|gb|AEA80211.1| Cold-shock DEAD-box protein A [Vibrio cholerae LMA3984-4]
Length = 644
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 145/254 (57%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP VK++ ++L NP +D+ G+ ++ +A+ + Y + K ++ L+
Sbjct: 184 VLFSATMPPMVKEIVERFLRNPECVDVAGS-NQTVAKVEQQYWV-VKGVEKDEAMARLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTDA-- 236
ER E + P + V ES ++ L S+E F ++L DA
Sbjct: 361 ERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASLEIDATT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAILLKRQQGKRP 434
>gi|262174005|ref|ZP_06041682.1| cold-shock DEAD-box protein A [Vibrio mimicus MB-451]
gi|261891363|gb|EEY37350.1| cold-shock DEAD-box protein A [Vibrio mimicus MB-451]
Length = 643
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 145/254 (57%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP VK++ ++L NP +D+ G+ ++ +A+ + Y + K ++ L+
Sbjct: 184 VLFSATMPPMVKEIVERFLRNPECVDVAGS-NQTVAKVEQQYWV-VKGVEKDEAMARLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTDA-- 236
ER E + P + V ES ++ L S+E F ++L DA
Sbjct: 361 ERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFAELVEKLQASLEIDATT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAILLKRQQGKRP 434
>gi|87121489|ref|ZP_01077378.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
gi|86163332|gb|EAQ64608.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
Length = 617
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 145/256 (56%), Gaps = 13/256 (5%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMPS +++++ ++L+NP + +V + K + +S K L+ ++ +
Sbjct: 187 LFSATMPSVIRQVANRHLNNPKEVKIVTKTATNTSITQKYWQVS--GLHKLDALTRILEM 244
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +TK E++ LT+ A EAL+GDISQ+ RERT+ ++G+ +LVA
Sbjct: 245 SEHDG-MIIFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVERIKRGQIDILVA 303
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDV ARGLDI + +++Y++P D E++VHR GRTGRAG+ G AIL +RR ++++E
Sbjct: 304 TDVVARGLDIDRISHVVNYDIPYDTESYVHRIGRTGRAGRTGNAILFVAHRERRMLQAIE 363
Query: 181 RDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 236
R E + P D+ + +++ TL+ ++FF A+ +E +
Sbjct: 364 RATRQPIERMQLPTASDINTQRVNRFKQRITDTLDNA---DLDFFIELAESYQKEHEAEP 420
Query: 237 L--AAALAQLSGFSRP 250
L AAALA ++ P
Sbjct: 421 LKVAAALAHMAQGKNP 436
>gi|347751920|ref|YP_004859485.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
coagulans 36D1]
gi|347584438|gb|AEP00705.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
Length = 475
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 136/246 (55%), Gaps = 5/246 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP ++K++ ++++NP + + E I+ Y + K +LS L+
Sbjct: 179 MLFSATMPDPIRKIAERFMNNPELVRV--KAKEMTVPSIEQYYVKVQEREKFDVLSRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V + IVF +TKR DE++ AL +E +HGD+SQ +R L F+ GK VLV
Sbjct: 237 VQSPD-LAIVFGRTKRRVDELANALNLRGYLAEGIHGDLSQAKRLSVLRKFKDGKIDVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++P DPE++VHR GRTGRAG+EG A+ T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGREGMAMTFVTPREMGYLKTV 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALA 238
E+ + + PP ++ E + + E +++ + A+ L+ E +
Sbjct: 356 EQTTKKRMLPMRPPTWDEAFEGQQRVTMERIGETIKEGNIDEYMSVAKELLAEYDPAEVT 415
Query: 239 AALAQL 244
AA +L
Sbjct: 416 AAALKL 421
>gi|189467630|ref|ZP_03016415.1| hypothetical protein BACINT_04020 [Bacteroides intestinalis DSM
17393]
gi|189435894|gb|EDV04879.1| DEAD/DEAH box helicase [Bacteroides intestinalis DSM 17393]
Length = 482
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 118/188 (62%), Gaps = 4/188 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+ FSATMP + +L++ L NP +++ + E I K+ +L+ L+
Sbjct: 187 LFFSATMPDSIDRLAKSLLHNPARVEVTPASS--VVEIISQSVYRVEKPQKKELLAQLLL 244
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
A G + +VF++TK AD ++ L+ IA E++HGD SQ+ R+R L+ F++G+ V++
Sbjct: 245 GEA-GHQVLVFSRTKHGADNIARYLSRRGIACESIHGDKSQNARQRALSNFKEGRSNVII 303
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATD+AARG+DI +DL+++++LP+ PET+VHR GRTGRAG EG AI +S + +R +
Sbjct: 304 ATDIAARGIDIKGLDLVLNFDLPDVPETYVHRIGRTGRAGCEGRAIAFCSSEEAPMLREI 363
Query: 180 ERDVGCKF 187
E+ G K
Sbjct: 364 EKLTGIKL 371
>gi|424659059|ref|ZP_18096310.1| cold-shock DEAD box protein A [Vibrio cholerae HE-16]
gi|408053406|gb|EKG88421.1| cold-shock DEAD box protein A [Vibrio cholerae HE-16]
Length = 646
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 145/254 (57%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP VK++ ++L NP +D+ G+ ++ +A+ + Y + K ++ L+
Sbjct: 184 VLFSATMPPMVKEIVERFLRNPECVDVAGS-NQTVAKVEQQYWV-VKGVEKDEAMARLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTDA-- 236
ER E + P + V ES ++ L S+E F ++L DA
Sbjct: 361 ERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASLEIDATT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAILLKRQQGKRP 434
>gi|261212543|ref|ZP_05926828.1| cold-shock DEAD-box protein A [Vibrio sp. RC341]
gi|260838474|gb|EEX65130.1| cold-shock DEAD-box protein A [Vibrio sp. RC341]
Length = 639
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 145/254 (57%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP VK++ ++L NP +D+ G+ ++ +A+ + Y + K ++ L+
Sbjct: 184 VLFSATMPPMVKEIVERFLRNPECVDVAGS-NQTVAKVEQQYWV-VKGVEKDEAMARLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTDA-- 236
ER E + P + V ES ++ L S+E F ++L DA
Sbjct: 361 ERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFAELVEKLQASLEIDATT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAILLKRQQGKRP 434
>gi|148977343|ref|ZP_01813957.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3]
gi|145963456|gb|EDK28720.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3]
Length = 646
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 140/247 (56%), Gaps = 11/247 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQD--EKLAEGIKLYAISTTATSKRTILSDL 58
+LFSATMP VK + +YL NP +D+ G +K+A+ + K +S L
Sbjct: 184 VLFSATMPPMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQNFWV----VKGVEKDEAMSRL 239
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
+ + +IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +
Sbjct: 240 LET-EETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDI 298
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R
Sbjct: 299 LVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLR 358
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA 236
++ER E + P+ + V + ++ A L +++E F L E DA
Sbjct: 359 TIERVTKSTMEEIQLPLRDQVAAARVAKLGAELETEKESKALENFAGLITTLQESLDVDA 418
Query: 237 --LAAAL 241
LAA L
Sbjct: 419 ATLAAML 425
>gi|325280019|ref|YP_004252561.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
splanchnicus DSM 20712]
gi|324311828|gb|ADY32381.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
20712]
Length = 594
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 125/216 (57%), Gaps = 14/216 (6%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDL-VGNQ--DEKLAEGIKLYAISTTATSKRTILSDL 58
LFSATMP V+++++ YL NP I NQ D E ++ A T R I
Sbjct: 182 LFSATMPREVERIAKNYLRNPQEISTGKKNQGADTVTHEYYQVLARDCYETLHRVIDC-- 239
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
A I+FT+TK DA E++ L I +ALHGD+SQ QR+ ++ FR + V
Sbjct: 240 ----APDMYAIIFTRTKMDAREIARKLQKDGIDCDALHGDLSQAQRDDVMDRFRAKRLKV 295
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARGLD+ N+ +I+Y LP D E++ HRSGRTGRAG+EG ++ + S ++ +R
Sbjct: 296 LVATDVAARGLDVDNLTHVINYNLPEDVESYTHRSGRTGRAGREGISVAIINSKEKGKLR 355
Query: 178 SLERDVGCKFEFVSPPVVEDV----LESSAEQVVAT 209
+E + KF++ P E+V L A++++ T
Sbjct: 356 RIENILKKKFQYKEVPGGEEVCRAQLSYYADKILMT 391
>gi|407770302|ref|ZP_11117672.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Thalassospira xiamenensis M-5 = DSM 17429]
gi|407286580|gb|EKF12066.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Thalassospira xiamenensis M-5 = DSM 17429]
Length = 609
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 119/186 (63%), Gaps = 12/186 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDL--VGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
+ FSATMPS + +L+ L +P+ + + V E++ + + Y I KR +L++L
Sbjct: 184 LFFSATMPSQIGQLAGDMLSDPVKVSVTPVATTQERVEQSV--YMIEKN--RKRQLLAEL 239
Query: 59 I--TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKF 115
+ ++ + T+VFT+TKR AD V+ L S I++ A+HG+ SQ+QRER LN F+ G+
Sbjct: 240 LDNPLFKR---TLVFTRTKRGADRVARHLESCKISAAAIHGNKSQNQRERALNAFKDGQI 296
Query: 116 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT 175
VLVATD+AARG+D+ V ++++ELPN PE++VHR GRT R G G+AI +R
Sbjct: 297 GVLVATDIAARGIDVDGVTHVVNFELPNVPESYVHRIGRTARGGASGSAIAFCDEEERGL 356
Query: 176 VRSLER 181
+R +E+
Sbjct: 357 LRDIEK 362
>gi|28900463|ref|NP_800118.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus RIMD
2210633]
gi|260365616|ref|ZP_05778137.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus K5030]
gi|260877415|ref|ZP_05889770.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AN-5034]
gi|260898897|ref|ZP_05907338.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus Peru-466]
gi|260901269|ref|ZP_05909664.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AQ4037]
gi|433659726|ref|YP_007300585.1| Cold-shock DEAD-box protein A [Vibrio parahaemolyticus BB22OP]
gi|28808843|dbj|BAC61951.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus RIMD
2210633]
gi|308089202|gb|EFO38897.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus Peru-466]
gi|308090808|gb|EFO40503.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AN-5034]
gi|308106808|gb|EFO44348.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AQ4037]
gi|308111459|gb|EFO48999.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus K5030]
gi|432511113|gb|AGB11930.1| Cold-shock DEAD-box protein A [Vibrio parahaemolyticus BB22OP]
Length = 643
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 142/254 (55%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K + ++L +P+ +D+ G + ++ K +S L+
Sbjct: 184 VLFSATMPPMLKNIVERFLRDPVTVDVAGKN--HTVDKVQQQFWVVKGVEKDEAMSRLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTD--A 236
ER E + P+ + V E+ ++ A L ++++ F ++L D
Sbjct: 361 ERVTKSSMEEIQLPLRDQVAEARLNKLAAELEAEKEHKALDKFAELVEKLQTSLEIDPAM 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAMLLKRQQGKRP 434
>gi|296139030|ref|YP_003646273.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
gi|296027164|gb|ADG77934.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
DSM 20162]
Length = 602
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 138/237 (58%), Gaps = 19/237 (8%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTI--LSDLI 59
LFSATMP ++K+++KYL +P+ I + K A G + +R + L+ L+
Sbjct: 207 LFSATMPPAIRKIAKKYLHDPVEISV----KAKTATGSNITQRYLQVAHQRKLDALTRLL 262
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
V G I+F +TK +E++ L + A+ A++GDI Q QRERT+ + GK +L
Sbjct: 263 EVEEFDG-MIIFVRTKSATEELAEKLRARGHAAAAINGDIVQAQRERTIGQLKDGKVDIL 321
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLD+ + +++Y++P+D E++VHR GRTGRAG++G A+L T +R +R+
Sbjct: 322 VATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRKGDALLFVTPRERHLLRA 381
Query: 179 LERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEE 231
+E+ + P VEDV +E E + L+ H ++ F +RLIE+
Sbjct: 382 IEKATRQPLTEIGLPSVEDVNAHRVEKFGESITENLSNDH---LQMF----RRLIED 431
>gi|319937469|ref|ZP_08011874.1| helicase [Coprobacillus sp. 29_1]
gi|319807309|gb|EFW03918.1| helicase [Coprobacillus sp. 29_1]
Length = 520
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 164/314 (52%), Gaps = 23/314 (7%)
Query: 1 MLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSATMP+ +KK++ Y+ D+ ++I + K A + Y T T+K L ++
Sbjct: 181 VLFSATMPATIKKIASNYMQDDYMHIQI--KSKTKTASTVSQYYFETRPTNKFETLCRIL 238
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ TI+F +TKR DEV ++ EA+HGD+SQ+QR TL F+ G L
Sbjct: 239 D-SRQMENTIIFCKTKRSVDEVVASMQQKHYDVEAMHGDLSQNQRTNTLKRFKSGHIQYL 297
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARG+D+ N+ +I+YE+P D E ++HR GRTGRA K+G A + T+ ++ + S
Sbjct: 298 VATDVAARGIDVDNISHVINYEMPQDEELYIHRIGRTGRANKKGEAYSLVTNREKNFLMS 357
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESV----EFFTPTAQRLIEEKGT 234
+++ E + P +++ + +++ L V E + + F T + + + T
Sbjct: 358 IQKRTNSHIEKLDVPSNQEIFDQKIKEL---LFDVQEEMLKSHKDVFMDTIKDIPHDMRT 414
Query: 235 DALAAALA----QLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSD 290
D +A L+ Q GF + + +++ ++T S ++ + V+ FL+
Sbjct: 415 DVMATLLSMCYQQRVGFDYQEETSAGSQYDRVFMT-------CGSMDRINVKDVIEFLTK 467
Query: 291 VYPTAADEIGKIHI 304
+ +IG I I
Sbjct: 468 YGKIKSSDIGDITI 481
>gi|167752241|ref|ZP_02424368.1| hypothetical protein ALIPUT_00483 [Alistipes putredinis DSM 17216]
gi|167660482|gb|EDS04612.1| DEAD/DEAH box helicase [Alistipes putredinis DSM 17216]
Length = 650
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 128/416 (30%), Positives = 200/416 (48%), Gaps = 38/416 (9%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI--KLYAISTTATSKRTILSDL 58
+LFSATMP + L+R Y+ P DL+ + + + + ++Y K L+ +
Sbjct: 182 LLFSATMPDRIAALARNYMHEP---DLLKVESQHVTTDLTNQIY-FEVREGDKFDALTRI 237
Query: 59 ITVYAKGGKTIVFTQTKRDADE-VSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
I V + IVF++T+ AD+ V+ L A+E LHGDISQ QRE+ L F++ + +
Sbjct: 238 IDVEPEF-YGIVFSRTRTGADDIVAKLLERGYAAEVLHGDISQAQREKILGKFKKKQVNI 296
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARG+D+ N+ +I+Y LP D +++VHR GRTGRAG +GTAI + S+ R
Sbjct: 297 LVATDVAARGIDVSNLTHVINYSLPQDSDSYVHRIGRTGRAGNQGTAITFISPSEMRKFG 356
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA 236
L+R + + P D++ + ++ L+ V ES T A L+E +
Sbjct: 357 FLKRTIKADIKLEQLPTPADIIATKRNKIKEDLDAIVESESYGECTGMAAELLESYPPEV 416
Query: 237 LAAALAQLS-----GFSRPPSSRSLINHEQGWVTLQLTRDSAF-SRGFMSARSVMGFLSD 290
+AL +L+ S P RS+ +G + L AF +R R + L
Sbjct: 417 ALSALLRLAFKNELSESSYPEIRSIDVDRKGKARIFL----AFGARDGYDTRKTVRLLKQ 472
Query: 291 VYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGP 350
+ +I + ++ D FD E++ + L ++ G I++I+K D P
Sbjct: 473 ECGLSDHDIDDVRVMEDFSFATVPFDQAEKVVRTL--NKLSHGRPIAEISK------DSP 524
Query: 351 SSDNY-GRFSSRDRFS--RGGGSRFSRGGARGGARGGGSM--------DRRGFRSS 395
S+ GR S R R S R G + +R R S+ DR G R S
Sbjct: 525 SARTSGGRQSHRRRESDTRSGRKTGRKPESRESYRQDSSVQEAFGAPDDRNGHRKS 580
>gi|374335166|ref|YP_005091853.1| ATP-dependent RNA helicase [Oceanimonas sp. GK1]
gi|372984853|gb|AEY01103.1| ATP-dependent RNA helicase [Oceanimonas sp. GK1]
Length = 596
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 125/210 (59%), Gaps = 4/210 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++++++KYL +P + + + I+ K+ L L+
Sbjct: 187 LFSATMPPAIQRVAQKYLKDPQEVRIANKT--RTNASIRQRYWFVRGMPKQEALCRLVET 244
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+VF +T++DA+E++ ++ A EALHGDI Q RE+ ++ + G+ VLVA
Sbjct: 245 ENMDA-CLVFVRTRKDAEELAELMSREGHACEALHGDIPQKLREKVVDRLKNGRLNVLVA 303
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDV ARGLD+ + +I+Y++P+D E++VHR GRTGRAG+EG AIL T ++R++ +LE
Sbjct: 304 TDVVARGLDVERISHVINYDMPHDNESYVHRIGRTGRAGREGDAILFVTGREKRSLYNLE 363
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATL 210
R E +S P +D+ + AE+ A +
Sbjct: 364 RHTRQPIEEMSMPSADDINKIRAERFKARI 393
>gi|159903626|ref|YP_001550970.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9211]
gi|159888802|gb|ABX09016.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
MIT 9211]
Length = 604
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 115/354 (32%), Positives = 175/354 (49%), Gaps = 33/354 (9%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+ FSATMPS +++LS++YL P I + + E A+ I+ I + K L ++
Sbjct: 230 IFFSATMPSEIRRLSKQYLHEPAEITIKAQKKE--AQLIRQRYIVIQNSFKLEALKRVLE 287
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTVLV 119
A G I+F +TK +S +L ++ + A L+GD+ Q RERT+ RQG +LV
Sbjct: 288 TTADEG-VIIFARTKAITLRLSESLEALNHNVAVLNGDVPQTLRERTIERLRQGGIDILV 346
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ + L+I+Y++P D E +VHR GRTGRAG+ G AIL + +R + +L
Sbjct: 347 ATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAILFVSPRERSFINNL 406
Query: 180 ERDVGCKFEFVSPPVVEDV-------LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEK 232
ER VG E + P E + L+++ Q V T P E T + LI+E
Sbjct: 407 ERAVGQSIEKMEIPNNEIINQHRINKLKNNLSQAVET-----PRQHEEETEILKCLIKEV 461
Query: 233 G------TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ-LTRDSAFSRGFMSARSVM 285
G T +A A L+ S P I ++ W++ Q ++R + R
Sbjct: 462 GEELEIETKDIAVAALNLAIGSLPLK----IQEDESWLSQQNISRKNYDRRDDRGRSRRK 517
Query: 286 GFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKI 339
+ +P E K+ + DRV+ P I + N+ GN I +I
Sbjct: 518 NSFNSSHPDKDKERYKLDVGHRDRVK------PGNIVGAIANESGLKGNMIGRI 565
>gi|417948598|ref|ZP_12591742.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
gi|342809545|gb|EGU44662.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
Length = 638
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 140/247 (56%), Gaps = 11/247 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQD--EKLAEGIKLYAISTTATSKRTILSDL 58
+LFSATMP VK + +YL NP +D+ G +K+A+ + K +S L
Sbjct: 184 VLFSATMPPMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQNFWV----VKGVEKDEAMSRL 239
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
+ + +IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +
Sbjct: 240 LET-EETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDI 298
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R
Sbjct: 299 LVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLR 358
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA 236
++ER E + P+ + V + ++ A L +++E F L E DA
Sbjct: 359 TIERVTKSTMEEIQLPLRDQVAAARVAKLGAELETEKESKALENFAGLITTLQESLDVDA 418
Query: 237 --LAAAL 241
LAA L
Sbjct: 419 ATLAAML 425
>gi|424043805|ref|ZP_17781428.1| cold-shock DEAD box protein A [Vibrio cholerae HENC-03]
gi|408888334|gb|EKM26795.1| cold-shock DEAD box protein A [Vibrio cholerae HENC-03]
Length = 644
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 141/254 (55%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K + ++L P+ +D+ G + ++ K +S L+
Sbjct: 184 VLFSATMPPMLKNIVERFLREPVTVDVAGKN--HTVDKVQQQFWVVKGVEKDEAMSRLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIE--EKGTDA 236
ER E + P+ + V E+ ++ A L +S++ F ++L E
Sbjct: 361 ERVTKSSMEEIQLPLRDQVAEARLSKLAAELEAEKEHKSLDKFAELVEKLQTSLEINPAM 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAMLLKRQQGKRP 434
>gi|390456495|ref|ZP_10242023.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus peoriae
KCTC 3763]
Length = 526
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 142/253 (56%), Gaps = 8/253 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP +K+L+ ++L +P ++ ++ Q A I+ I K LS LI
Sbjct: 179 MLFSATMPPNIKRLAEQFLKDPEHVSVIPKQVS--APLIEQAYIEVPERQKFEALSRLID 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL +++ LHGD+SQ+QR+ + FR G VLV
Sbjct: 237 MESPE-LAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ V +++++LP DPE++VHR GRTGRAGKEG A T + + +
Sbjct: 296 ATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHFI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVA--TLNGVHPESVEFFTPTAQRLIEE-KGTDA 236
ER + P + + LE ++++A L V + + A +++E+
Sbjct: 356 ERVTRHRIPRKPLPTLAEALEGK-QRIIAERLLEAVEKGELNEYKGLAIQMLEQYDSVQL 414
Query: 237 LAAALAQLSGFSR 249
L+AAL ++G R
Sbjct: 415 LSAALKLMTGEKR 427
>gi|375308018|ref|ZP_09773305.1| dead/deah box helicase domain-containing protein [Paenibacillus sp.
Aloe-11]
gi|375080349|gb|EHS58570.1| dead/deah box helicase domain-containing protein [Paenibacillus sp.
Aloe-11]
Length = 526
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 142/253 (56%), Gaps = 8/253 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP +K+L+ ++L +P ++ ++ Q A I+ I K LS LI
Sbjct: 179 MLFSATMPPNIKRLAEQFLKDPEHVSVIPKQVS--APLIEQAYIEVPERQKFEALSRLID 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL +++ LHGD+SQ+QR+ + FR G VLV
Sbjct: 237 MESPE-LAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ V +++++LP DPE++VHR GRTGRAGKEG A T + + +
Sbjct: 296 ATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHFI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVA--TLNGVHPESVEFFTPTAQRLIEE-KGTDA 236
ER + P + + LE ++++A L V + + A +++E+
Sbjct: 356 ERVTRHRIPRKPLPTLAEALEGK-QRIIAERLLEAVEKGELNEYKGLAIQMLEQYDSVQL 414
Query: 237 LAAALAQLSGFSR 249
L+AAL ++G R
Sbjct: 415 LSAALKLMTGEKR 427
>gi|254284072|ref|ZP_04959040.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
gi|219680275|gb|EED36624.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
Length = 598
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 126/211 (59%), Gaps = 4/211 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++++++ +L +P I + + I+ K L+ ++
Sbjct: 187 LFSATMPDAIRRIAKTHLQSPQEITI--KRKTVTNASIRQRVWIMAGVQKLDALTRILET 244
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +T+ E++ L + A+ AL+GDI+Q+QRE+T++ F++G+ +LVA
Sbjct: 245 EDYDG-VIIFVRTRIATQELADKLAARGFATAALNGDIAQNQREKTVDSFKRGQLDLLVA 303
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ V +I+Y++PNDPE ++HR GRTGRAG+ G AIL +RR + ++E
Sbjct: 304 TDVAARGLDVDRVSHVINYDIPNDPEAYIHRIGRTGRAGRTGEAILFAAKRERRLLHAIE 363
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLN 211
R G K + ++ P E V++ A + A +
Sbjct: 364 RTTGQKIDQMTLPSAEQVVDKRAARFKARIT 394
>gi|149189555|ref|ZP_01867838.1| ATP-dependent RNA helicase DeaD [Vibrio shilonii AK1]
gi|148836534|gb|EDL53488.1| ATP-dependent RNA helicase DeaD [Vibrio shilonii AK1]
Length = 634
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 143/254 (56%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +KK+ ++L P +D+ G + ++ K ++ L+
Sbjct: 184 VLFSATMPPMLKKIVDRFLREPEYVDVAGKN--HTVDKVEQQFWVVKGVEKDEAMARLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA-- 236
ER E + P+ + V E+ ++ A L +S++ F ++L E DA
Sbjct: 361 ERVTKSSMEEIQLPLRDKVAEARLVKLGAELEQEKEHKSLDKFAELVEKLQESLEIDAAT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAILLKRQQGKRP 434
>gi|326335491|ref|ZP_08201678.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga sp.
oral taxon 338 str. F0234]
gi|325692257|gb|EGD34209.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga sp.
oral taxon 338 str. F0234]
Length = 572
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 136/233 (58%), Gaps = 26/233 (11%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEK---------LAEGIKLY-AISTTATSK 51
LFSATMP+ V K++++++ +P I +G++++ + G + Y A+ A +
Sbjct: 182 LFSATMPTEVAKIAKEFMHHPKEIT-IGHKNQASDNVLHECYIVNGRQRYEALKRLADAN 240
Query: 52 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGF 110
+I S +VF +TKRD V+ L + ALHGD+SQ+QR+ + GF
Sbjct: 241 PSIFS------------VVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKGF 288
Query: 111 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 170
R + +LVATDVAARG+D+ ++ +IHY+LP++ ET+ HRSGRTGRAGK G ++++ T
Sbjct: 289 RAKQIQMLVATDVAARGIDVDDITHVIHYQLPDEIETYTHRSGRTGRAGKSGVSMVILTK 348
Query: 171 SQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG--VHPESVEFF 221
S+ + ++++ER + FE+ + P ++ E + T+ V+P E+
Sbjct: 349 SETKRIKTIERIIQKTFEYKTIPSGMEICEIQLYHLANTIKDTQVNPAVNEYL 401
>gi|15601559|ref|NP_233190.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121588090|ref|ZP_01677839.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 2740-80]
gi|121730005|ref|ZP_01682420.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V52]
gi|153819412|ref|ZP_01972079.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae NCTC 8457]
gi|153823796|ref|ZP_01976463.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae B33]
gi|227812370|ref|YP_002812380.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae M66-2]
gi|254849961|ref|ZP_05239311.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MO10]
gi|298499594|ref|ZP_07009400.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MAK 757]
gi|9658230|gb|AAF96702.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121547686|gb|EAX57782.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 2740-80]
gi|121628252|gb|EAX60768.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V52]
gi|126510058|gb|EAZ72652.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae NCTC 8457]
gi|126518684|gb|EAZ75907.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae B33]
gi|227011512|gb|ACP07723.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae M66-2]
gi|254845666|gb|EET24080.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MO10]
gi|297541575|gb|EFH77626.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MAK 757]
Length = 663
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 145/254 (57%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP VK++ ++L NP +D+ G+ ++ +A+ + Y + K ++ L+
Sbjct: 204 VLFSATMPPMVKEIVERFLRNPECVDVAGS-NQTVAKVEQQYWV-VKGVEKDEAMARLLE 261
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LV
Sbjct: 262 T-EETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 320
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 321 ATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 380
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTDA-- 236
ER E + P + V ES ++ L S+E F ++L DA
Sbjct: 381 ERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASLEIDATT 440
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 441 LAAILLKRQQGKRP 454
>gi|315443280|ref|YP_004076159.1| DNA/RNA helicase [Mycobacterium gilvum Spyr1]
gi|315261583|gb|ADT98324.1| DNA/RNA helicase, superfamily II [Mycobacterium gilvum Spyr1]
Length = 561
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 120/200 (60%), Gaps = 4/200 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +KK++ KYL +P+ + + + AE I + K L+ L+
Sbjct: 191 LFSATMPPAIKKITAKYLHDPVEVTV--KSKTQTAENITQRYFLVSYPRKMDALTRLLET 248
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+G IVF +TK+ +EV+ L + A+ A++GDI Q RERT+ + G +LVA
Sbjct: 249 -EQGDAMIVFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTITQLKDGTIDILVA 307
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + ++++++P+DPE++VHR GRTGRAG+ GTA+L T +R + ++E
Sbjct: 308 TDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLGAIE 367
Query: 181 RDVGCKFEFVSPPVVEDVLE 200
R K P V+DV E
Sbjct: 368 RVTRQKLVESELPSVDDVNE 387
>gi|392988049|ref|YP_006486642.1| DEAD/DEAH box helicase [Enterococcus hirae ATCC 9790]
gi|392335469|gb|AFM69751.1| DEAD-box ATP dependent DNA helicase [Enterococcus hirae ATCC 9790]
Length = 503
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/259 (35%), Positives = 140/259 (54%), Gaps = 17/259 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K + K++ +P ++ + E A+ I Y + K I++ L
Sbjct: 178 LLFSATMPPAIKNIGVKFMKSPTHVKIKAK--EMTADLIDQYYVRAKEYEKFDIMTRLFD 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V TIVF +TKR DE++ L + +E +HGD+SQ +R L F+ G +LV
Sbjct: 236 VQTPE-LTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKNGHLDILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++P DPE++VHR GRTGRAGK G ++ T ++ + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMSYLHVI 354
Query: 180 ERDVGCKFEFVSPPVVEDV----LESSAEQVVATL--NGVHPESVEFFTPTAQRLIEEKG 233
E + + PP ++ L ++ EQ+ A L NG ++ + TA +L+EE
Sbjct: 355 ENLTKKRMATLRPPTEKEAFKGQLGAAVEQIEAKLEENG-----LDKYLQTADKLLEEYS 409
Query: 234 TDALAAALAQLSGFSRPPS 252
L A L L ++ PS
Sbjct: 410 AQDLVALL--LKTTAKDPS 426
>gi|262201927|ref|YP_003273135.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
gi|262085274|gb|ACY21242.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
43247]
Length = 597
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 121/198 (61%), Gaps = 4/198 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMPS +++L+++YL++P I + A+ I + + K L+ + V
Sbjct: 201 LFSATMPSAIRRLAQRYLNDPQEITV--KSKTATAQNITQRYLQVSHQRKLDALTRFLEV 258
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
IVF +TK+ +E++ L S ++ A++GD++Q QRERT+N + G +LVA
Sbjct: 259 ETFDA-MIVFVRTKQATEELAEKLRSRGFSAVAINGDMAQAQRERTINQLKSGGIDILVA 317
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P+D E++VHR GRTGRAG+ G A+L + +R +RS+E
Sbjct: 318 TDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGNALLFVSPRERHLLRSIE 377
Query: 181 RDVGCKFEFVSPPVVEDV 198
R + P VEDV
Sbjct: 378 RATRSTLTEIGLPSVEDV 395
>gi|323691087|ref|ZP_08105368.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
symbiosum WAL-14673]
gi|323504856|gb|EGB20637.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
symbiosum WAL-14673]
Length = 552
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 142/251 (56%), Gaps = 11/251 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMP + ++++K+ +P + +V + E + Y +K ++ L+
Sbjct: 182 VMFSATMPPAIAEIAKKFQKDPEIVKVV--KKELTVPKVTQYYYEVKPKTKVEVMCRLLD 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+Y +IVF TKR D++ L +E LHGD+ Q QR+R +N FR G+ +L+
Sbjct: 240 MY-DPKLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDILI 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ +V+ + +Y++P D E +VHR GRTGRAG+EG A + + +R +
Sbjct: 299 ATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVVGREVYKLREI 358
Query: 180 ERDVGCKFEFVSPPV--VEDVLESSAEQVVATLNGVHPES--VEFFTPTAQRLIEEKGTD 235
+R CK + + P+ + DV E+++ ++ + +S + +R++EE T
Sbjct: 359 QR--YCKTKIIPQPIPSLNDVTSIKVEKIMDSVEEIIRDSDLDKIINIVEKRVLEEDYTT 416
Query: 236 A-LAAALAQLS 245
LAAAL ++S
Sbjct: 417 LDLAAALLKMS 427
>gi|260558407|ref|ZP_05830603.1| helicase [Enterococcus faecium C68]
gi|261207113|ref|ZP_05921802.1| helicase [Enterococcus faecium TC 6]
gi|289567232|ref|ZP_06447617.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
gi|293556891|ref|ZP_06675452.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
gi|293567807|ref|ZP_06679148.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
gi|294615128|ref|ZP_06695014.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
gi|294617803|ref|ZP_06697416.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
gi|406579294|ref|ZP_11054526.1| DEAD/DEAH box helicase [Enterococcus sp. GMD4E]
gi|406581588|ref|ZP_11056725.1| DEAD/DEAH box helicase [Enterococcus sp. GMD3E]
gi|406584027|ref|ZP_11059065.1| DEAD/DEAH box helicase [Enterococcus sp. GMD2E]
gi|406589825|ref|ZP_11064245.1| DEAD/DEAH box helicase [Enterococcus sp. GMD1E]
gi|410938072|ref|ZP_11369930.1| DEAD/DEAH box helicase [Enterococcus sp. GMD5E]
gi|424789110|ref|ZP_18215819.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
V689]
gi|424953765|ref|ZP_18368708.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R494]
gi|424962400|ref|ZP_18376756.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1986]
gi|424963599|ref|ZP_18377803.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1190]
gi|424970725|ref|ZP_18384213.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1139]
gi|424978089|ref|ZP_18391038.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1123]
gi|425038208|ref|ZP_18442830.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 513]
gi|425058609|ref|ZP_18461987.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 504]
gi|425060636|ref|ZP_18463922.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 503]
gi|427397059|ref|ZP_18889685.1| hypothetical protein HMPREF9307_01861 [Enterococcus durans
FB129-CNAB-4]
gi|430820898|ref|ZP_19439518.1| DEAD/DEAH box helicase [Enterococcus faecium E0045]
gi|430823396|ref|ZP_19441967.1| DEAD/DEAH box helicase [Enterococcus faecium E0120]
gi|430826317|ref|ZP_19444503.1| DEAD/DEAH box helicase [Enterococcus faecium E0164]
gi|430828899|ref|ZP_19447010.1| DEAD/DEAH box helicase [Enterococcus faecium E0269]
gi|430834757|ref|ZP_19452759.1| DEAD/DEAH box helicase [Enterococcus faecium E0679]
gi|430836494|ref|ZP_19454473.1| DEAD/DEAH box helicase [Enterococcus faecium E0680]
gi|430839412|ref|ZP_19457353.1| DEAD/DEAH box helicase [Enterococcus faecium E0688]
gi|430843175|ref|ZP_19461076.1| DEAD/DEAH box helicase [Enterococcus faecium E1050]
gi|430850821|ref|ZP_19468578.1| DEAD/DEAH box helicase [Enterococcus faecium E1185]
gi|430853175|ref|ZP_19470905.1| DEAD/DEAH box helicase [Enterococcus faecium E1258]
gi|430858894|ref|ZP_19476513.1| DEAD/DEAH box helicase [Enterococcus faecium E1552]
gi|430861435|ref|ZP_19478942.1| DEAD/DEAH box helicase [Enterococcus faecium E1573]
gi|430866428|ref|ZP_19481705.1| DEAD/DEAH box helicase [Enterococcus faecium E1574]
gi|430892938|ref|ZP_19484559.1| DEAD/DEAH box helicase [Enterococcus faecium E1575]
gi|430952632|ref|ZP_19486438.1| DEAD/DEAH box helicase [Enterococcus faecium E1576]
gi|431000766|ref|ZP_19488247.1| DEAD/DEAH box helicase [Enterococcus faecium E1578]
gi|431234137|ref|ZP_19502906.1| DEAD/DEAH box helicase [Enterococcus faecium E1622]
gi|431256501|ref|ZP_19504856.1| DEAD/DEAH box helicase [Enterococcus faecium E1623]
gi|431303424|ref|ZP_19508271.1| DEAD/DEAH box helicase [Enterococcus faecium E1626]
gi|431380394|ref|ZP_19510775.1| DEAD/DEAH box helicase [Enterococcus faecium E1627]
gi|431441111|ref|ZP_19513326.1| DEAD/DEAH box helicase [Enterococcus faecium E1630]
gi|431506774|ref|ZP_19515600.1| DEAD/DEAH box helicase [Enterococcus faecium E1634]
gi|431725207|ref|ZP_19525416.1| DEAD/DEAH box helicase [Enterococcus faecium E1904]
gi|431744090|ref|ZP_19532962.1| DEAD/DEAH box helicase [Enterococcus faecium E2071]
gi|431747114|ref|ZP_19535916.1| DEAD/DEAH box helicase [Enterococcus faecium E2134]
gi|431760196|ref|ZP_19548798.1| DEAD/DEAH box helicase [Enterococcus faecium E3346]
gi|431765027|ref|ZP_19553551.1| DEAD/DEAH box helicase [Enterococcus faecium E4215]
gi|260075581|gb|EEW63887.1| helicase [Enterococcus faecium C68]
gi|260078741|gb|EEW66443.1| helicase [Enterococcus faecium TC 6]
gi|289160980|gb|EFD08895.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
gi|291589392|gb|EFF21199.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
gi|291592070|gb|EFF23693.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
gi|291595943|gb|EFF27223.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
gi|291600975|gb|EFF31266.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
gi|402922578|gb|EJX42943.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
V689]
gi|402938304|gb|EJX57320.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R494]
gi|402940682|gb|EJX59477.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1986]
gi|402948694|gb|EJX66809.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1190]
gi|402960765|gb|EJX77866.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1139]
gi|402963120|gb|EJX80012.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1123]
gi|403019904|gb|EJY32478.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 513]
gi|403038013|gb|EJY49253.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 504]
gi|403042418|gb|EJY53373.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 503]
gi|404455599|gb|EKA02443.1| DEAD/DEAH box helicase [Enterococcus sp. GMD4E]
gi|404459354|gb|EKA05720.1| DEAD/DEAH box helicase [Enterococcus sp. GMD3E]
gi|404464924|gb|EKA10437.1| DEAD/DEAH box helicase [Enterococcus sp. GMD2E]
gi|404470265|gb|EKA14916.1| DEAD/DEAH box helicase [Enterococcus sp. GMD1E]
gi|410733711|gb|EKQ75634.1| DEAD/DEAH box helicase [Enterococcus sp. GMD5E]
gi|425722385|gb|EKU85280.1| hypothetical protein HMPREF9307_01861 [Enterococcus durans
FB129-CNAB-4]
gi|430439035|gb|ELA49418.1| DEAD/DEAH box helicase [Enterococcus faecium E0045]
gi|430442109|gb|ELA52157.1| DEAD/DEAH box helicase [Enterococcus faecium E0120]
gi|430445197|gb|ELA54971.1| DEAD/DEAH box helicase [Enterococcus faecium E0164]
gi|430482561|gb|ELA59676.1| DEAD/DEAH box helicase [Enterococcus faecium E0269]
gi|430484826|gb|ELA61773.1| DEAD/DEAH box helicase [Enterococcus faecium E0679]
gi|430488294|gb|ELA64976.1| DEAD/DEAH box helicase [Enterococcus faecium E0680]
gi|430490870|gb|ELA67366.1| DEAD/DEAH box helicase [Enterococcus faecium E0688]
gi|430497924|gb|ELA73941.1| DEAD/DEAH box helicase [Enterococcus faecium E1050]
gi|430535180|gb|ELA75603.1| DEAD/DEAH box helicase [Enterococcus faecium E1185]
gi|430540997|gb|ELA81174.1| DEAD/DEAH box helicase [Enterococcus faecium E1258]
gi|430544740|gb|ELA84762.1| DEAD/DEAH box helicase [Enterococcus faecium E1552]
gi|430549900|gb|ELA89710.1| DEAD/DEAH box helicase [Enterococcus faecium E1573]
gi|430551656|gb|ELA91407.1| DEAD/DEAH box helicase [Enterococcus faecium E1574]
gi|430555404|gb|ELA94942.1| DEAD/DEAH box helicase [Enterococcus faecium E1575]
gi|430557231|gb|ELA96699.1| DEAD/DEAH box helicase [Enterococcus faecium E1576]
gi|430562425|gb|ELB01657.1| DEAD/DEAH box helicase [Enterococcus faecium E1578]
gi|430573163|gb|ELB11993.1| DEAD/DEAH box helicase [Enterococcus faecium E1622]
gi|430577603|gb|ELB16190.1| DEAD/DEAH box helicase [Enterococcus faecium E1623]
gi|430580065|gb|ELB18545.1| DEAD/DEAH box helicase [Enterococcus faecium E1626]
gi|430582262|gb|ELB20689.1| DEAD/DEAH box helicase [Enterococcus faecium E1627]
gi|430586467|gb|ELB24719.1| DEAD/DEAH box helicase [Enterococcus faecium E1630]
gi|430587161|gb|ELB25394.1| DEAD/DEAH box helicase [Enterococcus faecium E1634]
gi|430595854|gb|ELB33732.1| DEAD/DEAH box helicase [Enterococcus faecium E1904]
gi|430605718|gb|ELB43100.1| DEAD/DEAH box helicase [Enterococcus faecium E2071]
gi|430607222|gb|ELB44549.1| DEAD/DEAH box helicase [Enterococcus faecium E2134]
gi|430624005|gb|ELB60656.1| DEAD/DEAH box helicase [Enterococcus faecium E3346]
gi|430629510|gb|ELB65910.1| DEAD/DEAH box helicase [Enterococcus faecium E4215]
Length = 503
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 135/250 (54%), Gaps = 15/250 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K + K++ NP ++ + E A+ I Y + K I++ L
Sbjct: 178 LLFSATMPPAIKNIGVKFMKNPHHVKIKAK--EMTADLIDQYYVRAKEYEKFDIMTRLFD 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V TIVF +TKR DE++ L + +E +HGD+SQ +R L F+ G +LV
Sbjct: 236 VQTPE-LTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++P DPE++VHR GRTGRAGK G ++ T ++ + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354
Query: 180 ERDVGCKFEFVSPPVVEDV----LESSAEQVVATL--NGVHPESVEFFTPTAQRLIEEKG 233
E + + PP ++ L ++ EQ+ L NG ++ + TA +L+EE
Sbjct: 355 ENLTKKRMTTLRPPTEKEAFKGQLGAAVEQIETKLAENG-----LDKYLQTADKLLEEYS 409
Query: 234 TDALAAALAQ 243
L A L +
Sbjct: 410 AQDLVALLLK 419
>gi|254229364|ref|ZP_04922780.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
gi|151938055|gb|EDN56897.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
Length = 577
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 142/254 (55%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +KK+ ++L P+ +D+ G + ++ K +S L+
Sbjct: 117 VLFSATMPPMLKKIVERFLREPVMVDVAGKN--HTVDKVQQQFWVVKGVEKDEAMSRLLE 174
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +LV
Sbjct: 175 T-EETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 233
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 234 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 293
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTD--A 236
ER E + P+ + V E+ ++ A L ++++ F ++L D
Sbjct: 294 ERVTKSSMEEIQLPLRDQVAEARLAKLGAELEAEKEHKALDKFAELVEKLQTSLDIDPAT 353
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 354 LAAMLLKRQQGKRP 367
>gi|447911698|ref|YP_007393110.1| Cold-shock DEAD-box protein A [Enterococcus faecium NRRL B-2354]
gi|445187407|gb|AGE29049.1| Cold-shock DEAD-box protein A [Enterococcus faecium NRRL B-2354]
Length = 503
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 135/250 (54%), Gaps = 15/250 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K + K++ NP ++ + E A+ I Y + K I++ L
Sbjct: 178 LLFSATMPPAIKNIGVKFMKNPHHVKIKAK--EMTADLIDQYYVRAKEYEKFDIMTRLFD 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V TIVF +TKR DE++ L + +E +HGD+SQ +R L F+ G +LV
Sbjct: 236 VQTPE-LTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++P DPE++VHR GRTGRAGK G ++ T ++ + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354
Query: 180 ERDVGCKFEFVSPPVVEDV----LESSAEQVVATL--NGVHPESVEFFTPTAQRLIEEKG 233
E + + PP ++ L ++ EQ+ L NG ++ + TA +L+EE
Sbjct: 355 ENLTKKRMTTLRPPTEKEAFKGQLGAAVEQIETKLAENG-----LDKYLQTADKLLEEYS 409
Query: 234 TDALAAALAQ 243
L A L +
Sbjct: 410 AQDLVALLLK 419
>gi|431208676|ref|ZP_19500889.1| DEAD/DEAH box helicase [Enterococcus faecium E1620]
gi|430570682|gb|ELB09622.1| DEAD/DEAH box helicase [Enterococcus faecium E1620]
Length = 503
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 135/250 (54%), Gaps = 15/250 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K + K++ NP ++ + E A+ I Y + K I++ L
Sbjct: 178 LLFSATMPPAIKNIGVKFMKNPHHVKIKAK--EMTADLIDQYYVRAKEYEKFDIMTRLFD 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V TIVF +TKR DE++ L + +E +HGD+SQ +R L F+ G +LV
Sbjct: 236 VQTPE-LTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++P DPE++VHR GRTGRAGK G ++ T ++ + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354
Query: 180 ERDVGCKFEFVSPPVVEDV----LESSAEQVVATL--NGVHPESVEFFTPTAQRLIEEKG 233
E + + PP ++ L ++ EQ+ L NG ++ + TA +L+EE
Sbjct: 355 ENLTKKRMTTLRPPTEKEAFKGQLGAAVEQIETKLAENG-----LDKYLQTADKLLEEYS 409
Query: 234 TDALAAALAQ 243
L A L +
Sbjct: 410 AQDLVALLLK 419
>gi|434399810|ref|YP_007133814.1| DEAD/DEAH box helicase domain protein [Stanieria cyanosphaera PCC
7437]
gi|428270907|gb|AFZ36848.1| DEAD/DEAH box helicase domain protein [Stanieria cyanosphaera PCC
7437]
Length = 485
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 136/247 (55%), Gaps = 10/247 (4%)
Query: 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY 62
FSATMP +K L +++L +P+ + + + + Y + K L ++ +
Sbjct: 182 FSATMPREIKDLIQQFLKSPIMVTVEQPKAAPARINQQAYMVPR-GWHKNQALQPILEI- 239
Query: 63 AKGGKTIVFTQTKRDADEVSLALTSIIAS-EALHGDISQHQRERTLNGFRQGKFTVLVAT 121
+ I+F +TK+ A E++ L S + HGD+SQ QRER + FR GK ++VAT
Sbjct: 240 EEIDSAIIFVRTKKTASELTSKLQEAGHSVDEYHGDLSQIQRERLVQRFRDGKIKMIVAT 299
Query: 122 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 181
D+AARGLD+ N+ +I+Y+LP++ ET++HR GRTGRAGK GTAI + RRT+R +E
Sbjct: 300 DIAARGLDVENLTHVINYDLPDNAETYIHRIGRTGRAGKHGTAIALVQPIDRRTLRQIEH 359
Query: 182 DVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDAL 237
+ + E P +V L QV TL+G E + F P + L +E A+
Sbjct: 360 RLRQRLEINKIPSRTEVEAKRLAKLQAQVQETLSG---ERMASFLPLVRELSDEYDPQAI 416
Query: 238 AAALAQL 244
AAA Q+
Sbjct: 417 AAAALQM 423
>gi|261408394|ref|YP_003244635.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|329929405|ref|ZP_08283153.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
gi|261284857|gb|ACX66828.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
gi|328936492|gb|EGG32937.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
Length = 533
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 137/251 (54%), Gaps = 10/251 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ ++KL+ ++L P ++ ++ A I I K LS L+
Sbjct: 179 LLFSATMPANIQKLASQFLKEPEHVSVIPKHVS--APLIDQAYIEVPERQKFEALSRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL +++ LHGD+SQHQR+ + FR G VLV
Sbjct: 237 MESPE-LAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ V +++++LP DPE++VHR GRTGRAGKEGTA T + + +
Sbjct: 296 ATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLYFI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235
ER + P + + +E AE+V+ + E E+ Q L +
Sbjct: 356 ERVTRHRIPRKPLPTIAEAIEGKQRIIAERVLEIIE--QGELTEYKGLAIQLLEQYDSVQ 413
Query: 236 ALAAALAQLSG 246
LAAA+ L+G
Sbjct: 414 LLAAAMKILTG 424
>gi|323483414|ref|ZP_08088802.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum
WAL-14163]
gi|355627088|ref|ZP_09049059.1| hypothetical protein HMPREF1020_03138 [Clostridium sp. 7_3_54FAA]
gi|323403268|gb|EGA95578.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum
WAL-14163]
gi|354820528|gb|EHF04943.1| hypothetical protein HMPREF1020_03138 [Clostridium sp. 7_3_54FAA]
Length = 552
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 142/251 (56%), Gaps = 11/251 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMP + ++++K+ +P + +V + E + Y +K ++ L+
Sbjct: 182 VMFSATMPPAIAEIAKKFQKDPEIVKVV--KKELTVPKVTQYYYEVKPKTKVEVMCRLLD 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+Y +IVF TKR D++ L +E LHGD+ Q QR+R +N FR G+ +L+
Sbjct: 240 MY-DPKLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDILI 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ +V+ + +Y++P D E +VHR GRTGRAG+EG A + + +R +
Sbjct: 299 ATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVVGREVYKLREI 358
Query: 180 ERDVGCKFEFVSPPV--VEDVLESSAEQVVATLNGVHPES--VEFFTPTAQRLIEEKGTD 235
+R CK + + P+ + DV E+++ ++ + +S + +R++EE T
Sbjct: 359 QR--YCKTKIIPQPIPSLNDVTSIKVEKIMDSVEEIIRDSDLDKIINIVEKRVLEEDYTT 416
Query: 236 A-LAAALAQLS 245
LAAAL ++S
Sbjct: 417 LDLAAALLKMS 427
>gi|69248308|ref|ZP_00604710.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Enterococcus faecium DO]
gi|257878842|ref|ZP_05658495.1| helicase [Enterococcus faecium 1,230,933]
gi|257881478|ref|ZP_05661131.1| helicase [Enterococcus faecium 1,231,502]
gi|257890700|ref|ZP_05670353.1| helicase [Enterococcus faecium 1,231,410]
gi|293560261|ref|ZP_06676758.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
gi|294621795|ref|ZP_06700954.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
gi|314938932|ref|ZP_07846197.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
gi|314943517|ref|ZP_07850284.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
gi|314948188|ref|ZP_07851582.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
gi|314951548|ref|ZP_07854594.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
gi|314991589|ref|ZP_07857065.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
gi|314994922|ref|ZP_07860049.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
gi|383327538|ref|YP_005353422.1| DEAD/DEAH box helicase [Enterococcus faecium Aus0004]
gi|389867363|ref|YP_006374786.1| DEAD/DEAH box helicase [Enterococcus faecium DO]
gi|415892439|ref|ZP_11549927.1| cold-shock deAd box protein a [Enterococcus faecium E4453]
gi|416131873|ref|ZP_11597781.1| cold-shock deAd box protein a [Enterococcus faecium E4452]
gi|424795449|ref|ZP_18221304.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
S447]
gi|424819380|ref|ZP_18244487.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R501]
gi|424856321|ref|ZP_18280560.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R499]
gi|424949231|ref|ZP_18364921.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R496]
gi|424956289|ref|ZP_18371077.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R446]
gi|424967919|ref|ZP_18381589.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1140]
gi|424976047|ref|ZP_18389165.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1137]
gi|424981969|ref|ZP_18394659.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV99]
gi|424984734|ref|ZP_18397253.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV69]
gi|424987723|ref|ZP_18400084.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV38]
gi|424990961|ref|ZP_18403147.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV26]
gi|424995504|ref|ZP_18407380.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV168]
gi|424997413|ref|ZP_18409175.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV165]
gi|425000503|ref|ZP_18412062.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV161]
gi|425003235|ref|ZP_18414612.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV102]
gi|425006604|ref|ZP_18417774.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV1]
gi|425011167|ref|ZP_18422079.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E422]
gi|425013771|ref|ZP_18424487.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E417]
gi|425017560|ref|ZP_18428061.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C621]
gi|425022464|ref|ZP_18432645.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C497]
gi|425030171|ref|ZP_18435374.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C1904]
gi|425033448|ref|ZP_18438416.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 515]
gi|425034930|ref|ZP_18439786.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 514]
gi|425040930|ref|ZP_18445364.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 511]
gi|425044373|ref|ZP_18448536.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 510]
gi|425047569|ref|ZP_18451517.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 509]
gi|425053412|ref|ZP_18456957.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 506]
gi|430831942|ref|ZP_19449990.1| DEAD/DEAH box helicase [Enterococcus faecium E0333]
gi|430847435|ref|ZP_19465272.1| DEAD/DEAH box helicase [Enterococcus faecium E1133]
gi|430855628|ref|ZP_19473336.1| DEAD/DEAH box helicase [Enterococcus faecium E1392]
gi|431544298|ref|ZP_19518594.1| DEAD/DEAH box helicase [Enterococcus faecium E1731]
gi|431749300|ref|ZP_19538042.1| DEAD/DEAH box helicase [Enterococcus faecium E2297]
gi|431755816|ref|ZP_19544461.1| DEAD/DEAH box helicase [Enterococcus faecium E2883]
gi|431767952|ref|ZP_19556395.1| DEAD/DEAH box helicase [Enterococcus faecium E1321]
gi|431769544|ref|ZP_19557952.1| DEAD/DEAH box helicase [Enterococcus faecium E1644]
gi|431773402|ref|ZP_19561727.1| DEAD/DEAH box helicase [Enterococcus faecium E2369]
gi|431776500|ref|ZP_19564761.1| DEAD/DEAH box helicase [Enterococcus faecium E2560]
gi|431779582|ref|ZP_19567775.1| DEAD/DEAH box helicase [Enterococcus faecium E4389]
gi|431782613|ref|ZP_19570746.1| DEAD/DEAH box helicase [Enterococcus faecium E6012]
gi|431784440|ref|ZP_19572479.1| DEAD/DEAH box helicase [Enterococcus faecium E6045]
gi|68194452|gb|EAN08953.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Enterococcus faecium DO]
gi|257813070|gb|EEV41828.1| helicase [Enterococcus faecium 1,230,933]
gi|257817136|gb|EEV44464.1| helicase [Enterococcus faecium 1,231,502]
gi|257827060|gb|EEV53686.1| helicase [Enterococcus faecium 1,231,410]
gi|291598627|gb|EFF29685.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
gi|291605711|gb|EFF35148.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
gi|313590904|gb|EFR69749.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
gi|313593873|gb|EFR72718.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
gi|313596242|gb|EFR75087.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
gi|313597889|gb|EFR76734.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
gi|313641641|gb|EFS06221.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
gi|313645321|gb|EFS09901.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
gi|364093335|gb|EHM35615.1| cold-shock deAd box protein a [Enterococcus faecium E4453]
gi|364093511|gb|EHM35776.1| cold-shock deAd box protein a [Enterococcus faecium E4452]
gi|378937232|gb|AFC62304.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecium Aus0004]
gi|388532612|gb|AFK57804.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium DO]
gi|402924387|gb|EJX44599.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
S447]
gi|402926241|gb|EJX46293.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R501]
gi|402930201|gb|EJX49880.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R499]
gi|402934931|gb|EJX54225.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R496]
gi|402946393|gb|EJX64674.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R446]
gi|402952005|gb|EJX69866.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1137]
gi|402953338|gb|EJX71063.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1140]
gi|402962168|gb|EJX79137.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV99]
gi|402967955|gb|EJX84466.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV69]
gi|402973745|gb|EJX89845.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV38]
gi|402977156|gb|EJX92995.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV168]
gi|402978215|gb|EJX93973.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV26]
gi|402986313|gb|EJY01444.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV165]
gi|402988977|gb|EJY03941.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV161]
gi|402992431|gb|EJY07139.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV102]
gi|402996952|gb|EJY11308.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV1]
gi|402997720|gb|EJY12029.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E422]
gi|403000335|gb|EJY14462.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E417]
gi|403002697|gb|EJY16644.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C497]
gi|403004081|gb|EJY17911.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C621]
gi|403004113|gb|EJY17941.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C1904]
gi|403009946|gb|EJY23359.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 515]
gi|403018997|gb|EJY31633.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 514]
gi|403027273|gb|EJY39167.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 511]
gi|403029941|gb|EJY41662.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 510]
gi|403030418|gb|EJY42102.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 506]
gi|403033364|gb|EJY44870.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 509]
gi|430480583|gb|ELA57757.1| DEAD/DEAH box helicase [Enterococcus faecium E0333]
gi|430537055|gb|ELA77408.1| DEAD/DEAH box helicase [Enterococcus faecium E1133]
gi|430546683|gb|ELA86626.1| DEAD/DEAH box helicase [Enterococcus faecium E1392]
gi|430592410|gb|ELB30425.1| DEAD/DEAH box helicase [Enterococcus faecium E1731]
gi|430611728|gb|ELB48804.1| DEAD/DEAH box helicase [Enterococcus faecium E2297]
gi|430616431|gb|ELB53345.1| DEAD/DEAH box helicase [Enterococcus faecium E2883]
gi|430630040|gb|ELB66417.1| DEAD/DEAH box helicase [Enterococcus faecium E1321]
gi|430636649|gb|ELB72713.1| DEAD/DEAH box helicase [Enterococcus faecium E2369]
gi|430636858|gb|ELB72912.1| DEAD/DEAH box helicase [Enterococcus faecium E1644]
gi|430640819|gb|ELB76647.1| DEAD/DEAH box helicase [Enterococcus faecium E2560]
gi|430641683|gb|ELB77478.1| DEAD/DEAH box helicase [Enterococcus faecium E4389]
gi|430647250|gb|ELB82698.1| DEAD/DEAH box helicase [Enterococcus faecium E6012]
gi|430649535|gb|ELB84911.1| DEAD/DEAH box helicase [Enterococcus faecium E6045]
Length = 503
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 135/250 (54%), Gaps = 15/250 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K + K++ NP ++ + E A+ I Y + K I++ L
Sbjct: 178 LLFSATMPPAIKNIGVKFMKNPHHVKIKAK--EMTADLIDQYYVRAKEYEKFDIMTRLFD 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V TIVF +TKR DE++ L + +E +HGD+SQ +R L F+ G +LV
Sbjct: 236 VQTPE-LTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++P DPE++VHR GRTGRAGK G ++ T ++ + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354
Query: 180 ERDVGCKFEFVSPPVVEDV----LESSAEQVVATL--NGVHPESVEFFTPTAQRLIEEKG 233
E + + PP ++ L ++ EQ+ L NG ++ + TA +L+EE
Sbjct: 355 ENLTKKRMTTLRPPTEKEAFKGQLGAAVEQIETKLAENG-----LDKYLQTADKLLEEYS 409
Query: 234 TDALAAALAQ 243
L A L +
Sbjct: 410 AQDLVALLLK 419
>gi|384262634|ref|YP_005417821.1| Superfamily II DNA and RNA helicase [Rhodospirillum photometricum
DSM 122]
gi|378403735|emb|CCG08851.1| Superfamily II DNA and RNA helicase [Rhodospirillum photometricum
DSM 122]
Length = 510
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 115/185 (62%), Gaps = 4/185 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+L SATMP+ ++ L+ +L +P + + + E I+ + +KR +L DL+
Sbjct: 186 VLLSATMPAPIRALANDFLRDPCEVQIAPQS--RPIERIEQSVMMVEGHAKRDVLVDLLR 243
Query: 61 VYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
A+G ++I+FT+TKR AD V+ L S + +E++HG+ SQ QR+R L F+ +LV
Sbjct: 244 QNAEG-RSIIFTRTKRGADRVTDHLRASGLPAESIHGNKSQVQRDRALAAFKGTMVRILV 302
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATD+AARG+D+ + + +YELPN PE +VHR GRT RAG G AI + S+R +R +
Sbjct: 303 ATDIAARGIDVDGISFVYNYELPNVPEAYVHRIGRTARAGASGVAISLCDPSERPLLRDI 362
Query: 180 ERDVG 184
ER +G
Sbjct: 363 ERLIG 367
>gi|350533075|ref|ZP_08912016.1| ATP-dependent RNA helicase DeaD [Vibrio rotiferianus DAT722]
Length = 639
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 126/213 (59%), Gaps = 4/213 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K + ++L +P+ +D+ G + ++ K +S L+
Sbjct: 184 VLFSATMPPMLKNIVERFLRDPVTVDVAGKN--HTVDKVQQQFWVVKGVEKDEAMSRLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG 212
ER E + P+ + V E+ ++ A L
Sbjct: 361 ERVTKSSMEEIQLPLRDQVAEARLSKLAAELEA 393
>gi|347530409|ref|YP_004837172.1| DEAD/DEAH box helicase-like protein [Roseburia hominis A2-183]
gi|345500557|gb|AEN95240.1| DEAD/DEAH box helicase-like protein [Roseburia hominis A2-183]
Length = 566
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 126/220 (57%), Gaps = 8/220 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP + ++RKY + +NI +V + E I+ Y + K +L+ L+
Sbjct: 219 ILFSATMPKPILDITRKYQHDAVNIKVV--KKELTVPSIEQYYYDVKRSDKVEVLTRLLD 276
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y ++VF TKR DE++ L +E LHGD+ Q QR+R + GFR GK +L+
Sbjct: 277 YY-NPKLSLVFCNTKRMVDELAEELKGRGYFAEGLHGDMKQSQRDRVMKGFRSGKTEILI 335
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ +V+ + +Y++P D E +VHR GRTGRAG+ G A + ++ +
Sbjct: 336 ATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDI 395
Query: 180 ERDVGCKFEFVSPPV--VEDVLESSAEQVVATLNGVHPES 217
R CK + V+ P+ +DV + AE+V+ + + E
Sbjct: 396 MR--YCKTKIVAMPIPSTDDVAQIKAEKVMEEIGRIIDEE 433
>gi|71906757|ref|YP_284344.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
N-terminal, partial [Dechloromonas aromatica RCB]
gi|71846378|gb|AAZ45874.1| ATP-dependent RNA helicase CsdA [Dechloromonas aromatica RCB]
Length = 606
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 138/256 (53%), Gaps = 12/256 (4%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++++++KYL P I + I+ + K L+ ++ V
Sbjct: 185 LFSATMPEQIRRVAQKYLVEPREIKI--KSATATVAAIRQVYWQVSGMHKLDALTRILEV 242
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
I+F +TK E++ L++ A+ AL+GD++Q RER + + G +++A
Sbjct: 243 EEDFDAAIIFVRTKTATVELADKLSARGYAAAALNGDLNQQMRERVIEQLKSGALDIVIA 302
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARG+D+P V +++Y++P D E +VHR GRTGRAG+ G AIL + R +R++E
Sbjct: 303 TDVAARGIDVPRVSHVVNYDIPYDTEAYVHRIGRTGRAGRTGNAILFVAPREIRMLRTIE 362
Query: 181 RDVGCKFEFVSPPVVEDVLESSA----EQVVATLNGVHPESVEFFTPTAQRLIEEK--GT 234
R ++ P DV +VV LN E ++FF+ ++ EE+ G
Sbjct: 363 RATRSPIAPLTLPSRADVTNKRVADFKSKVVEVLNA---EGLDFFSNIVSQIAEEQNVGA 419
Query: 235 DALAAALAQLSGFSRP 250
+ +AAALA ++ +P
Sbjct: 420 EEVAAALAMMAQEGKP 435
>gi|410452638|ref|ZP_11306602.1| ATP-dependent RNA helicase [Bacillus bataviensis LMG 21833]
gi|409934120|gb|EKN71036.1| ATP-dependent RNA helicase [Bacillus bataviensis LMG 21833]
Length = 496
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 131/221 (59%), Gaps = 10/221 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ +P + + E I+ Y + +K +L+ L+
Sbjct: 179 LLFSATMPGPIQRMAERFMKDPQIVRV--KTKELTMPSIEQYYLEVQERNKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S ALT +E +HGD++Q +R L F++G +LV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALTLRGYTAEGIHGDLTQAKRMSVLRKFKEGTIDILV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+ T ++ + +
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIALTFITPREKSYLAVV 355
Query: 180 ERDVGCKFEFVSPPVVEDVLE----SSAEQVVATL--NGVH 214
ER K E + P +++ LE + E++V T+ N +H
Sbjct: 356 ERTTKHKMEKMKAPTLDEALEGQQKAVVEKIVQTIESNNLH 396
>gi|219847371|ref|YP_002461804.1| DEAD/DEAH box helicase [Chloroflexus aggregans DSM 9485]
gi|219541630|gb|ACL23368.1| DEAD/DEAH box helicase domain protein [Chloroflexus aggregans DSM
9485]
Length = 550
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 114/198 (57%), Gaps = 4/198 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSAT+P V+ L+ +Y P+ + + Q I+ A K L ++
Sbjct: 179 LFSATLPPAVQSLTLRYTRQPVRVSIAAEQ--LTTPHIRQIYYEILARDKLDALCRVLDA 236
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
IVF +T+++ DE+ L A+E+LHGD+SQ R+R + FR+G+ VLVA
Sbjct: 237 EMPQ-LAIVFCRTRQEVDEIGERLQGRGYAAESLHGDLSQAVRDRVMRRFREGQLDVLVA 295
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDI V +I+Y++P DPE++VHR GRTGRAG+ G AI T +RR ++++E
Sbjct: 296 TDVAARGLDIAEVSHVINYDVPTDPESYVHRIGRTGRAGRAGVAITFITPRERRMLQTIE 355
Query: 181 RDVGCKFEFVSPPVVEDV 198
R + E P + DV
Sbjct: 356 RVTRTRIERCQMPTLADV 373
>gi|163758459|ref|ZP_02165547.1| ATP-dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
gi|162284748|gb|EDQ35031.1| ATP-dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
Length = 729
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 137/253 (54%), Gaps = 7/253 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSAT+PS + L+++Y + + G Q + L I+ A+S + + +++
Sbjct: 183 LMFSATVPSGIANLAKRYQTKAVRVTTAGEQKQHL--DIEYRALSVAPNDRENAVINVLR 240
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y IVF T+ + ++ ++ A AL G++SQ++R L R G+ V V
Sbjct: 241 FY-DAKNAIVFCSTRATVNHLTARFSNRGFAVVALSGELSQNERSHALQALRDGRAKVCV 299
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+P+++L+IH +LP PET +HRSGRTGRAG++G + ++ + RR L
Sbjct: 300 ATDVAARGLDLPDLELVIHADLPKSPETLLHRSGRTGRAGRKGVSAMIVPYNARRRTERL 359
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
D + PP E++L E+++A + E E + L+E G + +AA
Sbjct: 360 LSDARISAAWARPPSAEEILARDDERLLADPH-FEAEIGEDEADMVKALLERHGPEKVAA 418
Query: 240 AL--AQLSGFSRP 250
AL A +G S P
Sbjct: 419 ALMRAHRAGRSAP 431
>gi|255746441|ref|ZP_05420388.1| cold-shock DEAD-box protein A [Vibrio cholera CIRS 101]
gi|262148974|ref|ZP_06028121.1| cold-shock DEAD-box protein A [Vibrio cholerae INDRE 91/1]
gi|360037704|ref|YP_004939466.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 str.
2010EL-1786]
gi|379744210|ref|YP_005335262.1| cold-shock DEAD-box protein A [Vibrio cholerae IEC224]
gi|417811754|ref|ZP_12458415.1| cold-shock DEAD box protein A [Vibrio cholerae HC-49A2]
gi|417816943|ref|ZP_12463573.1| cold-shock DEAD box protein A [Vibrio cholerae HCUF01]
gi|418330362|ref|ZP_12941343.1| cold-shock DEAD box protein A [Vibrio cholerae HC-06A1]
gi|418337842|ref|ZP_12946737.1| cold-shock DEAD box protein A [Vibrio cholerae HC-23A1]
gi|418341896|ref|ZP_12948726.1| cold-shock DEAD box protein A [Vibrio cholerae HC-28A1]
gi|418349516|ref|ZP_12954248.1| cold-shock DEAD box protein A [Vibrio cholerae HC-43A1]
gi|418353968|ref|ZP_12956693.1| cold-shock DEAD box protein A [Vibrio cholerae HC-61A1]
gi|419826238|ref|ZP_14349741.1| dbpA RNA binding domain protein [Vibrio cholerae CP1033(6)]
gi|421317541|ref|ZP_15768111.1| cold-shock DEAD box protein A [Vibrio cholerae CP1032(5)]
gi|421320180|ref|ZP_15770738.1| cold-shock DEAD box protein A [Vibrio cholerae CP1038(11)]
gi|421324222|ref|ZP_15774749.1| cold-shock DEAD box protein A [Vibrio cholerae CP1041(14)]
gi|421327193|ref|ZP_15777711.1| cold-shock DEAD box protein A [Vibrio cholerae CP1042(15)]
gi|421332285|ref|ZP_15782764.1| cold-shock DEAD box protein A [Vibrio cholerae CP1046(19)]
gi|421335923|ref|ZP_15786386.1| cold-shock DEAD box protein A [Vibrio cholerae CP1048(21)]
gi|421339731|ref|ZP_15790165.1| cold-shock DEAD box protein A [Vibrio cholerae HC-20A2]
gi|421346512|ref|ZP_15796896.1| cold-shock DEAD box protein A [Vibrio cholerae HC-46A1]
gi|422889725|ref|ZP_16932194.1| cold-shock DEAD box protein A [Vibrio cholerae HC-40A1]
gi|422898635|ref|ZP_16935924.1| cold-shock DEAD box protein A [Vibrio cholerae HC-48A1]
gi|422904683|ref|ZP_16939575.1| cold-shock DEAD box protein A [Vibrio cholerae HC-70A1]
gi|422915030|ref|ZP_16949479.1| cold-shock DEAD box protein A [Vibrio cholerae HFU-02]
gi|422927691|ref|ZP_16960635.1| cold-shock DEAD box protein A [Vibrio cholerae HC-38A1]
gi|423146762|ref|ZP_17134250.1| cold-shock DEAD box protein A [Vibrio cholerae HC-19A1]
gi|423147752|ref|ZP_17135130.1| cold-shock DEAD box protein A [Vibrio cholerae HC-21A1]
gi|423151539|ref|ZP_17138770.1| cold-shock DEAD box protein A [Vibrio cholerae HC-22A1]
gi|423158165|ref|ZP_17145178.1| cold-shock DEAD box protein A [Vibrio cholerae HC-32A1]
gi|423161967|ref|ZP_17148839.1| cold-shock DEAD box protein A [Vibrio cholerae HC-33A2]
gi|423163057|ref|ZP_17149880.1| cold-shock DEAD box protein A [Vibrio cholerae HC-48B2]
gi|423732922|ref|ZP_17706165.1| dbpA RNA binding domain protein [Vibrio cholerae HC-17A1]
gi|423741886|ref|ZP_17710664.1| dbpA RNA binding domain protein [Vibrio cholerae HC-50A2]
gi|423910317|ref|ZP_17728305.1| dbpA RNA binding domain protein [Vibrio cholerae HC-62A1]
gi|423919387|ref|ZP_17729217.1| dbpA RNA binding domain protein [Vibrio cholerae HC-77A1]
gi|424002001|ref|ZP_17745086.1| cold-shock DEAD box protein A [Vibrio cholerae HC-17A2]
gi|424004242|ref|ZP_17747248.1| cold-shock DEAD box protein A [Vibrio cholerae HC-37A1]
gi|424022173|ref|ZP_17761856.1| cold-shock DEAD box protein A [Vibrio cholerae HC-62B1]
gi|424028957|ref|ZP_17768508.1| cold-shock DEAD box protein A [Vibrio cholerae HC-69A1]
gi|424588443|ref|ZP_18027939.1| cold-shock DEAD box protein A [Vibrio cholerae CP1030(3)]
gi|424593192|ref|ZP_18032551.1| cold-shock DEAD box protein A [Vibrio cholerae CP1040(13)]
gi|424597121|ref|ZP_18036338.1| cold-shock DEAD box protein A [Vibrio Cholerae CP1044(17)]
gi|424603945|ref|ZP_18042996.1| cold-shock DEAD box protein A [Vibrio cholerae CP1047(20)]
gi|424604697|ref|ZP_18043684.1| cold-shock DEAD box protein A [Vibrio cholerae CP1050(23)]
gi|424608524|ref|ZP_18047402.1| cold-shock DEAD box protein A [Vibrio cholerae HC-39A1]
gi|424615297|ref|ZP_18054013.1| cold-shock DEAD box protein A [Vibrio cholerae HC-41A1]
gi|424619146|ref|ZP_18057751.1| cold-shock DEAD box protein A [Vibrio cholerae HC-42A1]
gi|424620063|ref|ZP_18058611.1| cold-shock DEAD box protein A [Vibrio cholerae HC-47A1]
gi|424642688|ref|ZP_18080466.1| cold-shock DEAD box protein A [Vibrio cholerae HC-56A2]
gi|424650804|ref|ZP_18088350.1| cold-shock DEAD box protein A [Vibrio cholerae HC-57A2]
gi|424654585|ref|ZP_18091903.1| cold-shock DEAD box protein A [Vibrio cholerae HC-81A2]
gi|440711549|ref|ZP_20892190.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 4260B]
gi|443505549|ref|ZP_21072438.1| cold-shock DEAD box protein A [Vibrio cholerae HC-64A1]
gi|443509457|ref|ZP_21076152.1| cold-shock DEAD box protein A [Vibrio cholerae HC-65A1]
gi|443513286|ref|ZP_21079856.1| cold-shock DEAD box protein A [Vibrio cholerae HC-67A1]
gi|443517121|ref|ZP_21083566.1| cold-shock DEAD box protein A [Vibrio cholerae HC-68A1]
gi|443520773|ref|ZP_21087105.1| cold-shock DEAD box protein A [Vibrio cholerae HC-71A1]
gi|443521684|ref|ZP_21087960.1| cold-shock DEAD box protein A [Vibrio cholerae HC-72A2]
gi|443529708|ref|ZP_21095725.1| cold-shock DEAD box protein A [Vibrio cholerae HC-7A1]
gi|443533398|ref|ZP_21099344.1| cold-shock DEAD box protein A [Vibrio cholerae HC-80A1]
gi|443537075|ref|ZP_21102933.1| cold-shock DEAD box protein A [Vibrio cholerae HC-81A1]
gi|449057861|ref|ZP_21736157.1| Cold-shock DEAD-box protein A [Vibrio cholerae O1 str. Inaba G4222]
gi|255736195|gb|EET91593.1| cold-shock DEAD-box protein A [Vibrio cholera CIRS 101]
gi|262031252|gb|EEY49869.1| cold-shock DEAD-box protein A [Vibrio cholerae INDRE 91/1]
gi|340040093|gb|EGR01066.1| cold-shock DEAD box protein A [Vibrio cholerae HCUF01]
gi|340044574|gb|EGR05522.1| cold-shock DEAD box protein A [Vibrio cholerae HC-49A2]
gi|341627743|gb|EGS53041.1| cold-shock DEAD box protein A [Vibrio cholerae HC-70A1]
gi|341629303|gb|EGS54468.1| cold-shock DEAD box protein A [Vibrio cholerae HC-48A1]
gi|341629533|gb|EGS54685.1| cold-shock DEAD box protein A [Vibrio cholerae HC-40A1]
gi|341632554|gb|EGS57419.1| cold-shock DEAD box protein A [Vibrio cholerae HFU-02]
gi|341643170|gb|EGS67467.1| cold-shock DEAD box protein A [Vibrio cholerae HC-38A1]
gi|356417845|gb|EHH71456.1| cold-shock DEAD box protein A [Vibrio cholerae HC-19A1]
gi|356424073|gb|EHH77493.1| cold-shock DEAD box protein A [Vibrio cholerae HC-06A1]
gi|356424755|gb|EHH78152.1| cold-shock DEAD box protein A [Vibrio cholerae HC-21A1]
gi|356431226|gb|EHH84431.1| cold-shock DEAD box protein A [Vibrio cholerae HC-23A1]
gi|356435650|gb|EHH88800.1| cold-shock DEAD box protein A [Vibrio cholerae HC-32A1]
gi|356436734|gb|EHH89844.1| cold-shock DEAD box protein A [Vibrio cholerae HC-22A1]
gi|356439786|gb|EHH92749.1| cold-shock DEAD box protein A [Vibrio cholerae HC-28A1]
gi|356440797|gb|EHH93729.1| cold-shock DEAD box protein A [Vibrio cholerae HC-33A2]
gi|356446378|gb|EHH99178.1| cold-shock DEAD box protein A [Vibrio cholerae HC-43A1]
gi|356455033|gb|EHI07680.1| cold-shock DEAD box protein A [Vibrio cholerae HC-61A1]
gi|356457236|gb|EHI09803.1| cold-shock DEAD box protein A [Vibrio cholerae HC-48B2]
gi|356648858|gb|AET28912.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 str.
2010EL-1786]
gi|378796804|gb|AFC60274.1| cold-shock DEAD-box protein A [Vibrio cholerae IEC224]
gi|395919999|gb|EJH30822.1| cold-shock DEAD box protein A [Vibrio cholerae CP1032(5)]
gi|395922236|gb|EJH33055.1| cold-shock DEAD box protein A [Vibrio cholerae CP1041(14)]
gi|395925068|gb|EJH35870.1| cold-shock DEAD box protein A [Vibrio cholerae CP1038(11)]
gi|395931083|gb|EJH41829.1| cold-shock DEAD box protein A [Vibrio cholerae CP1046(19)]
gi|395934118|gb|EJH44857.1| cold-shock DEAD box protein A [Vibrio cholerae CP1042(15)]
gi|395935605|gb|EJH46340.1| cold-shock DEAD box protein A [Vibrio cholerae CP1048(21)]
gi|395941290|gb|EJH51968.1| cold-shock DEAD box protein A [Vibrio cholerae HC-20A2]
gi|395948039|gb|EJH58694.1| cold-shock DEAD box protein A [Vibrio cholerae HC-46A1]
gi|395955100|gb|EJH65704.1| cold-shock DEAD box protein A [Vibrio cholerae HC-42A1]
gi|395966596|gb|EJH76713.1| cold-shock DEAD box protein A [Vibrio cholerae HC-57A2]
gi|395967297|gb|EJH77393.1| cold-shock DEAD box protein A [Vibrio cholerae HC-56A2]
gi|395968492|gb|EJH78444.1| cold-shock DEAD box protein A [Vibrio cholerae CP1030(3)]
gi|395969359|gb|EJH79241.1| cold-shock DEAD box protein A [Vibrio cholerae CP1047(20)]
gi|395978783|gb|EJH88152.1| cold-shock DEAD box protein A [Vibrio cholerae HC-47A1]
gi|408006419|gb|EKG44567.1| cold-shock DEAD box protein A [Vibrio cholerae HC-41A1]
gi|408012419|gb|EKG50198.1| cold-shock DEAD box protein A [Vibrio cholerae HC-39A1]
gi|408039736|gb|EKG76005.1| cold-shock DEAD box protein A [Vibrio cholerae CP1040(13)]
gi|408046854|gb|EKG82518.1| cold-shock DEAD box protein A [Vibrio Cholerae CP1044(17)]
gi|408048545|gb|EKG83951.1| cold-shock DEAD box protein A [Vibrio cholerae CP1050(23)]
gi|408059272|gb|EKG94040.1| cold-shock DEAD box protein A [Vibrio cholerae HC-81A2]
gi|408609028|gb|EKK82411.1| dbpA RNA binding domain protein [Vibrio cholerae CP1033(6)]
gi|408616441|gb|EKK89595.1| dbpA RNA binding domain protein [Vibrio cholerae HC-17A1]
gi|408646650|gb|EKL18233.1| dbpA RNA binding domain protein [Vibrio cholerae HC-50A2]
gi|408649426|gb|EKL20739.1| dbpA RNA binding domain protein [Vibrio cholerae HC-62A1]
gi|408661260|gb|EKL32245.1| dbpA RNA binding domain protein [Vibrio cholerae HC-77A1]
gi|408847857|gb|EKL87915.1| cold-shock DEAD box protein A [Vibrio cholerae HC-17A2]
gi|408850986|gb|EKL90926.1| cold-shock DEAD box protein A [Vibrio cholerae HC-37A1]
gi|408872348|gb|EKM11568.1| cold-shock DEAD box protein A [Vibrio cholerae HC-69A1]
gi|408876938|gb|EKM16042.1| cold-shock DEAD box protein A [Vibrio cholerae HC-62B1]
gi|439973036|gb|ELP49279.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 4260B]
gi|443429993|gb|ELS72614.1| cold-shock DEAD box protein A [Vibrio cholerae HC-64A1]
gi|443433860|gb|ELS80072.1| cold-shock DEAD box protein A [Vibrio cholerae HC-65A1]
gi|443437457|gb|ELS87240.1| cold-shock DEAD box protein A [Vibrio cholerae HC-67A1]
gi|443441280|gb|ELS94648.1| cold-shock DEAD box protein A [Vibrio cholerae HC-68A1]
gi|443445532|gb|ELT02252.1| cold-shock DEAD box protein A [Vibrio cholerae HC-71A1]
gi|443452146|gb|ELT12374.1| cold-shock DEAD box protein A [Vibrio cholerae HC-72A2]
gi|443459278|gb|ELT26672.1| cold-shock DEAD box protein A [Vibrio cholerae HC-7A1]
gi|443463363|gb|ELT34368.1| cold-shock DEAD box protein A [Vibrio cholerae HC-80A1]
gi|443467084|gb|ELT41740.1| cold-shock DEAD box protein A [Vibrio cholerae HC-81A1]
gi|448262884|gb|EMB00131.1| Cold-shock DEAD-box protein A [Vibrio cholerae O1 str. Inaba G4222]
Length = 643
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 145/254 (57%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP VK++ ++L NP +D+ G+ ++ +A+ + Y + K ++ L+
Sbjct: 184 VLFSATMPPMVKEIVERFLRNPECVDVAGS-NQTVAKVEQQYWV-VKGVEKDEAMARLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTDA-- 236
ER E + P + V ES ++ L S+E F ++L DA
Sbjct: 361 ERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASLEIDATT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAILLKRQQGKRP 434
>gi|427383474|ref|ZP_18880194.1| hypothetical protein HMPREF9447_01227 [Bacteroides oleiciplenus YIT
12058]
gi|425728658|gb|EKU91513.1| hypothetical protein HMPREF9447_01227 [Bacteroides oleiciplenus YIT
12058]
Length = 484
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 118/188 (62%), Gaps = 4/188 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+ FSATMP + +L++ L NP +++ + E I K+ +L+ L+
Sbjct: 186 LFFSATMPDSIDRLAKSLLHNPARVEVTPASS--VVEIISQSVYRVEKPQKKELLAQLLL 243
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
A G + +VF++TK AD ++ L+ IA E++HGD SQ+ R+R L+ F++G+ V++
Sbjct: 244 GEA-GHQVLVFSRTKHGADNIARYLSRRGIACESIHGDKSQNARQRALSNFKEGRSNVII 302
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATD+AARG+DI +DL+++++LP+ PET+VHR GRTGRAG EG AI +S + +R +
Sbjct: 303 ATDIAARGIDIKGLDLVLNFDLPDVPETYVHRIGRTGRAGCEGRAIAFCSSEEAPMLREI 362
Query: 180 ERDVGCKF 187
E+ G K
Sbjct: 363 EKLTGIKL 370
>gi|262396820|ref|YP_003288673.1| cold-shock DEAD-box protein A [Vibrio sp. Ex25]
gi|262340414|gb|ACY54208.1| cold-shock DEAD-box protein A [Vibrio sp. Ex25]
Length = 644
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 142/254 (55%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +KK+ ++L P+ +D+ G + ++ K +S L+
Sbjct: 184 VLFSATMPPMLKKIVERFLREPVMVDVAGKN--HTVDKVQQQFWVVKGVEKDEAMSRLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTD--A 236
ER E + P+ + V E+ ++ A L ++++ F ++L D
Sbjct: 361 ERVTKSSMEEIQLPLRDQVAEARLAKLGAELEAEKEHKALDKFAELVEKLQTSLDIDPAT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAMLLKRQQGKRP 434
>gi|406934671|gb|EKD68890.1| hypothetical protein ACD_47C00384G0003, partial [uncultured
bacterium]
Length = 637
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 137/249 (55%), Gaps = 8/249 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMP + +L++K+ NP ID+ ++ A I+ + SK L+ LI
Sbjct: 182 IMFSATMPEDIAQLTKKFQKNPARIDVSCHKMN--APKIEQFYYELLEKSKPEALARLID 239
Query: 61 VYAKGGK-TIVFTQTKRDADE-VSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
Y G K +VF TK DE V + T +EALHGD++Q R++ ++GFR G +L
Sbjct: 240 FY--GVKLALVFCNTKMRVDELVEVLKTRGYLAEALHGDLNQRMRDKVMSGFRSGLIEIL 297
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVA RG+D+ +V+ + +Y+LP D E +VHR GRT RAGK G A TS Q ++
Sbjct: 298 VATDVAGRGIDVNDVEAVFNYDLPRDDEDYVHRIGRTARAGKSGKAFTFVTSRQLSNLKR 357
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDA- 236
+ERD K P + D+ E+ + + + + + + + LIEE T
Sbjct: 358 IERDFDLKVSCRRVPSLSDLDETRLKFYSEKIKEILAQGGLTKYVRIVENLIEEDYTTLD 417
Query: 237 LAAALAQLS 245
+AAAL +++
Sbjct: 418 IAAALLRMA 426
>gi|424869804|ref|ZP_18293485.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R497]
gi|402935190|gb|EJX54460.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R497]
Length = 501
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 135/250 (54%), Gaps = 15/250 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K + K++ NP ++ + E A+ I Y + K I++ L
Sbjct: 178 LLFSATMPPAIKNIGVKFMKNPHHVKIKAK--EMTADLIDQYYVRAKEYEKFDIMTRLFD 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V TIVF +TKR DE++ L + +E +HGD+SQ +R L F+ G +LV
Sbjct: 236 VQTPE-LTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++P DPE++VHR GRTGRAGK G ++ T ++ + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354
Query: 180 ERDVGCKFEFVSPPVVEDV----LESSAEQVVATL--NGVHPESVEFFTPTAQRLIEEKG 233
E + + PP ++ L ++ EQ+ L NG ++ + TA +L+EE
Sbjct: 355 ENLTKKRMTTLRPPTEKEAFKGQLGAAVEQIETKLAENG-----LDKYLQTADKLLEEYS 409
Query: 234 TDALAAALAQ 243
L A L +
Sbjct: 410 AQDLVALLLK 419
>gi|229506042|ref|ZP_04395551.1| cold-shock DEAD-box protein A [Vibrio cholerae BX 330286]
gi|229510102|ref|ZP_04399582.1| cold-shock DEAD-box protein A [Vibrio cholerae B33]
gi|229517768|ref|ZP_04407213.1| cold-shock DEAD-box protein A [Vibrio cholerae RC9]
gi|229605573|ref|YP_002876277.1| cold-shock DEAD-box protein A [Vibrio cholerae MJ-1236]
gi|229345804|gb|EEO10777.1| cold-shock DEAD-box protein A [Vibrio cholerae RC9]
gi|229352547|gb|EEO17487.1| cold-shock DEAD-box protein A [Vibrio cholerae B33]
gi|229356393|gb|EEO21311.1| cold-shock DEAD-box protein A [Vibrio cholerae BX 330286]
gi|229372059|gb|ACQ62481.1| cold-shock DEAD-box protein A [Vibrio cholerae MJ-1236]
Length = 653
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 145/254 (57%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP VK++ ++L NP +D+ G+ ++ +A+ + Y + K ++ L+
Sbjct: 194 VLFSATMPPMVKEIVERFLRNPECVDVAGS-NQTVAKVEQQYWV-VKGVEKDEAMARLLE 251
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LV
Sbjct: 252 T-EETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 310
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 311 ATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 370
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTDA-- 236
ER E + P + V ES ++ L S+E F ++L DA
Sbjct: 371 ERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASLEIDATT 430
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 431 LAAILLKRQQGKRP 444
>gi|70994563|ref|XP_752059.1| ATP dependent RNA helicase (Dbp1) [Aspergillus fumigatus Af293]
gi|74671260|sp|Q4WP13.1|DED1_ASPFU RecName: Full=ATP-dependent RNA helicase ded1
gi|66849693|gb|EAL90021.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus fumigatus
Af293]
Length = 674
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 110/182 (60%), Gaps = 7/182 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNP--LNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
++FSAT P ++ L+R +L + L++ VG+ E + + ++ KR++L D+
Sbjct: 388 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEY----VEDHDKRSVLLDI 443
Query: 59 ITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
+ + G T++F +TKR AD +S L + A+HGD +Q +RER L FR G+ +
Sbjct: 444 LHTHGTSGLTLIFVETKRMADALSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPI 503
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVAT VAARGLDIPNV +I+Y+LP D + +VHR GRTGRAG G A F S R VR
Sbjct: 504 LVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRSNRGVVR 563
Query: 178 SL 179
L
Sbjct: 564 EL 565
>gi|21226849|ref|NP_632771.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
gi|20905151|gb|AAM30443.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
Length = 587
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 145/253 (57%), Gaps = 17/253 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI--KLYAISTTATSKRTILSDL 58
+ FSATMP + + +K++ N +I + + E+L E + ++Y + K L +
Sbjct: 183 LFFSATMPKAILGIVKKHMQNYEHITI---EKEELTETLTEQIY-FEVKESDKFEALCRI 238
Query: 59 ITV----YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQG 113
I + Y +VF +TK D +++ L+ ++ALHGD+SQ +RE+ LN FR+
Sbjct: 239 IDIEDEFYG-----LVFCRTKTDTSQLAQKLSDRGYLADALHGDLSQQEREKILNKFRKQ 293
Query: 114 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 173
K +L ATDVAARG+DI ++ +I+Y LP DPE++VHR GRTGRAGK+GTAI TS++
Sbjct: 294 KINILAATDVAARGIDIMDLTHVINYALPQDPESYVHRIGRTGRAGKQGTAITFVTSTEF 353
Query: 174 RTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEK 232
R + +++ + + P ++DV+++ +V L + E +Q+L+EE
Sbjct: 354 RRLTYIKKTSKSEMKKGHIPEIKDVIKAKRARVRTELEETIKTEEYGDCLEMSQKLLEEY 413
Query: 233 GTDALAAALAQLS 245
+ + AAL + +
Sbjct: 414 PAEKILAALLKFT 426
>gi|333920975|ref|YP_004494556.1| putative ATP-dependent RNA helicase [Amycolicicoccus subflavus
DQS3-9A1]
gi|333483196|gb|AEF41756.1| Putative ATP-dependent RNA helicase [Amycolicicoccus subflavus
DQS3-9A1]
Length = 587
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 142/253 (56%), Gaps = 23/253 (9%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++++SR YL +P + + K ++ I + + K L+ + V
Sbjct: 188 LFSATMPRAIREISRTYLRDPAEVTI--KSTTKTSDTINQRWVLVSHARKLDALTRFLEV 245
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
++F +TK+ DE++ L + AS +L+GDI Q RER + R GK +LVA
Sbjct: 246 EPFDA-MLIFVRTKQATDELAEKLRARGFASTSLNGDIPQPVRERIVGELRAGKIDILVA 304
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDV ARGLD+ + ++++++P D +++VHR GRTGRAG+ G A+L T +RR +RS+E
Sbjct: 305 TDVVARGLDVERISHVVNFDIPTDNDSYVHRIGRTGRAGRSGEALLFVTPRERRLLRSIE 364
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQV-----VATLNGVHPESVEFFTPTAQRLIE--EKG 233
R G E + P VEDV +A++V T N +P+ F +RLIE E+
Sbjct: 365 RSTGQPLEEIQVPTVEDV---NAQRVSRFEDAITENLSNPDLALF-----RRLIEGYERE 416
Query: 234 TDA----LAAALA 242
D +AAALA
Sbjct: 417 HDVCMADIAAALA 429
>gi|254555590|ref|YP_003062007.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
gi|300769652|ref|ZP_07079536.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308179612|ref|YP_003923740.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|380031534|ref|YP_004888525.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
gi|418274186|ref|ZP_12889684.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum NC8]
gi|254044517|gb|ACT61310.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
gi|300492805|gb|EFK27989.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308045103|gb|ADN97646.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|342240777|emb|CCC78011.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
gi|376009752|gb|EHS83078.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum NC8]
Length = 528
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 140/250 (56%), Gaps = 10/250 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP +K++ +++ P ++ + E A+ + Y + K I++ L
Sbjct: 178 MLFSATMPPEIKRIGVQFMKEPHHVKI--KSKEMTADTVDQYYVKAKEFEKFDIMTRLFD 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTVLV 119
V A TIVF +TKR DE+S L + + A +HGD+SQ +R + + F+ GK +LV
Sbjct: 236 VQAPE-LTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFKAGKLDILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ V + +Y++P DP+++VHR GRTGRAG +G ++ T ++ +R +
Sbjct: 295 ATDVAARGLDVSGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSLTFVTPNEMEYLRVI 354
Query: 180 ERDVGCKFEFVSPPVVEDVLE---SSAEQVVATLNGVHPESVEFFTPTAQRLIEE-KGTD 235
E+ + + PP + ++AE V +L V S E + A L+++ TD
Sbjct: 355 EKLTKKRMLPLKPPTESEAFAGQLAAAEANVDSL--VAKTSTEKYADQAAELLQKYDATD 412
Query: 236 ALAAALAQLS 245
+AA L L+
Sbjct: 413 LVAALLNDLT 422
>gi|395243277|ref|ZP_10420264.1| ATP-dependent RNA helicase DeaD [Lactobacillus hominis CRBIP
24.179]
gi|394484507|emb|CCI81272.1| ATP-dependent RNA helicase DeaD [Lactobacillus hominis CRBIP
24.179]
Length = 489
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 140/251 (55%), Gaps = 13/251 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP + +S K++ +P + + G E A I Y + K IL LI
Sbjct: 178 LLFSATMPKPIMHISEKFMHDPEIVQIKGK--ELTANLIDQYFVRAKENEKFDILCRLID 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTVLV 119
V +VF +TKR DE++ L + + A +HGD+SQ++R L FR+GK +LV
Sbjct: 236 V-QNPDLAVVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQNKRMSVLKRFRKGKLDILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++P DP+++VHR GRTGRAGK G ++ T ++ +R++
Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGKNGMSVTFVTPNEIGYMRTI 354
Query: 180 ERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVHPESVEFFTPTAQRLIEE-KGT 234
E K + PP E+ L ++ ++V L+G + +T A +L+++
Sbjct: 355 ENLTHKKMMPLRPPSDEEAFKGQLSAANKKVQELLDG----DLSKYTEGAAKLLDDYSAV 410
Query: 235 DALAAALAQLS 245
D +AA L LS
Sbjct: 411 DLVAALLKDLS 421
>gi|359774481|ref|ZP_09277848.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia effusa NBRC
100432]
gi|359308367|dbj|GAB20626.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia effusa NBRC
100432]
Length = 574
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 128/218 (58%), Gaps = 8/218 (3%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP + +L++KYL NP + + A+ I + + K L+ ++ V
Sbjct: 186 LFSATMPKAIGRLAKKYLKNPTEVAV--ESKTATAQNITQKYLQVSHQRKLDALTRVLEV 243
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G IVF +TK+ +E++ L + ++ A++GD++Q QRERT+N + +LVA
Sbjct: 244 ETFDG-MIVFVRTKQATEELAERLRARGFSAVAINGDLAQAQRERTINQLKNSTIDILVA 302
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P+D E++VHR GRTGRAG+ GTA+L + +R +R++E
Sbjct: 303 TDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLRAIE 362
Query: 181 RDVGCKFEFVSPPVVEDV----LESSAEQVVATLNGVH 214
+ E + P V+DV E A+ + A L H
Sbjct: 363 KMTRQPLEEIDLPSVDDVNTQRKEKFADSITANLGSDH 400
>gi|354604010|ref|ZP_09022003.1| hypothetical protein HMPREF9450_00918 [Alistipes indistinctus YIT
12060]
gi|353348442|gb|EHB92714.1| hypothetical protein HMPREF9450_00918 [Alistipes indistinctus YIT
12060]
Length = 645
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 142/247 (57%), Gaps = 5/247 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ + +LS++Y+ + + + V +Q+ ++Y + K L+ +I
Sbjct: 185 LLFSATMPARIVELSKRYMKD-VEVLRVPSQEMTTDLTDQIY-FEVRDSDKFDALTRIID 242
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V + IVF +TK DE+ LT A+E LHGD+SQ QRE+ L F+ + T+L
Sbjct: 243 VEPEF-YGIVFCRTKVAVDELVTRLTQRGYAAEGLHGDVSQAQREKILKKFKNKQVTILA 301
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+DI N+ +I+Y LP D E++VHR GRTGRAG GTAI +SS+ R +
Sbjct: 302 ATDVAARGIDINNLTHVINYSLPQDSESYVHRIGRTGRAGNTGTAITFISSSEYRQFVMM 361
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
+R++ + V P ++V+E ++ L + E+ + A L++++ +
Sbjct: 362 QREIKVDIKKVPIPTAQNVVEIKKNRIKDELAEIIENENYTEYGEMAADLLKDQSPEVAM 421
Query: 239 AALAQLS 245
AA+ +L+
Sbjct: 422 AAVLRLA 428
>gi|453382103|dbj|GAC83310.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia paraffinivorans
NBRC 108238]
Length = 580
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 124/198 (62%), Gaps = 4/198 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMPS +++L+++YL++P I + A+ I + + K L+ + V
Sbjct: 195 LFSATMPSAIRRLAQRYLNDPQEITV--KSKTATAQNITQRYLQVSHQRKLDALTRFLEV 252
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ IVF +TK+ +E++ L S +++ A++GD++Q QRERT+N + G +LVA
Sbjct: 253 -EEFDAMIVFVRTKQATEELAEKLRSRGLSAVAINGDLAQAQRERTINQLKNGSIDILVA 311
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P+D E++VHR GRTGRAG+ G A+L + +R +R++E
Sbjct: 312 TDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFVSPRERHLLRAIE 371
Query: 181 RDVGCKFEFVSPPVVEDV 198
R + + P V+DV
Sbjct: 372 RATRQELTEIGLPSVDDV 389
>gi|448820186|ref|YP_007413348.1| ATP-dependent RNA helicase [Lactobacillus plantarum ZJ316]
gi|448273683|gb|AGE38202.1| ATP-dependent RNA helicase [Lactobacillus plantarum ZJ316]
Length = 528
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 140/250 (56%), Gaps = 10/250 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP +K++ +++ P ++ + E A+ + Y + K I++ L
Sbjct: 178 MLFSATMPPEIKRIGVQFMKEPHHVKI--KSKEMTADTVDQYYVKAKEFEKFDIMTRLFD 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTVLV 119
V A TIVF +TKR DE+S L + + A +HGD+SQ +R + + F+ GK +LV
Sbjct: 236 VQAPE-LTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFKAGKLDILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ V + +Y++P DP+++VHR GRTGRAG +G ++ T ++ +R +
Sbjct: 295 ATDVAARGLDVSGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSLTFVTPNEMEYLRVI 354
Query: 180 ERDVGCKFEFVSPPVVEDVLE---SSAEQVVATLNGVHPESVEFFTPTAQRLIEE-KGTD 235
E+ + + PP + ++AE V +L V S E + A L+++ TD
Sbjct: 355 EKLTKKRMLPLKPPTESEAFAGQLAAAEANVDSL--VAKTSTEKYADQAAELLQKYDATD 412
Query: 236 ALAAALAQLS 245
+AA L L+
Sbjct: 413 LVAALLNDLT 422
>gi|336325995|ref|YP_004605961.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
gi|336101977|gb|AEI09797.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
Length = 786
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 129/205 (62%), Gaps = 4/205 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++LS++YL++P I + Q + +E I+ + +K L+ ++ V
Sbjct: 297 LFSATMPAGIRRLSKQYLNDPQEITVKSTQ--RTSENIEQDYLFVNHRNKLEALTRILEV 354
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ I+F +TK + +E++ L + + A++GDI+Q QRERT++ + G+ +LVA
Sbjct: 355 -TEFEAMIMFVRTKNETEELAERLRARGFNAAAINGDIAQAQRERTVDQLKDGRLDILVA 413
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + + +Y++P+D E++VHR GRTGRAG+ G AIL T +RR ++++E
Sbjct: 414 TDVAARGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAGRSGRAILFVTPRERRLLKAIE 473
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQ 205
R + P V+ V ++ E+
Sbjct: 474 RATKSTLNEIELPSVDAVNDARKEK 498
>gi|323343824|ref|ZP_08084051.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
ATCC 33269]
gi|323095643|gb|EFZ38217.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
ATCC 33269]
Length = 626
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 132/218 (60%), Gaps = 15/218 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATM ++K+++ YL + I +VG+++E AE + A K L ++
Sbjct: 181 LLFSATMSKEIEKIAQNYLHDAKEI-VVGSRNEG-AESVNHIYYMVNAKDKYLALKRIVD 238
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y I+F +TKR+ E++ L +EALHGD+SQ QR+ T+ FRQ LV
Sbjct: 239 YYPHIF-AIIFCRTKRETQEIADKLIHDGYNAEALHGDLSQQQRDLTMQKFRQHMTQFLV 297
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ ++ +I+Y LP+D E++ HRSGRTGRAGK+GT+I + + +R +R++
Sbjct: 298 ATDVAARGLDVEDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHTRERSKMRAI 357
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAE----QVVATLNGV 213
E+ +G +F VE V+ ++ E Q+ T++ +
Sbjct: 358 EKVIGKQF-------VEGVMPTAKEICTKQLYKTMDEI 388
>gi|403738909|ref|ZP_10951510.1| putative DEAD-box RNA helicase [Austwickia chelonae NBRC 105200]
gi|403191559|dbj|GAB78280.1| putative DEAD-box RNA helicase [Austwickia chelonae NBRC 105200]
Length = 513
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 110/171 (64%), Gaps = 5/171 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNI-DLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
MLFSATMP V L+R+Y+ P +I + D + I+ + A K +LS ++
Sbjct: 219 MLFSATMPGAVVALARRYMTQPTHIRAMTTGDDSHTVQAIEQFIYRAHAMDKTEMLSRIL 278
Query: 60 TVYAKG-GKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
AKG G TIVFT+TKR A +V+ LT A+ +LHGD+ Q RE+ + FR+GK V
Sbjct: 279 Q--AKGRGLTIVFTRTKRTAAKVADELTDRGFAAASLHGDLGQGAREQAMRAFRKGKVDV 336
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 168
LVATDVAARG+D+ NV +++Y+ P D +T++HR+GRTGRAG+ G AI +
Sbjct: 337 LVATDVAARGIDVENVTHVVNYQCPEDEKTYLHRTGRTGRAGQTGIAITLV 387
>gi|402820563|ref|ZP_10870130.1| hypothetical protein IMCC14465_13640 [alpha proteobacterium
IMCC14465]
gi|402511306|gb|EJW21568.1| hypothetical protein IMCC14465_13640 [alpha proteobacterium
IMCC14465]
Length = 480
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 116/190 (61%), Gaps = 6/190 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+L SATMP ++ L+ + LDNP ++ + E I+ + KR + +
Sbjct: 184 VLLSATMPKPIRALASELLDNPRDVAVTPQSTP--VERIEQAVMLMDKPEKRPFV---VQ 238
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+TI+FT+TK AD++ L+ + + A+HG+ SQ+ R+RTL+ FR+G+ +L+
Sbjct: 239 ALENQFRTIIFTRTKHGADQLVKYLSKQGVTASAIHGNKSQNARQRTLDAFRKGEEHILI 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATD+AARG+DIP+V L+++Y++P PE +VHR GRT RAG+EG AI + +++ +R +
Sbjct: 299 ATDIAARGIDIPDVSLVVNYDVPTTPEAYVHRIGRTARAGREGRAITLCAPEEQKHLRDI 358
Query: 180 ERDVGCKFEF 189
ER + K
Sbjct: 359 ERLIKIKLPI 368
>gi|257885750|ref|ZP_05665403.1| helicase [Enterococcus faecium 1,231,501]
gi|257821606|gb|EEV48736.1| helicase [Enterococcus faecium 1,231,501]
Length = 503
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 135/250 (54%), Gaps = 15/250 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K + K++ NP ++ + E A+ I Y + K I++ L
Sbjct: 178 LLFSATMPPAIKNIGVKFMKNPHHVKIKAK--EVTADLIDQYYVRAKEYEKFDIMTRLFD 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V TIVF +TKR DE++ L + +E +HGD+SQ +R L F+ G +LV
Sbjct: 236 VQTPE-LTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++P DPE++VHR GRTGRAGK G ++ T ++ + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354
Query: 180 ERDVGCKFEFVSPPVVEDV----LESSAEQVVATL--NGVHPESVEFFTPTAQRLIEEKG 233
E + + PP ++ L ++ EQ+ L NG ++ + TA +L+EE
Sbjct: 355 ENLTKKRMTTLRPPTEKEAFKGQLGAAVEQIETKLAENG-----LDKYLQTADKLLEEYS 409
Query: 234 TDALAAALAQ 243
L A L +
Sbjct: 410 AQDLVALLLK 419
>gi|329895875|ref|ZP_08271203.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC3088]
gi|328922093|gb|EGG29452.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC3088]
Length = 515
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 126/206 (61%), Gaps = 4/206 (1%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP+ +++++ YL +P +I + Q A I+ + SK L+ ++ V
Sbjct: 187 LFSATMPTAIRRIASDYLQDPQHITV--TQKTVTATSIRQRVWMISGASKLDGLTRILEV 244
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
G I+F +TK E++ L + A+ AL+GD++Q RE+ ++ ++G+ ++VA
Sbjct: 245 EDFDG-LIIFARTKIATTELADKLQARGFAAAALNGDMAQSAREQVISQLKKGRLDIVVA 303
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + +++Y++P DPE +VHR GRTGRAG++G AIL + ++R +R +E
Sbjct: 304 TDVAARGLDVDRITHVVNYDIPQDPEAYVHRIGRTGRAGRKGEAILFAANREQRLLRMIE 363
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQV 206
R G E + P DV ++ AE++
Sbjct: 364 RTTGQPIELMRLPTASDVADAKAEKI 389
>gi|357060810|ref|ZP_09121574.1| hypothetical protein HMPREF9332_01131 [Alloprevotella rava F0323]
gi|355375643|gb|EHG22926.1| hypothetical protein HMPREF9332_01131 [Alloprevotella rava F0323]
Length = 630
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/233 (37%), Positives = 132/233 (56%), Gaps = 6/233 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATM V+ +++ YL N I +VG+++E AE + A K L ++
Sbjct: 203 LLFSATMSKEVENIAKNYLHNHKEI-VVGSRNEG-AEKVNHVYYMVQARDKYAALKRVVD 260
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y + IVF +T+ + EV+ L +EALHGD+SQ QR+ T+ FRQ +LV
Sbjct: 261 YYPRI-YAIVFCRTRMETQEVADNLIRDGYNAEALHGDLSQAQRDLTMQKFRQHTIQLLV 319
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ ++ +I+Y LP+D E++ HRSGRTGRAGK GT+I + ++ VR++
Sbjct: 320 ATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKRGTSICIIHQREKGKVRAI 379
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL--NGVHPESVEFFTPTAQRLIE 230
ER +G +FE P +++ V+ L V + F P R ++
Sbjct: 380 ERILGKEFEVGVLPEPKEICTKQLYHVIDRLERQEVDENEIAPFMPEVLRKLD 432
>gi|452851771|ref|YP_007493455.1| DEAD/DEAH box helicase domain protein [Desulfovibrio piezophilus]
gi|451895425|emb|CCH48304.1| DEAD/DEAH box helicase domain protein [Desulfovibrio piezophilus]
Length = 581
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 140/244 (57%), Gaps = 7/244 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR-TILSDLI 59
+LFSATMP V +++ +++ + + V + K + + A S R L +I
Sbjct: 210 LLFSATMPREVMRIATEFMRD---YETVTVKTTKNDSPLIRHIFHEMADSDRFEALCRVI 266
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ +VFT+T+ DAD V+ L +E +HG+ISQ++RE LN FR+ + T+L
Sbjct: 267 DAQPEF-YGLVFTRTRADADTVAERLNERGYPAEPIHGEISQNRREDILNRFRRRRATIL 325
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARG+D+P++ ++++ LP DP TFVHR+GRTGRAGKEG AI + T ++ R +
Sbjct: 326 VATDVAARGIDVPDLTHVVNFALPQDPPTFVHRTGRTGRAGKEGIAITLITPNEFRRLMY 385
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVE-FFTPTAQRLIEEKGTDAL 237
+ + G + P ++DV+ S ++V L + E + P A+ L+ E+ +
Sbjct: 386 ITKSSGIEISKEKLPRIQDVIYSKKSRMVTKLESIMAEDDHSAYQPMAKELMSEQDPAEI 445
Query: 238 AAAL 241
AAL
Sbjct: 446 IAAL 449
>gi|325295336|ref|YP_004281850.1| DEAD/DEAH box helicase [Desulfurobacterium thermolithotrophum DSM
11699]
gi|325065784|gb|ADY73791.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 425
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/186 (41%), Positives = 107/186 (57%), Gaps = 22/186 (11%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD--- 57
+LFSATMP ++KL YL + VG + T +R I
Sbjct: 189 LLFSATMPYEIRKLIDNYLKSGYKTIKVGKN------------LITPKVHQRIIFVKSED 236
Query: 58 ------LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGF 110
+ +G TIVF +TKRDA E+ L I + A+HGD+SQ QRE + F
Sbjct: 237 KLKALEKLLKEHQGTSTIVFVKTKRDAAEIEKELQKRSINARAIHGDLSQRQRENVMKAF 296
Query: 111 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 170
++GK LVATDVAARG+DI +V L+I+YELP +PE++VHR GRTGRAG+EGTAI +
Sbjct: 297 KEGKVKTLVATDVAARGIDIKDVGLVINYELPENPESYVHRIGRTGRAGREGTAISLVAD 356
Query: 171 SQRRTV 176
+++R +
Sbjct: 357 NEKRRI 362
>gi|262340963|ref|YP_003283818.1| ATP-dependent RNA helicase [Blattabacterium sp. (Blattella
germanica) str. Bge]
gi|262272300|gb|ACY40208.1| ATP-dependent RNA helicase [Blattabacterium sp. (Blattella
germanica) str. Bge]
Length = 551
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 132/236 (55%), Gaps = 18/236 (7%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIK-LYAISTTATSKRTILSDLI 59
+LFSATM ++ ++R YL +P ++++ Q +++G+K +Y + K + L ++
Sbjct: 183 LLFSATMSKYMNAIARTYLTDP--VEIIAGQKNIVSDGVKHIYYMVGHLNKKYSALKRIV 240
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ G I+F +TK++ E++ L ++AL+GD+SQ QRE +N FR L
Sbjct: 241 DI-NPGIYGIIFCETKKETKEIAEYLIKDGYNADALYGDLSQTQRESVMNRFRNKNLQFL 299
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLD+ N+ +I+Y LP + + ++HRSGRTGRAG G ++ + S + R ++
Sbjct: 300 VATDVAARGLDVHNITHVINYNLPKESDIYIHRSGRTGRAGNSGISVCIIHSKETRNLKE 359
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVAT----------LNGVHPE---SVEFF 221
E+ +G FE V P +++ E + +N PE ++EFF
Sbjct: 360 FEKRIGKSFERVMVPNGKEICEKQLLYFIEKVKKVVVDEKLMNQFLPEIQKNLEFF 415
>gi|261878837|ref|ZP_06005264.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
bergensis DSM 17361]
gi|270334579|gb|EFA45365.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
bergensis DSM 17361]
Length = 632
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 133/220 (60%), Gaps = 7/220 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATM ++K+++ YL++ I +VG+++E AE + A K L ++
Sbjct: 181 LLFSATMGKEIEKIAKSYLNDYKEI-VVGSRNEG-AENVNHVYYMVNAKDKYLALKRIVD 238
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y IVF +TK + E++ L +EALHGD+SQ QR+ T+ FR+ +LV
Sbjct: 239 YYP-NIYGIVFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRKHITQLLV 297
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ ++ +I+Y LP+D E++ HRSGRTGRAGK+GT+I + + ++ VRS+
Sbjct: 298 ATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSIAIIHTREKHKVRSI 357
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVE 219
E+ +G +F P E++ + +Q+ +N + V+
Sbjct: 358 EKIIGKEFVDDELPAPEEICK---KQLYKMMNNIMKTDVD 394
>gi|169831556|ref|YP_001717538.1| DEAD/DEAH box helicase [Candidatus Desulforudis audaxviator MP104C]
gi|169638400|gb|ACA59906.1| DEAD/DEAH box helicase domain protein [Candidatus Desulforudis
audaxviator MP104C]
Length = 533
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 122/205 (59%), Gaps = 4/205 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSAT+P + +L+ KY+ P+++ + N + A I L ++
Sbjct: 185 LLFSATIPGPIARLAEKYMRTPVHVSI--NPEYVAAPDIWQVYYELRNIDHLEALCRILD 242
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
A + I+F +TKR DE++ AL S +++ +HGD+ Q+QR R + FR+G+ +LV
Sbjct: 243 AEAVE-RAIIFCRTKRRVDELAEALRSRGYSADHIHGDLEQNQRNRVMGAFREGEIDLLV 301
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ N+ +I+Y+ P DPE++VHR GRTGRAG+ GTAI + + +R++
Sbjct: 302 ATDVAARGIDVQNISHVINYDCPQDPESYVHRIGRTGRAGRTGTAITLVYPKELPLLRTI 361
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAE 204
+R V + E P + DV++ E
Sbjct: 362 QRLVKVRIERHPIPSLADVVDRRME 386
>gi|337745879|ref|YP_004640041.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus KNP414]
gi|379719836|ref|YP_005311967.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus 3016]
gi|386722433|ref|YP_006188759.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
gi|336297068|gb|AEI40171.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus KNP414]
gi|378568508|gb|AFC28818.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus 3016]
gi|384089558|gb|AFH60994.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
Length = 537
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 124/216 (57%), Gaps = 8/216 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP ++KL++++L +P ++ ++ Q A I I K L LI
Sbjct: 179 MLFSATMPVNIQKLAQQFLKDPEHVSVIPKQVS--APLIDQAYIELHERQKFEALCRLID 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ A I+F +TKR DE+S AL A+E LHGD+SQ+QR+ + FR G VLV
Sbjct: 237 MEAPE-LAIIFGRTKRRVDELSEALQKRGYAAEGLHGDLSQNQRDNVMRKFRDGSIDVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ V +I+++LP DPE++VHR GRTGRAGKEG A T + + +
Sbjct: 296 ATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGAAYTFVTPREIDHLHFI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLES----SAEQVVATLN 211
E+ + P + + +E +AE+V+ L
Sbjct: 356 EKITRHRITKKPIPSLAEAIEGKQKVTAERVLDVLQ 391
>gi|427403697|ref|ZP_18894579.1| hypothetical protein HMPREF9710_04175 [Massilia timonae CCUG 45783]
gi|425717680|gb|EKU80636.1| hypothetical protein HMPREF9710_04175 [Massilia timonae CCUG 45783]
Length = 539
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 117/203 (57%), Gaps = 14/203 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVG--NQDEKLAEGIKLYAISTTATSKRTILSDL 58
MLFSAT+ V ++R+ +PL I + N+ E + + + S + L D
Sbjct: 214 MLFSATLDGVVGNMARRITSDPLTIQIASATNRHENIVQRVHF----VDDLSHKNRLLDH 269
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTV 117
+ + +VFT TKRDAD ++ L + A+ ALHGD+ Q R RTL+ R+G V
Sbjct: 270 LLRDETLDQAVVFTATKRDADMIADRLNIAGFAAAALHGDMHQGARNRTLDSLRRGSVKV 329
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARG+D+PN+ +++Y+LP PE +VHR GRTGRAG+ GTAI + ++ +R
Sbjct: 330 LVATDVAARGIDVPNITHVVNYDLPKFPEDYVHRIGRTGRAGRNGTAISLVNHAENMNIR 389
Query: 178 SLERDVGCKFEFVSPPVVEDVLE 200
+ER F P+ +V+E
Sbjct: 390 RIER-------FTRQPIPVNVIE 405
>gi|403217071|emb|CCK71566.1| hypothetical protein KNAG_0H01520 [Kazachstania naganishii CBS
8797]
Length = 621
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 115/182 (63%), Gaps = 8/182 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNP--LNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
++FSAT P ++ L+R +L++ L++ VG+ E + + + + K++ L DL
Sbjct: 334 LMFSATFPRDIQHLARDFLNDYIFLSVGRVGSTSENITQKV----LYVDDMDKKSALLDL 389
Query: 59 ITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
++ KGG T++F +TKR AD+++ + I + A+HGD +Q +RER L F+ G V
Sbjct: 390 LSS-TKGGLTLIFVETKRMADQLTDFLIMQNIRATAIHGDRTQMERERALGAFKSGTADV 448
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVAT VAARGLDIPNV L+I+Y+LP D + +VHR GRTGRAG GTAI F + V+
Sbjct: 449 LVATAVAARGLDIPNVTLVINYDLPGDIDDYVHRIGRTGRAGNTGTAISFFNYNNNNIVK 508
Query: 178 SL 179
L
Sbjct: 509 GL 510
>gi|417810743|ref|ZP_12457421.1| ATP-dependent RNA helicase [Lactobacillus salivarius GJ-24]
gi|335348538|gb|EGM50040.1| ATP-dependent RNA helicase [Lactobacillus salivarius GJ-24]
Length = 499
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 141/258 (54%), Gaps = 13/258 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP + K+ K++ NP + + E + + Y + T K I++ LI
Sbjct: 186 LLFSATMPKEILKIGEKFMVNPQIVKIKAK--ELTTDLVDQYFVKTKEFEKFDIMTRLID 243
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTVLV 119
V A TIVF +TKR DE+S L + + A +HGD++Q +R L F+ G +LV
Sbjct: 244 VQAPE-LTIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILV 302
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++P DPE++VHR GRTGRAG GT++ T ++ +R +
Sbjct: 303 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRVI 362
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH----PESVEFFTPTAQRLIEEKGTD 235
E+ + + + PP + E+ QV + L+ + E + AQ L+E+ D
Sbjct: 363 EKLTKKRMDPLKPPTQD---EAFIGQVSSALDDIKDLIADTDTERYKAQAQALLEQ--YD 417
Query: 236 ALAAALAQLSGFSRPPSS 253
A+ A L+ ++ +S
Sbjct: 418 AVEVVAAFLNNMTKKDAS 435
>gi|334342520|ref|YP_004555124.1| DEAD/DEAH box helicase [Sphingobium chlorophenolicum L-1]
gi|334103195|gb|AEG50618.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
L-1]
Length = 584
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 122/412 (29%), Positives = 184/412 (44%), Gaps = 50/412 (12%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP + L+++Y + L I V DE+ I A++ + +L+
Sbjct: 182 LLFSATMPKPIVALAKRYQKDALRISTVS--DERGHGDISYQALTVAPADIENAVVNLLR 239
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y + I+F T+ + + +LT A+ AL G+ SQ++R L R + V V
Sbjct: 240 -YHEAETAILFCATRDNVRHLHASLTERGFAAVALSGEHSQNERNHALQALRDRRARVCV 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+PN+ L++H ELP D ET HRSGRTGRAGK+GTA+L+ +RR V S+
Sbjct: 299 ATDVAARGIDLPNLSLVVHVELPRDAETMQHRSGRTGRAGKKGTAVLIVPYPRRRRVESM 358
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239
R E+ +PP E + E ++ L E E L+E K +AA
Sbjct: 359 LRGAKIPVEWGTPPSKEAIQEQDNARLREKLME-RAELDEQDWALGAELLEAKSAKEIAA 417
Query: 240 ALAQLSGFSRPPSSRSLINHEQG---------------WVTLQLTR-DSAFSRGFMSARS 283
L + S + P+ L++ + W + + R +A R +
Sbjct: 418 MLVK-SARAALPAPEELLDASEAPQRRDGPRPGFEDTVWFRMDIGRSQNADPRWILPLIC 476
Query: 284 VMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLP 343
G +S +IG I I A + +F++P IA ++
Sbjct: 477 RRGHVSR------QDIGAIRIAAHE----TLFEIPSAIASRFVS---------------- 510
Query: 344 ALQDDGPSSDNYGR--FSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFR 393
AL+ G +SD F + R R G R G RG G + RG R
Sbjct: 511 ALKRTGEASDEGAEVSFQQVEGTPREAARENRREGPREGPRGKGRPNDRGPR 562
>gi|451970445|ref|ZP_21923671.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus E0666]
gi|451933531|gb|EMD81199.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus E0666]
Length = 640
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 142/254 (55%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +KK+ ++L P+ +D+ G + ++ K +S L+
Sbjct: 184 VLFSATMPPMLKKIVERFLREPVMVDVAGKN--HTVDKVQQQFWVVKGVEKDEAMSRLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L++ + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTD--A 236
ER E + P+ + V E+ ++ A L ++++ F ++L D
Sbjct: 361 ERVTKSSMEEIQLPLRDQVAEARLAKLGAELEAEKEHKALDKFAELVEKLQTSLEIDPAT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAMLLKRQQGKRP 434
>gi|258623163|ref|ZP_05718173.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM573]
gi|258584555|gb|EEW09294.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM573]
Length = 663
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 145/254 (57%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP VK++ ++L NP +D+ G+ ++ +A+ + Y + K ++ L+
Sbjct: 204 VLFSATMPPMVKEIVERFLRNPECVDVAGS-NQTVAKVEQQYWV-VKGVEKDEAMARLLE 261
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LV
Sbjct: 262 T-EETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 320
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 321 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 380
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA-- 236
ER E + P + V ES ++ L S+E F ++L D+
Sbjct: 381 ERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEHSSLERFADLVEKLQASLEIDSTT 440
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 441 LAAILLKRQQGKRP 454
>gi|94501919|ref|ZP_01308429.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
gi|94425972|gb|EAT10970.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
Length = 614
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 143/256 (55%), Gaps = 12/256 (4%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQ--DEKLAEGIKLYAISTTATSKRTILSDLI 59
LFSATMP +K ++ K+L P I + +E + + Y + + +L I
Sbjct: 185 LFSATMPKQIKAVAEKHLREPTEIRIKSKTATNESIEQK---YWLVKGVDKNQALLR--I 239
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
++ +VF +TK+ +EV+ + S + EAL+GD++Q QRER ++ ++G+ +L
Sbjct: 240 CETSEFDAMMVFVRTKQATEEVADYMRSHGLRCEALNGDVAQAQRERAVDRLKKGQVDML 299
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLD+ + +++Y++P D E++VHR GRTGRAG+ G AIL +RR + +
Sbjct: 300 VATDVAARGLDVERISHVVNYDIPYDAESYVHRIGRTGRAGRSGEAILFVRPRERRMLST 359
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQV-VATLNGVHPESVEFFTPTAQRLI-EEKGTDA 236
+ER K + + P ++V +Q V L + +E F A ++ E+ D
Sbjct: 360 IERVTRKKIQQIELPTAKEVNAKRRDQFKVRALEHIEGRDIEIFKKIASEILAEQPALDP 419
Query: 237 --LAAALAQLSGFSRP 250
LAAA AQ+S ++P
Sbjct: 420 IELAAAFAQMSQGNKP 435
>gi|291544767|emb|CBL17876.1| Superfamily II DNA and RNA helicases [Ruminococcus champanellensis
18P13]
Length = 555
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 110/339 (32%), Positives = 165/339 (48%), Gaps = 34/339 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP + +++++ +P I + + + I+ Y T K L L+
Sbjct: 162 VLFSATMPPEIMAITKQFQKDPTVIKIAAKH--RTVDTIEQYYYETAMGRKTDALRLLLL 219
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y + +VF TKR DE++ AL I + LHGD+ Q QR + +N F+ G+ VLV
Sbjct: 220 AY-EPKSAMVFCNTKRTVDELTEALCDKGIQAAGLHGDMKQMQRTQVMNAFKSGRIGVLV 278
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+D+ +DL+ +Y+LP D E ++HR GRTGRAGK GTA+ + S RR V +L
Sbjct: 279 ATDVAARGIDVNGIDLVFNYDLPQDNEYYIHRIGRTGRAGKSGTALTLV--SGRRQVFAL 336
Query: 180 ERDVG--CKFEFVSP--PVVEDVLESSAEQV---VATLNGVHPES----------VEFFT 222
RD+ K E + P D+ +Q+ VA P S E +T
Sbjct: 337 -RDIAKYTKAEIIQKALPTRADLAAKKTQQLHDAVAQACAEQPSSRAEELLNRLTEEGYT 395
Query: 223 P--TAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMS 280
AQ L+EEK L+A+L + F P R + VT + + ++
Sbjct: 396 AQQIAQVLLEEK----LSASLQSIPEFDAPQPIRREGKRGRSAVTTAKVDINIGRQQRIA 451
Query: 281 ARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPE 319
++G L D + + GKI I Q ++PE
Sbjct: 452 PNFILGALVDATGLSGKDFGKIDIFD----QHTTVEVPE 486
>gi|145222813|ref|YP_001133491.1| DEAD/DEAH box helicase [Mycobacterium gilvum PYR-GCK]
gi|145215299|gb|ABP44703.1| ATP-dependent RNA helicase CsdA [Mycobacterium gilvum PYR-GCK]
Length = 559
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 120/200 (60%), Gaps = 4/200 (2%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP +KK++ KYL +P+ + + + AE I + K L+ L+
Sbjct: 191 LFSATMPPAIKKITAKYLHDPVEVTV--KSKTQTAENITQRYFLVSYPRKMDALTRLLET 248
Query: 62 YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+G IVF +TK+ +EV+ L + A+ A++GDI Q RERT+ + G +LVA
Sbjct: 249 -EQGDAMIVFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTIAQLKDGTIDILVA 307
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+ + ++++++P+DPE++VHR GRTGRAG+ GTA+L T +R + ++E
Sbjct: 308 TDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLGAIE 367
Query: 181 RDVGCKFEFVSPPVVEDVLE 200
R K P V+DV E
Sbjct: 368 RVTRQKLVESELPSVDDVNE 387
>gi|336394535|ref|ZP_08575934.1| putative ATP-dependent RNA helicase [Lactobacillus farciminis KCTC
3681]
Length = 507
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 134/241 (55%), Gaps = 6/241 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP + K++ K+++ P + + E A+ I+ Y + K +++ L
Sbjct: 178 LLFSATMPKPIMKIADKFMNEPEVVKI--KSKELTADKIEQYFVKARDYEKFDLMTRLFD 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V A ++F +TKR DE++ L + +E +HGD+SQ +R L F+ GK LV
Sbjct: 236 VQAPE-LALIFGRTKRRVDELTRGLQARGYNAEGIHGDLSQDKRTSVLRKFKAGKLDFLV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++P DP+++VHR GRTGRAG G ++ T ++ +R++
Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGHSGVSVTFVTPNEMGYLRTI 354
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV--HPESVEFFTPTAQRLIEEKGTDAL 237
E + E ++PP ++VL+ E V + H + ++ F Q L+ E + +
Sbjct: 355 ENLTKKRMEPLAPPTDKEVLKGQLESVKQDIKDTLEHDKHLDRFDSAVQELLAEYSPEDI 414
Query: 238 A 238
A
Sbjct: 415 A 415
>gi|317127486|ref|YP_004093768.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
gi|315472434|gb|ADU29037.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
DSM 2522]
Length = 500
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 147/259 (56%), Gaps = 9/259 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K ++ ++++ P++I + Q E I+ I+ + K L +L+
Sbjct: 179 LLFSATMPPKLKTIADRFMNKPVSIAVKAKQ--LTVENIEQRYIALSEKEKFDTLCNLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI--IASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ I+F +TKR DE++ +L SI A E LHGD+ Q +R++ + F++G V+
Sbjct: 237 METPE-LAIIFGRTKRRVDELTESL-SIRGFAVEGLHGDMKQERRDQVIRKFKRGSIDVM 294
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLD+ +V +I+++LP D E++VHR GRTGRAGK+G + T ++ +R
Sbjct: 295 VATDVAARGLDVNDVSHVINFDLPQDSESYVHRIGRTGRAGKKGISYSFVTHKEKDHLRY 354
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDAL 237
+E K + V P + D + +Q V L V+ + + T A++L+EE D +
Sbjct: 355 IEESTRQKMKQVDAPTLADAMRGRHKQAVNELKKAVNNAASKQLTGEAKQLLEE--FDPV 412
Query: 238 AAALAQLSGFSRPPSSRSL 256
A L ++ PS + +
Sbjct: 413 VLVSAALQMVTKEPSKKQV 431
>gi|387907207|ref|YP_006337543.1| ATP-dependent RNA helicase [Blattabacterium sp. (Blaberus
giganteus)]
gi|387582100|gb|AFJ90878.1| ATP-dependent RNA helicase [Blattabacterium sp. (Blaberus
giganteus)]
Length = 547
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 120/201 (59%), Gaps = 3/201 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATM ++ +++KYL +P+ I +VG ++ + +Y I + K L ++
Sbjct: 182 LLFSATMSRYMNAIAKKYLIDPVEI-VVGKKNIGSDDVKHVYYIIENFSKKYLALKRIVD 240
Query: 61 VYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ I+F TK++ E++ + ++ALHGD+SQ QRE +N FR +LV
Sbjct: 241 I-NPDIYGIIFCSTKKETKEIAEFLIKDSYNADALHGDLSQTQRESVMNKFRNRNLQLLV 299
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ N+ +I+Y +PN+ ET+VHRSGRTGRAG G ++ + + + R +R
Sbjct: 300 ATDVAARGLDVNNITHVINYSIPNESETYVHRSGRTGRAGNIGISVCIIQTKEIRNLREF 359
Query: 180 ERDVGCKFEFVSPPVVEDVLE 200
E+ G F+ + P E++ E
Sbjct: 360 EKRTGKNFDRIMLPTGEEICE 380
>gi|255527323|ref|ZP_05394201.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
P7]
gi|255508970|gb|EET85332.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
P7]
Length = 527
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 168/344 (48%), Gaps = 37/344 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSATMP + KL+ KY+ N + +I +V N E IK Y + L ++
Sbjct: 180 LLFSATMPKEIAKLASKYMKNEVKHIKIVKNS--LTVEKIKQYYYEVKHKDRFESLCRIL 237
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ + I+F +TKR DE+ ++ + E +HGD+ Q+QR TL F++G L
Sbjct: 238 DI-DEPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGTLDFL 296
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARG+D+ +V +I+Y+LP D E++VHR GRTGRA KEG A + T + ++
Sbjct: 297 VATDVAARGIDVDDVSHVINYDLPQDMESYVHRIGRTGRANKEGIAYSLVTPREYIMIKQ 356
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDAL 237
LE+ K + P ++++ E+ ++ + N + + F P A L ++ +
Sbjct: 357 LEKFTKSKIKRKEIPTLDEIFEAKYNSMLKDVKNTLEQNDYKDFIPVATGLDDDYNLVDV 416
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFS-----RGFMSA--------RSV 284
AAAL ++ L + E + DS R F+S +
Sbjct: 417 AAALMKM-----------LFDREFNF---DYNEDSPVKSTKPVRLFLSVGRIDKVTPVKI 462
Query: 285 MGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNK 328
+ FL + +E+G I I + DLPE++ +L++
Sbjct: 463 LNFLEETSDIDVNEVGDIDIFD----KFTFIDLPEDLLDAVLSR 502
>gi|353558872|sp|C8V8H4.1|DED1_EMENI RecName: Full=ATP-dependent RNA helicase ded1
gi|259482717|tpe|CBF77461.1| TPA: ATP-dependent RNA helicase ded1 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:P0C2M6] [Aspergillus
nidulans FGSC A4]
Length = 668
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 110/182 (60%), Gaps = 7/182 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNP--LNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
++FSAT P ++ L+R +L + L++ VG+ E + + ++ KR++L D+
Sbjct: 384 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEY----VEDHDKRSVLLDI 439
Query: 59 ITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
+ + G T++F +TKR AD +S + + A+HGD +Q +RER L FR G++ +
Sbjct: 440 LHTHGTTGLTLIFVETKRMADALSEFLINQRFPATAIHGDRTQRERERALEMFRSGRYPI 499
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVAT VAARGLDIPNV +I+Y+LP D + +VHR GRTGRAG G A F R VR
Sbjct: 500 LVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVR 559
Query: 178 SL 179
L
Sbjct: 560 DL 561
>gi|424809183|ref|ZP_18234568.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus SX-4]
gi|342323608|gb|EGU19392.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus SX-4]
Length = 643
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 145/254 (57%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP VK++ ++L NP +D+ G+ ++ +A+ + Y + K ++ L+
Sbjct: 184 VLFSATMPPMVKEIVERFLRNPECVDVAGS-NQTVAKVEQQYWV-VKGVEKDEAMARLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA-- 236
ER E + P + V ES ++ L S+E F ++L D+
Sbjct: 361 ERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEHSSLERFADLVEKLQASLEIDSTT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAILLKRQQGKRP 434
>gi|113954045|ref|YP_730263.1| superfamily II DNA/RNA helicase [Synechococcus sp. CC9311]
gi|113881396|gb|ABI46354.1| Superfamily II DNA/RNA helicase [Synechococcus sp. CC9311]
Length = 601
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 119/200 (59%), Gaps = 16/200 (8%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +++LS++YL P I + +K A I+ I+ + K L+ ++
Sbjct: 226 VLFSATMPNEIRRLSKRYLREPAEITI--KTKDKEARRIRHRCITMQNSHKLEALNRVLE 283
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-------LHGDISQHQRERTLNGFRQG 113
G I+F +TK ++ LT + EA L+GD+ Q+QRERT+ R+G
Sbjct: 284 AVTGEG-VIIFARTK------AITLTVAESLEAAGHDVAVLNGDVPQNQRERTVERLRKG 336
Query: 114 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 173
+LVATDVAARGLD+ + L+I+Y++P D E +VHR GRTGRAG+ G AIL T +R
Sbjct: 337 TVNILVATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRSGDAILFITPRER 396
Query: 174 RTVRSLERDVGCKFEFVSPP 193
R V +LER VG E + P
Sbjct: 397 RFVGNLERAVGQAIEPMDIP 416
>gi|343514254|ref|ZP_08751334.1| cold-shock DEAD-box protein A [Vibrio sp. N418]
gi|342800566|gb|EGU36084.1| cold-shock DEAD-box protein A [Vibrio sp. N418]
Length = 680
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 142/254 (55%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K + ++L P+ +D+ G + ++ K +S L+
Sbjct: 184 VLFSATMPPMLKNIVERFLREPVMVDVAGKN--HTVDKVEQQFWVVKGVEKDEAMSRLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L++ + ALHGDI Q RERT++ + G +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKTGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ +Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRGNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA-- 236
ER + E + P+ + V E+ ++ A L ++++ F ++L E DA
Sbjct: 361 ERVTRSQMEEIQLPMRDQVAEARLIKLGAELEAEKEHKALDKFVELVEKLQESLEIDANT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAMLLKRQQGKRP 434
>gi|440227497|ref|YP_007334588.1| ATP-dependent RNA helicase protein [Rhizobium tropici CIAT 899]
gi|440039008|gb|AGB72042.1| ATP-dependent RNA helicase protein [Rhizobium tropici CIAT 899]
Length = 548
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 116/193 (60%), Gaps = 5/193 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLI 59
+LFSATMP + L+ YL NP+ +++ + K A+ ++ Y + +T IL + I
Sbjct: 184 LLFSATMPKAIGDLASDYLTNPVKVEV--SPPGKAADKVEQYVHFVAGQNHKTEILKETI 241
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ G + IVF +TK A+++ L + A+ ++HG+ SQ QRER L GFR G VL
Sbjct: 242 SANPDG-RAIVFLRTKHGAEKLMKHLDHVGFAAASIHGNKSQGQRERALKGFRDGDVRVL 300
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARG+DIP V + +++LP P+ +VHR GRT RAG++G AI + R +R
Sbjct: 301 VATDVAARGIDIPGVSHVYNFDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEIRLLRD 360
Query: 179 LERDVGCKFEFVS 191
+ER +G + S
Sbjct: 361 IERLMGIEIAVAS 373
>gi|39939200|ref|NP_950966.1| superfamily II DNA and RNA helicase [Onion yellows phytoplasma
OY-M]
gi|39722309|dbj|BAD04799.1| superfamily II DNA and RNA helicase [Onion yellows phytoplasma
OY-M]
Length = 552
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 142/255 (55%), Gaps = 24/255 (9%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL----AEGIKLYAIS-----TTATSK 51
+LFSAT+P ++KK++ KY +D K+ + I + AI K
Sbjct: 181 VLFSATLPPFIKKIASKY-----------QKDTKILQVPVKNIAVNAIEQNYFLVKEVDK 229
Query: 52 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGF 110
+L L+ + K I+F TK+D DE++ L ++A+HGD+ Q+QR+ +N F
Sbjct: 230 AKLLVRLLDL-KKDYSAILFANTKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNF 288
Query: 111 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 170
R+GK +L+ATDVAARGLDI ++ ++I+Y+LP++ E +VHR GRTGRAGK+G A + +
Sbjct: 289 RKGKIKILIATDVAARGLDISDIKMVINYDLPHEDEVYVHRIGRTGRAGKKGLAYSLISP 348
Query: 171 SQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPT--AQRL 228
+ ++ LE + K + P V+ + +A+ + L + ++ E TP AQ+L
Sbjct: 349 RKVSQLKKLEYYLKEKITLLDIPSVQSIKLQNAKDLEKKLLNIIEKNNEDATPNQLAQKL 408
Query: 229 IEEKGTDALAAALAQ 243
+E ++ + L +
Sbjct: 409 LETFSSEQIIQGLLK 423
>gi|409399600|ref|ZP_11249870.1| ATP-dependent RNA helicase [Acidocella sp. MX-AZ02]
gi|409131219|gb|EKN00931.1| ATP-dependent RNA helicase [Acidocella sp. MX-AZ02]
Length = 414
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 120/190 (63%), Gaps = 8/190 (4%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDL--VGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
LFSATMP+ + KL+ L P+ +++ V + ++ + + KR +L L+
Sbjct: 189 LFSATMPAEIAKLANGLLREPVRVEIEAVASTPSRIEQSVYF----AEGPEKRNLLIKLL 244
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ KT+VFT+TKR AD V+L L +S I++ ALHG++SQ+QR+R L+ F+ G+ L
Sbjct: 245 H-QPEFSKTVVFTRTKRGADRVALMLNSSKISAAALHGNLSQNQRQRALDAFKAGEVRAL 303
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATD+AARG+D+ V +I++ELPN+PE++VHR GRT R G +G A+ +++ +
Sbjct: 304 VATDIAARGIDVNAVSHVINFELPNEPESYVHRIGRTARNGADGVAVAFCDATELPYLTQ 363
Query: 179 LERDVGCKFE 188
+E+ G K +
Sbjct: 364 IEKLTGIKMK 373
>gi|374635240|ref|ZP_09706843.1| DEAD/DEAH box helicase domain protein [Methanotorris formicicus
Mc-S-70]
gi|373562963|gb|EHP89166.1| DEAD/DEAH box helicase domain protein [Methanotorris formicicus
Mc-S-70]
Length = 449
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 136/246 (55%), Gaps = 7/246 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR-TILSDLI 59
+LFSAT+P + L+++Y+ LV + E L + + SK+ L +I
Sbjct: 179 LLFSATLPRTILNLAKRYMGE---YKLVSVKKETLTTNLVEQIYYEVSNSKKFDALCRVI 235
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
V +VF +T+ D +EV+ L ++ALHGDI+Q QRER LN F++ + +L
Sbjct: 236 DV-EDDFYGLVFCKTRADVNEVANKLVENGYEADALHGDIAQKQRERILNKFKKKRINIL 294
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARG+DI N+ +I+Y LP +PE++VHR GRTGRAGK+GTAI + + R +
Sbjct: 295 VATDVAARGIDINNLTHVINYSLPQNPESYVHRIGRTGRAGKKGTAITFISPDEYRKLNY 354
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDAL 237
+++ P ED+ + +++ + + E+ + +Q+LIEE G +
Sbjct: 355 IKKIAKANIRKEKLPEKEDITNAKKSKILNKIAEIIKSENYLEYVELSQKLIEEFGAEKA 414
Query: 238 AAALAQ 243
A L +
Sbjct: 415 LAGLLK 420
>gi|149181312|ref|ZP_01859810.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
sp. SG-1]
gi|148851037|gb|EDL65189.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
sp. SG-1]
Length = 481
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 114/194 (58%), Gaps = 4/194 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
M+FSAT+P V+ L KY++NPL I++ A+ I+ I K ++L D IT
Sbjct: 181 MVFSATLPKDVENLCHKYMNNPLQIEI--ESTGVTADTIEHSLIEVREEEKISLLKD-IT 237
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V ++F +TK + D V L E LHG + Q R + GF+ G F LV
Sbjct: 238 VVENPDSCLIFCRTKENVDTVYSELEKAGYPCERLHGGLEQEDRFSVMEGFKLGNFRYLV 297
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+DI NV L+I+Y++P + E++VHR+GRTGRAG +G AI + T + + ++++
Sbjct: 298 ATDVAARGIDIDNVTLVINYDVPMEKESYVHRTGRTGRAGNKGKAITLSTPYEGKFIKAI 357
Query: 180 ERDVGCKFEFVSPP 193
ER +G + V P
Sbjct: 358 ERYIGFELPAVEAP 371
>gi|67528815|ref|XP_662070.1| hypothetical protein AN4466.2 [Aspergillus nidulans FGSC A4]
gi|40741041|gb|EAA60231.1| hypothetical protein AN4466.2 [Aspergillus nidulans FGSC A4]
Length = 1526
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 110/182 (60%), Gaps = 7/182 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNP--LNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
++FSAT P ++ L+R +L + L++ VG+ E + + ++ KR++L D+
Sbjct: 384 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEY----VEDHDKRSVLLDI 439
Query: 59 ITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
+ + G T++F +TKR AD +S + + A+HGD +Q +RER L FR G++ +
Sbjct: 440 LHTHGTTGLTLIFVETKRMADALSEFLINQRFPATAIHGDRTQRERERALEMFRSGRYPI 499
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVAT VAARGLDIPNV +I+Y+LP D + +VHR GRTGRAG G A F R VR
Sbjct: 500 LVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVR 559
Query: 178 SL 179
L
Sbjct: 560 DL 561
>gi|262164855|ref|ZP_06032593.1| cold-shock DEAD-box protein A [Vibrio mimicus VM223]
gi|262027235|gb|EEY45902.1| cold-shock DEAD-box protein A [Vibrio mimicus VM223]
Length = 643
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 145/254 (57%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP VK++ ++L NP +D+ G+ ++ +A+ + Y + K ++ L+
Sbjct: 184 VLFSATMPPMVKEIVERFLRNPECVDVAGS-NQTVAKVEQQYWV-VKGVEKDEAMARLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTDA-- 236
ER E + P + V ES ++ L S+E F ++L D+
Sbjct: 361 ERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFAELVEKLQASLEIDSTT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAILLKRQQGKRP 434
>gi|323490564|ref|ZP_08095770.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
gi|323395830|gb|EGA88670.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
Length = 506
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 136/248 (54%), Gaps = 6/248 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ K++ P + + E E I+ + + + K LS L+
Sbjct: 179 LLFSATMPDAIRRIAEKFMKTPEIVKI--KSKEMTVENIEQFYVKSVEREKFDFLSRLLN 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V + IVF +TKR DE++ AL +E +HGD+SQ +R L F+ GK +LV
Sbjct: 237 V-QQPELAIVFGRTKRRVDELAKALNIRGYLAEGIHGDLSQAKRMSVLKQFKAGKIDILV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+ T + + +
Sbjct: 296 ATDVAARGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAGKKGVAVTFVTPREMGYLSIV 355
Query: 180 ERDVGCKFEFVSPPVV-EDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEK-GTDAL 237
ER K E + PP E VL + L ++ + A +++E+ D +
Sbjct: 356 ERTTKKKMEALVPPTANEAVLGQKRVAMEQLLEMTEKNNLGDYRDFATQMLEKHDAVDLI 415
Query: 238 AAALAQLS 245
AAAL ++
Sbjct: 416 AAALKTMT 423
>gi|392406780|ref|YP_006443388.1| DNA/RNA helicase [Anaerobaculum mobile DSM 13181]
gi|390619916|gb|AFM21063.1| DNA/RNA helicase, superfamily II [Anaerobaculum mobile DSM 13181]
Length = 496
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 122/200 (61%), Gaps = 8/200 (4%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP V +S+KYL+ PL IDLV ++++ ++Y + +R L+ V
Sbjct: 184 LFSATMPEEVMTISKKYLNEPLCIDLVEDENQHSDIEHEIYTVP-----QRFAFEGLVNV 238
Query: 62 --YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
+ K ++F +TK + E++ L++ + L+GD++Q +R +L F+ G+ ++L
Sbjct: 239 LLWESPTKGLIFCRTKAETMEIAKKLSAKGFKALCLNGDMTQRERSASLGAFKSGQTSLL 298
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLD+P VD ++ Y LP+D ETF+HRSGRTGRAG G +L+ T + R ++
Sbjct: 299 VATNVAARGLDVPGVDYVVQYGLPDDLETFIHRSGRTGRAGAHGKDVLVLTPQETRHIKQ 358
Query: 179 LERDVGCKFEFVSPPVVEDV 198
+ K ++++ P D+
Sbjct: 359 MIGKTKIKAKWLTVPNRNDI 378
>gi|422910192|ref|ZP_16944833.1| cold-shock DEAD box protein A [Vibrio cholerae HE-09]
gi|341633696|gb|EGS58485.1| cold-shock DEAD box protein A [Vibrio cholerae HE-09]
Length = 646
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 145/254 (57%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP VK++ ++L NP +D+ G+ ++ +A+ + Y + K ++ L+
Sbjct: 184 VLFSATMPPMVKEIVERFLRNPECVDVAGS-NQTVAKVEQQYWV-VKGVEKDEAMARLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTDA-- 236
ER E + P + V ES ++ L S+E F ++L D+
Sbjct: 361 ERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASLEIDSTT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAILLKRQQGKRP 434
>gi|258624003|ref|ZP_05718956.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM603]
gi|258583797|gb|EEW08593.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM603]
Length = 663
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 145/254 (57%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP VK++ ++L NP +D+ G+ ++ +A+ + Y + K ++ L+
Sbjct: 204 VLFSATMPPMVKEIVERFLRNPECVDVAGS-NQTVAKVEQQYWV-VKGVEKDEAMARLLE 261
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LV
Sbjct: 262 T-EETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 320
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 321 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 380
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP-ESVEFFTPTAQRLIEEKGTDA-- 236
ER E + P + V ES ++ L S+E F ++L D+
Sbjct: 381 ERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFAELVEKLQASLEIDSTT 440
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 441 LAAILLKRQQGKRP 454
>gi|227891791|ref|ZP_04009596.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
gi|227866356|gb|EEJ73777.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
Length = 499
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 141/258 (54%), Gaps = 13/258 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP + K+ K++ NP + + E + + Y + T K I++ LI
Sbjct: 186 LLFSATMPKEILKIGEKFMVNPQIVKIKAK--ELTTDLVDQYFVKTKEFEKFDIMTRLID 243
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTVLV 119
V A TIVF +TKR DE+S L + + A +HGD++Q +R L F+ G +LV
Sbjct: 244 VQAPE-LTIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILV 302
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++P DPE++VHR GRTGRAG GT++ T ++ +R +
Sbjct: 303 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRVI 362
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH----PESVEFFTPTAQRLIEEKGTD 235
E+ + + + PP + E+ QV + L+ + E + AQ L+E+ D
Sbjct: 363 EKLTKKRMDPLKPPTQD---EAFIGQVSSALDDIKDLIADTDTERYEAQAQALLEQ--YD 417
Query: 236 ALAAALAQLSGFSRPPSS 253
A+ A L+ ++ +S
Sbjct: 418 AVEVVAAFLNNMTKKDAS 435
>gi|421765661|ref|ZP_16202442.1| Cold-shock DEAD-box protein A [Lactococcus garvieae DCC43]
gi|407625746|gb|EKF52434.1| Cold-shock DEAD-box protein A [Lactococcus garvieae DCC43]
Length = 543
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 136/249 (54%), Gaps = 9/249 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +KK+ K++ NP +I + E A+ I Y + + K IL+ L+
Sbjct: 178 LLFSATMPNDIKKIGVKFMKNPEHIKIAAK--EMTADRIDQYYVKSKEFEKFDILTRLLD 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
V + IVF +TKR DE++ L +E +HGD+ Q++R R L F+ G +LV
Sbjct: 236 V-ERPELAIVFGRTKRRVDEITRGLKLRGYRAEGIHGDLDQNKRLRVLRDFKGGHLDILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++ D E++VHR GRTGRAGK G ++ + ++ +R++
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAI 354
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-----GVHPESVEFFTPTAQRLIEEKGT 234
E+ + + + PP ED ++S + + G + F A++L+ E
Sbjct: 355 EKLTKKEMKSLRPPTKEDAYQASLSVAMDEIKRDLQEGSLKGKLTKFDADAEQLMAEYDV 414
Query: 235 DALAAALAQ 243
L A L Q
Sbjct: 415 KELVAMLIQ 423
>gi|385809721|ref|YP_005846117.1| Superfamily II DNA/RNA helicase [Ignavibacterium album JCM 16511]
gi|383801769|gb|AFH48849.1| Superfamily II DNA/RNA helicase [Ignavibacterium album JCM 16511]
Length = 567
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 118/194 (60%), Gaps = 4/194 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATM S ++ ++ K++ P+ I +G ++ AE IK + A + L ++
Sbjct: 182 LLFSATMSSEIRSIANKFMFEPVEIT-IGKKNVG-AENIKHICYTVNAKDRYLTLKRIVD 239
Query: 61 VYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y + I+F +TKR+ +V+ L L +EALHGD+SQ QRE +N FRQ +L+
Sbjct: 240 YYPEIY-GIIFCRTKRETQDVADLLLKDGYNAEALHGDLSQAQRETVMNKFRQRNIQLLI 298
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ + +I+Y LP++ E + HRSGRTGRAGK GT+I++ ++ +R++
Sbjct: 299 ATDVAARGLDVDGLTHVINYNLPDELEIYTHRSGRTGRAGKTGTSIVITNLKEKSKLRTI 358
Query: 180 ERDVGCKFEFVSPP 193
E KFE P
Sbjct: 359 ENQTNKKFEHHKVP 372
>gi|403717110|ref|ZP_10942499.1| putative ATP-dependent RNA helicase, partial [Kineosphaera limosa
NBRC 100340]
gi|403209372|dbj|GAB97182.1| putative ATP-dependent RNA helicase, partial [Kineosphaera limosa
NBRC 100340]
Length = 479
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 109/172 (63%), Gaps = 6/172 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGN--QDEKLAEGIKLYAISTTATSKRTILSDL 58
MLFSATMP V L+R+Y+ P +I V + D + I+ + A K +LS +
Sbjct: 220 MLFSATMPGAVVALARRYMTQPTHIRAVSDAGDDRQTVAAIEQFVYRAHAMDKVELLSRV 279
Query: 59 ITVYAKG-GKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFT 116
+ AKG G TI+F++TKR A +V+ L A+ A+HGD+ Q RE+ L FR GK
Sbjct: 280 LQ--AKGRGLTIIFSRTKRTAAKVADELVDRGFAAAAIHGDLGQGAREQALRAFRNGKVD 337
Query: 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 168
+LVATDVAARG+D+PNV +++Y+ P D +T++HR+GRTGRAG G AI +
Sbjct: 338 ILVATDVAARGIDVPNVTHVVNYQCPEDEKTYLHRTGRTGRAGLTGVAITLV 389
>gi|377809005|ref|YP_005004226.1| DEAD/DEAH box helicase [Pediococcus claussenii ATCC BAA-344]
gi|361055746|gb|AEV94550.1| DEAD/DEAH box helicase family protein [Pediococcus claussenii ATCC
BAA-344]
Length = 518
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 133/245 (54%), Gaps = 5/245 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +KK+ K++ +P + + E A+ + Y + + K IL+ ++
Sbjct: 178 LLFSATMPQAIKKIGVKFMHDPKQVTV--KSKELTADLVDQYYVRSKEFEKFDILTRVLD 235
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHGDISQHQRERTLNGFRQGKFTVLV 119
V A ++F +TKR DEVS L + + A +HGD++Q +R L+ FR G +LV
Sbjct: 236 VQAPK-LAVIFGRTKRRVDEVSKGLVARGYNAAGIHGDLTQQRRMSILHQFRNGDLDILV 294
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + +Y++ DPE++VHR GRTGRAG GT++ T+ + +R +
Sbjct: 295 ATDVAARGLDITGVTHVYNYDITQDPESYVHRIGRTGRAGAHGTSVTFVTNWEMDYLRDI 354
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER + + PP +D A + V V ++ A L+EE LA
Sbjct: 355 ERLTKKRLLPLKPPTEQDAFAGRAAAAEDNIKDLVKHTDVTKYSEQADHLLEEYDAKTLA 414
Query: 239 AALAQ 243
AAL +
Sbjct: 415 AALLK 419
>gi|345883213|ref|ZP_08834660.1| hypothetical protein HMPREF0666_00836 [Prevotella sp. C561]
gi|345044002|gb|EGW48051.1| hypothetical protein HMPREF0666_00836 [Prevotella sp. C561]
Length = 640
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 131/214 (61%), Gaps = 7/214 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATM V+++++ YL + I +VG+++E AE + A K L L+
Sbjct: 181 LLFSATMSREVERVAKGYLHDYKEI-VVGSRNEG-AESVNHIYYMVNARDKYLALKRLVD 238
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y K IVF +TK + E++ L +EALHGD+SQ QR+ T+ FR +LV
Sbjct: 239 FYPKI-YAIVFCRTKLETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHLTQILV 297
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLD+ ++ +I+Y LP+D E + HRSGRTGRAGK+GT+I + S ++ VR++
Sbjct: 298 ATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKYKVRNI 357
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV 213
ER++G F + P E++ + +Q+ T++ +
Sbjct: 358 EREIGKDFVDGTLPSPEEICK---KQLFKTMDDI 388
>gi|323491514|ref|ZP_08096694.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546]
gi|323314239|gb|EGA67323.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546]
Length = 643
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 140/254 (55%), Gaps = 7/254 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +K + ++L +P ID+ G + ++ K +S L+
Sbjct: 184 VLFSATMPPMLKSIVERFLRDPETIDVAGKN--HTVDKVEQQFWVVKGVEKDEAMSRLLE 241
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ +IVF +T++D + ++ L + + ALHGDI Q RERT++ +QG +LV
Sbjct: 242 T-EETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILV 300
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDV ARGLD+P + + +Y++P D E+++HR GRTGRAG++G AIL+ ++Q R +R++
Sbjct: 301 ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTI 360
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDA-- 236
ER E + P + V E+ ++ A L +++E F +L E DA
Sbjct: 361 ERVTKSSMEEIQLPHRDKVAEARLAKLGAELETEKEHKALEKFAELVDKLQESLELDAAT 420
Query: 237 LAAALAQLSGFSRP 250
LAA L + RP
Sbjct: 421 LAAILLKRQQGKRP 434
>gi|425733846|ref|ZP_18852166.1| DNA/RNA helicase [Brevibacterium casei S18]
gi|425482286|gb|EKU49443.1| DNA/RNA helicase [Brevibacterium casei S18]
Length = 503
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 107/170 (62%), Gaps = 3/170 (1%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA-EGIKLYAISTTATSKRTILSDLI 59
MLFSATMP V L+R+Y++ P +I N+D L + Y A K +++ L+
Sbjct: 194 MLFSATMPGAVITLARRYMNRPTHIRAHDNEDLSLTGKNTTQYVYRAHAMDKSELVARLL 253
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVL 118
+G +TI+FT+TKR AD+++ L+ A ALHGD+ Q QRE+ L FR G VL
Sbjct: 254 QAEGRG-RTIIFTRTKRTADKLAAELSDRGFAVRALHGDLGQAQREKALKSFRDGTVDVL 312
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 168
VATDVAARG+DI +V +++++ P D +T+VHR GRTGRAG G A+ +
Sbjct: 313 VATDVAARGIDIDDVTHVVNFQSPEDEKTYVHRIGRTGRAGNSGVAVTLV 362
>gi|126651493|ref|ZP_01723697.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905]
gi|126591746|gb|EAZ85842.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905]
Length = 513
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 139/249 (55%), Gaps = 8/249 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP ++K++ ++ +P + + E + I Y + + K +LS L+
Sbjct: 179 LLFSATMPPAIRKIAETFMRDPEIVKIKAK--ELTVDNIDQYFVKSAEREKFDVLSRLLN 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI--IASEALHGDISQHQRERTLNGFRQGKFTVL 118
V+ + I+F +TKR DE++ AL SI +E +HGD+SQ +R L F++ K +L
Sbjct: 237 VH-QPELAIIFGRTKRRVDELAQAL-SIRGYLAEGIHGDLSQAKRISVLRQFKENKIDIL 294
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T + +R
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLRI 354
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESV--EFFTPTAQRLIEEKGTDA 236
+E + + PP ++ L + TL G+ + ++ T ++ L + D
Sbjct: 355 VEETTKKRMTPLRPPTTDEALVGQQRLALDTLEGLIANNNLGDYRTLASEILDNHEAIDV 414
Query: 237 LAAALAQLS 245
+AAAL L+
Sbjct: 415 VAAALRSLT 423
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,383,633,740
Number of Sequences: 23463169
Number of extensions: 321543272
Number of successful extensions: 1657823
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 39516
Number of HSP's successfully gapped in prelim test: 16659
Number of HSP's that attempted gapping in prelim test: 1468435
Number of HSP's gapped (non-prelim): 135689
length of query: 470
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 324
effective length of database: 8,933,572,693
effective search space: 2894477552532
effective search space used: 2894477552532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)