BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012133
(470 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Arabidopsis
thaliana GN=RH3 PE=1 SV=2
Length = 748
Score = 632 bits (1629), Expect = e-180, Method: Compositional matrix adjust.
Identities = 309/364 (84%), Positives = 342/364 (93%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP+WVKKL+RKYLDNPLNIDLVG+QDEKLAEGIKLYAI+TT+TSKRTILSDLIT
Sbjct: 287 MLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLIT 346
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFTQTKRDADEVSLAL++ IA+EALHGDISQHQRERTLN FRQGKFTVLVA
Sbjct: 347 VYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVA 406
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGRAGKEG+AILM TSSQ+RTVRSLE
Sbjct: 407 TDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLE 466
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGC FEF+SPP V D+LESSA+QVVATLNGVHP+S++FF+ TAQ+L EEKGTDALAAA
Sbjct: 467 RDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFFSATAQKLYEEKGTDALAAA 526
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LA LSGFS+PPSSRSL++HE+GWVTLQL RD +RGF+SARSV GFLSD+Y TAADE+G
Sbjct: 527 LAHLSGFSQPPSSRSLLSHEKGWVTLQLIRDPTNARGFLSARSVTGFLSDLYRTAADEVG 586
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KI +IADDR+QGAVFDLPEEIAKELL K +P GN++S ITKLP LQDDGPSSDNYGRFSS
Sbjct: 587 KIFLIADDRIQGAVFDLPEEIAKELLEKDVPEGNSLSMITKLPPLQDDGPSSDNYGRFSS 646
Query: 361 RDRF 364
RDR
Sbjct: 647 RDRM 650
>sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Oryza
sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2
Length = 758
Score = 620 bits (1598), Expect = e-176, Method: Compositional matrix adjust.
Identities = 296/362 (81%), Positives = 333/362 (91%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMP WVKKLSR+YL+NPL IDLVG+QDEKLAEGIKLYAI T+TSKRT+LSDLIT
Sbjct: 287 MLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLIT 346
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
VYAKGGKTIVFT+TKRDADEVSLALT+ IASEALHGDISQHQRERTLNGFRQGKFTVLVA
Sbjct: 347 VYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVA 406
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK GTAILMFT+SQRRTVRSLE
Sbjct: 407 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLE 466
Query: 181 RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 240
RDVGC+F+F+SPP +EDVLESSAE V+ATL GVH ES+++F P A+RL EE G +ALA+A
Sbjct: 467 RDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAERLQEELGPNALASA 526
Query: 241 LAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIG 300
LA LSGFS+PPSSRSLI+HEQGWVTLQLTRD + RGF S RSV GFLSDV AADE+G
Sbjct: 527 LAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRGFFSPRSVTGFLSDVSSAAADEVG 586
Query: 301 KIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGPSSDNYGRFSS 360
KI + AD++VQGAVFDLPEEIA++LL+ ++PPGNTI+K+TKLPALQDDGP++D+YGRFS+
Sbjct: 587 KIFLTADEKVQGAVFDLPEEIARDLLSMELPPGNTITKVTKLPALQDDGPATDSYGRFSN 646
Query: 361 RD 362
D
Sbjct: 647 SD 648
>sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp.
japonica GN=Os07g0143700 PE=2 SV=2
Length = 602
Score = 265 bits (677), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 126/202 (62%), Positives = 161/202 (79%), Gaps = 2/202 (0%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSATMPSW++K++ KYL +P+ IDLVG++D+KL EGI LY+I++ K +IL LI
Sbjct: 264 MLFSATMPSWIRKITSKYLKDPIIIDLVGDEDQKLPEGISLYSIASEHYGKPSILGPLIK 323
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+A GGK IVFTQTKR+AD ++ A+ A +ALHGDISQ+QRERTL+GFR G+F +LVA
Sbjct: 324 EHANGGKCIVFTQTKREADRLAYAMGRSYACQALHGDISQNQRERTLSGFRDGRFNILVA 383
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDL+IHYELPN E FVHRSGRT RAGK+G+AIL++T+ Q R VR +E
Sbjct: 384 TDVAARGLDIPNVDLVIHYELPNTSELFVHRSGRTARAGKKGSAILIYTNDQARAVRIIE 443
Query: 181 RDVGCKFEFVSPPVVEDVLESS 202
+D+GCKF + P +E E+S
Sbjct: 444 QDIGCKFTEL--PKIEVADEAS 463
>sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana
GN=RH53 PE=2 SV=1
Length = 616
Score = 264 bits (674), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 123/196 (62%), Positives = 155/196 (79%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
M+FSATMPSW++ L++KYL+NPL +DLVG+ D+KLA+GI Y+I + + +I+ L+T
Sbjct: 285 MMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVT 344
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+AKGGK IVFTQTKRDAD +S AL EALHGDISQ QRERTL GFR G F +LVA
Sbjct: 345 EHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVA 404
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+PNVDLIIHYELPN+ ETFVHR+GRTGRAGK+G+AIL+++ Q R V+ +E
Sbjct: 405 TDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIE 464
Query: 181 RDVGCKFEFVSPPVVE 196
R+VG +F + VE
Sbjct: 465 REVGSRFTELPSIAVE 480
>sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp.
japonica GN=Os12g0611200 PE=2 SV=1
Length = 628
Score = 260 bits (664), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 118/187 (63%), Positives = 149/187 (79%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
++FSATMP+W+++L++KYL NP+ IDLVG D+KLAEGI LY+I++ +K +L +LI
Sbjct: 278 LMFSATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIK 337
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+AKGGK IVFTQTKRDAD +S + +ALHGDI+Q QRERTL GFR+G F +L+A
Sbjct: 338 EHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFREGHFNILIA 397
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLDIPNVDL+IH+ELPN E FVHRSGRTGRAGK+G AI+M + Q R +R +E
Sbjct: 398 TDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSRAIRMVE 457
Query: 181 RDVGCKF 187
DVGCKF
Sbjct: 458 NDVGCKF 464
>sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana
GN=RH9 PE=2 SV=1
Length = 610
Score = 257 bits (657), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 118/196 (60%), Positives = 153/196 (78%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
M+FSATMPSW++ L++KYL+NPL IDLVG+ D+KLA+GI +Y+I+ + + +I+ L+
Sbjct: 297 MMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVK 356
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120
+ KGGK IVFTQTKRDAD ++ L EALHGDISQ QRERTL GFR G F++LVA
Sbjct: 357 EHGKGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGDISQAQRERTLAGFRDGNFSILVA 416
Query: 121 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180
TDVAARGLD+PNVDL+IHYELPN+ ETFVHR+GRTGRAGK+G+AIL+ Q R V+ +E
Sbjct: 417 TDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIE 476
Query: 181 RDVGCKFEFVSPPVVE 196
++VG +F + VE
Sbjct: 477 KEVGSRFNELPSIAVE 492
>sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp.
japonica GN=Os09g0520700 PE=2 SV=1
Length = 696
Score = 221 bits (564), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 142/356 (39%), Positives = 205/356 (57%), Gaps = 22/356 (6%)
Query: 1 MLFSATMPSWVKKLSRKYLDN-PLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+P WVKKLS ++L + +DLVG++ K + ++ A+ ++ ++ D+I
Sbjct: 304 LLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASVRHLALPCNRAARAQVIPDII 363
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIA-SEALHGDISQHQRERTLNGFRQGKFTVL 118
Y++GG+TI+FT+TK A + L+ +IA S ALHGD++Q QRE L GFR GKF VL
Sbjct: 364 RCYSRGGRTIIFTETKESASD----LSGLIAGSRALHGDVAQAQREVILAGFRSGKFLVL 419
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A+++F + V
Sbjct: 420 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRYKFNVNR 479
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG---TD 235
+ER+ G KFE +S P DV +S+ + ++ V + F A++L+ G D
Sbjct: 480 IERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVSDSVIPVFREQAEQLLNSSGMSAVD 539
Query: 236 ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL-TRDSAFSRGFMSARSVMGFLSDVYPT 294
LA ALA+ G++ RSL++ TL L T S ++ GF V+ L P
Sbjct: 540 LLAKALAKAVGYTD-IKKRSLLSSMDNHTTLLLQTGRSVYAAGF-----VLSTLKRFMPE 593
Query: 295 A--ADEIGKIHIIADDRVQGAVFDLPE-EIAKELLNKQIPPGNTISKITKLPALQD 347
AD G I I AD GAVFD+P E+ + Q T+ ++ +LP LQ+
Sbjct: 594 ERLADVKG-ITITADG--TGAVFDVPSAEVEDYIQGAQNAAMVTVEEVKQLPPLQE 646
>sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 PE=1 SV=3
Length = 851
Score = 218 bits (554), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 151/426 (35%), Positives = 231/426 (54%), Gaps = 46/426 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 444 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVI 503
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK+DA E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 504 RVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVL 563
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + + +
Sbjct: 564 VATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQ 623
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 624 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 683
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN + G+VT+ + M +S + +
Sbjct: 684 AAALAHISGATS-VDQRSLINSQAGFVTM-----------ILRCSIEMPNISYAWKELKE 731
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+ E E+ K ++ T+ P L
Sbjct: 732 QLGE---SIDAKVKGMVFLKGKLGVCFDVRTEAVTEIQEKWHDSRRWQLTVATEQPEL-- 786
Query: 348 DGPSSDNYGRFSSRD------RFSRGGGSRFSRGGARGGAR--------GGGSMDRRGFR 393
+GP GR RD R RGG F G RGG+R GG +R F
Sbjct: 787 EGPPDGYRGRMGQRDGSRGAFRGQRGGSRNFRGQGQRGGSRNFRGQRPGGGNRGQKRSF- 845
Query: 394 SSRSWG 399
S+++G
Sbjct: 846 -SKAFG 850
>sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 PE=1 SV=5
Length = 783
Score = 214 bits (545), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 156/434 (35%), Positives = 235/434 (54%), Gaps = 46/434 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 372 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI 431
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 432 RVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVL 491
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 492 VATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQ 551
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 552 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEAL 611
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN G+VT+ + M +S + +
Sbjct: 612 AAALAHISGATS-VDQRSLINSNVGFVTM-----------ILQCSIEMPNISYAWKELKE 659
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+P E+ K +S T+ P L
Sbjct: 660 QLGE---EIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEKWHDSRRWQLSVATEQPEL-- 714
Query: 348 DGPSSDNYGRFSSRDRFSRG------GGSRF--SRGGARG--GARGGGSMDRRGFRSSRS 397
+GP + YG F + SRG G RF R G+RG G R GG G +S+RS
Sbjct: 715 EGP-REGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRGQRSGG-----GNKSNRS 768
Query: 398 WGSDDEDGFSSSRG 411
+ FS + G
Sbjct: 769 QNKGQKRSFSKAFG 782
>sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=1 SV=1
Length = 737
Score = 214 bits (544), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 210/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 323 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 382
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 383 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 442
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R
Sbjct: 443 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRY 502
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 503 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 562
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 563 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESLEEIQDVSCAWKELNRKLSS---NAVS 618
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+I ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 619 QITRMCLLKGN--MGVCFDVPTTESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 675
>sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus musculus GN=Ddx50 PE=2 SV=1
Length = 734
Score = 213 bits (542), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 135/359 (37%), Positives = 209/359 (58%), Gaps = 11/359 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D++
Sbjct: 320 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 379
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F VL
Sbjct: 380 QVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVL 439
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G + + +R +R
Sbjct: 440 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERGQLRY 499
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DAL
Sbjct: 500 VEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDAL 559
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG S RSLI ++G+VT+ L + + + LS A
Sbjct: 560 AAALAHISGAS-SFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKELNRKLSS---NAVS 615
Query: 298 EIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQD--DGPSSDN 354
+ ++ ++ + G FD+P ++ L + +S KLP +++ DG +S N
Sbjct: 616 HVTRMCLLKGN--MGVCFDVPTSESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSN 672
>sp|Q3B8Q1|DDX21_RAT Nucleolar RNA helicase 2 OS=Rattus norvegicus GN=Ddx21 PE=2 SV=1
Length = 782
Score = 213 bits (542), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 152/431 (35%), Positives = 231/431 (53%), Gaps = 37/431 (8%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D+I
Sbjct: 368 LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVI 427
Query: 60 TVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 118
VY+ G+TI+F +TK+DA E+S +++LHGDI Q QRE TL GFR G F VL
Sbjct: 428 RVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVL 487
Query: 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178
VAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 488 VATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQ 547
Query: 179 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDAL 237
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +AL
Sbjct: 548 VEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAIGHFKQSAEKLIEEKGAVEAL 607
Query: 238 AAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297
AAALA +SG + RSLIN + G+VT+ + M +S + +
Sbjct: 608 AAALAHISGATS-VDQRSLINSQAGFVTM-----------ILRCSVEMPNISYAWKELKE 655
Query: 298 EIGKIHIIADDRVQGAV---------FDLPEEIAKELLNKQIPPGN-TISKITKLPALQD 347
++G+ D +V+G V FD+ E E+ K ++ T+ P L
Sbjct: 656 QLGE---SIDAKVKGMVFLKGKLGVCFDVRTEAVTEIKEKWHDSRRWQLTVATEQPEL-- 710
Query: 348 DGPSSDNYGRFSSRD------RFSRGGGSRFSRGGARGGARG-GGSMDRRGFRSSRSWGS 400
+GP G RD R RGG F G RGG+R G G +S+RS
Sbjct: 711 EGPPEGYRGGRGQRDGSRGSFRGQRGGSRNFRGQGQRGGSRNFRGQRPGGGNKSNRSPNK 770
Query: 401 DDEDGFSSSRG 411
+ FS + G
Sbjct: 771 GQKRSFSKAFG 781
>sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7
PE=2 SV=1
Length = 685
Score = 212 bits (540), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 133/352 (37%), Positives = 202/352 (57%), Gaps = 15/352 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+PSWVK++S ++L + +DLV +Q K + ++ I +A+++ ++ D+I
Sbjct: 296 LLFSATLPSWVKQISTRFLKSAKKTVDLVSDQKMKASISVRHIVIPCSASARPDLIPDII 355
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
Y GG++I+FT+TK A +++ LT + LHGDI Q QRE TL GFR GKF LV
Sbjct: 356 RCYGSGGRSIIFTETKESASQLAGLLT---GARPLHGDIQQTQREVTLKGFRTGKFMTLV 412
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
AT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A++++ +R +V +
Sbjct: 413 ATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAGNTGVAVMLY-DPKRSSVTKI 471
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG---TDA 236
ER+ G KFE +S P DV ++ + A + + + F A+ L+ G D
Sbjct: 472 ERESGVKFEHLSAPQPVDVAKAVGIEAAAAILQISDSVIPAFKDAAEELLSTSGLSAVDI 531
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAA 296
L+ ALA+ +G+S RSL+ +G+VTL L F + + FL T A
Sbjct: 532 LSKALAKAAGYSD-IKERSLLTGMEGYVTLLLDAGRPFYGQSFAYTVLKRFLP---ATKA 587
Query: 297 DEIGKIHIIADDRVQGAVFDLP-EEIAKELLNKQIPPGNTISKITKLPALQD 347
D I + + AD GAVFD+P +++ L+ + G + + LP L++
Sbjct: 588 DSIMGVALTADK--SGAVFDVPVDDLETFLVGAENAAGVNLDVVKALPPLEE 637
>sp|Q39189|RH7_ARATH DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis thaliana
GN=RH7 PE=1 SV=2
Length = 671
Score = 205 bits (522), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 135/357 (37%), Positives = 198/357 (55%), Gaps = 18/357 (5%)
Query: 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 59
+LFSAT+PSWVK +S ++L + IDLVGN K + ++ AI + ++ D+I
Sbjct: 285 LLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIPDII 344
Query: 60 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ Y+ GG+TI+F +TK E+S L S ALHG+I Q QRE TL GFR GKF LV
Sbjct: 345 SCYSSGGQTIIFAETKVQVSELSGLLD---GSRALHGEIPQSQREVTLAGFRNGKFATLV 401
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
AT+VAARGLDI +V LII E P + E ++HRSGRTGRAG G A+ ++ S++ +V +
Sbjct: 402 ATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTLY-DSRKSSVSRI 460
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA--- 236
E++ G KFE ++ P +++ S + + V V F A+ L+E G A
Sbjct: 461 EKEAGIKFEHLAAPQPDEIARSGGMEAAEKVKQVCDSVVPAFLEAAKELLETSGLSAEVL 520
Query: 237 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYP-TA 295
LA ALA+ +GF+ RSL+ + +VTL L + S V G L V P
Sbjct: 521 LAKALAKTAGFTE-IKKRSLLTSMENYVTLHLEA----GKPIYSPSFVYGLLRRVLPDDK 575
Query: 296 ADEIGKIHIIADDRVQGAVFDLPE-EIAKELLNKQIPPGNTISKITK-LPALQDDGP 350
+ I + + AD GAVFD+ + ++ + Q G+ ++ K +P LQ+ P
Sbjct: 576 VEMIEGLSLTADK--TGAVFDVKQSDLDLFIAGAQKSAGSMSLEVVKVMPKLQEREP 630
>sp|Q5L3G9|CSHA_GEOKA DEAD-box ATP-dependent RNA helicase CshA OS=Geobacillus
kaustophilus (strain HTA426) GN=cshA PE=3 SV=1
Length = 467
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 143/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ ++++ P + + E I+ Y + K IL+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMNEPELVKV--KAKEMTVPNIQQYYLEVHEKKKFDILTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ A IVF +TKR DE++ AL A+E +HGD+SQ +R L F++G +LV
Sbjct: 237 IQAPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T + + +
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVV-ATLNGVHPESVEFFTPTAQRLIEEKGTDALA 238
ER K E + PP +++ LE + LN V E++ F+ A+ L+EE D++
Sbjct: 356 ERTTKRKMERMKPPTLDEALEGQQRIAIEKLLNVVETENLSFYKRAAEELLEEH--DSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L +R P +
Sbjct: 414 IVAACLKMLTREPDT 428
>sp|Q73EU1|CSHA_BACC1 DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ATCC 10987) GN=cshA PE=3 SV=1
Length = 525
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 146/255 (57%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L N + E++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQNTIENENLAYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>sp|Q6HPE6|CSHA_BACHK DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis
subsp. konkukian (strain 97-27) GN=cshA PE=3 SV=1
Length = 528
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>sp|Q81VG0|CSHA_BACAN DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus anthracis
GN=cshA PE=3 SV=1
Length = 528
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>sp|A0R8U6|CSHA_BACAH DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis
(strain Al Hakam) GN=cshA PE=3 SV=1
Length = 528
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>sp|Q63GX5|CSHA_BACCZ DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ZK / E33L) GN=cshA PE=3 SV=1
Length = 528
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>sp|Q81IT9|CSHA_BACCR DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ATCC 14579 / DSM 31) GN=cshA PE=3 SV=2
Length = 533
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 145/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP +++++ +++ P +I + E I+ + + K +L+ L+
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMPNIQQFYLEVQEKKKFDVLTRLLD 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE+S AL A+E +HGD++Q +R L F++G VLV
Sbjct: 237 IQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK+G A+L T + ++++
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHPESVEFFTPTAQRLIEEKGTDALA 238
ER K + + P +++ LE + L + E++ ++ A+ ++EE D++
Sbjct: 356 ERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEE--NDSVT 413
Query: 239 AALAQLSGFSRPPSS 253
A L ++ P +
Sbjct: 414 VVAAALKMMTKEPDT 428
>sp|Q65N62|CSHA_BACLD DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus licheniformis
(strain DSM 13 / ATCC 14580) GN=cshA PE=3 SV=1
Length = 487
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 144/255 (56%), Gaps = 7/255 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ NP ++ + E I+ + + K L+ L+
Sbjct: 180 LLFSATMPAPIKRIAERFMTNPEHVKVKAK--EMTVSNIQQFYLEVHERKKFDTLTRLLD 237
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL +E +HGD++Q +R L F+QG VLV
Sbjct: 238 IQSPE-LAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLV 296
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAI 356
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ +E + V + + E ++ F+ A L+E+ D++
Sbjct: 357 EQTTKRKMDRMKAPTLDEAIEGQQQVTVDRIRTIIEENNLNFYMTAAAELLEDH--DSVT 414
Query: 239 AALAQLSGFSRPPSS 253
A + ++ P +
Sbjct: 415 VVAAAIKMMTKEPDN 429
>sp|P96614|CSHA_BACSU DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus subtilis
(strain 168) GN=cshA PE=1 SV=2
Length = 494
Score = 143 bits (360), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 142/253 (56%), Gaps = 7/253 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
+LFSATMP+ +K+++ +++ P ++ + E I+ + + K L+ L+
Sbjct: 180 LLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVSNIQQFYLEVQERKKFDTLTRLLD 237
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
+ + IVF +TKR DE++ AL A+E +HGD++Q +R L F++G VLV
Sbjct: 238 IQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 296
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARGLDI V + ++++P DPE++VHR GRTGRAGK G A+ T ++ +R++
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 356
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDALA 238
E+ K + + P +++ LE + V L + ++ F+ A L+E+ DA+
Sbjct: 357 EQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLEDH--DAVT 414
Query: 239 AALAQLSGFSRPP 251
A + ++ P
Sbjct: 415 VVAAAIKMATKEP 427
>sp|Q4WP13|DED1_ASPFU ATP-dependent RNA helicase ded1 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=ded1
PE=3 SV=1
Length = 674
Score = 139 bits (349), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 110/182 (60%), Gaps = 7/182 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNP--LNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
++FSAT P ++ L+R +L + L++ VG+ E + + ++ KR++L D+
Sbjct: 388 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEY----VEDHDKRSVLLDI 443
Query: 59 ITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
+ + G T++F +TKR AD +S L + A+HGD +Q +RER L FR G+ +
Sbjct: 444 LHTHGTSGLTLIFVETKRMADALSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPI 503
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVAT VAARGLDIPNV +I+Y+LP D + +VHR GRTGRAG G A F S R VR
Sbjct: 504 LVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRSNRGVVR 563
Query: 178 SL 179
L
Sbjct: 564 EL 565
>sp|C8V8H4|DED1_EMENI ATP-dependent RNA helicase ded1 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ded1
PE=3 SV=1
Length = 668
Score = 138 bits (348), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 110/182 (60%), Gaps = 7/182 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNP--LNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
++FSAT P ++ L+R +L + L++ VG+ E + + ++ KR++L D+
Sbjct: 384 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEY----VEDHDKRSVLLDI 439
Query: 59 ITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
+ + G T++F +TKR AD +S + + A+HGD +Q +RER L FR G++ +
Sbjct: 440 LHTHGTTGLTLIFVETKRMADALSEFLINQRFPATAIHGDRTQRERERALEMFRSGRYPI 499
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVAT VAARGLDIPNV +I+Y+LP D + +VHR GRTGRAG G A F R VR
Sbjct: 500 LVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVR 559
Query: 178 SL 179
L
Sbjct: 560 DL 561
>sp|A1CXK7|DED1_NEOFI ATP-dependent RNA helicase ded1 OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ded1
PE=3 SV=1
Length = 676
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 109/182 (59%), Gaps = 7/182 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNP--LNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
++FSAT P ++ L+R +L + L++ VG+ E + + ++ KR++L D+
Sbjct: 390 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEY----VEDHDKRSVLLDI 445
Query: 59 ITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
+ + G T++F +TKR AD +S L + A+HGD +Q +RER L FR G+ +
Sbjct: 446 LHTHGTSGLTLIFVETKRMADALSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPI 505
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVAT VAARGLDIPNV +I+Y+LP D + +VHR GRTGRAG G A F R VR
Sbjct: 506 LVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVR 565
Query: 178 SL 179
L
Sbjct: 566 EL 567
>sp|Q2UGK3|DED1_ASPOR ATP-dependent RNA helicase ded1 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=ded1 PE=3 SV=1
Length = 675
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 109/182 (59%), Gaps = 7/182 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNP--LNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
++FSAT P ++ L+R +L + L++ VG+ E + + ++ KR++L D+
Sbjct: 386 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEY----VEDHDKRSVLLDI 441
Query: 59 ITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
+ + G T++F +TKR AD +S L + A+HGD +Q +RER L FR G+ +
Sbjct: 442 LHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPI 501
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVAT VAARGLDIPNV +I+Y+LP D + +VHR GRTGRAG G A F R VR
Sbjct: 502 LVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVR 561
Query: 178 SL 179
L
Sbjct: 562 DL 563
>sp|A2QI25|DED1_ASPNC ATP-dependent RNA helicase ded1 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=ded1 PE=3 SV=1
Length = 678
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 109/182 (59%), Gaps = 7/182 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNP--LNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
++FSAT P ++ L+R +L + L++ VG+ E + + ++ KR++L D+
Sbjct: 387 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEY----VEDHDKRSVLLDI 442
Query: 59 ITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
+ + G T++F +TKR AD +S L + A+HGD +Q +RER L FR G+ +
Sbjct: 443 LHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPI 502
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVAT VAARGLDIPNV +I+Y+LP D + +VHR GRTGRAG G A F R VR
Sbjct: 503 LVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVR 562
Query: 178 SL 179
L
Sbjct: 563 DL 564
>sp|Q4P733|DED1_USTMA ATP-dependent RNA helicase DED1 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=DED1 PE=3 SV=1
Length = 672
Score = 136 bits (342), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 111/182 (60%), Gaps = 7/182 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNP--LNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
++FSAT P ++ L++ +L L++ VG+ E + + I+ KR++L D+
Sbjct: 388 LMFSATFPRDIQLLAKDFLKEYVFLSVGRVGSTSENITQKIEY----VEDDDKRSVLLDV 443
Query: 59 ITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
+ GG T++F +TKR AD +S L S I + ++HGD +Q +RER L FR GK +
Sbjct: 444 LASMPSGGLTLIFVETKRMADMLSDFLLRSKIGATSIHGDRTQRERERALELFRSGKTPI 503
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
+VAT VAARGLDIPNV +++Y+LP+D + +VHR GRTGRAG G A F + VR
Sbjct: 504 MVATAVAARGLDIPNVTHVVNYDLPSDVDDYVHRIGRTGRAGNVGHATAFFNRGNKNIVR 563
Query: 178 SL 179
L
Sbjct: 564 DL 565
>sp|Q9P6U9|DED1_NEUCR ATP-dependent RNA helicase ded-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=ded-1 PE=3 SV=1
Length = 688
Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 111/182 (60%), Gaps = 8/182 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNP--LNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
++FSAT P ++ L+R +L + L++ VG+ E + + ++ KR++L D+
Sbjct: 392 LMFSATFPRDIQILARDFLKDYIFLSVGRVGSTSENITQKVEY----VEDIDKRSVLLDI 447
Query: 59 ITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
+ +A GG T++F +TKR AD +S + + ++HGD +Q +RER L FR G+ +
Sbjct: 448 LHTHA-GGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPI 506
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVAT VAARGLDIPNV +I+Y+LP D + +VHR GRTGRAG G A F R VR
Sbjct: 507 LVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVR 566
Query: 178 SL 179
L
Sbjct: 567 EL 568
>sp|Q2HBE7|DED1_CHAGB ATP-dependent RNA helicase DED1 OS=Chaetomium globosum (strain ATCC
6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)
GN=DED1 PE=3 SV=1
Length = 688
Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 112/182 (61%), Gaps = 8/182 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNP--LNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
++FSAT P ++ L++ +L++ L++ VG+ E + + ++ KR++L D+
Sbjct: 395 LMFSATFPRDIQMLAQDFLNDYVFLSVGRVGSTSENITQKVEY----VEDVDKRSVLLDI 450
Query: 59 ITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
+ +A GG T++F +TKR AD +S + + ++HGD +Q +RER L FR GK +
Sbjct: 451 LHTHA-GGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALELFRNGKCPI 509
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVAT VAARGLDIPNV +I+Y+LP D + +VHR GRTGRAG G A F R VR
Sbjct: 510 LVATAVAARGLDIPNVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIATAFFNRGNRGIVR 569
Query: 178 SL 179
L
Sbjct: 570 EL 571
>sp|A1CH78|DED1_ASPCL ATP-dependent RNA helicase ded1 OS=Aspergillus clavatus (strain
ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=ded1 PE=3 SV=1
Length = 681
Score = 135 bits (340), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 108/182 (59%), Gaps = 7/182 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNP--LNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
++FSAT P ++ L+R +L + L++ VG+ E + + ++ KR++L D+
Sbjct: 389 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEY----VEDVDKRSVLLDI 444
Query: 59 ITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
+ + G T++F +TKR AD +S + + A+HGD +Q +RER L FR + +
Sbjct: 445 LHTHGTSGLTLIFVETKRMADALSDFLINQRFPATAIHGDRTQRERERALEMFRSARCPI 504
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVAT VAARGLDIPNV +I+Y+LP D + +VHR GRTGRAG G A F R VR
Sbjct: 505 LVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVR 564
Query: 178 SL 179
L
Sbjct: 565 EL 566
>sp|P42305|DBPA_BACSU ATP-dependent RNA helicase DbpA OS=Bacillus subtilis (strain 168)
GN=dbpA PE=1 SV=2
Length = 479
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 128/218 (58%), Gaps = 6/218 (2%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 60
MLFSAT+P ++KLSR+Y+ NP +I++ I+ I +K ++L D++
Sbjct: 179 MLFSATLPQDIEKLSRQYMQNPEHIEVKAAG--LTTRNIEHAVIQVREENKFSLLKDVLM 236
Query: 61 VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLV 119
I+F +TK ++++ L + + +HG + Q R +N F++G++ LV
Sbjct: 237 T-ENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLV 295
Query: 120 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179
ATDVAARG+DI N+ L+I+Y+LP + E++VHR+GRTGRAG +G AI T+ ++R + +
Sbjct: 296 ATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADI 355
Query: 180 ERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 217
E +G + + + P E+V E +A LN PES
Sbjct: 356 EEYIGFEIQKIEAPSQEEVARKKPE-FLAKLND-RPES 391
>sp|Q2YUH3|Y1965_STAAB Probable DEAD-box ATP-dependent RNA helicase SAB1965c
OS=Staphylococcus aureus (strain bovine RF122 / ET3-1)
GN=SAB1965c PE=3 SV=1
Length = 506
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 134/247 (54%), Gaps = 9/247 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ--DEKLAEGIKLYAISTTATSKRTILSDL 58
MLFSATMP ++ L ++++ +P I + N+ D ++ E Y I K ++
Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTI-VKELEKFDTFTNF 234
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
+ V+ + IVF +TKR DE++ AL S +E LHGDI+Q +R L F+ + +
Sbjct: 235 LDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 293
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARGLDI V + ++++P D E++ HR GRTGRAGKEG A+ + +R
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDA 236
+E G K + PP ++VL++ + + + N + ES + L+ E
Sbjct: 354 QIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVD 413
Query: 237 LAAALAQ 243
L AAL Q
Sbjct: 414 LVAALLQ 420
>sp|A7TKR8|DED1_VANPO ATP-dependent RNA helicase DED1 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=DED1 PE=3 SV=1
Length = 650
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 121/205 (59%), Gaps = 9/205 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNP--LNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
++FSAT P ++ L+R +L + L++ VG+ E + + I LY K++ L DL
Sbjct: 356 LMFSATFPDDIQHLARDFLSDYIFLSVGKVGSTSENITQRI-LYV---EDMDKKSTLLDL 411
Query: 59 ITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
++ + G T++F +TKR ADE++ + + A+HGD +Q +RER L F+ G +
Sbjct: 412 LSA-SNDGLTLIFVETKRMADELTDFLIMQDFRATAIHGDRTQSERERALAAFKNGNANL 470
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVAT VAARGLDIPNV +++Y+LP+D + +VHR GRTGRAG G A F R V+
Sbjct: 471 LVATAVAARGLDIPNVTHVVNYDLPSDIDDYVHRIGRTGRAGNTGVATAFFNRGNRNIVK 530
Query: 178 SLERDVGCKFEFVSPPVVEDVLESS 202
+ + + + PP + DV+ S
Sbjct: 531 GMYELLAEANQEI-PPFLNDVMRES 554
>sp|Q0CLJ6|DED1_ASPTN ATP-dependent RNA helicase ded1 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=ded1 PE=3 SV=1
Length = 674
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 108/182 (59%), Gaps = 7/182 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNP--LNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
++FSAT P ++ L+R +L + L++ VG+ E + + ++ KR++L D+
Sbjct: 386 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEY----VEDHDKRSVLLDI 441
Query: 59 ITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
+ + G T++F +TKR AD +S L + A+HGD +Q +RER L FR G+ +
Sbjct: 442 LHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPI 501
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVAT VAA GLDIPNV +I+Y+LP D + +VHR GRTGRAG G A F R VR
Sbjct: 502 LVATAVAASGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVR 561
Query: 178 SL 179
L
Sbjct: 562 DL 563
>sp|Q6GEZ3|Y2168_STAAR Probable DEAD-box ATP-dependent RNA helicase SAR2168
OS=Staphylococcus aureus (strain MRSA252) GN=SAR2168
PE=3 SV=1
Length = 506
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 134/247 (54%), Gaps = 9/247 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ--DEKLAEGIKLYAISTTATSKRTILSDL 58
MLFSATMP ++ L ++++ +P I + N+ D ++ E Y I K ++
Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTI-VKELEKFDTFTNF 234
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
+ V+ + IVF +TKR DE++ AL S +E LHGDI+Q +R L F+ + +
Sbjct: 235 LDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 293
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARGLDI V + ++++P D E++ HR GRTGRAGKEG A+ + +R
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDA 236
+E G K + PP ++VL++ + + + N + ES + L+ E
Sbjct: 354 QIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVD 413
Query: 237 LAAALAQ 243
L AAL Q
Sbjct: 414 LVAALLQ 420
>sp|Q2FWH5|Y2316_STAA8 Probable DEAD-box ATP-dependent RNA helicase SAOUHSC_02316
OS=Staphylococcus aureus (strain NCTC 8325)
GN=SAOUHSC_02316 PE=3 SV=1
Length = 506
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 134/247 (54%), Gaps = 9/247 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ--DEKLAEGIKLYAISTTATSKRTILSDL 58
MLFSATMP ++ L ++++ +P I + N+ D ++ E Y I K ++
Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTI-VKELEKFDTFTNF 234
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
+ V+ + IVF +TKR DE++ AL S +E LHGDI+Q +R L F+ + +
Sbjct: 235 LDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 293
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARGLDI V + ++++P D E++ HR GRTGRAGKEG A+ + +R
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDA 236
+E G K + PP ++VL++ + + + N + ES + L+ E
Sbjct: 354 QIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVD 413
Query: 237 LAAALAQ 243
L AAL Q
Sbjct: 414 LVAALLQ 420
>sp|Q99SH6|Y2081_STAAM Probable DEAD-box ATP-dependent RNA helicase SAV2081
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=SAV2081 PE=3 SV=1
Length = 506
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 134/247 (54%), Gaps = 9/247 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ--DEKLAEGIKLYAISTTATSKRTILSDL 58
MLFSATMP ++ L ++++ +P I + N+ D ++ E Y I K ++
Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTI-VKELEKFDTFTNF 234
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
+ V+ + IVF +TKR DE++ AL S +E LHGDI+Q +R L F+ + +
Sbjct: 235 LDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 293
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARGLDI V + ++++P D E++ HR GRTGRAGKEG A+ + +R
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDA 236
+E G K + PP ++VL++ + + + N + ES + L+ E
Sbjct: 354 QIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVD 413
Query: 237 LAAALAQ 243
L AAL Q
Sbjct: 414 LVAALLQ 420
>sp|Q5HEB9|Y2072_STAAC Probable DEAD-box ATP-dependent RNA helicase SACOL2072
OS=Staphylococcus aureus (strain COL) GN=SACOL2072 PE=3
SV=1
Length = 506
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 134/247 (54%), Gaps = 9/247 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ--DEKLAEGIKLYAISTTATSKRTILSDL 58
MLFSATMP ++ L ++++ +P I + N+ D ++ E Y I K ++
Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTI-VKELEKFDTFTNF 234
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
+ V+ + IVF +TKR DE++ AL S +E LHGDI+Q +R L F+ + +
Sbjct: 235 LDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 293
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARGLDI V + ++++P D E++ HR GRTGRAGKEG A+ + +R
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDA 236
+E G K + PP ++VL++ + + + N + ES + L+ E
Sbjct: 354 QIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVD 413
Query: 237 LAAALAQ 243
L AAL Q
Sbjct: 414 LVAALLQ 420
>sp|Q2FF45|Y2037_STAA3 Probable DEAD-box ATP-dependent RNA helicase SAUSA300_2037
OS=Staphylococcus aureus (strain USA300)
GN=SAUSA300_2037 PE=3 SV=1
Length = 506
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 134/247 (54%), Gaps = 9/247 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ--DEKLAEGIKLYAISTTATSKRTILSDL 58
MLFSATMP ++ L ++++ +P I + N+ D ++ E Y I K ++
Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTI-VKELEKFDTFTNF 234
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
+ V+ + IVF +TKR DE++ AL S +E LHGDI+Q +R L F+ + +
Sbjct: 235 LDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 293
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARGLDI V + ++++P D E++ HR GRTGRAGKEG A+ + +R
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDA 236
+E G K + PP ++VL++ + + + N + ES + L+ E
Sbjct: 354 QIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVD 413
Query: 237 LAAALAQ 243
L AAL Q
Sbjct: 414 LVAALLQ 420
>sp|Q7A0D2|Y2004_STAAW Probable DEAD-box ATP-dependent RNA helicase MW2004
OS=Staphylococcus aureus (strain MW2) GN=MW2004 PE=3
SV=1
Length = 506
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 134/247 (54%), Gaps = 9/247 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ--DEKLAEGIKLYAISTTATSKRTILSDL 58
MLFSATMP ++ L ++++ +P I + N+ D ++ E Y I K ++
Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTI-VKELEKFDTFTNF 234
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
+ V+ + IVF +TKR DE++ AL S +E LHGDI+Q +R L F+ + +
Sbjct: 235 LDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 293
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARGLDI V + ++++P D E++ HR GRTGRAGKEG A+ + +R
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDA 236
+E G K + PP ++VL++ + + + N + ES + L+ E
Sbjct: 354 QIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVD 413
Query: 237 LAAALAQ 243
L AAL Q
Sbjct: 414 LVAALLQ 420
>sp|Q6G7M9|Y1985_STAAS Probable DEAD-box ATP-dependent RNA helicase SAS1985
OS=Staphylococcus aureus (strain MSSA476) GN=SAS1985
PE=3 SV=1
Length = 506
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 134/247 (54%), Gaps = 9/247 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ--DEKLAEGIKLYAISTTATSKRTILSDL 58
MLFSATMP ++ L ++++ +P I + N+ D ++ E Y I K ++
Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTI-VKELEKFDTFTNF 234
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
+ V+ + IVF +TKR DE++ AL S +E LHGDI+Q +R L F+ + +
Sbjct: 235 LDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 293
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARGLDI V + ++++P D E++ HR GRTGRAGKEG A+ + +R
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDA 236
+E G K + PP ++VL++ + + + N + ES + L+ E
Sbjct: 354 QIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVD 413
Query: 237 LAAALAQ 243
L AAL Q
Sbjct: 414 LVAALLQ 420
>sp|Q7A4G0|Y1885_STAAN Probable DEAD-box ATP-dependent RNA helicase SA1885
OS=Staphylococcus aureus (strain N315) GN=SA1885 PE=1
SV=1
Length = 506
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 134/247 (54%), Gaps = 9/247 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ--DEKLAEGIKLYAISTTATSKRTILSDL 58
MLFSATMP ++ L ++++ +P I + N+ D ++ E Y I K ++
Sbjct: 179 MLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTI-VKELEKFDTFTNF 234
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
+ V+ + IVF +TKR DE++ AL S +E LHGDI+Q +R L F+ + +
Sbjct: 235 LDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 293
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARGLDI V + ++++P D E++ HR GRTGRAGKEG A+ + +R
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDA 236
+E G K + PP ++VL++ + + + N + ES + L+ E
Sbjct: 354 QIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVD 413
Query: 237 LAAALAQ 243
L AAL Q
Sbjct: 414 LVAALLQ 420
>sp|P57453|DEAD_BUCAI Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=deaD PE=3 SV=1
Length = 601
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 140/257 (54%), Gaps = 16/257 (6%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGN----QDEKLAEGIKLYAISTTATSKRTILSD 57
LFSATMP ++++S++++ NP I + N D K + + +Y T A + D
Sbjct: 185 LFSATMPEAIRRISKRFMRNPKEIKIQSNITTRPDIKQSYWM-VYGRKTDALIRFLEAED 243
Query: 58 LITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFT 116
TI+F +TK EVS AL + S AL+GD++Q RE+TL + G+
Sbjct: 244 F-------SATIIFVRTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKNGRLD 296
Query: 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 176
+L+ATDVAARGLD+ + +I+Y++P D E++VHR GRTGRAG+ G A+L + +RR +
Sbjct: 297 ILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLL 356
Query: 177 RSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTD 235
R++ER + V P VE + + EQ + + ++ ++ +L D
Sbjct: 357 RNIERTMKQSIPEVQLPKVELLCQRRLEQFAKKVQQQLESRDLDEYSALLDKLYSTDDLD 416
Query: 236 --ALAAALAQLSGFSRP 250
LAAAL +++ RP
Sbjct: 417 IKTLAAALLKMAQGERP 433
>sp|Q89AF9|DEAD_BUCBP Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=deaD PE=3 SV=1
Length = 602
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 134/262 (51%), Gaps = 35/262 (13%)
Query: 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 61
LFSATMP ++++SR+++ NP I I + T++ I V
Sbjct: 185 LFSATMPEAIRRISRRFMKNPKEI-----------------RIQSNITTRPDIQQSYWMV 227
Query: 62 YAKG-------------GKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTL 107
Y K TI+F +TK EVS L S AL+GD++Q RE+TL
Sbjct: 228 YGKKTDALIRFLEAEDFSATIIFVRTKNATLEVSEVLERYGYNSAALNGDMNQSLREQTL 287
Query: 108 NGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 167
+ G+ +L+ATDVAARGLD+ + +I+Y++P D E++VHR GRTGRAG++G A+L
Sbjct: 288 EKLKDGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRKGKALLF 347
Query: 168 FTSSQRRTVRSLERDVGCKFEFVSPP----VVEDVLESSAEQVVATLNGVHPESVEFFTP 223
+ +RR +R++ER + V+ P + + LE A++V L+ P
Sbjct: 348 VENRERRLLRNIERAMNISISEVNLPKSDFLSKRRLEKFAQKVQIQLDSKDLHEYRGLLP 407
Query: 224 TAQRLIEEKGTDALAAALAQLS 245
Q ++LAAAL +++
Sbjct: 408 KLQPNNNSLDIESLAAALLKMA 429
>sp|Q75B50|DED1_ASHGO ATP-dependent RNA helicase DED1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DED1
PE=3 SV=2
Length = 623
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 126/219 (57%), Gaps = 24/219 (10%)
Query: 1 MLFSATMPSWVKKLSRKYLDNP--LNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
++FSAT P+ ++ L+ +L + L++ VG+ E + + + + KR++L DL
Sbjct: 341 LMFSATFPTDIQHLAADFLKDYIFLSVGRVGSTSENITQKV----LHVEDIDKRSVLLDL 396
Query: 59 ITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
+ + GG T+VF +TKR AD ++ + +++ A+HGD +Q +RER L FR G+ V
Sbjct: 397 LAA-SDGGLTLVFVETKRMADALTDFLIMQNLSATAIHGDRTQAERERALAFFRTGRANV 455
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVAT VAARGLDIPNV +I+Y+LP+D + +VHR GRTGRAG G A F + V+
Sbjct: 456 LVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGLATAFFNRGNKNVVK 515
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 216
L D+LE + ++V + L+ + E
Sbjct: 516 EL----------------VDILEEANQEVPSFLSQIAKE 538
>sp|Q4L7W0|Y956_STAHJ Probable DEAD-box ATP-dependent RNA helicase SH0956
OS=Staphylococcus haemolyticus (strain JCSC1435)
GN=SH0956 PE=3 SV=1
Length = 503
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 135/247 (54%), Gaps = 9/247 (3%)
Query: 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ--DEKLAEGIKLYAISTTATSKRTILSDL 58
MLFSATMP ++ L ++++ +P + + N+ D ++ E Y K ++
Sbjct: 179 MLFSATMPKAIQTLVQQFMKSPQIVKTMNNEMSDPQIDE----YYTIVKELEKFDTFTNF 234
Query: 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTV 117
+ V+ + IVF +TKR DE++ AL S +E LHGDI+Q +R L F+ + +
Sbjct: 235 LDVH-QPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 293
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVATDVAARGLDI V + ++++P D E++ HR GRTGRAGKEG A+ + +R
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353
Query: 178 SLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHPESVEFFTPTAQRLIEEKGTDA 236
+E G + + PP ++VL++ + + + N + ES + L+EE +
Sbjct: 354 QIEDSNGRRMNALRPPHRKEVLKAREDDIKDKVKNWMSRESEARLKRISSELLEEYDSTE 413
Query: 237 LAAALAQ 243
L A+L Q
Sbjct: 414 LVASLLQ 420
>sp|A6ZWD3|DBP1_YEAS7 ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DBP1 PE=3 SV=1
Length = 617
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 114/182 (62%), Gaps = 8/182 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNP--LNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
++FSAT P ++ L+R +LDN L++ VG+ E + + I LY K++ L DL
Sbjct: 350 LMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRI-LYV---DDMDKKSALLDL 405
Query: 59 ITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
++ KG T++F +TKR AD+++ + + A+HGD +Q +RER L+ F+ +
Sbjct: 406 LSAEHKG-LTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADI 464
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVAT VAARGLDIPNV +I+Y+LP+D + +VHR GRTGRAG G A F S+ + V+
Sbjct: 465 LVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNIVK 524
Query: 178 SL 179
L
Sbjct: 525 GL 526
>sp|P24784|DBP1_YEAST ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DBP1 PE=1 SV=2
Length = 617
Score = 133 bits (334), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 114/182 (62%), Gaps = 8/182 (4%)
Query: 1 MLFSATMPSWVKKLSRKYLDNP--LNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 58
++FSAT P ++ L+R +LDN L++ VG+ E + + I LY K++ L DL
Sbjct: 350 LMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRI-LYV---DDMDKKSALLDL 405
Query: 59 ITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 117
++ KG T++F +TKR AD+++ + + A+HGD +Q +RER L+ F+ +
Sbjct: 406 LSAEHKG-LTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADI 464
Query: 118 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 177
LVAT VAARGLDIPNV +I+Y+LP+D + +VHR GRTGRAG G A F S+ + V+
Sbjct: 465 LVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNIVK 524
Query: 178 SL 179
L
Sbjct: 525 GL 526
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,323,998
Number of Sequences: 539616
Number of extensions: 7644522
Number of successful extensions: 42439
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1880
Number of HSP's successfully gapped in prelim test: 544
Number of HSP's that attempted gapping in prelim test: 30854
Number of HSP's gapped (non-prelim): 7049
length of query: 470
length of database: 191,569,459
effective HSP length: 121
effective length of query: 349
effective length of database: 126,275,923
effective search space: 44070297127
effective search space used: 44070297127
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)