Query 012133
Match_columns 470
No_of_seqs 466 out of 3090
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 23:24:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012133.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012133hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11634 ATP-dependent RNA hel 100.0 9.1E-47 2E-51 402.3 42.9 321 1-331 184-547 (629)
2 KOG0331 ATP-dependent RNA heli 100.0 5.6E-38 1.2E-42 317.6 17.3 183 1-183 275-460 (519)
3 KOG0328 Predicted ATP-dependen 100.0 8.9E-37 1.9E-41 280.1 16.1 190 1-193 204-395 (400)
4 KOG0330 ATP-dependent RNA heli 100.0 4.5E-36 9.8E-41 286.6 17.3 190 1-193 239-429 (476)
5 KOG0342 ATP-dependent RNA heli 100.0 2.8E-35 6E-40 288.9 20.5 247 1-251 265-521 (543)
6 COG0513 SrmB Superfamily II DN 100.0 3E-35 6.6E-40 308.2 20.9 195 1-196 209-407 (513)
7 KOG0333 U5 snRNP-like RNA heli 100.0 3.4E-35 7.3E-40 289.5 17.4 181 1-184 456-637 (673)
8 PRK11776 ATP-dependent RNA hel 100.0 1.2E-33 2.6E-38 294.7 27.1 261 1-328 182-443 (460)
9 KOG0345 ATP-dependent RNA heli 100.0 7.2E-33 1.6E-37 270.3 17.2 194 2-196 193-389 (567)
10 KOG0326 ATP-dependent RNA heli 100.0 2.3E-33 5E-38 261.6 12.7 189 1-193 262-451 (459)
11 KOG0340 ATP-dependent RNA heli 100.0 6.9E-32 1.5E-36 255.2 20.1 194 1-194 188-384 (442)
12 KOG0343 RNA Helicase [RNA proc 100.0 7.1E-32 1.5E-36 267.3 20.0 250 1-252 250-510 (758)
13 KOG0336 ATP-dependent RNA heli 100.0 4E-32 8.7E-37 260.5 15.1 182 1-183 402-584 (629)
14 KOG0332 ATP-dependent RNA heli 100.0 2.1E-31 4.5E-36 253.3 18.1 194 1-197 268-470 (477)
15 PRK04837 ATP-dependent RNA hel 100.0 1.1E-30 2.4E-35 269.7 20.1 187 1-190 194-381 (423)
16 PRK10590 ATP-dependent RNA hel 100.0 2.4E-30 5.2E-35 269.2 21.0 186 1-189 184-370 (456)
17 KOG0338 ATP-dependent RNA heli 100.0 6.5E-31 1.4E-35 258.4 15.1 179 1-182 362-544 (691)
18 PTZ00110 helicase; Provisional 100.0 4.9E-30 1.1E-34 271.3 21.4 184 1-185 312-498 (545)
19 PRK04537 ATP-dependent RNA hel 100.0 6.1E-30 1.3E-34 271.6 21.2 185 1-188 196-381 (572)
20 KOG0327 Translation initiation 100.0 1.1E-29 2.4E-34 243.4 16.1 187 1-192 204-391 (397)
21 KOG0335 ATP-dependent RNA heli 100.0 2.1E-29 4.6E-34 251.3 16.1 179 1-181 266-454 (482)
22 PLN00206 DEAD-box ATP-dependen 100.0 6.8E-29 1.5E-33 261.7 20.5 183 1-185 304-489 (518)
23 KOG0341 DEAD-box protein abstr 100.0 4E-30 8.6E-35 245.3 8.6 168 1-172 361-529 (610)
24 PRK11192 ATP-dependent RNA hel 100.0 1.9E-28 4.1E-33 254.0 21.2 185 1-188 182-369 (434)
25 PRK01297 ATP-dependent RNA hel 100.0 3.3E-28 7.2E-33 254.7 22.4 185 1-188 274-459 (475)
26 PTZ00424 helicase 45; Provisio 100.0 1.1E-27 2.4E-32 245.9 20.3 190 1-193 205-396 (401)
27 KOG0346 RNA helicase [RNA proc 100.0 1.6E-27 3.5E-32 231.0 17.4 182 1-183 205-422 (569)
28 KOG0347 RNA helicase [RNA proc 99.9 1.8E-28 3.8E-33 243.3 7.7 183 20-206 422-605 (731)
29 KOG0348 ATP-dependent RNA heli 99.9 3.9E-27 8.5E-32 233.1 16.1 184 1-184 335-567 (708)
30 TIGR03817 DECH_helic helicase/ 99.9 2E-26 4.3E-31 250.8 22.3 213 1-221 198-438 (742)
31 KOG0339 ATP-dependent RNA heli 99.9 5.5E-27 1.2E-31 230.6 15.4 177 1-179 405-583 (731)
32 PHA02653 RNA helicase NPH-II; 99.9 5.4E-26 1.2E-30 242.3 21.4 216 1-249 325-567 (675)
33 TIGR01970 DEAH_box_HrpB ATP-de 99.9 1.6E-26 3.5E-31 251.7 16.7 238 1-268 150-414 (819)
34 KOG0344 ATP-dependent RNA heli 99.9 2.2E-26 4.7E-31 231.3 15.0 180 2-184 326-508 (593)
35 PRK11664 ATP-dependent RNA hel 99.9 2.8E-26 6.1E-31 250.4 15.6 238 1-268 153-417 (812)
36 TIGR00614 recQ_fam ATP-depende 99.9 4.2E-25 9.1E-30 230.7 23.2 175 1-181 166-343 (470)
37 PLN03137 ATP-dependent DNA hel 99.9 5.9E-25 1.3E-29 239.3 22.4 176 1-181 620-797 (1195)
38 KOG0334 RNA helicase [RNA proc 99.9 5.2E-25 1.1E-29 234.3 17.9 181 1-183 550-732 (997)
39 PRK11057 ATP-dependent DNA hel 99.9 4.6E-24 9.9E-29 228.8 22.6 172 1-180 178-352 (607)
40 KOG0350 DEAD-box ATP-dependent 99.9 6.5E-25 1.4E-29 216.1 13.6 184 1-185 364-554 (620)
41 KOG4284 DEAD box protein [Tran 99.9 1.4E-24 3.1E-29 218.9 13.6 170 1-173 203-381 (980)
42 KOG0337 ATP-dependent RNA heli 99.9 6.9E-25 1.5E-29 211.9 9.7 188 1-190 199-387 (529)
43 TIGR01389 recQ ATP-dependent D 99.9 2.9E-23 6.4E-28 222.8 19.9 173 1-181 166-341 (591)
44 PRK11131 ATP-dependent RNA hel 99.9 1.3E-23 2.9E-28 233.6 15.9 221 1-251 222-472 (1294)
45 PRK12898 secA preprotein trans 99.9 3.9E-22 8.5E-27 209.9 19.3 165 3-173 414-588 (656)
46 TIGR01967 DEAH_box_HrpA ATP-de 99.9 2.9E-22 6.3E-27 223.7 17.4 238 1-268 215-485 (1283)
47 TIGR00580 mfd transcription-re 99.9 1.1E-21 2.4E-26 216.2 20.1 175 1-182 603-787 (926)
48 TIGR02621 cas3_GSU0051 CRISPR- 99.9 9.8E-22 2.1E-26 211.3 16.7 161 1-168 209-388 (844)
49 TIGR01587 cas3_core CRISPR-ass 99.9 1E-21 2.2E-26 198.7 15.1 165 1-171 159-336 (358)
50 PRK09751 putative ATP-dependen 99.9 6.6E-21 1.4E-25 215.8 23.1 185 57-246 236-461 (1490)
51 PRK04914 ATP-dependent helicas 99.9 3.7E-21 7.9E-26 211.4 19.6 163 50-213 479-647 (956)
52 PRK10689 transcription-repair 99.9 4.2E-21 9.1E-26 215.9 20.2 176 1-183 752-937 (1147)
53 COG0514 RecQ Superfamily II DN 99.9 4.3E-21 9.3E-26 198.5 18.5 174 1-182 170-348 (590)
54 PRK13767 ATP-dependent helicas 99.9 1.2E-20 2.6E-25 209.6 22.3 143 60-202 279-432 (876)
55 PRK10917 ATP-dependent DNA hel 99.8 7.7E-20 1.7E-24 198.4 19.6 163 1-169 413-587 (681)
56 TIGR00643 recG ATP-dependent D 99.8 1.4E-19 3.1E-24 195.0 18.9 163 1-169 390-564 (630)
57 PRK09200 preprotein translocas 99.8 4E-19 8.6E-24 191.1 20.3 165 3-173 369-543 (790)
58 KOG0922 DEAH-box RNA helicase 99.8 1.2E-19 2.6E-24 185.8 14.5 240 1-268 199-469 (674)
59 PRK02362 ski2-like helicase; P 99.8 5.6E-19 1.2E-23 194.1 18.9 119 53-171 231-397 (737)
60 COG1643 HrpA HrpA-like helicas 99.8 3E-19 6.5E-24 192.6 15.8 238 1-266 199-464 (845)
61 KOG0349 Putative DEAD-box RNA 99.8 3.6E-19 7.8E-24 172.8 12.0 167 1-170 404-614 (725)
62 KOG0329 ATP-dependent RNA heli 99.8 3.1E-20 6.7E-25 169.1 3.7 152 1-188 221-373 (387)
63 KOG0923 mRNA splicing factor A 99.8 4.6E-19 1E-23 179.9 12.2 241 1-268 414-685 (902)
64 COG1111 MPH1 ERCC4-like helica 99.8 1.6E-18 3.5E-23 172.5 14.6 122 49-171 347-481 (542)
65 TIGR03714 secA2 accessory Sec 99.8 5.5E-18 1.2E-22 180.8 19.7 164 3-173 365-539 (762)
66 PRK05298 excinuclease ABC subu 99.8 1.9E-17 4.2E-22 178.4 23.7 138 53-191 434-586 (652)
67 PRK00254 ski2-like helicase; P 99.8 8.6E-18 1.9E-22 184.3 19.6 111 62-172 235-389 (720)
68 cd00079 HELICc Helicase superf 99.8 4.7E-18 1E-22 145.8 13.7 128 39-167 2-131 (131)
69 TIGR00963 secA preprotein tran 99.8 4.2E-18 9.1E-23 180.6 16.1 165 3-173 346-519 (745)
70 TIGR03158 cas3_cyano CRISPR-as 99.8 6.1E-18 1.3E-22 170.4 15.9 145 1-156 185-357 (357)
71 TIGR00631 uvrb excinuclease AB 99.8 1.6E-17 3.5E-22 178.0 18.5 129 53-182 430-564 (655)
72 PRK01172 ski2-like helicase; P 99.7 2.3E-17 4.9E-22 180.0 17.8 109 62-171 233-378 (674)
73 KOG0351 ATP-dependent DNA heli 99.7 2.3E-17 4.9E-22 180.2 16.0 178 1-183 424-604 (941)
74 PRK12906 secA preprotein trans 99.7 5.2E-17 1.1E-21 173.8 17.7 164 3-172 381-554 (796)
75 KOG0921 Dosage compensation co 99.7 2.1E-16 4.5E-21 165.1 20.5 106 64-170 642-773 (1282)
76 KOG0924 mRNA splicing factor A 99.7 2E-17 4.3E-22 168.5 11.1 241 1-268 504-776 (1042)
77 PHA02558 uvsW UvsW helicase; P 99.7 1.5E-16 3.2E-21 167.4 17.6 112 51-162 329-443 (501)
78 COG1201 Lhr Lhr-like helicases 99.7 5E-16 1.1E-20 166.7 20.9 140 54-193 242-386 (814)
79 PRK09401 reverse gyrase; Revie 99.7 6.5E-17 1.4E-21 182.7 13.8 143 1-157 272-430 (1176)
80 PRK12900 secA preprotein trans 99.7 1.9E-16 4.2E-21 170.5 16.4 165 3-173 539-713 (1025)
81 TIGR01054 rgy reverse gyrase. 99.7 3.2E-16 7E-21 177.3 17.1 129 2-143 271-409 (1171)
82 PF00271 Helicase_C: Helicase 99.7 4.7E-17 1E-21 127.1 7.1 76 84-159 2-78 (78)
83 PRK09694 helicase Cas3; Provis 99.7 6.5E-15 1.4E-19 161.4 25.8 107 51-160 546-664 (878)
84 TIGR00603 rad25 DNA repair hel 99.7 6.2E-16 1.3E-20 165.1 16.3 119 50-172 480-608 (732)
85 PRK14701 reverse gyrase; Provi 99.7 1.5E-16 3.4E-21 183.4 12.5 167 1-179 273-464 (1638)
86 PRK13766 Hef nuclease; Provisi 99.7 9E-16 1.9E-20 170.3 18.1 122 49-171 346-479 (773)
87 KOG0920 ATP-dependent RNA heli 99.7 3.7E-16 8.1E-21 168.3 14.2 238 1-258 323-615 (924)
88 KOG0354 DEAD-box like helicase 99.7 1.7E-15 3.8E-20 159.1 17.7 123 49-173 394-531 (746)
89 COG1202 Superfamily II helicas 99.7 1.1E-15 2.5E-20 153.5 13.8 163 1-171 376-553 (830)
90 KOG0352 ATP-dependent DNA heli 99.6 3.3E-16 7.1E-21 152.2 8.3 175 1-181 180-372 (641)
91 KOG0925 mRNA splicing factor A 99.6 3.6E-15 7.7E-20 147.2 15.7 235 1-267 195-465 (699)
92 COG1200 RecG RecG-like helicas 99.6 1.8E-14 3.9E-19 149.4 19.4 166 1-172 415-592 (677)
93 COG4098 comFA Superfamily II D 99.6 2.2E-14 4.7E-19 136.5 15.0 175 1-180 237-425 (441)
94 KOG0926 DEAH-box RNA helicase 99.6 9.2E-15 2E-19 151.5 11.7 159 91-268 607-783 (1172)
95 smart00490 HELICc helicase sup 99.5 1.9E-14 4E-19 112.7 8.0 80 80-159 2-82 (82)
96 TIGR00595 priA primosomal prot 99.5 1.3E-13 2.7E-18 144.6 15.2 94 78-171 271-381 (505)
97 COG0556 UvrB Helicase subunit 99.5 1.5E-12 3.2E-17 130.6 20.9 133 46-179 427-565 (663)
98 COG1204 Superfamily II helicas 99.5 1.6E-13 3.5E-18 149.0 15.1 119 52-170 240-407 (766)
99 COG1197 Mfd Transcription-repa 99.5 1.4E-12 3E-17 142.6 20.9 175 1-182 746-930 (1139)
100 KOG0353 ATP-dependent DNA heli 99.5 1.9E-13 4.1E-18 131.3 12.0 167 3-173 256-469 (695)
101 PRK05580 primosome assembly pr 99.5 5.8E-13 1.3E-17 144.5 16.3 100 77-176 438-554 (679)
102 COG1203 CRISPR-associated heli 99.5 2.4E-13 5.2E-18 148.8 12.9 169 1-172 374-551 (733)
103 PRK13104 secA preprotein trans 99.5 1.2E-12 2.7E-17 141.3 17.7 165 3-173 385-589 (896)
104 PRK12904 preprotein translocas 99.4 1.3E-12 2.8E-17 141.0 15.4 164 3-172 371-574 (830)
105 PRK13107 preprotein translocas 99.4 5.5E-12 1.2E-16 136.0 17.7 165 3-173 390-593 (908)
106 KOG0951 RNA helicase BRR2, DEA 99.4 1.6E-11 3.4E-16 133.2 16.4 174 2-179 479-710 (1674)
107 PLN03142 Probable chromatin-re 99.3 6.4E-12 1.4E-16 139.5 12.7 136 48-183 469-613 (1033)
108 PF08152 GUCT: GUCT (NUC152) d 99.3 3.8E-12 8.1E-17 102.7 6.3 95 246-347 1-97 (97)
109 KOG0950 DNA polymerase theta/e 99.3 1.4E-11 2.9E-16 131.3 12.1 116 64-179 459-619 (1008)
110 KOG0952 DNA/RNA helicase MER3/ 99.3 8.3E-11 1.8E-15 126.1 17.3 176 2-180 280-500 (1230)
111 COG1205 Distinct helicase fami 99.3 3.9E-11 8.4E-16 132.3 15.3 165 1-169 236-420 (851)
112 COG1061 SSL2 DNA or RNA helica 99.3 4.5E-11 9.7E-16 123.8 12.8 104 53-157 271-375 (442)
113 KOG0947 Cytoplasmic exosomal R 99.2 4.5E-10 9.8E-15 119.3 19.4 106 66-171 568-723 (1248)
114 PRK11448 hsdR type I restricti 99.2 3.9E-10 8.4E-15 127.5 19.9 93 65-159 698-801 (1123)
115 KOG4150 Predicted ATP-dependen 99.2 2.5E-10 5.5E-15 115.1 15.4 200 3-206 457-678 (1034)
116 KOG0948 Nuclear exosomal RNA h 99.2 1.1E-10 2.5E-15 121.0 10.3 107 65-171 383-539 (1041)
117 PRK12903 secA preprotein trans 99.0 8.2E-09 1.8E-13 110.9 14.6 163 3-172 367-540 (925)
118 KOG0953 Mitochondrial RNA heli 98.9 8.7E-09 1.9E-13 104.3 10.5 105 64-170 356-476 (700)
119 PRK12326 preprotein translocas 98.9 5.4E-08 1.2E-12 103.3 16.7 164 3-172 368-548 (764)
120 KOG0385 Chromatin remodeling c 98.8 5.7E-08 1.2E-12 101.7 12.6 168 12-184 438-614 (971)
121 PRK12899 secA preprotein trans 98.8 1.5E-07 3.3E-12 102.4 15.9 165 3-173 509-683 (970)
122 COG1198 PriA Primosomal protei 98.8 1.2E-07 2.6E-12 102.0 14.9 177 1-179 353-611 (730)
123 KOG0384 Chromodomain-helicase 98.8 5.3E-08 1.2E-12 106.4 11.9 131 49-179 682-821 (1373)
124 COG1110 Reverse gyrase [DNA re 98.7 9E-08 1.9E-12 103.3 13.0 126 1-142 280-416 (1187)
125 PRK13103 secA preprotein trans 98.7 2.3E-07 5.1E-12 100.8 14.4 164 3-172 390-592 (913)
126 PRK12901 secA preprotein trans 98.7 4.6E-07 1E-11 99.1 16.1 164 3-172 569-742 (1112)
127 PF00098 zf-CCHC: Zinc knuckle 98.7 1E-08 2.2E-13 55.6 1.5 17 454-470 2-18 (18)
128 TIGR01407 dinG_rel DnaQ family 98.6 4E-07 8.7E-12 102.1 15.2 106 64-170 673-813 (850)
129 COG4581 Superfamily II RNA hel 98.6 3.5E-07 7.6E-12 100.8 13.1 104 66-169 380-535 (1041)
130 KOG0387 Transcription-coupled 98.5 9.2E-07 2E-11 93.3 13.3 124 47-170 527-657 (923)
131 KOG0390 DNA repair protein, SN 98.5 8.3E-07 1.8E-11 95.3 12.5 119 49-167 577-701 (776)
132 KOG0391 SNF2 family DNA-depend 98.5 1.1E-06 2.4E-11 95.5 13.1 123 48-170 1258-1386(1958)
133 CHL00122 secA preprotein trans 98.5 4.4E-06 9.6E-11 90.7 16.9 123 3-130 365-490 (870)
134 KOG0392 SNF2 family DNA-depend 98.4 2.1E-06 4.6E-11 94.1 11.9 122 49-170 1309-1453(1549)
135 PF03880 DbpA: DbpA RNA bindin 98.4 4.8E-07 1E-11 69.5 4.4 61 264-331 1-61 (74)
136 PF06862 DUF1253: Protein of u 98.4 2.9E-05 6.3E-10 79.2 18.5 178 1-179 219-423 (442)
137 PRK12902 secA preprotein trans 98.3 1.7E-05 3.7E-10 86.2 16.5 124 3-131 380-506 (939)
138 KOG0389 SNF2 family DNA-depend 98.2 1.8E-05 4E-10 83.7 12.9 124 49-172 760-889 (941)
139 KOG1123 RNA polymerase II tran 98.2 1.6E-05 3.5E-10 80.1 11.8 107 49-159 526-635 (776)
140 KOG0388 SNF2 family DNA-depend 98.1 1.7E-05 3.6E-10 82.9 10.2 122 49-170 1027-1153(1185)
141 KOG0331 ATP-dependent RNA heli 98.1 4.3E-05 9.2E-10 79.0 13.1 219 65-298 165-424 (519)
142 PRK08074 bifunctional ATP-depe 98.1 6.7E-05 1.5E-09 84.9 15.4 80 64-143 751-835 (928)
143 KOG0949 Predicted helicase, DE 98.1 3.6E-05 7.7E-10 83.2 12.1 82 91-172 965-1049(1330)
144 COG0553 HepA Superfamily II DN 98.1 3E-05 6.5E-10 87.6 12.5 119 50-168 692-817 (866)
145 KOG0921 Dosage compensation co 98.0 2.2E-05 4.8E-10 83.9 9.8 60 261-330 1044-1103(1282)
146 PRK10590 ATP-dependent RNA hel 98.0 0.00012 2.6E-09 76.7 14.9 68 67-138 77-155 (456)
147 COG4096 HsdR Type I site-speci 98.0 3E-05 6.6E-10 82.9 10.1 92 65-158 426-525 (875)
148 TIGR00348 hsdR type I site-spe 98.0 9.1E-05 2E-09 80.9 13.7 93 65-158 514-634 (667)
149 KOG0386 Chromatin remodeling c 97.9 0.00013 2.9E-09 79.1 13.7 123 48-170 708-835 (1157)
150 COG1199 DinG Rad3-related DNA 97.9 0.0002 4.3E-09 78.5 15.3 94 64-160 478-606 (654)
151 KOG1002 Nucleotide excision re 97.9 4.3E-05 9.4E-10 76.9 9.0 122 49-170 619-748 (791)
152 PRK07246 bifunctional ATP-depe 97.9 6.3E-05 1.4E-09 83.8 10.7 77 63-142 645-724 (820)
153 PRK11747 dinG ATP-dependent DN 97.8 0.00015 3.3E-09 79.6 11.6 78 63-143 532-616 (697)
154 COG0653 SecA Preprotein transl 97.8 0.0002 4.3E-09 77.7 11.7 164 3-172 370-546 (822)
155 PF13307 Helicase_C_2: Helicas 97.7 8.4E-05 1.8E-09 66.7 7.4 105 64-170 8-149 (167)
156 KOG1015 Transcription regulato 97.7 0.0007 1.5E-08 73.2 14.7 120 49-168 1125-1272(1567)
157 KOG3973 Uncharacterized conser 97.7 0.00054 1.2E-08 65.8 12.0 12 315-326 284-295 (465)
158 KOG1000 Chromatin remodeling p 97.6 0.0003 6.4E-09 71.1 10.0 105 64-168 491-598 (689)
159 KOG0339 ATP-dependent RNA heli 97.6 0.001 2.2E-08 67.6 12.9 107 67-184 298-423 (731)
160 TIGR00604 rad3 DNA repair heli 97.4 0.0032 6.9E-08 69.6 15.3 79 64-143 521-615 (705)
161 COG0513 SrmB Superfamily II DN 97.3 0.00026 5.6E-09 75.0 5.6 210 68-297 102-355 (513)
162 PF13696 zf-CCHC_2: Zinc knuck 97.3 7.6E-05 1.7E-09 46.3 0.7 16 455-470 11-26 (32)
163 TIGR03117 cas_csf4 CRISPR-asso 97.3 0.0033 7.1E-08 67.6 13.3 78 64-143 469-561 (636)
164 TIGR00596 rad1 DNA repair prot 97.3 0.00076 1.7E-08 74.5 8.2 49 119-170 431-513 (814)
165 COG4889 Predicted helicase [Ge 97.2 0.00024 5.3E-09 76.1 3.0 101 66-166 461-583 (1518)
166 PRK04537 ATP-dependent RNA hel 97.1 0.0075 1.6E-07 64.9 14.2 69 66-138 85-165 (572)
167 KOG0335 ATP-dependent RNA heli 97.0 0.0067 1.5E-07 62.2 11.7 69 66-138 153-232 (482)
168 KOG0330 ATP-dependent RNA heli 97.0 0.0016 3.5E-08 64.2 6.6 132 52-195 117-268 (476)
169 TIGR02562 cas3_yersinia CRISPR 96.8 0.0042 9.1E-08 69.2 9.0 89 69-160 760-881 (1110)
170 KOG0338 ATP-dependent RNA heli 96.7 0.015 3.2E-07 59.5 11.3 112 66-188 253-384 (691)
171 PRK14873 primosome assembly pr 96.6 0.028 6.1E-07 61.2 13.6 63 104-172 462-540 (665)
172 KOG4439 RNA polymerase II tran 96.6 0.012 2.5E-07 62.3 9.7 119 49-167 728-852 (901)
173 KOG0336 ATP-dependent RNA heli 96.6 0.016 3.5E-07 57.7 9.9 273 8-297 229-547 (629)
174 PRK05580 primosome assembly pr 96.5 0.019 4.1E-07 63.1 11.6 92 48-140 172-266 (679)
175 PF13917 zf-CCHC_3: Zinc knuck 96.5 0.001 2.2E-08 44.5 1.0 16 454-469 6-21 (42)
176 PF13871 Helicase_C_4: Helicas 96.5 0.011 2.3E-07 57.1 8.4 79 105-183 52-142 (278)
177 smart00343 ZnF_C2HC zinc finge 96.5 0.001 2.2E-08 39.8 0.9 15 455-469 2-16 (26)
178 TIGR00595 priA primosomal prot 96.5 0.016 3.4E-07 61.4 10.5 90 49-139 8-100 (505)
179 PTZ00368 universal minicircle 96.4 0.0072 1.6E-07 53.0 6.2 67 393-470 28-95 (148)
180 PTZ00368 universal minicircle 96.4 0.012 2.6E-07 51.6 7.5 68 393-470 53-121 (148)
181 PRK10917 ATP-dependent DNA hel 96.4 0.014 3E-07 64.3 9.3 91 49-139 293-390 (681)
182 KOG0109 RNA-binding protein LA 96.3 0.0014 3.1E-08 61.7 1.0 16 455-470 163-178 (346)
183 PRK14873 primosome assembly pr 96.3 0.022 4.8E-07 62.0 10.1 92 48-140 170-265 (665)
184 PF14787 zf-CCHC_5: GAG-polypr 96.2 0.0023 5.1E-08 40.5 1.2 15 454-468 4-18 (36)
185 TIGR00643 recG ATP-dependent D 96.0 0.023 4.9E-07 62.0 8.9 90 49-138 267-363 (630)
186 KOG0951 RNA helicase BRR2, DEA 95.9 0.045 9.7E-07 61.6 9.9 117 58-179 1352-1502(1674)
187 TIGR00580 mfd transcription-re 95.9 0.033 7.1E-07 63.0 9.2 90 49-138 483-579 (926)
188 PF02399 Herpes_ori_bp: Origin 95.8 0.22 4.8E-06 54.5 14.8 111 53-170 270-387 (824)
189 KOG3973 Uncharacterized conser 95.3 0.059 1.3E-06 52.2 7.5 10 174-183 165-174 (465)
190 PRK11634 ATP-dependent RNA hel 95.2 0.13 2.9E-06 55.9 11.0 70 65-138 74-155 (629)
191 COG1198 PriA Primosomal protei 95.0 0.056 1.2E-06 59.0 7.1 92 46-138 225-319 (730)
192 PRK10689 transcription-repair 94.9 0.088 1.9E-06 60.9 8.8 92 47-138 630-728 (1147)
193 COG5082 AIR1 Arginine methyltr 94.9 0.011 2.3E-07 53.0 1.0 15 455-469 63-77 (190)
194 PRK11192 ATP-dependent RNA hel 94.6 0.13 2.9E-06 53.3 8.6 70 66-139 74-154 (434)
195 smart00492 HELICc3 helicase su 94.6 0.19 4.2E-06 43.6 8.2 46 98-143 31-79 (141)
196 KOG1016 Predicted DNA helicase 94.6 0.13 2.8E-06 55.3 8.1 110 64-173 718-849 (1387)
197 COG1110 Reverse gyrase [DNA re 94.5 0.12 2.7E-06 57.3 8.1 60 64-123 124-190 (1187)
198 COG5082 AIR1 Arginine methyltr 94.5 0.015 3.3E-07 52.1 1.1 54 393-469 61-115 (190)
199 KOG0333 U5 snRNP-like RNA heli 94.3 0.1 2.2E-06 53.8 6.5 55 64-122 321-380 (673)
200 smart00491 HELICc2 helicase su 94.1 0.2 4.3E-06 43.6 7.3 42 102-143 32-80 (142)
201 KOG0701 dsRNA-specific nucleas 93.9 0.044 9.5E-07 64.0 3.4 92 67-158 294-398 (1606)
202 PRK14701 reverse gyrase; Provi 93.8 0.19 4.1E-06 60.1 8.6 60 64-123 121-187 (1638)
203 KOG0334 RNA helicase [RNA proc 93.8 0.32 6.9E-06 54.2 9.6 107 66-183 439-567 (997)
204 PRK11776 ATP-dependent RNA hel 93.8 0.41 8.9E-06 50.2 10.2 70 66-139 73-154 (460)
205 KOG2340 Uncharacterized conser 93.7 0.35 7.5E-06 50.1 9.0 114 66-179 553-676 (698)
206 KOG0347 RNA helicase [RNA proc 93.4 0.14 3.1E-06 53.1 5.6 52 67-122 265-321 (731)
207 PF15288 zf-CCHC_6: Zinc knuck 92.6 0.059 1.3E-06 35.4 1.1 15 455-469 4-20 (40)
208 PTZ00110 helicase; Provisional 92.4 0.65 1.4E-05 49.8 9.4 69 66-138 204-283 (545)
209 COG1200 RecG RecG-like helicas 92.4 0.53 1.2E-05 50.4 8.4 84 55-138 301-390 (677)
210 KOG0341 DEAD-box protein abstr 92.3 2.1 4.7E-05 42.8 11.8 111 65-187 246-382 (610)
211 COG1197 Mfd Transcription-repa 92.3 0.5 1.1E-05 53.7 8.5 89 50-138 627-722 (1139)
212 COG1111 MPH1 ERCC4-like helica 92.3 1.9 4.1E-05 44.7 11.8 71 65-140 58-139 (542)
213 TIGR01054 rgy reverse gyrase. 92.1 0.3 6.6E-06 56.8 6.9 59 64-122 120-186 (1171)
214 KOG4400 E3 ubiquitin ligase in 91.7 0.074 1.6E-06 51.3 1.1 18 453-470 144-161 (261)
215 PF14392 zf-CCHC_4: Zinc knuck 91.4 0.071 1.5E-06 37.2 0.4 17 454-470 33-49 (49)
216 KOG0329 ATP-dependent RNA heli 91.0 1.7 3.6E-05 41.1 9.1 110 67-183 112-238 (387)
217 PRK04837 ATP-dependent RNA hel 91.0 1.2 2.5E-05 46.2 9.3 69 66-138 84-163 (423)
218 KOG1001 Helicase-like transcri 90.7 0.054 1.2E-06 58.8 -1.0 119 48-166 520-643 (674)
219 cd00268 DEADc DEAD-box helicas 90.2 2.3 5E-05 38.8 9.7 70 65-138 69-149 (203)
220 TIGR00614 recQ_fam ATP-depende 90.1 1.1 2.3E-05 47.2 8.2 75 64-138 50-133 (470)
221 PF10593 Z1: Z1 domain; Inter 88.8 4.3 9.4E-05 38.5 10.4 88 88-180 110-202 (239)
222 COG5222 Uncharacterized conser 88.6 0.18 3.9E-06 47.9 0.9 17 454-470 178-194 (427)
223 PRK13766 Hef nuclease; Provisi 88.2 5.4 0.00012 44.8 12.4 73 63-140 56-139 (773)
224 KOG4400 E3 ubiquitin ligase in 88.1 0.38 8.3E-06 46.4 2.8 16 455-470 167-182 (261)
225 PRK09401 reverse gyrase; Revie 87.9 1.4 3.1E-05 51.4 7.7 92 45-137 102-206 (1176)
226 PRK01297 ATP-dependent RNA hel 87.9 2.6 5.7E-05 44.3 9.2 70 66-138 163-243 (475)
227 PF00270 DEAD: DEAD/DEAH box h 87.6 4.5 9.8E-05 35.4 9.3 86 49-138 25-125 (169)
228 TIGR01389 recQ ATP-dependent D 87.2 2.3 5.1E-05 46.1 8.5 74 64-137 52-132 (591)
229 TIGR03817 DECH_helic helicase/ 86.8 4.6 0.0001 45.0 10.7 70 64-138 80-163 (742)
230 PLN03137 ATP-dependent DNA hel 86.2 2.7 5.8E-05 48.3 8.4 59 64-122 499-560 (1195)
231 KOG1513 Nuclear helicase MOP-3 86.0 0.95 2.1E-05 49.2 4.5 53 108-160 851-911 (1300)
232 PRK09751 putative ATP-dependen 85.8 2.5 5.3E-05 50.3 8.1 70 65-138 37-130 (1490)
233 KOG0343 RNA Helicase [RNA proc 84.8 3.6 7.8E-05 43.2 7.8 109 67-187 143-271 (758)
234 PRK11057 ATP-dependent DNA hel 84.4 4.4 9.6E-05 44.1 9.0 59 64-122 64-123 (607)
235 PLN03134 glycine-rich RNA-bind 84.1 27 0.00059 30.2 12.7 70 261-339 32-109 (144)
236 KOG0345 ATP-dependent RNA heli 83.8 6 0.00013 40.7 8.8 106 67-182 81-208 (567)
237 PRK13767 ATP-dependent helicas 83.7 3.5 7.6E-05 46.9 8.1 69 66-138 85-178 (876)
238 PLN00206 DEAD-box ATP-dependen 83.4 5.6 0.00012 42.4 9.1 70 65-138 196-276 (518)
239 KOG0107 Alternative splicing f 83.2 1.2 2.6E-05 39.5 3.1 16 455-470 103-118 (195)
240 KOG4284 DEAD box protein [Tran 81.3 13 0.00028 40.0 10.3 69 65-138 93-173 (980)
241 KOG0298 DEAD box-containing he 80.8 2.4 5.2E-05 48.5 5.2 100 63-166 1219-1319(1394)
242 KOG0350 DEAD-box ATP-dependent 80.4 4.7 0.0001 41.8 6.6 73 66-138 216-301 (620)
243 cd01524 RHOD_Pyr_redox Member 80.3 5.9 0.00013 30.9 6.1 43 57-99 43-86 (90)
244 TIGR01659 sex-lethal sex-letha 79.6 23 0.00049 35.7 11.3 56 264-328 194-254 (346)
245 KOG0337 ATP-dependent RNA heli 79.5 10 0.00023 38.5 8.6 70 65-138 90-170 (529)
246 KOG0340 ATP-dependent RNA heli 78.5 3.6 7.8E-05 40.8 5.0 52 67-122 77-133 (442)
247 KOG0348 ATP-dependent RNA heli 77.8 6.6 0.00014 41.1 6.8 84 66-154 212-317 (708)
248 KOG0342 ATP-dependent RNA heli 77.0 14 0.00031 38.2 8.9 108 66-184 155-283 (543)
249 TIGR00963 secA preprotein tran 76.8 13 0.00027 41.2 9.1 62 55-123 88-154 (745)
250 COG2519 GCD14 tRNA(1-methylade 75.6 17 0.00036 34.6 8.4 69 18-88 143-211 (256)
251 cd01523 RHOD_Lact_B Member of 75.0 6.9 0.00015 31.2 5.1 42 58-99 54-96 (100)
252 COG4907 Predicted membrane pro 74.7 5.1 0.00011 40.9 4.9 43 282-324 489-531 (595)
253 TIGR02621 cas3_GSU0051 CRISPR- 74.4 7.6 0.00016 43.5 6.7 52 66-121 62-142 (844)
254 PTZ00424 helicase 45; Provisio 73.4 17 0.00036 37.1 8.7 71 65-139 96-177 (401)
255 KOG0346 RNA helicase [RNA proc 72.6 8.1 0.00017 39.5 5.8 67 52-122 75-153 (569)
256 smart00493 TOPRIM topoisomeras 71.3 11 0.00024 28.2 5.3 58 68-126 2-59 (76)
257 PRK12898 secA preprotein trans 70.4 19 0.00041 39.4 8.5 53 64-122 143-200 (656)
258 COG1201 Lhr Lhr-like helicases 69.8 11 0.00025 42.0 6.8 127 6-138 7-155 (814)
259 PRK13104 secA preprotein trans 68.6 22 0.00049 40.0 8.7 62 54-122 113-179 (896)
260 KOG0389 SNF2 family DNA-depend 67.3 16 0.00035 40.1 7.0 66 57-125 440-511 (941)
261 COG4098 comFA Superfamily II D 66.6 56 0.0012 32.7 9.9 124 42-179 120-251 (441)
262 smart00487 DEXDc DEAD-like hel 65.8 40 0.00086 29.6 8.7 86 49-138 35-135 (201)
263 KOG0116 RasGAP SH3 binding pro 65.6 43 0.00093 34.5 9.5 21 278-298 299-319 (419)
264 PRK00254 ski2-like helicase; P 65.4 21 0.00045 39.8 7.9 68 64-138 67-144 (720)
265 PF12683 DUF3798: Protein of u 65.1 23 0.0005 33.9 6.9 132 39-195 34-174 (275)
266 cd00046 DEXDc DEAD-like helica 64.8 35 0.00075 27.8 7.6 71 49-123 11-88 (144)
267 COG0610 Type I site-specific r 62.4 68 0.0015 37.1 11.4 79 104-183 581-664 (962)
268 COG1205 Distinct helicase fami 61.6 42 0.00091 38.1 9.4 119 65-187 115-257 (851)
269 PRK12899 secA preprotein trans 61.5 33 0.00072 38.9 8.3 52 65-122 135-191 (970)
270 PF11496 HDA2-3: Class II hist 61.5 85 0.0018 30.8 10.5 125 48-172 94-246 (297)
271 KOG0105 Alternative splicing f 61.4 31 0.00066 31.1 6.5 45 279-328 18-65 (241)
272 COG1512 Beta-propeller domains 61.4 11 0.00024 36.4 4.1 18 142-159 76-93 (271)
273 PF05918 API5: Apoptosis inhib 61.3 2.7 5.9E-05 44.6 0.0 15 174-188 264-278 (556)
274 TIGR00631 uvrb excinuclease AB 61.2 58 0.0013 35.9 10.2 106 46-153 37-174 (655)
275 PRK05728 DNA polymerase III su 60.8 28 0.00062 30.1 6.3 82 47-141 10-94 (142)
276 PRK02362 ski2-like helicase; P 59.5 20 0.00043 40.1 6.4 85 47-138 48-143 (737)
277 KOG0119 Splicing factor 1/bran 59.3 4.4 9.5E-05 41.7 1.1 15 455-469 288-302 (554)
278 PRK09200 preprotein translocas 59.1 38 0.00083 37.9 8.4 61 55-122 110-176 (790)
279 TIGR01648 hnRNP-R-Q heterogene 58.7 2.6E+02 0.0056 30.3 14.2 70 264-344 234-307 (578)
280 PRK01172 ski2-like helicase; P 57.2 28 0.00061 38.4 7.1 85 47-138 46-141 (674)
281 TIGR00696 wecB_tagA_cpsF bacte 56.2 57 0.0012 29.4 7.7 67 52-118 34-104 (177)
282 KOG2044 5'-3' exonuclease HKE1 54.9 4.5 9.7E-05 44.0 0.3 15 455-469 263-277 (931)
283 COG0052 RpsB Ribosomal protein 54.6 34 0.00074 32.4 6.0 37 51-87 49-85 (252)
284 COG0514 RecQ Superfamily II DN 53.9 35 0.00075 36.8 6.7 58 65-122 57-115 (590)
285 PF03808 Glyco_tran_WecB: Glyc 53.7 56 0.0012 29.1 7.2 68 52-119 34-106 (172)
286 KOG0383 Predicted helicase [Ge 52.4 15 0.00032 40.2 3.7 77 50-126 615-695 (696)
287 COG4371 Predicted membrane pro 51.3 33 0.00071 32.4 5.2 6 317-322 10-15 (334)
288 PF14617 CMS1: U3-containing 9 51.0 64 0.0014 30.9 7.4 69 66-137 127-206 (252)
289 COG3587 Restriction endonuclea 50.7 33 0.00072 38.2 6.0 71 114-184 483-566 (985)
290 KOG0352 ATP-dependent DNA heli 49.9 23 0.00049 36.3 4.3 81 42-123 39-122 (641)
291 cd06533 Glyco_transf_WecG_TagA 48.5 79 0.0017 28.1 7.3 67 52-118 32-103 (171)
292 PRK12904 preprotein translocas 48.0 75 0.0016 35.8 8.3 62 54-122 112-178 (830)
293 KOG0385 Chromatin remodeling c 46.7 81 0.0018 34.9 8.0 57 63-121 215-274 (971)
294 PF04364 DNA_pol3_chi: DNA pol 46.4 58 0.0013 27.9 5.9 80 52-142 15-96 (137)
295 COG1512 Beta-propeller domains 46.2 26 0.00055 33.9 3.9 9 77-85 78-86 (271)
296 PRK05298 excinuclease ABC subu 46.0 1.5E+02 0.0032 32.7 10.4 106 46-153 40-177 (652)
297 PF12353 eIF3g: Eukaryotic tra 45.9 11 0.00023 32.1 1.2 16 454-470 108-123 (128)
298 COG4907 Predicted membrane pro 45.5 21 0.00045 36.7 3.3 10 133-142 298-307 (595)
299 COG0353 RecR Recombinational D 44.0 49 0.0011 30.2 5.1 62 65-126 78-148 (198)
300 cd01521 RHOD_PspE2 Member of t 43.9 36 0.00077 27.6 4.1 41 60-100 59-102 (110)
301 PF13245 AAA_19: Part of AAA d 43.7 40 0.00086 25.6 4.0 40 46-85 18-62 (76)
302 KOG2673 Uncharacterized conser 43.3 12 0.00026 38.3 1.2 16 455-470 131-146 (485)
303 KOG0328 Predicted ATP-dependen 43.1 57 0.0012 31.7 5.6 110 64-178 94-216 (400)
304 PRK06958 single-stranded DNA-b 42.1 1.1E+02 0.0025 27.6 7.2 8 263-270 28-35 (182)
305 PRK15327 type III secretion sy 41.5 3.6E+02 0.0079 27.6 11.4 94 10-111 171-282 (393)
306 PRK06646 DNA polymerase III su 41.3 99 0.0021 27.2 6.6 82 47-141 10-93 (154)
307 cd01531 Acr2p Eukaryotic arsen 41.0 1.1E+02 0.0023 24.8 6.6 37 64-100 61-108 (113)
308 PF12614 RRF_GI: Ribosome recy 40.6 1.1E+02 0.0023 26.0 6.2 31 144-190 8-38 (128)
309 KOG0326 ATP-dependent RNA heli 40.3 82 0.0018 31.2 6.3 102 66-178 154-274 (459)
310 cd01534 4RHOD_Repeat_3 Member 39.6 67 0.0014 25.1 4.9 35 65-99 56-91 (95)
311 PF01751 Toprim: Toprim domain 37.8 22 0.00047 28.5 1.8 61 68-128 1-74 (100)
312 cd01518 RHOD_YceA Member of th 37.3 1.9E+02 0.0041 22.7 7.3 37 63-99 59-97 (101)
313 COG3973 Superfamily I DNA and 37.2 3.2E+02 0.007 29.7 10.5 113 8-141 601-716 (747)
314 KOG2560 RNA splicing factor - 36.6 8.8 0.00019 39.2 -0.8 15 454-468 114-128 (529)
315 smart00450 RHOD Rhodanese Homo 36.5 52 0.0011 25.2 3.9 38 63-100 54-93 (100)
316 PRK14086 dnaA chromosomal repl 36.5 6.1E+02 0.013 27.8 13.0 26 277-302 552-578 (617)
317 TIGR02554 PrgH type III secret 36.3 4.8E+02 0.01 26.7 11.4 116 10-133 166-309 (389)
318 PHA02653 RNA helicase NPH-II; 35.7 92 0.002 34.4 6.7 68 65-138 222-297 (675)
319 KOG0314 Predicted E3 ubiquitin 35.3 20 0.00043 37.0 1.4 20 451-470 157-176 (448)
320 cd01444 GlpE_ST GlpE sulfurtra 35.1 85 0.0019 24.2 4.9 43 56-98 47-91 (96)
321 cd01535 4RHOD_Repeat_4 Member 34.9 98 0.0021 26.7 5.6 48 54-101 38-87 (145)
322 COG1204 Superfamily II helicas 34.7 80 0.0017 35.4 6.1 93 55-154 65-176 (766)
323 PHA02558 uvsW UvsW helicase; P 34.2 2E+02 0.0044 30.4 9.0 62 66-138 159-228 (501)
324 COG1922 WecG Teichoic acid bio 33.8 1.9E+02 0.0041 27.7 7.6 68 52-119 94-166 (253)
325 cd00188 TOPRIM Topoisomerase-p 32.9 1.2E+02 0.0026 21.9 5.3 60 68-128 2-61 (83)
326 PF07652 Flavi_DEAD: Flaviviru 32.2 83 0.0018 27.4 4.5 35 53-87 20-55 (148)
327 COG4152 ABC-type uncharacteriz 31.9 4.8E+02 0.01 25.2 13.9 81 51-138 165-248 (300)
328 TIGR03714 secA2 accessory Sec 31.7 1.7E+02 0.0037 32.8 7.9 62 54-122 101-172 (762)
329 PF10083 DUF2321: Uncharacteri 31.4 1.8E+02 0.0038 25.6 6.3 73 133-242 55-127 (158)
330 cd01533 4RHOD_Repeat_2 Member 31.1 1.4E+02 0.0031 23.9 5.7 37 64-100 65-104 (109)
331 PRK03692 putative UDP-N-acetyl 31.0 2.2E+02 0.0047 27.1 7.6 68 52-119 91-162 (243)
332 PF02445 NadA: Quinolinate syn 30.9 1.4E+02 0.0029 29.3 6.2 169 9-214 89-273 (296)
333 KOG0351 ATP-dependent DNA heli 30.5 91 0.002 35.8 5.7 57 66-122 305-364 (941)
334 cd00158 RHOD Rhodanese Homolog 29.5 2.2E+02 0.0049 21.0 6.4 36 63-98 48-85 (89)
335 cd01528 RHOD_2 Member of the R 29.2 1.5E+02 0.0033 23.2 5.5 37 64-100 57-95 (101)
336 PRK13103 secA preprotein trans 29.2 2.4E+02 0.0052 32.2 8.5 65 52-123 111-180 (913)
337 cd01529 4RHOD_Repeats Member o 28.6 1E+02 0.0022 24.0 4.3 37 63-99 54-92 (96)
338 cd01526 RHOD_ThiF Member of th 28.2 70 0.0015 26.4 3.4 39 63-101 70-111 (122)
339 smart00115 CASc Caspase, inter 27.8 3.9E+02 0.0084 25.1 8.9 83 64-152 7-106 (241)
340 PF06200 tify: tify domain; I 27.3 62 0.0013 20.9 2.2 16 313-328 17-33 (36)
341 TIGR00096 probable S-adenosylm 27.2 5.9E+02 0.013 24.7 12.2 87 46-135 7-93 (276)
342 PRK13107 preprotein translocas 27.2 2.3E+02 0.005 32.3 8.0 63 53-122 112-179 (908)
343 KOG1133 Helicase of the DEAD s 27.0 9.1E+02 0.02 26.9 14.6 76 65-143 629-720 (821)
344 PRK01415 hypothetical protein; 26.8 1.1E+02 0.0023 29.3 4.7 40 63-102 169-210 (247)
345 PRK00162 glpE thiosulfate sulf 26.5 1.4E+02 0.0031 23.8 5.0 46 55-100 48-95 (108)
346 PRK15483 type III restriction- 26.4 2.4E+02 0.0052 32.6 8.0 70 114-183 501-580 (986)
347 cd01520 RHOD_YbbB Member of th 26.1 1.3E+02 0.0028 25.1 4.7 39 62-100 83-123 (128)
348 TIGR01012 Sa_S2_E_A ribosomal 26.1 1.7E+02 0.0036 26.9 5.7 34 52-87 49-82 (196)
349 cd01027 TOPRIM_RNase_M5_like T 26.0 1.7E+02 0.0036 22.6 4.9 52 68-123 3-54 (81)
350 COG0135 TrpF Phosphoribosylant 26.0 5.3E+02 0.012 23.9 9.6 57 52-110 40-97 (208)
351 KOG0386 Chromatin remodeling c 25.9 93 0.002 35.5 4.6 70 52-122 431-501 (1157)
352 KOG0952 DNA/RNA helicase MER3/ 25.8 2.1E+02 0.0045 33.1 7.2 113 65-185 164-297 (1230)
353 cd01449 TST_Repeat_2 Thiosulfa 25.8 1.5E+02 0.0033 23.9 5.1 45 54-98 65-113 (118)
354 KOG1257 NADP+-dependent malic 24.6 8.8E+02 0.019 25.9 16.3 155 68-232 115-275 (582)
355 PRK12311 rpsB 30S ribosomal pr 24.6 2.3E+02 0.005 28.2 6.8 31 57-87 50-80 (326)
356 cd01527 RHOD_YgaP Member of th 24.5 1.1E+02 0.0024 23.9 3.9 38 63-100 52-91 (99)
357 cd00032 CASc Caspase, interleu 24.2 6E+02 0.013 23.8 10.3 84 64-153 8-108 (243)
358 COG5179 TAF1 Transcription ini 23.9 36 0.00078 36.3 1.0 16 454-469 939-956 (968)
359 KOG0116 RasGAP SH3 binding pro 23.7 1.6E+02 0.0035 30.5 5.6 9 116-124 122-130 (419)
360 KOG1802 RNA helicase nonsense 23.4 2.9E+02 0.0062 30.4 7.4 39 54-94 445-484 (935)
361 PF04273 DUF442: Putative phos 22.6 2.8E+02 0.0062 22.7 5.9 48 37-84 56-105 (110)
362 PRK06739 pyruvate kinase; Vali 22.5 4.5E+02 0.0098 26.5 8.4 32 100-131 250-281 (352)
363 TIGR00036 dapB dihydrodipicoli 22.4 2.4E+02 0.0051 27.1 6.4 58 65-122 69-126 (266)
364 PF06273 eIF-4B: Plant specifi 22.3 4.9E+02 0.011 27.3 8.7 6 356-361 112-117 (492)
365 cd01448 TST_Repeat_1 Thiosulfa 22.3 1.8E+02 0.004 23.6 4.9 38 63-100 77-117 (122)
366 cd01425 RPS2 Ribosomal protein 22.1 4.1E+02 0.009 24.1 7.6 48 54-101 44-96 (193)
367 cd01080 NAD_bind_m-THF_DH_Cycl 22.0 2.6E+02 0.0055 24.9 6.0 76 64-146 43-122 (168)
368 PTZ00254 40S ribosomal protein 21.6 1.6E+02 0.0035 28.1 4.8 65 51-122 57-126 (249)
369 COG0074 SucD Succinyl-CoA synt 20.6 5.9E+02 0.013 24.8 8.3 62 52-114 54-116 (293)
370 PRK11664 ATP-dependent RNA hel 20.6 3.6E+02 0.0077 30.7 8.0 84 49-142 31-126 (812)
371 cd01522 RHOD_1 Member of the R 20.4 2E+02 0.0044 23.5 4.8 38 63-100 62-101 (117)
372 PLN02160 thiosulfate sulfurtra 20.1 2.1E+02 0.0045 24.3 4.9 38 63-100 79-118 (136)
373 PF02670 DXP_reductoisom: 1-de 20.1 5.4E+02 0.012 21.8 7.2 70 50-128 34-104 (129)
No 1
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=9.1e-47 Score=402.31 Aligned_cols=321 Identities=27% Similarity=0.448 Sum_probs=276.2
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
||||||||+.+..++++|+.+|..|.+.. .......+.+.|+.+....|.+.|..+|... ...++||||+|+..+++
T Consensus 184 llfSAT~p~~i~~i~~~~l~~~~~i~i~~--~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~-~~~~~IVF~~tk~~a~~ 260 (629)
T PRK11634 184 ALFSATMPEAIRRITRRFMKEPQEVRIQS--SVTTRPDISQSYWTVWGMRKNEALVRFLEAE-DFDAAIIFVRTKNATLE 260 (629)
T ss_pred EEEEccCChhHHHHHHHHcCCCeEEEccC--ccccCCceEEEEEEechhhHHHHHHHHHHhc-CCCCEEEEeccHHHHHH
Confidence 58999999999999999999999887753 2334567888888888888989998888765 45799999999999999
Q ss_pred HHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCC
Q 012133 81 VSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 159 (470)
Q Consensus 81 l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g 159 (470)
|++.|.. ++.+..+|++|++.+|++++++|++++++||||||++++|||+|+|++|||||+|.++++|+||+|||||+|
T Consensus 261 l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaG 340 (629)
T PRK11634 261 VAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAG 340 (629)
T ss_pred HHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCC
Confidence 9999985 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeChhhHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHHHHHHHccc-CccchhhhHHHHHHHHHh-----hC
Q 012133 160 KEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV-HPESVEFFTPTAQRLIEE-----KG 233 (470)
Q Consensus 160 ~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~a~~l~~~-----~~ 233 (470)
+.|.+++|+++.+...++.|++.++..++.+.+|..+++.+.....+...+... ....++.|.+.++++++. .+
T Consensus 341 r~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 420 (629)
T PRK11634 341 RAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPTAEGEELD 420 (629)
T ss_pred CcceEEEEechHHHHHHHHHHHHhCCCcceecCCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhccccCC
Confidence 999999999999999999999999999999999999888888887777766543 234577788888888864 67
Q ss_pred HHHHHHHHHHHcCCCCC------C-----C---Ccc-----------------c--cc---CCCCeEEEEEeeCCccccC
Q 012133 234 TDALAAALAQLSGFSRP------P-----S---SRS-----------------L--IN---HEQGWVTLQLTRDSAFSRG 277 (470)
Q Consensus 234 ~~~l~~al~~l~~~~~~------~-----~---~r~-----------------l--~~---~~~~~~~~~~~~~~~~~~~ 277 (470)
++.++++|+.+..-..+ + . .+. . .. ...+|++++++.++ ++
T Consensus 421 ~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~ 497 (629)
T PRK11634 421 LETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGR---DD 497 (629)
T ss_pred HHHHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccccccccCCCCEEEEEeccc---cc
Confidence 89999999988632211 0 0 000 0 00 12268999999999 89
Q ss_pred CcchhhHHhHhhhhcCcCcCccccEEEeecCccceeEeecCHHHHHHHHhhcCC
Q 012133 278 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 331 (470)
Q Consensus 278 ~~~~~~v~~~l~~~~~~~~~~Ig~I~i~~~~~~~ga~fdv~~~~a~~i~~~~~~ 331 (470)
.+.|++|+++|++...+...+||+|+|++++ ++||||++.++++++....
T Consensus 498 ~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~~----s~v~~~~~~~~~~~~~~~~ 547 (629)
T PRK11634 498 GVEVRHIVGAIANEGDISSRYIGNIKLFASH----STIELPKGMPGEVLQHFTR 547 (629)
T ss_pred CCCHHHHHHHHHhhcCCChhhCCcEEEeCCc----eEEEcChhhHHHHHHHhcc
Confidence 9999999999999999999999999999998 7999999999999987643
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-38 Score=317.60 Aligned_cols=183 Identities=45% Similarity=0.714 Sum_probs=169.9
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHc--CCCeEEEEeCchHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA--KGGKTIVFTQTKRDA 78 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~--~~~~~lVF~~t~~~~ 78 (470)
||||||+|.||+.+++.||.+|..|++....+.....+|.|....+++..|...|..+|..+. ..+|+||||+|++.|
T Consensus 275 lm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~ 354 (519)
T KOG0331|consen 275 LMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTC 354 (519)
T ss_pred EEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhH
Confidence 689999999999999999999999998766566778899999999999999999999998874 567999999999999
Q ss_pred HHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCC
Q 012133 79 DEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 157 (470)
Q Consensus 79 ~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR 157 (470)
++|+..|.. .+.+.+|||+++|.+|+.+|+.|++|+..||||||||+||||||+|++|||||+|.++++|+||+|||||
T Consensus 355 ~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGR 434 (519)
T KOG0331|consen 355 DELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGR 434 (519)
T ss_pred HHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCcccc
Confidence 999999996 6999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEeeChhhHHHHHHHHHHh
Q 012133 158 AGKEGTAILMFTSSQRRTVRSLERDV 183 (470)
Q Consensus 158 ~g~~g~~i~l~~~~~~~~~~~i~~~~ 183 (470)
+++.|.+++|++..+......+.+.+
T Consensus 435 a~~~G~A~tfft~~~~~~a~~l~~~l 460 (519)
T KOG0331|consen 435 AGKKGTAITFFTSDNAKLARELIKVL 460 (519)
T ss_pred CCCCceEEEEEeHHHHHHHHHHHHHH
Confidence 99999999999998877666665544
No 3
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.9e-37 Score=280.06 Aligned_cols=190 Identities=34% Similarity=0.598 Sum_probs=175.9
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCccc-HHHHHHHHHHHHcCCCeEEEEeCchHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDAD 79 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~lVF~~t~~~~~ 79 (470)
+|+|||+|.+|.+..++||.||+.|-+. .++.+...|++||+.+..++ |.+.|.+|.+.+. -.+++|||||+..++
T Consensus 204 v~~SATlp~eilemt~kfmtdpvrilvk--rdeltlEgIKqf~v~ve~EewKfdtLcdLYd~Lt-ItQavIFcnTk~kVd 280 (400)
T KOG0328|consen 204 VLVSATLPHEILEMTEKFMTDPVRILVK--RDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLT-ITQAVIFCNTKRKVD 280 (400)
T ss_pred EEEeccCcHHHHHHHHHhcCCceeEEEe--cCCCchhhhhhheeeechhhhhHhHHHHHhhhhe-hheEEEEecccchhh
Confidence 5899999999999999999999998653 56677788999999987764 9999999988763 479999999999999
Q ss_pred HHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCC
Q 012133 80 EVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 158 (470)
Q Consensus 80 ~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~ 158 (470)
.|.+.+.. .+.+..+||+|+|++|++++..||+++.+|||+|||.+||||+|.|++|||||+|.+.+.|+||+||.||.
T Consensus 281 wLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRF 360 (400)
T KOG0328|consen 281 WLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRF 360 (400)
T ss_pred HHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhcccccc
Confidence 99999985 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeChhhHHHHHHHHHHhCCCccccCCC
Q 012133 159 GKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 193 (470)
Q Consensus 159 g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p 193 (470)
|++|.+|.|+...+.+.++.|++++...+..++..
T Consensus 361 GRkGvainFVk~~d~~~lrdieq~yst~i~emp~n 395 (400)
T KOG0328|consen 361 GRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMN 395 (400)
T ss_pred CCcceEEEEecHHHHHHHHHHHHHHhhhcccccch
Confidence 99999999999999999999999999888876554
No 4
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-36 Score=286.56 Aligned_cols=190 Identities=36% Similarity=0.564 Sum_probs=176.9
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
+|||||||+.|.+|.+.-+++|+.|.+. ....+.++++++|+.++..+|...|..||+.. ....+||||+|...++.
T Consensus 239 ~LfsATMt~kv~kL~rasl~~p~~v~~s--~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~-~g~s~iVF~~t~~tt~~ 315 (476)
T KOG0330|consen 239 FLFSATMTKKVRKLQRASLDNPVKVAVS--SKYQTVDHLKQTYLFVPGKDKDTYLVYLLNEL-AGNSVIVFCNTCNTTRF 315 (476)
T ss_pred EEEEeecchhhHHHHhhccCCCeEEecc--chhcchHHhhhheEeccccccchhHHHHHHhh-cCCcEEEEEeccchHHH
Confidence 5899999999999999999999999764 45567788999999999999999999999876 55899999999999999
Q ss_pred HHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCC
Q 012133 81 VSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 159 (470)
Q Consensus 81 l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g 159 (470)
++-.|.. ++.+.+|||+|+|..|.-.+++|+++...|||||||++||+|||.|++|||||+|.+..+||||+|||+|+|
T Consensus 316 la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG 395 (476)
T KOG0330|consen 316 LALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG 395 (476)
T ss_pred HHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC
Confidence 9999986 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeChhhHHHHHHHHHHhCCCccccCCC
Q 012133 160 KEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 193 (470)
Q Consensus 160 ~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p 193 (470)
++|++|.|++..|.+.+.+||..++.+.+..+.+
T Consensus 396 rsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~ 429 (476)
T KOG0330|consen 396 RSGKAITLVTQYDVELVQRIEHALGKKLPEYKVD 429 (476)
T ss_pred CCcceEEEEehhhhHHHHHHHHHHhcCCCccCcc
Confidence 9999999999999999999999999887654433
No 5
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.8e-35 Score=288.89 Aligned_cols=247 Identities=31% Similarity=0.442 Sum_probs=201.8
Q ss_pred CEEeecCCHHHHHHHHHHcC-CCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDAD 79 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~-~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~ 79 (470)
+|||||+|++|+++++--|+ +|+.|++.......+.+.+++-|+.++...++.+|..+|+.+-...++||||+|...+.
T Consensus 265 ~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk 344 (543)
T KOG0342|consen 265 LLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVK 344 (543)
T ss_pred eEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHH
Confidence 68999999999999998776 69999999888888999999999999888888888889887756689999999999999
Q ss_pred HHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCC
Q 012133 80 EVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 158 (470)
Q Consensus 80 ~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~ 158 (470)
.+++.|.. .++|..|||.++|..|..+...|++.+.-|||||||++||+|+|+|++||+||+|.++++||||+|||||.
T Consensus 345 ~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~ 424 (543)
T KOG0342|consen 345 FHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTARE 424 (543)
T ss_pred HHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhcccccc
Confidence 99999985 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeChhhHHHHHHHHHHhCCCccccCCCCH-HHHHHHHHHHHHHHHcccCccchhhhHHHHHHHH-------H
Q 012133 159 GKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV-EDVLESSAEQVVATLNGVHPESVEFFTPTAQRLI-------E 230 (470)
Q Consensus 159 g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~l~-------~ 230 (470)
|++|.+++++.+.|..+++.|+ .+.++..+.|+. .+.++...+.++..-........+.|..+...+- .
T Consensus 425 gk~G~alL~l~p~El~Flr~LK---~lpl~~~e~~~~~~~~v~~~~~~li~~~y~~~~aak~ay~syl~~y~s~slk~~~ 501 (543)
T KOG0342|consen 425 GKEGKALLLLAPWELGFLRYLK---KLPLEEFEFPPLKPEDVQSQLEKLISKNYSLKEAAKEAYKSYLGAYNSHSLKDIF 501 (543)
T ss_pred CCCceEEEEeChhHHHHHHHHh---hCCCcccCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccchhhhccc
Confidence 9999999999999999999998 445555554443 3444555555554332233333333333322221 1
Q ss_pred hhCHHHHHHHHHHHcCCCCCC
Q 012133 231 EKGTDALAAALAQLSGFSRPP 251 (470)
Q Consensus 231 ~~~~~~l~~al~~l~~~~~~~ 251 (470)
....-.|+ ++++.+|++.||
T Consensus 502 ~~~~l~La-~~~~s~gf~~pp 521 (543)
T KOG0342|consen 502 NVNLLELA-AVAKSFGFSVPP 521 (543)
T ss_pred ccchhhHH-HHHHHcCCCCCc
Confidence 12233556 888888888765
No 6
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-35 Score=308.23 Aligned_cols=195 Identities=42% Similarity=0.703 Sum_probs=176.3
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCccc-HHHHHHHHHHHHcCCCeEEEEeCchHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDAD 79 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~lVF~~t~~~~~ 79 (470)
+|||||||+.|.++++.|+++|..|.+.......+...|.|+++.++..+ |.++|..+++.. ...++||||+|+..++
T Consensus 209 llfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~-~~~~~IVF~~tk~~~~ 287 (513)
T COG0513 209 LLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDE-DEGRVIVFVRTKRLVE 287 (513)
T ss_pred EEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcC-CCCeEEEEeCcHHHHH
Confidence 58999999999999999999999998864444447889999999999876 999999999876 3458999999999999
Q ss_pred HHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCC
Q 012133 80 EVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 158 (470)
Q Consensus 80 ~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~ 158 (470)
.|+..|.. ++.+..|||+|+|++|.++++.|++++.+|||||||++||||||+|++|||||+|.+++.|+||+|||||+
T Consensus 288 ~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRa 367 (513)
T COG0513 288 ELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRA 367 (513)
T ss_pred HHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccC
Confidence 99999985 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeChh-hHHHHHHHHHHhCCCcc-ccCCCCHH
Q 012133 159 GKEGTAILMFTSS-QRRTVRSLERDVGCKFE-FVSPPVVE 196 (470)
Q Consensus 159 g~~g~~i~l~~~~-~~~~~~~i~~~~~~~~~-~~~~p~~~ 196 (470)
|++|.+++|+++. |...+..|++.+...++ ...+|...
T Consensus 368 G~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~~ 407 (513)
T COG0513 368 GRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDE 407 (513)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcch
Confidence 9999999999986 89999999999877655 44444433
No 7
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3.4e-35 Score=289.52 Aligned_cols=181 Identities=38% Similarity=0.591 Sum_probs=164.6
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
++||||||+.|..|++.||.+|+.|.+- ......+-++|.++.+..+.|...|..+|... ...++|||+|+++.|+.
T Consensus 456 ~mftatm~p~verlar~ylr~pv~vtig--~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~ 532 (673)
T KOG0333|consen 456 VMFTATMPPAVERLARSYLRRPVVVTIG--SAGKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADA 532 (673)
T ss_pred EEEecCCChHHHHHHHHHhhCCeEEEec--cCCCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHH
Confidence 5899999999999999999999999764 34455677888888888888999999998776 56899999999999999
Q ss_pred HHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCC
Q 012133 81 VSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 159 (470)
Q Consensus 81 l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g 159 (470)
|++.|.+ ++.+..|||+-+|++|+.+|+.|+++...|||||||++||||||+|.+|||||+++++++|+||+|||||+|
T Consensus 533 lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAG 612 (673)
T KOG0333|consen 533 LAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAG 612 (673)
T ss_pred HHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccc
Confidence 9999996 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeChhhHHHHHHHHHHhC
Q 012133 160 KEGTAILMFTSSQRRTVRSLERDVG 184 (470)
Q Consensus 160 ~~g~~i~l~~~~~~~~~~~i~~~~~ 184 (470)
+.|+++.|+++.+...+..|.+.+.
T Consensus 613 k~GtaiSflt~~dt~v~ydLkq~l~ 637 (673)
T KOG0333|consen 613 KSGTAISFLTPADTAVFYDLKQALR 637 (673)
T ss_pred cCceeEEEeccchhHHHHHHHHHHH
Confidence 9999999999988666666555443
No 8
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.2e-33 Score=294.74 Aligned_cols=261 Identities=30% Similarity=0.470 Sum_probs=221.8
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
|+||||+|+.+..+++.++.+|..|.+... .....++++++.++...|.+.|..++... ...++||||+|++.++.
T Consensus 182 ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~---~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~t~~~~~~ 257 (460)
T PRK11776 182 LLFSATYPEGIAAISQRFQRDPVEVKVEST---HDLPAIEQRFYEVSPDERLPALQRLLLHH-QPESCVVFCNTKKECQE 257 (460)
T ss_pred EEEEecCcHHHHHHHHHhcCCCEEEEECcC---CCCCCeeEEEEEeCcHHHHHHHHHHHHhc-CCCceEEEECCHHHHHH
Confidence 589999999999999999999998877432 23455888888888888999999988765 45789999999999999
Q ss_pred HHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCC
Q 012133 81 VSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 159 (470)
Q Consensus 81 l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g 159 (470)
+++.|.. ++.+..+||+|++.+|+.+++.|+++.++|||||+++++|||+|++++||||++|.++++|+||+|||||+|
T Consensus 258 l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g 337 (460)
T PRK11776 258 VADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAG 337 (460)
T ss_pred HHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCC
Confidence 9999985 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeChhhHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHHHHHHHcccCccchhhhHHHHHHHHHhhCHHHHHH
Q 012133 160 KEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAA 239 (470)
Q Consensus 160 ~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~l~~~~~~~~l~~ 239 (470)
+.|.+++|+.+.+...++.|++.++..+++.++|......
T Consensus 338 ~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~l~~~~~~~---------------------------------------- 377 (460)
T PRK11776 338 SKGLALSLVAPEEMQRANAIEDYLGRKLNWEPLPSLSPLS---------------------------------------- 377 (460)
T ss_pred CcceEEEEEchhHHHHHHHHHHHhCCCCceecCCchhhcc----------------------------------------
Confidence 9999999999999999999999988887776655322100
Q ss_pred HHHHHcCCCCCCCCcccccCCCCeEEEEEeeCCccccCCcchhhHHhHhhhhcCcCcCccccEEEeecCccceeEeecCH
Q 012133 240 ALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPE 319 (470)
Q Consensus 240 al~~l~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~Ig~I~i~~~~~~~ga~fdv~~ 319 (470)
.. .....+.++.+..++ ...+.+.++++.++........++|.|.+.+.+ ++++++.
T Consensus 378 --------~~--------~~~~~~~~l~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~ 434 (460)
T PRK11776 378 --------GV--------PLLPEMVTLCIDGGK---KDKLRPGDILGALTGDAGLDGAQIGKINVTDFH----AYVAVER 434 (460)
T ss_pred --------cc--------cCCCCeEEEEEeccc---ccCCCccchHHHhhcccCCChhhcCCccccccc----ceeecch
Confidence 00 011246778877776 556778889998888777777889999988776 6899999
Q ss_pred HHHHHHHhh
Q 012133 320 EIAKELLNK 328 (470)
Q Consensus 320 ~~a~~i~~~ 328 (470)
+.++.++..
T Consensus 435 ~~~~~~~~~ 443 (460)
T PRK11776 435 AVAKKALKK 443 (460)
T ss_pred hhHHHHHHH
Confidence 988888754
No 9
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.2e-33 Score=270.26 Aligned_cols=194 Identities=34% Similarity=0.497 Sum_probs=174.3
Q ss_pred EEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHH
Q 012133 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEV 81 (470)
Q Consensus 2 lfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l 81 (470)
|||||+..++.+|++..++||+.|.+.......++..+..+|+.|+...|...|.++|... ..+++|||.+|...++..
T Consensus 193 LFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~-~~kK~iVFF~TCasVeYf 271 (567)
T KOG0345|consen 193 LFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNN-KDKKCIVFFPTCASVEYF 271 (567)
T ss_pred cccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhcc-ccccEEEEecCcchHHHH
Confidence 7999999999999999999999999876555557888999999999999999999999875 668999999999999999
Q ss_pred HHHHhc---CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCC
Q 012133 82 SLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 158 (470)
Q Consensus 82 ~~~l~~---~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~ 158 (470)
+..|.. ...+..+||.|++.+|..+++.|++..-.+|+||||++||||||+|++||+||+|.++..|+||+|||+|+
T Consensus 272 ~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~ 351 (567)
T KOG0345|consen 272 GKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARA 351 (567)
T ss_pred HHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhc
Confidence 998874 57899999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeChhhHHHHHHHHHHhCCCccccCCCCHH
Q 012133 159 GKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 196 (470)
Q Consensus 159 g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p~~~ 196 (470)
|+.|.+++|+.+.|..+++.+.-.-....+.+..|...
T Consensus 352 gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~e~~~ 389 (567)
T KOG0345|consen 352 GREGNAIVFLNPREEAYVEFLRIKGKVELERIDTEKAS 389 (567)
T ss_pred cCccceEEEecccHHHHHHHHHhcCccchhhhcccccc
Confidence 99999999999988888887765555566655555443
No 10
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-33 Score=261.59 Aligned_cols=189 Identities=29% Similarity=0.525 Sum_probs=178.1
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
||||||.|-.|+.+..++|++|..|++ .++.++..+.+||..+.+.+|...|..|+..+ .-.+.|||||+...++.
T Consensus 262 llySATFP~tVk~Fm~~~l~kPy~INL---M~eLtl~GvtQyYafV~e~qKvhCLntLfskL-qINQsIIFCNS~~rVEL 337 (459)
T KOG0326|consen 262 LLYSATFPLTVKGFMDRHLKKPYEINL---MEELTLKGVTQYYAFVEERQKVHCLNTLFSKL-QINQSIIFCNSTNRVEL 337 (459)
T ss_pred eEEecccchhHHHHHHHhccCcceeeh---hhhhhhcchhhheeeechhhhhhhHHHHHHHh-cccceEEEeccchHhHH
Confidence 689999999999999999999999998 46677889999999999999999999988776 34689999999999999
Q ss_pred HHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCC
Q 012133 81 VSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 159 (470)
Q Consensus 81 l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g 159 (470)
||+.+.+ ++.|..+|+.|-|++|.+++..|++|.++.|||||.+.||||+++|++|||+|+|++.++|+||+||.||.|
T Consensus 338 LAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFG 417 (459)
T KOG0326|consen 338 LAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFG 417 (459)
T ss_pred HHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCC
Confidence 9999986 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeChhhHHHHHHHHHHhCCCccccCCC
Q 012133 160 KEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 193 (470)
Q Consensus 160 ~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p 193 (470)
..|.+|.|++..++..+..||+.++..+++++..
T Consensus 418 hlGlAInLityedrf~L~~IE~eLGtEI~pip~~ 451 (459)
T KOG0326|consen 418 HLGLAINLITYEDRFNLYRIEQELGTEIKPIPSN 451 (459)
T ss_pred CcceEEEEEehhhhhhHHHHHHHhccccccCCCc
Confidence 9999999999999999999999999999877643
No 11
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-32 Score=255.19 Aligned_cols=194 Identities=30% Similarity=0.508 Sum_probs=171.3
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcC--CCeEEEEeCchHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK--GGKTIVFTQTKRDA 78 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~--~~~~lVF~~t~~~~ 78 (470)
+||||||.+.++++..--...+....+.......+...+.+.|+.++...|...|..+|..+.. ...++||++|..+|
T Consensus 188 LlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~c 267 (442)
T KOG0340|consen 188 LLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTREC 267 (442)
T ss_pred EEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHH
Confidence 6899999999887664333332233333335566778899999999999999999999987754 67999999999999
Q ss_pred HHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCC
Q 012133 79 DEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 157 (470)
Q Consensus 79 ~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR 157 (470)
+.|+..|.. .+.+..+|+.|+|++|...+.+|+++.++||||||||+||+|||.|++|||||+|.++.+|+||+|||+|
T Consensus 268 Q~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtAR 347 (442)
T KOG0340|consen 268 QLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTAR 347 (442)
T ss_pred HHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhc
Confidence 999999986 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEeeChhhHHHHHHHHHHhCCCccccCCCC
Q 012133 158 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV 194 (470)
Q Consensus 158 ~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p~ 194 (470)
+|+.|.++.++++.+.+.+..||+..+.++.+.....
T Consensus 348 AGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~ 384 (442)
T KOG0340|consen 348 AGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQ 384 (442)
T ss_pred ccCCcceEEEechhhHHHHHHHHHHHhcccccccccc
Confidence 9999999999999999999999999999988764443
No 12
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-32 Score=267.33 Aligned_cols=250 Identities=26% Similarity=0.360 Sum_probs=196.2
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
||||||....|++|++..++||..|.+-......++.+++++|+.++..+|+.+|..+|+.+ ...++|||+.|.+++..
T Consensus 250 LLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~sh-lk~K~iVF~SscKqvkf 328 (758)
T KOG0343|consen 250 LLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSH-LKKKSIVFLSSCKQVKF 328 (758)
T ss_pred eeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhc-cccceEEEEehhhHHHH
Confidence 69999999999999999999999999875666778899999999999999999999999887 45899999999999999
Q ss_pred HHHHHhc---CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCC
Q 012133 81 VSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 157 (470)
Q Consensus 81 l~~~l~~---~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR 157 (470)
+++.+.+ ++++..|||.|+|..|..++.+|-..+.-||+|||+++||+|+|.|++||++|.|.++++||||+|||+|
T Consensus 329 ~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR 408 (758)
T KOG0343|consen 329 LYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTAR 408 (758)
T ss_pred HHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhc
Confidence 9998874 7899999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEeeChhh-HHHHHHHHHHhCCCccccCCCCH-HHHHHHHHHHHHHHHcccCccchhhhHHHHHHHHHhhCHH
Q 012133 158 AGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVV-EDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD 235 (470)
Q Consensus 158 ~g~~g~~i~l~~~~~-~~~~~~i~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~l~~~~~~~ 235 (470)
....|.++++++|.+ ..++..|++.. +.+..+.+.+. -.-+...++.++..-..+..-....|..+++.+....+..
T Consensus 409 ~~~~G~sll~L~psEeE~~l~~Lq~k~-I~i~~i~i~~~k~~~i~~~l~~ll~~~~eLk~~aqka~isY~rsi~~~rdK~ 487 (758)
T KOG0343|consen 409 YKERGESLLMLTPSEEEAMLKKLQKKK-IPIKEIKIDPEKLTSIRNKLEALLAKDPELKEYAQKAFISYLRSIYLMRDKR 487 (758)
T ss_pred ccCCCceEEEEcchhHHHHHHHHHHcC-CCHHhhccCHHHhhhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhhccch
Confidence 999999999999988 56666776654 55554433311 1111222222222222222222345555555554432222
Q ss_pred H------HHHHHHHHcCCCCCCC
Q 012133 236 A------LAAALAQLSGFSRPPS 252 (470)
Q Consensus 236 ~------l~~al~~l~~~~~~~~ 252 (470)
. -..|++..+|++..|+
T Consensus 488 ~f~~~~l~~~afa~s~Gl~~~p~ 510 (758)
T KOG0343|consen 488 VFDVEKLDIEAFADSLGLPGTPR 510 (758)
T ss_pred hhcchhccHHHHHHhcCCCCCch
Confidence 1 1456666677665444
No 13
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=4e-32 Score=260.53 Aligned_cols=182 Identities=35% Similarity=0.584 Sum_probs=165.3
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
+|.|||+|+.|++|+..|+++|..+-+ +.-+-.....+++..+...+++|++++..++..+....++||||..+..|+.
T Consensus 402 vmTSATWP~~VrrLa~sY~Kep~~v~v-GsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~ 480 (629)
T KOG0336|consen 402 VMTSATWPEGVRRLAQSYLKEPMIVYV-GSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADH 480 (629)
T ss_pred eeecccCchHHHHHHHHhhhCceEEEe-cccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhh
Confidence 478999999999999999999987743 4444445567888888888889999999999999889999999999999999
Q ss_pred HHHHHh-cCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCC
Q 012133 81 VSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 159 (470)
Q Consensus 81 l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g 159 (470)
|...|. +++.+..|||+-+|.+|+..++.|++|.++||||||+++||||+|+|+||+|||+|.+++.|+||+|||||+|
T Consensus 481 LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaG 560 (629)
T KOG0336|consen 481 LSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAG 560 (629)
T ss_pred ccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCC
Confidence 998887 6899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeChhhHHHHHHHHHHh
Q 012133 160 KEGTAILMFTSSQRRTVRSLERDV 183 (470)
Q Consensus 160 ~~g~~i~l~~~~~~~~~~~i~~~~ 183 (470)
++|+++.|++..+..+.+.|-+.+
T Consensus 561 r~G~sis~lt~~D~~~a~eLI~IL 584 (629)
T KOG0336|consen 561 RTGTSISFLTRNDWSMAEELIQIL 584 (629)
T ss_pred CCcceEEEEehhhHHHHHHHHHHH
Confidence 999999999999988777665443
No 14
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.1e-31 Score=253.31 Aligned_cols=194 Identities=31% Similarity=0.489 Sum_probs=173.8
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcc-cHHHHHHHHHHHHcCCCeEEEEeCchHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT-SKRTILSDLITVYAKGGKTIVFTQTKRDAD 79 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~ 79 (470)
||||||....+.+++.+.+++|..+.+. .+.....+|+++|+.|+.+ +|.++|.+|.... .-++.||||.|++.|.
T Consensus 268 lLFSATf~e~V~~Fa~kivpn~n~i~Lk--~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~-tigqsiIFc~tk~ta~ 344 (477)
T KOG0332|consen 268 LLFSATFVEKVAAFALKIVPNANVIILK--REELALDNIKQLYVLCACRDDKYQALVNLYGLL-TIGQSIIFCHTKATAM 344 (477)
T ss_pred EeeechhHHHHHHHHHHhcCCCceeeee--hhhccccchhhheeeccchhhHHHHHHHHHhhh-hhhheEEEEeehhhHH
Confidence 6899999999999999999999988774 4566678999999998764 8899998876555 3489999999999999
Q ss_pred HHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCC------ChhHHHHHh
Q 012133 80 EVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN------DPETFVHRS 152 (470)
Q Consensus 80 ~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~------~~~~y~qr~ 152 (470)
.|+..|.. ++.|..|||+|.-++|..+++.||.|+.+|||+|+|.+||||++.|++|||||+|. |.++|+||+
T Consensus 345 ~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRi 424 (477)
T KOG0332|consen 345 WLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRI 424 (477)
T ss_pred HHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHh
Confidence 99999984 89999999999999999999999999999999999999999999999999999995 899999999
Q ss_pred cccCCCCCCCeEEEeeChh-hHHHHHHHHHHhCCCccccCCCCHHH
Q 012133 153 GRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFVSPPVVED 197 (470)
Q Consensus 153 GR~gR~g~~g~~i~l~~~~-~~~~~~~i~~~~~~~~~~~~~p~~~~ 197 (470)
|||||.|+.|.+|.|+... ....+..|+++.+.++..+.+...+|
T Consensus 425 GRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E 470 (477)
T KOG0332|consen 425 GRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDE 470 (477)
T ss_pred cccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHH
Confidence 9999999999999998864 56788899999998888877744443
No 15
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.97 E-value=1.1e-30 Score=269.67 Aligned_cols=187 Identities=35% Similarity=0.524 Sum_probs=167.0
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
++||||+|..+..++..++.+|..+.+... ......+.+.++.+....|...|..+++.. ...++||||++++.|+.
T Consensus 194 ~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~--~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~t~~~~~~ 270 (423)
T PRK04837 194 MLFSATLSYRVRELAFEHMNNPEYVEVEPE--QKTGHRIKEELFYPSNEEKMRLLQTLIEEE-WPDRAIIFANTKHRCEE 270 (423)
T ss_pred EEEeccCCHHHHHHHHHHCCCCEEEEEcCC--CcCCCceeEEEEeCCHHHHHHHHHHHHHhc-CCCeEEEEECCHHHHHH
Confidence 589999999999999999999988876432 334456777777777778888888888654 45799999999999999
Q ss_pred HHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCC
Q 012133 81 VSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 159 (470)
Q Consensus 81 l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g 159 (470)
+++.|.. ++.+..+||+|++++|.++++.|++|+++||||||++++|||+|+|++|||||+|.+.++|+||+||+||.|
T Consensus 271 l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G 350 (423)
T PRK04837 271 IWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAG 350 (423)
T ss_pred HHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCC
Confidence 9999984 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeChhhHHHHHHHHHHhCCCcccc
Q 012133 160 KEGTAILMFTSSQRRTVRSLERDVGCKFEFV 190 (470)
Q Consensus 160 ~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~ 190 (470)
+.|.+++|+++.+...+..|++.+...++..
T Consensus 351 ~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~ 381 (423)
T PRK04837 351 ASGHSISLACEEYALNLPAIETYIGHSIPVS 381 (423)
T ss_pred CCeeEEEEeCHHHHHHHHHHHHHhCCCCCCc
Confidence 9999999999999999999998887776543
No 16
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.97 E-value=2.4e-30 Score=269.21 Aligned_cols=186 Identities=38% Similarity=0.580 Sum_probs=166.0
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
|+||||+++++..++.+++.+|..+.+.. .......+.+++..++...+.++|..++... ...++||||++++.++.
T Consensus 184 l~~SAT~~~~~~~l~~~~~~~~~~i~~~~--~~~~~~~i~~~~~~~~~~~k~~~l~~l~~~~-~~~~~lVF~~t~~~~~~ 260 (456)
T PRK10590 184 LLFSATFSDDIKALAEKLLHNPLEIEVAR--RNTASEQVTQHVHFVDKKRKRELLSQMIGKG-NWQQVLVFTRTKHGANH 260 (456)
T ss_pred EEEeCCCcHHHHHHHHHHcCCCeEEEEec--ccccccceeEEEEEcCHHHHHHHHHHHHHcC-CCCcEEEEcCcHHHHHH
Confidence 58999999999999999999998887643 2334566778887777778888887777543 45799999999999999
Q ss_pred HHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCC
Q 012133 81 VSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 159 (470)
Q Consensus 81 l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g 159 (470)
|++.|.+ .+.+..+||+|++++|.++++.|++++++|||||+++++|||+|+|++||||++|.++++|+||+|||||++
T Consensus 261 l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g 340 (456)
T PRK10590 261 LAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAA 340 (456)
T ss_pred HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCC
Confidence 9999985 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeChhhHHHHHHHHHHhCCCccc
Q 012133 160 KEGTAILMFTSSQRRTVRSLERDVGCKFEF 189 (470)
Q Consensus 160 ~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~ 189 (470)
..|.+++|+...+...++.|++.+..+++.
T Consensus 341 ~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~ 370 (456)
T PRK10590 341 ATGEALSLVCVDEHKLLRDIEKLLKKEIPR 370 (456)
T ss_pred CCeeEEEEecHHHHHHHHHHHHHhcCCCcc
Confidence 999999999999999999999888766543
No 17
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=6.5e-31 Score=258.44 Aligned_cols=179 Identities=35% Similarity=0.565 Sum_probs=161.2
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCc---ccHHHHHHHHHHHHcCCCeEEEEeCchHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA---TSKRTILSDLITVYAKGGKTIVFTQTKRD 77 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~---~~k~~~l~~ll~~~~~~~~~lVF~~t~~~ 77 (470)
|||||||..+|++|++-.|++|+.|-+. ....++..+.+.++.+.+ .++..+|..|+... ...++|||+.|++.
T Consensus 362 mLFSATMteeVkdL~slSL~kPvrifvd--~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rt-f~~~~ivFv~tKk~ 438 (691)
T KOG0338|consen 362 MLFSATMTEEVKDLASLSLNKPVRIFVD--PNKDTAPKLTQEFIRIRPKREGDREAMLASLITRT-FQDRTIVFVRTKKQ 438 (691)
T ss_pred eeehhhhHHHHHHHHHhhcCCCeEEEeC--CccccchhhhHHHheeccccccccHHHHHHHHHHh-cccceEEEEehHHH
Confidence 6999999999999999999999999874 445566777777776543 36778888888765 35899999999999
Q ss_pred HHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccC
Q 012133 78 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 156 (470)
Q Consensus 78 ~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~g 156 (470)
|..+.-+|-- ++.+.-|||.|+|.+|...+++|++.+++||||||+++|||||+.|..||||++|.+.+.|+||+|||+
T Consensus 439 AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTA 518 (691)
T KOG0338|consen 439 AHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTA 518 (691)
T ss_pred HHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhh
Confidence 9999888763 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEeeChhhHHHHHHHHHH
Q 012133 157 RAGKEGTAILMFTSSQRRTVRSLERD 182 (470)
Q Consensus 157 R~g~~g~~i~l~~~~~~~~~~~i~~~ 182 (470)
|+|+.|.+++|+...++..++.|-+.
T Consensus 519 RAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 519 RAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred hcccCcceEEEeccccHHHHHHHHhh
Confidence 99999999999999999999988766
No 18
>PTZ00110 helicase; Provisional
Probab=99.97 E-value=4.9e-30 Score=271.28 Aligned_cols=184 Identities=34% Similarity=0.545 Sum_probs=161.1
Q ss_pred CEEeecCCHHHHHHHHHHcC-CCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHc-CCCeEEEEeCchHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDA 78 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~-~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~-~~~~~lVF~~t~~~~ 78 (470)
|+||||+|++++.+++.++. +|..+.+... .......+++.++.+....|...|..++.... ...++||||+|++.|
T Consensus 312 l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~-~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a 390 (545)
T PTZ00110 312 LMWSATWPKEVQSLARDLCKEEPVHVNVGSL-DLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGA 390 (545)
T ss_pred EEEEeCCCHHHHHHHHHHhccCCEEEEECCC-ccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHH
Confidence 58999999999999999886 5777765322 22344667777777777788888888887654 567999999999999
Q ss_pred HHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCC
Q 012133 79 DEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 157 (470)
Q Consensus 79 ~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR 157 (470)
+.|++.|.. ++.+..+||+|++++|+.+++.|++++++||||||++++|||||+|++|||||+|.++++|+||+|||||
T Consensus 391 ~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR 470 (545)
T PTZ00110 391 DFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGR 470 (545)
T ss_pred HHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhccccc
Confidence 999999984 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEeeChhhHHHHHHHHHHhCC
Q 012133 158 AGKEGTAILMFTSSQRRTVRSLERDVGC 185 (470)
Q Consensus 158 ~g~~g~~i~l~~~~~~~~~~~i~~~~~~ 185 (470)
+|+.|.+++|+++.+...++.|.+.+..
T Consensus 471 ~G~~G~ai~~~~~~~~~~~~~l~~~l~~ 498 (545)
T PTZ00110 471 AGAKGASYTFLTPDKYRLARDLVKVLRE 498 (545)
T ss_pred CCCCceEEEEECcchHHHHHHHHHHHHH
Confidence 9999999999999888777777666543
No 19
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.97 E-value=6.1e-30 Score=271.56 Aligned_cols=185 Identities=34% Similarity=0.513 Sum_probs=164.0
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
|+||||++..+..++..++.+|..+.+.. .......+.++++.+...+|..+|..++... ...++||||+|++.++.
T Consensus 196 ll~SATl~~~v~~l~~~~l~~p~~i~v~~--~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~-~~~k~LVF~nt~~~ae~ 272 (572)
T PRK04537 196 LLFSATLSHRVLELAYEHMNEPEKLVVET--ETITAARVRQRIYFPADEEKQTLLLGLLSRS-EGARTMVFVNTKAFVER 272 (572)
T ss_pred EEEeCCccHHHHHHHHHHhcCCcEEEecc--ccccccceeEEEEecCHHHHHHHHHHHHhcc-cCCcEEEEeCCHHHHHH
Confidence 58999999999999999999987775532 2234556777777777778888887777653 56799999999999999
Q ss_pred HHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCC
Q 012133 81 VSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 159 (470)
Q Consensus 81 l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g 159 (470)
|++.|.+ ++.+..||++|++.+|+++++.|++++++||||||++++|||+|+|++|||||+|.++++|+||+||+||.|
T Consensus 273 l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G 352 (572)
T PRK04537 273 VARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLG 352 (572)
T ss_pred HHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCC
Confidence 9999985 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeChhhHHHHHHHHHHhCCCcc
Q 012133 160 KEGTAILMFTSSQRRTVRSLERDVGCKFE 188 (470)
Q Consensus 160 ~~g~~i~l~~~~~~~~~~~i~~~~~~~~~ 188 (470)
+.|.+++|+.+.+...+..|++.+..+++
T Consensus 353 ~~G~ai~~~~~~~~~~l~~i~~~~~~~~~ 381 (572)
T PRK04537 353 EEGDAISFACERYAMSLPDIEAYIEQKIP 381 (572)
T ss_pred CCceEEEEecHHHHHHHHHHHHHHcCCCC
Confidence 99999999999988888888888776654
No 20
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.1e-29 Score=243.42 Aligned_cols=187 Identities=34% Similarity=0.608 Sum_probs=174.5
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
+|||||+|.|+..+.++|+.+|..|.+. .+..+.+.++++|+.+..+.|+..|.++.+ .-.+.+|||||++.++.
T Consensus 204 ~l~SAT~p~~vl~vt~~f~~~pv~i~vk--k~~ltl~gikq~~i~v~k~~k~~~l~dl~~---~~~q~~if~nt~r~v~~ 278 (397)
T KOG0327|consen 204 VLLSATMPSDVLEVTKKFMREPVRILVK--KDELTLEGIKQFYINVEKEEKLDTLCDLYR---RVTQAVIFCNTRRKVDN 278 (397)
T ss_pred eeecccCcHHHHHHHHHhccCceEEEec--chhhhhhheeeeeeeccccccccHHHHHHH---hhhcceEEecchhhHHH
Confidence 5899999999999999999999999875 344668899999999988889999888887 34789999999999999
Q ss_pred HHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCC
Q 012133 81 VSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 159 (470)
Q Consensus 81 l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g 159 (470)
|...|.. .+.+.++|++|.+.+|..+++.|+.|..+|||+|+.++||||+.++++||||++|...++|+||+||+||.|
T Consensus 279 l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~g 358 (397)
T KOG0327|consen 279 LTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFG 358 (397)
T ss_pred HHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccC
Confidence 9999974 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeChhhHHHHHHHHHHhCCCccccCC
Q 012133 160 KEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 192 (470)
Q Consensus 160 ~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~ 192 (470)
++|.++.+++..+...++++++++...++.++.
T Consensus 359 rkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~ 391 (397)
T KOG0327|consen 359 RKGVAINFVTEEDVRDLKDIEKFYNTPIEELPS 391 (397)
T ss_pred CCceeeeeehHhhHHHHHhHHHhcCCcceeccc
Confidence 999999999999999999999999998887654
No 21
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.1e-29 Score=251.30 Aligned_cols=179 Identities=41% Similarity=0.651 Sum_probs=156.3
Q ss_pred CEEeecCCHHHHHHHHHHcCC-CcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHc---CCC-----eEEEE
Q 012133 1 MLFSATMPSWVKKLSRKYLDN-PLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA---KGG-----KTIVF 71 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~-p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~---~~~-----~~lVF 71 (470)
+|||||.|+++..++..|+.+ ...+.+. ..-....++.+..+.+...+|...|.++|.... ... +++||
T Consensus 266 ~mFSAtfp~~iq~l~~~fl~~~yi~laV~--rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvF 343 (482)
T KOG0335|consen 266 LLFSATFPKEIQRLAADFLKDNYIFLAVG--RVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVF 343 (482)
T ss_pred EEEeccCChhhhhhHHHHhhccceEEEEe--eeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEE
Confidence 589999999999999999986 5555543 334557888888888988888888888886443 233 89999
Q ss_pred eCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHH
Q 012133 72 TQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 150 (470)
Q Consensus 72 ~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~q 150 (470)
|.|++.|.+|+..|.. .+++..+|++.+|.+|.++++.|+++++.|||||+|++||||||+|+||||||+|.+..+|+|
T Consensus 344 vEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvH 423 (482)
T KOG0335|consen 344 VETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVH 423 (482)
T ss_pred eeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHH
Confidence 9999999999999985 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCCCCeEEEeeChhhHHHHHHHHH
Q 012133 151 RSGRTGRAGKEGTAILMFTSSQRRTVRSLER 181 (470)
Q Consensus 151 r~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~ 181 (470)
|+|||||+|..|.++.|+........+.|.+
T Consensus 424 RIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~ 454 (482)
T KOG0335|consen 424 RIGRTGRVGNGGRATSFFNEKNQNIAKALVE 454 (482)
T ss_pred hccccccCCCCceeEEEeccccchhHHHHHH
Confidence 9999999999999999999655444444433
No 22
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.96 E-value=6.8e-29 Score=261.71 Aligned_cols=183 Identities=27% Similarity=0.435 Sum_probs=160.4
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHc-CCCeEEEEeCchHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDAD 79 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~-~~~~~lVF~~t~~~~~ 79 (470)
|+||||+|++++.+++.++.++..|.+.. .......+.+..+.+....|...|.+++.... ...++||||+++..++
T Consensus 304 l~~SATl~~~v~~l~~~~~~~~~~i~~~~--~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~ 381 (518)
T PLN00206 304 LLFSATVSPEVEKFASSLAKDIILISIGN--PNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGAD 381 (518)
T ss_pred EEEEeeCCHHHHHHHHHhCCCCEEEEeCC--CCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHH
Confidence 58999999999999999999998887643 23345567777777877778777777776542 2368999999999999
Q ss_pred HHHHHHhc--CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCC
Q 012133 80 EVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 157 (470)
Q Consensus 80 ~l~~~l~~--~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR 157 (470)
.|++.|.. .+.+..+||+|++++|..+++.|++|+++|||||+++++|||+|+|++|||||+|.++++|+||+|||||
T Consensus 382 ~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR 461 (518)
T PLN00206 382 LLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASR 461 (518)
T ss_pred HHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhcccccc
Confidence 99999973 6889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEeeChhhHHHHHHHHHHhCC
Q 012133 158 AGKEGTAILMFTSSQRRTVRSLERDVGC 185 (470)
Q Consensus 158 ~g~~g~~i~l~~~~~~~~~~~i~~~~~~ 185 (470)
.|+.|.+++|+++.+...+..|.+.+..
T Consensus 462 ~g~~G~ai~f~~~~~~~~~~~l~~~l~~ 489 (518)
T PLN00206 462 MGEKGTAIVFVNEEDRNLFPELVALLKS 489 (518)
T ss_pred CCCCeEEEEEEchhHHHHHHHHHHHHHH
Confidence 9999999999999888777777766543
No 23
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.96 E-value=4e-30 Score=245.32 Aligned_cols=168 Identities=32% Similarity=0.554 Sum_probs=140.7
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
||||||||..|+.+++.-+-.|+.|++-. . -..+-++.+..-.+..+.|+-.|..+|.. ...++||||..+.+++.
T Consensus 361 LLFSATMP~KIQ~FAkSALVKPvtvNVGR-A-GAAsldViQevEyVkqEaKiVylLeCLQK--T~PpVLIFaEkK~DVD~ 436 (610)
T KOG0341|consen 361 LLFSATMPKKIQNFAKSALVKPVTVNVGR-A-GAASLDVIQEVEYVKQEAKIVYLLECLQK--TSPPVLIFAEKKADVDD 436 (610)
T ss_pred eeeeccccHHHHHHHHhhcccceEEeccc-c-cccchhHHHHHHHHHhhhhhhhHHHHhcc--CCCceEEEeccccChHH
Confidence 69999999999999999999999998742 1 12222222222223344555444444432 35799999999999999
Q ss_pred HHHHHh-cCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCC
Q 012133 81 VSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 159 (470)
Q Consensus 81 l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g 159 (470)
+.++|- +++.+..+||+-+|++|...++.|+.|+-+|||||||++.|+|+|++.||||||+|.++++|+||+|||||.|
T Consensus 437 IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg 516 (610)
T KOG0341|consen 437 IHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSG 516 (610)
T ss_pred HHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCC
Confidence 999987 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeChhh
Q 012133 160 KEGTAILMFTSSQ 172 (470)
Q Consensus 160 ~~g~~i~l~~~~~ 172 (470)
++|.+.+|+....
T Consensus 517 ~~GiATTfINK~~ 529 (610)
T KOG0341|consen 517 KTGIATTFINKNQ 529 (610)
T ss_pred Ccceeeeeecccc
Confidence 9999999988743
No 24
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.96 E-value=1.9e-28 Score=254.00 Aligned_cols=185 Identities=30% Similarity=0.535 Sum_probs=161.7
Q ss_pred CEEeecCCH-HHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCc-ccHHHHHHHHHHHHcCCCeEEEEeCchHHH
Q 012133 1 MLFSATMPS-WVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLITVYAKGGKTIVFTQTKRDA 78 (470)
Q Consensus 1 llfSATlp~-~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~ 78 (470)
|+||||++. .+..+++.++.+|..+.+... ......+.++++.+.. ..|.++|..+++.. ...++||||++++.+
T Consensus 182 ~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~-~~~~~lVF~~s~~~~ 258 (434)
T PRK11192 182 LLFSATLEGDAVQDFAERLLNDPVEVEAEPS--RRERKKIHQWYYRADDLEHKTALLCHLLKQP-EVTRSIVFVRTRERV 258 (434)
T ss_pred EEEEeecCHHHHHHHHHHHccCCEEEEecCC--cccccCceEEEEEeCCHHHHHHHHHHHHhcC-CCCeEEEEeCChHHH
Confidence 589999985 588899999999988876432 3334567777766653 57888888887643 457999999999999
Q ss_pred HHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCC
Q 012133 79 DEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 157 (470)
Q Consensus 79 ~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR 157 (470)
+.+++.|.. ++.+..+||+|++.+|..+++.|++|+++||||||++++|||+|+|++|||||+|.+.+.|+||+|||||
T Consensus 259 ~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR 338 (434)
T PRK11192 259 HELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGR 338 (434)
T ss_pred HHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhccccccc
Confidence 999999985 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEeeChhhHHHHHHHHHHhCCCcc
Q 012133 158 AGKEGTAILMFTSSQRRTVRSLERDVGCKFE 188 (470)
Q Consensus 158 ~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~ 188 (470)
+|..|.+++|++..+...+..+++++...+.
T Consensus 339 ~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~ 369 (434)
T PRK11192 339 AGRKGTAISLVEAHDHLLLGKIERYIEEPLK 369 (434)
T ss_pred CCCCceEEEEecHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999887765543
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=3.3e-28 Score=254.68 Aligned_cols=185 Identities=33% Similarity=0.570 Sum_probs=165.2
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
|+||||++..+.++++.++.+|..+.+... ......+.++.+.+...+|..+|..++... ...++||||++++.++.
T Consensus 274 i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~IVF~~s~~~~~~ 350 (475)
T PRK01297 274 LLFSATFTDDVMNLAKQWTTDPAIVEIEPE--NVASDTVEQHVYAVAGSDKYKLLYNLVTQN-PWERVMVFANRKDEVRR 350 (475)
T ss_pred EEEEeecCHHHHHHHHHhccCCEEEEeccC--cCCCCcccEEEEEecchhHHHHHHHHHHhc-CCCeEEEEeCCHHHHHH
Confidence 579999999999999999999988876432 333455666667777778888888887653 45799999999999999
Q ss_pred HHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCC
Q 012133 81 VSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 159 (470)
Q Consensus 81 l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g 159 (470)
+++.|.+ ++.+..+||+|++++|.++++.|++|+++|||||+++++|||||+|++||+|++|.+..+|+||+||+||.|
T Consensus 351 l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g 430 (475)
T PRK01297 351 IEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAG 430 (475)
T ss_pred HHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCC
Confidence 9999985 788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeChhhHHHHHHHHHHhCCCcc
Q 012133 160 KEGTAILMFTSSQRRTVRSLERDVGCKFE 188 (470)
Q Consensus 160 ~~g~~i~l~~~~~~~~~~~i~~~~~~~~~ 188 (470)
+.|.+++|+...+...+..+++.++.+++
T Consensus 431 ~~g~~i~~~~~~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 431 ASGVSISFAGEDDAFQLPEIEELLGRKIS 459 (475)
T ss_pred CCceEEEEecHHHHHHHHHHHHHhCCCCc
Confidence 99999999999998999999999887764
No 26
>PTZ00424 helicase 45; Provisional
Probab=99.96 E-value=1.1e-27 Score=245.91 Aligned_cols=190 Identities=33% Similarity=0.582 Sum_probs=164.7
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCc-ccHHHHHHHHHHHHcCCCeEEEEeCchHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLITVYAKGGKTIVFTQTKRDAD 79 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~ 79 (470)
|+||||+|.++..+...|+.+|..+.+.. .......+.++++.+.. ..+...+..++... ...++||||+|++.++
T Consensus 205 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ivF~~t~~~~~ 281 (401)
T PTZ00424 205 ALFSATMPNEILELTTKFMRDPKRILVKK--DELTLEGIRQFYVAVEKEEWKFDTLCDLYETL-TITQAIIYCNTRRKVD 281 (401)
T ss_pred EEEEecCCHHHHHHHHHHcCCCEEEEeCC--CCcccCCceEEEEecChHHHHHHHHHHHHHhc-CCCeEEEEecCcHHHH
Confidence 57999999999999999999988776532 22334567777776654 34566666666544 4578999999999999
Q ss_pred HHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCC
Q 012133 80 EVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 158 (470)
Q Consensus 80 ~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~ 158 (470)
.+++.|.. .+.+..+||+|++++|..++++|++|+++|||||+++++|||+|++++||+|++|.+..+|+||+||+||.
T Consensus 282 ~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~ 361 (401)
T PTZ00424 282 YLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRF 361 (401)
T ss_pred HHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccC
Confidence 99999985 68899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeChhhHHHHHHHHHHhCCCccccCCC
Q 012133 159 GKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 193 (470)
Q Consensus 159 g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p 193 (470)
|+.|.|++|+++.+...++.+++.+...++..++.
T Consensus 362 g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~ 396 (401)
T PTZ00424 362 GRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPME 396 (401)
T ss_pred CCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcc
Confidence 99999999999999999999999998877765443
No 27
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1.6e-27 Score=231.02 Aligned_cols=182 Identities=25% Similarity=0.459 Sum_probs=164.6
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
+|||||+.+.|..+.+.++++|+.+.+...+ -..+..+.||++.|..++|..+|..+++..--.+++|||+||.+.|..
T Consensus 205 ~LmSATl~dDv~~LKkL~l~nPviLkl~e~e-l~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~Yr 283 (569)
T KOG0346|consen 205 FLMSATLSDDVQALKKLFLHNPVILKLTEGE-LPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYR 283 (569)
T ss_pred eeehhhhhhHHHHHHHHhccCCeEEEecccc-CCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHH
Confidence 5899999999999999999999999886443 335688999999999999999999888765567999999999999999
Q ss_pred HHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-----------------------------------cc
Q 012133 81 VSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----------------------------------VA 124 (470)
Q Consensus 81 l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-----------------------------------v~ 124 (470)
|.-.|+. +++..+|.+.||..-|..++++|..|.++|||||| -+
T Consensus 284 LkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GV 363 (569)
T KOG0346|consen 284 LKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGV 363 (569)
T ss_pred HHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhch
Confidence 9999986 79999999999999999999999999999999999 24
Q ss_pred cccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHh
Q 012133 125 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 183 (470)
Q Consensus 125 ~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~ 183 (470)
+||||+.+|..|||+|+|.++.+||||+|||+|++++|.++.|+.+.+..-...|++.+
T Consensus 364 sRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~ 422 (569)
T KOG0346|consen 364 SRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESIL 422 (569)
T ss_pred hccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHH
Confidence 69999999999999999999999999999999999999999999999887555555544
No 28
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1.8e-28 Score=243.32 Aligned_cols=183 Identities=34% Similarity=0.520 Sum_probs=152.8
Q ss_pred CCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCC
Q 012133 20 DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 98 (470)
Q Consensus 20 ~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~ 98 (470)
.+|..|++. ....+...+..-.+.|+..+|.-.|..+|..| ++++|||||+.+.+..|+-+|.. .+...+||+.|
T Consensus 422 ~kpkiiD~t--~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M 497 (731)
T KOG0347|consen 422 GKPKIIDLT--PQSATASTLTESLIECPPLEKDLYLYYFLTRY--PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASM 497 (731)
T ss_pred CCCeeEecC--cchhHHHHHHHHhhcCCccccceeEEEEEeec--CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHH
Confidence 467778775 33445555655666676666665555666554 68999999999999999999986 78999999999
Q ss_pred CHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHH
Q 012133 99 SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178 (470)
Q Consensus 99 ~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~ 178 (470)
.|++|.+.+++|++....||||||||+||||||.|+|||||.+|.+.+.|+||+|||+|++..|..++|+.|.+...+++
T Consensus 498 ~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~K 577 (731)
T KOG0347|consen 498 IQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKK 577 (731)
T ss_pred HHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCccccCCCCHHHHHHHHHHHH
Q 012133 179 LERDVGCKFEFVSPPVVEDVLESSAEQV 206 (470)
Q Consensus 179 i~~~~~~~~~~~~~p~~~~~~~~~~~~~ 206 (470)
|.+.+..+...-..|....++....+++
T Consensus 578 L~ktL~k~~dlpifPv~~~~m~~lkeRv 605 (731)
T KOG0347|consen 578 LCKTLKKKEDLPIFPVETDIMDALKERV 605 (731)
T ss_pred HHHHHhhccCCCceeccHHHHHHHHHHH
Confidence 9888876655444555555555554444
No 29
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=3.9e-27 Score=233.13 Aligned_cols=184 Identities=29% Similarity=0.445 Sum_probs=156.8
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeeccc-----------------------ccccccceEEEEEEcCcccHHHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ-----------------------DEKLAEGIKLYAISTTATSKRTILSD 57 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~-----------------------~~~~~~~i~~~~~~~~~~~k~~~l~~ 57 (470)
||+||||.+-|.+|+.--|+||+.|.+.... .-.++..+.+.|+.+|..-++-.|..
T Consensus 335 mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa 414 (708)
T KOG0348|consen 335 MLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAA 414 (708)
T ss_pred HhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHH
Confidence 5899999999999999999999999821100 02234566788999998888777777
Q ss_pred HHHHH---cCCCeEEEEeCchHHHHHHHHHHhcC-----------------------CcEEEEeCCCCHHHHHHHHcccc
Q 012133 58 LITVY---AKGGKTIVFTQTKRDADEVSLALTSI-----------------------IASEALHGDISQHQRERTLNGFR 111 (470)
Q Consensus 58 ll~~~---~~~~~~lVF~~t~~~~~~l~~~l~~~-----------------------~~~~~lhg~~~~~~R~~~~~~f~ 111 (470)
+|... .+..++|||+.+.+.++.-+..|... ..+.-|||.|+|++|..+++.|+
T Consensus 415 ~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs 494 (708)
T KOG0348|consen 415 LLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFS 494 (708)
T ss_pred HHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhc
Confidence 76433 24468999999999999888777531 35788999999999999999999
Q ss_pred cCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhC
Q 012133 112 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 184 (470)
Q Consensus 112 ~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~ 184 (470)
.....||+||||++||||+|+|.+||+||+|.++++|+||+|||+|+|..|.+++|+.|.|.++++.|+.+..
T Consensus 495 ~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~ 567 (708)
T KOG0348|consen 495 HSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHI 567 (708)
T ss_pred cccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcc
Confidence 9888999999999999999999999999999999999999999999999999999999999998888877653
No 30
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.95 E-value=2e-26 Score=250.84 Aligned_cols=213 Identities=19% Similarity=0.271 Sum_probs=158.3
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcC----------------cccHHHHHHHHHHHHcC
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT----------------ATSKRTILSDLITVYAK 64 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~----------------~~~k~~~l~~ll~~~~~ 64 (470)
|+||||+++..+ ++++++..|..+ +.. +........+..+..+ ...+..+|..+++ .
T Consensus 198 i~~SATi~n~~~-~~~~l~g~~~~~-i~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~---~ 270 (742)
T TIGR03817 198 VLASATTADPAA-AASRLIGAPVVA-VTE--DGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVA---E 270 (742)
T ss_pred EEEecCCCCHHH-HHHHHcCCCeEE-ECC--CCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHH---C
Confidence 589999998865 677788877544 221 1111222222222221 1123444444443 4
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc---------CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccE
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 135 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~---------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~ 135 (470)
..++||||+|++.++.++..|.+ ...+..+||+|++++|.+++++|++|++++|||||++++|||||+|++
T Consensus 271 ~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~ 350 (742)
T TIGR03817 271 GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDA 350 (742)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccE
Confidence 57999999999999999998764 256889999999999999999999999999999999999999999999
Q ss_pred EEEecCCCChhHHHHHhcccCCCCCCCeEEEeeC--hhhHHHHHHHHHHhCCCcccc-CCCCHHHHHHHHHHHHHHHHcc
Q 012133 136 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT--SSQRRTVRSLERDVGCKFEFV-SPPVVEDVLESSAEQVVATLNG 212 (470)
Q Consensus 136 VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~--~~~~~~~~~i~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~l~~ 212 (470)
||||++|.+.++|+||+|||||.|+.|.++++.. +.+...+..+++.++..++.. ..|..+.++...+..+...+ .
T Consensus 351 VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~~~~~~n~~il~~hl~~aa~e~-~ 429 (742)
T TIGR03817 351 VVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEATVFDPDNPYVLGPHLCCAAAEL-P 429 (742)
T ss_pred EEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCccceeCCCcHHHHHHHHHHHHhcC-C
Confidence 9999999999999999999999999999999986 456677788888888777653 33556667776665555433 3
Q ss_pred cCccchhhh
Q 012133 213 VHPESVEFF 221 (470)
Q Consensus 213 ~~~~~~~~~ 221 (470)
+..++.+.|
T Consensus 430 l~~~~~~~~ 438 (742)
T TIGR03817 430 LTEADLELF 438 (742)
T ss_pred CChHHHHhh
Confidence 333334444
No 31
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=5.5e-27 Score=230.60 Aligned_cols=177 Identities=34% Similarity=0.536 Sum_probs=152.7
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEc-CcccHHHHHHHHHHHHcCCCeEEEEeCchHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAIST-TATSKRTILSDLITVYAKGGKTIVFTQTKRDAD 79 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~-~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~ 79 (470)
||||||++..|+.+++.+|.+|+.|.... -......|.+....+ ....|+..|..-|......+++|||+.-+..++
T Consensus 405 llFsaTf~~kIe~lard~L~dpVrvVqg~--vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e 482 (731)
T KOG0339|consen 405 LLFSATFKKKIEKLARDILSDPVRVVQGE--VGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAE 482 (731)
T ss_pred EEeeccchHHHHHHHHHHhcCCeeEEEee--hhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHH
Confidence 69999999999999999999999875432 222344555544444 445778777776666667799999999999999
Q ss_pred HHHHHHh-cCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCC
Q 012133 80 EVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 158 (470)
Q Consensus 80 ~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~ 158 (470)
+|+..|. +.+.|..+||+|.|.+|.++|.+|+.....|||+||+++||+|||++..|||||+-.+++.|.||+|||||+
T Consensus 483 ~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRa 562 (731)
T KOG0339|consen 483 EIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRA 562 (731)
T ss_pred HHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccc
Confidence 9999998 689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeChhhHHHHHHH
Q 012133 159 GKEGTAILMFTSSQRRTVRSL 179 (470)
Q Consensus 159 g~~g~~i~l~~~~~~~~~~~i 179 (470)
|..|++++|+++.+..+.-.|
T Consensus 563 g~kGvayTlvTeKDa~fAG~L 583 (731)
T KOG0339|consen 563 GEKGVAYTLVTEKDAEFAGHL 583 (731)
T ss_pred cccceeeEEechhhHHHhhHH
Confidence 999999999999886544333
No 32
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.94 E-value=5.4e-26 Score=242.29 Aligned_cols=216 Identities=17% Similarity=0.268 Sum_probs=161.1
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCc----------ccHHHHHHHHHHHH-cCCCeEE
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA----------TSKRTILSDLITVY-AKGGKTI 69 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~----------~~k~~~l~~ll~~~-~~~~~~l 69 (470)
||||||+|++++.+ +.|+.+|..|.+.+ .+...|+++|+.... ..+..++..+.+.. ...+++|
T Consensus 325 ILmSATl~~dv~~l-~~~~~~p~~I~I~g----rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iL 399 (675)
T PHA02653 325 FLMTATLEDDRDRI-KEFFPNPAFVHIPG----GTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGI 399 (675)
T ss_pred EEEccCCcHhHHHH-HHHhcCCcEEEeCC----CcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEE
Confidence 68999999998877 57899999888742 234567788775431 12333333333222 2346899
Q ss_pred EEeCchHHHHHHHHHHhc---CCcEEEEeCCCCHHHHHHHHccc-ccCCeeEEEecccccccCCCCCccEEEEec---CC
Q 012133 70 VFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGF-RQGKFTVLVATDVAARGLDIPNVDLIIHYE---LP 142 (470)
Q Consensus 70 VF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~R~~~~~~f-~~g~~~iLVaTdv~~~Gidip~v~~VI~~~---~p 142 (470)
||++++.+++.+++.|.+ .+.+.+|||+|++. ++++++| ++++.+||||||+|++|||||+|++||+++ .|
T Consensus 400 VFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p 477 (675)
T PHA02653 400 VFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVP 477 (675)
T ss_pred EEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCC
Confidence 999999999999999985 47899999999985 4667777 689999999999999999999999999998 56
Q ss_pred C---------ChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHHHHHHHccc
Q 012133 143 N---------DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV 213 (470)
Q Consensus 143 ~---------~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~ 213 (470)
. |.++|+||+|||||. ++|.|+.|+++.+.. | ..++....+..++..++..
T Consensus 478 ~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~------------------p-I~ri~~~~L~~~vL~lk~~ 537 (675)
T PHA02653 478 EPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLK------------------P-IKRIDSEFLHNYILYAKYF 537 (675)
T ss_pred CcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhH------------------H-HHHHhHHHHHHHHHHHHHc
Confidence 4 888999999999999 899999999987631 1 2233333345555555555
Q ss_pred CccchhhhHHHHHHHHHhhCHHHHHHHHHHHcCCCC
Q 012133 214 HPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSR 249 (470)
Q Consensus 214 ~~~~~~~~~~~a~~l~~~~~~~~l~~al~~l~~~~~ 249 (470)
.....+.+ +++.++++.+.+|+..|..+..
T Consensus 538 g~~~~~~~------~ldpP~~~~l~~A~~~L~~lga 567 (675)
T PHA02653 538 NLTLPEDL------FVIPSNLDRLRKTEEYIDSFNI 567 (675)
T ss_pred CCCCcccc------cCCCCCHHHHHHHHHHHHHcCC
Confidence 44333222 6778888999998888876654
No 33
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.94 E-value=1.6e-26 Score=251.74 Aligned_cols=238 Identities=18% Similarity=0.264 Sum_probs=178.4
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHH-----HHHHHHHHHHcCCCeEEEEeCch
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR-----TILSDLITVYAKGGKTIVFTQTK 75 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~-----~~l~~ll~~~~~~~~~lVF~~t~ 75 (470)
|+||||++... ...|+.++..|.+.+. ...++++|+.....++. ..+..+++. ..+++|||++++
T Consensus 150 IlmSATl~~~~---l~~~l~~~~vI~~~gr-----~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~ 219 (819)
T TIGR01970 150 LAMSATLDGER---LSSLLPDAPVVESEGR-----SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVFLPGQ 219 (819)
T ss_pred EEEeCCCCHHH---HHHHcCCCcEEEecCc-----ceeeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEEECCH
Confidence 68999999764 4568877777765432 23467778776554442 223333322 358999999999
Q ss_pred HHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCC--------
Q 012133 76 RDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN-------- 143 (470)
Q Consensus 76 ~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~-------- 143 (470)
.+++.+++.|.+ .+.+.+|||+|++++|.++++.|++|+.+||||||++++|||||+|++|||+++|.
T Consensus 220 ~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~ 299 (819)
T TIGR01970 220 AEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKT 299 (819)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccccccccccc
Confidence 999999999975 57899999999999999999999999999999999999999999999999999885
Q ss_pred ----------ChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHHHHHHHccc
Q 012133 144 ----------DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV 213 (470)
Q Consensus 144 ----------~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~ 213 (470)
|..+|+||+||+||. ++|.||.|++..+...+ ..+ ..+||....+..++..+...
T Consensus 300 g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~l---~~~-----------~~PEI~r~~L~~~~L~l~~~ 364 (819)
T TIGR01970 300 GITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQRL---PAQ-----------DEPEILQADLSGLALELAQW 364 (819)
T ss_pred CCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHhh---hcC-----------CCcceeccCcHHHHHHHHHc
Confidence 234689999999999 89999999998764332 211 23455555666666666665
Q ss_pred CccchhhhHHHHHHHHHhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEE
Q 012133 214 HPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268 (470)
Q Consensus 214 ~~~~~~~~~~~a~~l~~~~~~~~l~~al~~l~~~~~~~~~r~l~~~~~~~~~~~~ 268 (470)
...+...| .+++.++.+.+.+|+..|..+.+......++.....|..+++
T Consensus 365 g~~~~~~~-----~~l~~P~~~~i~~a~~~L~~lgald~~~~lT~~G~~~~~lp~ 414 (819)
T TIGR01970 365 GAKDPSDL-----RWLDAPPSVALAAARQLLQRLGALDAQGRLTAHGKAMAALGC 414 (819)
T ss_pred CCCChhhC-----CCCCCcCHHHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCC
Confidence 54444444 567788889999999988877776655566665555555544
No 34
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=2.2e-26 Score=231.34 Aligned_cols=180 Identities=31% Similarity=0.486 Sum_probs=158.3
Q ss_pred EEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcC-cccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 2 lfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
+||||+|..|+++++..+.++..|.+-. .+.....|+|..+.+. ...|+.++.+++..- -..++|||+.+.+.|.+
T Consensus 326 ~FSat~~~~VEE~~~~i~~~~~~vivg~--~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g-~~PP~lIfVQs~eRak~ 402 (593)
T KOG0344|consen 326 LFSATISVYVEEWAELIKSDLKRVIVGL--RNSANETVDQELVFCGSEKGKLLALRQLVASG-FKPPVLIFVQSKERAKQ 402 (593)
T ss_pred hhhccccHHHHHHHHHhhccceeEEEec--chhHhhhhhhhheeeecchhHHHHHHHHHhcc-CCCCeEEEEecHHHHHH
Confidence 6999999999999999999998886642 2233556666655554 457888888888664 45799999999999999
Q ss_pred HHHHHh--cCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCC
Q 012133 81 VSLALT--SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 158 (470)
Q Consensus 81 l~~~l~--~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~ 158 (470)
|.+.|. ..+.+.++||..++.+|++++++||.|+++|||||++++||||+.+|++|||||+|.+..+|+||+||+||+
T Consensus 403 L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRa 482 (593)
T KOG0344|consen 403 LFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRA 482 (593)
T ss_pred HHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCC
Confidence 999994 478999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeChhhHHHHHHHHHHhC
Q 012133 159 GKEGTAILMFTSSQRRTVRSLERDVG 184 (470)
Q Consensus 159 g~~g~~i~l~~~~~~~~~~~i~~~~~ 184 (470)
|+.|.+|+||+.++..+++.+++...
T Consensus 483 g~~g~Aitfytd~d~~~ir~iae~~~ 508 (593)
T KOG0344|consen 483 GRSGKAITFYTDQDMPRIRSIAEVME 508 (593)
T ss_pred CCCcceEEEeccccchhhhhHHHHHH
Confidence 99999999999999888888876653
No 35
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.94 E-value=2.8e-26 Score=250.37 Aligned_cols=238 Identities=18% Similarity=0.239 Sum_probs=181.9
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHH-----HHHHHHHHHcCCCeEEEEeCch
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-----ILSDLITVYAKGGKTIVFTQTK 75 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-----~l~~ll~~~~~~~~~lVF~~t~ 75 (470)
|+||||++.+. ...|+.++..|.+.+. ...++++|+..+..++.+ .|..+++ ...+++|||++++
T Consensus 153 ilmSATl~~~~---l~~~~~~~~~I~~~gr-----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~--~~~g~iLVFlpg~ 222 (812)
T PRK11664 153 LIMSATLDNDR---LQQLLPDAPVIVSEGR-----SFPVERRYQPLPAHQRFDEAVARATAELLR--QESGSLLLFLPGV 222 (812)
T ss_pred EEEecCCCHHH---HHHhcCCCCEEEecCc-----cccceEEeccCchhhhHHHHHHHHHHHHHH--hCCCCEEEEcCCH
Confidence 68999999752 3568877777765432 234777887766555543 2333332 2358999999999
Q ss_pred HHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCC--------
Q 012133 76 RDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN-------- 143 (470)
Q Consensus 76 ~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~-------- 143 (470)
.+++.+++.|.+ .+.+.++||+|++++|.++++.|++|+.+||||||++++|||||+|++|||+++|.
T Consensus 223 ~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~ 302 (812)
T PRK11664 223 GEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKT 302 (812)
T ss_pred HHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccC
Confidence 999999999984 57799999999999999999999999999999999999999999999999988764
Q ss_pred ----------ChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHHHHHHHccc
Q 012133 144 ----------DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV 213 (470)
Q Consensus 144 ----------~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~ 213 (470)
|..+|+||+||+||. .+|.||.|+++.+... +..-..+||+...+..++..+...
T Consensus 303 g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~--------------l~~~~~PEI~r~dL~~~~L~l~~~ 367 (812)
T PRK11664 303 GLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAER--------------AAAQSEPEILHSDLSGLLLELLQW 367 (812)
T ss_pred CcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHhh--------------CccCCCCceeccchHHHHHHHHHc
Confidence 346899999999999 7999999999876422 122334577777888888877776
Q ss_pred CccchhhhHHHHHHHHHhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEE
Q 012133 214 HPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268 (470)
Q Consensus 214 ~~~~~~~~~~~a~~l~~~~~~~~l~~al~~l~~~~~~~~~r~l~~~~~~~~~~~~ 268 (470)
...++..| .+++.++++.+.+|+..|..+.+......++..+..|..+++
T Consensus 368 g~~~~~~~-----~~ld~P~~~~~~~A~~~L~~lgald~~g~lT~~G~~m~~lp~ 417 (812)
T PRK11664 368 GCHDPAQL-----SWLDQPPAAALAAAKRLLQQLGALDGQGRLTARGRKMAALGN 417 (812)
T ss_pred CCCCHHhC-----CCCCCCCHHHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCC
Confidence 54444444 577888889999999998877776655566655555555443
No 36
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=4.2e-25 Score=230.68 Aligned_cols=175 Identities=25% Similarity=0.395 Sum_probs=140.3
Q ss_pred CEEeecCCHHHHHHHHHHc--CCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHH
Q 012133 1 MLFSATMPSWVKKLSRKYL--DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDA 78 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l--~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~ 78 (470)
|+||||+++.+...+...+ .+|..+..... ..++. +.+........+.+..++....+..++||||+|++.+
T Consensus 166 l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~-----r~nl~-~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~ 239 (470)
T TIGR00614 166 MALTATASPSVREDILRQLNLKNPQIFCTSFD-----RPNLY-YEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKS 239 (470)
T ss_pred EEEecCCCHHHHHHHHHHcCCCCCcEEeCCCC-----CCCcE-EEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHH
Confidence 5799999998876555554 35555433211 12332 2222222234444555554333556779999999999
Q ss_pred HHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCC
Q 012133 79 DEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 157 (470)
Q Consensus 79 ~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR 157 (470)
+.+++.|.. ++.+..+|++|++++|.++++.|++++++|||||+++++|||+|+|++||+|++|.+++.|+||+||+||
T Consensus 240 e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR 319 (470)
T TIGR00614 240 EQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGR 319 (470)
T ss_pred HHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCC
Confidence 999999985 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEeeChhhHHHHHHHHH
Q 012133 158 AGKEGTAILMFTSSQRRTVRSLER 181 (470)
Q Consensus 158 ~g~~g~~i~l~~~~~~~~~~~i~~ 181 (470)
.|.++.|++|+++.+...++.+..
T Consensus 320 ~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 320 DGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred CCCCceEEEEechhHHHHHHHHHh
Confidence 999999999999988877777654
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.93 E-value=5.9e-25 Score=239.34 Aligned_cols=176 Identities=19% Similarity=0.251 Sum_probs=138.9
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcc-cHHHHHHHHHHHHcCCCeEEEEeCchHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT-SKRTILSDLITVYAKGGKTIVFTQTKRDAD 79 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~ 79 (470)
|+||||+++.+++.+...+.-...+.+... ....++. |..++.. .....|..++.......+.||||+|++.++
T Consensus 620 lALTATAT~~V~eDI~~~L~l~~~~vfr~S---f~RpNL~--y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E 694 (1195)
T PLN03137 620 LALTATATASVKEDVVQALGLVNCVVFRQS---FNRPNLW--YSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCE 694 (1195)
T ss_pred EEEEecCCHHHHHHHHHHcCCCCcEEeecc---cCccceE--EEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHH
Confidence 579999999988866655542222212111 1123332 2222222 223445555544334568999999999999
Q ss_pred HHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCC
Q 012133 80 EVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 158 (470)
Q Consensus 80 ~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~ 158 (470)
.+++.|.. ++.+.++|++|++++|..++++|++++++|||||+++++|||+|+|++||||++|.+++.|+||+|||||.
T Consensus 695 ~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRD 774 (1195)
T PLN03137 695 KVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRD 774 (1195)
T ss_pred HHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCC
Confidence 99999985 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeChhhHHHHHHHHH
Q 012133 159 GKEGTAILMFTSSQRRTVRSLER 181 (470)
Q Consensus 159 g~~g~~i~l~~~~~~~~~~~i~~ 181 (470)
|.++.|++||...+...++.+..
T Consensus 775 G~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 775 GQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred CCCceEEEEecHHHHHHHHHHHh
Confidence 99999999999988777666654
No 38
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.93 E-value=5.2e-25 Score=234.28 Aligned_cols=181 Identities=34% Similarity=0.563 Sum_probs=166.6
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcC-cccHHHHHHHHHHHHcCCCeEEEEeCchHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATSKRTILSDLITVYAKGGKTIVFTQTKRDAD 79 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~ 79 (470)
+|||||+|..+..++++.++.|+.|.+- ....+...|++....++ ...|+..|..||..+....++||||...+.|+
T Consensus 550 vlfSatfpr~m~~la~~vl~~Pveiiv~--~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d 627 (997)
T KOG0334|consen 550 VLFSATFPRSMEALARKVLKKPVEIIVG--GRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKAD 627 (997)
T ss_pred hhhhhhhhHHHHHHHHHhhcCCeeEEEc--cceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHH
Confidence 5899999999999999999999887654 34556778888888887 77899999999988777899999999999999
Q ss_pred HHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCC
Q 012133 80 EVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 158 (470)
Q Consensus 80 ~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~ 158 (470)
.|.+.|.+ ++.|..|||+.+|.+|..+++.|+++.+.+||||+++++|+|++++.+|||||+|...+.|+||+|||||+
T Consensus 628 ~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgra 707 (997)
T KOG0334|consen 628 ALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRA 707 (997)
T ss_pred HHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccC
Confidence 99999986 78888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeChhhHHHHHHHHHHh
Q 012133 159 GKEGTAILMFTSSQRRTVRSLERDV 183 (470)
Q Consensus 159 g~~g~~i~l~~~~~~~~~~~i~~~~ 183 (470)
|++|.+++|+++.+..+.-.|.+.+
T Consensus 708 grkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 708 GRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred CccceeEEEeChHHhhhHHHHHHHH
Confidence 9999999999998888888888887
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.92 E-value=4.6e-24 Score=228.84 Aligned_cols=172 Identities=20% Similarity=0.382 Sum_probs=137.1
Q ss_pred CEEeecCCHHHHHHHHHHc--CCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHH
Q 012133 1 MLFSATMPSWVKKLSRKYL--DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDA 78 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l--~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~ 78 (470)
|+||||+++.+...+...+ .+|... +... ..+++.+ ..+....+...|..++... ...++||||+|+++|
T Consensus 178 v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~~----~r~nl~~--~v~~~~~~~~~l~~~l~~~-~~~~~IIFc~tr~~~ 249 (607)
T PRK11057 178 MALTATADDTTRQDIVRLLGLNDPLIQ-ISSF----DRPNIRY--TLVEKFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKV 249 (607)
T ss_pred EEEecCCChhHHHHHHHHhCCCCeEEE-ECCC----CCCccee--eeeeccchHHHHHHHHHhc-CCCCEEEEECcHHHH
Confidence 5799999998766444433 355433 2111 1123322 2222233444455555443 557999999999999
Q ss_pred HHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCC
Q 012133 79 DEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 157 (470)
Q Consensus 79 ~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR 157 (470)
+.+++.|.. ++.+..+|++|++++|.++++.|+.++++|||||+++++|||+|+|++||||++|.+.++|+||+||+||
T Consensus 250 e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR 329 (607)
T PRK11057 250 EDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGR 329 (607)
T ss_pred HHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccC
Confidence 999999985 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEeeChhhHHHHHHHH
Q 012133 158 AGKEGTAILMFTSSQRRTVRSLE 180 (470)
Q Consensus 158 ~g~~g~~i~l~~~~~~~~~~~i~ 180 (470)
.|.++.|++|+++.+...++.+.
T Consensus 330 ~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 330 DGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred CCCCceEEEEeCHHHHHHHHHHH
Confidence 99999999999998877776654
No 40
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=6.5e-25 Score=216.07 Aligned_cols=184 Identities=28% Similarity=0.440 Sum_probs=159.6
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeec--ccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVG--NQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDA 78 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~--~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~ 78 (470)
|+||||+...-.++...-+..|..+-+.. ...-.++..+.|+++.+....|.-.+..+|+.. +-.++|+|+++.+.+
T Consensus 364 L~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lcf~~S~~sa 442 (620)
T KOG0350|consen 364 LVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLCFVNSVSSA 442 (620)
T ss_pred hhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEEEecchHHH
Confidence 57999998777777777788886655442 122346778889999888878888888888776 558999999999999
Q ss_pred HHHHHHHh-c----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhc
Q 012133 79 DEVSLALT-S----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 153 (470)
Q Consensus 79 ~~l~~~l~-~----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~G 153 (470)
..|+..|. . .+.+..+.|.++++.|.+.+++|+.|.++||||||+++||||+.+|+.|||||+|.+..+|+||+|
T Consensus 443 ~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~G 522 (620)
T KOG0350|consen 443 NRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAG 522 (620)
T ss_pred HHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhc
Confidence 99999987 2 356778999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCeEEEeeChhhHHHHHHHHHHhCC
Q 012133 154 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 185 (470)
Q Consensus 154 R~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~ 185 (470)
||+|+|+.|.||++++..+...+.++.+....
T Consensus 523 RTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 523 RTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred ccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 99999999999999999998888888777654
No 41
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.92 E-value=1.4e-24 Score=218.86 Aligned_cols=170 Identities=29% Similarity=0.484 Sum_probs=150.4
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcc--------cHHHHHHHHHHHHcCCCeEEEEe
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT--------SKRTILSDLITVYAKGGKTIVFT 72 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~--------~k~~~l~~ll~~~~~~~~~lVF~ 72 (470)
+.||||.|..+.++..+||++|..|.... .......|++|++.++.. .|++.|.++++.+ +-.++||||
T Consensus 203 ~a~SATYp~nLdn~Lsk~mrdp~lVr~n~--~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~i-py~QAlVF~ 279 (980)
T KOG4284|consen 203 AAFSATYPRNLDNLLSKFMRDPALVRFNA--DDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSI-PYVQALVFC 279 (980)
T ss_pred eEEeccCchhHHHHHHHHhcccceeeccc--CCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhC-chHHHHhhh
Confidence 46999999999999999999999998753 334456788888776543 3666777777665 457899999
Q ss_pred CchHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHH
Q 012133 73 QTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 151 (470)
Q Consensus 73 ~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr 151 (470)
+....|+.++.+|. .++.|.+|.|.|+|++|..+++.++.-.++|||+||+.+||||-++|++|||.|+|.+.++|.||
T Consensus 280 ~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HR 359 (980)
T KOG4284|consen 280 DQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHR 359 (980)
T ss_pred hhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHH
Confidence 99999999999998 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCeEEEeeChhhH
Q 012133 152 SGRTGRAGKEGTAILMFTSSQR 173 (470)
Q Consensus 152 ~GR~gR~g~~g~~i~l~~~~~~ 173 (470)
+||+||.|..|.+++|+...+.
T Consensus 360 IGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 360 IGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred hhhcccccccceeEEEeccchh
Confidence 9999999999999998876543
No 42
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=6.9e-25 Score=211.91 Aligned_cols=188 Identities=32% Similarity=0.453 Sum_probs=174.2
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
+|||||+|..+.++++.-+.+|..|.+. -+.++.+.+++.+..+...+|...|..++...-.+.++|||+.|+..++.
T Consensus 199 llfSatlp~~lv~fakaGl~~p~lVRld--vetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~ 276 (529)
T KOG0337|consen 199 LLFSATLPRDLVDFAKAGLVPPVLVRLD--VETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEY 276 (529)
T ss_pred EEEeccCchhhHHHHHccCCCCceEEee--hhhhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHH
Confidence 5899999999999999999999999864 45667788888999999999999999999777667899999999999999
Q ss_pred HHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCC
Q 012133 81 VSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 159 (470)
Q Consensus 81 l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g 159 (470)
+...|.. ++.+..+++.|++..|..-+.+|+.++..+||.||+++||+|||-.+.|||||+|.+...|+||+||+.|+|
T Consensus 277 ~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~arag 356 (529)
T KOG0337|consen 277 VRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAG 356 (529)
T ss_pred HHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhcc
Confidence 9999985 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeChhhHHHHHHHHHHhCCCcccc
Q 012133 160 KEGTAILMFTSSQRRTVRSLERDVGCKFEFV 190 (470)
Q Consensus 160 ~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~ 190 (470)
+.|.+|.++.+++..++-.|...++..+...
T Consensus 357 rtg~aYs~V~~~~~~yl~DL~lflgr~~~~~ 387 (529)
T KOG0337|consen 357 RTGRAYSLVASTDDPYLLDLQLFLGRPLIFA 387 (529)
T ss_pred ccceEEEEEecccchhhhhhhhhcCCceeec
Confidence 9999999999999999999999888776543
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.91 E-value=2.9e-23 Score=222.83 Aligned_cols=173 Identities=23% Similarity=0.406 Sum_probs=141.4
Q ss_pred CEEeecCCHHHHHHHHHHcC--CCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDA 78 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~--~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~ 78 (470)
|+||||+++.+...+...+. ++..+.. .. ..+++. +.......+...|.+++... ...++||||+|++.+
T Consensus 166 i~lTAT~~~~~~~~i~~~l~~~~~~~~~~--~~---~r~nl~--~~v~~~~~~~~~l~~~l~~~-~~~~~IIf~~sr~~~ 237 (591)
T TIGR01389 166 IALTATADAETRQDIRELLRLADANEFIT--SF---DRPNLR--FSVVKKNNKQKFLLDYLKKH-RGQSGIIYASSRKKV 237 (591)
T ss_pred EEEEeCCCHHHHHHHHHHcCCCCCCeEec--CC---CCCCcE--EEEEeCCCHHHHHHHHHHhc-CCCCEEEEECcHHHH
Confidence 57999999998876666664 4433321 11 112332 22223345666667777654 357999999999999
Q ss_pred HHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCC
Q 012133 79 DEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 157 (470)
Q Consensus 79 ~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR 157 (470)
+.+++.|.. ++.+..+|++|++++|..+++.|++++++|||||+++++|||+|+|++||+|++|.+.+.|+||+||+||
T Consensus 238 e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR 317 (591)
T TIGR01389 238 EELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGR 317 (591)
T ss_pred HHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccC
Confidence 999999974 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEeeChhhHHHHHHHHH
Q 012133 158 AGKEGTAILMFTSSQRRTVRSLER 181 (470)
Q Consensus 158 ~g~~g~~i~l~~~~~~~~~~~i~~ 181 (470)
.|+++.|+++|++.+...++.+.+
T Consensus 318 ~G~~~~~il~~~~~d~~~~~~~i~ 341 (591)
T TIGR01389 318 DGLPAEAILLYSPADIALLKRRIE 341 (591)
T ss_pred CCCCceEEEecCHHHHHHHHHHHh
Confidence 999999999999988777666543
No 44
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.90 E-value=1.3e-23 Score=233.62 Aligned_cols=221 Identities=18% Similarity=0.325 Sum_probs=164.6
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCccc---HHHHHHHHHH---HH--cCCCeEEEEe
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS---KRTILSDLIT---VY--AKGGKTIVFT 72 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~---k~~~l~~ll~---~~--~~~~~~lVF~ 72 (470)
|+||||++.+ .+++.|.+.| .|.+.+.. ..++++|....... +.+.+..++. .+ ...+++|||+
T Consensus 222 ILmSATid~e--~fs~~F~~ap-vI~V~Gr~-----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFL 293 (1294)
T PRK11131 222 IITSATIDPE--RFSRHFNNAP-IIEVSGRT-----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFM 293 (1294)
T ss_pred EEeeCCCCHH--HHHHHcCCCC-EEEEcCcc-----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEc
Confidence 6899999854 5666555444 56664321 23566776654321 2333333332 21 3457899999
Q ss_pred CchHHHHHHHHHHhc-CC---cEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEec--------
Q 012133 73 QTKRDADEVSLALTS-II---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE-------- 140 (470)
Q Consensus 73 ~t~~~~~~l~~~l~~-~~---~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~-------- 140 (470)
+++.+++.+++.|.+ .+ .+.+|||+|++++|.++++. .+..+||||||++++|||||+|++||+++
T Consensus 294 pg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd 371 (1294)
T PRK11131 294 SGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYS 371 (1294)
T ss_pred CCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccc
Confidence 999999999999985 33 47899999999999999987 46789999999999999999999999986
Q ss_pred -------CC---CChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHHHHHHH
Q 012133 141 -------LP---NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 210 (470)
Q Consensus 141 -------~p---~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l 210 (470)
+| .|.++|+||+|||||. .+|.||.||+..+...+ . .-+.+||+...+..++..+
T Consensus 372 ~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~~---~-----------~~~~PEIlR~~L~~viL~l 436 (1294)
T PRK11131 372 YRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLSR---P-----------EFTDPEILRTNLASVILQM 436 (1294)
T ss_pred cccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHhh---h-----------cccCCccccCCHHHHHHHH
Confidence 34 4668999999999999 79999999998664322 1 1234567777778888888
Q ss_pred cccCccchhhhHHHHHHHHHhhCHHHHHHHHHHHcCCCCCC
Q 012133 211 NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPP 251 (470)
Q Consensus 211 ~~~~~~~~~~~~~~a~~l~~~~~~~~l~~al~~l~~~~~~~ 251 (470)
+.+...++..| .+++.++++.+..++..|..+.+..
T Consensus 437 k~lgl~di~~F-----~fldpP~~~~i~~al~~L~~LgAld 472 (1294)
T PRK11131 437 TALGLGDIAAF-----PFVEAPDKRNIQDGVRLLEELGAIT 472 (1294)
T ss_pred HHcCCCCccee-----eCCCCCCHHHHHHHHHHHHHCCCCC
Confidence 77766666666 5788888999999999887666553
No 45
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=3.9e-22 Score=209.90 Aligned_cols=165 Identities=19% Similarity=0.179 Sum_probs=134.9
Q ss_pred EeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHH-cCCCeEEEEeCchHHHHHH
Q 012133 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEV 81 (470)
Q Consensus 3 fSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~~lVF~~t~~~~~~l 81 (470)
||||++....++.+.|..+++.|..... ......+.++.++..+|...|.+++... ....++||||+|++.++.|
T Consensus 414 mTGTa~~~~~El~~~y~l~vv~IPt~kp----~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L 489 (656)
T PRK12898 414 MTGTAREVAGELWSVYGLPVVRIPTNRP----SQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERL 489 (656)
T ss_pred ccCcChHHHHHHHHHHCCCeEEeCCCCC----ccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHH
Confidence 8999999988999999888877754221 1222334456666778888888888654 3457899999999999999
Q ss_pred HHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCC---Ccc-----EEEEecCCCChhHHHHHh
Q 012133 82 SLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NVD-----LIIHYELPNDPETFVHRS 152 (470)
Q Consensus 82 ~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip---~v~-----~VI~~~~p~~~~~y~qr~ 152 (470)
++.|.+ ++++..||+++++.+ ..+..|+.+...|+||||+++||+||+ +|. +||+|++|.+...|+||+
T Consensus 490 ~~~L~~~gi~~~~Lhg~~~~rE--~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~ 567 (656)
T PRK12898 490 SALLREAGLPHQVLNAKQDAEE--AAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLA 567 (656)
T ss_pred HHHHHHCCCCEEEeeCCcHHHH--HHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhc
Confidence 999985 899999999966554 444455555567999999999999999 676 999999999999999999
Q ss_pred cccCCCCCCCeEEEeeChhhH
Q 012133 153 GRTGRAGKEGTAILMFTSSQR 173 (470)
Q Consensus 153 GR~gR~g~~g~~i~l~~~~~~ 173 (470)
|||||.|.+|.+++|++..|.
T Consensus 568 GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 568 GRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred ccccCCCCCeEEEEEechhHH
Confidence 999999999999999998663
No 46
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.88 E-value=2.9e-22 Score=223.74 Aligned_cols=238 Identities=16% Similarity=0.279 Sum_probs=170.7
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCc------ccHHHHHHHHHHHH--cCCCeEEEEe
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA------TSKRTILSDLITVY--AKGGKTIVFT 72 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~------~~k~~~l~~ll~~~--~~~~~~lVF~ 72 (470)
|+||||++. ..+++.|...| .|.+.+.. ..++.+|..... .++.+.+..++..+ ...+++|||+
T Consensus 215 IlmSATld~--~~fa~~F~~ap-vI~V~Gr~-----~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFL 286 (1283)
T TIGR01967 215 IITSATIDP--ERFSRHFNNAP-IIEVSGRT-----YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFL 286 (1283)
T ss_pred EEEeCCcCH--HHHHHHhcCCC-EEEECCCc-----ccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeC
Confidence 689999985 45666554444 56654321 234455554322 12334444444322 2458999999
Q ss_pred CchHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCC------
Q 012133 73 QTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP------ 142 (470)
Q Consensus 73 ~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p------ 142 (470)
+++.+++.+++.|.+ .+.+.+|||.|++++|.++++.+. ..+||||||++++|||||+|++||+++++
T Consensus 287 pg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~--~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd 364 (1283)
T TIGR01967 287 PGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS--GRRIVLATNVAETSLTVPGIHYVIDTGTARISRYS 364 (1283)
T ss_pred CCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC--CceEEEeccHHHhccccCCeeEEEeCCCccccccc
Confidence 999999999999984 245889999999999999988753 46999999999999999999999998843
Q ss_pred ------------CChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHHHHHHH
Q 012133 143 ------------NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 210 (470)
Q Consensus 143 ------------~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l 210 (470)
.|.++|+||+||+||.+ +|.||.||+..+...+. . -+.+||+...+..++..+
T Consensus 365 ~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~~~---~-----------~~~PEIlR~~L~~viL~l 429 (1283)
T TIGR01967 365 YRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNSRP---E-----------FTDPEILRTNLASVILQM 429 (1283)
T ss_pred cccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHhhh---h-----------ccCcccccccHHHHHHHH
Confidence 36689999999999996 99999999987643221 1 123467777777888888
Q ss_pred cccCccchhhhHHHHHHHHHhhCHHHHHHHHHHHcCCCCCCCCc---ccccCCCCeEEEEE
Q 012133 211 NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSR---SLINHEQGWVTLQL 268 (470)
Q Consensus 211 ~~~~~~~~~~~~~~a~~l~~~~~~~~l~~al~~l~~~~~~~~~r---~l~~~~~~~~~~~~ 268 (470)
+.....++..| .+++.++.+.+..++..|..+.+..... .++..+..+..+++
T Consensus 430 ~~lg~~di~~f-----~fldpP~~~~i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPl 485 (1283)
T TIGR01967 430 LALRLGDIAAF-----PFIEAPDPRAIRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPV 485 (1283)
T ss_pred HhcCCCCcccc-----cCCCCCCHHHHHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCC
Confidence 77655555555 5778888899999999887766654443 45555544544444
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.88 E-value=1.1e-21 Score=216.18 Aligned_cols=175 Identities=18% Similarity=0.304 Sum_probs=137.3
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
|+||||+++....++...+.++..|..... . ...+++++.... ...+...++..+...++++|||++++.++.
T Consensus 603 L~~SATpiprtl~~~l~g~~d~s~I~~~p~--~--R~~V~t~v~~~~---~~~i~~~i~~el~~g~qv~if~n~i~~~e~ 675 (926)
T TIGR00580 603 LTLSATPIPRTLHMSMSGIRDLSIIATPPE--D--RLPVRTFVMEYD---PELVREAIRRELLRGGQVFYVHNRIESIEK 675 (926)
T ss_pred EEEecCCCHHHHHHHHhcCCCcEEEecCCC--C--ccceEEEEEecC---HHHHHHHHHHHHHcCCeEEEEECCcHHHHH
Confidence 589999888777777667778877764321 1 223555544322 122222334444567899999999999999
Q ss_pred HHHHHhc---CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCC-ChhHHHHHhcccC
Q 012133 81 VSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN-DPETFVHRSGRTG 156 (470)
Q Consensus 81 l~~~l~~---~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~-~~~~y~qr~GR~g 156 (470)
+++.|.+ .+.+..+||+|++++|++++++|++|+++|||||+++++|||+|++++||+++.|. +..+|+||+||+|
T Consensus 676 l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvG 755 (926)
T TIGR00580 676 LATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVG 755 (926)
T ss_pred HHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCC
Confidence 9999986 47899999999999999999999999999999999999999999999999999875 6789999999999
Q ss_pred CCCCCCeEEEeeChh------hHHHHHHHHHH
Q 012133 157 RAGKEGTAILMFTSS------QRRTVRSLERD 182 (470)
Q Consensus 157 R~g~~g~~i~l~~~~------~~~~~~~i~~~ 182 (470)
|.++.|.||+++.+. ....++.|++.
T Consensus 756 R~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 756 RSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred CCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 999999999998643 34445555443
No 48
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.87 E-value=9.8e-22 Score=211.26 Aligned_cols=161 Identities=20% Similarity=0.244 Sum_probs=123.2
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHH-HHH-cCCCeEEEEeCchHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI-TVY-AKGGKTIVFTQTKRDA 78 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll-~~~-~~~~~~lVF~~t~~~~ 78 (470)
||||||+|.++.++++.++.++..+.+.. .......+.++ +.++.+.|+..+...+ ..+ ...+++||||||++.|
T Consensus 209 LLFSAT~p~ei~~l~~~~~~~p~~i~V~~--~~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~A 285 (844)
T TIGR02621 209 VELTATSRTDGPDRTTLLSAEDYKHPVLK--KRLAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHV 285 (844)
T ss_pred EEEecCCCccHHHHHHHHccCCceeeccc--ccccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHH
Confidence 58999999999999999998888777642 23344556654 3444444543333222 222 3457899999999999
Q ss_pred HHHHHHHhcCCcEEEEeCCCCHHHHH-----HHHccccc----CC-------eeEEEecccccccCCCCCccEEEEecCC
Q 012133 79 DEVSLALTSIIASEALHGDISQHQRE-----RTLNGFRQ----GK-------FTVLVATDVAARGLDIPNVDLIIHYELP 142 (470)
Q Consensus 79 ~~l~~~l~~~~~~~~lhg~~~~~~R~-----~~~~~f~~----g~-------~~iLVaTdv~~~Gidip~v~~VI~~~~p 142 (470)
+.+++.|.+.. ...|||+|++.+|+ +++++|++ ++ .+|||||+++++||||+. ++||++..|
T Consensus 286 q~L~~~L~~~g-~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP 363 (844)
T TIGR02621 286 RKVFAKLPKEK-FELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP 363 (844)
T ss_pred HHHHHHHHhcC-CeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC
Confidence 99999998532 28999999999999 88999987 43 689999999999999986 888887766
Q ss_pred CChhHHHHHhcccCCCCCCC-eEEEee
Q 012133 143 NDPETFVHRSGRTGRAGKEG-TAILMF 168 (470)
Q Consensus 143 ~~~~~y~qr~GR~gR~g~~g-~~i~l~ 168 (470)
.++|+||+||++|.|+.+ ..++++
T Consensus 364 --~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 364 --FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred --HHHHHHHhcccCCCCCCCCceEEEE
Confidence 689999999999999753 335554
No 49
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.87 E-value=1e-21 Score=198.67 Aligned_cols=165 Identities=24% Similarity=0.328 Sum_probs=121.8
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEE--EcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAI--STTATSKRTILSDLITVYAKGGKTIVFTQTKRDA 78 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~--~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~ 78 (470)
|+||||+|+.+.++++.+...+.......... .....+.+. ......+...+..+++....+.++||||+|++.+
T Consensus 159 i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~ 235 (358)
T TIGR01587 159 LLMSATLPKFLKEYAEKIGYVEFNEPLDLKEE---RRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRA 235 (358)
T ss_pred EEEecCchHHHHHHHhcCCCcccccCCCCccc---cccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHH
Confidence 58999999888877776544322211110000 001112221 2222356677777777666678999999999999
Q ss_pred HHHHHHHhc-CC--cEEEEeCCCCHHHHHH----HHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHH
Q 012133 79 DEVSLALTS-II--ASEALHGDISQHQRER----TLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 151 (470)
Q Consensus 79 ~~l~~~l~~-~~--~~~~lhg~~~~~~R~~----~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr 151 (470)
+.+++.|.+ .. .+..+||.|++.+|.+ +++.|++++.+|||||+++++||||+ +++||++..| +++|+||
T Consensus 236 ~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr 312 (358)
T TIGR01587 236 QEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQR 312 (358)
T ss_pred HHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHH
Confidence 999999975 33 4999999999999976 48999999999999999999999996 8899998766 7899999
Q ss_pred hcccCCCCCC----CeEEEeeChh
Q 012133 152 SGRTGRAGKE----GTAILMFTSS 171 (470)
Q Consensus 152 ~GR~gR~g~~----g~~i~l~~~~ 171 (470)
+||+||.|+. +.++++....
T Consensus 313 ~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 313 LGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred hccccCCCCCCCCCCeEEEEeecC
Confidence 9999998844 3666666543
No 50
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.87 E-value=6.6e-21 Score=215.75 Aligned_cols=185 Identities=25% Similarity=0.378 Sum_probs=129.4
Q ss_pred HHHHHHcCCCeEEEEeCchHHHHHHHHHHhcC----------------------------------CcEEEEeCCCCHHH
Q 012133 57 DLITVYAKGGKTIVFTQTKRDADEVSLALTSI----------------------------------IASEALHGDISQHQ 102 (470)
Q Consensus 57 ~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~----------------------------------~~~~~lhg~~~~~~ 102 (470)
.++..+....++||||||+..|+.++..|.+. +.+.++||+|++++
T Consensus 236 ~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkee 315 (1490)
T PRK09751 236 GILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQ 315 (1490)
T ss_pred HHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHH
Confidence 44544445689999999999999999988642 12568999999999
Q ss_pred HHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCC-CCCCeEEEeeChhhHHHHH---H
Q 012133 103 RERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA-GKEGTAILMFTSSQRRTVR---S 178 (470)
Q Consensus 103 R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~-g~~g~~i~l~~~~~~~~~~---~ 178 (470)
|..+++.|++|++++||||+.+++||||++|++||||+.|.++.+|+||+||+||. +..+.++++... ....++ .
T Consensus 316 R~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~-r~dlle~~~~ 394 (1490)
T PRK09751 316 RAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRT-RRDLVDSAVI 394 (1490)
T ss_pred HHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCc-HHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999996 333455544332 222222 3
Q ss_pred HHHHhCCCccccCCCCHH-HHHHHHHHHHHHHHcccCccchhhhHHHHHHH--HHhhCHHHHHHHHHHHcC
Q 012133 179 LERDVGCKFEFVSPPVVE-DVLESSAEQVVATLNGVHPESVEFFTPTAQRL--IEEKGTDALAAALAQLSG 246 (470)
Q Consensus 179 i~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~l--~~~~~~~~l~~al~~l~~ 246 (470)
++..+...++.+.+|... +++...+-.++. . ..-..+...+.+... ...++.+.+...|..|.+
T Consensus 395 ve~~l~g~iE~~~~p~nplDVLaqqiva~a~---~-~~~~~d~l~~~vrra~pf~~L~~~~f~~vl~~L~~ 461 (1490)
T PRK09751 395 VECMFAGRLENLTPPHNPLDVLAQQTVAAAA---M-DALQVDEWYSRVRRAAPWKDLPRRVFDATLDMLSG 461 (1490)
T ss_pred HHHHhcCCCCccCCCCChHHHHHHHHHHHHh---c-CCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHhc
Confidence 667777777776666443 455444433322 2 111222222222221 123456677777776664
No 51
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.87 E-value=3.7e-21 Score=211.37 Aligned_cols=163 Identities=17% Similarity=0.243 Sum_probs=141.1
Q ss_pred cHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHh-c-CCcEEEEeCCCCHHHHHHHHcccccC--CeeEEEeccccc
Q 012133 50 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-S-IIASEALHGDISQHQRERTLNGFRQG--KFTVLVATDVAA 125 (470)
Q Consensus 50 ~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~-~-~~~~~~lhg~~~~~~R~~~~~~f~~g--~~~iLVaTdv~~ 125 (470)
.|.+.|.++|+.. ...|+||||++++.+..|++.|. . ++.+..+||+|++.+|.++++.|+++ ..+|||||++++
T Consensus 479 ~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgs 557 (956)
T PRK04914 479 PRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGS 557 (956)
T ss_pred HHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhc
Confidence 4666777777665 46899999999999999999995 3 78999999999999999999999974 599999999999
Q ss_pred ccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCC--CccccCCCCHHHHHHHHH
Q 012133 126 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC--KFEFVSPPVVEDVLESSA 203 (470)
Q Consensus 126 ~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~--~~~~~~~p~~~~~~~~~~ 203 (470)
+|+|++.+++|||||+||+++.|+||+||++|.|+++.+.+++...+....+.|.+.+.. ++....+|+..++.+...
T Consensus 558 eGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~v~~~~~ 637 (956)
T PRK04914 558 EGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGRALYDEFG 637 (956)
T ss_pred cCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999988887776666666777776655 556678889999999888
Q ss_pred HHHHHHHccc
Q 012133 204 EQVVATLNGV 213 (470)
Q Consensus 204 ~~~~~~l~~~ 213 (470)
+++...+...
T Consensus 638 ~~l~~~l~~~ 647 (956)
T PRK04914 638 DELIPYLASP 647 (956)
T ss_pred HHHHHHHhCC
Confidence 8888877554
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.87 E-value=4.2e-21 Score=215.88 Aligned_cols=176 Identities=17% Similarity=0.256 Sum_probs=138.1
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
|+||||+++.+..++..++.++..|...... ...++++...... ..+...++..+...++++||||+++.++.
T Consensus 752 Ll~SATpiprtl~l~~~gl~d~~~I~~~p~~----r~~v~~~~~~~~~---~~~k~~il~el~r~gqv~vf~n~i~~ie~ 824 (1147)
T PRK10689 752 LTLTATPIPRTLNMAMSGMRDLSIIATPPAR----RLAVKTFVREYDS---LVVREAILREILRGGQVYYLYNDVENIQK 824 (1147)
T ss_pred EEEcCCCCHHHHHHHHhhCCCcEEEecCCCC----CCCceEEEEecCc---HHHHHHHHHHHhcCCeEEEEECCHHHHHH
Confidence 6899999888888888888999888653221 1234444433221 12223344444466899999999999999
Q ss_pred HHHHHhc---CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCC-CChhHHHHHhcccC
Q 012133 81 VSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP-NDPETFVHRSGRTG 156 (470)
Q Consensus 81 l~~~l~~---~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p-~~~~~y~qr~GR~g 156 (470)
+++.|.+ .+.+..+||+|++++|++++++|++|+++|||||+++++|||+|+|++||.++.. .+...|+||+||+|
T Consensus 825 la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvG 904 (1147)
T PRK10689 825 AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVG 904 (1147)
T ss_pred HHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccC
Confidence 9999985 4679999999999999999999999999999999999999999999999965443 36678999999999
Q ss_pred CCCCCCeEEEeeCh------hhHHHHHHHHHHh
Q 012133 157 RAGKEGTAILMFTS------SQRRTVRSLERDV 183 (470)
Q Consensus 157 R~g~~g~~i~l~~~------~~~~~~~~i~~~~ 183 (470)
|.++.|.|++++.. .....++.|++..
T Consensus 905 R~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~~ 937 (1147)
T PRK10689 905 RSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLE 937 (1147)
T ss_pred CCCCceEEEEEeCCCcccCHHHHHHHHHHHHhc
Confidence 99999999999854 3355666666553
No 53
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.87 E-value=4.3e-21 Score=198.50 Aligned_cols=174 Identities=25% Similarity=0.413 Sum_probs=138.1
Q ss_pred CEEeecCCHHHHHHHHHHcC--CCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHH--HHcCCCeEEEEeCchH
Q 012133 1 MLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT--VYAKGGKTIVFTQTKR 76 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~--~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~--~~~~~~~~lVF~~t~~ 76 (470)
|.+|||.++.+++-+...|. ++..+...-+ .++|.+..+... +.+.+.+ .|. .....+..||||.|++
T Consensus 170 ~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfd-----RpNi~~~v~~~~-~~~~q~~--fi~~~~~~~~~~GIIYc~sRk 241 (590)
T COG0514 170 LALTATATPRVRDDIREQLGLQDANIFRGSFD-----RPNLALKVVEKG-EPSDQLA--FLATVLPQLSKSGIIYCLTRK 241 (590)
T ss_pred EEEeCCCChHHHHHHHHHhcCCCcceEEecCC-----Cchhhhhhhhcc-cHHHHHH--HHHhhccccCCCeEEEEeeHH
Confidence 46899999998886666554 4444432212 233332222222 2222222 232 1334567899999999
Q ss_pred HHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhccc
Q 012133 77 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 155 (470)
Q Consensus 77 ~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~ 155 (470)
.++.+++.|.. ++.+..+|++|+.++|+.+.++|..++++|+|||.+...|||-|||.+||||++|.++++|.|.+||+
T Consensus 242 ~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRA 321 (590)
T COG0514 242 KVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRA 321 (590)
T ss_pred hHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhc
Confidence 99999999995 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEeeChhhHHHHHHHHHH
Q 012133 156 GRAGKEGTAILMFTSSQRRTVRSLERD 182 (470)
Q Consensus 156 gR~g~~g~~i~l~~~~~~~~~~~i~~~ 182 (470)
||.|.+..|++||.+.+....+.+.+.
T Consensus 322 GRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 322 GRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred cCCCCcceEEEeeccccHHHHHHHHHh
Confidence 999999999999999998777766554
No 54
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.86 E-value=1.2e-20 Score=209.61 Aligned_cols=143 Identities=22% Similarity=0.344 Sum_probs=110.2
Q ss_pred HHHcCCCeEEEEeCchHHHHHHHHHHhcC-------CcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCC
Q 012133 60 TVYAKGGKTIVFTQTKRDADEVSLALTSI-------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 132 (470)
Q Consensus 60 ~~~~~~~~~lVF~~t~~~~~~l~~~l~~~-------~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~ 132 (470)
+......++||||||+..|+.++..|.+. ..+.++||+|++++|..+++.|++|+++|||||+++++|||+|+
T Consensus 279 ~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~ 358 (876)
T PRK13767 279 ELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGY 358 (876)
T ss_pred HHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCC
Confidence 33445689999999999999999999752 56999999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCCChhHHHHHhcccCCC-CCCCeEEEeeChh-h-HHHHHHHHHHhCCCccccCCCC-HHHHHHHH
Q 012133 133 VDLIIHYELPNDPETFVHRSGRTGRA-GKEGTAILMFTSS-Q-RRTVRSLERDVGCKFEFVSPPV-VEDVLESS 202 (470)
Q Consensus 133 v~~VI~~~~p~~~~~y~qr~GR~gR~-g~~g~~i~l~~~~-~-~~~~~~i~~~~~~~~~~~~~p~-~~~~~~~~ 202 (470)
|++||+|+.|.++.+|+||+||+||. +.....+++.... + .+....++......++.+.+|. ..+++...
T Consensus 359 Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~ 432 (876)
T PRK13767 359 IDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLAQH 432 (876)
T ss_pred CcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHH
Confidence 99999999999999999999999986 3434444444332 2 2222233444455555554443 33444433
No 55
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.84 E-value=7.7e-20 Score=198.45 Aligned_cols=163 Identities=20% Similarity=0.305 Sum_probs=122.0
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCch-----
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTK----- 75 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~----- 75 (470)
|+||||+.+....+......++..|+.. +.....+..+++. ...+..++..+.+......+++|||++.
T Consensus 413 L~~SATp~prtl~~~~~g~~~~s~i~~~----p~~r~~i~~~~~~--~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~ 486 (681)
T PRK10917 413 LVMTATPIPRTLAMTAYGDLDVSVIDEL----PPGRKPITTVVIP--DSRRDEVYERIREEIAKGRQAYVVCPLIEESEK 486 (681)
T ss_pred EEEeCCCCHHHHHHHHcCCCceEEEecC----CCCCCCcEEEEeC--cccHHHHHHHHHHHHHcCCcEEEEEcccccccc
Confidence 5899998766554443222233333321 1112234444433 2334444444545555678999999964
Q ss_pred ---HHHHHHHHHHhcC---CcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCC-ChhHH
Q 012133 76 ---RDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN-DPETF 148 (470)
Q Consensus 76 ---~~~~~l~~~l~~~---~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~-~~~~y 148 (470)
..++++++.|.+. +.+..+||+|++++|++++++|++|+++|||||+++++|||+|++++||+++.|. ....|
T Consensus 487 l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~l 566 (681)
T PRK10917 487 LDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQL 566 (681)
T ss_pred hhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHH
Confidence 3456677777753 5799999999999999999999999999999999999999999999999999997 57888
Q ss_pred HHHhcccCCCCCCCeEEEeeC
Q 012133 149 VHRSGRTGRAGKEGTAILMFT 169 (470)
Q Consensus 149 ~qr~GR~gR~g~~g~~i~l~~ 169 (470)
+||+||+||.+.+|.|++++.
T Consensus 567 hQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 567 HQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred HHHhhcccCCCCceEEEEEEC
Confidence 999999999999999999995
No 56
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.83 E-value=1.4e-19 Score=195.00 Aligned_cols=163 Identities=22% Similarity=0.291 Sum_probs=120.1
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCch-----
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTK----- 75 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~----- 75 (470)
|+||||+++....+.....-+...++.. +.....+..+++. ...+..++..+.+......+++|||++.
T Consensus 390 l~~SATp~prtl~l~~~~~l~~~~i~~~----p~~r~~i~~~~~~--~~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~ 463 (630)
T TIGR00643 390 LVMSATPIPRTLALTVYGDLDTSIIDEL----PPGRKPITTVLIK--HDEKDIVYEFIEEEIAKGRQAYVVYPLIEESEK 463 (630)
T ss_pred EEEeCCCCcHHHHHHhcCCcceeeeccC----CCCCCceEEEEeC--cchHHHHHHHHHHHHHhCCcEEEEEcccccccc
Confidence 5899997665443332111122222211 1111234444332 2344444555555555678999999876
Q ss_pred ---HHHHHHHHHHhc---CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCC-ChhHH
Q 012133 76 ---RDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN-DPETF 148 (470)
Q Consensus 76 ---~~~~~l~~~l~~---~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~-~~~~y 148 (470)
..++++++.|.+ .+.+..+||+|++++|.+++++|++|+.+|||||+++++|||+|++++||+++.|. ....|
T Consensus 464 ~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~l 543 (630)
T TIGR00643 464 LDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQL 543 (630)
T ss_pred chHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHH
Confidence 456677777764 46799999999999999999999999999999999999999999999999999987 67889
Q ss_pred HHHhcccCCCCCCCeEEEeeC
Q 012133 149 VHRSGRTGRAGKEGTAILMFT 169 (470)
Q Consensus 149 ~qr~GR~gR~g~~g~~i~l~~ 169 (470)
.||+||+||.+++|.|++++.
T Consensus 544 hQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 544 HQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred HHHhhhcccCCCCcEEEEEEC
Confidence 999999999999999999983
No 57
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=4e-19 Score=191.08 Aligned_cols=165 Identities=19% Similarity=0.222 Sum_probs=129.1
Q ss_pred EeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHH-HcCCCeEEEEeCchHHHHHH
Q 012133 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEV 81 (470)
Q Consensus 3 fSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~-~~~~~~~lVF~~t~~~~~~l 81 (470)
||.|.-.+-.++.+.|--+ ++.+... .+....... -.+.+...+|..+|.+.+.. +....++||||+|++.++.|
T Consensus 369 mTGTa~t~~~e~~~~Y~l~--v~~IPt~-kp~~r~d~~-~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l 444 (790)
T PRK09200 369 MTGTAKTEEKEFFEVYNME--VVQIPTN-RPIIRIDYP-DKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETF 444 (790)
T ss_pred cCCCChHHHHHHHHHhCCc--EEECCCC-CCcccccCC-CeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHH
Confidence 6788766555665555333 2333211 111111111 12334556788888777754 45678999999999999999
Q ss_pred HHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCC---CCcc-----EEEEecCCCChhHHHHHh
Q 012133 82 SLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI---PNVD-----LIIHYELPNDPETFVHRS 152 (470)
Q Consensus 82 ~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidi---p~v~-----~VI~~~~p~~~~~y~qr~ 152 (470)
+..|.+ ++++..||+++++.++..+.+.++.+ +|+||||+++||+|| |+|. +||+|++|.+...|+||+
T Consensus 445 ~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~ 522 (790)
T PRK09200 445 SKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLR 522 (790)
T ss_pred HHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhh
Confidence 999985 89999999999999998888888765 799999999999999 7998 999999999999999999
Q ss_pred cccCCCCCCCeEEEeeChhhH
Q 012133 153 GRTGRAGKEGTAILMFTSSQR 173 (470)
Q Consensus 153 GR~gR~g~~g~~i~l~~~~~~ 173 (470)
|||||.|++|.+++|++..+.
T Consensus 523 GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 523 GRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred ccccCCCCCeeEEEEEcchHH
Confidence 999999999999999998653
No 58
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.82 E-value=1.2e-19 Score=185.77 Aligned_cols=240 Identities=18% Similarity=0.289 Sum_probs=184.7
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHH-HHHHHHHH--cCCCeEEEEeCchHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTI-LSDLITVY--AKGGKTIVFTQTKRD 77 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~-l~~ll~~~--~~~~~~lVF~~t~~~ 77 (470)
|+||||+..+ ..+.|+.+...+.+.+. ...|+.+|...+..+..+. +..+++.+ .+.+.+|||.+..++
T Consensus 199 IimSATlda~---kfS~yF~~a~i~~i~GR-----~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeE 270 (674)
T KOG0922|consen 199 IIMSATLDAE---KFSEYFNNAPILTIPGR-----TFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEE 270 (674)
T ss_pred EEEeeeecHH---HHHHHhcCCceEeecCC-----CCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHH
Confidence 6899999854 45567777667777543 2456778877666666543 33344433 466899999999999
Q ss_pred HHHHHHHHhcC---C------cEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEec--------
Q 012133 78 ADEVSLALTSI---I------ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE-------- 140 (470)
Q Consensus 78 ~~~l~~~l~~~---~------~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~-------- 140 (470)
++.+++.|.+. . .+.++|+.||.+++.++++.-..|..+|++||++++..|.||.|.+||+.+
T Consensus 271 Ie~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~ 350 (674)
T KOG0922|consen 271 IEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYN 350 (674)
T ss_pred HHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeec
Confidence 99999998742 1 257899999999999999999999999999999999999999999999533
Q ss_pred ----------CCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHHHHHHH
Q 012133 141 ----------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 210 (470)
Q Consensus 141 ----------~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l 210 (470)
.|.|..+-.||+||+||. .+|+||.+|+..+. +.++..+.+|+....+..++..|
T Consensus 351 p~~g~~~L~v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~~~--------------~~~~~~~~PEI~R~~Ls~~vL~L 415 (674)
T KOG0922|consen 351 PRTGLDSLIVVPISKASANQRAGRAGRT-GPGKCYRLYTESAY--------------DKMPLQTVPEIQRVNLSSAVLQL 415 (674)
T ss_pred cccCccceeEEechHHHHhhhcccCCCC-CCceEEEeeeHHHH--------------hhcccCCCCceeeechHHHHHHH
Confidence 356888899999999999 59999999998764 22344556677888888888899
Q ss_pred cccCccchhhhHHHHHHHHHhhCHHHHHHHHHHHcCCCCCCCCccccc-CCCCeEEEEE
Q 012133 211 NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLIN-HEQGWVTLQL 268 (470)
Q Consensus 211 ~~~~~~~~~~~~~~a~~l~~~~~~~~l~~al~~l~~~~~~~~~r~l~~-~~~~~~~~~~ 268 (470)
+.+...++-.| ++++.++++.+.+||..|..+.+..+...++. ....|..+++
T Consensus 416 kalgi~d~l~F-----~f~d~P~~~~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl 469 (674)
T KOG0922|consen 416 KALGINDPLRF-----PFIDPPPPEALEEALEELYSLGALDDRGKLTSPLGRQMAELPL 469 (674)
T ss_pred HhcCCCCcccC-----CCCCCCChHHHHHHHHHHHhcCcccCcCCcCchHHhhhhhcCC
Confidence 98887777777 78889999999999999987666654444444 3334444443
No 59
>PRK02362 ski2-like helicase; Provisional
Probab=99.81 E-value=5.6e-19 Score=194.12 Aligned_cols=119 Identities=28% Similarity=0.474 Sum_probs=102.4
Q ss_pred HHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhcC-------------------------------------CcEEEEe
Q 012133 53 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-------------------------------------IASEALH 95 (470)
Q Consensus 53 ~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~-------------------------------------~~~~~lh 95 (470)
..+..+++.+...+++||||+|++.|+.++..|... ..+..+|
T Consensus 231 ~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hH 310 (737)
T PRK02362 231 DTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHH 310 (737)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeec
Confidence 334444444556789999999999999988877531 2578999
Q ss_pred CCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEE----ec-----CCCChhHHHHHhcccCCCCC--CCeE
Q 012133 96 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE-----LPNDPETFVHRSGRTGRAGK--EGTA 164 (470)
Q Consensus 96 g~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~----~~-----~p~~~~~y~qr~GR~gR~g~--~g~~ 164 (470)
++|++.+|..+++.|++|.++|||||+++++|||+|.+.+||+ || .|.+..+|+||+|||||.|. .|.+
T Consensus 311 agl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ 390 (737)
T PRK02362 311 AGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEA 390 (737)
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceE
Confidence 9999999999999999999999999999999999999999997 76 68899999999999999985 4999
Q ss_pred EEeeChh
Q 012133 165 ILMFTSS 171 (470)
Q Consensus 165 i~l~~~~ 171 (470)
++++...
T Consensus 391 ii~~~~~ 397 (737)
T PRK02362 391 VLLAKSY 397 (737)
T ss_pred EEEecCc
Confidence 9998764
No 60
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.81 E-value=3e-19 Score=192.58 Aligned_cols=238 Identities=19% Similarity=0.274 Sum_probs=183.0
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcc-c-HHHHHHHHHHHH--cCCCeEEEEeCchH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT-S-KRTILSDLITVY--AKGGKTIVFTQTKR 76 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~-~-k~~~l~~ll~~~--~~~~~~lVF~~t~~ 76 (470)
|+||||+..+ -++.|+.+...|.+.+.. ..|+.+|...... . -.+.+...+..+ ...+.+|||.+...
T Consensus 199 IimSATld~~---rfs~~f~~apvi~i~GR~-----fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~ 270 (845)
T COG1643 199 IIMSATLDAE---RFSAYFGNAPVIEIEGRT-----YPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQR 270 (845)
T ss_pred EEEecccCHH---HHHHHcCCCCEEEecCCc-----cceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHH
Confidence 6899999865 345577777778775432 3456666544433 3 344555555444 34689999999999
Q ss_pred HHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEec-----------
Q 012133 77 DADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE----------- 140 (470)
Q Consensus 77 ~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~----------- 140 (470)
+++.+++.|.+ .+.+.+||+.|+.+++.++++.-..++.+|++||+||+.+|.||+|.+||+.+
T Consensus 271 EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~ 350 (845)
T COG1643 271 EIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRT 350 (845)
T ss_pred HHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccccccc
Confidence 99999999985 35689999999999999999999998888999999999999999999999544
Q ss_pred -------CCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHHHHHHHccc
Q 012133 141 -------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV 213 (470)
Q Consensus 141 -------~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~ 213 (470)
.|.|..+..||.||+||. .+|.||-+|+..+.. ..+.-+.+||+...+..++..++..
T Consensus 351 g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~~--------------~~~~~t~PEIlrtdLs~~vL~l~~~ 415 (845)
T COG1643 351 GLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEEDFL--------------AFPEFTLPEILRTDLSGLVLQLKSL 415 (845)
T ss_pred CceeeeEEEechhhhhhhccccccC-CCceEEEecCHHHHH--------------hcccCCChhhhhcchHHHHHHHHhc
Confidence 245788889999999999 599999999985532 2233456799999999999999988
Q ss_pred Ccc-chhhhHHHHHHHHHhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEE
Q 012133 214 HPE-SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 266 (470)
Q Consensus 214 ~~~-~~~~~~~~a~~l~~~~~~~~l~~al~~l~~~~~~~~~r~l~~~~~~~~~~ 266 (470)
... ++..| .+++.++...+.+|+..|..+.+......|+.....|.++
T Consensus 416 G~~~d~~~f-----~fld~P~~~~i~~A~~~L~~LGAld~~g~LT~lG~~ms~l 464 (845)
T COG1643 416 GIGQDIAPF-----PFLDPPPEAAIQAALTLLQELGALDDSGKLTPLGKQMSLL 464 (845)
T ss_pred CCCCCcccC-----ccCCCCChHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHhC
Confidence 774 66666 7788888899999999888776665555555444444433
No 61
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.80 E-value=3.6e-19 Score=172.76 Aligned_cols=167 Identities=31% Similarity=0.489 Sum_probs=132.0
Q ss_pred CEEeecCCH-HHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcc-c-HHHHH----------------------
Q 012133 1 MLFSATMPS-WVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT-S-KRTIL---------------------- 55 (470)
Q Consensus 1 llfSATlp~-~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~-~-k~~~l---------------------- 55 (470)
+++|||+.. +|+.+.++.|.=|..|++.+. ..++.++.|+...+..+ + -..-|
T Consensus 404 ~vCsatlh~feVkk~~ervmhfptwVdLkge--D~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Sp 481 (725)
T KOG0349|consen 404 PVCSATLHIFEVKKVGERVMHFPTWVDLKGE--DLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSP 481 (725)
T ss_pred ceeeeEEeEEEeeehhhhhccCceeEecccc--cccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCC
Confidence 478999864 578889999999999988643 34445554443332211 0 00001
Q ss_pred ------HHHH---------HHHcCCCeEEEEeCchHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHcccccCCee
Q 012133 56 ------SDLI---------TVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFT 116 (470)
Q Consensus 56 ------~~ll---------~~~~~~~~~lVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~ 116 (470)
..|+ +.+ .-.++||||.|+.+|+.|.+.+.+ ++.|.++|++..+.+|.+.++.|+....+
T Consensus 482 e~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvk 560 (725)
T KOG0349|consen 482 ENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVK 560 (725)
T ss_pred CChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeE
Confidence 1111 111 236899999999999999999973 58999999999999999999999999999
Q ss_pred EEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeCh
Q 012133 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 170 (470)
Q Consensus 117 iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~ 170 (470)
.||||||++|||||..+.++||.-+|.+...|+||+||+||+-+-|.+|.|+..
T Consensus 561 flictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat 614 (725)
T KOG0349|consen 561 FLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVAT 614 (725)
T ss_pred EEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeec
Confidence 999999999999999999999999999999999999999999988988887643
No 62
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=3.1e-20 Score=169.10 Aligned_cols=152 Identities=28% Similarity=0.581 Sum_probs=126.8
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
++||||++++|+.++++||+||..|-+. +....+...+++||+......|...|.+||+.+ +-.+++||+.+...
T Consensus 221 mmfsatlskeiRpvC~kFmQdPmEi~vD-dE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~L-eFNQVvIFvKsv~R--- 295 (387)
T KOG0329|consen 221 MMFSATLSKEIRPVCHKFMQDPMEIFVD-DEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVL-EFNQVVIFVKSVQR--- 295 (387)
T ss_pred eeeeeecchhhHHHHHhhhcCchhhhcc-chhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhh-hhcceeEeeehhhh---
Confidence 5899999999999999999999998653 445667889999999999999999999999887 44799999988764
Q ss_pred HHHHHhcCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCC
Q 012133 81 VSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 160 (470)
Q Consensus 81 l~~~l~~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~ 160 (470)
| + | ..+ ||||++..||+||..|++|+|||+|.+.++|+||++|+||.|.
T Consensus 296 ----l-------------~----------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGt 344 (387)
T KOG0329|consen 296 ----L-------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGT 344 (387)
T ss_pred ----h-------------h----------h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccc
Confidence 1 0 2 123 8999999999999999999999999999999999999999999
Q ss_pred CCeEEEeeChh-hHHHHHHHHHHhCCCcc
Q 012133 161 EGTAILMFTSS-QRRTVRSLERDVGCKFE 188 (470)
Q Consensus 161 ~g~~i~l~~~~-~~~~~~~i~~~~~~~~~ 188 (470)
.|.+|+|++.. +...+..+......++.
T Consensus 345 kglaitfvs~e~da~iLn~vqdRf~v~i~ 373 (387)
T KOG0329|consen 345 KGLAITFVSDENDAKILNPVQDRFEVNIK 373 (387)
T ss_pred ccceeehhcchhhHHHhchhhHhhhccHh
Confidence 99999999864 44555555555544443
No 63
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=4.6e-19 Score=179.91 Aligned_cols=241 Identities=17% Similarity=0.274 Sum_probs=188.0
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHH-HHHHHHHH--cCCCeEEEEeCchHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTI-LSDLITVY--AKGGKTIVFTQTKRD 77 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~-l~~ll~~~--~~~~~~lVF~~t~~~ 77 (470)
|+.||||..+ -.+.|+.+...+.+.+.. -.|..+|-..+.-+.+++ +..+++.+ .+.+.+|||....++
T Consensus 414 lIsSAT~DAe---kFS~fFDdapIF~iPGRR-----yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeE 485 (902)
T KOG0923|consen 414 LISSATMDAE---KFSAFFDDAPIFRIPGRR-----YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEE 485 (902)
T ss_pred EeeccccCHH---HHHHhccCCcEEeccCcc-----cceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHH
Confidence 5789999865 345577776666664332 345667777777666654 44444433 356899999999998
Q ss_pred HHHHHHHHhc----------CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEec-------
Q 012133 78 ADEVSLALTS----------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE------- 140 (470)
Q Consensus 78 ~~~l~~~l~~----------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~------- 140 (470)
++...+.|.. .+.+.+||+.||...+.++++.-..|..+|++||++|+..|.|++|.+||+-+
T Consensus 486 IEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsy 565 (902)
T KOG0923|consen 486 IETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSY 565 (902)
T ss_pred HHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCc
Confidence 8877777753 15689999999999999999999999999999999999999999999999433
Q ss_pred -----------CCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHHHHHH
Q 012133 141 -----------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 209 (470)
Q Consensus 141 -----------~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 209 (470)
.|.+..+-.||+||+||.| +|+|+.||+...+ ...++ ..+.++|....+..++..
T Consensus 566 nprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~aY--~~eLE-----------~~t~PEIqRtnL~nvVL~ 631 (902)
T KOG0923|consen 566 NPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWAY--EHELE-----------EMTVPEIQRTNLGNVVLL 631 (902)
T ss_pred CCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhhh--hhhhc-----------cCCCcceeeccchhHHHH
Confidence 3557788899999999996 9999999997442 22222 223356777788888999
Q ss_pred HcccCccchhhhHHHHHHHHHhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEE
Q 012133 210 LNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268 (470)
Q Consensus 210 l~~~~~~~~~~~~~~a~~l~~~~~~~~l~~al~~l~~~~~~~~~r~l~~~~~~~~~~~~ 268 (470)
|+++...++-.| ++++.++.+.|..+|..|..+.+......|+...+.|..+++
T Consensus 632 LkSLGI~Dl~~F-----dFmDpPp~etL~~aLE~LyaLGALn~~GeLTk~GrrMaEfP~ 685 (902)
T KOG0923|consen 632 LKSLGIHDLIHF-----DFLDPPPTETLLKALEQLYALGALNHLGELTKLGRRMAEFPV 685 (902)
T ss_pred HHhcCcchhccc-----ccCCCCChHHHHHHHHHHHHhhccccccchhhhhhhhhhcCC
Confidence 999888777777 888999999999999999988888877788877777776665
No 64
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.78 E-value=1.6e-18 Score=172.47 Aligned_cols=122 Identities=33% Similarity=0.555 Sum_probs=107.0
Q ss_pred ccHHHHHHHHHHHH---cCCCeEEEEeCchHHHHHHHHHHhc-CCcEE-EEe--------CCCCHHHHHHHHcccccCCe
Q 012133 49 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASE-ALH--------GDISQHQRERTLNGFRQGKF 115 (470)
Q Consensus 49 ~~k~~~l~~ll~~~---~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~-~lh--------g~~~~~~R~~~~~~f~~g~~ 115 (470)
..|++.+..+++.+ ..+.++|||++.+++++.|...|.+ +..+. .+- .+|+|++|.+++++|+.|.+
T Consensus 347 HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~ 426 (542)
T COG1111 347 HPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEY 426 (542)
T ss_pred CccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCc
Confidence 46778788887644 2457999999999999999999986 33332 332 36999999999999999999
Q ss_pred eEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChh
Q 012133 116 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS 171 (470)
Q Consensus 116 ~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~ 171 (470)
+|||||+++++|||||++++||.|++-.|+..++||.|||||. +.|.+++|++..
T Consensus 427 nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 427 NVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred eEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 9999999999999999999999999999999999999999998 899999999876
No 65
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.78 E-value=5.5e-18 Score=180.78 Aligned_cols=164 Identities=19% Similarity=0.207 Sum_probs=126.9
Q ss_pred EeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHH-HHcCCCeEEEEeCchHHHHHH
Q 012133 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT-VYAKGGKTIVFTQTKRDADEV 81 (470)
Q Consensus 3 fSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~-~~~~~~~~lVF~~t~~~~~~l 81 (470)
||.|.-.+..++.+-|--+. +.+... .+....... -.+.+....|..++...+. .+....++||||+|++.++.+
T Consensus 365 mTGTa~~~~~Ef~~iY~l~v--~~IPt~-kp~~r~d~~-d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~l 440 (762)
T TIGR03714 365 MTGTGKVAEKEFIETYSLSV--VKIPTN-KPIIRIDYP-DKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIY 440 (762)
T ss_pred cCCCChhHHHHHHHHhCCCE--EEcCCC-CCeeeeeCC-CeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHH
Confidence 67887666666666554332 333211 111111111 1233455678877777664 445678999999999999999
Q ss_pred HHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCC---------CccEEEEecCCCChhHHHHH
Q 012133 82 SLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---------NVDLIIHYELPNDPETFVHR 151 (470)
Q Consensus 82 ~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip---------~v~~VI~~~~p~~~~~y~qr 151 (470)
+..|.+ ++++..||+++.+.++..+.++++.+ .|+||||+++||+||+ .+.+|++|++|..... +||
T Consensus 441 s~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr 517 (762)
T TIGR03714 441 SELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQL 517 (762)
T ss_pred HHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHh
Confidence 999985 89999999999999999888888876 7999999999999999 9999999999988776 999
Q ss_pred hcccCCCCCCCeEEEeeChhhH
Q 012133 152 SGRTGRAGKEGTAILMFTSSQR 173 (470)
Q Consensus 152 ~GR~gR~g~~g~~i~l~~~~~~ 173 (470)
+|||||.|.+|.+++|++..+.
T Consensus 518 ~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 518 RGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred hhcccCCCCceeEEEEEccchh
Confidence 9999999999999999998663
No 66
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.78 E-value=1.9e-17 Score=178.43 Aligned_cols=138 Identities=28% Similarity=0.422 Sum_probs=119.7
Q ss_pred HHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCC
Q 012133 53 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 131 (470)
Q Consensus 53 ~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip 131 (470)
.++..+......+.++||||+|++.++.|++.|.. ++.+..+|+++++.+|..+++.|+.|++.|||||+++++|+|+|
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp 513 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIP 513 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCcccc
Confidence 34444444455678999999999999999999985 78999999999999999999999999999999999999999999
Q ss_pred CccEEEEecC-----CCChhHHHHHhcccCCCCCCCeEEEeeCh---------hhHHHHHHHHHHhCCCccccC
Q 012133 132 NVDLIIHYEL-----PNDPETFVHRSGRTGRAGKEGTAILMFTS---------SQRRTVRSLERDVGCKFEFVS 191 (470)
Q Consensus 132 ~v~~VI~~~~-----p~~~~~y~qr~GR~gR~g~~g~~i~l~~~---------~~~~~~~~i~~~~~~~~~~~~ 191 (470)
++++||++|. |.+..+|+||+|||||. ..|.+++|++. .+...++.++..++.+...++
T Consensus 514 ~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 586 (652)
T PRK05298 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITP 586 (652)
T ss_pred CCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 9999999885 78999999999999997 78999999984 466777778877777666543
No 67
>PRK00254 ski2-like helicase; Provisional
Probab=99.77 E-value=8.6e-18 Score=184.29 Aligned_cols=111 Identities=26% Similarity=0.442 Sum_probs=94.7
Q ss_pred HcCCCeEEEEeCchHHHHHHHHHHhc----------------------------------CCcEEEEeCCCCHHHHHHHH
Q 012133 62 YAKGGKTIVFTQTKRDADEVSLALTS----------------------------------IIASEALHGDISQHQRERTL 107 (470)
Q Consensus 62 ~~~~~~~lVF~~t~~~~~~l~~~l~~----------------------------------~~~~~~lhg~~~~~~R~~~~ 107 (470)
...+.++||||+|++.|+.++..|.. ...+.++|++|++++|..++
T Consensus 235 i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve 314 (720)
T PRK00254 235 VKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIE 314 (720)
T ss_pred HHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHH
Confidence 34568999999999999887766531 12488999999999999999
Q ss_pred cccccCCeeEEEecccccccCCCCCccEEEE-------ecCCC-ChhHHHHHhcccCCCC--CCCeEEEeeChhh
Q 012133 108 NGFRQGKFTVLVATDVAARGLDIPNVDLIIH-------YELPN-DPETFVHRSGRTGRAG--KEGTAILMFTSSQ 172 (470)
Q Consensus 108 ~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~-------~~~p~-~~~~y~qr~GR~gR~g--~~g~~i~l~~~~~ 172 (470)
+.|++|.++|||||+++++|||+|.+++||. ++.|. +..+|+||+||+||.+ ..|.+++++...+
T Consensus 315 ~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 315 DAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 9999999999999999999999999999994 45544 5679999999999975 6799999987654
No 68
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.77 E-value=4.7e-18 Score=145.82 Aligned_cols=128 Identities=47% Similarity=0.776 Sum_probs=113.2
Q ss_pred eEEEEEEcCcccHHHHHHHHHHHHc-CCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCee
Q 012133 39 IKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFT 116 (470)
Q Consensus 39 i~~~~~~~~~~~k~~~l~~ll~~~~-~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~ 116 (470)
+.+++...+ +.|...+..++.... ...++||||+++..++.+++.|.+ ...+..+|+.++..+|..+++.|+++..+
T Consensus 2 i~~~~~~~~-~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 80 (131)
T cd00079 2 IKQYVLPVE-DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIV 80 (131)
T ss_pred cEEEEEECC-HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 344555543 367777888876553 567999999999999999999985 68899999999999999999999999999
Q ss_pred EEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEe
Q 012133 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 167 (470)
Q Consensus 117 iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l 167 (470)
|||+|+++++|+|+|.+++||.+++|++...|+|++||++|.|+.+.++++
T Consensus 81 ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 81 VLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred EEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999999999999988887764
No 69
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.77 E-value=4.2e-18 Score=180.64 Aligned_cols=165 Identities=21% Similarity=0.240 Sum_probs=129.3
Q ss_pred EeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHH-HHHHHcCCCeEEEEeCchHHHHHH
Q 012133 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD-LITVYAKGGKTIVFTQTKRDADEV 81 (470)
Q Consensus 3 fSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~-ll~~~~~~~~~lVF~~t~~~~~~l 81 (470)
||.|...+...+.+-|--+.+.|.. . .+....... -.+.....+|..++.. +...+..+.++||||+|++.++.|
T Consensus 346 mTGTa~te~~E~~~iY~l~vv~IPt--n-kp~~R~d~~-d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~l 421 (745)
T TIGR00963 346 MTGTAKTEEEEFEKIYNLEVVVVPT--N-RPVIRKDLS-DLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELL 421 (745)
T ss_pred cCCCcHHHHHHHHHHhCCCEEEeCC--C-CCeeeeeCC-CeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHH
Confidence 6888877777777766544333321 1 111111111 1122333456655544 445566788999999999999999
Q ss_pred HHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCC-------ccEEEEecCCCChhHHHHHhc
Q 012133 82 SLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN-------VDLIIHYELPNDPETFVHRSG 153 (470)
Q Consensus 82 ~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~-------v~~VI~~~~p~~~~~y~qr~G 153 (470)
+..|.+ ++++..||+. +.+|+..+..|+.+...|+||||+|+||+||+. .-+||+++.|.+...|.|+.|
T Consensus 422 s~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~G 499 (745)
T TIGR00963 422 SNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRG 499 (745)
T ss_pred HHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhc
Confidence 999985 8999999999 889999999999999999999999999999998 459999999999999999999
Q ss_pred ccCCCCCCCeEEEeeChhhH
Q 012133 154 RTGRAGKEGTAILMFTSSQR 173 (470)
Q Consensus 154 R~gR~g~~g~~i~l~~~~~~ 173 (470)
||||.|.+|.+.+|++..+.
T Consensus 500 RtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 500 RSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred cccCCCCCcceEEEEeccHH
Confidence 99999999999999998764
No 70
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.77 E-value=6.1e-18 Score=170.42 Aligned_cols=145 Identities=20% Similarity=0.284 Sum_probs=104.8
Q ss_pred CEEeecCCHHHHHHHHHH--cCCCcEEEeecccc-----------------cccccceEEEEEEcCcccHHHHHHHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKY--LDNPLNIDLVGNQD-----------------EKLAEGIKLYAISTTATSKRTILSDLITV 61 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~--l~~p~~i~~~~~~~-----------------~~~~~~i~~~~~~~~~~~k~~~l~~ll~~ 61 (470)
|++|||+|+++.+..+.. +..|..+ +.+... ..+.+.+.+.+.. ....+.+.+..+++.
T Consensus 185 i~lSAT~~~~~~~~l~~~~~~~~~~~~-v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~ 262 (357)
T TIGR03158 185 VFLSATPDPALILRLQNAKQAGVKIAP-IDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEE 262 (357)
T ss_pred EEEecCCCHHHHHHHHhccccCceeee-ecCcccccCCChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHH
Confidence 579999999988877654 4444322 222200 0112356665555 334455544444332
Q ss_pred ----H--cCCCeEEEEeCchHHHHHHHHHHhc---CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCC
Q 012133 62 ----Y--AKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 132 (470)
Q Consensus 62 ----~--~~~~~~lVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~ 132 (470)
+ ....++||||+|++.++.+++.|.+ .+.+..+||.+++.+|+++. +..||||||++++|||+|.
T Consensus 263 i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~ 336 (357)
T TIGR03158 263 VIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKR 336 (357)
T ss_pred HHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCC
Confidence 2 2457999999999999999999985 35788999999999998664 6789999999999999998
Q ss_pred ccEEEEecCCCChhHHHHHhcccC
Q 012133 133 VDLIIHYELPNDPETFVHRSGRTG 156 (470)
Q Consensus 133 v~~VI~~~~p~~~~~y~qr~GR~g 156 (470)
+ +|| ++ |.+.++|+||+||+|
T Consensus 337 ~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 337 D-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred c-eEE-EC-CCCHHHHhhhcccCC
Confidence 7 566 45 889999999999986
No 71
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.76 E-value=1.6e-17 Score=177.96 Aligned_cols=129 Identities=25% Similarity=0.429 Sum_probs=114.0
Q ss_pred HHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCC
Q 012133 53 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 131 (470)
Q Consensus 53 ~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip 131 (470)
.++..+......+.++||||+|++.++.|++.|.+ ++.+..+|+++++.+|.++++.|+.|++.|||||+++++|+|+|
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP 509 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLP 509 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeC
Confidence 34444444556678999999999999999999985 78999999999999999999999999999999999999999999
Q ss_pred CccEEEEec-----CCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHH
Q 012133 132 NVDLIIHYE-----LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 182 (470)
Q Consensus 132 ~v~~VI~~~-----~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~ 182 (470)
++++||++| .|.+..+|+||+|||||. ..|.++++++..+..+.+.|++.
T Consensus 510 ~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 510 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred CCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 999999998 799999999999999998 78999999998766666555443
No 72
>PRK01172 ski2-like helicase; Provisional
Probab=99.75 E-value=2.3e-17 Score=180.05 Aligned_cols=109 Identities=25% Similarity=0.369 Sum_probs=92.1
Q ss_pred HcCCCeEEEEeCchHHHHHHHHHHhcC--------------------------CcEEEEeCCCCHHHHHHHHcccccCCe
Q 012133 62 YAKGGKTIVFTQTKRDADEVSLALTSI--------------------------IASEALHGDISQHQRERTLNGFRQGKF 115 (470)
Q Consensus 62 ~~~~~~~lVF~~t~~~~~~l~~~l~~~--------------------------~~~~~lhg~~~~~~R~~~~~~f~~g~~ 115 (470)
....+++||||+|++.++.++..|... ..+..+|++|++++|..+++.|++|.+
T Consensus 233 ~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i 312 (674)
T PRK01172 233 VNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYI 312 (674)
T ss_pred HhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCC
Confidence 446789999999999999999888532 147789999999999999999999999
Q ss_pred eEEEecccccccCCCCCccEEEEec---------CCCChhHHHHHhcccCCCC--CCCeEEEeeChh
Q 012133 116 TVLVATDVAARGLDIPNVDLIIHYE---------LPNDPETFVHRSGRTGRAG--KEGTAILMFTSS 171 (470)
Q Consensus 116 ~iLVaTdv~~~Gidip~v~~VI~~~---------~p~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~ 171 (470)
+|||||+++++|||+|...+|| ++ .|.++.+|.||+||+||.| ..|.+++++...
T Consensus 313 ~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 313 KVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred eEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 9999999999999999875555 33 3568889999999999998 467788876543
No 73
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.74 E-value=2.3e-17 Score=180.22 Aligned_cols=178 Identities=22% Similarity=0.331 Sum_probs=143.7
Q ss_pred CEEeecCCHHHHHHHHHHc--CCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHH
Q 012133 1 MLFSATMPSWVKKLSRKYL--DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDA 78 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l--~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~ 78 (470)
|.+|||....|++-+-..| .+|..+.-. ...+++.+........+....+...+..+.+...+||||.++.+|
T Consensus 424 iALTATAT~~v~~DIi~~L~l~~~~~~~~s-----fnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~c 498 (941)
T KOG0351|consen 424 IALTATATERVREDVIRSLGLRNPELFKSS-----FNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKEC 498 (941)
T ss_pred EEeehhccHHHHHHHHHHhCCCCcceeccc-----CCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchH
Confidence 4579999888777444444 466644321 223445433333322344444445555666788999999999999
Q ss_pred HHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCC
Q 012133 79 DEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 157 (470)
Q Consensus 79 ~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR 157 (470)
+.++..|.+ ++.+..+|++|+..+|+.+.+.|..++++|+|||=+...|||-|||..||||.+|++.+.|.|-+||+||
T Consensus 499 e~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGR 578 (941)
T KOG0351|consen 499 EQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGR 578 (941)
T ss_pred HHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCc
Confidence 999999996 6799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEeeChhhHHHHHHHHHHh
Q 012133 158 AGKEGTAILMFTSSQRRTVRSLERDV 183 (470)
Q Consensus 158 ~g~~g~~i~l~~~~~~~~~~~i~~~~ 183 (470)
.|....|++||...+...++.+...-
T Consensus 579 DG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 579 DGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred CCCcceeEEecchhHHHHHHHHHHcc
Confidence 99999999999999887777665443
No 74
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=5.2e-17 Score=173.76 Aligned_cols=164 Identities=23% Similarity=0.266 Sum_probs=127.5
Q ss_pred EeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHH-HHcCCCeEEEEeCchHHHHHH
Q 012133 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT-VYAKGGKTIVFTQTKRDADEV 81 (470)
Q Consensus 3 fSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~-~~~~~~~~lVF~~t~~~~~~l 81 (470)
||.|...+...+.+-|--+. |.+... .+....... -.+......|..+|...+. .+....++||||+|++.++.|
T Consensus 381 mTGTa~~e~~Ef~~iY~l~v--v~IPtn-kp~~r~d~~-d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~l 456 (796)
T PRK12906 381 MTGTAKTEEEEFREIYNMEV--ITIPTN-RPVIRKDSP-DLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERL 456 (796)
T ss_pred cCCCCHHHHHHHHHHhCCCE--EEcCCC-CCeeeeeCC-CeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHH
Confidence 68888776666666564442 323211 111111111 1223344567777776664 456778999999999999999
Q ss_pred HHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCC---CCcc-----EEEEecCCCChhHHHHHh
Q 012133 82 SLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI---PNVD-----LIIHYELPNDPETFVHRS 152 (470)
Q Consensus 82 ~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidi---p~v~-----~VI~~~~p~~~~~y~qr~ 152 (470)
+..|.+ ++++..||+++.+.++..+.+.++.|. |+|||++|+||+|| ++|. |||+++.|.+...|.|+.
T Consensus 457 s~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~ 534 (796)
T PRK12906 457 SHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLR 534 (796)
T ss_pred HHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHh
Confidence 999985 799999999999888888888888765 99999999999999 4899 999999999999999999
Q ss_pred cccCCCCCCCeEEEeeChhh
Q 012133 153 GRTGRAGKEGTAILMFTSSQ 172 (470)
Q Consensus 153 GR~gR~g~~g~~i~l~~~~~ 172 (470)
|||||.|.+|.+.+|++.++
T Consensus 535 GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 535 GRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred hhhccCCCCcceEEEEeccc
Confidence 99999999999999998765
No 75
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.73 E-value=2.1e-16 Score=165.08 Aligned_cols=106 Identities=17% Similarity=0.315 Sum_probs=90.9
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc--------CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccE
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS--------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 135 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~--------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~ 135 (470)
-.+.++||.+-+..+..|...|.. .+.+.++|+.++..++.++.+....+..++|++|++++..|.|.++.+
T Consensus 642 i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~ 721 (1282)
T KOG0921|consen 642 IDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVY 721 (1282)
T ss_pred CccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeE
Confidence 357899999999999999887753 267999999999999999999999999999999999999999999988
Q ss_pred EEEecCC------------------CChhHHHHHhcccCCCCCCCeEEEeeCh
Q 012133 136 IIHYELP------------------NDPETFVHRSGRTGRAGKEGTAILMFTS 170 (470)
Q Consensus 136 VI~~~~p------------------~~~~~y~qr~GR~gR~g~~g~~i~l~~~ 170 (470)
||+.+.- .+..+.+||.||++|. ++|.|+.++..
T Consensus 722 vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 722 VIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred EEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHH
Confidence 8844321 2566779999999998 79999988765
No 76
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=2e-17 Score=168.45 Aligned_cols=241 Identities=19% Similarity=0.298 Sum_probs=181.3
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHH-HHHHHHHH--cCCCeEEEEeCchHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTI-LSDLITVY--AKGGKTIVFTQTKRD 77 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~-l~~ll~~~--~~~~~~lVF~~t~~~ 77 (470)
|++||||.. +++.. |+.+...+.+.+.. -.++..|...+.++..++ +.+.+..+ ...+.+|||.+..++
T Consensus 504 iVtSATm~a--~kf~n-fFgn~p~f~IpGRT-----yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqed 575 (1042)
T KOG0924|consen 504 IVTSATMDA--QKFSN-FFGNCPQFTIPGRT-----YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQED 575 (1042)
T ss_pred EEeeccccH--HHHHH-HhCCCceeeecCCc-----cceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcc
Confidence 578999974 45555 45555556664432 345667777776666544 44444433 345899999998887
Q ss_pred HHHHHHHHhc-----------CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEec------
Q 012133 78 ADEVSLALTS-----------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE------ 140 (470)
Q Consensus 78 ~~~l~~~l~~-----------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~------ 140 (470)
++-.+..+.. .+.+.+|++.||+..+.++++.-..+..+++|||++|+..|.||.+.+||+.+
T Consensus 576 iE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kv 655 (1042)
T KOG0924|consen 576 IECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKV 655 (1042)
T ss_pred hhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeee
Confidence 6665554431 26799999999999999999999999999999999999999999999999644
Q ss_pred ------------CCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHHHHH
Q 012133 141 ------------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVA 208 (470)
Q Consensus 141 ------------~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 208 (470)
.|.+..+-.||+||+||.+ +|.||.+|+...+ ...+.+.+.+||....+..++.
T Consensus 656 yn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ay-------------~~eml~stvPEIqRTNl~nvVL 721 (1042)
T KOG0924|consen 656 YNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTEDAY-------------KNEMLPSTVPEIQRTNLSNVVL 721 (1042)
T ss_pred cccccccceeEEEechhccchhhccccCCCC-CcceeeehhhhHH-------------HhhcccCCCchhhhcchhhHHH
Confidence 4667788899999999994 9999999988542 1223345567888888889999
Q ss_pred HHcccCccchhhhHHHHHHHHHhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEE
Q 012133 209 TLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268 (470)
Q Consensus 209 ~l~~~~~~~~~~~~~~a~~l~~~~~~~~l~~al~~l~~~~~~~~~r~l~~~~~~~~~~~~ 268 (470)
.|+++..+++..| ++++.++.+.+..++-.|.-+.+.....-|+.....|+.+++
T Consensus 722 lLkslgV~dll~F-----dFmD~Pped~~~~sly~Lw~LGAl~~~g~LT~lG~~MvefpL 776 (1042)
T KOG0924|consen 722 LLKSLGVDDLLKF-----DFMDPPPEDNLLNSLYQLWTLGALDNTGQLTPLGRKMVEFPL 776 (1042)
T ss_pred HHHhcChhhhhCC-----CcCCCCHHHHHHHHHHHHHHhhccccCCccchhhHHhhhCCC
Confidence 9999887777777 778888888899999988877766555556666666766655
No 77
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.72 E-value=1.5e-16 Score=167.42 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHH-cCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEec-cccccc
Q 012133 51 KRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT-DVAARG 127 (470)
Q Consensus 51 k~~~l~~ll~~~-~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaT-dv~~~G 127 (470)
+..+|..++..+ ..+.++||||+++++++.|++.|.+ ++.+..+||+|++++|.++++.|++++..||||| +++++|
T Consensus 329 Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG 408 (501)
T PHA02558 329 RNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTG 408 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccc
Confidence 444555554433 3457899999999999999999985 7899999999999999999999999999999998 999999
Q ss_pred CCCCCccEEEEecCCCChhHHHHHhcccCCCCCCC
Q 012133 128 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG 162 (470)
Q Consensus 128 idip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g 162 (470)
+|+|++++||++.++.+...|+||+||++|.+...
T Consensus 409 ~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 409 ISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 99999999999999999999999999999986544
No 78
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.71 E-value=5e-16 Score=166.66 Aligned_cols=140 Identities=24% Similarity=0.427 Sum_probs=112.5
Q ss_pred HHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhcC--CcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCC
Q 012133 54 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI--IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 131 (470)
Q Consensus 54 ~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~--~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip 131 (470)
++..+.+...+...+|||+||+..++.++..|.+. ..+..+||.++.++|..+.++|++|+.+++|||..++-|||+-
T Consensus 242 ~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG 321 (814)
T COG1201 242 LYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIG 321 (814)
T ss_pred HHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccC
Confidence 33444444445579999999999999999999863 6899999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCCChhHHHHHhcccCC-CCCCCeEEEeeChhh--HHHHHHHHHHhCCCccccCCC
Q 012133 132 NVDLIIHYELPNDPETFVHRSGRTGR-AGKEGTAILMFTSSQ--RRTVRSLERDVGCKFEFVSPP 193 (470)
Q Consensus 132 ~v~~VI~~~~p~~~~~y~qr~GR~gR-~g~~g~~i~l~~~~~--~~~~~~i~~~~~~~~~~~~~p 193 (470)
+|++||||..|.++..++||+||+|+ .+.....+++....+ ..........+.-+++.+.+|
T Consensus 322 ~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~ 386 (814)
T COG1201 322 DIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIP 386 (814)
T ss_pred CceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCC
Confidence 99999999999999999999999986 456677777766632 122233344445555555444
No 79
>PRK09401 reverse gyrase; Reviewed
Probab=99.71 E-value=6.5e-17 Score=182.69 Aligned_cols=143 Identities=22% Similarity=0.267 Sum_probs=116.1
Q ss_pred CEEeecCCHH-HHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHH--
Q 012133 1 MLFSATMPSW-VKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRD-- 77 (470)
Q Consensus 1 llfSATlp~~-i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~-- 77 (470)
|+||||+++. +.. .++.++..+.+.. ......+|.+.|+.++ ++.+.|..+++.+. ..+||||+|++.
T Consensus 272 ilfSAT~~~~~~~~---~l~~~ll~~~v~~--~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l~--~~~LIFv~t~~~~~ 342 (1176)
T PRK09401 272 VVSSATGRPRGNRV---KLFRELLGFEVGS--PVFYLRNIVDSYIVDE--DSVEKLVELVKRLG--DGGLIFVPSDKGKE 342 (1176)
T ss_pred EEEeCCCCccchHH---HHhhccceEEecC--cccccCCceEEEEEcc--cHHHHHHHHHHhcC--CCEEEEEecccChH
Confidence 5899999875 332 2345565566532 2335677888888765 67777888887653 589999999777
Q ss_pred -HHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEe----cccccccCCCCC-ccEEEEecCCC------C
Q 012133 78 -ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVA----TDVAARGLDIPN-VDLIIHYELPN------D 144 (470)
Q Consensus 78 -~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVa----Tdv~~~Gidip~-v~~VI~~~~p~------~ 144 (470)
+++|++.|.. ++.+..+||+| ++.+++|++|+++|||| ||+++||||+|+ |.+||||++|. .
T Consensus 343 ~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~ 417 (1176)
T PRK09401 343 YAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEE 417 (1176)
T ss_pred HHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccc
Confidence 9999999985 79999999999 23469999999999999 699999999999 89999999998 7
Q ss_pred hhHHHHHhcccCC
Q 012133 145 PETFVHRSGRTGR 157 (470)
Q Consensus 145 ~~~y~qr~GR~gR 157 (470)
.+.|.||++|+-.
T Consensus 418 ~~~~~~~~~r~~~ 430 (1176)
T PRK09401 418 ELAPPFLLLRLLS 430 (1176)
T ss_pred cccCHHHHHHHHh
Confidence 7899999999864
No 80
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=1.9e-16 Score=170.54 Aligned_cols=165 Identities=22% Similarity=0.257 Sum_probs=128.0
Q ss_pred EeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHH-HcCCCeEEEEeCchHHHHHH
Q 012133 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEV 81 (470)
Q Consensus 3 fSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~-~~~~~~~lVF~~t~~~~~~l 81 (470)
||.|...+..++.+-|--+.+.|.. . .+....+.. -.+......|..+|...+.. +....++||||+|++.++.|
T Consensus 539 MTGTA~te~~Ef~~iY~L~Vv~IPT--n-rP~~R~D~~-d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~L 614 (1025)
T PRK12900 539 MTGTAETEASEFFEIYKLDVVVIPT--N-KPIVRKDMD-DLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETL 614 (1025)
T ss_pred cCCCChhHHHHHHHHhCCcEEECCC--C-CCcceecCC-CeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHH
Confidence 6778776666666666444333321 1 111111111 12234455788777777753 45678999999999999999
Q ss_pred HHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCC---Ccc-----EEEEecCCCChhHHHHHh
Q 012133 82 SLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NVD-----LIIHYELPNDPETFVHRS 152 (470)
Q Consensus 82 ~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip---~v~-----~VI~~~~p~~~~~y~qr~ 152 (470)
+..|.. ++++..||+ .+.+|+..+..|+.+...|+||||+|+||+||+ .|. +||+++.|.+...|.||.
T Consensus 615 s~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~ 692 (1025)
T PRK12900 615 SRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLR 692 (1025)
T ss_pred HHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHh
Confidence 999984 899999997 589999999999999999999999999999999 554 458999999999999999
Q ss_pred cccCCCCCCCeEEEeeChhhH
Q 012133 153 GRTGRAGKEGTAILMFTSSQR 173 (470)
Q Consensus 153 GR~gR~g~~g~~i~l~~~~~~ 173 (470)
|||||.|.+|.+++|++..+.
T Consensus 693 GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 693 GRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred hhhhcCCCCcceEEEechhHH
Confidence 999999999999999998764
No 81
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.69 E-value=3.2e-16 Score=177.28 Aligned_cols=129 Identities=21% Similarity=0.355 Sum_probs=102.5
Q ss_pred EEeec-CCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCch---HH
Q 012133 2 LFSAT-MPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTK---RD 77 (470)
Q Consensus 2 lfSAT-lp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~---~~ 77 (470)
+|||| +|..++. .+++++..+++.. ......++.+.|+.+.. +...|..+++.+ ...+||||+|+ +.
T Consensus 271 ~~SAT~~p~~~~~---~l~r~ll~~~v~~--~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~ 341 (1171)
T TIGR01054 271 VSSATGRPRGKRA---KLFRELLGFEVGG--GSDTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEK 341 (1171)
T ss_pred EEeCCCCccccHH---HHcccccceEecC--ccccccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHH
Confidence 58999 6766542 3556666676632 23456778888876543 345566777665 36899999999 99
Q ss_pred HHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEe----cccccccCCCCC-ccEEEEecCCC
Q 012133 78 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVA----TDVAARGLDIPN-VDLIIHYELPN 143 (470)
Q Consensus 78 ~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVa----Tdv~~~Gidip~-v~~VI~~~~p~ 143 (470)
|++|++.|.+ ++.+..+||+|++ .++++|++|+++|||| ||+++||||+|+ |++||||++|.
T Consensus 342 a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 342 AEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 9999999985 7999999999973 6899999999999999 599999999999 89999998773
No 82
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.69 E-value=4.7e-17 Score=127.09 Aligned_cols=76 Identities=39% Similarity=0.768 Sum_probs=72.3
Q ss_pred HHh-cCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCC
Q 012133 84 ALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 159 (470)
Q Consensus 84 ~l~-~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g 159 (470)
.|+ .++.+..+|+++++.+|+.+++.|+++...|||||+++++|||+|++++||++++|+++..|+|++||++|.|
T Consensus 2 ~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 344 3789999999999999999999999999999999999999999999999999999999999999999999975
No 83
>PRK09694 helicase Cas3; Provisional
Probab=99.69 E-value=6.5e-15 Score=161.39 Aligned_cols=107 Identities=25% Similarity=0.449 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhcC----CcEEEEeCCCCHHHH----HHHHccc-ccCC---eeEE
Q 012133 51 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI----IASEALHGDISQHQR----ERTLNGF-RQGK---FTVL 118 (470)
Q Consensus 51 k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~----~~~~~lhg~~~~~~R----~~~~~~f-~~g~---~~iL 118 (470)
...++..+++.....+++||||||++.|+++++.|++. ..+..+|+.+++.+| +++++.| ++++ .+||
T Consensus 546 ~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~IL 625 (878)
T PRK09694 546 DLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRIL 625 (878)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEE
Confidence 34566667766667789999999999999999999853 479999999999999 4577788 6665 4799
Q ss_pred EecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCC
Q 012133 119 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 160 (470)
Q Consensus 119 VaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~ 160 (470)
|||+++++|||| +++++|....| .+.|+||+||++|.++
T Consensus 626 VaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 626 VATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999999999999 58999998777 6799999999999874
No 84
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.68 E-value=6.2e-16 Score=165.11 Aligned_cols=119 Identities=24% Similarity=0.334 Sum_probs=102.0
Q ss_pred cHHHHHHHHHHHHc-CCCeEEEEeCchHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHcccccC-CeeEEEeccccccc
Q 012133 50 SKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQG-KFTVLVATDVAARG 127 (470)
Q Consensus 50 ~k~~~l~~ll~~~~-~~~~~lVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~f~~g-~~~iLVaTdv~~~G 127 (470)
.|+.++..+++.+. .+.++||||.+...++.+++.|. +..|||.+++.+|+++++.|+++ .+++||+|+++.+|
T Consensus 480 ~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeG 555 (732)
T TIGR00603 480 NKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTS 555 (732)
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC----CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccc
Confidence 45666677776653 56799999999999999988873 56799999999999999999975 78999999999999
Q ss_pred CCCCCccEEEEecCCC-ChhHHHHHhcccCCCCCCCeE-------EEeeChhh
Q 012133 128 LDIPNVDLIIHYELPN-DPETFVHRSGRTGRAGKEGTA-------ILMFTSSQ 172 (470)
Q Consensus 128 idip~v~~VI~~~~p~-~~~~y~qr~GR~gR~g~~g~~-------i~l~~~~~ 172 (470)
||+|++++||+++.|. +...|+||+||++|.+..+.+ |.|++..+
T Consensus 556 IDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 556 IDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred cCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 9999999999999985 999999999999998766554 67777643
No 85
>PRK14701 reverse gyrase; Provisional
Probab=99.68 E-value=1.5e-16 Score=183.42 Aligned_cols=167 Identities=17% Similarity=0.233 Sum_probs=130.2
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHH---
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRD--- 77 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~--- 77 (470)
|+||||+++.- ++ .++++++..+.+. .......++.+.|+.+....+ ..|..+++.. ...+||||+|++.
T Consensus 273 l~~SAT~~~r~-~~-~~l~~~~l~f~v~--~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ 345 (1638)
T PRK14701 273 IVASATGKAKG-DR-VKLYRELLGFEVG--SGRSALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEK 345 (1638)
T ss_pred EEEecCCCchh-HH-HHHhhcCeEEEec--CCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchH
Confidence 46899999641 12 2345677777663 233456778888887655545 4566777665 3689999999875
Q ss_pred HHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEec----ccccccCCCCC-ccEEEEecCCC---ChhHH
Q 012133 78 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT----DVAARGLDIPN-VDLIIHYELPN---DPETF 148 (470)
Q Consensus 78 ~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaT----dv~~~Gidip~-v~~VI~~~~p~---~~~~y 148 (470)
|++|++.|.. ++.+..+|++ |..++++|++|+++||||| ++++||||+|+ |.+||||++|. +.+.|
T Consensus 346 ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~ 420 (1638)
T PRK14701 346 AEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLE 420 (1638)
T ss_pred HHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhc
Confidence 5899999985 8999999995 8899999999999999999 59999999999 99999999999 88877
Q ss_pred HHHh-------------cccCCCCCCCeEEEeeChhhHHHHHHH
Q 012133 149 VHRS-------------GRTGRAGKEGTAILMFTSSQRRTVRSL 179 (470)
Q Consensus 149 ~qr~-------------GR~gR~g~~g~~i~l~~~~~~~~~~~i 179 (470)
.|.. +|++|.|.+..++..+...+...++.+
T Consensus 421 ~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 464 (1638)
T PRK14701 421 DPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSI 464 (1638)
T ss_pred ccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHH
Confidence 6655 999999988888766666665555544
No 86
>PRK13766 Hef nuclease; Provisional
Probab=99.68 E-value=9e-16 Score=170.34 Aligned_cols=122 Identities=35% Similarity=0.558 Sum_probs=109.4
Q ss_pred ccHHHHHHHHHHHH---cCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCC--------CCHHHHHHHHcccccCCee
Q 012133 49 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGD--------ISQHQRERTLNGFRQGKFT 116 (470)
Q Consensus 49 ~~k~~~l~~ll~~~---~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~--------~~~~~R~~~~~~f~~g~~~ 116 (470)
..|.+.|.++|+.. ..+.++||||+++..++.|++.|.. ++.+..+||. |++.+|.+++++|++++++
T Consensus 346 ~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~ 425 (773)
T PRK13766 346 HPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFN 425 (773)
T ss_pred ChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCC
Confidence 45778888888654 3568999999999999999999964 7888899986 9999999999999999999
Q ss_pred EEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChh
Q 012133 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS 171 (470)
Q Consensus 117 iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~ 171 (470)
|||||+++++|+|+|++++||+||+|++...|+||+||+||.+ ++.+++|+...
T Consensus 426 vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~ 479 (773)
T PRK13766 426 VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKG 479 (773)
T ss_pred EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCC
Confidence 9999999999999999999999999999999999999999985 58888887753
No 87
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.67 E-value=3.7e-16 Score=168.27 Aligned_cols=238 Identities=19% Similarity=0.266 Sum_probs=170.8
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccc--------------cceEEEEEE------------cCcccHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA--------------EGIKLYAIS------------TTATSKRTI 54 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~--------------~~i~~~~~~------------~~~~~k~~~ 54 (470)
||||||+..+ +.+.|+.....|.+.+...+... ....++... ...+-..++
T Consensus 323 ILMSAT~dae---~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~L 399 (924)
T KOG0920|consen 323 ILMSATLDAE---LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDL 399 (924)
T ss_pred EEeeeecchH---HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHH
Confidence 6999999843 56777777766766443211100 000111000 011123455
Q ss_pred HHHHHHHH---cCCCeEEEEeCchHHHHHHHHHHhc--------CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc
Q 012133 55 LSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS--------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 123 (470)
Q Consensus 55 l~~ll~~~---~~~~~~lVF~~t~~~~~~l~~~l~~--------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv 123 (470)
+.+++..+ ...+.+|||.+...++..+++.|.. .+.+.++|+.|+..+++.+++....|..+||+||++
T Consensus 400 i~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNI 479 (924)
T KOG0920|consen 400 IEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNI 479 (924)
T ss_pred HHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhh
Confidence 66666544 3467999999999999999999963 156889999999999999999999999999999999
Q ss_pred ccccCCCCCccEEEE--------ecCCC----------ChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCC
Q 012133 124 AARGLDIPNVDLIIH--------YELPN----------DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 185 (470)
Q Consensus 124 ~~~Gidip~v~~VI~--------~~~p~----------~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~ 185 (470)
|+.+|.|+||.+||+ ||+-. +...-.||.||+||. ++|.||.+|+...+..+
T Consensus 480 AETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~~--------- 549 (924)
T KOG0920|consen 480 AETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEKL--------- 549 (924)
T ss_pred HhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhhhc---------
Confidence 999999999999994 45433 445558999999999 89999999998553211
Q ss_pred CccccCCCCHHHHHHHHHHHHHHHHcccCccchhhhHHHHHHHHHhhCHHHHHHHHHHHcCCCCCCCCccccc
Q 012133 186 KFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLIN 258 (470)
Q Consensus 186 ~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~l~~~~~~~~l~~al~~l~~~~~~~~~r~l~~ 258 (470)
...-+.+|++...+++++..++-+....+. +...++++.++++++..|+..|..+.+....-.|+.
T Consensus 550 ----~~~~q~PEilR~pL~~l~L~iK~l~~~~~~---~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT~ 615 (924)
T KOG0920|consen 550 ----MLAYQLPEILRTPLEELCLHIKVLEQGSIK---AFLSKALDPPPADAVDLAIERLKQIGALDESEELTP 615 (924)
T ss_pred ----ccccCChHHHhChHHHhhheeeeccCCCHH---HHHHHhcCCCChHHHHHHHHHHHHhccccCcccchH
Confidence 111345688888888888888866666665 445688899999999999988876655544445543
No 88
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.67 E-value=1.7e-15 Score=159.05 Aligned_cols=123 Identities=33% Similarity=0.555 Sum_probs=106.0
Q ss_pred ccHHHHHHHHHHHH---cCCCeEEEEeCchHHHHHHHHHHhc----CCcEEEEeC--------CCCHHHHHHHHcccccC
Q 012133 49 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS----IIASEALHG--------DISQHQRERTLNGFRQG 113 (470)
Q Consensus 49 ~~k~~~l~~ll~~~---~~~~~~lVF~~t~~~~~~l~~~l~~----~~~~~~lhg--------~~~~~~R~~~~~~f~~g 113 (470)
..|++.|.++|..+ .+..++||||.+++.|..|...|.. .+....+-| +|+|.++++++++|++|
T Consensus 394 npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G 473 (746)
T KOG0354|consen 394 NPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG 473 (746)
T ss_pred ChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCC
Confidence 56788888777543 3457999999999999999999873 234444433 69999999999999999
Q ss_pred CeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhH
Q 012133 114 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 173 (470)
Q Consensus 114 ~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~ 173 (470)
+++|||||.|+++||||+.|++||-||.-.++...+||.|| ||+ +.|.|+++++..+.
T Consensus 474 ~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 474 EINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEV 531 (746)
T ss_pred CccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhH
Confidence 99999999999999999999999999999999999999999 998 78999999885443
No 89
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.65 E-value=1.1e-15 Score=153.46 Aligned_cols=163 Identities=23% Similarity=0.358 Sum_probs=129.1
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEc-CcccHHHHHHHHHHHH-------cCCCeEEEEe
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAIST-TATSKRTILSDLITVY-------AKGGKTIVFT 72 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~-~~~~k~~~l~~ll~~~-------~~~~~~lVF~ 72 (470)
|-+|||+-+. +.+++++-.+.+..+ .. +..++.+.+.+ ...+|.+++..|.+.. .-.+++|||+
T Consensus 376 i~LSATVgNp-~elA~~l~a~lV~y~------~R-PVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT 447 (830)
T COG1202 376 IYLSATVGNP-EELAKKLGAKLVLYD------ER-PVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFT 447 (830)
T ss_pred EEEEeecCCh-HHHHHHhCCeeEeec------CC-CCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEe
Confidence 4589998654 457776644433322 11 23344444444 4678999999988642 1247999999
Q ss_pred CchHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEE---EecCCC-ChhH
Q 012133 73 QTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII---HYELPN-DPET 147 (470)
Q Consensus 73 ~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI---~~~~p~-~~~~ 147 (470)
+++..|.+|+..|. +++.+.++|++|+..+|+.+...|.++.+.++|+|-+++.|+|+|.-.+|+ -++.-| ++..
T Consensus 448 ~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~E 527 (830)
T COG1202 448 YSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVRE 527 (830)
T ss_pred cchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHH
Confidence 99999999999998 589999999999999999999999999999999999999999999866655 245555 8999
Q ss_pred HHHHhcccCCCC--CCCeEEEeeChh
Q 012133 148 FVHRSGRTGRAG--KEGTAILMFTSS 171 (470)
Q Consensus 148 y~qr~GR~gR~g--~~g~~i~l~~~~ 171 (470)
|.||+||+||.+ ..|++|+++.+.
T Consensus 528 F~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 528 FQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHHHhcccCCCCcccCceEEEEecCC
Confidence 999999999987 669999998764
No 90
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.64 E-value=3.3e-16 Score=152.25 Aligned_cols=175 Identities=22% Similarity=0.362 Sum_probs=135.4
Q ss_pred CEEeecCCHHHHHHHH--HHcCCCcEEEeecccccccccceEEEEEEc---CcccHHHHHHHHHH-HHc-----------
Q 012133 1 MLFSATMPSWVKKLSR--KYLDNPLNIDLVGNQDEKLAEGIKLYAIST---TATSKRTILSDLIT-VYA----------- 63 (470)
Q Consensus 1 llfSATlp~~i~~l~~--~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~---~~~~k~~~l~~ll~-~~~----------- 63 (470)
|.++||....|++-+- .-|++|+.|--. +....++ +|-.. .-++-...|.++.. .+.
T Consensus 180 vALTATA~~~VqEDi~~qL~L~~PVAiFkT----P~FR~NL--FYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~ 253 (641)
T KOG0352|consen 180 VALTATANAKVQEDIAFQLKLRNPVAIFKT----PTFRDNL--FYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKT 253 (641)
T ss_pred EEeecccChhHHHHHHHHHhhcCcHHhccC----cchhhhh--hHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCC
Confidence 3579999888877333 346688766321 1111221 11100 01233344444332 221
Q ss_pred CCCeEEEEeCchHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCC
Q 012133 64 KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP 142 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p 142 (470)
..+--||||.|++.|++++-.|. .++.+..+|.+|...+|.++.++|.++++.||+||.....|+|-|+|.+|||+++|
T Consensus 254 ~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~ 333 (641)
T KOG0352|consen 254 FTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPS 333 (641)
T ss_pred cCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCch
Confidence 12457999999999999999998 48999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHH
Q 012133 143 NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 181 (470)
Q Consensus 143 ~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~ 181 (470)
.++..|.|.+||+||.|+...|-++|..++...+..|.+
T Consensus 334 qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 334 QNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred hhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 999999999999999999999999999998877776643
No 91
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.64 E-value=3.6e-15 Score=147.24 Aligned_cols=235 Identities=16% Similarity=0.274 Sum_probs=177.6
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHH-HHHHH--cCCCeEEEEeCchHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD-LITVY--AKGGKTIVFTQTKRD 77 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~-ll~~~--~~~~~~lVF~~t~~~ 77 (470)
|+||||+... -.+.|+.++..+.+.+ ...++.+|...+..+.+++..+ +++.+ ...+.+|||.+..++
T Consensus 195 vvmSatl~a~---Kfq~yf~n~Pll~vpg------~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeee 265 (699)
T KOG0925|consen 195 VVMSATLDAE---KFQRYFGNAPLLAVPG------THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEE 265 (699)
T ss_pred EEeecccchH---HHHHHhCCCCeeecCC------CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHH
Confidence 5799998754 3567888888887743 2346668877777777655444 44443 456899999999999
Q ss_pred HHHHHHHHhcC----------CcEEEEeCCCCHHHHHHHHcccccC-----CeeEEEecccccccCCCCCccEEEEec--
Q 012133 78 ADEVSLALTSI----------IASEALHGDISQHQRERTLNGFRQG-----KFTVLVATDVAARGLDIPNVDLIIHYE-- 140 (470)
Q Consensus 78 ~~~l~~~l~~~----------~~~~~lhg~~~~~~R~~~~~~f~~g-----~~~iLVaTdv~~~Gidip~v~~VI~~~-- 140 (470)
++..++.+... +.|.+|| ++++..+++..... ..+|+|+|++++..+.|+.|.+||+-+
T Consensus 266 Ie~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~ 341 (699)
T KOG0925|consen 266 IEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFS 341 (699)
T ss_pred HHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchh
Confidence 99988888631 5789999 55566666665431 368999999999999999999999533
Q ss_pred ----------------CCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCccccCCCCHHHHHHHHHH
Q 012133 141 ----------------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 204 (470)
Q Consensus 141 ----------------~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~ 204 (470)
-|.|..+-.||.||+||. ++|+|+.||+++.. + ..+.+.+.++++++.+.
T Consensus 342 kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~~~----------~---~em~~~typeilrsNL~ 407 (699)
T KOG0925|consen 342 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF----------E---KEMQPQTYPEILRSNLS 407 (699)
T ss_pred hhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHHhh----------h---hcCCCCCcHHHHHHhhH
Confidence 366888889999999998 79999999987432 1 12344567899999999
Q ss_pred HHHHHHcccCccchhhhHHHHHHHHHhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEE
Q 012133 205 QVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 267 (470)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~~~a~~l~~~~~~~~l~~al~~l~~~~~~~~~r~l~~~~~~~~~~~ 267 (470)
.++..|+++..+++-.| ++++.+.+|.++.||..|.-+.+......|+....-|..++
T Consensus 408 s~VL~LKklgI~dlvhf-----dfmDpPAPEtLMrALE~LnYLaaLdDdGnLT~lG~imSEFP 465 (699)
T KOG0925|consen 408 STVLQLKKLGIDDLVHF-----DFMDPPAPETLMRALEVLNYLAALDDDGNLTSLGEIMSEFP 465 (699)
T ss_pred HHHHHHHhcCcccccCC-----cCCCCCChHHHHHHHHHhhhhhhhCCCcccchhhhhhhcCC
Confidence 99999999988887777 78888999999999999886666666666665444444333
No 92
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.62 E-value=1.8e-14 Score=149.41 Aligned_cols=166 Identities=20% Similarity=0.278 Sum_probs=127.9
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchH----
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKR---- 76 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~---- 76 (470)
|+||||.-+....+...---|-..|+- -+.-...|+.+.+ +.+.+.+++..+.+...++.++.|.||-.+
T Consensus 415 LvMTATPIPRTLAlt~fgDldvS~IdE----lP~GRkpI~T~~i--~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~ 488 (677)
T COG1200 415 LVMTATPIPRTLALTAFGDLDVSIIDE----LPPGRKPITTVVI--PHERRPEVYERIREEIAKGRQAYVVCPLIEESEK 488 (677)
T ss_pred EEEeCCCchHHHHHHHhccccchhhcc----CCCCCCceEEEEe--ccccHHHHHHHHHHHHHcCCEEEEEecccccccc
Confidence 589999766554444322223333321 1222244555544 346777778888777778889999998765
Q ss_pred ----HHHHHHHHHhc---CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCC-ChhHH
Q 012133 77 ----DADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN-DPETF 148 (470)
Q Consensus 77 ----~~~~l~~~l~~---~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~-~~~~y 148 (470)
.|+++++.|.. .+.+..+||.|+.+++++++++|++++++|||||.|.+.|||+|+.+++|.++.-. -..++
T Consensus 489 l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQL 568 (677)
T COG1200 489 LELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQL 568 (677)
T ss_pred chhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHH
Confidence 45566677764 35699999999999999999999999999999999999999999999988887654 78899
Q ss_pred HHHhcccCCCCCCCeEEEeeChhh
Q 012133 149 VHRSGRTGRAGKEGTAILMFTSSQ 172 (470)
Q Consensus 149 ~qr~GR~gR~g~~g~~i~l~~~~~ 172 (470)
.|-.||+||...+..|++++.+..
T Consensus 569 HQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 569 HQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred HHhccccCCCCcceEEEEEeCCCC
Confidence 999999999999999999999866
No 93
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.59 E-value=2.2e-14 Score=136.54 Aligned_cols=175 Identities=19% Similarity=0.290 Sum_probs=124.6
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHH------HHHHHHHH-HcCCCeEEEEeC
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT------ILSDLITV-YAKGGKTIVFTQ 73 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~------~l~~ll~~-~~~~~~~lVF~~ 73 (470)
|.+|||.|+++++-+..- +-..+.+.. +-+..+..+..+...-++..++. .|..+|+. ...+.++|||++
T Consensus 237 IylTATp~k~l~r~~~~g--~~~~~klp~-RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p 313 (441)
T COG4098 237 IYLTATPTKKLERKILKG--NLRILKLPA-RFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFP 313 (441)
T ss_pred EEEecCChHHHHHHhhhC--CeeEeecch-hhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEec
Confidence 578999998866544322 222344332 22333334444555555544431 34455543 345679999999
Q ss_pred chHHHHHHHHHHhcC---CcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEE-ecC-CCChhHH
Q 012133 74 TKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH-YEL-PNDPETF 148 (470)
Q Consensus 74 t~~~~~~l~~~l~~~---~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~-~~~-p~~~~~y 148 (470)
+.+..++++..|++. ..+..+|+. ...|.+.+++||+|+++|||+|.+++||+.+|+|+++|. ..- -.+.+.+
T Consensus 314 ~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaL 391 (441)
T COG4098 314 EIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESAL 391 (441)
T ss_pred chHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHH
Confidence 999999999999754 346788987 667899999999999999999999999999999998664 332 2488999
Q ss_pred HHHhcccCCCC--CCCeEEEeeChhhHHHHHHHH
Q 012133 149 VHRSGRTGRAG--KEGTAILMFTSSQRRTVRSLE 180 (470)
Q Consensus 149 ~qr~GR~gR~g--~~g~~i~l~~~~~~~~~~~i~ 180 (470)
+|.+||+||.- ..|.++.|-......+.+...
T Consensus 392 VQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~k 425 (441)
T COG4098 392 VQIAGRVGRSLERPTGDVLFFHYGKSKAMKQARK 425 (441)
T ss_pred HHHhhhccCCCcCCCCcEEEEeccchHHHHHHHH
Confidence 99999999954 468888887776655555443
No 94
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=9.2e-15 Score=151.53 Aligned_cols=159 Identities=21% Similarity=0.323 Sum_probs=115.7
Q ss_pred EEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecC--------CC----------ChhHHHHHh
Q 012133 91 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL--------PN----------DPETFVHRS 152 (470)
Q Consensus 91 ~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~--------p~----------~~~~y~qr~ 152 (470)
|.+|++-|+.+.+.++++....|..-++|||+||+..|.||.|.+||+++. -. |..+--||+
T Consensus 607 vLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRA 686 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRA 686 (1172)
T ss_pred EeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhc
Confidence 677889999999999999999999999999999999999999999995442 22 344457999
Q ss_pred cccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHHHHHHHcccCccchhhhHHHHHHHHHhh
Q 012133 153 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEK 232 (470)
Q Consensus 153 GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~l~~~~ 232 (470)
||+||.| +|+||.||+..-. ...|+.. +.++|+..-++.++..++.++...+..| .+-..+
T Consensus 687 GRAGRtg-pGHcYRLYSSAVf----------~~~Fe~f---S~PEIlk~Pve~lvLqMKsMnI~kVvnF-----PFPtpP 747 (1172)
T KOG0926|consen 687 GRAGRTG-PGHCYRLYSSAVF----------SNDFEEF---SLPEILKKPVESLVLQMKSMNIDKVVNF-----PFPTPP 747 (1172)
T ss_pred cccCCCC-CCceeehhhhHHh----------hcchhhh---ccHHHhhCcHHHHHHHHHhcCccceecC-----CCCCCc
Confidence 9999995 9999999987322 1123322 3568889999999999999887776665 222334
Q ss_pred CHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEE
Q 012133 233 GTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 268 (470)
Q Consensus 233 ~~~~l~~al~~l~~~~~~~~~r~l~~~~~~~~~~~~ 268 (470)
+..+|.+|.-.|.-+.+......++..+..|..+++
T Consensus 748 d~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPl 783 (1172)
T KOG0926|consen 748 DRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPL 783 (1172)
T ss_pred cHHHHHHHHHHHHHhccccccCCcccccchhccccc
Confidence 456676666666555554444445544444444444
No 95
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.54 E-value=1.9e-14 Score=112.71 Aligned_cols=80 Identities=53% Similarity=0.867 Sum_probs=74.3
Q ss_pred HHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCC
Q 012133 80 EVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 158 (470)
Q Consensus 80 ~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~ 158 (470)
.+++.|.. .+.+..+|+++++++|..+++.|+++...|||+|+++++|+|+|++++||.+++|++...|+|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 45566654 68899999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 012133 159 G 159 (470)
Q Consensus 159 g 159 (470)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 4
No 96
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.53 E-value=1.3e-13 Score=144.61 Aligned_cols=94 Identities=27% Similarity=0.432 Sum_probs=78.1
Q ss_pred HHHHHHHHhc---CCcEEEEeCCCCHHHH--HHHHcccccCCeeEEEecccccccCCCCCccEEE--EecC----CC---
Q 012133 78 ADEVSLALTS---IIASEALHGDISQHQR--ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII--HYEL----PN--- 143 (470)
Q Consensus 78 ~~~l~~~l~~---~~~~~~lhg~~~~~~R--~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI--~~~~----p~--- 143 (470)
++++++.|.+ ..++..+|+++++.++ ++++++|++++.+|||+|+++++|+|+|+|++|+ ++|. |.
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra 350 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRA 350 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccch
Confidence 5777788775 3578999999987766 8999999999999999999999999999999885 5664 32
Q ss_pred ---ChhHHHHHhcccCCCCCCCeEEEeeChh
Q 012133 144 ---DPETFVHRSGRTGRAGKEGTAILMFTSS 171 (470)
Q Consensus 144 ---~~~~y~qr~GR~gR~g~~g~~i~l~~~~ 171 (470)
....|+|++||+||.++.|.+++.....
T Consensus 351 ~E~~~~ll~q~~GRagR~~~~g~viiqt~~p 381 (505)
T TIGR00595 351 AERGFQLLTQVAGRAGRAEDPGQVIIQTYNP 381 (505)
T ss_pred HHHHHHHHHHHHhccCCCCCCCEEEEEeCCC
Confidence 2467899999999999999998765433
No 97
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.51 E-value=1.5e-12 Score=130.64 Aligned_cols=133 Identities=26% Similarity=0.417 Sum_probs=115.5
Q ss_pred cCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccc
Q 012133 46 TTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 124 (470)
Q Consensus 46 ~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~ 124 (470)
....+..+++..+.+....+.++||-+-|++.|+.|.++|.. ++++..+|+++..-+|.+++..+|.|.+.|||.-+++
T Consensus 427 p~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLL 506 (663)
T COG0556 427 PTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLL 506 (663)
T ss_pred cCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhh
Confidence 334466677777777677789999999999999999999985 8999999999999999999999999999999999999
Q ss_pred cccCCCCCccEEEEec-----CCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHH
Q 012133 125 ARGLDIPNVDLIIHYE-----LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179 (470)
Q Consensus 125 ~~Gidip~v~~VI~~~-----~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i 179 (470)
-+|||+|.|.+|...| +..|..++||-+||++|. -.|.+|++.+.-...+.+.|
T Consensus 507 REGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~iT~sM~~Ai 565 (663)
T COG0556 507 REGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAI 565 (663)
T ss_pred hccCCCcceeEEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEchhhhHHHHHHH
Confidence 9999999999998776 456899999999999996 68999999876555544444
No 98
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.51 E-value=1.6e-13 Score=149.00 Aligned_cols=119 Identities=29% Similarity=0.511 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc---C-----------------------------------CcEEE
Q 012133 52 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS---I-----------------------------------IASEA 93 (470)
Q Consensus 52 ~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~---~-----------------------------------~~~~~ 93 (470)
..++..++..+..++++||||+++..+...++.|.+ . ..+..
T Consensus 240 ~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gvaf 319 (766)
T COG1204 240 NLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAF 319 (766)
T ss_pred HHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccc
Confidence 455566667777889999999999999999888872 0 13567
Q ss_pred EeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEE----Eec-----CCCChhHHHHHhcccCCCC--CCC
Q 012133 94 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII----HYE-----LPNDPETFVHRSGRTGRAG--KEG 162 (470)
Q Consensus 94 lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI----~~~-----~p~~~~~y~qr~GR~gR~g--~~g 162 (470)
+|++|+.++|..+.+.|+.|.++|||||+.++.|+|+|.-.+|| -|+ .+.++-+|+|++||+||.| ..|
T Consensus 320 HhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G 399 (766)
T COG1204 320 HHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYG 399 (766)
T ss_pred cccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCC
Confidence 89999999999999999999999999999999999999877777 466 5668899999999999987 557
Q ss_pred eEEEeeCh
Q 012133 163 TAILMFTS 170 (470)
Q Consensus 163 ~~i~l~~~ 170 (470)
..+++.+.
T Consensus 400 ~~~i~~~~ 407 (766)
T COG1204 400 EAIILATS 407 (766)
T ss_pred cEEEEecC
Confidence 77777733
No 99
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.50 E-value=1.4e-12 Score=142.62 Aligned_cols=175 Identities=18% Similarity=0.293 Sum_probs=135.6
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
|-+|||.-+....++-.-++|-..|...+.. ...|+.|...- +..-+=..+++.+..++++-...|..+++++
T Consensus 746 LTLSATPIPRTL~Msm~GiRdlSvI~TPP~~----R~pV~T~V~~~---d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~ 818 (1139)
T COG1197 746 LTLSATPIPRTLNMSLSGIRDLSVIATPPED----RLPVKTFVSEY---DDLLIREAILRELLRGGQVFYVHNRVESIEK 818 (1139)
T ss_pred EEeeCCCCcchHHHHHhcchhhhhccCCCCC----CcceEEEEecC---ChHHHHHHHHHHHhcCCEEEEEecchhhHHH
Confidence 4589997777777777777787777653221 12333333222 2222223355666788999999999999999
Q ss_pred HHHHHhcC---CcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCC-ChhHHHHHhcccC
Q 012133 81 VSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN-DPETFVHRSGRTG 156 (470)
Q Consensus 81 l~~~l~~~---~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~-~~~~y~qr~GR~g 156 (470)
+++.|+.- ..+.+.||.|+..+-+.++..|-+++++|||||.+.+.|||||+++.+|..+.-. -..++.|..||+|
T Consensus 819 ~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVG 898 (1139)
T COG1197 819 KAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVG 898 (1139)
T ss_pred HHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccC
Confidence 99999863 5699999999999999999999999999999999999999999999988655443 6889999999999
Q ss_pred CCCCCCeEEEeeChh------hHHHHHHHHHH
Q 012133 157 RAGKEGTAILMFTSS------QRRTVRSLERD 182 (470)
Q Consensus 157 R~g~~g~~i~l~~~~------~~~~~~~i~~~ 182 (470)
|..+.+.||++|.+. ..++++.|++.
T Consensus 899 RS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~~ 930 (1139)
T COG1197 899 RSNKQAYAYFLYPPQKALTEDAEKRLEAIASF 930 (1139)
T ss_pred CccceEEEEEeecCccccCHHHHHHHHHHHhh
Confidence 999999999999853 34566666553
No 100
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.49 E-value=1.9e-13 Score=131.28 Aligned_cols=167 Identities=23% Similarity=0.359 Sum_probs=129.7
Q ss_pred EeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHH---HHHHHcCCCeEEEEeCchHHHH
Q 012133 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD---LITVYAKGGKTIVFTQTKRDAD 79 (470)
Q Consensus 3 fSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~---ll~~~~~~~~~lVF~~t~~~~~ 79 (470)
++||....|.+-++..+.-...++.... -..+++.+.... .+.+..+.+.+ +|+-.......||||-++++++
T Consensus 256 ltatatn~vl~d~k~il~ie~~~tf~a~---fnr~nl~yev~q-kp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~e 331 (695)
T KOG0353|consen 256 LTATATNHVLDDAKDILCIEAAFTFRAG---FNRPNLKYEVRQ-KPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCE 331 (695)
T ss_pred eehhhhcchhhHHHHHHhHHhhheeecc---cCCCCceeEeee-CCCChHHHHHHHHHHhccccCCCcceEEEeccccHH
Confidence 6788777777777766542222222111 112344433333 33344444444 4433335568899999999999
Q ss_pred HHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHH--------
Q 012133 80 EVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH-------- 150 (470)
Q Consensus 80 ~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~q-------- 150 (470)
+++..|+. ++.+..+|..|.+.++.-+-+.+-.++++|+|||-....|||-|+|.+||+..+|.+++.|.|
T Consensus 332 kva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillr 411 (695)
T KOG0353|consen 332 KVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLR 411 (695)
T ss_pred HHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHH
Confidence 99999985 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----------------------------------HhcccCCCCCCCeEEEeeChhhH
Q 012133 151 -----------------------------------RSGRTGRAGKEGTAILMFTSSQR 173 (470)
Q Consensus 151 -----------------------------------r~GR~gR~g~~g~~i~l~~~~~~ 173 (470)
..||+||.+.+..||++|.-.+.
T Consensus 412 mtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 412 MTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADI 469 (695)
T ss_pred HhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHH
Confidence 78999999999999999876554
No 101
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.48 E-value=5.8e-13 Score=144.53 Aligned_cols=100 Identities=23% Similarity=0.366 Sum_probs=81.4
Q ss_pred HHHHHHHHHhc---CCcEEEEeCCCCH--HHHHHHHcccccCCeeEEEecccccccCCCCCccEEE--EecCCCCh----
Q 012133 77 DADEVSLALTS---IIASEALHGDISQ--HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII--HYELPNDP---- 145 (470)
Q Consensus 77 ~~~~l~~~l~~---~~~~~~lhg~~~~--~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI--~~~~p~~~---- 145 (470)
-++.+++.|.+ ...+..+|+++.+ .++++++++|++++++|||+|+++++|+|+|+|++|+ ++|.+.+.
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfr 517 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFR 517 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccc
Confidence 45677777775 4679999999974 5789999999999999999999999999999999985 44544332
Q ss_pred ------hHHHHHhcccCCCCCCCeEEEeeChhhHHHH
Q 012133 146 ------ETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 176 (470)
Q Consensus 146 ------~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~ 176 (470)
..|+|++||+||.++.|.+++.....+...+
T Consensus 518 a~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~ 554 (679)
T PRK05580 518 ASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVI 554 (679)
T ss_pred hHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHH
Confidence 5789999999999999999987665443333
No 102
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.47 E-value=2.4e-13 Score=148.81 Aligned_cols=169 Identities=22% Similarity=0.252 Sum_probs=118.0
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccH--HHHHHHHHHHHcCCCeEEEEeCchHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK--RTILSDLITVYAKGGKTIVFTQTKRDA 78 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k--~~~l~~ll~~~~~~~~~lVF~~t~~~~ 78 (470)
||||||+|+..++..+.++.+...+.......................... ...+..+.....+..+++|.|||+..|
T Consensus 374 ll~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~A 453 (733)
T COG1203 374 LLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRA 453 (733)
T ss_pred EEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHH
Confidence 689999999999988887765554433211000000000001101111111 123344445556778999999999999
Q ss_pred HHHHHHHhcCC-cEEEEeCCCCHHHHHHHHcccc----cCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhc
Q 012133 79 DEVSLALTSII-ASEALHGDISQHQRERTLNGFR----QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 153 (470)
Q Consensus 79 ~~l~~~l~~~~-~~~~lhg~~~~~~R~~~~~~f~----~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~G 153 (470)
.++++.|+... .+..||+.+...+|.+.++.++ .....|+|||+|++.|+|+. .+++|-- +..+++++||+|
T Consensus 454 ie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe--~aPidSLIQR~G 530 (733)
T COG1203 454 IELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITE--LAPIDSLIQRAG 530 (733)
T ss_pred HHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeec--CCCHHHHHHHHH
Confidence 99999999644 5999999999999998888554 45789999999999999995 6776642 456789999999
Q ss_pred ccCCCC--CCCeEEEeeChhh
Q 012133 154 RTGRAG--KEGTAILMFTSSQ 172 (470)
Q Consensus 154 R~gR~g--~~g~~i~l~~~~~ 172 (470)
|++|.| ..+..+++.....
T Consensus 531 Rv~R~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 531 RVNRHGKKENGKIYVYNDEER 551 (733)
T ss_pred HHhhcccccCCceeEeecccC
Confidence 999999 5677777765443
No 103
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.47 E-value=1.2e-12 Score=141.27 Aligned_cols=165 Identities=19% Similarity=0.182 Sum_probs=124.1
Q ss_pred EeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHH-HHHHHcCCCeEEEEeCchHHHHHH
Q 012133 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD-LITVYAKGGKTIVFTQTKRDADEV 81 (470)
Q Consensus 3 fSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~-ll~~~~~~~~~lVF~~t~~~~~~l 81 (470)
||.|...+..++.+-|-.+.+.|.. . .+....... -.+......|..++.. +...+..+.++||||+|++.++.|
T Consensus 385 MTGTa~te~~Ef~~iY~l~Vv~IPt--n-kp~~R~d~~-d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~l 460 (896)
T PRK13104 385 MTGTADTEAYEFQQIYNLEVVVIPT--N-RSMIRKDEA-DLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFL 460 (896)
T ss_pred CCCCChhHHHHHHHHhCCCEEECCC--C-CCcceecCC-CeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHH
Confidence 6788877766676666444333321 1 111111111 1222334556655544 445667788999999999999999
Q ss_pred HHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCc---------------------------
Q 012133 82 SLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV--------------------------- 133 (470)
Q Consensus 82 ~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v--------------------------- 133 (470)
+..|.+ ++++..||+.+.+.+++.+.+.|+.| .|+||||+|+||+||.-=
T Consensus 461 s~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (896)
T PRK13104 461 SQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQ 538 (896)
T ss_pred HHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhh
Confidence 999985 89999999999999999999999998 499999999999999521
Q ss_pred -----------cEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhH
Q 012133 134 -----------DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 173 (470)
Q Consensus 134 -----------~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~ 173 (470)
=+||-...+.|..-=-|-.||+||.|.+|.+.+|++-+|.
T Consensus 539 ~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 539 KRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred hhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 1688888888888889999999999999999999887653
No 104
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.44 E-value=1.3e-12 Score=140.97 Aligned_cols=164 Identities=21% Similarity=0.195 Sum_probs=127.0
Q ss_pred EeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHH-HcCCCeEEEEeCchHHHHHH
Q 012133 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEV 81 (470)
Q Consensus 3 fSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~-~~~~~~~lVF~~t~~~~~~l 81 (470)
||.|...+...+.+-|--+.+.|.. . .+....... -.+.....+|..+|...+.. +....++||||+|++.++.|
T Consensus 371 mTGTa~te~~E~~~iY~l~vv~IPt--n-kp~~r~d~~-d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~L 446 (830)
T PRK12904 371 MTGTADTEAEEFREIYNLDVVVIPT--N-RPMIRIDHP-DLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELL 446 (830)
T ss_pred cCCCcHHHHHHHHHHhCCCEEEcCC--C-CCeeeeeCC-CeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHH
Confidence 6888877777777766444333321 1 111111111 12233445777777777744 45678999999999999999
Q ss_pred HHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCc---------------------------
Q 012133 82 SLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV--------------------------- 133 (470)
Q Consensus 82 ~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v--------------------------- 133 (470)
++.|.+ ++++..||+. +.+|+..+.+|+.+...|+||||+|+||+||+-=
T Consensus 447 s~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (830)
T PRK12904 447 SKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQ 524 (830)
T ss_pred HHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHh
Confidence 999985 7999999996 8899999999999999999999999999999742
Q ss_pred -----------cEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhh
Q 012133 134 -----------DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 172 (470)
Q Consensus 134 -----------~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~ 172 (470)
=|||-...|.|..---|-.||+||.|.+|.+-+|++-+|
T Consensus 525 ~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 525 EEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred hhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 168888899999999999999999999999999988765
No 105
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.41 E-value=5.5e-12 Score=135.96 Aligned_cols=165 Identities=20% Similarity=0.245 Sum_probs=123.9
Q ss_pred EeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHH-HHHHHHHHcCCCeEEEEeCchHHHHHH
Q 012133 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTI-LSDLITVYAKGGKTIVFTQTKRDADEV 81 (470)
Q Consensus 3 fSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~-l~~ll~~~~~~~~~lVF~~t~~~~~~l 81 (470)
||.|.-.+..++.+-|--+.+.|.. . .+.......-. +......|..+ +..+...+..+.++||||+|++.++.|
T Consensus 390 MTGTa~te~~Ef~~iY~l~Vv~IPT--n-kp~~R~d~~d~-iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~l 465 (908)
T PRK13107 390 MTGTADTEAFEFQHIYGLDTVVVPT--N-RPMVRKDMADL-VYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELL 465 (908)
T ss_pred ccCCChHHHHHHHHHhCCCEEECCC--C-CCccceeCCCc-EEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHH
Confidence 6778777766666666444333321 1 11111111111 12233455444 445555667788999999999999999
Q ss_pred HHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCC----------------------------
Q 012133 82 SLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN---------------------------- 132 (470)
Q Consensus 82 ~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~---------------------------- 132 (470)
+..|.+ ++++..||+.+++.+++.+.+.|+.|. |+||||+|+||+||.-
T Consensus 466 s~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (908)
T PRK13107 466 ARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQI 543 (908)
T ss_pred HHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHh
Confidence 999985 899999999999999999999999987 9999999999999962
Q ss_pred ----c-----cEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhH
Q 012133 133 ----V-----DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 173 (470)
Q Consensus 133 ----v-----~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~ 173 (470)
| =+||-...+.|..-=-|-.||+||.|.+|.+.+|++-+|.
T Consensus 544 ~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 544 RHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred hHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 1 1688888888988889999999999999999999887664
No 106
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.35 E-value=1.6e-11 Score=133.17 Aligned_cols=174 Identities=21% Similarity=0.315 Sum_probs=123.9
Q ss_pred EEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCccc---HHHH-----HHHHHHHHcCCCeEEEEeC
Q 012133 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS---KRTI-----LSDLITVYAKGGKTIVFTQ 73 (470)
Q Consensus 2 lfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~---k~~~-----l~~ll~~~~~~~~~lVF~~ 73 (470)
=+|||||+ -.+.+.....++.-+-.....-. +..+.+.++-+.... +.++ ..++++...+ .++|||+-
T Consensus 479 GLSATLPN-y~DV~~Fl~v~~~glf~fd~syR--pvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk-~qVLVFVH 554 (1674)
T KOG0951|consen 479 GLSATLPN-YEDVASFLRVDPEGLFYFDSSYR--PVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGK-NQVLVFVH 554 (1674)
T ss_pred eecccCCc-hhhhHHHhccCcccccccCcccC--cCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCC-CcEEEEEE
Confidence 37999996 34455433345544433222222 345666777655432 2222 2334444333 89999999
Q ss_pred chHHHHHHHHHHhcC--------------------------------------CcEEEEeCCCCHHHHHHHHcccccCCe
Q 012133 74 TKRDADEVSLALTSI--------------------------------------IASEALHGDISQHQRERTLNGFRQGKF 115 (470)
Q Consensus 74 t~~~~~~l~~~l~~~--------------------------------------~~~~~lhg~~~~~~R~~~~~~f~~g~~ 115 (470)
+++++.+.|..++.. +.+.++|++|+..+|..+.+.|++|.+
T Consensus 555 sRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~i 634 (1674)
T KOG0951|consen 555 SRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHI 634 (1674)
T ss_pred echHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCce
Confidence 999888888777511 357889999999999999999999999
Q ss_pred eEEEecccccccCCCCCccEEE----EecCC------CChhHHHHHhcccCCCC--CCCeEEEeeChhhHHHHHHH
Q 012133 116 TVLVATDVAARGLDIPNVDLII----HYELP------NDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTVRSL 179 (470)
Q Consensus 116 ~iLVaTdv~~~Gidip~v~~VI----~~~~p------~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~~~~~~~~i 179 (470)
+|||+|-.+++|+++|.-+++| .|++- .++.+.+||.||+||.. ..|..+++....+..++..+
T Consensus 635 qvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~ 710 (1674)
T KOG0951|consen 635 QVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSL 710 (1674)
T ss_pred eEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHh
Confidence 9999999999999999988888 46643 47889999999999976 55777777766665555443
No 107
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.34 E-value=6.4e-12 Score=139.47 Aligned_cols=136 Identities=18% Similarity=0.355 Sum_probs=112.3
Q ss_pred cccHHHHHHHHHHHH-cCCCeEEEEeCchHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHcccccC---CeeEEEecc
Q 012133 48 ATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQG---KFTVLVATD 122 (470)
Q Consensus 48 ~~~k~~~l~~ll~~~-~~~~~~lVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~f~~g---~~~iLVaTd 122 (470)
...|+.+|..+|..+ ..+.++|||+......+.|.+.|. .++....|||.++..+|..+++.|... ...+|++|.
T Consensus 469 ~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTr 548 (1033)
T PLN03142 469 NSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTR 548 (1033)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEecc
Confidence 357888888888655 356799999999999999999987 478999999999999999999999753 356789999
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEE--EeeChh--hHHHHHHHHHHh
Q 012133 123 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAI--LMFTSS--QRRTVRSLERDV 183 (470)
Q Consensus 123 v~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i--~l~~~~--~~~~~~~i~~~~ 183 (470)
++..|||+..+++||+||+||++..+.|+++|+.|.|+...|. .|++.. |...++...+.+
T Consensus 549 AGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl 613 (1033)
T PLN03142 549 AGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKL 613 (1033)
T ss_pred ccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999775544 444442 344555444443
No 108
>PF08152 GUCT: GUCT (NUC152) domain; InterPro: IPR012562 This is the C-terminal domain found in the RNA helicase II / Gu protein family [].; GO: 0003723 RNA binding, 0004386 helicase activity, 0005524 ATP binding, 0005634 nucleus; PDB: 2E29_A.
Probab=99.30 E-value=3.8e-12 Score=102.65 Aligned_cols=95 Identities=38% Similarity=0.563 Sum_probs=53.4
Q ss_pred CCCCCCCCcccccCCCCeEEEEEeeCCccccCCcchhhHHhHhhhhcCc-CcCccccEEEeecCccceeEeecCHHHHHH
Q 012133 246 GFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPT-AADEIGKIHIIADDRVQGAVFDLPEEIAKE 324 (470)
Q Consensus 246 ~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~-~~~~Ig~I~i~~~~~~~ga~fdv~~~~a~~ 324 (470)
|+++ ++.|||+++.++++|+.+.+..+ .-++..++..|.+..+. ..++|++|++++|. +|++||||++.+++
T Consensus 1 G~t~-~~~RSLLt~~~g~vTl~l~~~~~----i~~~~y~~~~L~~~L~e~~~~~v~~m~l~~d~--~GavFDvP~~~~~~ 73 (97)
T PF08152_consen 1 GYTE-IKQRSLLTSEEGFVTLQLTCSRE----IRSPGYAWRILRRQLSEEIADKVKGMTLLKDK--MGAVFDVPSEIAEE 73 (97)
T ss_dssp S-S--------------EEEEEEE-SS------SSTHHHHHHHHHHS-HHHHTT-EEEEE-TTS--SEEEEEEEHHHHHH
T ss_pred CCCC-CCccccccCCCCCEEEEEEcCCc----CCCchhHHHHHHHhcCHHHHHhhCcEEEecCC--CEEEEEChHHHHHH
Confidence 4566 78899999999999999988863 45678888888877654 56789999999986 69999999999999
Q ss_pred HHhhcCCC-CCeEEEeccCCCccC
Q 012133 325 LLNKQIPP-GNTISKITKLPALQD 347 (470)
Q Consensus 325 i~~~~~~~-g~~i~~~~~lP~~~~ 347 (470)
+++.+... ++.++++++||++++
T Consensus 74 ~~~~~~~~~~~~l~v~~~LPeL~e 97 (97)
T PF08152_consen 74 FLAKWEDSRGWQLSVATELPELQE 97 (97)
T ss_dssp HHHH--SS-S-EEE----------
T ss_pred HHHhCcccCCcEEEEcccCcCccC
Confidence 99998875 899999999999974
No 109
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.30 E-value=1.4e-11 Score=131.28 Aligned_cols=116 Identities=29% Similarity=0.488 Sum_probs=98.3
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhcC---------------------------------------CcEEEEeCCCCHHHHH
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTSI---------------------------------------IASEALHGDISQHQRE 104 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~~---------------------------------------~~~~~lhg~~~~~~R~ 104 (470)
++.++||||++++.|+.++..+.+. +.+.++|.+++.++|+
T Consensus 459 e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~ 538 (1008)
T KOG0950|consen 459 EGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEERE 538 (1008)
T ss_pred cCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHH
Confidence 4457999999999999988666421 2578899999999999
Q ss_pred HHHcccccCCeeEEEecccccccCCCCCccEEEEe---cC-CCChhHHHHHhcccCCCC--CCCeEEEeeChhhHHHHHH
Q 012133 105 RTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY---EL-PNDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTVRS 178 (470)
Q Consensus 105 ~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~---~~-p~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~~~~~~~~ 178 (470)
.+...|++|.+.|++||+.++.|+++|...++|-. .. +.+.-+|.||+|||||+| ..|.+|+++...+......
T Consensus 539 ~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~ 618 (1008)
T KOG0950|consen 539 IIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRE 618 (1008)
T ss_pred HHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHH
Confidence 99999999999999999999999999999988843 22 347889999999999997 6699999999988766654
Q ss_pred H
Q 012133 179 L 179 (470)
Q Consensus 179 i 179 (470)
+
T Consensus 619 l 619 (1008)
T KOG0950|consen 619 L 619 (1008)
T ss_pred H
Confidence 4
No 110
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.29 E-value=8.3e-11 Score=126.07 Aligned_cols=176 Identities=19% Similarity=0.302 Sum_probs=121.4
Q ss_pred EEeecCCHHHHHHHHHHcCCCc-EEEeecccccccccceEEEEEEcCcc---cHHHH-----HHHHHHHHcCCCeEEEEe
Q 012133 2 LFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTAT---SKRTI-----LSDLITVYAKGGKTIVFT 72 (470)
Q Consensus 2 lfSATlp~~i~~l~~~~l~~p~-~i~~~~~~~~~~~~~i~~~~~~~~~~---~k~~~-----l~~ll~~~~~~~~~lVF~ 72 (470)
-+|||+|+ +++++...--+|. -+..-...-. +..+.+..+-.+.. ...+. ...+++.+..+.+++|||
T Consensus 280 gLSATlPN-~eDvA~fL~vn~~~glfsFd~~yR--PvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFv 356 (1230)
T KOG0952|consen 280 GLSATLPN-YEDVARFLRVNPYAGLFSFDQRYR--PVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFV 356 (1230)
T ss_pred EeeccCCC-HHHHHHHhcCCCccceeeeccccc--ccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEE
Confidence 48999995 6777764333432 2222111111 22344444433332 22222 233455666788999999
Q ss_pred CchHHHHHHHHHHhcC------------------------CcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccC
Q 012133 73 QTKRDADEVSLALTSI------------------------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 128 (470)
Q Consensus 73 ~t~~~~~~l~~~l~~~------------------------~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gi 128 (470)
.++..+...|+.|.+. .....+|++|..++|..+.+.|..|.++||+||..++.|+
T Consensus 357 hsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGV 436 (1230)
T KOG0952|consen 357 HSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGV 436 (1230)
T ss_pred ecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeecc
Confidence 9999999998888531 1356789999999999999999999999999999999999
Q ss_pred CCCCccEEE----EecCCC------ChhHHHHHhcccCCCC--CCCeEEEeeChhhHHHHHHHH
Q 012133 129 DIPNVDLII----HYELPN------DPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTVRSLE 180 (470)
Q Consensus 129 dip~v~~VI----~~~~p~------~~~~y~qr~GR~gR~g--~~g~~i~l~~~~~~~~~~~i~ 180 (470)
++|+-.++| .||.-. ..-+.+|..||+||.. ..|.++++.+.+....+..|.
T Consensus 437 NLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl 500 (1230)
T KOG0952|consen 437 NLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLL 500 (1230)
T ss_pred CCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHH
Confidence 999765555 244322 4556799999999965 779999998876655555543
No 111
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.29 E-value=3.9e-11 Score=132.28 Aligned_cols=165 Identities=21% Similarity=0.392 Sum_probs=126.8
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcC---------cccHHHHHHHHHHH-HcCCCeEEE
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT---------ATSKRTILSDLITV-YAKGGKTIV 70 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~---------~~~k~~~l~~ll~~-~~~~~~~lV 70 (470)
|+.|||+-..- .+++.+...+..+.+. +...+....++.+..+ ..++...+..++.. +..+-++||
T Consensus 236 i~~SAT~~np~-e~~~~l~~~~f~~~v~---~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~ 311 (851)
T COG1205 236 ICTSATLANPG-EFAEELFGRDFEVPVD---EDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLV 311 (851)
T ss_pred EEEeccccChH-HHHHHhcCCcceeecc---CCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEE
Confidence 56899997654 4566666655554432 2233444555555555 23555555555543 345679999
Q ss_pred EeCchHHHHHHHHHHh-----cC----CcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecC
Q 012133 71 FTQTKRDADEVSLALT-----SI----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 141 (470)
Q Consensus 71 F~~t~~~~~~l~~~l~-----~~----~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~ 141 (470)
|+.+++.++.++.... .. ..+..++++|...+|.+++..|++|+..++++|+.++-||||-+++.||.+..
T Consensus 312 F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~ 391 (851)
T COG1205 312 FFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGY 391 (851)
T ss_pred EEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCC
Confidence 9999999999963322 23 35888999999999999999999999999999999999999999999999999
Q ss_pred CC-ChhHHHHHhcccCCCCCCCeEEEeeC
Q 012133 142 PN-DPETFVHRSGRTGRAGKEGTAILMFT 169 (470)
Q Consensus 142 p~-~~~~y~qr~GR~gR~g~~g~~i~l~~ 169 (470)
|. +..+++||+||+||.++....++++.
T Consensus 392 P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 392 PGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred CCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 99 89999999999999987777777665
No 112
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.25 E-value=4.5e-11 Score=123.80 Aligned_cols=104 Identities=32% Similarity=0.521 Sum_probs=93.0
Q ss_pred HHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCC
Q 012133 53 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 131 (470)
Q Consensus 53 ~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip 131 (470)
..+..++..+....++|||+.++.+++.++..+.. .+ +..+.+..++.+|.++++.|+.+.+++||++.++.+|+|+|
T Consensus 271 ~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP 349 (442)
T COG1061 271 AAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIP 349 (442)
T ss_pred HHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCC
Confidence 33344444333457999999999999999999985 45 88999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCCChhHHHHHhcccCC
Q 012133 132 NVDLIIHYELPNDPETFVHRSGRTGR 157 (470)
Q Consensus 132 ~v~~VI~~~~p~~~~~y~qr~GR~gR 157 (470)
+++++|...+..++..|+||+||.-|
T Consensus 350 ~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 350 DADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred CCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 99999999999999999999999999
No 113
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.24 E-value=4.5e-10 Score=119.31 Aligned_cols=106 Identities=28% Similarity=0.400 Sum_probs=90.4
Q ss_pred CeEEEEeCchHHHHHHHHHHhcC----------------------------------------CcEEEEeCCCCHHHHHH
Q 012133 66 GKTIVFTQTKRDADEVSLALTSI----------------------------------------IASEALHGDISQHQRER 105 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~~----------------------------------------~~~~~lhg~~~~~~R~~ 105 (470)
-++||||-+++.|++.++.|... -.+.++||++-+--++-
T Consensus 568 LP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~ 647 (1248)
T KOG0947|consen 568 LPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEV 647 (1248)
T ss_pred CceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHH
Confidence 48999999999999999998631 13678999999999999
Q ss_pred HHcccccCCeeEEEecccccccCCCCCccEEEEec--------CCCChhHHHHHhcccCCCC--CCCeEEEeeChh
Q 012133 106 TLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE--------LPNDPETFVHRSGRTGRAG--KEGTAILMFTSS 171 (470)
Q Consensus 106 ~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~--------~p~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~ 171 (470)
+...|..|-++||+||..++.|||+|.-.+|+..= .--.+-.|.||+||+||.| .+|++|++....
T Consensus 648 VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 648 VELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred HHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 99999999999999999999999999888777311 1126789999999999988 779999987654
No 114
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.23 E-value=3.9e-10 Score=127.53 Aligned_cols=93 Identities=23% Similarity=0.404 Sum_probs=81.9
Q ss_pred CCeEEEEeCchHHHHHHHHHHhcC----------CcEEEEeCCCCHHHHHHHHcccccCCe-eEEEecccccccCCCCCc
Q 012133 65 GGKTIVFTQTKRDADEVSLALTSI----------IASEALHGDISQHQRERTLNGFRQGKF-TVLVATDVAARGLDIPNV 133 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~~----------~~~~~lhg~~~~~~R~~~~~~f~~g~~-~iLVaTdv~~~Gidip~v 133 (470)
.+++||||.++++|+.+++.|.+. ..+..+|++++ ++.+++++|+++.. +|||+++++.+|+|+|.|
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v 775 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSI 775 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccc
Confidence 479999999999999998887632 14667999986 46789999999876 699999999999999999
Q ss_pred cEEEEecCCCChhHHHHHhcccCCCC
Q 012133 134 DLIIHYELPNDPETFVHRSGRTGRAG 159 (470)
Q Consensus 134 ~~VI~~~~p~~~~~y~qr~GR~gR~g 159 (470)
++||.+.++.|...|+||+||+.|.-
T Consensus 776 ~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 776 CNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred cEEEEecCCCCHHHHHHHHhhhccCC
Confidence 99999999999999999999999963
No 115
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.22 E-value=2.5e-10 Score=115.08 Aligned_cols=200 Identities=19% Similarity=0.247 Sum_probs=132.8
Q ss_pred EeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCc---------ccHHHHHHHHH-HHHcCCCeEEEEe
Q 012133 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA---------TSKRTILSDLI-TVYAKGGKTIVFT 72 (470)
Q Consensus 3 fSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~---------~~k~~~l~~ll-~~~~~~~~~lVF~ 72 (470)
.|||+-..++-....+ +-..++++..... +..-+++.+..++ +.+.....+++ +....+-++|-||
T Consensus 457 ~~~~~K~~~~~~~~~~--~~~E~~Li~~DGS--Ps~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC 532 (1034)
T KOG4150|consen 457 GDTPYKDRTRLRSELA--NLSELELVTIDGS--PSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFC 532 (1034)
T ss_pred CCCCcCCHHHHHHHhc--CCcceEEEEecCC--CCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEec
Confidence 3677776665444433 2223333322211 3334555554432 12222223333 3334567999999
Q ss_pred CchHHHHHHHHHHhcC---------CcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCC
Q 012133 73 QTKRDADEVSLALTSI---------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN 143 (470)
Q Consensus 73 ~t~~~~~~l~~~l~~~---------~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~ 143 (470)
++++.|+.+....++- -.+..+.|+.+.++|.++...+-.|+..-+|||++++-||||-.++.|++.++|.
T Consensus 533 ~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~ 612 (1034)
T KOG4150|consen 533 PSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPG 612 (1034)
T ss_pred cHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCch
Confidence 9999999876655431 1255678999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHhcccCCCCCCCeEEEee--ChhhHHHHHHHHHHhCCCccccCCCCH-HHHHHHHHHHH
Q 012133 144 DPETFVHRSGRTGRAGKEGTAILMF--TSSQRRTVRSLERDVGCKFEFVSPPVV-EDVLESSAEQV 206 (470)
Q Consensus 144 ~~~~y~qr~GR~gR~g~~g~~i~l~--~~~~~~~~~~i~~~~~~~~~~~~~p~~-~~~~~~~~~~~ 206 (470)
+...+.|..||+||.+++..+++++ .|-+..++..-+......-..+.+... .-+++..++-+
T Consensus 613 S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~~N~~iL~~HlQCA 678 (1034)
T KOG4150|consen 613 SIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDSQNKHVLMQHLQCA 678 (1034)
T ss_pred hHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEEecccHHHHHHHHhHH
Confidence 9999999999999998887665544 456666666555555443333333333 33444444333
No 116
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.16 E-value=1.1e-10 Score=120.96 Aligned_cols=107 Identities=24% Similarity=0.425 Sum_probs=90.2
Q ss_pred CCeEEEEeCchHHHHHHHHHHhcC----------------------------------------CcEEEEeCCCCHHHHH
Q 012133 65 GGKTIVFTQTKRDADEVSLALTSI----------------------------------------IASEALHGDISQHQRE 104 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~~----------------------------------------~~~~~lhg~~~~~~R~ 104 (470)
..++|||+-++++|+.+|..+.+. -.+.++|++|-+--++
T Consensus 383 ~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE 462 (1041)
T KOG0948|consen 383 YLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKE 462 (1041)
T ss_pred CCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHH
Confidence 358999999999999999888641 0367789999999999
Q ss_pred HHHcccccCCeeEEEecccccccCCCCCccEEEE----ec---CCC-ChhHHHHHhcccCCCC--CCCeEEEeeChh
Q 012133 105 RTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE---LPN-DPETFVHRSGRTGRAG--KEGTAILMFTSS 171 (470)
Q Consensus 105 ~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~----~~---~p~-~~~~y~qr~GR~gR~g--~~g~~i~l~~~~ 171 (470)
.+.-.|.+|-+++|.||...+.|+|+|.-++|+- +| +.| +.-.|+|++||+||.| ..|.||++++..
T Consensus 463 ~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 463 VIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred HHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 9999999999999999999999999998877762 22 122 6778999999999988 569999998753
No 117
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.97 E-value=8.2e-09 Score=110.88 Aligned_cols=163 Identities=19% Similarity=0.229 Sum_probs=112.8
Q ss_pred EeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHH-HHHHHHcCCCeEEEEeCchHHHHHH
Q 012133 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS-DLITVYAKGGKTIVFTQTKRDADEV 81 (470)
Q Consensus 3 fSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~-~ll~~~~~~~~~lVF~~t~~~~~~l 81 (470)
||.|.-.+-.++.+-|-.+.+.|.. . .+.......- .+......|..++. .+...+..+.++||.|.|.+..+.|
T Consensus 367 MTGTA~te~~Ef~~iY~l~Vv~IPT--n-kP~~R~D~~d-~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~l 442 (925)
T PRK12903 367 MTGTAKTEEQEFIDIYNMRVNVVPT--N-KPVIRKDEPD-SIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETL 442 (925)
T ss_pred cCCCCHHHHHHHHHHhCCCEEECCC--C-CCeeeeeCCC-cEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHH
Confidence 6788766666666666443333321 1 1111111110 12233345554444 4555667788999999999999999
Q ss_pred HHHHhc-CCcEEEEeCCCCHHHHHHHHcccccC-CeeEEEecccccccCCCCCcc--------EEEEecCCCChhHHHHH
Q 012133 82 SLALTS-IIASEALHGDISQHQRERTLNGFRQG-KFTVLVATDVAARGLDIPNVD--------LIIHYELPNDPETFVHR 151 (470)
Q Consensus 82 ~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g-~~~iLVaTdv~~~Gidip~v~--------~VI~~~~p~~~~~y~qr 151 (470)
+..|.+ +++..+|++.- .+++..+-. +.| .-.|.|||++|.||.||.--. |||....|.+..---|-
T Consensus 443 s~~L~~~gi~h~vLNAk~--~e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQL 519 (925)
T PRK12903 443 HELLLEANIPHTVLNAKQ--NAREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQL 519 (925)
T ss_pred HHHHHHCCCCceeecccc--hhhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHH
Confidence 999985 78888998873 334433332 223 467999999999999996332 89999999999888999
Q ss_pred hcccCCCCCCCeEEEeeChhh
Q 012133 152 SGRTGRAGKEGTAILMFTSSQ 172 (470)
Q Consensus 152 ~GR~gR~g~~g~~i~l~~~~~ 172 (470)
.||+||.|.+|.+-+|++-.+
T Consensus 520 rGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 520 RGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred hcccccCCCCCcceEEEecch
Confidence 999999999999998888665
No 118
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.89 E-value=8.7e-09 Score=104.26 Aligned_cols=105 Identities=26% Similarity=0.377 Sum_probs=85.3
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc--CCcEEEEeCCCCHHHHHHHHccccc--CCeeEEEecccccccCCCCCccEEEEe
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDVAARGLDIPNVDLIIHY 139 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~R~~~~~~f~~--g~~~iLVaTdv~~~Gidip~v~~VI~~ 139 (470)
+.+.|||-. +++++..+...+.+ ...+.+|+|.||++.|.+.-..|.+ ++++||||||++.+|+|+ +|+-||.|
T Consensus 356 k~GDCvV~F-Skk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~ 433 (700)
T KOG0953|consen 356 KPGDCVVAF-SKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFY 433 (700)
T ss_pred CCCCeEEEe-ehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEe
Confidence 345665543 67788899998885 3559999999999999999999987 889999999999999999 68888877
Q ss_pred cCC---------CChhHHHHHhcccCCCC---CCCeEEEeeCh
Q 012133 140 ELP---------NDPETFVHRSGRTGRAG---KEGTAILMFTS 170 (470)
Q Consensus 140 ~~p---------~~~~~y~qr~GR~gR~g---~~g~~i~l~~~ 170 (470)
++- .+..+..|-+||+||.+ ..|.+.+|..+
T Consensus 434 sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~e 476 (700)
T KOG0953|consen 434 SLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSE 476 (700)
T ss_pred ecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHh
Confidence 653 46778899999999976 45777776544
No 119
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.88 E-value=5.4e-08 Score=103.27 Aligned_cols=164 Identities=18% Similarity=0.192 Sum_probs=114.3
Q ss_pred EeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHH-HHHHHHHcCCCeEEEEeCchHHHHHH
Q 012133 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL-SDLITVYAKGGKTIVFTQTKRDADEV 81 (470)
Q Consensus 3 fSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l-~~ll~~~~~~~~~lVF~~t~~~~~~l 81 (470)
||.|...+..++.+-|--+. +.+.. ..+........ .+......|..++ ..+.+.+..+.++||.|.+.+..+.|
T Consensus 368 MTGTa~t~~~Ef~~iY~l~V--v~IPt-nkp~~R~d~~d-~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~l 443 (764)
T PRK12326 368 MTGTAVAAGEQLRQFYDLGV--SVIPP-NKPNIREDEAD-RVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEEL 443 (764)
T ss_pred ecCCChhHHHHHHHHhCCcE--EECCC-CCCceeecCCC-ceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHH
Confidence 78888777777777665442 22221 11111111111 1222334555444 44556667888999999999999999
Q ss_pred HHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCC----------cc-----EEEEecCCCCh
Q 012133 82 SLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----------VD-----LIIHYELPNDP 145 (470)
Q Consensus 82 ~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~----------v~-----~VI~~~~p~~~ 145 (470)
+..|.+ +++..+|++.-...+-+.+-+.=+ .-.|.|||++|.||.||.- |. |||-...|.|.
T Consensus 444 s~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~--~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSr 521 (764)
T PRK12326 444 AERLRAAGVPAVVLNAKNDAEEARIIAEAGK--YGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSE 521 (764)
T ss_pred HHHHHhCCCcceeeccCchHhHHHHHHhcCC--CCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchH
Confidence 999985 789999988744333222222212 3579999999999999962 22 79999999999
Q ss_pred hHHHHHhcccCCCCCCCeEEEeeChhh
Q 012133 146 ETFVHRSGRTGRAGKEGTAILMFTSSQ 172 (470)
Q Consensus 146 ~~y~qr~GR~gR~g~~g~~i~l~~~~~ 172 (470)
..-.|-.||+||.|.+|.+.+|++-++
T Consensus 522 RID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 522 RLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred HHHHHHhcccccCCCCCceeEEEEcch
Confidence 999999999999999999999988766
No 120
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.78 E-value=5.7e-08 Score=101.69 Aligned_cols=168 Identities=20% Similarity=0.282 Sum_probs=128.0
Q ss_pred HHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHH-cCCCeEEEEeCchHHHHHHHHHHh-cCC
Q 012133 12 KKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SII 89 (470)
Q Consensus 12 ~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~~lVF~~t~~~~~~l~~~l~-~~~ 89 (470)
.-..++....|..++-. ++-.+.....+ .+....|+.+|.+||..+ ..+.+||||..-....+-|..+.. ++|
T Consensus 438 ~mQLRKccnHPYLF~g~---ePg~pyttdeh--Lv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y 512 (971)
T KOG0385|consen 438 MMQLRKCCNHPYLFDGA---EPGPPYTTDEH--LVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGY 512 (971)
T ss_pred HHHHHHhcCCccccCCC---CCCCCCCcchH--HHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCc
Confidence 33556677788877643 22112222112 234567899999998654 567799999999999998888877 588
Q ss_pred cEEEEeCCCCHHHHHHHHcccccC---CeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCC--eE
Q 012133 90 ASEALHGDISQHQRERTLNGFRQG---KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG--TA 164 (470)
Q Consensus 90 ~~~~lhg~~~~~~R~~~~~~f~~g---~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g--~~ 164 (470)
...-|.|.++.++|...++.|... ..-.|++|.+...|||+...+.||.||-.|+|..-+|..-|++|.|+.- .+
T Consensus 513 ~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V 592 (971)
T KOG0385|consen 513 EYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVV 592 (971)
T ss_pred eeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEE
Confidence 999999999999999999999864 3557899999999999999999999999999999999999999999654 45
Q ss_pred EEeeChh--hHHHHHHHHHHhC
Q 012133 165 ILMFTSS--QRRTVRSLERDVG 184 (470)
Q Consensus 165 i~l~~~~--~~~~~~~i~~~~~ 184 (470)
|.|++.. |...+++-+..+.
T Consensus 593 ~RLitentVEe~IveRA~~KL~ 614 (971)
T KOG0385|consen 593 YRLITENTVEEKIVERAAAKLR 614 (971)
T ss_pred EEEeccchHHHHHHHHHHHHhc
Confidence 5566654 3444555444443
No 121
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.77 E-value=1.5e-07 Score=102.42 Aligned_cols=165 Identities=19% Similarity=0.176 Sum_probs=112.1
Q ss_pred EeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHH-HHHHHHHHHcCCCeEEEEeCchHHHHHH
Q 012133 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRDADEV 81 (470)
Q Consensus 3 fSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~l~~ll~~~~~~~~~lVF~~t~~~~~~l 81 (470)
||.|.-.+..++.+-|--+. |.+... .+.......-. +......|.. ++..++..+..+.++||-|.+.+..+.|
T Consensus 509 mTGTa~~e~~Ef~~iY~l~v--~~iPt~-kp~~r~d~~d~-iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~l 584 (970)
T PRK12899 509 MTGTAITESREFKEIYNLYV--LQVPTF-KPCLRIDHNDE-FYMTEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKL 584 (970)
T ss_pred cCCCCHHHHHHHHHHhCCCE--EECCCC-CCceeeeCCCc-EecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHH
Confidence 67787666566655554332 322211 11111111111 2233345554 4455666777788999999999999999
Q ss_pred HHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCC---cc-----EEEEecCCCChhHHHHHh
Q 012133 82 SLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN---VD-----LIIHYELPNDPETFVHRS 152 (470)
Q Consensus 82 ~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~---v~-----~VI~~~~p~~~~~y~qr~ 152 (470)
+..|.+ +++..+|+..-...+-+.+-+.=+ .-.|.|||++|.||.||.- |. +||....|.+...-.|-.
T Consensus 585 s~~L~~~gi~h~vLNak~~~~Ea~iia~AG~--~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~ 662 (970)
T PRK12899 585 SRILRQNRIEHTVLNAKNHAQEAEIIAGAGK--LGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLR 662 (970)
T ss_pred HHHHHHcCCcceecccchhhhHHHHHHhcCC--CCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHh
Confidence 999984 788888888733333333322222 3579999999999999942 22 789999999999999999
Q ss_pred cccCCCCCCCeEEEeeChhhH
Q 012133 153 GRTGRAGKEGTAILMFTSSQR 173 (470)
Q Consensus 153 GR~gR~g~~g~~i~l~~~~~~ 173 (470)
||+||.|.+|.+.+|++-.+.
T Consensus 663 GRagRQGdpGss~f~lSlEDd 683 (970)
T PRK12899 663 GRCARLGDPGAAKFFLSFEDR 683 (970)
T ss_pred cccccCCCCCceeEEEEcchH
Confidence 999999999999999887663
No 122
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.76 E-value=1.2e-07 Score=101.95 Aligned_cols=177 Identities=19% Similarity=0.296 Sum_probs=114.0
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccH-----HHHHHHHHHHHcCCCeEEEEeCch
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK-----RTILSDLITVYAKGGKTIVFTQTK 75 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k-----~~~l~~ll~~~~~~~~~lVF~~t~ 75 (470)
||-|||..-+-...+ -......+.+.........+.+....+....... ..+|..+-+.+..+.++|||+|.+
T Consensus 353 vLgSATPSLES~~~~--~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRR 430 (730)
T COG1198 353 VLGSATPSLESYANA--ESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRR 430 (730)
T ss_pred EEecCCCCHHHHHhh--hcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccC
Confidence 467999765543333 2222344555433332223333333222222122 344555555667788999999965
Q ss_pred H------------------------------------------------------------HHHHHHHHHhc---CCcEE
Q 012133 76 R------------------------------------------------------------DADEVSLALTS---IIASE 92 (470)
Q Consensus 76 ~------------------------------------------------------------~~~~l~~~l~~---~~~~~ 92 (470)
- -++++.+.|.+ ..++.
T Consensus 431 Gys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~ 510 (730)
T COG1198 431 GYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARII 510 (730)
T ss_pred CccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEE
Confidence 5 34555555554 34677
Q ss_pred EEeCCCCHH--HHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecC------C---C---ChhHHHHHhcccCCC
Q 012133 93 ALHGDISQH--QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL------P---N---DPETFVHRSGRTGRA 158 (470)
Q Consensus 93 ~lhg~~~~~--~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~------p---~---~~~~y~qr~GR~gR~ 158 (470)
.+.++.... .-+..++.|.+|+.+|||.|++++.|.|+|+|++|...|. | . ....+.|-+||+||.
T Consensus 511 r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~ 590 (730)
T COG1198 511 RIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRA 590 (730)
T ss_pred EEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccC
Confidence 788876543 3567899999999999999999999999999999764332 2 1 234558999999999
Q ss_pred CCCCeEEEeeChhhHHHHHHH
Q 012133 159 GKEGTAILMFTSSQRRTVRSL 179 (470)
Q Consensus 159 g~~g~~i~l~~~~~~~~~~~i 179 (470)
+++|.+++-....+...++.+
T Consensus 591 ~~~G~VvIQT~~P~hp~i~~~ 611 (730)
T COG1198 591 GKPGEVVIQTYNPDHPAIQAL 611 (730)
T ss_pred CCCCeEEEEeCCCCcHHHHHH
Confidence 999999887766554444444
No 123
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.75 E-value=5.3e-08 Score=106.44 Aligned_cols=131 Identities=18% Similarity=0.367 Sum_probs=110.6
Q ss_pred ccHHHHHHHHHHHHcC-CCeEEEEeCchHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHccccc---CCeeEEEeccc
Q 012133 49 TSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQ---GKFTVLVATDV 123 (470)
Q Consensus 49 ~~k~~~l~~ll~~~~~-~~~~lVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~f~~---g~~~iLVaTdv 123 (470)
.-|+-+|..||..+.. +.+||||..-....+-|+++|. ++|+..-|.|.+.-+.|+.+|+.|.. ..+..|+||.+
T Consensus 682 SGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRA 761 (1373)
T KOG0384|consen 682 SGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRA 761 (1373)
T ss_pred cCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEeccc
Confidence 3455566677755543 4799999999999999999998 58999999999999999999999985 46889999999
Q ss_pred ccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCC--eEEEeeChh--hHHHHHHH
Q 012133 124 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG--TAILMFTSS--QRRTVRSL 179 (470)
Q Consensus 124 ~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g--~~i~l~~~~--~~~~~~~i 179 (470)
..-|||+...+.||.||--|+|..=+|...|++|.|++- .+|.|++.. |..++++-
T Consensus 762 GGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERA 821 (1373)
T KOG0384|consen 762 GGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERA 821 (1373)
T ss_pred CcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHH
Confidence 999999999999999999999999999999999999664 466677764 34444443
No 124
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.74 E-value=9e-08 Score=103.30 Aligned_cols=126 Identities=25% Similarity=0.407 Sum_probs=88.3
Q ss_pred CEEeecCCHH--HHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCc---h
Q 012133 1 MLFSATMPSW--VKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQT---K 75 (470)
Q Consensus 1 llfSATlp~~--i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t---~ 75 (470)
|+.|||..+. -..+.+..|. +++- .......+|...|+.. .-.+.+..+++.+. .-.|||++. +
T Consensus 280 vvsSATg~~rg~R~~LfReLlg----FevG--~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG--~GgLIfV~~d~G~ 348 (1187)
T COG1110 280 VVSSATGKPRGSRLKLFRELLG----FEVG--SGGEGLRNIVDIYVES---ESLEKVVELVKKLG--DGGLIFVPIDYGR 348 (1187)
T ss_pred EEeeccCCCCCchHHHHHHHhC----CccC--ccchhhhheeeeeccC---ccHHHHHHHHHHhC--CCeEEEEEcHHhH
Confidence 4579997543 1234444443 1111 1223345676677665 33444556666664 367999999 9
Q ss_pred HHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEec----ccccccCCCCC-ccEEEEecCC
Q 012133 76 RDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT----DVAARGLDIPN-VDLIIHYELP 142 (470)
Q Consensus 76 ~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaT----dv~~~Gidip~-v~~VI~~~~p 142 (470)
+.+++|++.|.. ++.+..+|+. .++.++.|..|++++||.. .++.||||+|. +.++|.|+.|
T Consensus 349 e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 349 EKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred HHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 999999999995 7999999984 3788999999999999876 48999999995 5678866644
No 125
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.69 E-value=2.3e-07 Score=100.79 Aligned_cols=164 Identities=21% Similarity=0.210 Sum_probs=112.5
Q ss_pred EeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHH-HHHHHHHcCCCeEEEEeCchHHHHHH
Q 012133 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL-SDLITVYAKGGKTIVFTQTKRDADEV 81 (470)
Q Consensus 3 fSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l-~~ll~~~~~~~~~lVF~~t~~~~~~l 81 (470)
||.|...+...+.+-|--+.+.|.. ..+.......-. +......|..++ ..+...+..+.+|||-|.|.+..+.|
T Consensus 390 MTGTa~te~~Ef~~iY~l~Vv~IPT---nkP~~R~D~~d~-vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~l 465 (913)
T PRK13103 390 MTGTADTEAFEFRQIYGLDVVVIPP---NKPLARKDFNDL-VYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHM 465 (913)
T ss_pred CCCCCHHHHHHHHHHhCCCEEECCC---CCCcccccCCCe-EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHH
Confidence 6788877766676666444333321 111111111111 223334555444 44556667788999999999999999
Q ss_pred HHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCC-----------------------------
Q 012133 82 SLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP----------------------------- 131 (470)
Q Consensus 82 ~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip----------------------------- 131 (470)
+..|.+ +++..+|+......+-+.+-+.=+ .-.|.|||++|.||.||.
T Consensus 466 s~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~--~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (913)
T PRK13103 466 SNLLKKEGIEHKVLNAKYHEKEAEIIAQAGR--PGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQK 543 (913)
T ss_pred HHHHHHcCCcHHHhccccchhHHHHHHcCCC--CCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 999985 777777777644333333332222 457999999999999994
Q ss_pred ---Ccc-----EEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhh
Q 012133 132 ---NVD-----LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 172 (470)
Q Consensus 132 ---~v~-----~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~ 172 (470)
.|. +||-...|.|..-=.|-.||+||.|.+|.+-+|++-.+
T Consensus 544 ~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 544 RHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 122 68888899999999999999999999999999988755
No 126
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.67 E-value=4.6e-07 Score=99.07 Aligned_cols=164 Identities=21% Similarity=0.216 Sum_probs=113.9
Q ss_pred EeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHH-HHHHHHHHHcCCCeEEEEeCchHHHHHH
Q 012133 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRDADEV 81 (470)
Q Consensus 3 fSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~l~~ll~~~~~~~~~lVF~~t~~~~~~l 81 (470)
||.|...+-.++.+-|--+.+.|.. . .+....... -.+......|.. ++..+...+..+.++||-|.|.+..+.|
T Consensus 569 MTGTA~tea~Ef~~IY~L~Vv~IPT--n-rP~~R~D~~-D~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~l 644 (1112)
T PRK12901 569 MTGTAETEAGEFWDIYKLDVVVIPT--N-RPIARKDKE-DLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELL 644 (1112)
T ss_pred cCCCCHHHHHHHHHHhCCCEEECCC--C-CCcceecCC-CeEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHH
Confidence 6778877766676666444333321 1 111111111 122223345544 4555666777888999999999999999
Q ss_pred HHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCC---Cc-----cEEEEecCCCChhHHHHHh
Q 012133 82 SLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NV-----DLIIHYELPNDPETFVHRS 152 (470)
Q Consensus 82 ~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip---~v-----~~VI~~~~p~~~~~y~qr~ 152 (470)
+..|.. +++..+|++.....+-+.+-+.=+ .-.|-|||++|.||.||. .| =+||-...+.|...--|-.
T Consensus 645 S~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~--~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLr 722 (1112)
T PRK12901 645 SRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQ--PGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLR 722 (1112)
T ss_pred HHHHHHcCCcHHHhhccchhhHHHHHHhcCC--CCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHh
Confidence 999984 788777877754444433333322 357899999999999995 22 2788899999999999999
Q ss_pred cccCCCCCCCeEEEeeChhh
Q 012133 153 GRTGRAGKEGTAILMFTSSQ 172 (470)
Q Consensus 153 GR~gR~g~~g~~i~l~~~~~ 172 (470)
||+||.|.+|.+.+|++-.+
T Consensus 723 GRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 723 GRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred cccccCCCCCcceEEEEccc
Confidence 99999999999999888665
No 127
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=98.66 E-value=1e-08 Score=55.60 Aligned_cols=17 Identities=59% Similarity=1.499 Sum_probs=15.9
Q ss_pred ccccCCCCCccCCCCCC
Q 012133 454 ACFNCGKSGHRASECPN 470 (470)
Q Consensus 454 ~c~~c~~~gh~~~~c~~ 470 (470)
.||+|++.||+++|||+
T Consensus 2 ~C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 2 KCFNCGEPGHIARDCPK 18 (18)
T ss_dssp BCTTTSCSSSCGCTSSS
T ss_pred cCcCCCCcCcccccCcc
Confidence 39999999999999996
No 128
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.64 E-value=4e-07 Score=102.09 Aligned_cols=106 Identities=21% Similarity=0.261 Sum_probs=76.4
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhcC---CcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccE--EEE
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL--IIH 138 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~~---~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~--VI~ 138 (470)
..+++|||+++.+..+.++..|... .....+..+.. ..|.+++++|++++..||++|+.+.+|||+|+..+ ||.
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI 751 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVI 751 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEE
Confidence 4579999999999999999998741 12223333333 57899999999999999999999999999998774 555
Q ss_pred ecCCCC------------------------------hhHHHHHhcccCCCCCCCeEEEeeCh
Q 012133 139 YELPND------------------------------PETFVHRSGRTGRAGKEGTAILMFTS 170 (470)
Q Consensus 139 ~~~p~~------------------------------~~~y~qr~GR~gR~g~~g~~i~l~~~ 170 (470)
..+|.. ...+.|.+||.=|....--++++++.
T Consensus 752 ~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~ 813 (850)
T TIGR01407 752 PRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDR 813 (850)
T ss_pred eCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEcc
Confidence 665531 12236888999887543334444444
No 129
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.61 E-value=3.5e-07 Score=100.85 Aligned_cols=104 Identities=25% Similarity=0.439 Sum_probs=86.0
Q ss_pred CeEEEEeCchHHHHHHHHHHhcC-----------------------------C-------------cEEEEeCCCCHHHH
Q 012133 66 GKTIVFTQTKRDADEVSLALTSI-----------------------------I-------------ASEALHGDISQHQR 103 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~~-----------------------------~-------------~~~~lhg~~~~~~R 103 (470)
-++|+|+-++..|+.++..+... + .+.++|++|-+..+
T Consensus 380 lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K 459 (1041)
T COG4581 380 LPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIK 459 (1041)
T ss_pred CceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHH
Confidence 48999999999999988776410 1 13468999999999
Q ss_pred HHHHcccccCCeeEEEecccccccCCCCCccEEE----Eec----CCCChhHHHHHhcccCCCC--CCCeEEEeeC
Q 012133 104 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII----HYE----LPNDPETFVHRSGRTGRAG--KEGTAILMFT 169 (470)
Q Consensus 104 ~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI----~~~----~p~~~~~y~qr~GR~gR~g--~~g~~i~l~~ 169 (470)
..+.+.|..|.++||+||.+.+.|||+|.-++|+ .+| -+-++..|+|+.||+||.| ..|.+|++-.
T Consensus 460 ~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 460 ELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred HHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 9999999999999999999999999999877766 122 2347899999999999988 5688888743
No 130
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.54 E-value=9.2e-07 Score=93.26 Aligned_cols=124 Identities=19% Similarity=0.324 Sum_probs=107.5
Q ss_pred CcccHHHHHHHHHH-HHcCCCeEEEEeCchHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHcccccCC-ee-EEEec
Q 012133 47 TATSKRTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFRQGK-FT-VLVAT 121 (470)
Q Consensus 47 ~~~~k~~~l~~ll~-~~~~~~~~lVF~~t~~~~~~l~~~l~--~~~~~~~lhg~~~~~~R~~~~~~f~~g~-~~-iLVaT 121 (470)
...-|+.+|..+|+ ++..+.++|+|..++...+-|...|. ++|...-+.|..+...|..++++|.++. +. .|++|
T Consensus 527 k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTT 606 (923)
T KOG0387|consen 527 KRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTT 606 (923)
T ss_pred hhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEe
Confidence 34578999999885 55667799999999999999999998 4899999999999999999999999764 33 57899
Q ss_pred ccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeE--EEeeCh
Q 012133 122 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTA--ILMFTS 170 (470)
Q Consensus 122 dv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~--i~l~~~ 170 (470)
.|..-|+|+...+-||.|||-|+|.+-.|..-|+-|.|++-.+ |.|++.
T Consensus 607 rvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~ 657 (923)
T KOG0387|consen 607 RVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTA 657 (923)
T ss_pred cccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecC
Confidence 9999999999999999999999999999999999999966544 445554
No 131
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.52 E-value=8.3e-07 Score=95.30 Aligned_cols=119 Identities=18% Similarity=0.261 Sum_probs=93.1
Q ss_pred ccHHHHHHHHHHHHcC--CCeEEEEeCchHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHcccccCC---eeEEEecc
Q 012133 49 TSKRTILSDLITVYAK--GGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK---FTVLVATD 122 (470)
Q Consensus 49 ~~k~~~l~~ll~~~~~--~~~~lVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~f~~g~---~~iLVaTd 122 (470)
..|+..|..++....+ ..++.+..|.+...+.+..... +++.+..|||.|+..+|+.+++.|.+.. .-.|.+|-
T Consensus 577 s~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsK 656 (776)
T KOG0390|consen 577 SGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSK 656 (776)
T ss_pred hhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecc
Confidence 4567777777643321 2344444555555555555444 4899999999999999999999998743 33567889
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEe
Q 012133 123 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 167 (470)
Q Consensus 123 v~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l 167 (470)
+.+.||++-..+.||.+|++|+|..-.|.+.|+-|.|++-.|+++
T Consensus 657 Agg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 657 AGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred cccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 999999999999999999999999999999999999988777765
No 132
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.51 E-value=1.1e-06 Score=95.48 Aligned_cols=123 Identities=20% Similarity=0.335 Sum_probs=100.8
Q ss_pred cccHHHHHHHHHHHH-cCCCeEEEEeCchHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHcccccCC--eeEEEeccc
Q 012133 48 ATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK--FTVLVATDV 123 (470)
Q Consensus 48 ~~~k~~~l~~ll~~~-~~~~~~lVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~f~~g~--~~iLVaTdv 123 (470)
+..|++.|.-||..+ ..+.++|||+.-.+..+-|...|. .++.-.-|.|...-++|+..+++|.... +..|++|..
T Consensus 1258 DcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrS 1337 (1958)
T KOG0391|consen 1258 DCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRS 1337 (1958)
T ss_pred ccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccC
Confidence 347888888888655 456799999999999999999998 4677888999999999999999998754 567899999
Q ss_pred ccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCC--CCeEEEeeCh
Q 012133 124 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK--EGTAILMFTS 170 (470)
Q Consensus 124 ~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~--~g~~i~l~~~ 170 (470)
...|||+-..+.||.||-.|++..-.|.--|+.|.|+ .-..|.|++.
T Consensus 1338 ggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe 1386 (1958)
T KOG0391|consen 1338 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISE 1386 (1958)
T ss_pred CccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeecc
Confidence 9999999999999999999988776665555555553 3455566655
No 133
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.48 E-value=4.4e-06 Score=90.67 Aligned_cols=123 Identities=20% Similarity=0.211 Sum_probs=76.6
Q ss_pred EeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHH-HHHHHHHHHcCCCeEEEEeCchHHHHHH
Q 012133 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRDADEV 81 (470)
Q Consensus 3 fSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~l~~ll~~~~~~~~~lVF~~t~~~~~~l 81 (470)
||.|.-.+-..+.+-|--+.+.| ... .+....... -.+......|.. ++..++..+..+.++||-|.|.+..+.|
T Consensus 365 MTGTa~te~~Ef~~iY~l~vv~I--Ptn-kp~~R~d~~-d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~l 440 (870)
T CHL00122 365 MTGTAKTEELEFEKIYNLEVVCI--PTH-RPMLRKDLP-DLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELL 440 (870)
T ss_pred cCCCCHHHHHHHHHHhCCCEEEC--CCC-CCccceeCC-CeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHH
Confidence 67888766666666564433322 211 111111111 122233334544 4555666777888999999999999999
Q ss_pred HHHHhc-CCcEEEEeCCCCHHHHH-HHHcccccCCeeEEEecccccccCCC
Q 012133 82 SLALTS-IIASEALHGDISQHQRE-RTLNGFRQGKFTVLVATDVAARGLDI 130 (470)
Q Consensus 82 ~~~l~~-~~~~~~lhg~~~~~~R~-~~~~~f~~g~~~iLVaTdv~~~Gidi 130 (470)
+..|.+ +++..+|++.-.+.+++ +++.. .-..-.|.|||++|.||.||
T Consensus 441 s~~L~~~gi~h~vLNAk~~~~~~EA~IIA~-AG~~G~VTIATNMAGRGTDI 490 (870)
T CHL00122 441 SQLLKEYRLPHQLLNAKPENVRRESEIVAQ-AGRKGSITIATNMAGRGTDI 490 (870)
T ss_pred HHHHHHcCCccceeeCCCccchhHHHHHHh-cCCCCcEEEeccccCCCcCe
Confidence 999985 88899999873222222 23322 22245799999999999998
No 134
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.39 E-value=2.1e-06 Score=94.08 Aligned_cols=122 Identities=21% Similarity=0.344 Sum_probs=101.2
Q ss_pred ccHHHHHHHHHHHHc---------------CCCeEEEEeCchHHHHHHHHHHhc-CC---cEEEEeCCCCHHHHHHHHcc
Q 012133 49 TSKRTILSDLITVYA---------------KGGKTIVFTQTKRDADEVSLALTS-II---ASEALHGDISQHQRERTLNG 109 (470)
Q Consensus 49 ~~k~~~l~~ll~~~~---------------~~~~~lVF~~t~~~~~~l~~~l~~-~~---~~~~lhg~~~~~~R~~~~~~ 109 (470)
..|+.+|.+||..-. .+.++||||.-+..++-+.+.|.+ .+ .-..|.|.+++.+|.++.++
T Consensus 1309 spKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~ 1388 (1549)
T KOG0392|consen 1309 SPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVER 1388 (1549)
T ss_pred chhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHH
Confidence 467888998885431 235899999999999999888764 32 23478999999999999999
Q ss_pred cccC-CeeEE-EecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeE--EEeeCh
Q 012133 110 FRQG-KFTVL-VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTA--ILMFTS 170 (470)
Q Consensus 110 f~~g-~~~iL-VaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~--i~l~~~ 170 (470)
|.++ .++|| ++|.|..-|+|+...+.||.++-.|++..-+|.+-|++|.|++-++ |.|++.
T Consensus 1389 FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItr 1453 (1549)
T KOG0392|consen 1389 FNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITR 1453 (1549)
T ss_pred hcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhc
Confidence 9998 68876 6778999999999999999999999999999999999999977554 444443
No 135
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=98.36 E-value=4.8e-07 Score=69.52 Aligned_cols=61 Identities=21% Similarity=0.401 Sum_probs=48.3
Q ss_pred EEEEEeeCCccccCCcchhhHHhHhhhhcCcCcCccccEEEeecCccceeEeecCHHHHHHHHhhcCC
Q 012133 264 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 331 (470)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~Ig~I~i~~~~~~~ga~fdv~~~~a~~i~~~~~~ 331 (470)
|+++++.++ +++++|++|+++|++..++...+||+|++.+++ +||+||++.++++++....
T Consensus 1 vrl~in~Gr---~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~----S~vev~~~~a~~v~~~l~~ 61 (74)
T PF03880_consen 1 VRLFINVGR---KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDNF----SFVEVPEEVAEKVLEALNG 61 (74)
T ss_dssp -EEEES-SG---GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-TT-HHHHHHHHTT
T ss_pred CEEEEEccc---ccCCCHHHHHHHHHhccCCCHHhEEEEEEeeeE----EEEEECHHHHHHHHHHhcC
Confidence 578999998 899999999999999999999999999999997 7999999999999987653
No 136
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.36 E-value=2.9e-05 Score=79.20 Aligned_cols=178 Identities=16% Similarity=0.206 Sum_probs=131.9
Q ss_pred CEEeecCCHHHHHHHHHHcCCCc-EEEeecccc-----cccccceEEEEEEcCccc-------HHH-----HHHHHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQD-----EKLAEGIKLYAISTTATS-------KRT-----ILSDLITVY 62 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~-~i~~~~~~~-----~~~~~~i~~~~~~~~~~~-------k~~-----~l~~ll~~~ 62 (470)
|+||+.+.+++..+.+.++.|.. .|.+..... ..+...++|.+...+..+ +.+ +|..+.+ -
T Consensus 219 ii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~-~ 297 (442)
T PF06862_consen 219 IIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKR-D 297 (442)
T ss_pred EEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhh-c
Confidence 68999999999999999877653 344433222 234556777777644332 222 2222322 2
Q ss_pred cCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc--cccccCCCCCccEEEEe
Q 012133 63 AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPNVDLIIHY 139 (470)
Q Consensus 63 ~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd--v~~~Gidip~v~~VI~~ 139 (470)
.....+|||+++--+-..|..+|.+ .+....+|--.++.+-.++-..|.+|+.+||+.|. ..=+=..|..|.+||.|
T Consensus 298 ~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY 377 (442)
T PF06862_consen 298 SKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFY 377 (442)
T ss_pred cCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEE
Confidence 2457999999999998999999985 78889999999999999999999999999999997 33455667889999999
Q ss_pred cCCCChhHHHHHhcccCCCC------CCCeEEEeeChhhHHHHHHH
Q 012133 140 ELPNDPETFVHRSGRTGRAG------KEGTAILMFTSSQRRTVRSL 179 (470)
Q Consensus 140 ~~p~~~~~y~qr~GR~gR~g------~~g~~i~l~~~~~~~~~~~i 179 (470)
.+|..+.-|...+.-..... ....|.++|+.-+.-.+++|
T Consensus 378 ~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 378 GPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred CCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 99999999977775544432 25789999999776665554
No 137
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.32 E-value=1.7e-05 Score=86.18 Aligned_cols=124 Identities=19% Similarity=0.184 Sum_probs=76.7
Q ss_pred EeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHH-HHHHHHHcCCCeEEEEeCchHHHHHH
Q 012133 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL-SDLITVYAKGGKTIVFTQTKRDADEV 81 (470)
Q Consensus 3 fSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l-~~ll~~~~~~~~~lVF~~t~~~~~~l 81 (470)
||.|.-.+..++.+-|-.+.+.|.. . .+.......- .+......|..++ ..+...+..+.++||-|.|.+..+.|
T Consensus 380 MTGTa~te~~Ef~~iY~l~Vv~IPT--n-kP~~R~d~~d-~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~l 455 (939)
T PRK12902 380 MTGTAKTEEVEFEKTYKLEVTVIPT--N-RPRRRQDWPD-QVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELL 455 (939)
T ss_pred cCCCCHHHHHHHHHHhCCcEEEcCC--C-CCeeeecCCC-eEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHH
Confidence 6778766666666666444333321 1 1111111111 1222334555444 45556677888999999999999999
Q ss_pred HHHHhc-CCcEEEEeCCCCHHHHH-HHHcccccCCeeEEEecccccccCCCC
Q 012133 82 SLALTS-IIASEALHGDISQHQRE-RTLNGFRQGKFTVLVATDVAARGLDIP 131 (470)
Q Consensus 82 ~~~l~~-~~~~~~lhg~~~~~~R~-~~~~~f~~g~~~iLVaTdv~~~Gidip 131 (470)
+..|.+ +++..+|+..--+.+++ +++.. .-..-.|-|||++|.||.||.
T Consensus 456 s~~L~~~gi~h~vLNAk~~~~~~EA~IIa~-AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 456 SALLQEQGIPHNLLNAKPENVEREAEIVAQ-AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred HHHHHHcCCchheeeCCCcchHhHHHHHHh-cCCCCcEEEeccCCCCCcCEe
Confidence 999985 78888899863222233 23322 222357899999999999983
No 138
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.19 E-value=1.8e-05 Score=83.66 Aligned_cols=124 Identities=21% Similarity=0.333 Sum_probs=104.9
Q ss_pred ccHHHHHHHHHHHHc-CCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCC--eeEEEecccc
Q 012133 49 TSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK--FTVLVATDVA 124 (470)
Q Consensus 49 ~~k~~~l~~ll~~~~-~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~--~~iLVaTdv~ 124 (470)
+.|...|..||..+. ++.+||||..-....+-|...|.. .+...-|.|...-.+|+.+++.|...+ .-.|++|.+.
T Consensus 760 SgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAG 839 (941)
T KOG0389|consen 760 SGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAG 839 (941)
T ss_pred hhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccC
Confidence 467888888886654 457999999999999988888874 788899999999999999999998654 4568999999
Q ss_pred cccCCCCCccEEEEecCCCChhHHHHHhcccCCCCC--CCeEEEeeChhh
Q 012133 125 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK--EGTAILMFTSSQ 172 (470)
Q Consensus 125 ~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~--~g~~i~l~~~~~ 172 (470)
.-|||+...++||.+|+-.+|-.-.|.--|++|.|+ +-+++.|++...
T Consensus 840 G~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 840 GFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred cceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 999999999999999999988888888888888884 456677777643
No 139
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.19 E-value=1.6e-05 Score=80.10 Aligned_cols=107 Identities=24% Similarity=0.349 Sum_probs=88.8
Q ss_pred ccHHHHHHHHHHHHc-CCCeEEEEeCchHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHccccc-CCeeEEEecccccc
Q 012133 49 TSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQ-GKFTVLVATDVAAR 126 (470)
Q Consensus 49 ~~k~~~l~~ll~~~~-~~~~~lVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~f~~-g~~~iLVaTdv~~~ 126 (470)
..|..+..-||+.++ .+.++|||..+.-...+.+-.|.+ -.|+|..+|.+|.++++.|+. ..++.+.-+.|...
T Consensus 526 P~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDt 601 (776)
T KOG1123|consen 526 PNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDT 601 (776)
T ss_pred cchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC----ceEECCCchhHHHHHHHhcccCCccceEEEeeccCc
Confidence 467777777887664 467999999998877777766654 458999999999999999995 46888899999999
Q ss_pred cCCCCCccEEEEecCCC-ChhHHHHHhcccCCCC
Q 012133 127 GLDIPNVDLIIHYELPN-DPETFVHRSGRTGRAG 159 (470)
Q Consensus 127 Gidip~v~~VI~~~~p~-~~~~y~qr~GR~gR~g 159 (470)
.||+|..+++|+...-. +...-.||.||.-|+.
T Consensus 602 SiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 602 SIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred cccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 99999999999876554 6777889999999975
No 140
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=98.10 E-value=1.7e-05 Score=82.87 Aligned_cols=122 Identities=20% Similarity=0.335 Sum_probs=105.0
Q ss_pred ccHHHHHHHHHHHH-cCCCeEEEEeCchHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHcccccCC-eeEEEeccccc
Q 012133 49 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK-FTVLVATDVAA 125 (470)
Q Consensus 49 ~~k~~~l~~ll~~~-~~~~~~lVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~f~~g~-~~iLVaTdv~~ 125 (470)
+.|+..|..||..+ ..+.++|+|..-.+..+.+.++|. +.+...-|.|.....+|..++.+|+... +-.|++|.+..
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 46777888888655 456799999999999999999998 5899999999999999999999999755 45679999999
Q ss_pred ccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCC--eEEEeeCh
Q 012133 126 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG--TAILMFTS 170 (470)
Q Consensus 126 ~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g--~~i~l~~~ 170 (470)
-||++...+.||.||..|++..-.|..-|+.|-|++- ++|.|++.
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~r 1153 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITR 1153 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccc
Confidence 9999999999999999999999999999999998654 45555543
No 141
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.09 E-value=4.3e-05 Score=79.01 Aligned_cols=219 Identities=16% Similarity=0.236 Sum_probs=129.8
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-----ccccc-CCCCCc
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNV 133 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-----v~~~G-idip~v 133 (470)
...+||.+||++.|.++++.+.. .+.+.+++|+.+...+..-+++ .+.|+|||+ .++.| +|+..|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~----gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLER----GVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhc----CCcEEEeCChHHHHHHHcCCccccce
Confidence 45799999999999999888763 2559999999999988877776 689999997 45555 888999
Q ss_pred cEEEE--------ecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCccccCCCCHHHH-HHHHHH
Q 012133 134 DLIIH--------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV-LESSAE 204 (470)
Q Consensus 134 ~~VI~--------~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~-~~~~~~ 204 (470)
.++|. .++-.++..+++.+.+.-| -.++++..-...++.|...+-.....+.+-...+. ....+.
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r------Qtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~ 314 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR------QTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIR 314 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc------cEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchh
Confidence 99883 4455678888888888766 34455544445555555544333333322222111 111112
Q ss_pred HHHHHHcccCccchhhhHHHHHHHHHh------------hCHHHHHHHHHHHcCCCC---------CCCCcccccCCCCe
Q 012133 205 QVVATLNGVHPESVEFFTPTAQRLIEE------------KGTDALAAALAQLSGFSR---------PPSSRSLINHEQGW 263 (470)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~~~a~~l~~~------------~~~~~l~~al~~l~~~~~---------~~~~r~l~~~~~~~ 263 (470)
++++.+... +......+.+++.... ...+.|+..+... ++.. ..+...|...+++-
T Consensus 315 qive~~~~~--~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~-~~~a~~iHGd~sQ~eR~~~L~~FreG~ 391 (519)
T KOG0331|consen 315 QIVEVCDET--AKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK-GWPAVAIHGDKSQSERDWVLKGFREGK 391 (519)
T ss_pred hhhhhcCHH--HHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc-CcceeeecccccHHHHHHHHHhcccCC
Confidence 222211100 0011111111111100 0122333333331 1111 11222344567788
Q ss_pred EEEEEeeCCccccCCcchhhHHhHhhhhcCcCcCc
Q 012133 264 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE 298 (470)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 298 (470)
..+.|.++. +.++++..+|-..|+...|...++
T Consensus 392 ~~vLVATdV--AaRGLDi~dV~lVInydfP~~vEd 424 (519)
T KOG0331|consen 392 SPVLVATDV--AARGLDVPDVDLVINYDFPNNVED 424 (519)
T ss_pred cceEEEccc--ccccCCCccccEEEeCCCCCCHHH
Confidence 889999987 678899999988888888866654
No 142
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.06 E-value=6.7e-05 Score=84.92 Aligned_cols=80 Identities=21% Similarity=0.252 Sum_probs=61.5
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhcCCc---EEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCc--cEEEE
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTSIIA---SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV--DLIIH 138 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~~~~---~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v--~~VI~ 138 (470)
.++++|||+++.+..+.+++.|..... ...+.=+++...|.+++++|+.++-.||++|....+|||+|+- .+||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 467999999999999999999974321 2222223444567889999998888899999999999999964 67877
Q ss_pred ecCCC
Q 012133 139 YELPN 143 (470)
Q Consensus 139 ~~~p~ 143 (470)
..+|.
T Consensus 831 ~kLPF 835 (928)
T PRK08074 831 VRLPF 835 (928)
T ss_pred ecCCC
Confidence 66553
No 143
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.06 E-value=3.6e-05 Score=83.15 Aligned_cols=82 Identities=28% Similarity=0.459 Sum_probs=71.6
Q ss_pred EEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEec-CCCChhHHHHHhcccCCCC--CCCeEEEe
Q 012133 91 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE-LPNDPETFVHRSGRTGRAG--KEGTAILM 167 (470)
Q Consensus 91 ~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~-~p~~~~~y~qr~GR~gR~g--~~g~~i~l 167 (470)
+.++|++|....|..+.-.||.|...||+||..++-|||+|.-++|+--| +--++-.|.|++||+||.| ..|.++++
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~Fm 1044 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFM 1044 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEE
Confidence 56689999999999999999999999999999999999999887777655 3448899999999999988 56888888
Q ss_pred eChhh
Q 012133 168 FTSSQ 172 (470)
Q Consensus 168 ~~~~~ 172 (470)
--|..
T Consensus 1045 giP~~ 1049 (1330)
T KOG0949|consen 1045 GIPRQ 1049 (1330)
T ss_pred eCcHH
Confidence 76644
No 144
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.06 E-value=3e-05 Score=87.57 Aligned_cols=119 Identities=19% Similarity=0.302 Sum_probs=102.6
Q ss_pred cHHHHHHHHH-H-HHcCCC--eEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccC--CeeEEEecc
Q 012133 50 SKRTILSDLI-T-VYAKGG--KTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG--KFTVLVATD 122 (470)
Q Consensus 50 ~k~~~l~~ll-~-~~~~~~--~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g--~~~iLVaTd 122 (470)
.|...+.+++ . ...... ++|||++.....+-+...+.. .+....++|.++.++|..+++.|.++ ..-+|++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 6788888888 3 334445 899999999999999999986 46899999999999999999999985 456678889
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEee
Q 012133 123 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 168 (470)
Q Consensus 123 v~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~ 168 (470)
+...|+++...++||++|+.|++....|...|+.|.|++..+.++-
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r 817 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYR 817 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEE
Confidence 9999999999999999999999999999999999998776655543
No 145
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.03 E-value=2.2e-05 Score=83.92 Aligned_cols=60 Identities=12% Similarity=0.080 Sum_probs=41.8
Q ss_pred CCeEEEEEeeCCccccCCcchhhHHhHhhhhcCcCcCccccEEEeecCccceeEeecCHHHHHHHHhhcC
Q 012133 261 QGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQI 330 (470)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~Ig~I~i~~~~~~~ga~fdv~~~~a~~i~~~~~ 330 (470)
++..|-.++++. +..++|-.|+-|-+++.......|.+++-|.+ ++|..+.|..|..+..
T Consensus 1044 EKIRTRAIS~K~---MslVsPLQLLLF~SrKVqsdgq~IV~VDdWIk-------lqIshEaAAcItgLr~ 1103 (1282)
T KOG0921|consen 1044 EKIRTRAISCKQ---MSLVSPLQLLLFGSRKVQSDGQGIVRVDDWIK-------LQISHEAAACITGLRP 1103 (1282)
T ss_pred hhhhhheecccC---ccccChHHHhhhhhhhccccCcceEEeeceee-------EeccHHHHHHHhhhHH
Confidence 334455566655 55678888888888777666656777776654 8999999988765543
No 146
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.01 E-value=0.00012 Score=76.67 Aligned_cols=68 Identities=22% Similarity=0.359 Sum_probs=52.4
Q ss_pred eEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc------cccccCCCCCccE
Q 012133 67 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVDL 135 (470)
Q Consensus 67 ~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd------v~~~Gidip~v~~ 135 (470)
++||.+||++.|.++++.+.. .+.+..++|+++...+...+. +..+|||+|+ .....+++..+.+
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLR----GGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHc----CCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 799999999999999888763 356788999998776554432 3679999996 2345568888998
Q ss_pred EEE
Q 012133 136 IIH 138 (470)
Q Consensus 136 VI~ 138 (470)
||.
T Consensus 153 lVi 155 (456)
T PRK10590 153 LVL 155 (456)
T ss_pred EEe
Confidence 874
No 147
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.99 E-value=3e-05 Score=82.89 Aligned_cols=92 Identities=25% Similarity=0.366 Sum_probs=76.7
Q ss_pred CCeEEEEeCchHHHHHHHHHHhcCC------cEEEEeCCCCHHHHHHHHccccc--CCeeEEEecccccccCCCCCccEE
Q 012133 65 GGKTIVFTQTKRDADEVSLALTSII------ASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDVAARGLDIPNVDLI 136 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~~~------~~~~lhg~~~~~~R~~~~~~f~~--g~~~iLVaTdv~~~Gidip~v~~V 136 (470)
-+|+||||.+..+|+.+...|.+.+ -+..|.++-.+.++ .++.|.. .-.+|.|+.|++..|||+|.|..+
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q~--~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQA--LIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhHH--HHHHHHhcCCCCceEEehhhhhcCCCchheeee
Confidence 3699999999999999999997532 37788888655543 3555543 346789999999999999999999
Q ss_pred EEecCCCChhHHHHHhcccCCC
Q 012133 137 IHYELPNDPETFVHRSGRTGRA 158 (470)
Q Consensus 137 I~~~~p~~~~~y~qr~GR~gR~ 158 (470)
|.+..-.|...|.||+||.-|.
T Consensus 504 VF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 504 VFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred eehhhhhhHHHHHHHhcCcccc
Confidence 9999999999999999999884
No 148
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.97 E-value=9.1e-05 Score=80.90 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=73.9
Q ss_pred CCeEEEEeCchHHHHHHHHHHhcC------CcEEEEeCCCCHH---------------------HHHHHHccccc-CCee
Q 012133 65 GGKTIVFTQTKRDADEVSLALTSI------IASEALHGDISQH---------------------QRERTLNGFRQ-GKFT 116 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~~------~~~~~lhg~~~~~---------------------~R~~~~~~f~~-g~~~ 116 (470)
..+++|||.++..|..+++.|.+. ..+.++++..+.. ....++++|++ +.++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 479999999999999999888642 3455666553322 22468889976 5789
Q ss_pred EEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCC
Q 012133 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 158 (470)
Q Consensus 117 iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~ 158 (470)
|||++|++..|+|.|.++.++...+-.+. .++|.+||+.|.
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRI 634 (667)
T ss_pred EEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccc
Confidence 99999999999999999999987766654 589999999994
No 149
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.94 E-value=0.00013 Score=79.13 Aligned_cols=123 Identities=20% Similarity=0.306 Sum_probs=106.2
Q ss_pred cccHHHHHHHHHHHH-cCCCeEEEEeCchHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHcccccCC---eeEEEecc
Q 012133 48 ATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK---FTVLVATD 122 (470)
Q Consensus 48 ~~~k~~~l~~ll~~~-~~~~~~lVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~f~~g~---~~iLVaTd 122 (470)
..-|+++|.++|-.+ ..+.++|.||.-....+-+..+|. +.+.-.-+.|.....+|-..++.|..-. +..|++|.
T Consensus 708 ~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstr 787 (1157)
T KOG0386|consen 708 VSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTR 787 (1157)
T ss_pred hccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeec
Confidence 357899999998655 457899999999998888888888 5788889999999999999999998643 56789999
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeCh
Q 012133 123 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 170 (470)
Q Consensus 123 v~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~ 170 (470)
....|+|+...+.||.||.-|++....|+--|+.|.|+.-.+-++...
T Consensus 788 agglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~ 835 (1157)
T KOG0386|consen 788 AGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLI 835 (1157)
T ss_pred ccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeee
Confidence 999999999999999999999999999999999999976665555443
No 150
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.92 E-value=0.0002 Score=78.54 Aligned_cols=94 Identities=20% Similarity=0.234 Sum_probs=70.2
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhcCCc--EEEEeCCCCHHHHHHHHcccccCCe-eEEEecccccccCCCCCc--cEEEE
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTSIIA--SEALHGDISQHQRERTLNGFRQGKF-TVLVATDVAARGLDIPNV--DLIIH 138 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~~~~--~~~lhg~~~~~~R~~~~~~f~~g~~-~iLVaTdv~~~Gidip~v--~~VI~ 138 (470)
.++++|||+++.+..+.+++.+..... ....++..+. .+.+++|+...- -++|+|..+.+|||+|+- ..||.
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~---~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI 554 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDER---EELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVI 554 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcH---HHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEE
Confidence 356999999999999999999985332 4455555444 477888876544 899999999999999865 56776
Q ss_pred ecCCC------------------------------ChhHHHHHhcccCCCCC
Q 012133 139 YELPN------------------------------DPETFVHRSGRTGRAGK 160 (470)
Q Consensus 139 ~~~p~------------------------------~~~~y~qr~GR~gR~g~ 160 (470)
..+|. -...+.|-+||.=|.-.
T Consensus 555 ~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~ 606 (654)
T COG1199 555 VGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSED 606 (654)
T ss_pred EecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCC
Confidence 66553 23344899999999643
No 151
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.91 E-value=4.3e-05 Score=76.92 Aligned_cols=122 Identities=19% Similarity=0.251 Sum_probs=98.9
Q ss_pred ccHHHHHHHHHHHH---cCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccC-CeeE-EEecc
Q 012133 49 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG-KFTV-LVATD 122 (470)
Q Consensus 49 ~~k~~~l~~ll~~~---~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g-~~~i-LVaTd 122 (470)
+.|+++|..-|..+ ...-+.|||..-....+.+.-.|.+ ++.|+-|-|.|++++|..+++.|++. .++| ||+-.
T Consensus 619 STKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLk 698 (791)
T KOG1002|consen 619 STKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLK 698 (791)
T ss_pred hhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEec
Confidence 35677766544333 2234889999999999999888886 89999999999999999999999975 4555 46667
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHhcccCCCC--CCCeEEEeeCh
Q 012133 123 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG--KEGTAILMFTS 170 (470)
Q Consensus 123 v~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g--~~g~~i~l~~~ 170 (470)
+...-+++....+|+..|+-|++..-.|.--|..|.| ++-.++.|+-.
T Consensus 699 AGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iE 748 (791)
T KOG1002|consen 699 AGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIE 748 (791)
T ss_pred cCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehh
Confidence 7888899999999999999999999888888888887 56667777655
No 152
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.88 E-value=6.3e-05 Score=83.79 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=58.0
Q ss_pred cCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCC--CccEEEEe
Q 012133 63 AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP--NVDLIIHY 139 (470)
Q Consensus 63 ~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip--~v~~VI~~ 139 (470)
..++++||++++.+..+.+++.|.. .+.+ ...+.-. .+.+++++|+++...||++|...-+|||+| +...||..
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~ 721 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVIT 721 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEe
Confidence 4568999999999999999999874 2333 4444321 245689999988889999999999999997 34555655
Q ss_pred cCC
Q 012133 140 ELP 142 (470)
Q Consensus 140 ~~p 142 (470)
.+|
T Consensus 722 kLP 724 (820)
T PRK07246 722 RLP 724 (820)
T ss_pred cCC
Confidence 555
No 153
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.79 E-value=0.00015 Score=79.55 Aligned_cols=78 Identities=26% Similarity=0.398 Sum_probs=58.3
Q ss_pred cCCCeEEEEeCchHHHHHHHHHHhcCC-cEEEEeCCCCHHHHHHHHcccc----cCCeeEEEecccccccCCCCC--ccE
Q 012133 63 AKGGKTIVFTQTKRDADEVSLALTSII-ASEALHGDISQHQRERTLNGFR----QGKFTVLVATDVAARGLDIPN--VDL 135 (470)
Q Consensus 63 ~~~~~~lVF~~t~~~~~~l~~~l~~~~-~~~~lhg~~~~~~R~~~~~~f~----~g~~~iLVaTdv~~~Gidip~--v~~ 135 (470)
...+.+|||+++.+..++++..|.... .-...++.. .+.++++.|+ .++-.||++|....+|||+|+ +.+
T Consensus 532 ~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 532 EKHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 345679999999999999999987422 233446643 4667776666 356789999999999999986 677
Q ss_pred EEEecCCC
Q 012133 136 IIHYELPN 143 (470)
Q Consensus 136 VI~~~~p~ 143 (470)
||...+|.
T Consensus 609 vII~kLPF 616 (697)
T PRK11747 609 VIITKIPF 616 (697)
T ss_pred EEEEcCCC
Confidence 88777663
No 154
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.76 E-value=0.0002 Score=77.70 Aligned_cols=164 Identities=20% Similarity=0.169 Sum_probs=103.7
Q ss_pred EeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHH-HHHHHHHHHHcCCCeEEEEeCchHHHHHH
Q 012133 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR-TILSDLITVYAKGGKTIVFTQTKRDADEV 81 (470)
Q Consensus 3 fSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~-~~l~~ll~~~~~~~~~lVF~~t~~~~~~l 81 (470)
|+.|.-.+..++..-|..+.+.|... .+....+.... +......|. .++.++...+..+.++||-+.+.+..+.+
T Consensus 370 mTGTa~te~~EF~~iY~l~vv~iPTn---rp~~R~D~~D~-vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~l 445 (822)
T COG0653 370 MTGTADTEEEEFDVIYGLDVVVIPTN---RPIIRLDEPDL-VYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELL 445 (822)
T ss_pred CCCcchhhhhhhhhccCCceeeccCC---CcccCCCCccc-cccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhH
Confidence 45666666666666665554444321 11111111111 112223444 45556667778889999999999999999
Q ss_pred HHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCcc-----------EEEEecCCCChhHHH
Q 012133 82 SLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD-----------LIIHYELPNDPETFV 149 (470)
Q Consensus 82 ~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~-----------~VI~~~~p~~~~~y~ 149 (470)
.+.|.+ +++..+|...-.. |+.-+-...-..-.|-|||++|.||.||.--. +||-..--.|..---
T Consensus 446 s~~L~~~~i~h~VLNAk~h~--~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDn 523 (822)
T COG0653 446 SKLLRKAGIPHNVLNAKNHA--REAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDN 523 (822)
T ss_pred HHHHHhcCCCceeeccccHH--HHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHH
Confidence 999985 7887788777543 33333333322346889999999999994222 344443333444445
Q ss_pred HHhcccCCCCCCCeEEEeeChhh
Q 012133 150 HRSGRTGRAGKEGTAILMFTSSQ 172 (470)
Q Consensus 150 qr~GR~gR~g~~g~~i~l~~~~~ 172 (470)
|--||+||.|.+|.+-.+++-.+
T Consensus 524 QLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 524 QLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred HhhcccccCCCcchhhhhhhhHH
Confidence 89999999999999888877655
No 155
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.75 E-value=8.4e-05 Score=66.70 Aligned_cols=105 Identities=24% Similarity=0.396 Sum_probs=70.4
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhcCC---cEEEEeCCCCHHHHHHHHcccccCCeeEEEecc--cccccCCCCC--ccEE
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTSII---ASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPN--VDLI 136 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~~~---~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd--v~~~Gidip~--v~~V 136 (470)
.++.+|||+++.+..+.+.+.+.... ....+.- ...++.++++.|+.+.-.||+++. .+.+|||+|+ +..|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 45899999999999999999987532 1222332 356788999999999999999998 9999999996 6678
Q ss_pred EEecCCC----Ch--------------------------hHHHHHhcccCCCCCCCeEEEeeCh
Q 012133 137 IHYELPN----DP--------------------------ETFVHRSGRTGRAGKEGTAILMFTS 170 (470)
Q Consensus 137 I~~~~p~----~~--------------------------~~y~qr~GR~gR~g~~g~~i~l~~~ 170 (470)
|...+|. ++ ....|-+||.-|....--++++++.
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 8888774 11 1116889999998554444444444
No 156
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=97.72 E-value=0.0007 Score=73.21 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=100.4
Q ss_pred ccHHHHHHHHHHHH-cCCCeEEEEeCchHHHHHHHHHHhc----C-------------------CcEEEEeCCCCHHHHH
Q 012133 49 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS----I-------------------IASEALHGDISQHQRE 104 (470)
Q Consensus 49 ~~k~~~l~~ll~~~-~~~~~~lVF~~t~~~~~~l~~~l~~----~-------------------~~~~~lhg~~~~~~R~ 104 (470)
+.|+-+|.+||... ..+.++|||..+....+.|..+|.. + ..-..|.|..+..+|+
T Consensus 1125 SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~ 1204 (1567)
T KOG1015|consen 1125 SGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRK 1204 (1567)
T ss_pred CcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHH
Confidence 56777888888654 4567999999999998888888752 1 1346688999999999
Q ss_pred HHHcccccCC----eeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEee
Q 012133 105 RTLNGFRQGK----FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 168 (470)
Q Consensus 105 ~~~~~f~~g~----~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~ 168 (470)
++.+.|.+-. .-.||+|.+..-|||+-..+-||.+|..|++.--+|-+=|+-|.|+.-.||++-
T Consensus 1205 k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYR 1272 (1567)
T KOG1015|consen 1205 KWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYR 1272 (1567)
T ss_pred HHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehh
Confidence 9999998632 347899999999999999999999999999999999999999999887777763
No 157
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=97.69 E-value=0.00054 Score=65.85 Aligned_cols=12 Identities=25% Similarity=0.313 Sum_probs=5.6
Q ss_pred eecCHHHHHHHH
Q 012133 315 FDLPEEIAKELL 326 (470)
Q Consensus 315 fdv~~~~a~~i~ 326 (470)
.|+.+..|.++-
T Consensus 284 ~~~Re~Taski~ 295 (465)
T KOG3973|consen 284 MDRRERTASKIH 295 (465)
T ss_pred cchhhhhhhhhc
Confidence 455545444443
No 158
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=97.64 E-value=0.0003 Score=71.15 Aligned_cols=105 Identities=18% Similarity=0.379 Sum_probs=91.2
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccC-CeeE-EEecccccccCCCCCccEEEEec
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG-KFTV-LVATDVAARGLDIPNVDLIIHYE 140 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g-~~~i-LVaTdv~~~Gidip~v~~VI~~~ 140 (470)
...|.|||+--....+.|...+.+ ++...-|.|..+...|....+.|+.. +++| +++-.++..|+++...+.||...
T Consensus 491 ~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaE 570 (689)
T KOG1000|consen 491 PPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAE 570 (689)
T ss_pred CCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEE
Confidence 456999999999999999999984 89999999999999999999999964 3454 34557889999999999999999
Q ss_pred CCCChhHHHHHhcccCCCCCCCeEEEee
Q 012133 141 LPNDPETFVHRSGRTGRAGKEGTAILMF 168 (470)
Q Consensus 141 ~p~~~~~y~qr~GR~gR~g~~g~~i~l~ 168 (470)
++|++..++|.=-|+.|.|++..+.+.|
T Consensus 571 L~wnPgvLlQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 571 LHWNPGVLLQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred ecCCCceEEechhhhhhccccceeeEEE
Confidence 9999999999999999999776655544
No 159
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.59 E-value=0.001 Score=67.61 Aligned_cols=107 Identities=15% Similarity=0.257 Sum_probs=75.5
Q ss_pred eEEEEeCchHHHHHHHHHHh---c--CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc------cccccCCCCCccE
Q 012133 67 KTIVFTQTKRDADEVSLALT---S--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVDL 135 (470)
Q Consensus 67 ~~lVF~~t~~~~~~l~~~l~---~--~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd------v~~~Gidip~v~~ 135 (470)
-.||.|+|++.|.++...-+ + ++.+.++||++|..++...|+. ...|+|||+ |--.++|+..|++
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~----g~EivVaTPgRlid~VkmKatn~~rvS~ 373 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKE----GAEIVVATPGRLIDMVKMKATNLSRVSY 373 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhc----CCeEEEechHHHHHHHHhhcccceeeeE
Confidence 35778899999988866554 3 4779999999999999888873 679999998 5567899999998
Q ss_pred EEEe--------cCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhC
Q 012133 136 IIHY--------ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 184 (470)
Q Consensus 136 VI~~--------~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~ 184 (470)
+|.- ++-..+.+..|-+ ++-...++++..-...++.+.+.+-
T Consensus 374 LV~DEadrmfdmGfe~qVrSI~~hi-------rpdrQtllFsaTf~~kIe~lard~L 423 (731)
T KOG0339|consen 374 LVLDEADRMFDMGFEPQVRSIKQHI-------RPDRQTLLFSATFKKKIEKLARDIL 423 (731)
T ss_pred EEEechhhhhccccHHHHHHHHhhc-------CCcceEEEeeccchHHHHHHHHHHh
Confidence 7732 2223455555555 3445556666655566666655543
No 160
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.40 E-value=0.0032 Score=69.57 Aligned_cols=79 Identities=15% Similarity=0.257 Sum_probs=57.6
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhcC-C-------cEEEEeCCCCHHHHHHHHccccc----CCeeEEEec--ccccccCC
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTSI-I-------ASEALHGDISQHQRERTLNGFRQ----GKFTVLVAT--DVAARGLD 129 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~~-~-------~~~~lhg~~~~~~R~~~~~~f~~----g~~~iLVaT--dv~~~Gid 129 (470)
.++.+|||+++-...+.+++.+.+. + ....+-+. ...++..+++.|+. +.-.||+|+ ..+.+|||
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~-~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGID 599 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK-DAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGID 599 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC-CcchHHHHHHHHHHHHhcCCceEEEEecCCcccCccc
Confidence 3588999999999999988877631 1 11222221 12577889999964 355699998 88999999
Q ss_pred CCC--ccEEEEecCCC
Q 012133 130 IPN--VDLIIHYELPN 143 (470)
Q Consensus 130 ip~--v~~VI~~~~p~ 143 (470)
+++ ...||...+|.
T Consensus 600 f~~~~~r~ViivGlPf 615 (705)
T TIGR00604 600 FCDDLGRAVIMVGIPY 615 (705)
T ss_pred cCCCCCcEEEEEccCC
Confidence 986 56788888775
No 161
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.00026 Score=75.02 Aligned_cols=210 Identities=20% Similarity=0.278 Sum_probs=114.9
Q ss_pred EEEEeCchHHHHHHHHHHhc------CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-----ccccc-CCCCCccE
Q 012133 68 TIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNVDL 135 (470)
Q Consensus 68 ~lVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-----v~~~G-idip~v~~ 135 (470)
+||++||++.|.++++.+.. .+.+..++|+++...+...++. + .+|||+|+ .+.++ +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 99999999999999988863 3568999999998888766666 4 89999997 55665 99999999
Q ss_pred EEE------ec--CCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCccccCCCCHHH--HH------
Q 012133 136 IIH------YE--LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED--VL------ 199 (470)
Q Consensus 136 VI~------~~--~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~--~~------ 199 (470)
+|. .| +..+++..+-.+- .-..+++++..-...+..+.+.+-.++..+.+..... ..
T Consensus 178 lVlDEADrmLd~Gf~~~i~~I~~~~p-------~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~ 250 (513)
T COG0513 178 LVLDEADRMLDMGFIDDIEKILKALP-------PDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQF 250 (513)
T ss_pred EEeccHhhhhcCCCHHHHHHHHHhCC-------cccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEE
Confidence 884 22 2223332222221 1355555554433346666555544443322220000 00
Q ss_pred -------HHHHHHHHHHHcccCccchhhhHHHHHHHHHhhCHHHHHHHHHHHcCCCC---------CCCCcccccCCCCe
Q 012133 200 -------ESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSR---------PPSSRSLINHEQGW 263 (470)
Q Consensus 200 -------~~~~~~~~~~l~~~~~~~~~~~~~~a~~l~~~~~~~~l~~al~~l~~~~~---------~~~~r~l~~~~~~~ 263 (470)
+.....+...+........-.|...-. ..+.|+..|.. .|+.. ..+.+.+.....+-
T Consensus 251 ~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~------~~~~l~~~l~~-~g~~~~~lhG~l~q~~R~~~l~~F~~g~ 323 (513)
T COG0513 251 YLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKR------LVEELAESLRK-RGFKVAALHGDLPQEERDRALEKFKDGE 323 (513)
T ss_pred EEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHH------HHHHHHHHHHH-CCCeEEEecCCCCHHHHHHHHHHHHcCC
Confidence 012222222233222221111111000 01111211211 12211 11122233345677
Q ss_pred EEEEEeeCCccccCCcchhhHHhHhhhhcCcCcC
Q 012133 264 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 297 (470)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~ 297 (470)
..+.|.++. +.++++..+|...++...+...+
T Consensus 324 ~~vLVaTDv--aaRGiDi~~v~~VinyD~p~~~e 355 (513)
T COG0513 324 LRVLVATDV--AARGLDIPDVSHVINYDLPLDPE 355 (513)
T ss_pred CCEEEEech--hhccCCccccceeEEccCCCCHH
Confidence 788888887 56788999888888888775444
No 162
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=97.31 E-value=7.6e-05 Score=46.32 Aligned_cols=16 Identities=44% Similarity=1.333 Sum_probs=15.5
Q ss_pred cccCCCCCccCCCCCC
Q 012133 455 CFNCGKSGHRASECPN 470 (470)
Q Consensus 455 c~~c~~~gh~~~~c~~ 470 (470)
|+.|++.|||.+|||+
T Consensus 11 C~~C~~~GH~i~dCP~ 26 (32)
T PF13696_consen 11 CHRCGQKGHWIQDCPT 26 (32)
T ss_pred eecCCCCCccHhHCCC
Confidence 9999999999999995
No 163
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.29 E-value=0.0033 Score=67.65 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=61.3
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhcCCc-EEEEeCCCCHHHHHHHHcccccC----CeeEEEecccccccCCC--------
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTSIIA-SEALHGDISQHQRERTLNGFRQG----KFTVLVATDVAARGLDI-------- 130 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~~~~-~~~lhg~~~~~~R~~~~~~f~~g----~~~iLVaTdv~~~Gidi-------- 130 (470)
..+.+||.+.+....+.+++.|...+. ...+.|+.+ .+..++++|+.. .-.||++|+.+-+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 467999999999999999999986542 455666543 345677888863 68999999999999999
Q ss_pred --CCccEEEEecCCC
Q 012133 131 --PNVDLIIHYELPN 143 (470)
Q Consensus 131 --p~v~~VI~~~~p~ 143 (470)
..+++||...+|.
T Consensus 547 ~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 547 KDNLLTDLIITCAPF 561 (636)
T ss_pred CCCcccEEEEEeCCC
Confidence 3578898877773
No 164
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.26 E-value=0.00076 Score=74.46 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=37.6
Q ss_pred EecccccccCCCCC----------------------c----------cEEEEecCCCChhHHHH--HhcccCCCCCCCeE
Q 012133 119 VATDVAARGLDIPN----------------------V----------DLIIHYELPNDPETFVH--RSGRTGRAGKEGTA 164 (470)
Q Consensus 119 VaTdv~~~Gidip~----------------------v----------~~VI~~~~p~~~~~y~q--r~GR~gR~g~~g~~ 164 (470)
|+|.+.+.|+|+|. + ++||.|++-.+..--+| |++|++|. +.+
T Consensus 431 ~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEvyra~r~~r~---~rV 507 (814)
T TIGR00596 431 FEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEVYKASRPLRP---LRV 507 (814)
T ss_pred ccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHHHHccCCCCC---cEE
Confidence 77888999999997 5 89999997766555566 67766664 678
Q ss_pred EEeeCh
Q 012133 165 ILMFTS 170 (470)
Q Consensus 165 i~l~~~ 170 (470)
|+|+..
T Consensus 508 yfL~y~ 513 (814)
T TIGR00596 508 YFLYYG 513 (814)
T ss_pred EEEEEC
Confidence 877764
No 165
>COG4889 Predicted helicase [General function prediction only]
Probab=97.17 E-value=0.00024 Score=76.14 Aligned_cols=101 Identities=21% Similarity=0.409 Sum_probs=79.4
Q ss_pred CeEEEEeCchHHHHHHHHHHhc--------------C--CcEEEEeCCCCHHHHHHHHc---ccccCCeeEEEecccccc
Q 012133 66 GKTIVFTQTKRDADEVSLALTS--------------I--IASEALHGDISQHQRERTLN---GFRQGKFTVLVATDVAAR 126 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~--------------~--~~~~~lhg~~~~~~R~~~~~---~f~~g~~~iLVaTdv~~~ 126 (470)
.++|-||.+.++..++++.+.. . +.+..+.|.|...+|...+. .|...+++||---..+.+
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSE 540 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSE 540 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhc
Confidence 3689999998888888766532 1 34556678899888855443 456678999988899999
Q ss_pred cCCCCCccEEEEecCCCChhHHHHHhcccCCCC---CCCeEEE
Q 012133 127 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG---KEGTAIL 166 (470)
Q Consensus 127 Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g---~~g~~i~ 166 (470)
|||+|.++-||.+++..+..+.+|.+||+.|-- +-|..|+
T Consensus 541 GVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIIL 583 (1518)
T COG4889 541 GVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIIL 583 (1518)
T ss_pred CCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEE
Confidence 999999999999999999999999999999932 2355544
No 166
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.14 E-value=0.0075 Score=64.91 Aligned_cols=69 Identities=10% Similarity=0.187 Sum_probs=53.1
Q ss_pred CeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-----cccc--cCCCCCc
Q 012133 66 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR--GLDIPNV 133 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-----v~~~--Gidip~v 133 (470)
.++||.++|++.+.++++.+.+ .+.+..+||+.+...+...++. ..+|||+|+ .+.. .+++..+
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~----~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQ----GVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhC----CCCEEEECHHHHHHHHHhccccchhhe
Confidence 5899999999999999887763 3678899999988877666643 578999996 3322 3667778
Q ss_pred cEEEE
Q 012133 134 DLIIH 138 (470)
Q Consensus 134 ~~VI~ 138 (470)
.+||.
T Consensus 161 ~~lVi 165 (572)
T PRK04537 161 EICVL 165 (572)
T ss_pred eeeEe
Confidence 87764
No 167
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.02 E-value=0.0067 Score=62.15 Aligned_cols=69 Identities=17% Similarity=0.298 Sum_probs=50.9
Q ss_pred CeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-----ccccc-CCCCCcc
Q 012133 66 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNVD 134 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-----v~~~G-idip~v~ 134 (470)
..+||..||++.+++++..-++ .+.+...+++.+-.++..-+ ...+.|||||+ +.++| |.++++.
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~----~~gcdIlvaTpGrL~d~~e~g~i~l~~~k 228 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFI----KRGCDILVATPGRLKDLIERGKISLDNCK 228 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhh----ccCccEEEecCchhhhhhhcceeehhhCc
Confidence 5799999999999999988775 35678888885544443333 33799999996 55655 7777777
Q ss_pred EEEE
Q 012133 135 LIIH 138 (470)
Q Consensus 135 ~VI~ 138 (470)
++|.
T Consensus 229 ~~vL 232 (482)
T KOG0335|consen 229 FLVL 232 (482)
T ss_pred EEEe
Confidence 7663
No 168
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.99 E-value=0.0016 Score=64.22 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc----
Q 012133 52 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD---- 122 (470)
Q Consensus 52 ~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd---- 122 (470)
+.+|..|+.. .+...+||.+||++.|.++++.++. ++.+..|-|+|....+...+.+ +..|||||+
T Consensus 117 LPIl~~LL~~-p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~k----kPhilVaTPGrL~ 191 (476)
T KOG0330|consen 117 LPILQRLLQE-PKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSK----KPHILVATPGRLW 191 (476)
T ss_pred HHHHHHHHcC-CCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhc----CCCEEEeCcHHHH
Confidence 3455555542 2346899999999999999988873 4789999999987765544433 678899998
Q ss_pred --cc-cccCCCCCccEEE--------EecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCccccC
Q 012133 123 --VA-ARGLDIPNVDLII--------HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 191 (470)
Q Consensus 123 --v~-~~Gidip~v~~VI--------~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~ 191 (470)
+. ..|+.+..+.+.| +.|+-...+.++-++- ...-.+|++..-...+++|+...-..+..+.
T Consensus 192 dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip-------~erqt~LfsATMt~kv~kL~rasl~~p~~v~ 264 (476)
T KOG0330|consen 192 DHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIP-------RERQTFLFSATMTKKVRKLQRASLDNPVKVA 264 (476)
T ss_pred HHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcC-------ccceEEEEEeecchhhHHHHhhccCCCeEEe
Confidence 22 5777777777665 4455445555555553 2344566666555666677655544444444
Q ss_pred CCCH
Q 012133 192 PPVV 195 (470)
Q Consensus 192 ~p~~ 195 (470)
.+..
T Consensus 265 ~s~k 268 (476)
T KOG0330|consen 265 VSSK 268 (476)
T ss_pred ccch
Confidence 4443
No 169
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=96.84 E-value=0.0042 Score=69.19 Aligned_cols=89 Identities=17% Similarity=0.159 Sum_probs=67.4
Q ss_pred EEEeCchHHHHHHHHHHhc-----C--CcEEEEeCCCCHHHHHHHHccc----------------------cc----CCe
Q 012133 69 IVFTQTKRDADEVSLALTS-----I--IASEALHGDISQHQRERTLNGF----------------------RQ----GKF 115 (470)
Q Consensus 69 lVF~~t~~~~~~l~~~l~~-----~--~~~~~lhg~~~~~~R~~~~~~f----------------------~~----g~~ 115 (470)
||-+++++.+..+++.|.. . +.+.++|+..+...|..+++.. ++ +..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~ 839 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHL 839 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCC
Confidence 7778888888888887753 1 3477899999877776655442 11 356
Q ss_pred eEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCC
Q 012133 116 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 160 (470)
Q Consensus 116 ~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~ 160 (470)
.|+|+|+|++.|+|+. .+++|- -|.+..+++||+||+.|.+.
T Consensus 840 ~i~v~Tqv~E~g~D~d-fd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 840 FIVLATPVEEVGRDHD-YDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred eEEEEeeeEEEEeccc-CCeeee--ccCcHHHHHHHhhccccccc
Confidence 8999999999999994 455553 36788999999999999763
No 170
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.75 E-value=0.015 Score=59.49 Aligned_cols=112 Identities=14% Similarity=0.192 Sum_probs=74.2
Q ss_pred CeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-------cccccCCCCCc
Q 012133 66 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-------VAARGLDIPNV 133 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-------v~~~Gidip~v 133 (470)
-++||.|||++.+.+++...++ .+.+...-|+|+-+.++.+++. ...|+|||+ --..++|+.++
T Consensus 253 TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs----~PDIVIATPGRlIDHlrNs~sf~ldsi 328 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS----RPDIVIATPGRLIDHLRNSPSFNLDSI 328 (691)
T ss_pred eeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhh----CCCEEEecchhHHHHhccCCCccccce
Confidence 4899999999998888776553 3667777899999999999987 678999998 23456777777
Q ss_pred cEEEEecCCCChh--------HHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCcc
Q 012133 134 DLIIHYELPNDPE--------TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 188 (470)
Q Consensus 134 ~~VI~~~~p~~~~--------~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~ 188 (470)
.++|.-....-.+ .+++.+- ......|++..--..++.|.+..-.++.
T Consensus 329 EVLvlDEADRMLeegFademnEii~lcp-------k~RQTmLFSATMteeVkdL~slSL~kPv 384 (691)
T KOG0338|consen 329 EVLVLDEADRMLEEGFADEMNEIIRLCP-------KNRQTMLFSATMTEEVKDLASLSLNKPV 384 (691)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHhcc-------ccccceeehhhhHHHHHHHHHhhcCCCe
Confidence 7777543332222 2333332 2234556666555556666555444443
No 171
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.64 E-value=0.028 Score=61.17 Aligned_cols=63 Identities=10% Similarity=0.131 Sum_probs=44.6
Q ss_pred HHHHcccccCCeeEEEecc----cccccCCCCCccEEEEecC------CC------ChhHHHHHhcccCCCCCCCeEEEe
Q 012133 104 ERTLNGFRQGKFTVLVATD----VAARGLDIPNVDLIIHYEL------PN------DPETFVHRSGRTGRAGKEGTAILM 167 (470)
Q Consensus 104 ~~~~~~f~~g~~~iLVaTd----v~~~Gidip~v~~VI~~~~------p~------~~~~y~qr~GR~gR~g~~g~~i~l 167 (470)
+.+++.|.. +..|||+|+ +++ +++++|+..|. |. ....+.|-+||+||..+.|.+++.
T Consensus 462 d~~l~~~~~-~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq 535 (665)
T PRK14873 462 DQVVDTVDA-GPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVV 535 (665)
T ss_pred HHHHHhhcc-CCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEE
Confidence 357788864 899999999 555 35677664442 22 233447899999999899999998
Q ss_pred eChhh
Q 012133 168 FTSSQ 172 (470)
Q Consensus 168 ~~~~~ 172 (470)
..++.
T Consensus 536 ~~p~~ 540 (665)
T PRK14873 536 AESSL 540 (665)
T ss_pred eCCCC
Confidence 65443
No 172
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.59 E-value=0.012 Score=62.32 Aligned_cols=119 Identities=15% Similarity=0.257 Sum_probs=92.2
Q ss_pred ccHHHHHHHHHHHH--cCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHccccc--CCeeEE-Eecc
Q 012133 49 TSKRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ--GKFTVL-VATD 122 (470)
Q Consensus 49 ~~k~~~l~~ll~~~--~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~--g~~~iL-VaTd 122 (470)
+.|+..+..++..+ ....+++|...-.....-+...|.+ ++....+||.+..++|+.+++.|.. +..+|+ ++=.
T Consensus 728 S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLt 807 (901)
T KOG4439|consen 728 SCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLT 807 (901)
T ss_pred hhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEc
Confidence 45555555555433 3446777666665656666777875 6778899999999999999999964 445554 5557
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEe
Q 012133 123 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 167 (470)
Q Consensus 123 v~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l 167 (470)
..+.|||+-..+|+|..|+-|++.-=.|.+-|.-|.|++-.+++.
T Consensus 808 AGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 808 AGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred cCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 788999999999999999999999999999999999988777664
No 173
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.56 E-value=0.016 Score=57.65 Aligned_cols=273 Identities=15% Similarity=0.214 Sum_probs=137.8
Q ss_pred CHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHH--HHHHHHHHHH--------cCCCeEEEEeCchHH
Q 012133 8 PSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR--TILSDLITVY--------AKGGKTIVFTQTKRD 77 (470)
Q Consensus 8 p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~--~~l~~ll~~~--------~~~~~~lVF~~t~~~ 77 (470)
|+-++++.+.-+..|..|.- ..++.+.+.+...-+......|. .++.-++... .....+||+++|++.
T Consensus 229 pevmenIkK~GFqKPtPIqS--QaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreL 306 (629)
T KOG0336|consen 229 PEVMENIKKTGFQKPTPIQS--QAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTREL 306 (629)
T ss_pred HHHHHHHHhccCCCCCcchh--cccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHH
Confidence 44455566666777777743 34555556666555555544442 1122122111 123479999999999
Q ss_pred HHHHHHHHh----cCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc------cccccCCCCCccEEEEec------C
Q 012133 78 ADEVSLALT----SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVDLIIHYE------L 141 (470)
Q Consensus 78 ~~~l~~~l~----~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd------v~~~Gidip~v~~VI~~~------~ 141 (470)
+.++..... +++...+++|+-...++.+.+++ ...|+|||+ ...--||+..|+++|.-. +
T Consensus 307 alqie~e~~kysyng~ksvc~ygggnR~eqie~lkr----gveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDM 382 (629)
T KOG0336|consen 307 ALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKR----GVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDM 382 (629)
T ss_pred HHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhc----CceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcc
Confidence 888765554 35778888888766666555554 689999997 234446777777776422 1
Q ss_pred CCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCcccc-----------------CCCCHHHHHHHHHH
Q 012133 142 PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV-----------------SPPVVEDVLESSAE 204 (470)
Q Consensus 142 p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~-----------------~~p~~~~~~~~~~~ 204 (470)
-..+ -+.++= -.=++-...++.+..-..-+++|...+-...-.+ -+++..+.+ +..+
T Consensus 383 gFEp--qIrkil---ldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~-~~~~ 456 (629)
T KOG0336|consen 383 GFEP--QIRKIL---LDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKL-EIVQ 456 (629)
T ss_pred cccH--HHHHHh---hhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHH-HHHH
Confidence 1111 111110 0013334455555555556666655543332211 112222211 1111
Q ss_pred HHHHHHcccCccchhhhH--HHHHHHHHhhCHHHHHHHHHHHcC-CCCCCCCcccccCCCCeEEEEEeeCCccccCCcch
Q 012133 205 QVVATLNGVHPESVEFFT--PTAQRLIEEKGTDALAAALAQLSG-FSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSA 281 (470)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~--~~a~~l~~~~~~~~l~~al~~l~~-~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (470)
.++..+.+ +...+-+.. ..|..|-.++....+.+. .|.| -++....+++...+.+.+++++.++. +.++++.
T Consensus 457 ~f~~~ms~-ndKvIiFv~~K~~AD~LSSd~~l~gi~~q--~lHG~r~Q~DrE~al~~~ksG~vrILvaTDl--aSRGlDv 531 (629)
T KOG0336|consen 457 FFVANMSS-NDKVIIFVSRKVMADHLSSDFCLKGISSQ--SLHGNREQSDREMALEDFKSGEVRILVATDL--ASRGLDV 531 (629)
T ss_pred HHHHhcCC-CceEEEEEechhhhhhccchhhhcccchh--hccCChhhhhHHHHHHhhhcCceEEEEEech--hhcCCCc
Confidence 11111111 111111110 011111111111111110 0111 11222334455667889999999987 6788999
Q ss_pred hhHHhHhhhhcCcCcC
Q 012133 282 RSVMGFLSDVYPTAAD 297 (470)
Q Consensus 282 ~~v~~~l~~~~~~~~~ 297 (470)
.||.+.++..++..-+
T Consensus 532 ~DiTHV~NyDFP~nIe 547 (629)
T KOG0336|consen 532 PDITHVYNYDFPRNIE 547 (629)
T ss_pred hhcceeeccCCCccHH
Confidence 9999998888775443
No 174
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.55 E-value=0.019 Score=63.07 Aligned_cols=92 Identities=21% Similarity=0.265 Sum_probs=72.6
Q ss_pred cccHHHHHHHHH-HHHcCCCeEEEEeCchHHHHHHHHHHhc--CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccc
Q 012133 48 ATSKRTILSDLI-TVYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 124 (470)
Q Consensus 48 ~~~k~~~l~~ll-~~~~~~~~~lVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~ 124 (470)
...|..+...++ ..+..+.++||.+||++.+.++++.|++ +..+..+|++++..+|.+.+.++.++..+|+|+|..+
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsa 251 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSA 251 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHH
Confidence 345666554444 3344567999999999999999999986 4578999999999999999999999999999999754
Q ss_pred cccCCCCCccEEEEec
Q 012133 125 ARGLDIPNVDLIIHYE 140 (470)
Q Consensus 125 ~~Gidip~v~~VI~~~ 140 (470)
.. +.+.++.+||.-+
T Consensus 252 l~-~p~~~l~liVvDE 266 (679)
T PRK05580 252 LF-LPFKNLGLIIVDE 266 (679)
T ss_pred hc-ccccCCCEEEEEC
Confidence 32 5677888888544
No 175
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=96.53 E-value=0.001 Score=44.46 Aligned_cols=16 Identities=50% Similarity=1.273 Sum_probs=15.3
Q ss_pred ccccCCCCCccCCCCC
Q 012133 454 ACFNCGKSGHRASECP 469 (470)
Q Consensus 454 ~c~~c~~~gh~~~~c~ 469 (470)
.|.+|++.|||+.|||
T Consensus 6 ~CqkC~~~GH~tyeC~ 21 (42)
T PF13917_consen 6 RCQKCGQKGHWTYECP 21 (42)
T ss_pred cCcccCCCCcchhhCC
Confidence 4999999999999999
No 176
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.53 E-value=0.011 Score=57.05 Aligned_cols=79 Identities=20% Similarity=0.369 Sum_probs=59.3
Q ss_pred HHHcccccCCeeEEEecccccccCCCCCc--------cEEEEecCCCChhHHHHHhcccCCCCCC-CeEEEeeC---hhh
Q 012133 105 RTLNGFRQGKFTVLVATDVAARGLDIPNV--------DLIIHYELPNDPETFVHRSGRTGRAGKE-GTAILMFT---SSQ 172 (470)
Q Consensus 105 ~~~~~f~~g~~~iLVaTdv~~~Gidip~v--------~~VI~~~~p~~~~~y~qr~GR~gR~g~~-g~~i~l~~---~~~ 172 (470)
...+.|.+|+..|+|.|+.++.||.+..- .+-|...+||+.+..+|..||+.|.++. ...|.++. +-|
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 45678999999999999999999988532 3566789999999999999999999854 33344333 235
Q ss_pred HHHHHHHHHHh
Q 012133 173 RRTVRSLERDV 183 (470)
Q Consensus 173 ~~~~~~i~~~~ 183 (470)
+.....+.+.+
T Consensus 132 ~Rfas~va~rL 142 (278)
T PF13871_consen 132 RRFASTVARRL 142 (278)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 177
>smart00343 ZnF_C2HC zinc finger.
Probab=96.53 E-value=0.001 Score=39.79 Aligned_cols=15 Identities=67% Similarity=1.688 Sum_probs=14.7
Q ss_pred cccCCCCCccCCCCC
Q 012133 455 CFNCGKSGHRASECP 469 (470)
Q Consensus 455 c~~c~~~gh~~~~c~ 469 (470)
|++|++.||++++||
T Consensus 2 C~~CG~~GH~~~~C~ 16 (26)
T smart00343 2 CYNCGKEGHIARDCP 16 (26)
T ss_pred CccCCCCCcchhhCC
Confidence 999999999999998
No 178
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.53 E-value=0.016 Score=61.36 Aligned_cols=90 Identities=20% Similarity=0.246 Sum_probs=71.7
Q ss_pred ccHHHHHHHHHH-HHcCCCeEEEEeCchHHHHHHHHHHhc--CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccccc
Q 012133 49 TSKRTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 125 (470)
Q Consensus 49 ~~k~~~l~~ll~-~~~~~~~~lVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~ 125 (470)
.-|.++...++. .+..+.++||.+|++..+.++++.|++ ...+..+|+.++..+|.++..+..+++.+|+|+|..+.
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 456665555443 344567999999999999999999986 35688999999999999999999999999999997544
Q ss_pred ccCCCCCccEEEEe
Q 012133 126 RGLDIPNVDLIIHY 139 (470)
Q Consensus 126 ~Gidip~v~~VI~~ 139 (470)
. +.++++.+||.-
T Consensus 88 f-~p~~~l~lIIVD 100 (505)
T TIGR00595 88 F-LPFKNLGLIIVD 100 (505)
T ss_pred c-CcccCCCEEEEE
Confidence 3 567788888843
No 179
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=96.43 E-value=0.0072 Score=53.02 Aligned_cols=67 Identities=21% Similarity=0.269 Sum_probs=37.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccCCCCCccCCCCCC
Q 012133 393 RSSRSWGSDDEDGFSSSRGGRS-FRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSRSFGGACFNCGKSGHRASECPN 470 (470)
Q Consensus 393 ~~~~~~g~~g~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~g~~c~~c~~~gh~~~~c~~ 470 (470)
..|+.|+..||.++.+...... ....+..++..|+....-..... .+....||+|++.||+++|||+
T Consensus 28 ~~C~~Cg~~GH~~~~Cp~~~~~~~~~~C~~Cg~~GH~~~~Cp~~~~-----------~~~~~~C~~Cg~~GH~~~~C~~ 95 (148)
T PTZ00368 28 RPCYKCGEPGHLSRECPSAPGGRGERSCYNCGKTGHLSRECPEAPP-----------GSGPRSCYNCGQTGHISRECPN 95 (148)
T ss_pred ccCccCCCCCcCcccCcCCCCCCCCcccCCCCCcCcCcccCCCccc-----------CCCCcccCcCCCCCcccccCCC
Confidence 5688899999988877543211 11234444433322111100000 0112359999999999999985
No 180
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=96.41 E-value=0.012 Score=51.57 Aligned_cols=68 Identities=22% Similarity=0.282 Sum_probs=38.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccCCCCCccCCCCCC
Q 012133 393 RSSRSWGSDDEDGFSSSRGGR-SFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSRSFGGACFNCGKSGHRASECPN 470 (470)
Q Consensus 393 ~~~~~~g~~g~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~g~~c~~c~~~gh~~~~c~~ 470 (470)
..|+.|+..||.+..++.... +....+..++..++....-....- + ++....||+|++.||+++|||+
T Consensus 53 ~~C~~Cg~~GH~~~~Cp~~~~~~~~~~C~~Cg~~GH~~~~C~~~~~---~-------~~~~~~C~~Cg~~gH~~~~C~~ 121 (148)
T PTZ00368 53 RSCYNCGKTGHLSRECPEAPPGSGPRSCYNCGQTGHISRECPNRAK---G-------GAARRACYNCGGEGHISRDCPN 121 (148)
T ss_pred cccCCCCCcCcCcccCCCcccCCCCcccCcCCCCCcccccCCCccc---c-------cccchhhcccCcCCcchhcCCC
Confidence 468889999998887754321 112234444433332111100000 0 1122359999999999999995
No 181
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.38 E-value=0.014 Score=64.28 Aligned_cols=91 Identities=16% Similarity=0.255 Sum_probs=72.3
Q ss_pred ccHHHH-HHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 49 TSKRTI-LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 49 ~~k~~~-l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
.-|..+ +..++.....+.++||.+||+..|.+.++.+.+ ++.+..+||+++.++|.++++.+.+|...|+|+|.
T Consensus 293 SGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~ 372 (681)
T PRK10917 293 SGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTH 372 (681)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchH
Confidence 455433 333444455667999999999999999888764 37799999999999999999999999999999997
Q ss_pred c-ccccCCCCCccEEEEe
Q 012133 123 V-AARGLDIPNVDLIIHY 139 (470)
Q Consensus 123 v-~~~Gidip~v~~VI~~ 139 (470)
. +...+.+.++.+||.-
T Consensus 373 ~ll~~~v~~~~l~lvVID 390 (681)
T PRK10917 373 ALIQDDVEFHNLGLVIID 390 (681)
T ss_pred HHhcccchhcccceEEEe
Confidence 4 4445778899988853
No 182
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=96.31 E-value=0.0014 Score=61.74 Aligned_cols=16 Identities=56% Similarity=1.479 Sum_probs=15.4
Q ss_pred cccCCCCCccCCCCCC
Q 012133 455 CFNCGKSGHRASECPN 470 (470)
Q Consensus 455 c~~c~~~gh~~~~c~~ 470 (470)
||.||++|||+.|||.
T Consensus 163 cyrcGkeghwskEcP~ 178 (346)
T KOG0109|consen 163 CYRCGKEGHWSKECPV 178 (346)
T ss_pred heeccccccccccCCc
Confidence 9999999999999995
No 183
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.28 E-value=0.022 Score=61.97 Aligned_cols=92 Identities=18% Similarity=0.275 Sum_probs=74.8
Q ss_pred cccHHHHHHHHHH-HHcCCCeEEEEeCchHHHHHHHHHHhcCC---cEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc
Q 012133 48 ATSKRTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTSII---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 123 (470)
Q Consensus 48 ~~~k~~~l~~ll~-~~~~~~~~lVF~~t~~~~~~l~~~l~~~~---~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv 123 (470)
.+.|.+++.+++. .+..++++||.++....+.++.+.|+..+ .+..+|+++++.+|.+...+.++|+.+|+|.|-.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 3467777777764 34567799999999999999999998644 5899999999999999999999999999999975
Q ss_pred ccccCCCCCccEEEEec
Q 012133 124 AARGLDIPNVDLIIHYE 140 (470)
Q Consensus 124 ~~~Gidip~v~~VI~~~ 140 (470)
+. =.-++++.+||..+
T Consensus 250 Av-FaP~~~LgLIIvdE 265 (665)
T PRK14873 250 AV-FAPVEDLGLVAIWD 265 (665)
T ss_pred eE-EeccCCCCEEEEEc
Confidence 43 34567778888544
No 184
>PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A.
Probab=96.18 E-value=0.0023 Score=40.54 Aligned_cols=15 Identities=60% Similarity=1.052 Sum_probs=11.3
Q ss_pred ccccCCCCCccCCCC
Q 012133 454 ACFNCGKSGHRASEC 468 (470)
Q Consensus 454 ~c~~c~~~gh~~~~c 468 (470)
-|++|++..|||+||
T Consensus 4 ~CprC~kg~Hwa~~C 18 (36)
T PF14787_consen 4 LCPRCGKGFHWASEC 18 (36)
T ss_dssp C-TTTSSSCS-TTT-
T ss_pred cCcccCCCcchhhhh
Confidence 399999999999999
No 185
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.05 E-value=0.023 Score=62.01 Aligned_cols=90 Identities=17% Similarity=0.271 Sum_probs=71.6
Q ss_pred ccHHHH-HHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 49 TSKRTI-LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 49 ~~k~~~-l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
.-|..+ +..++.......+++|.+||+..|.++++.+.+ ++.+..+||+++.++|..+++.+.+++..|+|+|.
T Consensus 267 SGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~ 346 (630)
T TIGR00643 267 SGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTH 346 (630)
T ss_pred CcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecH
Confidence 455433 333445555667999999999999999887764 47899999999999999999999999999999997
Q ss_pred cc-cccCCCCCccEEEE
Q 012133 123 VA-ARGLDIPNVDLIIH 138 (470)
Q Consensus 123 v~-~~Gidip~v~~VI~ 138 (470)
.. ...+.+.++.+||.
T Consensus 347 ~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 347 ALIQEKVEFKRLALVII 363 (630)
T ss_pred HHHhccccccccceEEE
Confidence 43 44577888888884
No 186
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=95.87 E-value=0.045 Score=61.61 Aligned_cols=117 Identities=18% Similarity=0.303 Sum_probs=87.0
Q ss_pred HHHHHcCCCeEEEEeCchHHHHHHHHHHhc-----------------------CCcEEEEeCCCCHHHHHHHHcccccCC
Q 012133 58 LITVYAKGGKTIVFTQTKRDADEVSLALTS-----------------------IIASEALHGDISQHQRERTLNGFRQGK 114 (470)
Q Consensus 58 ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-----------------------~~~~~~lhg~~~~~~R~~~~~~f~~g~ 114 (470)
+.+.....+++|||+++++.|..++..|-. .++..+=|-+|+..++..+-..|..|.
T Consensus 1352 i~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~ 1431 (1674)
T KOG0951|consen 1352 IVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGA 1431 (1674)
T ss_pred HHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCc
Confidence 333335668999999999999888765421 023333388999999999999999999
Q ss_pred eeEEEecccccccCCCCCccEEE-----Eec------CCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHH
Q 012133 115 FTVLVATDVAARGLDIPNVDLII-----HYE------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179 (470)
Q Consensus 115 ~~iLVaTdv~~~Gidip~v~~VI-----~~~------~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i 179 (470)
++|+|...- -.|+-... ++|| .|| .+.+.....|++|++.|+ +.|+++.....+.+++++
T Consensus 1432 i~v~v~s~~-~~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1432 IQVCVMSRD-CYGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred EEEEEEEcc-cccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHHHHh
Confidence 999988755 66766643 3344 233 355788899999999984 699999998888887765
No 187
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.86 E-value=0.033 Score=62.96 Aligned_cols=90 Identities=17% Similarity=0.225 Sum_probs=71.0
Q ss_pred ccHHHHHH-HHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 49 TSKRTILS-DLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 49 ~~k~~~l~-~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
.-|..+.. .++.......+++|.+||+..|.+.++.+.+ .+.+..+++.++..++.++++.+++|+++|||+|.
T Consensus 483 sGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp 562 (926)
T TIGR00580 483 FGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTH 562 (926)
T ss_pred ccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchH
Confidence 45554332 3344444568999999999999999988874 24678899999999999999999999999999996
Q ss_pred -cccccCCCCCccEEEE
Q 012133 123 -VAARGLDIPNVDLIIH 138 (470)
Q Consensus 123 -v~~~Gidip~v~~VI~ 138 (470)
++...+.+.++.+||.
T Consensus 563 ~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 563 KLLQKDVKFKDLGLLII 579 (926)
T ss_pred HHhhCCCCcccCCEEEe
Confidence 4555678889998885
No 188
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=95.82 E-value=0.22 Score=54.49 Aligned_cols=111 Identities=19% Similarity=0.259 Sum_probs=75.6
Q ss_pred HHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCC
Q 012133 53 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 131 (470)
Q Consensus 53 ~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip 131 (470)
.....|+..+..++++-||+.|...++.+++.... ...+..+++.-+..+ + +.+. +.+|+|-|+++..|+++.
T Consensus 270 tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~W~--~~~VviYT~~itvG~Sf~ 343 (824)
T PF02399_consen 270 TFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ESWK--KYDVVIYTPVITVGLSFE 343 (824)
T ss_pred hHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-cccc--ceeEEEEeceEEEEeccc
Confidence 44455566666778889999999998888888775 456777777655442 1 2333 689999999999999997
Q ss_pred CccE--EEEecCC----CChhHHHHHhcccCCCCCCCeEEEeeCh
Q 012133 132 NVDL--IIHYELP----NDPETFVHRSGRTGRAGKEGTAILMFTS 170 (470)
Q Consensus 132 ~v~~--VI~~~~p----~~~~~y~qr~GR~gR~g~~g~~i~l~~~ 170 (470)
+..+ |.-|=-| .+..+..|++||+-.. .....+++++.
T Consensus 344 ~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~ 387 (824)
T PF02399_consen 344 EKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDA 387 (824)
T ss_pred hhhceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEec
Confidence 5542 4433223 3566789999997544 33445554443
No 189
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=95.34 E-value=0.059 Score=52.24 Aligned_cols=10 Identities=0% Similarity=0.348 Sum_probs=4.3
Q ss_pred HHHHHHHHHh
Q 012133 174 RTVRSLERDV 183 (470)
Q Consensus 174 ~~~~~i~~~~ 183 (470)
..++.|+..+
T Consensus 165 ~lfe~i~~kl 174 (465)
T KOG3973|consen 165 KLFETIRQKL 174 (465)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 190
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=95.25 E-value=0.13 Score=55.91 Aligned_cols=70 Identities=23% Similarity=0.240 Sum_probs=53.8
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc------CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-----cccc-cCCCCC
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPN 132 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-----v~~~-Gidip~ 132 (470)
..++||.|||++.|.++++.+.. .+.+..+|++.+...+...++. ...|||+|+ .+.+ .+++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~----~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ----GPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcchhh
Confidence 45899999999999999887653 4678899999887776665543 578999995 3333 478888
Q ss_pred ccEEEE
Q 012133 133 VDLIIH 138 (470)
Q Consensus 133 v~~VI~ 138 (470)
+.+||.
T Consensus 150 l~~lVl 155 (629)
T PRK11634 150 LSGLVL 155 (629)
T ss_pred ceEEEe
Confidence 888874
No 191
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.00 E-value=0.056 Score=59.04 Aligned_cols=92 Identities=24% Similarity=0.299 Sum_probs=75.7
Q ss_pred cCcccHHHHHHHHHH-HHcCCCeEEEEeCchHHHHHHHHHHhc--CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 46 TTATSKRTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 46 ~~~~~k~~~l~~ll~-~~~~~~~~lVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
++-+.|.+++..++. .+..++++||.+|-+....++...+.. +..+.++|++|++.+|.....+.++|+.+|+|.|-
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR 304 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR 304 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEec
Confidence 455678888888775 446678999999999999999998885 46799999999999999999999999999999996
Q ss_pred cccccCCCCCccEEEE
Q 012133 123 VAARGLDIPNVDLIIH 138 (470)
Q Consensus 123 v~~~Gidip~v~~VI~ 138 (470)
.+- =.-++++-+||.
T Consensus 305 SAl-F~Pf~~LGLIIv 319 (730)
T COG1198 305 SAL-FLPFKNLGLIIV 319 (730)
T ss_pred hhh-cCchhhccEEEE
Confidence 432 344567777773
No 192
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.92 E-value=0.088 Score=60.94 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=70.0
Q ss_pred CcccHHHHHHH-HHHHHcCCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEe
Q 012133 47 TATSKRTILSD-LITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120 (470)
Q Consensus 47 ~~~~k~~~l~~-ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVa 120 (470)
...-|..+... +........++||.+||+..|.++++.+.+ .+.+..+++..+.+++.++++.++++..+|||+
T Consensus 630 TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVg 709 (1147)
T PRK10689 630 VGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIG 709 (1147)
T ss_pred CCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 33456543222 222334568999999999999999988874 246778999999999999999999999999999
Q ss_pred cc-cccccCCCCCccEEEE
Q 012133 121 TD-VAARGLDIPNVDLIIH 138 (470)
Q Consensus 121 Td-v~~~Gidip~v~~VI~ 138 (470)
|. .+...+.+.++.+||.
T Consensus 710 Tp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 710 THKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CHHHHhCCCCHhhCCEEEE
Confidence 96 4445567788888774
No 193
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=94.86 E-value=0.011 Score=53.04 Aligned_cols=15 Identities=60% Similarity=1.646 Sum_probs=14.8
Q ss_pred cccCCCCCccCCCCC
Q 012133 455 CFNCGKSGHRASECP 469 (470)
Q Consensus 455 c~~c~~~gh~~~~c~ 469 (470)
||+|||.||.++|||
T Consensus 63 C~nCg~~GH~~~DCP 77 (190)
T COG5082 63 CFNCGQNGHLRRDCP 77 (190)
T ss_pred cchhcccCcccccCC
Confidence 999999999999999
No 194
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=94.61 E-value=0.13 Score=53.32 Aligned_cols=70 Identities=16% Similarity=0.246 Sum_probs=54.2
Q ss_pred CeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc------cccccCCCCCcc
Q 012133 66 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVD 134 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd------v~~~Gidip~v~ 134 (470)
.++||.+||++.+.++++.+.. .+.+..++|+.+...+..++.. ..+|||+|+ +....+++.++.
T Consensus 74 ~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~----~~~IlV~Tp~rl~~~~~~~~~~~~~v~ 149 (434)
T PRK11192 74 PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSE----NQDIVVATPGRLLQYIKEENFDCRAVE 149 (434)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcC----CCCEEEEChHHHHHHHHcCCcCcccCC
Confidence 5899999999999998876652 4678999999988877766643 578999997 223456788888
Q ss_pred EEEEe
Q 012133 135 LIIHY 139 (470)
Q Consensus 135 ~VI~~ 139 (470)
+||.-
T Consensus 150 ~lViD 154 (434)
T PRK11192 150 TLILD 154 (434)
T ss_pred EEEEE
Confidence 88743
No 195
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.60 E-value=0.19 Score=43.59 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=34.7
Q ss_pred CCHHHHHHHHcccccCC-eeEEEecccccccCCCCCc--cEEEEecCCC
Q 012133 98 ISQHQRERTLNGFRQGK-FTVLVATDVAARGLDIPNV--DLIIHYELPN 143 (470)
Q Consensus 98 ~~~~~R~~~~~~f~~g~-~~iLVaTdv~~~Gidip~v--~~VI~~~~p~ 143 (470)
....+..++++.|++.. ..||++|.-..+|||+|+- ..||...+|.
T Consensus 31 ~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 31 EDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 44445678888888654 3799999889999999974 5688777664
No 196
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=94.56 E-value=0.13 Score=55.32 Aligned_cols=110 Identities=19% Similarity=0.262 Sum_probs=89.0
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhcC-------------------CcEEEEeCCCCHHHHHHHHcccccC---CeeEEEec
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTSI-------------------IASEALHGDISQHQRERTLNGFRQG---KFTVLVAT 121 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~~-------------------~~~~~lhg~~~~~~R~~~~~~f~~g---~~~iLVaT 121 (470)
.+.++|||.......+.|.+.|.+. ..-.-+.|..+..+|++.+++|.+. ..-+|++|
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllst 797 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLST 797 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehh
Confidence 3568999999988888887777642 1234577888999999999999863 24678999
Q ss_pred ccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhH
Q 012133 122 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 173 (470)
Q Consensus 122 dv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~ 173 (470)
.....||++-..+-+|.+|.-|++.--.|.+-|+-|.|+.-.|+++-.--+.
T Consensus 798 rag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~ 849 (1387)
T KOG1016|consen 798 RAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDN 849 (1387)
T ss_pred ccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhh
Confidence 9999999998888999999999999889999999999988888776544433
No 197
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.51 E-value=0.12 Score=57.27 Aligned_cols=60 Identities=20% Similarity=0.345 Sum_probs=51.5
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-----C-CcEEE-EeCCCCHHHHHHHHcccccCCeeEEEeccc
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-----I-IASEA-LHGDISQHQRERTLNGFRQGKFTVLVATDV 123 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-----~-~~~~~-lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv 123 (470)
+++++++.+||...+.+.++.|.+ . +.+.. +|+.|+.+++++++++|.+|..+|||+|..
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 458999999999999999988874 1 33333 999999999999999999999999999973
No 198
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=94.51 E-value=0.015 Score=52.08 Aligned_cols=54 Identities=22% Similarity=0.327 Sum_probs=32.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccCCCCCccCCCC-C
Q 012133 393 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSRSFGGACFNCGKSGHRASEC-P 469 (470)
Q Consensus 393 ~~~~~~g~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~g~~c~~c~~~gh~~~~c-~ 469 (470)
-.|+.||+.||..++|+ . .-+..|.- .++.+.-- ....-||+||+.||+++|| |
T Consensus 61 ~~C~nCg~~GH~~~DCP-~-----~iC~~C~~-----~~H~s~~C------------~~~~~C~~Cg~~GH~~~dC~P 115 (190)
T COG5082 61 PVCFNCGQNGHLRRDCP-H-----SICYNCSW-----DGHRSNHC------------PKPKKCYNCGETGHLSRDCNP 115 (190)
T ss_pred cccchhcccCcccccCC-h-----hHhhhcCC-----CCcccccC------------CcccccccccccCccccccCc
Confidence 46999999999998887 1 11222210 00110000 0112399999999999999 5
No 199
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=94.28 E-value=0.1 Score=53.75 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=42.8
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
.+...||..+|++.++++.+.-.+ ++.+..+-|+++.+++---+.. -+.|+|||+
T Consensus 321 ~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~----gceiviatP 380 (673)
T KOG0333|consen 321 EGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSM----GCEIVIATP 380 (673)
T ss_pred cCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhc----cceeeecCc
Confidence 356899999999999999876543 4678889999998876433333 579999997
No 200
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=94.15 E-value=0.2 Score=43.58 Aligned_cols=42 Identities=21% Similarity=0.376 Sum_probs=30.9
Q ss_pred HHHHHHcccccCCe---eEEEeccc--ccccCCCCCc--cEEEEecCCC
Q 012133 102 QRERTLNGFRQGKF---TVLVATDV--AARGLDIPNV--DLIIHYELPN 143 (470)
Q Consensus 102 ~R~~~~~~f~~g~~---~iLVaTdv--~~~Gidip~v--~~VI~~~~p~ 143 (470)
+..++++.|++..- .||+++.- ..+|||+|+- ..||...+|.
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 44677778876433 68888876 8999999974 5788777763
No 201
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=93.89 E-value=0.044 Score=63.98 Aligned_cols=92 Identities=22% Similarity=0.403 Sum_probs=75.9
Q ss_pred eEEEEeCchHHHHHHHHHHhc--CCcEEEEeCCCC-----------HHHHHHHHcccccCCeeEEEecccccccCCCCCc
Q 012133 67 KTIVFTQTKRDADEVSLALTS--IIASEALHGDIS-----------QHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 133 (470)
Q Consensus 67 ~~lVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~-----------~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v 133 (470)
..|+|++....+..+.+.+.+ .+.+..+.|.+. +..+.+++..|....+++|++|.++..|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 568999999999998888874 233333444322 2246789999999999999999999999999999
Q ss_pred cEEEEecCCCChhHHHHHhcccCCC
Q 012133 134 DLIIHYELPNDPETFVHRSGRTGRA 158 (470)
Q Consensus 134 ~~VI~~~~p~~~~~y~qr~GR~gR~ 158 (470)
+.|+.++.|.....|+|..||+-++
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999998554
No 202
>PRK14701 reverse gyrase; Provisional
Probab=93.83 E-value=0.19 Score=60.07 Aligned_cols=60 Identities=22% Similarity=0.316 Sum_probs=52.6
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-------CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 123 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv 123 (470)
+..++||.+||++.+.++++.|.. .+.+..+||+++..++.++++.++++..+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 456899999999999999988874 245788999999999999999999999999999974
No 203
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=93.82 E-value=0.32 Score=54.15 Aligned_cols=107 Identities=17% Similarity=0.281 Sum_probs=69.1
Q ss_pred CeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-------cccc--cCCCC
Q 012133 66 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-------VAAR--GLDIP 131 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-------v~~~--Gidip 131 (470)
.-+||.++|++.+.+|.+.+.+ .+.+++.+|+..++++...+++ | ..|+|||. ++.. =.+|-
T Consensus 439 Pi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkR---g-~eIvV~tpGRmiD~l~~n~grvtnlr 514 (997)
T KOG0334|consen 439 PIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKR---G-AEIVVCTPGRMIDILCANSGRVTNLR 514 (997)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhc---C-CceEEeccchhhhhHhhcCCcccccc
Confidence 4579999999999999988874 4778999999888877666554 5 78999996 1222 23445
Q ss_pred CccEEEE------ec--CCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHh
Q 012133 132 NVDLIIH------YE--LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 183 (470)
Q Consensus 132 ~v~~VI~------~~--~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~ 183 (470)
.|++|+. +| +-.....++|.+ |.-| -.++++.+....+..+.+..
T Consensus 515 R~t~lv~deaDrmfdmgfePq~~~Ii~nl-rpdr------QtvlfSatfpr~m~~la~~v 567 (997)
T KOG0334|consen 515 RVTYLVLDEADRMFDMGFEPQITRILQNL-RPDR------QTVLFSATFPRSMEALARKV 567 (997)
T ss_pred ccceeeechhhhhheeccCcccchHHhhc-chhh------hhhhhhhhhhHHHHHHHHHh
Confidence 5556662 22 222333377888 4444 34555555555566665554
No 204
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=93.77 E-value=0.41 Score=50.17 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=54.8
Q ss_pred CeEEEEeCchHHHHHHHHHHhc------CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-----ccc-ccCCCCCc
Q 012133 66 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAA-RGLDIPNV 133 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-----v~~-~Gidip~v 133 (470)
.++||.+||++.+.++++.+.. .+.+..++|+.+...+...++ ....|+|+|+ .+. ..+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 4799999999999999887763 367888999999887766665 3678999995 333 45788899
Q ss_pred cEEEEe
Q 012133 134 DLIIHY 139 (470)
Q Consensus 134 ~~VI~~ 139 (470)
.+||.-
T Consensus 149 ~~lViD 154 (460)
T PRK11776 149 NTLVLD 154 (460)
T ss_pred CEEEEE
Confidence 988853
No 205
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.72 E-value=0.35 Score=50.08 Aligned_cols=114 Identities=21% Similarity=0.291 Sum_probs=86.0
Q ss_pred CeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc--ccccCCCCCccEEEEecCC
Q 012133 66 GKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV--AARGLDIPNVDLIIHYELP 142 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv--~~~Gidip~v~~VI~~~~p 142 (470)
.-+|||.|+--+-..+..++.+ .+....+|--.++..-.++-+.|-.|...||+-|.- .-+-.+|..|..||.|.+|
T Consensus 553 s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP 632 (698)
T KOG2340|consen 553 SGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPP 632 (698)
T ss_pred CceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCC
Confidence 4679999999998888888875 455555665555666566677888999999999973 4567889999999999999
Q ss_pred CChhHH---HHHhcccCCCC----CCCeEEEeeChhhHHHHHHH
Q 012133 143 NDPETF---VHRSGRTGRAG----KEGTAILMFTSSQRRTVRSL 179 (470)
Q Consensus 143 ~~~~~y---~qr~GR~gR~g----~~g~~i~l~~~~~~~~~~~i 179 (470)
..+.=| +.+++|+.-.| ..-.|.++|+.-+.-.++.|
T Consensus 633 ~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 633 NNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred CCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 998766 66777765433 34578889988776554443
No 206
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=93.37 E-value=0.14 Score=53.06 Aligned_cols=52 Identities=27% Similarity=0.387 Sum_probs=47.0
Q ss_pred eEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 67 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 67 ~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
-.|||+||++.|.++.++|.. .+.+..|.|+|+...+++++.+ ...|+|||+
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 389999999999999999863 5889999999999999999988 678999998
No 207
>PF15288 zf-CCHC_6: Zinc knuckle
Probab=92.57 E-value=0.059 Score=35.40 Aligned_cols=15 Identities=53% Similarity=1.260 Sum_probs=13.9
Q ss_pred cccCCCCCccC--CCCC
Q 012133 455 CFNCGKSGHRA--SECP 469 (470)
Q Consensus 455 c~~c~~~gh~~--~~c~ 469 (470)
|-+||+.||++ +.||
T Consensus 4 C~~CG~~GH~~t~k~CP 20 (40)
T PF15288_consen 4 CKNCGAFGHMRTNKRCP 20 (40)
T ss_pred ccccccccccccCccCC
Confidence 99999999998 7788
No 208
>PTZ00110 helicase; Provisional
Probab=92.40 E-value=0.65 Score=49.80 Aligned_cols=69 Identities=13% Similarity=0.193 Sum_probs=52.3
Q ss_pred CeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-----cccc-cCCCCCcc
Q 012133 66 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPNVD 134 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-----v~~~-Gidip~v~ 134 (470)
..+||.+||++.|.++.+.+.+ .+.+..++++.+...+...+.. ...|||+|+ .+.. -+++..+.
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~----~~~IlVaTPgrL~d~l~~~~~~l~~v~ 279 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRR----GVEILIACPGRLIDFLESNVTNLRRVT 279 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHc----CCCEEEECHHHHHHHHHcCCCChhhCc
Confidence 4689999999999999888764 3668889999887766555543 478999996 3333 36778888
Q ss_pred EEEE
Q 012133 135 LIIH 138 (470)
Q Consensus 135 ~VI~ 138 (470)
+||.
T Consensus 280 ~lVi 283 (545)
T PTZ00110 280 YLVL 283 (545)
T ss_pred EEEe
Confidence 8774
No 209
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=92.37 E-value=0.53 Score=50.44 Aligned_cols=84 Identities=19% Similarity=0.300 Sum_probs=70.5
Q ss_pred HHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc-ccccC
Q 012133 55 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARGL 128 (470)
Q Consensus 55 l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv-~~~Gi 128 (470)
+..++..+..+.++.+-+||--.|++-+..+.+ ++.+..+.|.+..++|+++++...+|.++|+|.|-+ +...+
T Consensus 301 ~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V 380 (677)
T COG1200 301 LLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKV 380 (677)
T ss_pred HHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcce
Confidence 344455666778999999998888887777664 467999999999999999999999999999999964 56679
Q ss_pred CCCCccEEEE
Q 012133 129 DIPNVDLIIH 138 (470)
Q Consensus 129 dip~v~~VI~ 138 (470)
++.++-+||.
T Consensus 381 ~F~~LgLVIi 390 (677)
T COG1200 381 EFHNLGLVII 390 (677)
T ss_pred eecceeEEEE
Confidence 9999999885
No 210
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=92.31 E-value=2.1 Score=42.75 Aligned_cols=111 Identities=16% Similarity=0.255 Sum_probs=69.4
Q ss_pred CCeEEEEeCchHHHHHHHHHHhcC-----------CcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-----c-----
Q 012133 65 GGKTIVFTQTKRDADEVSLALTSI-----------IASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----V----- 123 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~~-----------~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-----v----- 123 (470)
..-.||.|++++.|.+.++.+... +.+..--|+++-.++..++++ .+.|+|||+ +
T Consensus 246 GP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~----GvHivVATPGRL~DmL~KK~ 321 (610)
T KOG0341|consen 246 GPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRR----GVHIVVATPGRLMDMLAKKI 321 (610)
T ss_pred CCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhc----CeeEEEcCcchHHHHHHHhh
Confidence 456799999999998887776532 234455689999998888876 689999997 1
Q ss_pred ----ccccCCCCCccEEEEecCCCChhHHH-HHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCc
Q 012133 124 ----AARGLDIPNVDLIIHYELPNDPETFV-HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 187 (470)
Q Consensus 124 ----~~~Gidip~v~~VI~~~~p~~~~~y~-qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~ 187 (470)
+-|-+.+...+-.|+.++-.++.+.. +-.| -...+|++..-...++.+.+..-.+.
T Consensus 322 ~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~--------QRQTLLFSATMP~KIQ~FAkSALVKP 382 (610)
T KOG0341|consen 322 MSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKG--------QRQTLLFSATMPKKIQNFAKSALVKP 382 (610)
T ss_pred ccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhh--------hhheeeeeccccHHHHHHHHhhcccc
Confidence 22334445555566666666654432 2221 13345566555555555555444333
No 211
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=92.30 E-value=0.5 Score=53.65 Aligned_cols=89 Identities=17% Similarity=0.259 Sum_probs=72.4
Q ss_pred cHHHHHH-HHHHHHcCCCeEEEEeCchHHHHHHHHHHhc---C--CcEEEEeCCCCHHHHHHHHcccccCCeeEEEec-c
Q 012133 50 SKRTILS-DLITVYAKGGKTIVFTQTKRDADEVSLALTS---I--IASEALHGDISQHQRERTLNGFRQGKFTVLVAT-D 122 (470)
Q Consensus 50 ~k~~~l~-~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~---~--~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaT-d 122 (470)
-|.++.. ...+....++++.|.+||.-.|++=++.+.+ + +.+..|.-=.+.+++.++++..++|+++|||.| .
T Consensus 627 GKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr 706 (1139)
T COG1197 627 GKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR 706 (1139)
T ss_pred cHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH
Confidence 3444333 3334445678999999999999999988875 2 457778888899999999999999999999999 6
Q ss_pred cccccCCCCCccEEEE
Q 012133 123 VAARGLDIPNVDLIIH 138 (470)
Q Consensus 123 v~~~Gidip~v~~VI~ 138 (470)
++...|-+.|+-+||.
T Consensus 707 LL~kdv~FkdLGLlII 722 (1139)
T COG1197 707 LLSKDVKFKDLGLLII 722 (1139)
T ss_pred hhCCCcEEecCCeEEE
Confidence 8888999999999885
No 212
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=92.26 E-value=1.9 Score=44.72 Aligned_cols=71 Identities=30% Similarity=0.352 Sum_probs=57.9
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc--CC---cEEEEeCCCCHHHHHHHHcccccCCeeEEEecc------cccccCCCCCc
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS--II---ASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNV 133 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~--~~---~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd------v~~~Gidip~v 133 (470)
++++|+..||+-.+.+-+..+.+ ++ .+..|.|..++++|.+.... .+|+|||+ +.+-=||+.++
T Consensus 58 ~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~-----~kVfvaTPQvveNDl~~Grid~~dv 132 (542)
T COG1111 58 GGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAK-----KKVFVATPQVVENDLKAGRIDLDDV 132 (542)
T ss_pred CCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhh-----CCEEEeccHHHHhHHhcCccChHHc
Confidence 34899999999999988888875 33 47899999999999988764 78999996 45556999999
Q ss_pred cEEEEec
Q 012133 134 DLIIHYE 140 (470)
Q Consensus 134 ~~VI~~~ 140 (470)
.++|.-.
T Consensus 133 ~~lifDE 139 (542)
T COG1111 133 SLLIFDE 139 (542)
T ss_pred eEEEech
Confidence 9988433
No 213
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=92.13 E-value=0.3 Score=56.79 Aligned_cols=59 Identities=19% Similarity=0.339 Sum_probs=50.1
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-----CCc---EEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-----IIA---SEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-----~~~---~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
...++||.+||++.+.++++.+.+ ++. +..+||+++..+|...++.++++..+|||+|+
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp 186 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTT 186 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 457899999999999999888864 223 23589999999999999999988899999997
No 214
>KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.67 E-value=0.074 Score=51.33 Aligned_cols=18 Identities=39% Similarity=1.324 Sum_probs=16.1
Q ss_pred CccccCCCCCccCCCCCC
Q 012133 453 GACFNCGKSGHRASECPN 470 (470)
Q Consensus 453 ~~c~~c~~~gh~~~~c~~ 470 (470)
.-||+||+.|||++|||+
T Consensus 144 ~~Cy~Cg~~GH~s~~C~~ 161 (261)
T KOG4400|consen 144 AKCYSCGEQGHISDDCPE 161 (261)
T ss_pred CccCCCCcCCcchhhCCC
Confidence 349999999999999993
No 215
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=91.38 E-value=0.071 Score=37.17 Aligned_cols=17 Identities=53% Similarity=1.411 Sum_probs=15.7
Q ss_pred ccccCCCCCccCCCCCC
Q 012133 454 ACFNCGKSGHRASECPN 470 (470)
Q Consensus 454 ~c~~c~~~gh~~~~c~~ 470 (470)
.||+||.-||..++||.
T Consensus 33 ~C~~C~~~gH~~~~C~k 49 (49)
T PF14392_consen 33 FCFHCGRIGHSDKECPK 49 (49)
T ss_pred hhcCCCCcCcCHhHcCC
Confidence 49999999999999984
No 216
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.00 E-value=1.7 Score=41.10 Aligned_cols=110 Identities=19% Similarity=0.257 Sum_probs=72.4
Q ss_pred eEEEEeCchHHHHHHHHHHhc------CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc------cccccCCCCCcc
Q 012133 67 KTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVD 134 (470)
Q Consensus 67 ~~lVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd------v~~~Gidip~v~ 134 (470)
.+||.|.|++.|.++.+...+ ..++.+++|+|+.+.-+++++. -..|+|+|+ +-.+.+++.+|.
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~lk~vk 187 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLNLKNVK 187 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCchhhcc
Confidence 689999999999999876653 3578999999999888888776 568999998 456778888888
Q ss_pred EEEEecCCC-----ChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHh
Q 012133 135 LIIHYELPN-----DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 183 (470)
Q Consensus 135 ~VI~~~~p~-----~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~ 183 (470)
+.|.-...+ +...-+|.+=|.-- ..+.+.+++..-...++-+.+..
T Consensus 188 hFvlDEcdkmle~lDMrRDvQEifr~tp---~~KQvmmfsatlskeiRpvC~kF 238 (387)
T KOG0329|consen 188 HFVLDECDKMLEQLDMRRDVQEIFRMTP---HEKQVMMFSATLSKEIRPVCHKF 238 (387)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHhhcCc---ccceeeeeeeecchhhHHHHHhh
Confidence 876433222 22223555555422 23344444443333444444443
No 217
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=90.99 E-value=1.2 Score=46.20 Aligned_cols=69 Identities=9% Similarity=0.196 Sum_probs=52.1
Q ss_pred CeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc------cccccCCCCCcc
Q 012133 66 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVD 134 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd------v~~~Gidip~v~ 134 (470)
.++||.+||++.|.++++.+.. .+.+..++|+.+...+...++. ..+|||+|+ +-..-+++.++.
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~----~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLES----GVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcC----CCCEEEECHHHHHHHHHcCCccccccc
Confidence 5799999999999998776542 4678889999877666555542 578999997 123457888899
Q ss_pred EEEE
Q 012133 135 LIIH 138 (470)
Q Consensus 135 ~VI~ 138 (470)
+||.
T Consensus 160 ~lVi 163 (423)
T PRK04837 160 VVVL 163 (423)
T ss_pred EEEE
Confidence 8884
No 218
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.67 E-value=0.054 Score=58.83 Aligned_cols=119 Identities=16% Similarity=0.202 Sum_probs=93.5
Q ss_pred cccHHHHHHHHHHHHc-CC-CeEEEEeCchHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHcccccCC-ee-EEEecc
Q 012133 48 ATSKRTILSDLITVYA-KG-GKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK-FT-VLVATD 122 (470)
Q Consensus 48 ~~~k~~~l~~ll~~~~-~~-~~~lVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~f~~g~-~~-iLVaTd 122 (470)
...|+..+..+|.... .. .++|||+.-..-+..+...|. ..+....+-|.|+..+|.+++..|..+. .+ .|++..
T Consensus 520 ~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slk 599 (674)
T KOG1001|consen 520 ESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLK 599 (674)
T ss_pred hhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHH
Confidence 3455555555554321 11 499999999888888777776 3667778889999999999999999643 33 457788
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEE
Q 012133 123 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 166 (470)
Q Consensus 123 v~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~ 166 (470)
+...|+++-...+|+..|+-|++..-.|.+-|+.|.|+.-.+.+
T Consensus 600 ag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 600 AGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred HhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999999999999999999999999986655544
No 219
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=90.21 E-value=2.3 Score=38.75 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=50.6
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc-----c-cccCCCCCc
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----A-ARGLDIPNV 133 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv-----~-~~Gidip~v 133 (470)
..++||.+++++.+.+.+..+.. .+.+..+|++.+..+....++ ....|+|+|.. + ..-.+++++
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~l 144 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSKV 144 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhhC
Confidence 45899999999999988877653 356788999988876655554 45789999952 2 222566777
Q ss_pred cEEEE
Q 012133 134 DLIIH 138 (470)
Q Consensus 134 ~~VI~ 138 (470)
+++|.
T Consensus 145 ~~lIv 149 (203)
T cd00268 145 KYLVL 149 (203)
T ss_pred CEEEE
Confidence 77764
No 220
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.08 E-value=1.1 Score=47.17 Aligned_cols=75 Identities=23% Similarity=0.315 Sum_probs=59.9
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccc-ccc------C-CCCCcc
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-ARG------L-DIPNVD 134 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~-~~G------i-dip~v~ 134 (470)
..+.+||.+|+++.+.+....|.. ++.+..+++..+..++..++..+..+..+||++|+-. ... + ....+.
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~ 129 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGIT 129 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcC
Confidence 457899999999999888887774 7889999999999999999999999999999999732 111 2 445677
Q ss_pred EEEE
Q 012133 135 LIIH 138 (470)
Q Consensus 135 ~VI~ 138 (470)
+||.
T Consensus 130 ~iVi 133 (470)
T TIGR00614 130 LIAV 133 (470)
T ss_pred EEEE
Confidence 7663
No 221
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=88.83 E-value=4.3 Score=38.53 Aligned_cols=88 Identities=15% Similarity=0.212 Sum_probs=66.4
Q ss_pred CCcEEEEeCCCCHHHHHHHHcccccCC----eeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccC-CCCCCC
Q 012133 88 IIASEALHGDISQHQRERTLNGFRQGK----FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG-RAGKEG 162 (470)
Q Consensus 88 ~~~~~~lhg~~~~~~R~~~~~~f~~g~----~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~g-R~g~~g 162 (470)
.+.+..++++-+... -.+.++. ..|+|.=+.++||+.++.+.......-+...+++.||.=--| |.|-..
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 488999998765543 3444443 889999999999999999998888888888999999864444 555567
Q ss_pred eEEEeeChhhHHHHHHHH
Q 012133 163 TAILMFTSSQRRTVRSLE 180 (470)
Q Consensus 163 ~~i~l~~~~~~~~~~~i~ 180 (470)
.|-++.++.-...+..|.
T Consensus 185 l~Ri~~~~~l~~~f~~i~ 202 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIA 202 (239)
T ss_pred ceEEecCHHHHHHHHHHH
Confidence 888888776666665554
No 222
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.62 E-value=0.18 Score=47.89 Aligned_cols=17 Identities=41% Similarity=1.324 Sum_probs=15.6
Q ss_pred ccccCCCCCccCCCCCC
Q 012133 454 ACFNCGKSGHRASECPN 470 (470)
Q Consensus 454 ~c~~c~~~gh~~~~c~~ 470 (470)
-||+||+.|||-..||.
T Consensus 178 ~CyRCGqkgHwIqnCpT 194 (427)
T COG5222 178 VCYRCGQKGHWIQNCPT 194 (427)
T ss_pred eEEecCCCCchhhcCCC
Confidence 39999999999999983
No 223
>PRK13766 Hef nuclease; Provisional
Probab=88.18 E-value=5.4 Score=44.79 Aligned_cols=73 Identities=25% Similarity=0.352 Sum_probs=55.1
Q ss_pred cCCCeEEEEeCchHHHHHHHHHHhcC-----CcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc------ccccCCCC
Q 012133 63 AKGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIP 131 (470)
Q Consensus 63 ~~~~~~lVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv------~~~Gidip 131 (470)
...+++||.+||+..+++.++.+.+. ..+..++|+.+..+|.+.... ..|+|+|+- ...-+++.
T Consensus 56 ~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~-----~~iiv~T~~~l~~~l~~~~~~~~ 130 (773)
T PRK13766 56 KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEK-----AKVIVATPQVIENDLIAGRISLE 130 (773)
T ss_pred hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhC-----CCEEEECHHHHHHHHHcCCCChh
Confidence 35689999999999998888877642 267889999999988776653 579999962 23446777
Q ss_pred CccEEEEec
Q 012133 132 NVDLIIHYE 140 (470)
Q Consensus 132 ~v~~VI~~~ 140 (470)
++++||.-+
T Consensus 131 ~~~liVvDE 139 (773)
T PRK13766 131 DVSLLIFDE 139 (773)
T ss_pred hCcEEEEEC
Confidence 888888543
No 224
>KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.13 E-value=0.38 Score=46.37 Aligned_cols=16 Identities=56% Similarity=1.545 Sum_probs=14.3
Q ss_pred cccCCCCCccCCCCCC
Q 012133 455 CFNCGKSGHRASECPN 470 (470)
Q Consensus 455 c~~c~~~gh~~~~c~~ 470 (470)
||.|++.+|.++|||+
T Consensus 167 c~~c~~~~h~~~~C~~ 182 (261)
T KOG4400|consen 167 CFRCGKVGHGSRDCPS 182 (261)
T ss_pred cccCCCcceecccCCc
Confidence 9999999999999984
No 225
>PRK09401 reverse gyrase; Reviewed
Probab=87.88 E-value=1.4 Score=51.36 Aligned_cols=92 Identities=21% Similarity=0.284 Sum_probs=61.2
Q ss_pred EcCcccHHHHHHHHHH-HHcCCCeEEEEeCchHHHHHHHHHHhc-----CCcEE--EEeCCCCHHHHHHHHcccccCCee
Q 012133 45 STTATSKRTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTS-----IIASE--ALHGDISQHQRERTLNGFRQGKFT 116 (470)
Q Consensus 45 ~~~~~~k~~~l~~ll~-~~~~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~--~lhg~~~~~~R~~~~~~f~~g~~~ 116 (470)
.....-|...+.-++. ...+..++||.+||++.+.++++.+.. .+.+. ..|+.++.+++.+.++.++.+..+
T Consensus 102 ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~ 181 (1176)
T PRK09401 102 APTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFD 181 (1176)
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCC
Confidence 3344456543222222 223467999999999999999998874 23333 345667788888888888888899
Q ss_pred EEEecc-----cccccCCCCCccEEE
Q 012133 117 VLVATD-----VAARGLDIPNVDLII 137 (470)
Q Consensus 117 iLVaTd-----v~~~Gidip~v~~VI 137 (470)
|+|+|+ .+. .+....+++||
T Consensus 182 IlV~Tp~rL~~~~~-~l~~~~~~~lV 206 (1176)
T PRK09401 182 ILVTTSQFLSKNFD-ELPKKKFDFVF 206 (1176)
T ss_pred EEEECHHHHHHHHH-hccccccCEEE
Confidence 999995 222 34444577766
No 226
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=87.88 E-value=2.6 Score=44.31 Aligned_cols=70 Identities=11% Similarity=0.190 Sum_probs=51.2
Q ss_pred CeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc------ccccCCCCCcc
Q 012133 66 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNVD 134 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv------~~~Gidip~v~ 134 (470)
.++||.++|++.+.++++.+.. .+.+..++|+.+...+.+.+ .....+|||+|+- ....+.+.++.
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~---~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~ 239 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQL---EARFCDILVATPGRLLDFNQRGEVHLDMVE 239 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHH---hCCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 5899999999999998887763 36788899988766544333 3456789999972 23356677788
Q ss_pred EEEE
Q 012133 135 LIIH 138 (470)
Q Consensus 135 ~VI~ 138 (470)
+||.
T Consensus 240 ~lVi 243 (475)
T PRK01297 240 VMVL 243 (475)
T ss_pred eEEe
Confidence 8774
No 227
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=87.56 E-value=4.5 Score=35.35 Aligned_cols=86 Identities=17% Similarity=0.246 Sum_probs=56.2
Q ss_pred ccHHHHHH-HHHHHHcC--CCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHH-HHHHHHcccccCCeeEEE
Q 012133 49 TSKRTILS-DLITVYAK--GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQH-QRERTLNGFRQGKFTVLV 119 (470)
Q Consensus 49 ~~k~~~l~-~ll~~~~~--~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~-~R~~~~~~f~~g~~~iLV 119 (470)
.-|..... .++..+.+ ..++||.+|+++.++++.+.+.+ .+.+..+|++.+.. +....+ .+...|||
T Consensus 25 sGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv 100 (169)
T PF00270_consen 25 SGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILV 100 (169)
T ss_dssp SSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEE
T ss_pred CccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccccccccccccccc----cccccccc
Confidence 45654433 33333322 35999999999999999988874 25788999998855 444444 44689999
Q ss_pred eccc------ccccCCCCCccEEEE
Q 012133 120 ATDV------AARGLDIPNVDLIIH 138 (470)
Q Consensus 120 aTdv------~~~Gidip~v~~VI~ 138 (470)
+|.. ....+++..+++||.
T Consensus 101 ~T~~~l~~~~~~~~~~~~~~~~iVi 125 (169)
T PF00270_consen 101 TTPEQLLDLISNGKINISRLSLIVI 125 (169)
T ss_dssp EEHHHHHHHHHTTSSTGTTESEEEE
T ss_pred cCcchhhccccccccccccceeecc
Confidence 9962 222345566666663
No 228
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=87.18 E-value=2.3 Score=46.08 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=58.9
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccccc------ccCCCCCccEE
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA------RGLDIPNVDLI 136 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~------~Gidip~v~~V 136 (470)
..+.+||.+|++..+.+....|.. ++.+..+|+.++..++..+++....+..+||+.|+-.- .-+...++.+|
T Consensus 52 ~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~i 131 (591)
T TIGR01389 52 LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALV 131 (591)
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEE
Confidence 457899999999998887777764 78899999999999999999999999999999886321 12334456666
Q ss_pred E
Q 012133 137 I 137 (470)
Q Consensus 137 I 137 (470)
|
T Consensus 132 V 132 (591)
T TIGR01389 132 A 132 (591)
T ss_pred E
Confidence 6
No 229
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=86.85 E-value=4.6 Score=45.04 Aligned_cols=70 Identities=13% Similarity=0.199 Sum_probs=51.6
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-cccccC---------C
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-VAARGL---------D 129 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-v~~~Gi---------d 129 (470)
+..++||.+||++.+.++...|.. .+.+..++|+.+..+|..+.+ ..+|||+|+ .+..++ .
T Consensus 80 ~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~-----~~~IivtTPd~L~~~~L~~~~~~~~~ 154 (742)
T TIGR03817 80 PRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWARE-----HARYVLTNPDMLHRGILPSHARWARF 154 (742)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHhc-----CCCEEEEChHHHHHhhccchhHHHHH
Confidence 346899999999999999988874 367888999999888754433 368999995 332221 2
Q ss_pred CCCccEEEE
Q 012133 130 IPNVDLIIH 138 (470)
Q Consensus 130 ip~v~~VI~ 138 (470)
+.++.+||.
T Consensus 155 l~~l~~vVi 163 (742)
T TIGR03817 155 LRRLRYVVI 163 (742)
T ss_pred HhcCCEEEE
Confidence 567888874
No 230
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=86.22 E-value=2.7 Score=48.29 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=50.5
Q ss_pred CCCeEEEEeCchHHHH-HHHHHHhcCCcEEEEeCCCCHHHHHHHHccccc--CCeeEEEecc
Q 012133 64 KGGKTIVFTQTKRDAD-EVSLALTSIIASEALHGDISQHQRERTLNGFRQ--GKFTVLVATD 122 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~-~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~f~~--g~~~iLVaTd 122 (470)
..+.+||.+|+++.+. ++..++..++.+..+.+.++..++..+++.+.. +.++||++|+
T Consensus 499 ~~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTP 560 (1195)
T PLN03137 499 CPGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTP 560 (1195)
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEECh
Confidence 3578999999999986 555555568999999999999999999998876 8899999997
No 231
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=85.97 E-value=0.95 Score=49.16 Aligned_cols=53 Identities=23% Similarity=0.415 Sum_probs=45.7
Q ss_pred cccccCCeeEEEecccccccCCCCCccEEE--------EecCCCChhHHHHHhcccCCCCC
Q 012133 108 NGFRQGKFTVLVATDVAARGLDIPNVDLII--------HYELPNDPETFVHRSGRTGRAGK 160 (470)
Q Consensus 108 ~~f~~g~~~iLVaTdv~~~Gidip~v~~VI--------~~~~p~~~~~y~qr~GR~gR~g~ 160 (470)
++|.+|+-.|-|-+.++..||.++.-.-|+ -..+||+.+.-||..|||.|.++
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQ 911 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQ 911 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccc
Confidence 578889988999999999999997665554 47899999999999999999873
No 232
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=85.77 E-value=2.5 Score=50.30 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=54.0
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc-----------------CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc----
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS-----------------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV---- 123 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~-----------------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv---- 123 (470)
..++|+.+|+++.+.++.+.|+. .+.+..+||+.++.+|.+.++. ...|||+|+-
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~----ppdILVTTPEsL~~ 112 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRN----PPDILITTPESLYL 112 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcC----CCCEEEecHHHHHH
Confidence 35899999999999988877641 3568899999999999877654 5789999972
Q ss_pred -cc-cc-CCCCCccEEEE
Q 012133 124 -AA-RG-LDIPNVDLIIH 138 (470)
Q Consensus 124 -~~-~G-idip~v~~VI~ 138 (470)
+. +. ..+.+|++||.
T Consensus 113 LLtsk~r~~L~~Vr~VIV 130 (1490)
T PRK09751 113 MLTSRARETLRGVETVII 130 (1490)
T ss_pred HHhhhhhhhhccCCEEEE
Confidence 22 22 35788999885
No 233
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=84.77 E-value=3.6 Score=43.16 Aligned_cols=109 Identities=14% Similarity=0.183 Sum_probs=67.7
Q ss_pred eEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-----c--ccccCCCCCcc
Q 012133 67 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----V--AARGLDIPNVD 134 (470)
Q Consensus 67 ~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-----v--~~~Gidip~v~ 134 (470)
-+||..||++.|.++.+.|.+ .+.+-.+-|+..-+. +.-|-..++|||||+ - -.-.++-+++.
T Consensus 143 GalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~-----E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQ 217 (758)
T KOG0343|consen 143 GALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKF-----ELERISQMNILVCTPGRLLQHMDENPNFSTSNLQ 217 (758)
T ss_pred eeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHH-----HHHhhhcCCeEEechHHHHHHhhhcCCCCCCcce
Confidence 689999999999999999974 377878888865432 222224689999998 1 23345556666
Q ss_pred EEEE--------ecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCc
Q 012133 135 LIIH--------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 187 (470)
Q Consensus 135 ~VI~--------~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~ 187 (470)
++|. +++-...+..+--+ .+-...+|++......++.|.+..-.++
T Consensus 218 mLvLDEADR~LDMGFk~tL~~Ii~~l-------P~~RQTLLFSATqt~svkdLaRLsL~dP 271 (758)
T KOG0343|consen 218 MLVLDEADRMLDMGFKKTLNAIIENL-------PKKRQTLLFSATQTKSVKDLARLSLKDP 271 (758)
T ss_pred EEEeccHHHHHHHhHHHHHHHHHHhC-------ChhheeeeeecccchhHHHHHHhhcCCC
Confidence 6663 22222333333222 1234466677666677777776644443
No 234
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=84.42 E-value=4.4 Score=44.11 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=52.0
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
..+.+||.+|+++.+.+....|.. ++.+..+++.++..++..+++..+.+.+++|++|+
T Consensus 64 ~~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 64 LDGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred cCCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 457899999999999988888774 68899999999999999999999999999999985
No 235
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=84.11 E-value=27 Score=30.24 Aligned_cols=70 Identities=11% Similarity=-0.016 Sum_probs=39.6
Q ss_pred CCeEEEEEeeCCccccCCcchhhHHhHhhhhcCcCcCccccEEEeecC----ccceeEeec-CHHHHHHHHhhcCC---C
Q 012133 261 QGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADD----RVQGAVFDL-PEEIAKELLNKQIP---P 332 (470)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~Ig~I~i~~~~----~~~ga~fdv-~~~~a~~i~~~~~~---~ 332 (470)
....+|+|..- ...++..+|..++.... .|..+.+..+. ....+|++. ..+.|+.+++.... .
T Consensus 32 ~~~~~lfVgnL----~~~~te~~L~~~F~~~G-----~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~ 102 (144)
T PLN03134 32 LMSTKLFIGGL----SWGTDDASLRDAFAHFG-----DVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN 102 (144)
T ss_pred CCCCEEEEeCC----CCCCCHHHHHHHHhcCC-----CeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 33456777533 23578888888876543 36666666442 134577777 45666666654322 3
Q ss_pred CCeEEEe
Q 012133 333 GNTISKI 339 (470)
Q Consensus 333 g~~i~~~ 339 (470)
+..+.+-
T Consensus 103 Gr~l~V~ 109 (144)
T PLN03134 103 GRHIRVN 109 (144)
T ss_pred CEEEEEE
Confidence 4444443
No 236
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=83.78 E-value=6 Score=40.73 Aligned_cols=106 Identities=19% Similarity=0.346 Sum_probs=68.1
Q ss_pred eEEEEeCchHHHHHHHHHHhc------CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-----cccc---cCCCCC
Q 012133 67 KTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR---GLDIPN 132 (470)
Q Consensus 67 ~~lVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-----v~~~---Gidip~ 132 (470)
-+||..||++.+.+|.+.+.. .+.+..+-|+.+.++ -++.|++...+|||+|+ ++.+ .+|+..
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~---Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEE---DIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHH---HHHHHHHhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 579999999999988776652 367888889966654 45667777889999997 3333 566667
Q ss_pred ccEEEE--------ecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHH
Q 012133 133 VDLIIH--------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 182 (470)
Q Consensus 133 v~~VI~--------~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~ 182 (470)
+.++|. +++-.+..+.+-+.-+--|.| |++.........|.+.
T Consensus 158 Le~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTG-------LFSATq~~~v~dL~ra 208 (567)
T KOG0345|consen 158 LEILVLDEADRLLDMGFEASVNTILSFLPKQRRTG-------LFSATQTQEVEDLARA 208 (567)
T ss_pred cceEEecchHhHhcccHHHHHHHHHHhcccccccc-------cccchhhHHHHHHHHh
Confidence 777773 334445555555555444433 3444444444444443
No 237
>PRK13767 ATP-dependent helicase; Provisional
Probab=83.68 E-value=3.5 Score=46.89 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=49.9
Q ss_pred CeEEEEeCchHHHHHHHHHHhc-----------------CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccc-c--
Q 012133 66 GKTIVFTQTKRDADEVSLALTS-----------------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-A-- 125 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~-----------------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~-~-- 125 (470)
.++|+.+|+++.+.++++.|.. .+.+...||+.++.++.+.++. ...|||+|+-. .
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~----~p~IlVtTPE~L~~l 160 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKK----PPHILITTPESLAIL 160 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhC----CCCEEEecHHHHHHH
Confidence 4699999999999887664321 3467889999999998877764 56899999721 1
Q ss_pred ---cc--CCCCCccEEEE
Q 012133 126 ---RG--LDIPNVDLIIH 138 (470)
Q Consensus 126 ---~G--idip~v~~VI~ 138 (470)
.. -.+.++.+||.
T Consensus 161 l~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 161 LNSPKFREKLRTVKWVIV 178 (876)
T ss_pred hcChhHHHHHhcCCEEEE
Confidence 11 13567888874
No 238
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=83.43 E-value=5.6 Score=42.39 Aligned_cols=70 Identities=16% Similarity=0.204 Sum_probs=48.2
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-----cc-cccCCCCCc
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VA-ARGLDIPNV 133 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-----v~-~~Gidip~v 133 (470)
..++||.+||++.|.++.+.+.. .+.+..+.++.+..++...+. . ...|||+|+ .+ ...+++.++
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~---~-~~~IiV~TPgrL~~~l~~~~~~l~~v 271 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQ---Q-GVELIVGTPGRLIDLLSKHDIELDNV 271 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCccchhe
Confidence 45899999999999888776652 245666777665554433332 2 468999995 33 346778888
Q ss_pred cEEEE
Q 012133 134 DLIIH 138 (470)
Q Consensus 134 ~~VI~ 138 (470)
.+||.
T Consensus 272 ~~lVi 276 (518)
T PLN00206 272 SVLVL 276 (518)
T ss_pred eEEEe
Confidence 88774
No 239
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=83.16 E-value=1.2 Score=39.48 Aligned_cols=16 Identities=38% Similarity=1.259 Sum_probs=14.5
Q ss_pred cccCCCCCccCCCCCC
Q 012133 455 CFNCGKSGHRASECPN 470 (470)
Q Consensus 455 c~~c~~~gh~~~~c~~ 470 (470)
|++||+.||+.+.|-+
T Consensus 103 ~~r~G~rg~~~r~~~~ 118 (195)
T KOG0107|consen 103 CYRCGERGHIGRNCKD 118 (195)
T ss_pred cccCCCcccccccccc
Confidence 9999999999999953
No 240
>KOG4284 consensus DEAD box protein [Transcription]
Probab=81.35 E-value=13 Score=39.98 Aligned_cols=69 Identities=13% Similarity=0.187 Sum_probs=51.1
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc------CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc------cccccCCCCC
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPN 132 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd------v~~~Gidip~ 132 (470)
..+.+|.++|++-+.++.+.+.+ ++.|.++-|+.+-+.-..-+ .+.+|+|.|+ +--+-+|+..
T Consensus 93 ~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-----k~~rIvIGtPGRi~qL~el~~~n~s~ 167 (980)
T KOG4284|consen 93 HIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-----KQTRIVIGTPGRIAQLVELGAMNMSH 167 (980)
T ss_pred cceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh-----hhceEEecCchHHHHHHHhcCCCccc
Confidence 45789999999999999887763 46788888987665433333 3577999998 3344578888
Q ss_pred ccEEEE
Q 012133 133 VDLIIH 138 (470)
Q Consensus 133 v~~VI~ 138 (470)
|++.|.
T Consensus 168 vrlfVL 173 (980)
T KOG4284|consen 168 VRLFVL 173 (980)
T ss_pred eeEEEe
Confidence 888774
No 241
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=80.81 E-value=2.4 Score=48.50 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=71.3
Q ss_pred cCCCeEEEEeCchHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecC
Q 012133 63 AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 141 (470)
Q Consensus 63 ~~~~~~lVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~ 141 (470)
....++|||+.-....+.+...+. +.+..... +. -++-...+..|++ --..|+-+...+.|+++-+..||++.++
T Consensus 1219 ~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~-~~--t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~eP 1294 (1394)
T KOG0298|consen 1219 NEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLD-GE--TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEP 1294 (1394)
T ss_pred CcCceEEEEEehHHHHHHHHHHHHhhhhHhhhc-cC--Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheecc
Confidence 445799999987766666655554 23322211 11 2344556677776 3345677888999999999999999999
Q ss_pred CCChhHHHHHhcccCCCCCCCeEEE
Q 012133 142 PNDPETFVHRSGRTGRAGKEGTAIL 166 (470)
Q Consensus 142 p~~~~~y~qr~GR~gR~g~~g~~i~ 166 (470)
-.++..-.|.+||..|.|++-..++
T Consensus 1295 iLN~~~E~QAigRvhRiGQ~~pT~V 1319 (1394)
T KOG0298|consen 1295 ILNPGDEAQAIGRVHRIGQKRPTFV 1319 (1394)
T ss_pred ccCchHHHhhhhhhhhcccccchhh
Confidence 9999999999999999996654433
No 242
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=80.37 E-value=4.7 Score=41.81 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=52.7
Q ss_pred CeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHH-HHHHHHcccccCCeeEEEecc-------cccccCCCCC
Q 012133 66 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQH-QRERTLNGFRQGKFTVLVATD-------VAARGLDIPN 132 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~-~R~~~~~~f~~g~~~iLVaTd-------v~~~Gidip~ 132 (470)
=++||.++|+..+.+++..+.. ++.|..+.|.-+-+ +..+....-....++|||+|+ -...++|+..
T Consensus 216 LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~ 295 (620)
T KOG0350|consen 216 LRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKH 295 (620)
T ss_pred eEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhh
Confidence 4899999999999999998874 35566666654433 334444555556789999998 2367888888
Q ss_pred ccEEEE
Q 012133 133 VDLIIH 138 (470)
Q Consensus 133 v~~VI~ 138 (470)
+.++|.
T Consensus 296 LrfLVI 301 (620)
T KOG0350|consen 296 LRFLVI 301 (620)
T ss_pred ceEEEe
Confidence 887663
No 243
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=80.30 E-value=5.9 Score=30.92 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=32.2
Q ss_pred HHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCC
Q 012133 57 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 99 (470)
Q Consensus 57 ~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~ 99 (470)
..+..+....++++||.+-..+...+..|+. ++.+..|.|+++
T Consensus 43 ~~~~~~~~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 43 DRLNELPKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred HHHHhcCCCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 3334445667999999987778888888874 568888999874
No 244
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=79.59 E-value=23 Score=35.68 Aligned_cols=56 Identities=16% Similarity=0.109 Sum_probs=30.5
Q ss_pred EEEEEeeCCccccCCcchhhHHhHhhhhcCcCcCccccEEEeecCc----cceeEeec-CHHHHHHHHhh
Q 012133 264 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDR----VQGAVFDL-PEEIAKELLNK 328 (470)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~Ig~I~i~~~~~----~~ga~fdv-~~~~a~~i~~~ 328 (470)
++|+|..- ...++..+|..++..+.. |..++|..+.. +..+|++. ..+.|++.++.
T Consensus 194 ~~lfV~nL----p~~vtee~L~~~F~~fG~-----V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 254 (346)
T TIGR01659 194 TNLYVTNL----PRTITDDQLDTIFGKYGQ-----IVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISA 254 (346)
T ss_pred ceeEEeCC----CCcccHHHHHHHHHhcCC-----EEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 45666433 234677788777765443 55566654421 12366666 34555555554
No 245
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=79.46 E-value=10 Score=38.53 Aligned_cols=70 Identities=17% Similarity=0.224 Sum_probs=50.0
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc------cccccCCCCCc
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNV 133 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd------v~~~Gidip~v 133 (470)
+-+++|..+|++.+.+.-+.+.. .+.+..+.|+-+.+++-..+.. ..+|+|||+ .++.-+++..|
T Consensus 90 g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~----npDii~ATpgr~~h~~vem~l~l~sv 165 (529)
T KOG0337|consen 90 GLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNE----NPDIIIATPGRLLHLGVEMTLTLSSV 165 (529)
T ss_pred ccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhcc----CCCEEEecCceeeeeehheeccccce
Confidence 34999999999998887776653 2456656666555555544432 568999998 45666888899
Q ss_pred cEEEE
Q 012133 134 DLIIH 138 (470)
Q Consensus 134 ~~VI~ 138 (470)
.+||.
T Consensus 166 eyVVf 170 (529)
T KOG0337|consen 166 EYVVF 170 (529)
T ss_pred eeeee
Confidence 99984
No 246
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=78.49 E-value=3.6 Score=40.81 Aligned_cols=52 Identities=19% Similarity=0.207 Sum_probs=43.8
Q ss_pred eEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 67 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 67 ~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
-++||+||++.+.++++.+.- .+.+.++.|+++.-.+...+.+ +..|+|+|+
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~----rPHvVvatP 133 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSD----RPHVVVATP 133 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhccc----CCCeEecCc
Confidence 589999999999999998862 4789999999988777766655 678999997
No 247
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=77.78 E-value=6.6 Score=41.11 Aligned_cols=84 Identities=10% Similarity=0.239 Sum_probs=53.2
Q ss_pred CeEEEEeCchHHHHHHHHHHhcC-------CcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-------cccccCCCC
Q 012133 66 GKTIVFTQTKRDADEVSLALTSI-------IASEALHGDISQHQRERTLNGFRQGKFTVLVATD-------VAARGLDIP 131 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~~-------~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-------v~~~Gidip 131 (470)
.-+||.++|++.|.++++.+++- +++..+-|.--..++. ++|. -++|||+|+ --...|++.
T Consensus 212 ~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKA----RLRK-GiNILIgTPGRLvDHLknT~~i~~s 286 (708)
T KOG0348|consen 212 PYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKA----RLRK-GINILIGTPGRLVDHLKNTKSIKFS 286 (708)
T ss_pred ceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHH----HHhc-CceEEEcCchHHHHHHhccchheee
Confidence 46899999999999999888752 2333444443333332 2333 489999998 234567778
Q ss_pred CccEEEE--------ecCCCChhHHHHHhcc
Q 012133 132 NVDLIIH--------YELPNDPETFVHRSGR 154 (470)
Q Consensus 132 ~v~~VI~--------~~~p~~~~~y~qr~GR 154 (470)
.+.+||. .++-.++..++..++-
T Consensus 287 ~LRwlVlDEaDrlleLGfekdit~Il~~v~~ 317 (708)
T KOG0348|consen 287 RLRWLVLDEADRLLELGFEKDITQILKAVHS 317 (708)
T ss_pred eeeEEEecchhHHHhccchhhHHHHHHHHhh
Confidence 8888873 3344555555555543
No 248
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=77.05 E-value=14 Score=38.25 Aligned_cols=108 Identities=17% Similarity=0.223 Sum_probs=63.4
Q ss_pred CeEEEEeCchHHHHHHHHHHhc------CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc-----cc--cc-----
Q 012133 66 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA--RG----- 127 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv-----~~--~G----- 127 (470)
-.+||.|+|++.|-+++..++. .+.+..+-|+-... .-.++... .++|||||+= +. .|
T Consensus 155 ~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~---~e~~kl~k-~~niliATPGRLlDHlqNt~~f~~r~ 230 (543)
T KOG0342|consen 155 TGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFS---VEADKLVK-GCNILIATPGRLLDHLQNTSGFLFRN 230 (543)
T ss_pred eeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccch---HHHHHhhc-cccEEEeCCchHHhHhhcCCcchhhc
Confidence 4799999999999888766552 34566665654322 22223333 6899999981 11 11
Q ss_pred ---CCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhC
Q 012133 128 ---LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 184 (470)
Q Consensus 128 ---idip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~ 184 (470)
+=+...+.+...+++.+++..+--..+. ...++++......++.+.+..-
T Consensus 231 ~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~-------rqt~LFSAT~~~kV~~l~~~~L 283 (543)
T KOG0342|consen 231 LKCLVLDEADRLLDIGFEEDVEQIIKILPKQ-------RQTLLFSATQPSKVKDLARGAL 283 (543)
T ss_pred cceeEeecchhhhhcccHHHHHHHHHhcccc-------ceeeEeeCCCcHHHHHHHHHhh
Confidence 1122333444566777777776666532 3455666666666666666543
No 249
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=76.82 E-value=13 Score=41.19 Aligned_cols=62 Identities=13% Similarity=0.110 Sum_probs=48.9
Q ss_pred HHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc
Q 012133 55 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 123 (470)
Q Consensus 55 l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv 123 (470)
|..++..+ .+..++|.++|...|.+.++.+.+ ++.+..+.++++.++|...+. .+|+++|+.
T Consensus 88 lpa~l~aL-~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~------~dIvyGT~~ 154 (745)
T TIGR00963 88 LPAYLNAL-TGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYA------CDITYGTNN 154 (745)
T ss_pred HHHHHHHH-hCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcC------CCEEEECCC
Confidence 33334554 456899999999999999988764 477999999999988877764 589999985
No 250
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=75.57 E-value=17 Score=34.62 Aligned_cols=69 Identities=14% Similarity=0.213 Sum_probs=44.6
Q ss_pred HcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhcC
Q 012133 18 YLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI 88 (470)
Q Consensus 18 ~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~ 88 (470)
.+.|.+.+.+..-.+......+....+ .-.+-.++|.++.+.+.+++.+++|++|.++++++.+.|++.
T Consensus 143 ~l~d~v~~~~~Dv~~~~~~~~vDav~L--Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~ 211 (256)
T COG2519 143 GLGDRVTLKLGDVREGIDEEDVDAVFL--DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRER 211 (256)
T ss_pred ccccceEEEeccccccccccccCEEEE--cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc
Confidence 344554444322222222233444433 334566677777777788899999999999999999999863
No 251
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=74.97 E-value=6.9 Score=31.16 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=31.9
Q ss_pred HHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCC
Q 012133 58 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 99 (470)
Q Consensus 58 ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~ 99 (470)
.+..+.++.+++|+|.+-..+...+..|.. ++.+..|.|++.
T Consensus 54 ~~~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 54 ILDQLPDDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred HHhhCCCCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 344445678999999987777888888874 777888888874
No 252
>COG4907 Predicted membrane protein [Function unknown]
Probab=74.68 E-value=5.1 Score=40.89 Aligned_cols=43 Identities=19% Similarity=0.286 Sum_probs=24.1
Q ss_pred hhHHhHhhhhcCcCcCccccEEEeecCccceeEeecCHHHHHH
Q 012133 282 RSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKE 324 (470)
Q Consensus 282 ~~v~~~l~~~~~~~~~~Ig~I~i~~~~~~~ga~fdv~~~~a~~ 324 (470)
.....+|++..-++.-.+-.|.+|++.-.-++-.-|.++.+++
T Consensus 489 ~aFKnfLsd~s~lke~~pesI~~W~~ylVYatALGV~dkVvka 531 (595)
T COG4907 489 QAFKNFLSDYSQLKEAKPESIHLWEQYLVYATALGVSDKVVKA 531 (595)
T ss_pred HHHHHHHHhHHHHhhCCCcceehHhhhhhhhhhhccHHHHHHH
Confidence 3344566666665556677899998863222333344444433
No 253
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=74.35 E-value=7.6 Score=43.54 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=38.2
Q ss_pred CeEEEEe-CchHHHHHHHHHHhc----------------------------CCcEEEEeCCCCHHHHHHHHcccccCCee
Q 012133 66 GKTIVFT-QTKRDADEVSLALTS----------------------------IIASEALHGDISQHQRERTLNGFRQGKFT 116 (470)
Q Consensus 66 ~~~lVF~-~t~~~~~~l~~~l~~----------------------------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~ 116 (470)
.+.|||+ +|++.++++++.+.+ .+.+..++|+.+...+...+.. ...
T Consensus 62 ~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~----~p~ 137 (844)
T TIGR02621 62 PRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPH----RPA 137 (844)
T ss_pred cceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCC----CCc
Confidence 4677766 999999888776652 1457888999887765544432 568
Q ss_pred EEEec
Q 012133 117 VLVAT 121 (470)
Q Consensus 117 iLVaT 121 (470)
|||+|
T Consensus 138 IIVgT 142 (844)
T TIGR02621 138 VIVGT 142 (844)
T ss_pred EEEEC
Confidence 99999
No 254
>PTZ00424 helicase 45; Provisional
Probab=73.40 E-value=17 Score=37.11 Aligned_cols=71 Identities=15% Similarity=0.231 Sum_probs=48.3
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccc------cccCCCCCc
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNV 133 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~------~~Gidip~v 133 (470)
..++||+++|++.+.++.+.+.. ...+..+.++....+....+ .+ ...|+|+|+-. ...+.+.++
T Consensus 96 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~Ivv~Tp~~l~~~l~~~~~~l~~i 171 (401)
T PTZ00424 96 ACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKL---KA-GVHMVVGTPGRVYDMIDKRHLRVDDL 171 (401)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHH---cC-CCCEEEECcHHHHHHHHhCCcccccc
Confidence 45899999999999998887653 24566677887655443333 33 35899999621 234567788
Q ss_pred cEEEEe
Q 012133 134 DLIIHY 139 (470)
Q Consensus 134 ~~VI~~ 139 (470)
++||.-
T Consensus 172 ~lvViD 177 (401)
T PTZ00424 172 KLFILD 177 (401)
T ss_pred cEEEEe
Confidence 887743
No 255
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=72.59 E-value=8.1 Score=39.54 Aligned_cols=67 Identities=19% Similarity=0.225 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHc-----CCCeEEEEeCchHHHHHHHHHHhc-------CCcEEEEeCCCCHHHHHHHHcccccCCeeEEE
Q 012133 52 RTILSDLITVYA-----KGGKTIVFTQTKRDADEVSLALTS-------IIASEALHGDISQHQRERTLNGFRQGKFTVLV 119 (470)
Q Consensus 52 ~~~l~~ll~~~~-----~~~~~lVF~~t~~~~~~l~~~l~~-------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLV 119 (470)
+.+|..|+.... ....++|.+||++.|.+++..+.+ .+.+.-+..+|+......++.. ...|+|
T Consensus 75 iPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d----~pdIvV 150 (569)
T KOG0346|consen 75 IPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMD----LPDIVV 150 (569)
T ss_pred HHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHcc----CCCeEE
Confidence 345555554321 234789999999999999888764 3567778888888876655544 678999
Q ss_pred ecc
Q 012133 120 ATD 122 (470)
Q Consensus 120 aTd 122 (470)
+|+
T Consensus 151 ~TP 153 (569)
T KOG0346|consen 151 ATP 153 (569)
T ss_pred eCh
Confidence 998
No 256
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=71.30 E-value=11 Score=28.20 Aligned_cols=58 Identities=19% Similarity=0.127 Sum_probs=40.0
Q ss_pred EEEEeCchHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccc
Q 012133 68 TIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 126 (470)
Q Consensus 68 ~lVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~ 126 (470)
.||.|....++..+.+.......+..+.|.....+....++.+... .+|+|++|--..
T Consensus 2 ~l~ivEg~~da~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~-~~Iii~~D~D~~ 59 (76)
T smart00493 2 VLIIVEGPADAIALEKAGGFGGNVVALGGHLLKKEIIKLLKRLAKK-KEVILATDPDRE 59 (76)
T ss_pred EEEEEcCHHHHHHHHHhcCCCEEEEEEeeeecHHHHHHHHHHHhcC-CEEEEEcCCChh
Confidence 5888999999888888775445566666666555555566665443 579999985433
No 257
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=70.39 E-value=19 Score=39.36 Aligned_cols=53 Identities=15% Similarity=0.087 Sum_probs=43.8
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
....++|.++|...|.+.++.+.+ ++.+..+.+++++++|.... ..+|+++|+
T Consensus 143 ~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y------~~dIvygT~ 200 (656)
T PRK12898 143 AGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY------GADITYCTN 200 (656)
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc------CCCEEEECC
Confidence 567999999999999999888864 47899999999988776654 358999987
No 258
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=69.76 E-value=11 Score=41.97 Aligned_cols=127 Identities=16% Similarity=0.200 Sum_probs=74.6
Q ss_pred cCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHH-----HHHHHHHHHH-cCC---CeEEEEeCchH
Q 012133 6 TMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR-----TILSDLITVY-AKG---GKTIVFTQTKR 76 (470)
Q Consensus 6 Tlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~-----~~l~~ll~~~-~~~---~~~lVF~~t~~ 76 (470)
.+++.+++.++.-..+|...+.. .-+.+...-....+.....-|. .+|..+++.- .+. -.+|=.+|=++
T Consensus 7 ~l~~~v~~~~~~~~~~~t~~Q~~--a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 7 ILDPRVREWFKRKFTSLTPPQRY--AIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKA 84 (814)
T ss_pred hcCHHHHHHHHHhcCCCCHHHHH--HHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHH
Confidence 46778887776656666544321 1111222222233333344453 3334444331 111 25666677787
Q ss_pred HHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc-cc-------ccCCCCCccEEEE
Q 012133 77 DADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AA-------RGLDIPNVDLIIH 138 (470)
Q Consensus 77 ~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv-~~-------~Gidip~v~~VI~ 138 (470)
....+-..|.. ++.+..-||+++|.+|++..++ ...|||+|+- ++ .-=.+.+|.+||.
T Consensus 85 Ln~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~----PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIV 155 (814)
T COG1201 85 LNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKN----PPHILITTPESLAILLNSPKFRELLRDVRYVIV 155 (814)
T ss_pred HHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCC----CCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEe
Confidence 77777666652 6889999999999999877765 7899999971 11 1123467888884
No 259
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=68.56 E-value=22 Score=40.05 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 54 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 54 ~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
+|..++... .+..++|.++|...|.+.++.+.. ++.+.+++++++..+|...+ ..+|+++|+
T Consensus 113 ~Lpa~~~al-~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~ 179 (896)
T PRK13104 113 TLPAYLNAI-SGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY------KADIVYGTN 179 (896)
T ss_pred HHHHHHHHh-cCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh------CCCEEEECC
Confidence 334444444 446799999999999999988874 46789999999999887766 368999997
No 260
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=67.35 E-value=16 Score=40.12 Aligned_cols=66 Identities=17% Similarity=0.260 Sum_probs=46.9
Q ss_pred HHHHHHcCCCeEEEEeCchHHHHHHHHHHhc---CCcEEEEeCCCCHHHHHHHHcccccC--CeeEEEecc-ccc
Q 012133 57 DLITVYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQG--KFTVLVATD-VAA 125 (470)
Q Consensus 57 ~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~R~~~~~~f~~g--~~~iLVaTd-v~~ 125 (470)
.+|.....+++-||.||+-.. +.--..+.+ .+.|..+||. |.+|+++-..+..+ .++|||+|= +++
T Consensus 440 ayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwCPsl~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~la~ 511 (941)
T KOG0389|consen 440 AYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWCPSLKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNLAA 511 (941)
T ss_pred HHHHHcCCCCCcEEEecchhH-HHHHHHHHHhCCceEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeeccc
Confidence 344555567899999998543 333333443 4789999998 78888888888765 789999994 444
No 261
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=66.64 E-value=56 Score=32.67 Aligned_cols=124 Identities=20% Similarity=0.244 Sum_probs=78.1
Q ss_pred EEEEcCcccHHHHHHHHHH-HHcCCCeEEEEeCchHHHHHHHHHHhcC---CcEEEEeCCCCHHHHHHHHcccccCCeeE
Q 012133 42 YAISTTATSKRTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTV 117 (470)
Q Consensus 42 ~~~~~~~~~k~~~l~~ll~-~~~~~~~~lVF~~t~~~~~~l~~~l~~~---~~~~~lhg~~~~~~R~~~~~~f~~g~~~i 117 (470)
....+....|.+++...+. .+..++.+.|-.|..+.|.+|+..|+.. ..+..|||+-++.. + ..+
T Consensus 120 lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~f--------r---~pl 188 (441)
T COG4098 120 LVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSYF--------R---APL 188 (441)
T ss_pred EEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchhc--------c---ccE
Confidence 3344555567777777664 4466789999999999999999999863 56899999976643 3 467
Q ss_pred EEeccc-ccccCCCCCccEEEE---ecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHH
Q 012133 118 LVATDV-AARGLDIPNVDLIIH---YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179 (470)
Q Consensus 118 LVaTdv-~~~Gidip~v~~VI~---~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i 179 (470)
+|||.- +-|=- ...+++|. -.+|.+.+..+|-+-+-.|- ..|.-|++.........+++
T Consensus 189 vVaTtHQLlrFk--~aFD~liIDEVDAFP~~~d~~L~~Av~~ark-~~g~~IylTATp~k~l~r~~ 251 (441)
T COG4098 189 VVATTHQLLRFK--QAFDLLIIDEVDAFPFSDDQSLQYAVKKARK-KEGATIYLTATPTKKLERKI 251 (441)
T ss_pred EEEehHHHHHHH--hhccEEEEeccccccccCCHHHHHHHHHhhc-ccCceEEEecCChHHHHHHh
Confidence 888752 11111 12344443 23788888888887777774 33444444333333333333
No 262
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=65.83 E-value=40 Score=29.55 Aligned_cols=86 Identities=24% Similarity=0.384 Sum_probs=48.9
Q ss_pred ccHHHHHH-HHHHHHcC--CCeEEEEeCchHHHHHHHHHHhcC------CcEEEEeCCCCHHHHHHHHcccccCCeeEEE
Q 012133 49 TSKRTILS-DLITVYAK--GGKTIVFTQTKRDADEVSLALTSI------IASEALHGDISQHQRERTLNGFRQGKFTVLV 119 (470)
Q Consensus 49 ~~k~~~l~-~ll~~~~~--~~~~lVF~~t~~~~~~l~~~l~~~------~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLV 119 (470)
.-|...+. .++..+.. ..++||.+++...+.++...+... .....+++.... ..++.+.+....|++
T Consensus 35 sGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~ 110 (201)
T smart00487 35 SGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKR----EQLRKLESGKTDILV 110 (201)
T ss_pred CchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchH----HHHHHHhcCCCCEEE
Confidence 45665333 33343333 378999999999988888877642 224445554332 233344444558999
Q ss_pred ec-----cccccc-CCCCCccEEEE
Q 012133 120 AT-----DVAARG-LDIPNVDLIIH 138 (470)
Q Consensus 120 aT-----dv~~~G-idip~v~~VI~ 138 (470)
+| +..... ++...+.++|.
T Consensus 111 ~t~~~l~~~~~~~~~~~~~~~~iIi 135 (201)
T smart00487 111 TTPGRLLDLLENDLLELSNVDLVIL 135 (201)
T ss_pred eChHHHHHHHHcCCcCHhHCCEEEE
Confidence 98 333332 35555666553
No 263
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=65.57 E-value=43 Score=34.53 Aligned_cols=21 Identities=5% Similarity=0.007 Sum_probs=12.4
Q ss_pred CcchhhHHhHhhhhcCcCcCc
Q 012133 278 FMSARSVMGFLSDVYPTAADE 298 (470)
Q Consensus 278 ~~~~~~v~~~l~~~~~~~~~~ 298 (470)
..++.+|-.+.....++....
T Consensus 299 da~~~~l~~~Fk~FG~Ik~~~ 319 (419)
T KOG0116|consen 299 DATPAELEEVFKQFGPIKEGG 319 (419)
T ss_pred CCCHHHHHHHHhhcccccccc
Confidence 456666666666666655433
No 264
>PRK00254 ski2-like helicase; Provisional
Probab=65.42 E-value=21 Score=39.78 Aligned_cols=68 Identities=24% Similarity=0.360 Sum_probs=49.1
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-----cccc-cCCCCCc
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPNV 133 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-----v~~~-Gidip~v 133 (470)
...++|+.+|+++.+.+.++.+.. ++.+..++|+.+...+ .+ +..+|+|+|+ ++.. ...+.++
T Consensus 67 ~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~--~~-----~~~~IiV~Tpe~~~~ll~~~~~~l~~l 139 (720)
T PRK00254 67 EGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE--WL-----GKYDIIIATAEKFDSLLRHGSSWIKDV 139 (720)
T ss_pred cCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh--hh-----ccCCEEEEcHHHHHHHHhCCchhhhcC
Confidence 467999999999999999987763 4778999999875432 11 3568999995 2211 2346788
Q ss_pred cEEEE
Q 012133 134 DLIIH 138 (470)
Q Consensus 134 ~~VI~ 138 (470)
.+||.
T Consensus 140 ~lvVi 144 (720)
T PRK00254 140 KLVVA 144 (720)
T ss_pred CEEEE
Confidence 88874
No 265
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=65.06 E-value=23 Score=33.93 Aligned_cols=132 Identities=19% Similarity=0.274 Sum_probs=70.3
Q ss_pred eEEEEEEcCc-ccHHHHHHHHHHHH-cCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCe
Q 012133 39 IKLYAISTTA-TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF 115 (470)
Q Consensus 39 i~~~~~~~~~-~~k~~~l~~ll~~~-~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~ 115 (470)
|.|..+.... .+....+.+++..- .+.-++|||++...-.....+.+++ .-.+..+-+.+. ++ -.++.. ..
T Consensus 34 I~h~tyPdnf~~e~EttIskI~~lAdDp~mKaIVv~q~vpGt~~af~kIkekRpDIl~ia~~~~-ED-p~~i~~----~a 107 (275)
T PF12683_consen 34 IKHVTYPDNFMSEQETTISKIVSLADDPDMKAIVVSQAVPGTAEAFRKIKEKRPDILLIAGEPH-ED-PEVISS----AA 107 (275)
T ss_dssp EEEEE--TTGGGCHHHHHHHHHGGGG-TTEEEEEEE-SS---HHHHHHHHHH-TTSEEEESS---S--HHHHHH----HS
T ss_pred EEEEeCCCcccchHHHHHHHHHHhccCCCccEEEEeCCCcchHHHHHHHHhcCCCeEEEcCCCc-CC-HHHHhh----cc
Confidence 3344444332 24455566666432 3456999999987766666666653 455666666532 22 222333 46
Q ss_pred eEEEecccccccCCCCC------ccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCccc
Q 012133 116 TVLVATDVAARGLDIPN------VDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 189 (470)
Q Consensus 116 ~iLVaTdv~~~Gidip~------v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~ 189 (470)
+|.|.+|...+|..|+. ....|||.+|.+.. |....= ....++.-.+.++++|..
T Consensus 108 Di~~~~D~~~~G~~i~~~Ak~mGAktFVh~sfprhms-~~~l~~------------------Rr~~M~~~C~~lGi~fv~ 168 (275)
T PF12683_consen 108 DIVVNPDEISRGYTIVWAAKKMGAKTFVHYSFPRHMS-YELLAR------------------RRDIMEEACKDLGIKFVE 168 (275)
T ss_dssp SEEEE--HHHHHHHHHHHHHHTT-S-EEEEEETTGGG-SHHHHH------------------HHHHHHHHHHHCT--EEE
T ss_pred CeEeccchhhccHHHHHHHHHcCCceEEEEechhhcc-hHHHHH------------------HHHHHHHHHHHcCCeEEE
Confidence 78899999999988853 45688888888665 332221 236677778888999988
Q ss_pred cCCCCH
Q 012133 190 VSPPVV 195 (470)
Q Consensus 190 ~~~p~~ 195 (470)
+..|.+
T Consensus 169 ~taPDP 174 (275)
T PF12683_consen 169 VTAPDP 174 (275)
T ss_dssp EEE---
T ss_pred EeCCCC
Confidence 766653
No 266
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=64.84 E-value=35 Score=27.83 Aligned_cols=71 Identities=30% Similarity=0.340 Sum_probs=46.1
Q ss_pred ccHHHHHHHHHHHH---cCCCeEEEEeCchHHHHHHHHHHhcC----CcEEEEeCCCCHHHHHHHHcccccCCeeEEEec
Q 012133 49 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI----IASEALHGDISQHQRERTLNGFRQGKFTVLVAT 121 (470)
Q Consensus 49 ~~k~~~l~~ll~~~---~~~~~~lVF~~t~~~~~~l~~~l~~~----~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaT 121 (470)
.-|...+..++... ....++||++++...++++.+.+... ..+..+|+.....++.... .....|+++|
T Consensus 11 ~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~i~t 86 (144)
T cd00046 11 SGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKLL----SGKTDIVVGT 86 (144)
T ss_pred CchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHHh----cCCCCEEEEC
Confidence 45554444444322 24579999999999999988887742 5578888876655544211 2356778888
Q ss_pred cc
Q 012133 122 DV 123 (470)
Q Consensus 122 dv 123 (470)
.-
T Consensus 87 ~~ 88 (144)
T cd00046 87 PG 88 (144)
T ss_pred cH
Confidence 54
No 267
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=62.40 E-value=68 Score=37.06 Aligned_cols=79 Identities=16% Similarity=0.276 Sum_probs=52.0
Q ss_pred HHHHcc--cccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCC---CCCeEEEeeChhhHHHHHH
Q 012133 104 ERTLNG--FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG---KEGTAILMFTSSQRRTVRS 178 (470)
Q Consensus 104 ~~~~~~--f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g---~~g~~i~l~~~~~~~~~~~ 178 (470)
.....+ .++...+|||.+|++-.|.|.|.+..+. .|-|----.++|.+-||.|.- ++.-.|+.|..-.....+.
T Consensus 581 ~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~gl~e~l~~A 659 (962)
T COG0610 581 KDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRGLKEALKKA 659 (962)
T ss_pred hhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcchHHHHHHH
Confidence 334444 3456799999999999999999877655 466677778899999999952 2333344444333333344
Q ss_pred HHHHh
Q 012133 179 LERDV 183 (470)
Q Consensus 179 i~~~~ 183 (470)
+.-+.
T Consensus 660 l~~Y~ 664 (962)
T COG0610 660 LKLYS 664 (962)
T ss_pred HHHhh
Confidence 43333
No 268
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=61.62 E-value=42 Score=38.12 Aligned_cols=119 Identities=13% Similarity=0.180 Sum_probs=69.7
Q ss_pred CCeEEEEeCchHHHHHHHHH----Hhc---CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-cccc----cCC---
Q 012133 65 GGKTIVFTQTKRDADEVSLA----LTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-VAAR----GLD--- 129 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~----l~~---~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-v~~~----Gid--- 129 (470)
..++|++-||++.+..=.+. +.. .+.+..++|+.++++|+.++.. ..+||++|+ ++.. ..|
T Consensus 115 ~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~----pp~IllTNpdMLh~~llr~~~~~~ 190 (851)
T COG1205 115 SARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRN----PPDILLTNPDMLHYLLLRNHDAWL 190 (851)
T ss_pred CccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhC----CCCEEEeCHHHHHHHhccCcchHH
Confidence 35789999998876544444 433 2678999999999999865554 789999985 3322 111
Q ss_pred --CCCccEEEE-----ecCC--CChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCc
Q 012133 130 --IPNVDLIIH-----YELP--NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 187 (470)
Q Consensus 130 --ip~v~~VI~-----~~~p--~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~ 187 (470)
+.++.+||. |.-- .++...+-|.-|-.|.......++..+.+-....+..++..+..+
T Consensus 191 ~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f 257 (851)
T COG1205 191 WLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDF 257 (851)
T ss_pred HHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcc
Confidence 234556663 3222 255666677776666544445555554433323333333344333
No 269
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=61.49 E-value=33 Score=38.92 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=42.5
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
...++|.++|+..|.+.++.+.. ++.+.++.|+++..++...+ ...|+|+|+
T Consensus 135 g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y------~~DIVygTP 191 (970)
T PRK12899 135 GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY------QCDVVYGTA 191 (970)
T ss_pred cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECC
Confidence 34688999999999999988863 36788999999998887554 268999997
No 270
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=61.49 E-value=85 Score=30.84 Aligned_cols=125 Identities=15% Similarity=0.180 Sum_probs=60.1
Q ss_pred cccHHHHHHHHHHHH-----cC-CCeEEEEeCchHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHc------------
Q 012133 48 ATSKRTILSDLITVY-----AK-GGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLN------------ 108 (470)
Q Consensus 48 ~~~k~~~l~~ll~~~-----~~-~~~~lVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~------------ 108 (470)
.+.|...|.++|+.. .. +-++||.++..++.+.+..+|. +.+...-+.|.....+....-+
T Consensus 94 tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~ 173 (297)
T PF11496_consen 94 TSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNS 173 (297)
T ss_dssp T-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S--------------
T ss_pred cCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCccccccccccccc
Confidence 357889999998766 22 3589999999999988888876 4676777777654444332220
Q ss_pred ---ccccCCeeEEEe-ccccccc----CCCCCccEEEEecCCCChh-HHHHHhcccCCCCCCCeEEEeeChhh
Q 012133 109 ---GFRQGKFTVLVA-TDVAARG----LDIPNVDLIIHYELPNDPE-TFVHRSGRTGRAGKEGTAILMFTSSQ 172 (470)
Q Consensus 109 ---~f~~g~~~iLVa-Tdv~~~G----idip~v~~VI~~~~p~~~~-~y~qr~GR~gR~g~~g~~i~l~~~~~ 172 (470)
.=..-...|-++ |+-+... ++-..+++||-+|.-.+.. ..+|++=...|..+.-.+|.++....
T Consensus 174 ~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~~~~PiirLv~~nS 246 (297)
T PF11496_consen 174 KKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRNRLCPIIRLVPSNS 246 (297)
T ss_dssp --------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH-------S--EEEEEETTS
T ss_pred ccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCCCCCcEEEEeeCCC
Confidence 000123445444 4433332 2334778999999766543 34555533333223445555555433
No 271
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=61.41 E-value=31 Score=31.07 Aligned_cols=45 Identities=11% Similarity=0.204 Sum_probs=22.7
Q ss_pred cchhhHHhHhhhhcCcCcCccccEEEeecCc-cceeE--eecCHHHHHHHHhh
Q 012133 279 MSARSVMGFLSDVYPTAADEIGKIHIIADDR-VQGAV--FDLPEEIAKELLNK 328 (470)
Q Consensus 279 ~~~~~v~~~l~~~~~~~~~~Ig~I~i~~~~~-~~ga~--fdv~~~~a~~i~~~ 328 (470)
+..++|-.++.++.+ |..|.+..... ..++| |+-|.+.-++|-..
T Consensus 18 iRekeieDlFyKyg~-----i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygR 65 (241)
T KOG0105|consen 18 IREKEIEDLFYKYGR-----IREIELKNRPGPPPFAFVEFEDPRDAEDAIYGR 65 (241)
T ss_pred hhhccHHHHHhhhcc-----eEEEEeccCCCCCCeeEEEecCccchhhhhhcc
Confidence 445555566655544 55566654433 22344 44455555555443
No 272
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=61.38 E-value=11 Score=36.41 Aligned_cols=18 Identities=17% Similarity=0.122 Sum_probs=12.7
Q ss_pred CCChhHHHHHhcccCCCC
Q 012133 142 PNDPETFVHRSGRTGRAG 159 (470)
Q Consensus 142 p~~~~~y~qr~GR~gR~g 159 (470)
+.+++.|..|.-+.-..|
T Consensus 76 g~~IE~ya~rlfd~W~lG 93 (271)
T COG1512 76 GETIEQYATRLFDKWKLG 93 (271)
T ss_pred CCCHHHHHHHHHHhcCCC
Confidence 568889988887763333
No 273
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=61.29 E-value=2.7 Score=44.63 Aligned_cols=15 Identities=20% Similarity=0.098 Sum_probs=6.7
Q ss_pred HHHHHHHHHhCCCcc
Q 012133 174 RTVRSLERDVGCKFE 188 (470)
Q Consensus 174 ~~~~~i~~~~~~~~~ 188 (470)
.++..+.+.+-..+.
T Consensus 264 kfv~y~~~kvlP~l~ 278 (556)
T PF05918_consen 264 KFVNYMCEKVLPKLS 278 (556)
T ss_dssp HHHHHHHHHTCCCTT
T ss_pred HHHHHHHHHhcCChh
Confidence 444555444433333
No 274
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=61.21 E-value=58 Score=35.86 Aligned_cols=106 Identities=17% Similarity=0.206 Sum_probs=71.1
Q ss_pred cCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhcCC--c-EEEE--------------------e-----CC
Q 012133 46 TTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII--A-SEAL--------------------H-----GD 97 (470)
Q Consensus 46 ~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~~--~-~~~l--------------------h-----g~ 97 (470)
+..+.|.-++..++... +.++||.++++..|.+|+..|+..+ . |..+ + ..
T Consensus 37 vtgs~kt~~~a~~~~~~--~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k~~~~~~ 114 (655)
T TIGR00631 37 VTGSGKTFTMANVIAQV--NRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKDASIND 114 (655)
T ss_pred CCCcHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCccccCCCccccccccCCCCh
Confidence 45567777777777654 4689999999999999999997532 1 3333 1 11
Q ss_pred CCHHHHHHHHcccccCCeeEEEecccccccCCCCC----ccEEEEecCCCChhHHHHHhc
Q 012133 98 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----VDLIIHYELPNDPETFVHRSG 153 (470)
Q Consensus 98 ~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~----v~~VI~~~~p~~~~~y~qr~G 153 (470)
--...|..++..+.+..-.|+|||-.+..++--|. ..+.+..+-..+.+.++.+.-
T Consensus 115 ~i~~~R~~al~~L~~~~~~ivVasv~~i~~l~~p~~~~~~~~~l~~G~~i~~~~l~~~Lv 174 (655)
T TIGR00631 115 EIERLRHSATRSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHLEVGKEIDRRELLRRLV 174 (655)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcHHHhcCCCCHHHHHhccEEEeCCCCcCHHHHHHHHH
Confidence 11346788888887766678888865566665443 345566666667777766543
No 275
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=60.77 E-value=28 Score=30.05 Aligned_cols=82 Identities=20% Similarity=0.193 Sum_probs=51.3
Q ss_pred CcccHHHHHHHHHH-HHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEe-ccc
Q 012133 47 TATSKRTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVA-TDV 123 (470)
Q Consensus 47 ~~~~k~~~l~~ll~-~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVa-Tdv 123 (470)
....+...+..|+. .+..+.+++|+|++.+.+++|-+.|=. .-...+=|+-.... . .....|+|+ ++.
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~--------~-~~~~PV~l~~~~~ 80 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEG--------P-AAGQPVLLTWPGK 80 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCC--------C-CCCCCEEEEcCCC
Confidence 44567888888884 556788999999999999999888732 11223334422111 0 124578887 321
Q ss_pred ccccCCCCCccEEEEecC
Q 012133 124 AARGLDIPNVDLIIHYEL 141 (470)
Q Consensus 124 ~~~Gidip~v~~VI~~~~ 141 (470)
.+.+..+++||.+.
T Consensus 81 ----~~~~~~~~LinL~~ 94 (142)
T PRK05728 81 ----RNANHRDLLINLDG 94 (142)
T ss_pred ----CCCCCCcEEEECCC
Confidence 23455677888763
No 276
>PRK02362 ski2-like helicase; Provisional
Probab=59.52 E-value=20 Score=40.09 Aligned_cols=85 Identities=20% Similarity=0.271 Sum_probs=56.0
Q ss_pred CcccHHHHH-HHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEec
Q 012133 47 TATSKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 121 (470)
Q Consensus 47 ~~~~k~~~l-~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaT 121 (470)
...-|..+. ..+++.+....++|+.+|+++.|.+.++.+.+ ++.+..++|+++.... .+ +...|+|||
T Consensus 48 TGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-----~l--~~~~IiV~T 120 (737)
T PRK02362 48 TASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE-----WL--GDNDIIVAT 120 (737)
T ss_pred CcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc-----cc--CCCCEEEEC
Confidence 334554332 23444444678999999999999999988874 4678889998765431 11 246899999
Q ss_pred c-----ccccc-CCCCCccEEEE
Q 012133 122 D-----VAARG-LDIPNVDLIIH 138 (470)
Q Consensus 122 d-----v~~~G-idip~v~~VI~ 138 (470)
+ ++..+ ..+.++.+||.
T Consensus 121 pek~~~llr~~~~~l~~v~lvVi 143 (737)
T PRK02362 121 SEKVDSLLRNGAPWLDDITCVVV 143 (737)
T ss_pred HHHHHHHHhcChhhhhhcCEEEE
Confidence 5 22222 23567888874
No 277
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=59.33 E-value=4.4 Score=41.70 Aligned_cols=15 Identities=40% Similarity=0.975 Sum_probs=14.7
Q ss_pred cccCCCCCccCCCCC
Q 012133 455 CFNCGKSGHRASECP 469 (470)
Q Consensus 455 c~~c~~~gh~~~~c~ 469 (470)
|+.|+.-||+++||+
T Consensus 288 c~~cg~~gH~~~dc~ 302 (554)
T KOG0119|consen 288 CKICGPLGHISIDCK 302 (554)
T ss_pred ccccCCcccccccCC
Confidence 999999999999997
No 278
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=59.11 E-value=38 Score=37.92 Aligned_cols=61 Identities=10% Similarity=0.115 Sum_probs=47.0
Q ss_pred HHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCC-HHHHHHHHcccccCCeeEEEecc
Q 012133 55 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDIS-QHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 55 l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~-~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
|..++... .+..++|.++|...|.+.++.+.. ++.+..+.++++ .++|..+.. ..|+++|+
T Consensus 110 lp~~l~al-~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~y~------~dIvygT~ 176 (790)
T PRK09200 110 MPLYLNAL-EGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIYE------ADIIYTTN 176 (790)
T ss_pred HHHHHHHH-cCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHhcC------CCEEEECC
Confidence 33344444 567999999999999998887763 478999999999 887775542 68999994
No 279
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=58.74 E-value=2.6e+02 Score=30.33 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=38.4
Q ss_pred EEEEEeeCCccccCCcchhhHHhHhhhhcCcCcCccccEEEeecCccceeEeec-CHHHHHHHHh-hcCC--CCCeEEEe
Q 012133 264 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDL-PEEIAKELLN-KQIP--PGNTISKI 339 (470)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~Ig~I~i~~~~~~~ga~fdv-~~~~a~~i~~-~~~~--~g~~i~~~ 339 (470)
.+|+|..- ...++..+|..++.... ..+|-+|++..++ +|++. ..+.|++.++ +... .+..|.+.
T Consensus 234 k~LfVgNL----~~~~tee~L~~~F~~f~---~G~I~rV~~~rgf----AFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 234 KILYVRNL----MTTTTEEIIEKSFSEFK---PGKVERVKKIRDY----AFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred cEEEEeCC----CCCCCHHHHHHHHHhcC---CCceEEEEeecCe----EEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45666533 23577888887776541 1346667776665 56666 3455555554 3322 45555555
Q ss_pred ccCCC
Q 012133 340 TKLPA 344 (470)
Q Consensus 340 ~~lP~ 344 (470)
-..|.
T Consensus 303 ~Akp~ 307 (578)
T TIGR01648 303 LAKPV 307 (578)
T ss_pred EccCC
Confidence 44443
No 280
>PRK01172 ski2-like helicase; Provisional
Probab=57.20 E-value=28 Score=38.42 Aligned_cols=85 Identities=22% Similarity=0.253 Sum_probs=54.5
Q ss_pred CcccHHHHH-HHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEec
Q 012133 47 TATSKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 121 (470)
Q Consensus 47 ~~~~k~~~l-~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaT 121 (470)
...-|..+. ..+++......++|+.+|+++.|.+.++.+.+ ++.+..++|+.....+ .+ ...+|+|+|
T Consensus 46 TGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~--~~-----~~~dIiv~T 118 (674)
T PRK01172 46 TAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD--FI-----KRYDVVILT 118 (674)
T ss_pred CCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh--hh-----ccCCEEEEC
Confidence 334565432 23344444567999999999999999888763 4667788888754322 11 146899999
Q ss_pred c-----ccccc-CCCCCccEEEE
Q 012133 122 D-----VAARG-LDIPNVDLIIH 138 (470)
Q Consensus 122 d-----v~~~G-idip~v~~VI~ 138 (470)
+ ++.+. ..+.++.+||.
T Consensus 119 pek~~~l~~~~~~~l~~v~lvVi 141 (674)
T PRK01172 119 SEKADSLIHHDPYIINDVGLIVA 141 (674)
T ss_pred HHHHHHHHhCChhHHhhcCEEEE
Confidence 7 12222 33677888774
No 281
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=56.21 E-value=57 Score=29.36 Aligned_cols=67 Identities=9% Similarity=0.173 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCCC-eEEEEeCchHHHHHHHHHHhcC---CcEEEEeCCCCHHHHHHHHcccccCCeeEE
Q 012133 52 RTILSDLITVYAKGG-KTIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVL 118 (470)
Q Consensus 52 ~~~l~~ll~~~~~~~-~~lVF~~t~~~~~~l~~~l~~~---~~~~~lhg~~~~~~R~~~~~~f~~g~~~iL 118 (470)
.+++..+++.....+ ++-++-.+...++++++.|++. +.+...||-+++++.+.+++..+....+||
T Consensus 34 ~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil 104 (177)
T TIGR00696 34 PDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIV 104 (177)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEE
Confidence 456666666543334 6666666677788888888853 455556899988877778877776554443
No 282
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=54.87 E-value=4.5 Score=44.04 Aligned_cols=15 Identities=53% Similarity=1.460 Sum_probs=14.6
Q ss_pred cccCCCCCccCCCCC
Q 012133 455 CFNCGKSGHRASECP 469 (470)
Q Consensus 455 c~~c~~~gh~~~~c~ 469 (470)
||.||+.||.+.||.
T Consensus 263 C~~cgq~gh~~~dc~ 277 (931)
T KOG2044|consen 263 CFLCGQTGHEAKDCE 277 (931)
T ss_pred chhhcccCCcHhhcC
Confidence 999999999999996
No 283
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=54.59 E-value=34 Score=32.39 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc
Q 012133 51 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 87 (470)
Q Consensus 51 k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~ 87 (470)
++..-..++..+..++..|+|+.|+..+.+......+
T Consensus 49 ~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V~~~A~ 85 (252)
T COG0052 49 RLREAYKFLRRIAANGGKILFVGTKKQAQEPVKEFAE 85 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEechHHHHHHHHHHHH
Confidence 3444445566666678889999999999888777664
No 284
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=53.91 E-value=35 Score=36.78 Aligned_cols=58 Identities=21% Similarity=0.313 Sum_probs=49.0
Q ss_pred CCeEEEEeCchHHHH-HHHHHHhcCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 65 GGKTIVFTQTKRDAD-EVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~-~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
.+-+||..|-...-+ ++......++.+..+|+.++.++|..++..+..|.+++|.-++
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisP 115 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISP 115 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECc
Confidence 578999999877654 4444445689999999999999999999999999999997766
No 285
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=53.67 E-value=56 Score=29.12 Aligned_cols=68 Identities=10% Similarity=0.179 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHcCC-CeEEEEeCchHHHHHHHHHHhcCC---cEE-EEeCCCCHHHHHHHHcccccCCeeEEE
Q 012133 52 RTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSII---ASE-ALHGDISQHQRERTLNGFRQGKFTVLV 119 (470)
Q Consensus 52 ~~~l~~ll~~~~~~-~~~lVF~~t~~~~~~l~~~l~~~~---~~~-~lhg~~~~~~R~~~~~~f~~g~~~iLV 119 (470)
.+++..+++..... .++-++-.+.+.+++++..|++.+ .+. ..|+-++..+.+.+++..+....+||+
T Consensus 34 ~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~ 106 (172)
T PF03808_consen 34 SDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVF 106 (172)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 45556666544333 466666677777888888998643 344 456768888889999888876655443
No 286
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=52.36 E-value=15 Score=40.24 Aligned_cols=77 Identities=22% Similarity=0.335 Sum_probs=60.9
Q ss_pred cHHHHHHHHHHHH-cCCCeEEEEeCchHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHccccc---CCeeEEEeccccc
Q 012133 50 SKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQ---GKFTVLVATDVAA 125 (470)
Q Consensus 50 ~k~~~l~~ll~~~-~~~~~~lVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~f~~---g~~~iLVaTdv~~ 125 (470)
.|+.+|..+++.+ ....+++||..-....+.|...+........+.|..+-.+|+.+++.|.. .....|++|...+
T Consensus 615 ~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g 694 (696)
T KOG0383|consen 615 GKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEGKYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGG 694 (696)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccCcceeccCCccchhhhhhccccCCCCccceEEEeeccccc
Confidence 4555666666544 45679999999999999999998843377889999999999999999983 4678899998654
Q ss_pred c
Q 012133 126 R 126 (470)
Q Consensus 126 ~ 126 (470)
.
T Consensus 695 ~ 695 (696)
T KOG0383|consen 695 L 695 (696)
T ss_pred C
Confidence 3
No 287
>COG4371 Predicted membrane protein [Function unknown]
Probab=51.31 E-value=33 Score=32.36 Aligned_cols=6 Identities=17% Similarity=0.318 Sum_probs=2.3
Q ss_pred cCHHHH
Q 012133 317 LPEEIA 322 (470)
Q Consensus 317 v~~~~a 322 (470)
+|....
T Consensus 10 ~Pk~~~ 15 (334)
T COG4371 10 SPKRAR 15 (334)
T ss_pred CcHHHH
Confidence 333333
No 288
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=50.99 E-value=64 Score=30.87 Aligned_cols=69 Identities=19% Similarity=0.292 Sum_probs=46.4
Q ss_pred CeEEEEeCchHHHHHHHHHHhcC----CcEEEEeCC-CCHHHHHHHHcccccCCeeEEEecc------cccccCCCCCcc
Q 012133 66 GKTIVFTQTKRDADEVSLALTSI----IASEALHGD-ISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVD 134 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~~----~~~~~lhg~-~~~~~R~~~~~~f~~g~~~iLVaTd------v~~~Gidip~v~ 134 (470)
..+||+|.+--.|-.|.+.|... ..|.-|-+. +.-+++...++ ...+.|.|+|+ +-.-.+.+..+.
T Consensus 127 P~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~---~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 127 PHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLK---KTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHH---hCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 47899999988888888888742 334434332 45556665554 35789999998 333446777777
Q ss_pred EEE
Q 012133 135 LII 137 (470)
Q Consensus 135 ~VI 137 (470)
+||
T Consensus 204 ~iv 206 (252)
T PF14617_consen 204 RIV 206 (252)
T ss_pred EEE
Confidence 766
No 289
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=50.72 E-value=33 Score=38.22 Aligned_cols=71 Identities=18% Similarity=0.305 Sum_probs=56.4
Q ss_pred CeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCC--CCCCeE-----------EEeeChhhHHHHHHHH
Q 012133 114 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA--GKEGTA-----------ILMFTSSQRRTVRSLE 180 (470)
Q Consensus 114 ~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~--g~~g~~-----------i~l~~~~~~~~~~~i~ 180 (470)
..+.|.+-.++-+|.|-|+|=.++-.....|..+=+|.+||.-|. .+.|.- .+++...+..+++.|.
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 578999999999999999999999888888999999999999883 344433 3456677777777776
Q ss_pred HHhC
Q 012133 181 RDVG 184 (470)
Q Consensus 181 ~~~~ 184 (470)
+.+.
T Consensus 563 kEI~ 566 (985)
T COG3587 563 KEIN 566 (985)
T ss_pred HHHH
Confidence 6653
No 290
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=49.94 E-value=23 Score=36.27 Aligned_cols=81 Identities=19% Similarity=0.242 Sum_probs=57.5
Q ss_pred EEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccC--CeeEE
Q 012133 42 YAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG--KFTVL 118 (470)
Q Consensus 42 ~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g--~~~iL 118 (470)
.|+..|...-..+..+|-..+ ..+-+|||.+-...+..-...|.+ .+++..|.+.|+..+|.+++-++..- .+++|
T Consensus 39 VyVsMPTGaGKSLCyQLPaL~-~~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~L 117 (641)
T KOG0352|consen 39 VYVSMPTGAGKSLCYQLPALV-HGGITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKML 117 (641)
T ss_pred EEEeccCCCchhhhhhchHHH-hCCeEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEE
Confidence 455555543333333333333 345899999998888776666664 68899999999999999999988753 57888
Q ss_pred Eeccc
Q 012133 119 VATDV 123 (470)
Q Consensus 119 VaTdv 123 (470)
--|+-
T Consensus 118 YITPE 122 (641)
T KOG0352|consen 118 YITPE 122 (641)
T ss_pred EEchh
Confidence 77763
No 291
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=48.53 E-value=79 Score=28.15 Aligned_cols=67 Identities=12% Similarity=0.232 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcC-CCeEEEEeCchHHHHHHHHHHhcC---CcEEE-EeCCCCHHHHHHHHcccccCCeeEE
Q 012133 52 RTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTSI---IASEA-LHGDISQHQRERTLNGFRQGKFTVL 118 (470)
Q Consensus 52 ~~~l~~ll~~~~~-~~~~lVF~~t~~~~~~l~~~l~~~---~~~~~-lhg~~~~~~R~~~~~~f~~g~~~iL 118 (470)
.+++..+++.... +.++-++-.+.+.++++++.|++. +.+.. .|+-+...+...+++..+....+||
T Consensus 32 ~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv 103 (171)
T cd06533 32 SDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADIL 103 (171)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEE
Confidence 4555666655433 457777777788888888888853 44444 6778877777777777766554444
No 292
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=47.97 E-value=75 Score=35.83 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 54 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 54 ~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
.|..++..+ .+..+-|.++|...|.+-++.+.. ++.+..+.++++.++|..++. .+|+++|+
T Consensus 112 ~lpa~l~aL-~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~------~dI~ygT~ 178 (830)
T PRK12904 112 TLPAYLNAL-TGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA------ADITYGTN 178 (830)
T ss_pred HHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC------CCeEEECC
Confidence 344444555 345788999999999888887763 478999999999999988864 68999987
No 293
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=46.67 E-value=81 Score=34.95 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=40.8
Q ss_pred cCCCeEEEEeCchHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHcccc-cCCeeEEEec
Q 012133 63 AKGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFR-QGKFTVLVAT 121 (470)
Q Consensus 63 ~~~~~~lVF~~t~~~~~~l~~~l~--~~~~~~~lhg~~~~~~R~~~~~~f~-~g~~~iLVaT 121 (470)
..+++-||.||-...-.-+.+.-+ ..+.+..+||+ +++|...++.+. .+...|+|+|
T Consensus 215 ~~~GPfLVi~P~StL~NW~~Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~~~~fdV~iTs 274 (971)
T KOG0385|consen 215 GIPGPFLVIAPKSTLDNWMNEFKRFTPSLNVVVYHGD--KEERAALRRDIMLPGRFDVCITS 274 (971)
T ss_pred CCCCCeEEEeeHhhHHHHHHHHHHhCCCcceEEEeCC--HHHHHHHHHHhhccCCCceEeeh
Confidence 447899999987544333333222 36889999999 688888777765 4588999988
No 294
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=46.39 E-value=58 Score=27.91 Aligned_cols=80 Identities=19% Similarity=0.214 Sum_probs=40.4
Q ss_pred HHHHHHHHH-HHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCC
Q 012133 52 RTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLD 129 (470)
Q Consensus 52 ~~~l~~ll~-~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gid 129 (470)
...+.+|+. .+..+.+++|+|++.+.++.|-+.|=. .-....=|+-.... ......|+|+++... ..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~i~~~~~~--~~ 83 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PAARQPVLITWDQEA--NP 83 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------STT--SEEEE-TTS-----
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CCCCCeEEEecCccc--CC
Confidence 467777774 456778999999999999999888732 11233333332111 111358999987643 22
Q ss_pred CCCccEEEEecCC
Q 012133 130 IPNVDLIIHYELP 142 (470)
Q Consensus 130 ip~v~~VI~~~~p 142 (470)
.+..+++||.+..
T Consensus 84 ~~~~~vLinL~~~ 96 (137)
T PF04364_consen 84 NNHADVLINLSGE 96 (137)
T ss_dssp -S--SEEEE--SS
T ss_pred CCCCCEEEECCCC
Confidence 3336889987643
No 295
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=46.17 E-value=26 Score=33.90 Aligned_cols=9 Identities=11% Similarity=0.213 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 012133 77 DADEVSLAL 85 (470)
Q Consensus 77 ~~~~l~~~l 85 (470)
++++.+..|
T Consensus 78 ~IE~ya~rl 86 (271)
T COG1512 78 TIEQYATRL 86 (271)
T ss_pred CHHHHHHHH
Confidence 344433333
No 296
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=46.01 E-value=1.5e+02 Score=32.69 Aligned_cols=106 Identities=18% Similarity=0.230 Sum_probs=68.5
Q ss_pred cCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhcCC---cEEEE--------------------eCCC--C-
Q 012133 46 TTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII---ASEAL--------------------HGDI--S- 99 (470)
Q Consensus 46 ~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~~---~~~~l--------------------hg~~--~- 99 (470)
+....|..++..+++.. +.++||.+++...|.+++..|...+ .|..+ +-.. +
T Consensus 40 l~gs~ka~lia~l~~~~--~r~vLIVt~~~~~A~~l~~dL~~~~~~~~v~~f~s~~~~~~~~~~~P~~d~~~~~~~~~~~ 117 (652)
T PRK05298 40 VTGSGKTFTMANVIARL--QRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINE 117 (652)
T ss_pred CCCcHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHhcCCCeEEEeCChhhccCccccCCCCcccccccCCCCh
Confidence 44556776676666543 4689999999999999999986432 13333 1111 1
Q ss_pred --HHHHHHHHcccccCCeeEEEecccccccCCCCC----ccEEEEecCCCChhHHHHHhc
Q 012133 100 --QHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----VDLIIHYELPNDPETFVHRSG 153 (470)
Q Consensus 100 --~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~----v~~VI~~~~p~~~~~y~qr~G 153 (470)
..+|..++..+.++...|+|+|-.+...+--|+ ..+.+..+-..+.+.++.+.-
T Consensus 118 ~~~~~R~~~l~~L~~~~~~ivv~s~~al~~~~~~~~~~~~~~~l~~G~~i~~~~l~~~L~ 177 (652)
T PRK05298 118 EIERLRHSATKSLLERRDVIVVASVSCIYGLGSPEEYLKMVLSLRVGQEIDRRELLRRLV 177 (652)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEcHHHhcCCCCHHHHHhceEEEeCCCCcCHHHHHHHHH
Confidence 346888898888766667777754445554443 334556666677777766554
No 297
>PF12353 eIF3g: Eukaryotic translation initiation factor 3 subunit G ; InterPro: IPR024675 At least eleven different protein factors are involved in initiation of protein synthesis in eukaryotes. Binding of initiator tRNA and mRNA to the 40S subunit requires the presence of the translation initiation factors eIF-2 and eIF-3, with eIF-3 being particularly important for 80S ribosome dissociation and mRNA binding []. eIF-3 is the most complex translation inititation factor, consisting of about 13 putative subunits and having a molecular weight of between 550 - 700 kDa in mammalian cells. Subunits are designated eIF-3a - eIF-3m; the large number of subunits means that the interactions between the individual subunits that make up the eIF-3 complex are complex and varied. Subunit G is required for eIF3 integrity. This entry represents a domain of approximately 130 amino acids in length found at the N terminus of eukaryotic translation initiation factor 3 subunit G. This domain is commonly found in association with the RNA recognition domain PF00076 from PFAM.
Probab=45.87 E-value=11 Score=32.10 Aligned_cols=16 Identities=38% Similarity=0.877 Sum_probs=13.9
Q ss_pred ccccCCCCCccCCCCCC
Q 012133 454 ACFNCGKSGHRASECPN 470 (470)
Q Consensus 454 ~c~~c~~~gh~~~~c~~ 470 (470)
.|+.|+ --||...||.
T Consensus 108 ~CR~Ck-GdH~T~~CPy 123 (128)
T PF12353_consen 108 KCRICK-GDHWTSKCPY 123 (128)
T ss_pred EeCCCC-CCcccccCCc
Confidence 399997 7799999994
No 298
>COG4907 Predicted membrane protein [Function unknown]
Probab=45.49 E-value=21 Score=36.66 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=4.6
Q ss_pred ccEEEEecCC
Q 012133 133 VDLIIHYELP 142 (470)
Q Consensus 133 v~~VI~~~~p 142 (470)
-.+++|..+|
T Consensus 298 kp~~vn~i~~ 307 (595)
T COG4907 298 KPIKVNRILP 307 (595)
T ss_pred CCcEEEEecC
Confidence 3344454444
No 299
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=43.97 E-value=49 Score=30.17 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=41.1
Q ss_pred CCeEEEEeCchHHHHHHHHHHhcCCcEEEEeCCCCHH--------HHHHHHcccccCCe-eEEEecccccc
Q 012133 65 GGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQH--------QRERTLNGFRQGKF-TVLVATDVAAR 126 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~--------~R~~~~~~f~~g~~-~iLVaTdv~~~ 126 (470)
+..+|..+.+.+++..+.+.-.-.=.-.+|||.+++- .-...+++..++.+ .|++||+.-..
T Consensus 78 d~~~icVVe~p~Dv~a~E~~~~f~G~YhVL~G~lspl~gigpe~l~i~~L~~Rl~~~~~~EvIlAtnpTvE 148 (198)
T COG0353 78 DKSQLCVVEEPKDVLALEKTGEFRGLYHVLGGLLSPLDGIGPEDLNIDELLQRLAEGSIKEVILATNPTVE 148 (198)
T ss_pred CCceEEEEcchHHHHHHHHhcccCeeEEEecCccCcccCCCcccccHHHHHHHHhcCCCceEEEecCCCcc
Confidence 4568888999888877665433222345677766543 23566777777777 99999985433
No 300
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=43.91 E-value=36 Score=27.60 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=29.3
Q ss_pred HHHcCCCeEEEEeCch--HHHHHHHHHHhc-CCcEEEEeCCCCH
Q 012133 60 TVYAKGGKTIVFTQTK--RDADEVSLALTS-IIASEALHGDISQ 100 (470)
Q Consensus 60 ~~~~~~~~~lVF~~t~--~~~~~l~~~l~~-~~~~~~lhg~~~~ 100 (470)
..+.++.++||||++- ..+..++..|.. ++.+..|.|++..
T Consensus 59 ~~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~~ 102 (110)
T cd01521 59 AKLDKEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLDW 102 (110)
T ss_pred hcCCCCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHHH
Confidence 3345668999999875 356677777763 6778889888744
No 301
>PF13245 AAA_19: Part of AAA domain
Probab=43.74 E-value=40 Score=25.62 Aligned_cols=40 Identities=30% Similarity=0.386 Sum_probs=29.6
Q ss_pred cCcccHHHHHHHHHHHHc-C----CCeEEEEeCchHHHHHHHHHH
Q 012133 46 TTATSKRTILSDLITVYA-K----GGKTIVFTQTKRDADEVSLAL 85 (470)
Q Consensus 46 ~~~~~k~~~l~~ll~~~~-~----~~~~lVF~~t~~~~~~l~~~l 85 (470)
.+-.-|..++..++..+- . ..++||.++|+..+++|.+.|
T Consensus 18 ~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 18 PPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 455677766665554331 1 678999999999999999988
No 302
>KOG2673 consensus Uncharacterized conserved protein, contains PSP domain [Function unknown]
Probab=43.29 E-value=12 Score=38.30 Aligned_cols=16 Identities=50% Similarity=1.367 Sum_probs=15.1
Q ss_pred cccCCCCCccCCCCCC
Q 012133 455 CFNCGKSGHRASECPN 470 (470)
Q Consensus 455 c~~c~~~gh~~~~c~~ 470 (470)
||||+..-|=-||||+
T Consensus 131 CFNC~g~~hsLrdC~r 146 (485)
T KOG2673|consen 131 CFNCGGTPHSLRDCPR 146 (485)
T ss_pred ccccCCCCCccccCCC
Confidence 9999999999999995
No 303
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=43.15 E-value=57 Score=31.68 Aligned_cols=110 Identities=13% Similarity=0.181 Sum_probs=60.4
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-----c-ccccCCCCC
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----V-AARGLDIPN 132 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-----v-~~~Gidip~ 132 (470)
..-++||..||++.+.++.+.+.. ++.|...-|+-+-.+-.+.++ - ...++..|+ + --+.+...+
T Consensus 94 r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld---~-G~hvVsGtPGrv~dmikr~~L~tr~ 169 (400)
T KOG0328|consen 94 RETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLD---Y-GQHVVSGTPGRVLDMIKRRSLRTRA 169 (400)
T ss_pred ceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhc---c-cceEeeCCCchHHHHHHhccccccc
Confidence 346899999999999999887763 355666666655544444444 2 346777775 2 234466667
Q ss_pred ccEEEEecCCC--ChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHH
Q 012133 133 VDLIIHYELPN--DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178 (470)
Q Consensus 133 v~~VI~~~~p~--~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~ 178 (470)
|.++|.-.... +. -|-+.+=+.-|.=.++..+++++..-...+..
T Consensus 170 vkmlVLDEaDemL~k-gfk~Qiydiyr~lp~~~Qvv~~SATlp~eile 216 (400)
T KOG0328|consen 170 VKMLVLDEADEMLNK-GFKEQIYDIYRYLPPGAQVVLVSATLPHEILE 216 (400)
T ss_pred eeEEEeccHHHHHHh-hHHHHHHHHHHhCCCCceEEEEeccCcHHHHH
Confidence 77666422110 11 11122223333334566666666544333333
No 304
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=42.11 E-value=1.1e+02 Score=27.61 Aligned_cols=8 Identities=13% Similarity=0.281 Sum_probs=3.6
Q ss_pred eEEEEEee
Q 012133 263 WVTLQLTR 270 (470)
Q Consensus 263 ~~~~~~~~ 270 (470)
++++.|..
T Consensus 28 va~fsVAv 35 (182)
T PRK06958 28 VANIRLAT 35 (182)
T ss_pred EEEEEEEe
Confidence 44444443
No 305
>PRK15327 type III secretion system needle complex protein PrgH; Provisional
Probab=41.54 E-value=3.6e+02 Score=27.60 Aligned_cols=94 Identities=11% Similarity=0.062 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhcCC
Q 012133 10 WVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII 89 (470)
Q Consensus 10 ~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~~ 89 (470)
.+..|..-+-.++..+.+....+. ..|+.+....-.+...+.|.......++.| ++..+.-.++...|...+
T Consensus 171 ~v~tL~~~L~g~~~p~~Il~grD~-------~iyVLa~~qrd~~W~~Q~L~k~~~~~~v~v-~~~~~~~~~ie~~L~~~~ 242 (393)
T PRK15327 171 QAAELDSLLGQEKERFQVLPGRDK-------MLYVAAQNERDTLWARQSLARGDYDKNARV-INENEENKRVSTWLDTYY 242 (393)
T ss_pred HHHHHHHHhcCCCCceEEEeCCCC-------cEEEEEccccHhHHHHHHHhhCCCcCceEE-echHHHHHHHHHHHHhcC
Confidence 455566555556666666543322 255556555666666666554434455555 456667778888887542
Q ss_pred ---------------cEEEEe---CCCCHHHHHHHHcccc
Q 012133 90 ---------------ASEALH---GDISQHQRERTLNGFR 111 (470)
Q Consensus 90 ---------------~~~~lh---g~~~~~~R~~~~~~f~ 111 (470)
++..++ +.+++.+++.+.+.++
T Consensus 243 P~l~~lkv~l~~P~~Pvl~ls~~r~~l~~~~~~~l~~~l~ 282 (393)
T PRK15327 243 PQLAYYRLHFDEPRKPVLWLSRQRNVLSKKELEVLSQKLR 282 (393)
T ss_pred CCceEEEEECCCCCCCEEEEEcccccCCHHHHHHHHHHHH
Confidence 234444 6688888877555554
No 306
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=41.34 E-value=99 Score=27.17 Aligned_cols=82 Identities=13% Similarity=0.140 Sum_probs=50.9
Q ss_pred CcccHHHHHHHHHH-HHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccc
Q 012133 47 TATSKRTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 124 (470)
Q Consensus 47 ~~~~k~~~l~~ll~-~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~ 124 (470)
..+.+...+.+|+. .+..+.+++|.|++.+.++.|=+.|=. .-..++=|+-..... .....|+|+++.-
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~~~~~~~---------~a~~PV~L~~~~~ 80 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKLDPQ---------PEKQPIYITDELQ 80 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCC---------CCCCCEEEecCCC
Confidence 55678888888884 566778999999999988888877732 112233344321110 1245788875321
Q ss_pred cccCCCCCccEEEEecC
Q 012133 125 ARGLDIPNVDLIIHYEL 141 (470)
Q Consensus 125 ~~Gidip~v~~VI~~~~ 141 (470)
+.+..+++||.+.
T Consensus 81 ----~p~~~~vLiNL~~ 93 (154)
T PRK06646 81 ----NPNNASVLVIISP 93 (154)
T ss_pred ----CCCCCCEEEECCC
Confidence 2225567888765
No 307
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=40.96 E-value=1.1e+02 Score=24.78 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=21.5
Q ss_pred CCCeEEEEeC-chH----HHHHHHHHHh------cCCcEEEEeCCCCH
Q 012133 64 KGGKTIVFTQ-TKR----DADEVSLALT------SIIASEALHGDISQ 100 (470)
Q Consensus 64 ~~~~~lVF~~-t~~----~~~~l~~~l~------~~~~~~~lhg~~~~ 100 (470)
++.+++|||. +-. .+..+.+.|. ....+..|.|++..
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~ 108 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNA 108 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHH
Confidence 4568999997 322 2333433332 13458888888754
No 308
>PF12614 RRF_GI: Ribosome recycling factor ; InterPro: IPR022253 This family of proteins is found in bacteria and viruses. Proteins in this family are approximately 130 amino acids in length. There are two conserved sequence motifs: LPS and LKR. Overproduction of ribosome recycling factor (RRF) reduces tna operon expression and increases the rate of cleavage of TnaC-tRNA(2)(Pro), relieving the growth inhibition associated with plasmid-mediated tnaC overexpression.
Probab=40.61 E-value=1.1e+02 Score=25.99 Aligned_cols=31 Identities=29% Similarity=0.631 Sum_probs=19.4
Q ss_pred ChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCcccc
Q 012133 144 DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV 190 (470)
Q Consensus 144 ~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~ 190 (470)
+..+++||+|+.. ...++.+....+...+++
T Consensus 8 ~LpSlIHRig~~~----------------~k~~ka~A~q~~CeLKRV 38 (128)
T PF12614_consen 8 PLPSLIHRIGREA----------------VKQAKALARQHGCELKRV 38 (128)
T ss_pred ccHHHHHHhhHHH----------------HHHHHHHHHHhCchHHHH
Confidence 4568999999842 234555555555555544
No 309
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=40.28 E-value=82 Score=31.18 Aligned_cols=102 Identities=18% Similarity=0.260 Sum_probs=60.8
Q ss_pred CeEEEEeCchHHHHHHHH---HHhcC--CcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-----cccccC-CCCCcc
Q 012133 66 GKTIVFTQTKRDADEVSL---ALTSI--IASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARGL-DIPNVD 134 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~---~l~~~--~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-----v~~~Gi-dip~v~ 134 (470)
-++||.++|++.|-+..+ .|.++ +.+.+..|+.+-. ..++.- +..+.++|+|+ .+..|+ |+.++.
T Consensus 154 IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lr--DDI~Rl--~~~VH~~vgTPGRIlDL~~KgVa~ls~c~ 229 (459)
T KOG0326|consen 154 IQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLR--DDIMRL--NQTVHLVVGTPGRILDLAKKGVADLSDCV 229 (459)
T ss_pred eeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccc--cceeee--cCceEEEEcCChhHHHHHhcccccchhce
Confidence 478999999998776554 45553 5677788886543 333332 34789999996 566665 455555
Q ss_pred EEEEe--------cCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHH
Q 012133 135 LIIHY--------ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178 (470)
Q Consensus 135 ~VI~~--------~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~ 178 (470)
++|.- ++-..++.++.-.-+ ...+++|+..-.-.++.
T Consensus 230 ~lV~DEADKlLs~~F~~~~e~li~~lP~-------~rQillySATFP~tVk~ 274 (459)
T KOG0326|consen 230 ILVMDEADKLLSVDFQPIVEKLISFLPK-------ERQILLYSATFPLTVKG 274 (459)
T ss_pred EEEechhhhhhchhhhhHHHHHHHhCCc-------cceeeEEecccchhHHH
Confidence 55532 222344444544433 35677776654444443
No 310
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=39.56 E-value=67 Score=25.07 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=26.0
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCC
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 99 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~ 99 (470)
+.++++||.+-..+...+..|.. ++.+..|.|++.
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 46899999986666677777764 677777888863
No 311
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=37.83 E-value=22 Score=28.47 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=40.0
Q ss_pred EEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHH------------HHHHHHcccccCCeeEEEecccccccC
Q 012133 68 TIVFTQTKRDADEVSLALTS-IIASEALHGDISQH------------QRERTLNGFRQGKFTVLVATDVAARGL 128 (470)
Q Consensus 68 ~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~------------~R~~~~~~f~~g~~~iLVaTdv~~~Gi 128 (470)
.||.+.....+..+++.|.. .+.+.+..|.+-.. .+.+.+.+.....-.|+||||.-..|-
T Consensus 1 ~liIvE~ps~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~D~EGe 74 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAKALGGEEYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLLKKADEIIIATDPDREGE 74 (100)
T ss_dssp EEEEESSHHHHHHHHHHSSTTTEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-SSHHHH
T ss_pred CEEEEeCHHHHHHHHHHcCCCCEEEEEeCCcccccccccccccccccccchhhHHHhhhccEeeecCCCChHHH
Confidence 47889999999999999973 46677777765322 224444444344568999999655553
No 312
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=37.29 E-value=1.9e+02 Score=22.67 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=26.9
Q ss_pred cCCCeEEEEeCchHHHHHHHHHHhc-CCc-EEEEeCCCC
Q 012133 63 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 99 (470)
Q Consensus 63 ~~~~~~lVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~ 99 (470)
.++.++||+|.+-..+...+..|.. ++. +..|.|++.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 4667899999886666666777763 664 777888764
No 313
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=37.19 E-value=3.2e+02 Score=29.73 Aligned_cols=113 Identities=19% Similarity=0.221 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHcCCCcEE-EeecccccccccceEEEEEEcCcccHHHHHHHHHHHHc--CCCeEEEEeCchHHHHHHHHH
Q 012133 8 PSWVKKLSRKYLDNPLNI-DLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA--KGGKTIVFTQTKRDADEVSLA 84 (470)
Q Consensus 8 p~~i~~l~~~~l~~p~~i-~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~--~~~~~lVF~~t~~~~~~l~~~ 84 (470)
|.+|.++++.++++-..+ .+... -..+..| ..+..+.-.+.+.+++..+. ..+.+.|.|+|-.+|.++...
T Consensus 601 t~eI~efan~~l~d~~~~~p~~rs--ge~p~~i----~~~~ne~l~qr~~~ii~~mkk~~~etiaVi~kt~~d~~~~~d~ 674 (747)
T COG3973 601 TAEIDEFANSLLPDRFRIHPLTRS--GEKPAVI----MSVANEELVQRNPDIIPRMKKRGSETIAVICKTDHDCKAVMDS 674 (747)
T ss_pred hHHHHHHHHHhccCCCccchhhcC--CCCceee----eccchHHHHHhhHHHHHHHHhcCCCceEEECCcHHHHHHHHHH
Confidence 567888888888742222 11111 1111111 11222333344445554332 346899999999999999999
Q ss_pred HhcCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecC
Q 012133 85 LTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 141 (470)
Q Consensus 85 l~~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~ 141 (470)
|+..-. +..-.+.=+.|..+..-|.| -.+.||.+ ++||.||+
T Consensus 675 lre~~~---------~r~I~k~nq~f~~~~~vipv---y~aKGlEF---D~viv~d~ 716 (747)
T COG3973 675 LREKDS---------QRTIAKENQRFHHGSDVIPV---YDAKGLEF---DHVIVVDP 716 (747)
T ss_pred Hhhcch---------hhHHHhhcccccCCceEEEe---eeccccee---eeEEEecc
Confidence 974221 22222233455555433333 35688887 67777765
No 314
>KOG2560 consensus RNA splicing factor - Slu7p [RNA processing and modification]
Probab=36.58 E-value=8.8 Score=39.15 Aligned_cols=15 Identities=47% Similarity=1.156 Sum_probs=14.4
Q ss_pred ccccCCCCCccCCCC
Q 012133 454 ACFNCGKSGHRASEC 468 (470)
Q Consensus 454 ~c~~c~~~gh~~~~c 468 (470)
+|-|||.-+|-.+||
T Consensus 114 ACeNCGAmtHk~KDC 128 (529)
T KOG2560|consen 114 ACENCGAMTHKVKDC 128 (529)
T ss_pred hhhhhhhhhcchHHH
Confidence 499999999999999
No 315
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=36.47 E-value=52 Score=25.17 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=30.0
Q ss_pred cCCCeEEEEeCchHHHHHHHHHHhc-CCc-EEEEeCCCCH
Q 012133 63 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQ 100 (470)
Q Consensus 63 ~~~~~~lVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~~ 100 (470)
.+..++||||.+-..+..++..|.. ++. +..|.|++..
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~~ 93 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKE 93 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHHH
Confidence 3567999999998888888888874 555 8888888744
No 316
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=36.45 E-value=6.1e+02 Score=27.77 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=14.7
Q ss_pred CCcchhhHHhHhhhh-cCcCcCccccE
Q 012133 277 GFMSARSVMGFLSDV-YPTAADEIGKI 302 (470)
Q Consensus 277 ~~~~~~~v~~~l~~~-~~~~~~~Ig~I 302 (470)
..+.+++|.=+|++. ....-.+||+.
T Consensus 552 ~i~~aRqiAMYL~r~lt~~Sl~~IG~~ 578 (617)
T PRK14086 552 VLVTARQIAMYLCRELTDLSLPKIGQQ 578 (617)
T ss_pred ccchHHHHHHHHHHHHcCCCHHHHHHH
Confidence 345677776666554 34445556654
No 317
>TIGR02554 PrgH type III secretion system protein PrgH/EprH. In Samonella, this gene is part of a four-gene operon PrgHIJK and in general is found in type III secretion operons. PrgH has been shown to be required for secretion, as well as being a structural component of the needle complex.
Probab=36.31 E-value=4.8e+02 Score=26.71 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=65.1
Q ss_pred HHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhcCC
Q 012133 10 WVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII 89 (470)
Q Consensus 10 ~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~~ 89 (470)
.+..|..-+-.++..+.+....+. ..|+.+....-.+...+.|.......++.| .+-.++-+++...|...+
T Consensus 166 ~v~~L~~lL~g~~~p~~il~grDg-------~iyVla~~qrd~~W~~Q~Llk~~~~e~v~v-~~i~~~~~~i~~~L~~~~ 237 (389)
T TIGR02554 166 QLAELNGLLGGAPVRFAVLPGRDG-------RIYVAAASQRDAEWARQALLRAALPEKIEV-AVIGAERQRVSRWLDEAG 237 (389)
T ss_pred HHHHHHHHhcCCCCCeEEEeCCCC-------cEEEEEccccHhHHHHHHHhhcCCCCCeEE-echHHHHHHHHHHHHhhC
Confidence 455555555556666766543332 255666666666666666654434456655 445555568888887532
Q ss_pred ---------------cEEEEeC---CCCHHHHHHHHccccc-----CCeeEEEecc-----cccccCCCCCc
Q 012133 90 ---------------ASEALHG---DISQHQRERTLNGFRQ-----GKFTVLVATD-----VAARGLDIPNV 133 (470)
Q Consensus 90 ---------------~~~~lhg---~~~~~~R~~~~~~f~~-----g~~~iLVaTd-----v~~~Gidip~v 133 (470)
++..+++ .+++++++.+.+.++. -+++|...++ -|+.|+|=.+|
T Consensus 238 P~l~~~kv~l~~P~~Pvl~l~~q~~~~~~~~~~~l~~~l~~~~pya~~v~I~~~s~~~l~~~Ae~GL~~~ni 309 (389)
T TIGR02554 238 PQLAFYRLRLDAPRHPELWLSRQRNAAPAAARARLIGELRRLMPYARDVRIIDADDGAAEQQAENGLDKQAL 309 (389)
T ss_pred CcceEEEEEcCCCCCCEEEEecccCCCCHHHHHHHHHHHHHhCCccceeEEEEcCHHHHHHHHHhhHHhcCC
Confidence 3556777 4667777775555443 2344444443 34555554443
No 318
>PHA02653 RNA helicase NPH-II; Provisional
Probab=35.66 E-value=92 Score=34.40 Aligned_cols=68 Identities=9% Similarity=-0.017 Sum_probs=45.2
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc--------CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEE
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS--------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 136 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~--------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~V 136 (470)
..+++|-+||++.|.+++..+.+ +..+...+|+++...... ..+ ...|||+|.-+. -.++.++.+|
T Consensus 222 ~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t---~~k--~~~Ilv~T~~L~-l~~L~~v~~V 295 (675)
T PHA02653 222 ERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDELINT---NPK--PYGLVFSTHKLT-LNKLFDYGTV 295 (675)
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHHhhc---ccC--CCCEEEEeCccc-ccccccCCEE
Confidence 45899999999999998887753 234678899987422221 112 357999985321 1256678888
Q ss_pred EE
Q 012133 137 IH 138 (470)
Q Consensus 137 I~ 138 (470)
|.
T Consensus 296 VI 297 (675)
T PHA02653 296 II 297 (675)
T ss_pred Ec
Confidence 84
No 319
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.35 E-value=20 Score=37.00 Aligned_cols=20 Identities=25% Similarity=0.630 Sum_probs=17.2
Q ss_pred CCCccccCCCCCccCCCCCC
Q 012133 451 FGGACFNCGKSGHRASECPN 470 (470)
Q Consensus 451 ~g~~c~~c~~~gh~~~~c~~ 470 (470)
.+..|++|.++|||...||.
T Consensus 157 psy~c~rc~~~g~wikacpt 176 (448)
T KOG0314|consen 157 PSYKCVKCPTPGPWIKACPT 176 (448)
T ss_pred CCcceecCCCCCccceeccc
Confidence 44459999999999999994
No 320
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=35.05 E-value=85 Score=24.23 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=31.7
Q ss_pred HHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CC-cEEEEeCCC
Q 012133 56 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDI 98 (470)
Q Consensus 56 ~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~ 98 (470)
...+..+.+..++||+|.+-..+..++..|.. ++ .+..|.|++
T Consensus 47 ~~~~~~~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~ 91 (96)
T cd01444 47 DDWLGDLDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGF 91 (96)
T ss_pred HHHHhhcCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCH
Confidence 34444555678999999988888888888874 55 477777775
No 321
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=34.88 E-value=98 Score=26.69 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CC-cEEEEeCCCCHH
Q 012133 54 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDISQH 101 (470)
Q Consensus 54 ~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~~~~ 101 (470)
.|...+..+....++||+|.+-..+..++..|.. ++ .+..|.|++..-
T Consensus 38 ~l~~~l~~l~~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~aW 87 (145)
T cd01535 38 QLAQALEKLPAAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTAAW 87 (145)
T ss_pred HHHHHHHhcCCCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHHHH
Confidence 3445555555667999999998778778878874 44 789999997444
No 322
>COG1204 Superfamily II helicase [General function prediction only]
Probab=34.66 E-value=80 Score=35.44 Aligned_cols=93 Identities=26% Similarity=0.315 Sum_probs=60.0
Q ss_pred HHHHHHHHcC-CCeEEEEeCchHHHHHHHHHHh---c-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc----ccc
Q 012133 55 LSDLITVYAK-GGKTIVFTQTKRDADEVSLALT---S-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD----VAA 125 (470)
Q Consensus 55 l~~ll~~~~~-~~~~lVF~~t~~~~~~l~~~l~---~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd----v~~ 125 (470)
+..+++...+ +.++|-.||++..|++.++.++ . +++|..++|+++.... .+ ....|||+|. .+.
T Consensus 65 ~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~-~l------~~~~ViVtT~EK~Dsl~ 137 (766)
T COG1204 65 LLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDDE-RL------ARYDVIVTTPEKLDSLT 137 (766)
T ss_pred HHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccchh-hh------ccCCEEEEchHHhhHhh
Confidence 3344555544 4799999999999999999998 2 6899999999864431 11 2578999995 222
Q ss_pred ccC--CCCCccEEEEecC-----C---CChhHHHHHhcc
Q 012133 126 RGL--DIPNVDLIIHYEL-----P---NDPETFVHRSGR 154 (470)
Q Consensus 126 ~Gi--dip~v~~VI~~~~-----p---~~~~~y~qr~GR 154 (470)
|-- =+.+|++||.-++ + +..++.+.|.=|
T Consensus 138 R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~ 176 (766)
T COG1204 138 RKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRR 176 (766)
T ss_pred hcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHh
Confidence 221 2346777773221 1 245666666533
No 323
>PHA02558 uvsW UvsW helicase; Provisional
Probab=34.23 E-value=2e+02 Score=30.40 Aligned_cols=62 Identities=13% Similarity=0.122 Sum_probs=39.3
Q ss_pred CeEEEEeCchHHHHHHHHHHhcC-----CcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-ccc-cc-CCCCCccEEE
Q 012133 66 GKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATD-VAA-RG-LDIPNVDLII 137 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-v~~-~G-idip~v~~VI 137 (470)
.++||+++|++.+++.++.|.+. ..+..+.++.... ....|+|+|. .+. .. ..+.++.+||
T Consensus 159 ~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-----------~~~~I~VaT~qsl~~~~~~~~~~~~~iI 227 (501)
T PHA02558 159 GKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-----------TDAPIVVSTWQSAVKQPKEWFDQFGMVI 227 (501)
T ss_pred CeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-----------CCCCEEEeeHHHHhhchhhhccccCEEE
Confidence 49999999999999999988752 1233444443211 2468999993 222 11 1356777777
Q ss_pred E
Q 012133 138 H 138 (470)
Q Consensus 138 ~ 138 (470)
.
T Consensus 228 v 228 (501)
T PHA02558 228 V 228 (501)
T ss_pred E
Confidence 3
No 324
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=33.81 E-value=1.9e+02 Score=27.68 Aligned_cols=68 Identities=15% Similarity=0.230 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCCCeEEEEe-CchHHHHHHHHHHhcC---CcEEEEe-CCCCHHHHHHHHcccccCCeeEEE
Q 012133 52 RTILSDLITVYAKGGKTIVFT-QTKRDADEVSLALTSI---IASEALH-GDISQHQRERTLNGFRQGKFTVLV 119 (470)
Q Consensus 52 ~~~l~~ll~~~~~~~~~lVF~-~t~~~~~~l~~~l~~~---~~~~~lh-g~~~~~~R~~~~~~f~~g~~~iLV 119 (470)
.++...+++...++++-|-|. .+...+++.+..|+.. +.+...| |-.+..+.+.++++...-..+||+
T Consensus 94 ~Dl~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdil~ 166 (253)
T COG1922 94 TDLVEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPDILL 166 (253)
T ss_pred HHHHHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcCCCEEE
Confidence 456666666665554444444 5555667777778753 3455555 888888878888888776655554
No 325
>cd00188 TOPRIM Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA, type IIA and type IIB topoisomerases, bacterial DnaG-type primases, small primase-like proteins from bacteria and archaea, OLD family nucleases from bacterial and archaea, and bacterial DNA repair proteins of the RecR/M family. This domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases and in strand joining in topoisomerases and, as a general acid in strand cleavage by topisomerases and nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=32.94 E-value=1.2e+02 Score=21.93 Aligned_cols=60 Identities=23% Similarity=0.151 Sum_probs=35.7
Q ss_pred EEEEeCchHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccC
Q 012133 68 TIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 128 (470)
Q Consensus 68 ~lVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gi 128 (470)
.+|+|....++..+.+.......+..+.|.........+...++. ..+|++++|.-..|.
T Consensus 2 ~viivEg~~d~~~l~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~~~v~i~~D~D~~g~ 61 (83)
T cd00188 2 KLIIVEGPSDALALAQAGGYGGAVVALGGHALNKTRELLKRLLGE-AKEVIIATDADREGE 61 (83)
T ss_pred EEEEEecHHHHHHHHHHcCCCEEEEEEccEEcHHHHHHHHHHhcC-CCEEEEEcCCChhHH
Confidence 478888888888777776544556666666543223333333332 567888887544443
No 326
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=32.15 E-value=83 Score=27.43 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=26.8
Q ss_pred HHHHHHHH-HHcCCCeEEEEeCchHHHHHHHHHHhc
Q 012133 53 TILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTS 87 (470)
Q Consensus 53 ~~l~~ll~-~~~~~~~~lVF~~t~~~~~~l~~~l~~ 87 (470)
.+|.++++ .+....++||..||+..++++++.|+.
T Consensus 20 ~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~ 55 (148)
T PF07652_consen 20 RVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKG 55 (148)
T ss_dssp THHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTT
T ss_pred cccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhc
Confidence 45666664 456778999999999999999999973
No 327
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=31.91 E-value=4.8e+02 Score=25.19 Aligned_cols=81 Identities=22% Similarity=0.344 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHcCCCeEEEEeCch-HHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccc-c
Q 012133 51 KRTILSDLITVYAKGGKTIVFTQTK-RDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR-G 127 (470)
Q Consensus 51 k~~~l~~ll~~~~~~~~~lVF~~t~-~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~-G 127 (470)
..++|.+.+..+...+.+|||.+-+ +++++|++.+-- .-.-.++||.+..-.| . .|+.+++|-.+...+ =
T Consensus 165 N~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~-----~--~Gkk~~~ies~~s~eeL 237 (300)
T COG4152 165 NVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR-----S--FGKKRLVIESDLSLEEL 237 (300)
T ss_pred hHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH-----h--cCCceEEEeccCchHHH
Confidence 3567888887777789999999764 678888887752 2345667887522211 1 256778887665444 4
Q ss_pred CCCCCccEEEE
Q 012133 128 LDIPNVDLIIH 138 (470)
Q Consensus 128 idip~v~~VI~ 138 (470)
-++|.|-.+..
T Consensus 238 ~~ipgi~~~~~ 248 (300)
T COG4152 238 ANIPGILKITE 248 (300)
T ss_pred hcCCCceeeee
Confidence 45566554443
No 328
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=31.68 E-value=1.7e+02 Score=32.79 Aligned_cols=62 Identities=8% Similarity=0.092 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCC-----CCHHHHHHHHcccccCCeeEEEecc
Q 012133 54 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGD-----ISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 54 ~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~-----~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
++..++... .+..++|.+++...|.+.++.+.. ++.+..++++ +.+.+|..+. ...|+++|+
T Consensus 101 ~Lpa~l~aL-~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y------~~dIvygTp 172 (762)
T TIGR03714 101 TMPLYLNAL-TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIY------NSDIVYTTN 172 (762)
T ss_pred HHHHHHHhh-cCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhC------CCCEEEECc
Confidence 334344444 456799999999999988888753 4667666554 5566655442 368999997
No 329
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.43 E-value=1.8e+02 Score=25.57 Aligned_cols=73 Identities=19% Similarity=0.321 Sum_probs=47.4
Q ss_pred ccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHHHHHHHcc
Q 012133 133 VDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG 212 (470)
Q Consensus 133 v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~ 212 (470)
|+-|+.++.+..+.+|-|-+|-. -|+.+..+++ +..+++.+..
T Consensus 55 v~gv~~~g~~~~~PsYC~~CGkp------------------------------------yPWt~~~L~a-a~el~ee~ee 97 (158)
T PF10083_consen 55 VEGVFGLGGHYEAPSYCHNCGKP------------------------------------YPWTENALEA-ANELIEEDEE 97 (158)
T ss_pred cCCeeeeCCCCCCChhHHhCCCC------------------------------------CchHHHHHHH-HHHHHHHhhc
Confidence 44466667777788898888763 2455555544 3445556777
Q ss_pred cCccchhhhHHHHHHHHHhhCHHHHHHHHH
Q 012133 213 VHPESVEFFTPTAQRLIEEKGTDALAAALA 242 (470)
Q Consensus 213 ~~~~~~~~~~~~a~~l~~~~~~~~l~~al~ 242 (470)
+.++..+.|.+.+.+|+.+.+...+++..-
T Consensus 98 Ls~deke~~~~sl~dL~~d~PkT~vA~~rf 127 (158)
T PF10083_consen 98 LSPDEKEQFKESLPDLTKDTPKTKVAATRF 127 (158)
T ss_pred CCHHHHHHHHhhhHHHhhcCCccHHHHHHH
Confidence 777778888888888877765555544433
No 330
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=31.08 E-value=1.4e+02 Score=23.86 Aligned_cols=37 Identities=11% Similarity=0.001 Sum_probs=27.3
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-CCc--EEEEeCCCCH
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-IIA--SEALHGDISQ 100 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-~~~--~~~lhg~~~~ 100 (470)
++.+++|||.+-..+...+..|.. ++. +..|.|+|+.
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~ 104 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQG 104 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHH
Confidence 346899999887666667777764 663 7888998854
No 331
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=30.95 E-value=2.2e+02 Score=27.10 Aligned_cols=68 Identities=10% Similarity=0.155 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHcCCC-eEEEEeCchHHHHHHHHHHhcC--CcEE-EEeCCCCHHHHHHHHcccccCCeeEEE
Q 012133 52 RTILSDLITVYAKGG-KTIVFTQTKRDADEVSLALTSI--IASE-ALHGDISQHQRERTLNGFRQGKFTVLV 119 (470)
Q Consensus 52 ~~~l~~ll~~~~~~~-~~lVF~~t~~~~~~l~~~l~~~--~~~~-~lhg~~~~~~R~~~~~~f~~g~~~iLV 119 (470)
.+++..+++.....+ ++-++=.+...++++++.|++. +.+. ..||-..+++.+.+++..+....+||+
T Consensus 91 ~dl~~~ll~~~~~~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~ 162 (243)
T PRK03692 91 ADLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKIVT 162 (243)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 355556665443333 5555556666688888888753 4433 456777777777777777765554443
No 332
>PF02445 NadA: Quinolinate synthetase A protein; InterPro: IPR003473 Quinolinate synthetase catalyzes the second step of the de novo biosynthetic pathway of pyridine nucleotide formation. In particular, quinolinate synthetase is involved in the condensation of dihydroxyacetone phosphate and iminoaspartate to form quinolinic acid []. This synthesis requires two enzymes, an FAD-containing "B protein" and an "A protein".; GO: 0008987 quinolinate synthetase A activity, 0009435 NAD biosynthetic process; PDB: 2QS0_A 1WZU_A.
Probab=30.87 E-value=1.4e+02 Score=29.31 Aligned_cols=169 Identities=14% Similarity=0.211 Sum_probs=73.3
Q ss_pred HHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhcC
Q 012133 9 SWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI 88 (470)
Q Consensus 9 ~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~ 88 (470)
..++.+.++| .+...|..+...-.. +. +--+.|.+.+-.. +++.+ +.++-|+|+|-+.....+++.+.+.
T Consensus 89 ~~v~~~k~~~-p~~~vV~YVNssAev--KA--~sdi~cTSsNA~k----Iv~~l-~~~~~IlF~PD~nLG~~v~~~~~k~ 158 (296)
T PF02445_consen 89 EDVRELKEEY-PDAAVVTYVNSSAEV--KA--ESDICCTSSNAVK----IVRSL-PQDKKILFLPDKNLGRYVARQTGKN 158 (296)
T ss_dssp HHHHHHHHHS-TTS-EEEESSS-HHH--HT--T-SEEE-TTTHHH----HHHCS-S-SE-EEEES-HHHHHHHHHHH--E
T ss_pred HHHHHHHHHC-CCCeEEEEecChHHH--Hc--cCCeEEECccHHH----HHHHh-cCCCeEEEcCcHHHHHHHHHhhCCe
Confidence 4455555555 555566554322111 11 1122344444443 34443 4456699999999999998888542
Q ss_pred ----CcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCC----------ChhHHHHHhcc
Q 012133 89 ----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN----------DPETFVHRSGR 154 (470)
Q Consensus 89 ----~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~----------~~~~y~qr~GR 154 (470)
-...++|-.++.++-+.+.+++ |++.+++|-..|. |....+..+-.
T Consensus 159 ii~w~G~C~VH~~f~~~~i~~~r~~~--------------------P~a~vlvHPEC~~ev~~~AD~vGSTs~ii~~v~~ 218 (296)
T PF02445_consen 159 IILWPGYCPVHERFTPEDIEKAREKH--------------------PDAKVLVHPECPPEVVELADFVGSTSGIIKYVKE 218 (296)
T ss_dssp EEESSSS--TGGG--HHHHHHHHCCS--------------------TTSEEEE-TTS-HHHHCT-SEE--HHHHHHHCCG
T ss_pred EEEECCCcccccccCHHHHHHHHHHC--------------------cCCEEEECCCCCHHHHHHhhhcCCHHHHHHHHHh
Confidence 2356678888777766555543 4455555444333 33333333322
Q ss_pred cCCCCCCCeEEEeeChhhHHHHHHHHHHhCC-CccccC-CCCHHHHHHHHHHHHHHHHcccC
Q 012133 155 TGRAGKEGTAILMFTSSQRRTVRSLERDVGC-KFEFVS-PPVVEDVLESSAEQVVATLNGVH 214 (470)
Q Consensus 155 ~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~-~~~~~~-~p~~~~~~~~~~~~~~~~l~~~~ 214 (470)
. ..+ .+++. +|...+.+|.+...- +|-... ...-..+....++.+...|....
T Consensus 219 ~----~~~-~~iIg--TE~gl~~~L~~~~p~k~f~~~~~~~~C~~Mk~~tl~~l~~~L~~~~ 273 (296)
T PF02445_consen 219 S----PAK-EFIIG--TEIGLVHRLKKENPDKEFIPLSPCAICPNMKKITLEKLLDALENLE 273 (296)
T ss_dssp -----S---EEEEE--S-CHHHHHHHHH-TTSEEEETTTTSSSTT-----HHHHHHHHHHT-
T ss_pred C----CCC-eEEEE--ecchHHHHHHHHCCCcEEEeCCCCCcCcCccccCHHHHHHHHhcCC
Confidence 1 222 44444 345667777666532 222211 11124455555666666665544
No 333
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=30.49 E-value=91 Score=35.76 Aligned_cols=57 Identities=19% Similarity=0.162 Sum_probs=46.6
Q ss_pred CeEEEEeCchHHHHHHHHHH-hcCCcEEEEeCCCCHHHHHHHHcccccC--CeeEEEecc
Q 012133 66 GKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQG--KFTVLVATD 122 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l-~~~~~~~~lhg~~~~~~R~~~~~~f~~g--~~~iLVaTd 122 (470)
+-+||..|=....+.....| ...+.+..||+.++..+|..+++.++++ .++||-.|+
T Consensus 305 gitvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtP 364 (941)
T KOG0351|consen 305 GVTVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTP 364 (941)
T ss_pred CceEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCH
Confidence 34666777776666555555 4589999999999999999999999999 899998886
No 334
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=29.46 E-value=2.2e+02 Score=21.05 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=27.8
Q ss_pred cCCCeEEEEeCchHHHHHHHHHHhc-C-CcEEEEeCCC
Q 012133 63 AKGGKTIVFTQTKRDADEVSLALTS-I-IASEALHGDI 98 (470)
Q Consensus 63 ~~~~~~lVF~~t~~~~~~l~~~l~~-~-~~~~~lhg~~ 98 (470)
.+..++||+|.....+..++..|.. + ..+..|-|++
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~ 85 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGM 85 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCCh
Confidence 4668999999998888888888885 3 4566777765
No 335
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=29.23 E-value=1.5e+02 Score=23.25 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=28.1
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-CC-cEEEEeCCCCH
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDISQ 100 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~~~ 100 (470)
++.+++|||++-..+...+..|.+ ++ .+..|.|++..
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~ 95 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDA 95 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHH
Confidence 467999999997777777777764 55 47788888654
No 336
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=29.17 E-value=2.4e+02 Score=32.18 Aligned_cols=65 Identities=9% Similarity=-0.009 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc
Q 012133 52 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 123 (470)
Q Consensus 52 ~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv 123 (470)
..+|..++... .+..+-|.++|.-.|.+=++.+.. ++.+.++.+++++++|..++. ++|+++|..
T Consensus 111 vA~l~a~l~al-~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~------~dI~YGT~~ 180 (913)
T PRK13103 111 VGTLAVYLNAL-SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA------ADITYGTNN 180 (913)
T ss_pred HHHHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc------CCEEEEccc
Confidence 34445555555 567888889997777766666653 578999999999999998886 688888864
No 337
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=28.61 E-value=1e+02 Score=24.02 Aligned_cols=37 Identities=14% Similarity=0.027 Sum_probs=28.0
Q ss_pred cCCCeEEEEeCchHHHHHHHHHHhc-CC-cEEEEeCCCC
Q 012133 63 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 99 (470)
Q Consensus 63 ~~~~~~lVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~~ 99 (470)
.++.++||+|.+-..+...+..|.. ++ .+..|.|+|.
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 4567899999997777777777764 55 5788888763
No 338
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=28.18 E-value=70 Score=26.43 Aligned_cols=39 Identities=13% Similarity=0.145 Sum_probs=30.6
Q ss_pred cCCCeEEEEeCchHHHHHHHHHHhc-CC--cEEEEeCCCCHH
Q 012133 63 AKGGKTIVFTQTKRDADEVSLALTS-II--ASEALHGDISQH 101 (470)
Q Consensus 63 ~~~~~~lVF~~t~~~~~~l~~~l~~-~~--~~~~lhg~~~~~ 101 (470)
..+.+++|||.+-..+...+..|.. ++ .+..+.|++..-
T Consensus 70 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W 111 (122)
T cd01526 70 DKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAW 111 (122)
T ss_pred CCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHHH
Confidence 4567899999987778888888875 67 588999998443
No 339
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=27.78 E-value=3.9e+02 Score=25.15 Aligned_cols=83 Identities=12% Similarity=0.157 Sum_probs=56.2
Q ss_pred CCCeEEEEeCc-----------hHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccC----CeeEEEeccccccc
Q 012133 64 KGGKTIVFTQT-----------KRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG----KFTVLVATDVAARG 127 (470)
Q Consensus 64 ~~~~~lVF~~t-----------~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g----~~~iLVaTdv~~~G 127 (470)
+.+.+||+.+. ..+++.|++.|++ +|.| .++-+++..+-+++++.|.+. ...++|+. +++-|
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V-~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~-~~sHG 84 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEV-HVKNNLTAEEMLEELKEFAERPEHSDSDSFVCV-LLSHG 84 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHhccccCCCCEEEEE-EcCCC
Confidence 45678888875 4589999999986 6765 467889999999999888752 23444444 66667
Q ss_pred CCCCCccEEEEecC-CCChhHHHHHh
Q 012133 128 LDIPNVDLIIHYEL-PNDPETFVHRS 152 (470)
Q Consensus 128 idip~v~~VI~~~~-p~~~~~y~qr~ 152 (470)
. .++|+-.|- +.+.+.+....
T Consensus 85 ~----~~~l~~~D~~~v~l~~i~~~f 106 (241)
T smart00115 85 E----EGGIYGTDHSPLPLDEIFSLF 106 (241)
T ss_pred C----CCeEEEecCCEEEHHHHHHhc
Confidence 3 256665553 44555555554
No 340
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=27.33 E-value=62 Score=20.89 Aligned_cols=16 Identities=38% Similarity=0.690 Sum_probs=13.5
Q ss_pred eEee-cCHHHHHHHHhh
Q 012133 313 AVFD-LPEEIAKELLNK 328 (470)
Q Consensus 313 a~fd-v~~~~a~~i~~~ 328 (470)
.+|| +|.+.+++|+.+
T Consensus 17 ~Vfd~v~~~Ka~~im~l 33 (36)
T PF06200_consen 17 CVFDDVPPDKAQEIMLL 33 (36)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 5677 999999999875
No 341
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=27.18 E-value=5.9e+02 Score=24.72 Aligned_cols=87 Identities=11% Similarity=0.035 Sum_probs=56.8
Q ss_pred cCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccccc
Q 012133 46 TTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 125 (470)
Q Consensus 46 ~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~ 125 (470)
.|-.+-.++-.+.++.+. .--+|+|..+.....|-..+.-.-+...+|-.-.++....+++....|+. |.+.||..-
T Consensus 7 TPIGNl~Dit~Ral~~L~--~~d~i~~EDTR~t~kLL~~~~I~~~~~~~~~hn~~~~~~~l~~~l~~g~~-valvSDAG~ 83 (276)
T TIGR00096 7 TPIGNLEDITRRALELLA--CVDLFAEEDTRTSKLLLHLGIIATPKAFHIDNEFQEKQNLLAAKLEIGNN-IAVSSDAGP 83 (276)
T ss_pred CCCcCHHHHhHHHHHHHH--hCCEEEecCchhHHHHHHhcCCCCceEEEecccHhHHHHHHHHHHHcCCc-EEEEecCCC
Confidence 343444444455555542 34489998888888877777533345566666556666777777777764 888889887
Q ss_pred ccCCCCCccE
Q 012133 126 RGLDIPNVDL 135 (470)
Q Consensus 126 ~Gidip~v~~ 135 (470)
=+|.-|.-.+
T Consensus 84 P~ISDPG~~L 93 (276)
T TIGR00096 84 PLISDPGHLL 93 (276)
T ss_pred CCcCCccHHH
Confidence 7777776543
No 342
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=27.16 E-value=2.3e+02 Score=32.29 Aligned_cols=63 Identities=11% Similarity=0.077 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 53 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 53 ~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
.+|..+++.+ ....+.|.+++...|.+.++.+.. ++.|.++.+++++.+|.... ...|+++|+
T Consensus 112 a~lp~~l~al-~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~~~Y------~~dI~YgT~ 179 (908)
T PRK13107 112 ATLPAYLNAL-TGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKKAAY------NADITYGTN 179 (908)
T ss_pred HHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHhcC------CCCeEEeCC
Confidence 3444455555 456799999999999988887763 57899999999987665543 358888886
No 343
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=26.97 E-value=9.1e+02 Score=26.86 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=47.3
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc-CC-------cEEEEeCCCCHHHHHHHHcccc----cCCeeEEEec--ccccccCCC
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS-II-------ASEALHGDISQHQRERTLNGFR----QGKFTVLVAT--DVAARGLDI 130 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~-~~-------~~~~lhg~~~~~~R~~~~~~f~----~g~~~iLVaT--dv~~~Gidi 130 (470)
++-++||+++.+-..++.+.+.+ ++ +.+.+-..-+ -+.+++.|. .+.-.||+|. --+++|||+
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 47899999999988888888874 21 1122222222 234555554 3444566554 578899999
Q ss_pred CC--ccEEEEecCCC
Q 012133 131 PN--VDLIIHYELPN 143 (470)
Q Consensus 131 p~--v~~VI~~~~p~ 143 (470)
.| ...||..++|.
T Consensus 706 ~D~LgRaVvvVGlPy 720 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPY 720 (821)
T ss_pred ccccccEEEEeecCC
Confidence 75 34677777663
No 344
>PRK01415 hypothetical protein; Validated
Probab=26.78 E-value=1.1e+02 Score=29.31 Aligned_cols=40 Identities=23% Similarity=0.132 Sum_probs=32.3
Q ss_pred cCCCeEEEEeCchHHHHHHHHHHhc-CCc-EEEEeCCCCHHH
Q 012133 63 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQHQ 102 (470)
Q Consensus 63 ~~~~~~lVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~~~~ 102 (470)
.++.++++||.+=..++..+..|.+ ++. +..|.|++..-.
T Consensus 169 ~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~ 210 (247)
T PRK01415 169 LKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQYL 210 (247)
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHHH
Confidence 4668999999998889999998874 664 888999975543
No 345
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=26.47 E-value=1.4e+02 Score=23.77 Aligned_cols=46 Identities=9% Similarity=0.076 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCc-EEEEeCCCCH
Q 012133 55 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQ 100 (470)
Q Consensus 55 l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~~ 100 (470)
+...+..+..+.+++|+|.+-..+...+..|.. ++. +..+.|++..
T Consensus 48 l~~~~~~~~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T PRK00162 48 LGAFMRQADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEA 95 (108)
T ss_pred HHHHHHhcCCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHH
Confidence 344444455677899999887777777777764 554 7788888744
No 346
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=26.40 E-value=2.4e+02 Score=32.57 Aligned_cols=70 Identities=17% Similarity=0.187 Sum_probs=53.3
Q ss_pred CeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCC--CCC--------eEEEeeChhhHHHHHHHHHHh
Q 012133 114 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG--KEG--------TAILMFTSSQRRTVRSLERDV 183 (470)
Q Consensus 114 ~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g--~~g--------~~i~l~~~~~~~~~~~i~~~~ 183 (470)
..+.|++-.++.+|.|-|+|-.++-..-..+...-.|.+||.-|.- +.| .-.++++..+..+.+.|.+.+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 6889999999999999999988888887778888899999988832 222 223345556666676666665
No 347
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=26.15 E-value=1.3e+02 Score=25.10 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=28.4
Q ss_pred HcCCCeEEEEeC-chHHHHHHHHHHhc-CCcEEEEeCCCCH
Q 012133 62 YAKGGKTIVFTQ-TKRDADEVSLALTS-IIASEALHGDISQ 100 (470)
Q Consensus 62 ~~~~~~~lVF~~-t~~~~~~l~~~l~~-~~~~~~lhg~~~~ 100 (470)
+.++.++||||. +-..+..++..|.. ++.+..|.|++..
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~a 123 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYKA 123 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHHH
Confidence 345679999996 44456666677764 7789999999754
No 348
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=26.07 E-value=1.7e+02 Score=26.88 Aligned_cols=34 Identities=6% Similarity=0.130 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc
Q 012133 52 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 87 (470)
Q Consensus 52 ~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~ 87 (470)
+....+++..+. ++-|+|+.|+..+..+.+...+
T Consensus 49 L~~A~~~i~~i~--~~~ILfVgtk~~~~~~V~~~A~ 82 (196)
T TIGR01012 49 LRVAAKFLVRIE--PEDILVVSARIYGQKPVLKFAK 82 (196)
T ss_pred HHHHHHHHHHhh--CCeEEEEecCHHHHHHHHHHHH
Confidence 333444555554 6678899998888777666653
No 349
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=26.01 E-value=1.7e+02 Score=22.57 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=34.0
Q ss_pred EEEEeCchHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc
Q 012133 68 TIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 123 (470)
Q Consensus 68 ~lVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv 123 (470)
.+|.|..+.++..|.+..-. ..+...+|.....+..+.+.+. ...|+|+||-
T Consensus 3 ~vIiVEG~~D~~~l~~~g~~-~~~i~t~Gt~~~~~~~~~l~~~---~~~VIiltD~ 54 (81)
T cd01027 3 EVIIVEGKNDTESLKKLGIE-AEIIETNGSIINKETIELIKKA---YRGVIILTDP 54 (81)
T ss_pred eEEEEEchHHHHHHHHhCCC-ccEEEECCCcCCHHHHHHHHHh---CCEEEEEECC
Confidence 46778888888887777632 3566667665554555555554 4578888884
No 350
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=25.98 E-value=5.3e+02 Score=23.86 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHccc
Q 012133 52 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGF 110 (470)
Q Consensus 52 ~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f 110 (470)
.+.+..++....+-..+.||++.. .+++.+.+.. .+.+.-|||+.+++.-.++-...
T Consensus 40 ~~~a~~i~~~v~~~~~VgVf~n~~--~~~i~~i~~~~~ld~VQlHG~e~~~~~~~l~~~~ 97 (208)
T COG0135 40 PEQAREIASAVPKVKVVGVFVNES--IEEILEIAEELGLDAVQLHGDEDPEYIDQLKEEL 97 (208)
T ss_pred HHHHHHHHHhCCCCCEEEEECCCC--HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhc
Confidence 444555655543235789999764 3445555553 57899999999998766665554
No 351
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=25.86 E-value=93 Score=35.49 Aligned_cols=70 Identities=17% Similarity=0.187 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 52 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 52 ~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
+.++..++......++-||.+|+-....- ...+.+ .-.+..+...=++.+|.......+.++++||++|-
T Consensus 431 IsLitYLmE~K~~~GP~LvivPlstL~NW-~~Ef~kWaPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTty 501 (1157)
T KOG0386|consen 431 ISLITYLMEHKQMQGPFLIIVPLSTLVNW-SSEFPKWAPSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTY 501 (1157)
T ss_pred HHHHHHHHHHcccCCCeEEeccccccCCc-hhhccccccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeH
Confidence 34455555555556888888887543221 122222 12345555555689999999999999999999994
No 352
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=25.81 E-value=2.1e+02 Score=33.09 Aligned_cols=113 Identities=20% Similarity=0.177 Sum_probs=66.7
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc----ccccc-CC----C
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD----VAARG-LD----I 130 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd----v~~~G-id----i 130 (470)
+-|+|-.+|+++.|.++++.+.+ ++.|..|.|++.-.. .++. +.+|||+|+ ++.|- .+ +
T Consensus 164 ~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~-tei~------~tqiiVTTPEKwDvvTRk~~~d~~l~ 236 (1230)
T KOG0952|consen 164 DFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTK-TEIA------DTQIIVTTPEKWDVVTRKSVGDSALF 236 (1230)
T ss_pred CceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhhH-HHHH------hcCEEEecccceeeeeeeeccchhhh
Confidence 45888889999999999998874 467999999985443 3343 479999996 44432 21 3
Q ss_pred CCccEEEEecC-------CCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCC
Q 012133 131 PNVDLIIHYEL-------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 185 (470)
Q Consensus 131 p~v~~VI~~~~-------p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~ 185 (470)
..|.+||.-.+ =..+++++-|.=|---..+...-|+=++. ....+..+.+.++.
T Consensus 237 ~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSA-TlPN~eDvA~fL~v 297 (1230)
T KOG0952|consen 237 SLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSA-TLPNYEDVARFLRV 297 (1230)
T ss_pred hheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeec-cCCCHHHHHHHhcC
Confidence 45666663221 12466776665543223333333333322 22334445555544
No 353
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=25.77 E-value=1.5e+02 Score=23.86 Aligned_cols=45 Identities=20% Similarity=0.135 Sum_probs=30.5
Q ss_pred HHHHHHHHH--cCCCeEEEEeCchHHHHHHHHHHhc-CC-cEEEEeCCC
Q 012133 54 ILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDI 98 (470)
Q Consensus 54 ~l~~ll~~~--~~~~~~lVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~ 98 (470)
.+..++... .++.++||||++-..+..++..|.. ++ .+..|.|++
T Consensus 65 ~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 113 (118)
T cd01449 65 ELRALFAALGITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW 113 (118)
T ss_pred HHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH
Confidence 344444433 2567899999987777778877764 55 477777776
No 354
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=24.63 E-value=8.8e+02 Score=25.91 Aligned_cols=155 Identities=16% Similarity=0.150 Sum_probs=75.5
Q ss_pred EEEEeCchHHHHHHHHHHhcCCc--EEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCC-C
Q 012133 68 TIVFTQTKRDADEVSLALTSIIA--SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN-D 144 (470)
Q Consensus 68 ~lVF~~t~~~~~~l~~~l~~~~~--~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~-~ 144 (470)
-|||++|.-.+-+.+..+-+.-. ...+|- ..+-..++..|.+..++.||.||- +|=+-+-|.- |-=..+|- .
T Consensus 115 PIvYTPTvG~acq~y~~i~r~p~Glfisi~D---~Ghi~~~l~nWp~~~V~~IvVTDG-erILGLGDlG-~~GmgIpvgK 189 (582)
T KOG1257|consen 115 PIVYTPTVGLACQQYGLIFRRPQGLFISIKD---KGHIKQVLKNWPERNVKAIVVTDG-ERILGLGDLG-VNGMGIPVGK 189 (582)
T ss_pred CeeecCcHHHHHHHhhhhhccCceeEEEecc---cchHHHHHHhCCccceeEEEEeCC-Cceecccccc-cCcccceecH
Confidence 39999999888777776653221 122221 145567888888888999999982 1111111110 00012222 2
Q ss_pred hhHHHHHhcccCCCCCCCeEEEeeCh--hhHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHHHHHHHcccCccchhhh-
Q 012133 145 PETFVHRSGRTGRAGKEGTAILMFTS--SQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFF- 221 (470)
Q Consensus 145 ~~~y~qr~GR~gR~g~~g~~i~l~~~--~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 221 (470)
...|.--.|= ++..|.-++.+ .+-+.+.+=.-+++.+..++.-+.-.+.+++..+.+.+..-...--..|.|
T Consensus 190 L~Lyta~~GI-----~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG~~~lIqFEDF~ 264 (582)
T KOG1257|consen 190 LALYTALGGI-----RPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYGPNTLIQFEDFA 264 (582)
T ss_pred HHHHHHhcCC-----ChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHhCcceEEEehhcc
Confidence 3333333221 34444333221 222223332344566666666666666666666655554411111112222
Q ss_pred HHHHHHHHHhh
Q 012133 222 TPTAQRLIEEK 232 (470)
Q Consensus 222 ~~~a~~l~~~~ 232 (470)
..-|.++|++.
T Consensus 265 ~~nAfrlL~kY 275 (582)
T KOG1257|consen 265 NHNAFRLLEKY 275 (582)
T ss_pred chhHHHHHHHh
Confidence 23366777764
No 355
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=24.58 E-value=2.3e+02 Score=28.22 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=21.5
Q ss_pred HHHHHHcCCCeEEEEeCchHHHHHHHHHHhc
Q 012133 57 DLITVYAKGGKTIVFTQTKRDADEVSLALTS 87 (470)
Q Consensus 57 ~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~ 87 (470)
+++......+..|+|+.|+..+..+.+...+
T Consensus 50 ~~i~~~~~~gg~iLfVgTk~~~~~~V~~~A~ 80 (326)
T PRK12311 50 QAVSDTVAKGGRVLFVGTKRQAQDAVADAAK 80 (326)
T ss_pred HHHHHHHhCCCEEEEEeCcHHHHHHHHHHHH
Confidence 3444444567889999999888777666653
No 356
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=24.54 E-value=1.1e+02 Score=23.89 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=28.8
Q ss_pred cCCCeEEEEeCchHHHHHHHHHHhc-CC-cEEEEeCCCCH
Q 012133 63 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDISQ 100 (470)
Q Consensus 63 ~~~~~~lVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~~~ 100 (470)
..+.+++|+|++-..+...+..|.+ ++ .+..++|++..
T Consensus 52 ~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~~ 91 (99)
T cd01527 52 VGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDA 91 (99)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHHH
Confidence 4567999999997777778888864 44 57788998643
No 357
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=24.18 E-value=6e+02 Score=23.82 Aligned_cols=84 Identities=11% Similarity=0.152 Sum_probs=56.9
Q ss_pred CCCeEEEEeCc------------hHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHccccc---CCeeEEEeccccccc
Q 012133 64 KGGKTIVFTQT------------KRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ---GKFTVLVATDVAARG 127 (470)
Q Consensus 64 ~~~~~lVF~~t------------~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~---g~~~iLVaTdv~~~G 127 (470)
+.+.+||+.+. ..+++.|++.|++ +|.| .++-+++..+-.++++.|.+ ....++|+. +++-|
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V-~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~-~~sHG 85 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEV-EVKNNLTAEEILEELKEFASPDHSDSDSFVCV-ILSHG 85 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEE-EEeCCCCHHHHHHHHHHHHhccCCCCCeeEEE-ECCCC
Confidence 34567777763 4679999999986 6766 46788999988888888874 223333333 56667
Q ss_pred CCCCCccEEEEec-CCCChhHHHHHhc
Q 012133 128 LDIPNVDLIIHYE-LPNDPETFVHRSG 153 (470)
Q Consensus 128 idip~v~~VI~~~-~p~~~~~y~qr~G 153 (470)
.. +.|+-.| .+.+.+.+++...
T Consensus 86 ~~----~~l~~~D~~~v~l~~i~~~f~ 108 (243)
T cd00032 86 EE----GGIYGTDGDVVPIDEITSLFN 108 (243)
T ss_pred CC----CEEEEecCcEEEHHHHHHhhc
Confidence 54 6666666 5556777777664
No 358
>COG5179 TAF1 Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=23.92 E-value=36 Score=36.31 Aligned_cols=16 Identities=50% Similarity=1.227 Sum_probs=13.5
Q ss_pred ccccCCCCCccC--CCCC
Q 012133 454 ACFNCGKSGHRA--SECP 469 (470)
Q Consensus 454 ~c~~c~~~gh~~--~~c~ 469 (470)
-|-+|||.|||- .-||
T Consensus 939 ~C~nCGQvGHmkTNK~CP 956 (968)
T COG5179 939 TCGNCGQVGHMKTNKACP 956 (968)
T ss_pred ecccccccccccccccCc
Confidence 499999999995 4577
No 359
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=23.74 E-value=1.6e+02 Score=30.45 Aligned_cols=9 Identities=22% Similarity=0.298 Sum_probs=5.0
Q ss_pred eEEEecccc
Q 012133 116 TVLVATDVA 124 (470)
Q Consensus 116 ~iLVaTdv~ 124 (470)
...|.+|++
T Consensus 122 ~yfVlNDiF 130 (419)
T KOG0116|consen 122 GYFVLNDIF 130 (419)
T ss_pred ceEEEechh
Confidence 455666653
No 360
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=23.43 E-value=2.9e+02 Score=30.42 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEE
Q 012133 54 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEAL 94 (470)
Q Consensus 54 ~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~l 94 (470)
++.++++. ..+++||..++.-.+++|++.+.+ ++++.-|
T Consensus 445 IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~tgLKVvRl 484 (935)
T KOG1802|consen 445 IVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKTGLKVVRL 484 (935)
T ss_pred HHHHHHHh--cCCceEEEcccchhHHHHHHHHHhcCceEeee
Confidence 34444444 358999999999999999999975 5555443
No 361
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=22.60 E-value=2.8e+02 Score=22.70 Aligned_cols=48 Identities=6% Similarity=0.043 Sum_probs=24.3
Q ss_pred cceEEEEEEcCcccH-HHHHHHHHHHHc-CCCeEEEEeCchHHHHHHHHH
Q 012133 37 EGIKLYAISTTATSK-RTILSDLITVYA-KGGKTIVFTQTKRDADEVSLA 84 (470)
Q Consensus 37 ~~i~~~~~~~~~~~k-~~~l~~ll~~~~-~~~~~lVF~~t~~~~~~l~~~ 84 (470)
..+.++++.+..... .+.+..+.+.+. .++++|+||.|-..+-.|+.+
T Consensus 56 ~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 56 LGLQYVHIPVDGGAITEEDVEAFADALESLPKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp CT-EEEE----TTT--HHHHHHHHHHHHTTTTSEEEE-SCSHHHHHHHHH
T ss_pred cCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEECCCChhHHHHHHH
Confidence 356777777665432 233333333332 357999999998877766554
No 362
>PRK06739 pyruvate kinase; Validated
Probab=22.52 E-value=4.5e+02 Score=26.51 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=23.6
Q ss_pred HHHHHHHHcccccCCeeEEEecccccccCCCC
Q 012133 100 QHQRERTLNGFRQGKFTVLVATDVAARGLDIP 131 (470)
Q Consensus 100 ~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip 131 (470)
+..|+++++.-+.....|++||++++.=+.-|
T Consensus 250 p~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p 281 (352)
T PRK06739 250 PLLQKMMIQECNRTNTYVITATQMLQSMVDHS 281 (352)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcchHHhhccCC
Confidence 34566777777777779999999988665543
No 363
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=22.42 E-value=2.4e+02 Score=27.10 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=40.4
Q ss_pred CCeEEEEeCchHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 65 GGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
..-+|+|++.....+.+...++.+..+.+-.-+++.++.+++.+.-+...+.|+++.+
T Consensus 69 ~DvVIdfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~N 126 (266)
T TIGR00036 69 PDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPN 126 (266)
T ss_pred CCEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECc
Confidence 3567778877777777777777777777655578888777777665655567777654
No 364
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=22.34 E-value=4.9e+02 Score=27.31 Aligned_cols=6 Identities=50% Similarity=0.711 Sum_probs=2.8
Q ss_pred CCCCCC
Q 012133 356 GRFSSR 361 (470)
Q Consensus 356 g~~~~~ 361 (470)
|+|.+.
T Consensus 112 GGFrsY 117 (492)
T PF06273_consen 112 GGFRSY 117 (492)
T ss_pred Cccccc
Confidence 445544
No 365
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=22.31 E-value=1.8e+02 Score=23.64 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=27.4
Q ss_pred cCCCeEEEEeCc-hHHHHHHHHHHhc-CCc-EEEEeCCCCH
Q 012133 63 AKGGKTIVFTQT-KRDADEVSLALTS-IIA-SEALHGDISQ 100 (470)
Q Consensus 63 ~~~~~~lVF~~t-~~~~~~l~~~l~~-~~~-~~~lhg~~~~ 100 (470)
.++.++||||.+ -..+..++..|.. ++. +..|-|++..
T Consensus 77 ~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~ 117 (122)
T cd01448 77 SNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQA 117 (122)
T ss_pred CCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHH
Confidence 356789999988 4677777777764 554 7788888743
No 366
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=22.09 E-value=4.1e+02 Score=24.06 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhcC-----CcEEEEeCCCCHH
Q 012133 54 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQH 101 (470)
Q Consensus 54 ~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~ 101 (470)
....++......+.-|.|+.|+.....+.+.+.+. +.-..+.|-++..
T Consensus 44 ~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~~~~~i~~rw~~G~LTN~ 96 (193)
T cd01425 44 LALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERTGSFYVNGRWLGGTLTNW 96 (193)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCeeecCeecCCcCCCH
Confidence 33444444445567788888887777766665532 1223455666544
No 367
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=22.02 E-value=2.6e+02 Score=24.89 Aligned_cols=76 Identities=9% Similarity=0.138 Sum_probs=43.7
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCC---CCCccEEEEe
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLD---IPNVDLIIHY 139 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gid---ip~v~~VI~~ 139 (470)
.+.+++|.=...-....++..|.+ +..+..++-.. ++..+.+. +.+|+|++--...=|+ ++.-.+||+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--~~l~~~l~-----~aDiVIsat~~~~ii~~~~~~~~~viIDl 115 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--KNLKEHTK-----QADIVIVAVGKPGLVKGDMVKPGAVVIDV 115 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--hhHHHHHh-----hCCEEEEcCCCCceecHHHccCCeEEEEc
Confidence 345667766654445558888864 55666676653 23333333 3566654432222233 3334589999
Q ss_pred cCCCChh
Q 012133 140 ELPNDPE 146 (470)
Q Consensus 140 ~~p~~~~ 146 (470)
..|.+++
T Consensus 116 a~prdvd 122 (168)
T cd01080 116 GINRVPD 122 (168)
T ss_pred cCCCccc
Confidence 9999887
No 368
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=21.60 E-value=1.6e+02 Score=28.08 Aligned_cols=65 Identities=15% Similarity=0.261 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhcCCcEEE-----EeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 51 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-----LHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 51 k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~~~~~~-----lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
++....++|..+..++. |+|+.|+..+..+...+.....+.+ +.|-++... ...|+ ..++||.||
T Consensus 57 ~L~~Aa~~i~~i~~~~~-Il~Vstr~~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~----~~~f~--~P~llIV~D 126 (249)
T PTZ00254 57 KLKLAARVIAAIENPAD-VVVVSSRPYGQRAVLKFAQYTGASAIAGRFTPGTFTNQI----QKKFM--EPRLLIVTD 126 (249)
T ss_pred HHHHHHHHHHHHhCCCc-EEEEEcCHHHHHHHHHHHHHhCCeEECCcccCCCCCCcc----ccccC--CCCEEEEeC
Confidence 34444445555544444 5688888877766666554222222 334343321 23443 455677776
No 369
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=20.59 E-value=5.9e+02 Score=24.83 Aligned_cols=62 Identities=11% Similarity=0.057 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhcCC-cEEEEeCCCCHHHHHHHHcccccCC
Q 012133 52 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII-ASEALHGDISQHQRERTLNGFRQGK 114 (470)
Q Consensus 52 ~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~~-~~~~lhg~~~~~~R~~~~~~f~~g~ 114 (470)
.+.+.+.++.. .-.-.|||++-...++.+.+.+...+ .+.++.-++|..+-.++.+..++..
T Consensus 54 f~tV~EA~~~~-~a~~svI~Vp~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g 116 (293)
T COG0074 54 FNTVEEAVKET-GANASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKG 116 (293)
T ss_pred HHHHHHHHHhh-CCCEEEEecCcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 45556666555 44678999999999999999998754 5788889999988887777776544
No 370
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=20.56 E-value=3.6e+02 Score=30.67 Aligned_cols=84 Identities=21% Similarity=0.161 Sum_probs=50.4
Q ss_pred ccHHHHHHH-HHHHHcCCCeEEEEeCchHHHHHHHHHHhcC------CcEEEEeCCCCHHHHHHHHcccccCCeeEEEec
Q 012133 49 TSKRTILSD-LITVYAKGGKTIVFTQTKRDADEVSLALTSI------IASEALHGDISQHQRERTLNGFRQGKFTVLVAT 121 (470)
Q Consensus 49 ~~k~~~l~~-ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~------~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaT 121 (470)
.-|...+.. +++.....+++||..||+..|.++++.+.+. ..+....+.-+ ..+...+|+|+|
T Consensus 31 SGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~----------~~~~~t~I~v~T 100 (812)
T PRK11664 31 AGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAES----------KVGPNTRLEVVT 100 (812)
T ss_pred CCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcc----------ccCCCCcEEEEC
Confidence 455544443 3333333469999999999999999988531 22333222211 111235789999
Q ss_pred c-----cccccCCCCCccEEEEecCC
Q 012133 122 D-----VAARGLDIPNVDLIIHYELP 142 (470)
Q Consensus 122 d-----v~~~Gidip~v~~VI~~~~p 142 (470)
+ .+....++.++.+||.-..-
T Consensus 101 ~G~Llr~l~~d~~L~~v~~IIlDEaH 126 (812)
T PRK11664 101 EGILTRMIQRDPELSGVGLVILDEFH 126 (812)
T ss_pred hhHHHHHHhhCCCcCcCcEEEEcCCC
Confidence 7 34445678889998864433
No 371
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=20.41 E-value=2e+02 Score=23.46 Aligned_cols=38 Identities=5% Similarity=0.006 Sum_probs=28.2
Q ss_pred cCCCeEEEEeCchHHHHHHHHHHhc-CCc-EEEEeCCCCH
Q 012133 63 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQ 100 (470)
Q Consensus 63 ~~~~~~lVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~~ 100 (470)
.+..++||+|.+-..+...+..|.. ++. +..+.+++..
T Consensus 62 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~ 101 (117)
T cd01522 62 GKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEG 101 (117)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceec
Confidence 4667899999987777788888874 554 6667777643
No 372
>PLN02160 thiosulfate sulfurtransferase
Probab=20.12 E-value=2.1e+02 Score=24.33 Aligned_cols=38 Identities=11% Similarity=-0.000 Sum_probs=29.7
Q ss_pred cCCCeEEEEeCchHHHHHHHHHHhc-CC-cEEEEeCCCCH
Q 012133 63 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDISQ 100 (470)
Q Consensus 63 ~~~~~~lVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~~~ 100 (470)
.+..++|+||.+=..+...+..|.. ++ .+..|.|++..
T Consensus 79 ~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~ 118 (136)
T PLN02160 79 NPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLA 118 (136)
T ss_pred CCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHH
Confidence 4567999999998888888888874 56 47778888644
No 373
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=20.11 E-value=5.4e+02 Score=21.83 Aligned_cols=70 Identities=20% Similarity=0.168 Sum_probs=38.7
Q ss_pred cHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccC
Q 012133 50 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 128 (470)
Q Consensus 50 ~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gi 128 (470)
...+.|.+.++.+ .+-.|++...+..+.+...+. ....+.+++|. +.+++.....+.+++|+--+...||
T Consensus 34 ~n~~~L~~q~~~f---~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~------~~l~~~~~~~~~D~vv~Ai~G~aGL 104 (129)
T PF02670_consen 34 SNIEKLAEQAREF---KPKYVVIADEEAYEELKKALPSKGPGIEVLSGP------EGLEELAEEPEVDIVVNAIVGFAGL 104 (129)
T ss_dssp STHHHHHHHHHHH---T-SEEEESSHHHHHHHHHHHHHTTSSSEEEESH------HHHHHHHTHTT-SEEEE--SSGGGH
T ss_pred CCHHHHHHHHHHh---CCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeCh------HHHHHHhcCCCCCEEEEeCcccchH
Confidence 3455566666665 233567777777788888775 45667777776 2333333334566666554444443
Done!