Query 012133
Match_columns 470
No_of_seqs 466 out of 3090
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 03:25:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i32_A Heat resistant RNA depe 100.0 1.1E-44 3.7E-49 354.3 28.8 289 38-349 2-291 (300)
2 3eaq_A Heat resistant RNA depe 100.0 1.1E-34 3.8E-39 270.4 26.0 207 38-245 5-212 (212)
3 2hjv_A ATP-dependent RNA helic 100.0 2.7E-29 9.3E-34 224.1 20.2 155 35-190 6-161 (163)
4 2db3_A ATP-dependent RNA helic 100.0 1E-29 3.6E-34 262.1 20.1 180 1-184 240-421 (434)
5 2rb4_A ATP-dependent RNA helic 100.0 2.2E-29 7.5E-34 227.4 17.9 161 35-196 4-172 (175)
6 2p6n_A ATP-dependent RNA helic 100.0 2.4E-29 8.3E-34 230.3 15.8 168 15-186 8-177 (191)
7 3sqw_A ATP-dependent RNA helic 100.0 8.6E-29 2.9E-33 264.4 21.9 192 1-192 217-419 (579)
8 1t5i_A C_terminal domain of A 100.0 6.8E-29 2.3E-33 223.5 16.9 156 36-192 3-160 (172)
9 1fuk_A Eukaryotic initiation f 100.0 1.1E-28 3.8E-33 220.5 16.4 156 37-193 2-159 (165)
10 2i4i_A ATP-dependent RNA helic 100.0 1.3E-28 4.4E-33 251.7 19.1 183 1-185 214-397 (417)
11 2j0s_A ATP-dependent RNA helic 100.0 1.3E-28 4.4E-33 251.4 18.4 190 1-193 214-405 (410)
12 3i5x_A ATP-dependent RNA helic 100.0 3E-28 1E-32 259.2 21.3 191 1-191 268-469 (563)
13 1s2m_A Putative ATP-dependent 100.0 9.7E-28 3.3E-32 244.0 22.7 189 1-193 198-387 (400)
14 2jgn_A DBX, DDX3, ATP-dependen 100.0 1.6E-28 5.6E-33 223.6 14.6 155 33-187 14-169 (185)
15 3fht_A ATP-dependent RNA helic 100.0 1.2E-27 4E-32 243.9 21.8 195 1-198 204-407 (412)
16 1xti_A Probable ATP-dependent 100.0 3.5E-27 1.2E-31 238.9 22.8 191 1-193 188-380 (391)
17 3eiq_A Eukaryotic initiation f 100.0 4.7E-28 1.6E-32 247.1 15.1 190 1-193 218-409 (414)
18 3pey_A ATP-dependent RNA helic 100.0 6.1E-27 2.1E-31 236.9 22.1 196 1-199 181-386 (395)
19 1hv8_A Putative ATP-dependent 99.9 8.3E-27 2.8E-31 233.5 20.5 183 1-191 182-365 (367)
20 3fmp_B ATP-dependent RNA helic 99.9 2.5E-28 8.5E-33 254.8 3.0 193 1-196 271-472 (479)
21 2yjt_D ATP-dependent RNA helic 99.9 1.3E-28 4.5E-33 221.2 0.0 153 38-191 3-157 (170)
22 1fuu_A Yeast initiation factor 99.9 1.5E-27 5.2E-32 241.6 3.6 189 1-192 197-387 (394)
23 2v1x_A ATP-dependent DNA helic 99.9 2.6E-25 8.9E-30 236.9 20.2 175 1-179 204-382 (591)
24 1oyw_A RECQ helicase, ATP-depe 99.9 4.7E-24 1.6E-28 224.6 22.9 174 1-182 178-354 (523)
25 2z0m_A 337AA long hypothetical 99.9 7.5E-25 2.6E-29 216.9 15.8 172 1-184 164-335 (337)
26 3fho_A ATP-dependent RNA helic 99.9 6.8E-26 2.3E-30 238.1 7.0 193 1-196 295-496 (508)
27 2xau_A PRE-mRNA-splicing facto 99.9 2.3E-24 7.9E-29 235.9 13.8 164 1-173 244-445 (773)
28 3oiy_A Reverse gyrase helicase 99.9 7.8E-23 2.7E-27 209.1 14.1 165 1-184 197-376 (414)
29 1tf5_A Preprotein translocase 99.9 8.3E-23 2.8E-27 219.5 9.4 163 3-172 373-546 (844)
30 2ykg_A Probable ATP-dependent 99.9 7.9E-23 2.7E-27 222.8 6.8 129 49-179 379-524 (696)
31 2d7d_A Uvrabc system protein B 99.9 5.8E-21 2E-25 205.9 19.9 130 50-180 430-565 (661)
32 3jux_A Protein translocase sub 99.9 5.2E-21 1.8E-25 201.3 17.9 164 2-172 414-588 (822)
33 1c4o_A DNA nucleotide excision 99.9 1.6E-20 5.4E-25 202.6 20.1 131 51-182 425-561 (664)
34 1yks_A Genome polyprotein [con 99.8 8.4E-23 2.9E-27 210.6 1.7 115 64-183 176-314 (440)
35 2whx_A Serine protease/ntpase/ 99.8 4.7E-22 1.6E-26 212.5 6.9 157 1-183 312-493 (618)
36 1gku_B Reverse gyrase, TOP-RG; 99.8 5.2E-22 1.8E-26 224.3 6.8 188 1-201 219-487 (1054)
37 3dmq_A RNA polymerase-associat 99.8 2.2E-20 7.6E-25 209.5 18.4 167 46-213 485-657 (968)
38 2p6r_A Afuhel308 helicase; pro 99.8 1E-20 3.5E-25 206.4 15.3 111 62-172 239-389 (702)
39 2fsf_A Preprotein translocase 99.8 3.7E-21 1.3E-25 206.3 10.5 163 3-172 382-584 (853)
40 2wv9_A Flavivirin protease NS2 99.8 1.2E-21 4.2E-26 210.8 5.8 115 64-183 409-548 (673)
41 3l9o_A ATP-dependent RNA helic 99.8 3.8E-20 1.3E-24 209.3 18.0 116 64-179 440-606 (1108)
42 4a2p_A RIG-I, retinoic acid in 99.8 2.2E-20 7.7E-25 197.5 14.9 124 49-174 371-511 (556)
43 2va8_A SSO2462, SKI2-type heli 99.8 5.7E-20 1.9E-24 200.9 18.2 115 58-172 245-409 (715)
44 2zj8_A DNA helicase, putative 99.8 3.4E-20 1.2E-24 202.8 15.8 127 62-190 234-404 (720)
45 4ddu_A Reverse gyrase; topoiso 99.8 2.4E-20 8.2E-25 210.9 15.0 182 1-201 254-524 (1104)
46 4a2q_A RIG-I, retinoic acid in 99.8 6.5E-20 2.2E-24 202.6 17.9 123 50-174 613-752 (797)
47 1wp9_A ATP-dependent RNA helic 99.8 2.2E-20 7.5E-25 193.1 13.2 123 49-172 342-476 (494)
48 1nkt_A Preprotein translocase 99.8 8.9E-20 3.1E-24 195.9 16.5 164 3-173 401-619 (922)
49 2xgj_A ATP-dependent RNA helic 99.8 3E-19 1E-23 200.3 21.1 116 64-179 342-508 (1010)
50 3o8b_A HCV NS3 protease/helica 99.8 1.8E-20 6.1E-25 199.4 10.4 123 64-196 395-543 (666)
51 2z83_A Helicase/nucleoside tri 99.8 1.9E-21 6.6E-26 201.5 2.8 102 65-171 190-313 (459)
52 2eyq_A TRCF, transcription-rep 99.8 9.8E-20 3.4E-24 207.0 15.7 164 1-171 755-922 (1151)
53 2jlq_A Serine protease subunit 99.8 3.8E-20 1.3E-24 191.4 11.2 101 65-170 188-310 (451)
54 4gl2_A Interferon-induced heli 99.8 2.8E-20 9.6E-25 202.7 10.1 103 65-170 400-517 (699)
55 3tbk_A RIG-I helicase domain; 99.8 4.2E-20 1.4E-24 195.2 11.0 129 49-179 370-515 (555)
56 1gm5_A RECG; helicase, replica 99.8 5E-20 1.7E-24 200.8 8.3 172 1-178 520-704 (780)
57 1z5z_A Helicase of the SNF2/RA 99.8 4.1E-19 1.4E-23 171.0 10.0 124 47-170 93-223 (271)
58 4a2w_A RIG-I, retinoic acid in 99.8 1.5E-18 5E-23 194.4 14.8 123 49-173 612-751 (936)
59 2v6i_A RNA helicase; membrane, 99.8 4.7E-19 1.6E-23 182.1 8.0 100 64-168 170-288 (431)
60 4a4z_A Antiviral helicase SKI2 99.8 1.1E-17 3.9E-22 187.5 18.8 126 52-179 324-502 (997)
61 2fwr_A DNA repair protein RAD2 99.8 5.8E-20 2E-24 191.0 0.0 114 48-166 333-447 (472)
62 4f92_B U5 small nuclear ribonu 99.7 2E-17 6.7E-22 193.7 17.5 176 1-179 1087-1316(1724)
63 3rc3_A ATP-dependent RNA helic 99.7 3.9E-17 1.3E-21 175.4 14.1 122 66-189 321-462 (677)
64 3h1t_A Type I site-specific re 99.7 3.3E-17 1.1E-21 175.1 13.4 101 59-160 433-545 (590)
65 2oca_A DAR protein, ATP-depend 99.7 2E-17 6.8E-22 173.5 10.3 117 52-169 333-453 (510)
66 4f92_B U5 small nuclear ribonu 99.7 3.1E-17 1.1E-21 192.0 11.8 175 1-179 248-481 (1724)
67 1z63_A Helicase of the SNF2/RA 99.6 4.8E-16 1.6E-20 162.6 12.6 118 49-166 324-446 (500)
68 1z3i_X Similar to RAD54-like; 99.6 4.7E-15 1.6E-19 159.8 15.1 134 49-182 398-541 (644)
69 3mwy_W Chromo domain-containin 99.6 1.9E-14 6.6E-19 158.7 15.6 137 49-185 555-700 (800)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.4 2.1E-12 7.3E-17 144.5 15.4 119 65-185 537-722 (1038)
71 2e29_A ATP-dependent RNA helic 99.1 3.9E-10 1.3E-14 88.5 7.9 89 244-339 2-91 (92)
72 1dsq_A Nucleic acid binding pr 98.6 1.9E-08 6.5E-13 59.5 2.0 17 454-470 4-20 (26)
73 2ipc_A Preprotein translocase 98.6 8.4E-07 2.9E-11 95.8 15.9 163 3-172 384-699 (997)
74 1a6b_B Momulv, zinc finger pro 98.4 9.6E-08 3.3E-12 62.2 1.7 17 454-470 12-28 (40)
75 2a51_A Nucleocapsid protein; s 98.2 9.3E-07 3.2E-11 57.8 4.3 16 455-470 24-39 (39)
76 1cl4_A Protein (GAG polyprotei 98.2 4.6E-07 1.6E-11 65.5 2.4 47 393-470 2-48 (60)
77 1nc8_A Nucleocapsid protein; H 98.2 4.2E-07 1.4E-11 55.2 1.1 17 454-470 8-24 (29)
78 1u6p_A GAG polyprotein; MLV, A 98.1 5.3E-07 1.8E-11 63.4 1.2 17 454-470 25-41 (56)
79 2bl6_A Nucleocapsid protein P1 98.1 1.7E-06 5.9E-11 55.8 3.4 16 455-470 22-37 (37)
80 2cqf_A RNA-binding protein LIN 98.1 5E-06 1.7E-10 60.5 5.5 40 393-470 8-47 (63)
81 2ec7_A GAG polyprotein (PR55GA 98.1 3E-06 1E-10 58.4 3.8 16 455-470 30-45 (49)
82 2g0c_A ATP-dependent RNA helic 98.0 4.2E-06 1.4E-10 63.6 4.3 61 264-331 1-61 (76)
83 2ihx_A Nucleocapsid (NC) prote 98.0 3E-06 1E-10 61.3 3.2 44 393-470 5-48 (61)
84 2vl7_A XPD; helicase, unknown 98.0 9.8E-06 3.4E-10 85.1 8.2 75 64-143 383-463 (540)
85 2ysa_A Retinoblastoma-binding 97.9 3.4E-06 1.2E-10 59.0 2.0 16 454-469 9-24 (55)
86 2li8_A Protein LIN-28 homolog 97.9 1.1E-05 3.7E-10 60.6 4.9 16 455-470 49-64 (74)
87 1a1t_A Nucleocapsid protein; s 97.9 4.7E-06 1.6E-10 58.9 2.5 16 455-470 36-51 (55)
88 3ts2_A Protein LIN-28 homolog 97.9 9.5E-06 3.3E-10 69.8 4.6 40 393-470 98-137 (148)
89 3i31_A Heat resistant RNA depe 97.8 4.6E-05 1.6E-09 56.9 6.0 77 252-348 2-78 (88)
90 4a15_A XPD helicase, ATP-depen 97.7 0.00019 6.4E-09 76.6 12.8 104 64-170 447-583 (620)
91 3hgt_A HDA1 complex subunit 3; 97.6 0.00064 2.2E-08 65.7 13.6 120 48-172 107-238 (328)
92 2a51_A Nucleocapsid protein; s 97.6 1.9E-05 6.4E-10 51.5 1.7 16 455-470 3-18 (39)
93 2lli_A Protein AIR2; RNA surve 97.6 0.00028 9.7E-09 58.7 8.8 18 453-470 106-123 (124)
94 2bl6_A Nucleocapsid protein P1 97.6 2.6E-05 8.9E-10 50.2 1.8 16 455-470 3-18 (37)
95 2ec7_A GAG polyprotein (PR55GA 97.4 4.2E-05 1.4E-09 52.5 1.7 17 454-470 8-24 (49)
96 3nyb_B Protein AIR2; polya RNA 97.4 3.2E-05 1.1E-09 59.3 1.1 17 454-470 48-64 (83)
97 2ihx_A Nucleocapsid (NC) prote 97.3 5.4E-05 1.8E-09 54.6 1.2 17 454-470 6-22 (61)
98 2cqf_A RNA-binding protein LIN 97.2 0.00018 6E-09 52.2 3.0 17 454-470 9-25 (63)
99 1a1t_A Nucleocapsid protein; s 97.2 9.8E-05 3.4E-09 52.1 1.1 17 454-470 14-30 (55)
100 2li8_A Protein LIN-28 homolog 97.1 0.00033 1.1E-08 52.4 3.8 17 454-470 26-42 (74)
101 3crv_A XPD/RAD3 related DNA he 96.6 0.014 4.8E-07 61.1 12.8 75 64-143 392-473 (551)
102 3ts2_A Protein LIN-28 homolog 96.5 0.00062 2.1E-08 58.4 1.3 16 455-470 100-115 (148)
103 2lli_A Protein AIR2; RNA surve 96.4 0.0048 1.6E-07 51.2 6.0 18 453-470 65-82 (124)
104 1gm5_A RECG; helicase, replica 95.8 0.02 6.7E-07 62.4 8.9 92 49-140 400-498 (780)
105 3oiy_A Reverse gyrase helicase 95.7 0.023 8E-07 56.8 8.3 90 49-138 47-145 (414)
106 4ddu_A Reverse gyrase; topoiso 94.5 0.061 2.1E-06 60.9 7.8 92 47-139 102-203 (1104)
107 3fe2_A Probable ATP-dependent 94.1 0.95 3.2E-05 41.3 13.9 70 65-138 102-182 (242)
108 2eyq_A TRCF, transcription-rep 93.7 0.19 6.4E-06 57.3 9.8 90 49-138 635-731 (1151)
109 1wrb_A DJVLGB; RNA helicase, D 93.0 0.7 2.4E-05 42.4 11.2 69 66-138 101-180 (253)
110 3iuy_A Probable ATP-dependent 92.3 0.47 1.6E-05 42.8 8.8 71 64-138 93-173 (228)
111 3ber_A Probable ATP-dependent 91.5 0.91 3.1E-05 41.8 9.8 70 65-138 111-192 (249)
112 1t6n_A Probable ATP-dependent 91.4 1.9 6.4E-05 38.5 11.6 70 66-138 83-164 (220)
113 1qde_A EIF4A, translation init 90.6 2.2 7.7E-05 38.0 11.4 88 46-138 59-161 (224)
114 2oxc_A Probable ATP-dependent 90.5 0.59 2E-05 42.3 7.4 71 47-122 70-150 (230)
115 2gxq_A Heat resistant RNA depe 90.4 2 6.8E-05 37.7 10.7 88 47-138 47-150 (207)
116 2v1x_A ATP-dependent DNA helic 90.4 0.63 2.1E-05 49.0 8.4 75 64-138 83-171 (591)
117 1oyw_A RECQ helicase, ATP-depe 90.3 0.6 2.1E-05 48.3 8.1 75 64-138 64-145 (523)
118 1vec_A ATP-dependent RNA helic 89.9 1.1 3.6E-05 39.6 8.4 70 65-138 71-152 (206)
119 2db3_A ATP-dependent RNA helic 89.6 0.87 3E-05 45.7 8.4 70 65-138 129-209 (434)
120 1gku_B Reverse gyrase, TOP-RG; 89.6 0.61 2.1E-05 52.6 7.9 76 61-138 95-181 (1054)
121 3ly5_A ATP-dependent RNA helic 89.3 1.4 4.8E-05 40.8 9.1 71 64-138 125-207 (262)
122 1xti_A Probable ATP-dependent 87.9 2.3 7.7E-05 41.4 10.0 71 65-138 76-158 (391)
123 2pl3_A Probable ATP-dependent 87.9 2.1 7.1E-05 38.6 9.1 54 64-122 96-154 (236)
124 3bor_A Human initiation factor 87.6 1.7 5.8E-05 39.5 8.3 87 49-138 78-179 (237)
125 2i4i_A ATP-dependent RNA helic 86.9 1.7 5.8E-05 42.8 8.5 69 66-138 102-181 (417)
126 4a2p_A RIG-I, retinoic acid in 86.7 1.2 4E-05 45.9 7.4 70 65-138 55-136 (556)
127 1wp9_A ATP-dependent RNA helic 85.5 2.1 7.3E-05 42.5 8.5 70 64-138 51-131 (494)
128 1q0u_A Bstdead; DEAD protein, 85.1 1.1 3.6E-05 40.2 5.4 71 48-122 51-134 (219)
129 3tbk_A RIG-I helicase domain; 84.8 1.2 4E-05 45.7 6.2 70 65-138 52-133 (555)
130 2hqh_E Restin; beta/BETA struc 84.3 0.25 8.7E-06 28.1 0.5 16 455-470 6-21 (26)
131 4a2q_A RIG-I, retinoic acid in 84.0 1.8 6.3E-05 47.0 7.6 70 65-138 296-377 (797)
132 3nyb_B Protein AIR2; polya RNA 83.8 0.25 8.4E-06 37.5 0.4 15 455-469 27-41 (83)
133 1fuu_A Yeast initiation factor 83.1 2.5 8.7E-05 41.0 7.6 70 64-138 88-168 (394)
134 2z0m_A 337AA long hypothetical 82.9 3.7 0.00013 38.8 8.5 84 48-138 41-135 (337)
135 1hv8_A Putative ATP-dependent 82.6 6 0.0002 37.7 10.0 87 47-138 53-153 (367)
136 2j0s_A ATP-dependent RNA helic 82.2 4.9 0.00017 39.4 9.3 71 64-138 104-185 (410)
137 1s2m_A Putative ATP-dependent 81.4 6.3 0.00022 38.3 9.9 87 48-138 68-169 (400)
138 3pgw_S U1-70K; protein-RNA com 81.1 24 0.00081 35.3 14.0 58 262-328 101-163 (437)
139 3fmo_B ATP-dependent RNA helic 79.3 2.4 8.2E-05 40.2 5.7 85 47-138 140-241 (300)
140 1h2v_Z 20 kDa nuclear CAP bind 78.5 7.2 0.00025 32.6 8.0 58 262-328 38-100 (156)
141 3dkp_A Probable ATP-dependent 78.4 2 7E-05 38.9 4.7 89 47-138 75-181 (245)
142 4a2w_A RIG-I, retinoic acid in 75.7 2.6 8.8E-05 46.9 5.3 70 65-138 296-377 (936)
143 3eiq_A Eukaryotic initiation f 74.5 4.2 0.00014 39.8 6.1 87 49-138 88-189 (414)
144 3dmn_A Putative DNA helicase; 74.4 27 0.00093 29.7 10.7 114 8-141 8-123 (174)
145 1tf5_A Preprotein translocase 74.0 6.2 0.00021 42.8 7.5 74 58-138 118-209 (844)
146 2ykg_A Probable ATP-dependent 73.0 4 0.00014 43.3 6.0 69 66-138 62-142 (696)
147 3q2s_C Cleavage and polyadenyl 73.0 6.1 0.00021 35.8 6.4 60 262-328 67-131 (229)
148 3fmp_B ATP-dependent RNA helic 71.7 9.1 0.00031 38.5 8.0 85 47-138 140-241 (479)
149 2fsf_A Preprotein translocase 71.5 8 0.00027 42.0 7.7 69 64-138 114-200 (853)
150 3b6e_A Interferon-induced heli 69.7 4.5 0.00015 35.5 4.6 54 65-122 82-140 (216)
151 1nkt_A Preprotein translocase 68.7 9.9 0.00034 41.5 7.6 76 56-138 144-237 (922)
152 2pk2_A Cyclin-T1, protein TAT; 67.4 1.1 3.8E-05 43.8 0.0 8 233-240 192-199 (358)
153 2oca_A DAR protein, ATP-depend 67.4 5.1 0.00017 40.7 5.0 67 65-138 157-231 (510)
154 2ipc_A Preprotein translocase 66.7 11 0.00039 41.2 7.5 59 57-122 113-176 (997)
155 2l82_A Designed protein OR32; 66.5 45 0.0015 26.1 12.2 53 68-120 5-58 (162)
156 3l9o_A ATP-dependent RNA helic 66.4 7.3 0.00025 44.0 6.4 69 59-138 221-296 (1108)
157 2zj8_A DNA helicase, putative 64.8 6.5 0.00022 42.1 5.4 83 49-138 50-144 (720)
158 2pzo_E CAP-Gly domain-containi 62.3 2 7E-05 27.3 0.5 16 455-470 23-38 (42)
159 2p6r_A Afuhel308 helicase; pro 61.8 9.2 0.00032 40.7 5.9 83 49-138 51-144 (702)
160 3i5x_A ATP-dependent RNA helic 61.2 15 0.00053 37.6 7.3 70 66-138 147-232 (563)
161 4gl2_A Interferon-induced heli 61.1 3 0.0001 44.4 1.9 69 66-138 57-142 (699)
162 3flh_A Uncharacterized protein 58.6 5.1 0.00018 32.2 2.5 44 57-100 63-109 (124)
163 3sqw_A ATP-dependent RNA helic 58.5 3.8 0.00013 42.6 2.1 70 66-138 96-181 (579)
164 3gk5_A Uncharacterized rhodane 58.1 9 0.00031 29.9 3.8 44 57-100 47-91 (108)
165 2pk2_A Cyclin-T1, protein TAT; 57.0 2.2 7.7E-05 41.7 0.0 6 323-328 239-244 (358)
166 4a4z_A Antiviral helicase SKI2 54.9 17 0.00059 40.5 6.7 65 62-137 79-152 (997)
167 3pey_A ATP-dependent RNA helic 51.5 34 0.0011 32.7 7.6 83 48-138 54-151 (395)
168 2jtq_A Phage shock protein E; 51.5 35 0.0012 24.9 6.1 43 56-99 30-76 (85)
169 1gmx_A GLPE protein; transfera 51.2 17 0.00059 28.1 4.4 47 55-101 48-96 (108)
170 1c4o_A DNA nucleotide excision 50.7 83 0.0029 33.1 11.0 83 44-128 34-144 (664)
171 3o8b_A HCV NS3 protease/helica 50.7 28 0.00095 36.9 7.1 67 64-141 256-327 (666)
172 3g5j_A Putative ATP/GTP bindin 50.6 19 0.00066 28.7 4.8 43 59-101 82-127 (134)
173 2fz4_A DNA repair protein RAD2 50.6 44 0.0015 29.9 7.8 60 48-122 118-179 (237)
174 2va8_A SSO2462, SKI2-type heli 50.1 15 0.0005 39.2 5.1 85 47-138 55-151 (715)
175 2xgj_A ATP-dependent RNA helic 49.3 16 0.00053 40.9 5.2 68 60-138 124-198 (1010)
176 2dgu_A Heterogeneous nuclear r 48.8 83 0.0028 23.6 10.1 68 263-343 11-82 (103)
177 3fht_A ATP-dependent RNA helic 48.3 22 0.00077 34.3 5.8 85 47-138 73-174 (412)
178 3hix_A ALR3790 protein; rhodan 46.3 20 0.00068 27.7 4.1 42 59-100 46-89 (106)
179 2fwr_A DNA repair protein RAD2 45.7 28 0.00094 34.7 6.1 75 49-138 119-198 (472)
180 3e2u_E CAP-Gly domain-containi 43.5 6.2 0.00021 25.2 0.5 17 454-470 22-38 (42)
181 3hjh_A Transcription-repair-co 43.0 1.2E+02 0.004 30.6 10.2 110 41-152 17-145 (483)
182 1tq1_A AT5G66040, senescence-a 42.0 15 0.0005 29.7 2.7 44 57-100 74-119 (129)
183 3foj_A Uncharacterized protein 41.0 9.2 0.00031 29.3 1.2 38 62-99 53-91 (100)
184 1vee_A Proline-rich protein fa 40.8 25 0.00084 28.5 4.0 37 63-99 72-110 (134)
185 1rif_A DAR protein, DNA helica 40.8 28 0.00095 32.0 4.8 51 65-122 157-212 (282)
186 2d7d_A Uvrabc system protein B 40.7 1.1E+02 0.0039 32.1 10.1 107 44-152 38-176 (661)
187 3ilm_A ALR3790 protein; rhodan 38.5 22 0.00076 29.2 3.3 39 62-100 53-93 (141)
188 3iwh_A Rhodanese-like domain p 38.4 8.8 0.0003 29.9 0.8 39 60-98 51-90 (103)
189 3fho_A ATP-dependent RNA helic 37.7 49 0.0017 33.5 6.5 66 65-138 189-265 (508)
190 2q5c_A NTRC family transcripti 35.4 1.2E+02 0.0042 26.2 7.9 124 65-199 4-132 (196)
191 3eme_A Rhodanese-like domain p 35.0 25 0.00087 26.8 3.0 38 62-99 53-91 (103)
192 1wv9_A Rhodanese homolog TT165 35.0 37 0.0013 25.3 3.9 36 63-99 52-88 (94)
193 2pju_A Propionate catabolism o 35.0 2.4E+02 0.0083 25.0 10.3 125 66-199 13-144 (225)
194 1qys_A TOP7; alpha-beta, novel 33.8 1.1E+02 0.0038 22.2 5.8 51 37-87 15-69 (106)
195 2k0z_A Uncharacterized protein 31.6 75 0.0026 24.4 5.3 38 62-99 53-91 (110)
196 2fcj_A Small toprim domain pro 31.2 97 0.0033 24.8 5.9 54 67-122 5-58 (119)
197 3mwy_W Chromo domain-containin 30.1 98 0.0033 33.3 7.6 61 61-122 282-353 (800)
198 3sxu_A DNA polymerase III subu 29.9 96 0.0033 25.8 5.9 77 51-142 24-105 (150)
199 3iz6_A 40S ribosomal protein S 28.5 59 0.002 30.5 4.7 35 52-87 62-96 (305)
200 2fsx_A RV0390, COG0607: rhodan 28.2 68 0.0023 26.2 4.7 37 63-99 78-116 (148)
201 3bbn_B Ribosomal protein S2; s 26.6 36 0.0012 30.8 2.8 29 58-86 56-84 (231)
202 1vp8_A Hypothetical protein AF 26.4 1.4E+02 0.0047 26.2 6.3 78 42-124 18-108 (201)
203 1t57_A Conserved protein MTH16 25.9 73 0.0025 27.9 4.5 79 42-124 26-115 (206)
204 2hhg_A Hypothetical protein RP 25.3 55 0.0019 26.3 3.6 38 63-100 84-123 (139)
205 2lci_A Protein OR36; structura 25.2 2.2E+02 0.0075 21.5 9.9 60 63-122 49-109 (134)
206 3e05_A Precorrin-6Y C5,15-meth 25.0 2.8E+02 0.0096 23.3 8.5 42 48-89 118-160 (204)
207 3nhv_A BH2092 protein; alpha-b 23.3 58 0.002 26.6 3.4 39 62-100 69-110 (144)
208 3u5c_A 40S ribosomal protein S 22.1 69 0.0023 29.3 3.8 51 66-122 70-125 (252)
209 2yv1_A Succinyl-COA ligase [AD 21.5 1.5E+02 0.0052 27.5 6.3 52 64-115 70-122 (294)
210 2yv2_A Succinyl-COA synthetase 21.4 87 0.003 29.3 4.6 51 65-115 72-123 (297)
211 3ipz_A Monothiol glutaredoxin- 20.7 2.8E+02 0.0096 21.0 7.1 45 64-108 16-67 (109)
212 2v6i_A RNA helicase; membrane, 20.6 37 0.0013 33.6 1.8 35 63-98 29-63 (431)
213 1qxn_A SUD, sulfide dehydrogen 20.3 67 0.0023 25.9 3.1 39 62-100 79-119 (137)
214 3d1p_A Putative thiosulfate su 20.2 72 0.0025 25.6 3.3 36 64-99 90-127 (139)
No 1
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=1.1e-44 Score=354.29 Aligned_cols=289 Identities=38% Similarity=0.595 Sum_probs=252.4
Q ss_pred ceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCee
Q 012133 38 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFT 116 (470)
Q Consensus 38 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~ 116 (470)
+++|+++.++..+|.++|.++++.+. .+++||||+|++.++.+++.|.. ++.+..+||+|++.+|+.+++.|++++++
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 46789999999999999999998874 78999999999999999999975 78999999999999999999999999999
Q ss_pred EEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCccccCCCCHH
Q 012133 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 196 (470)
Q Consensus 117 iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p~~~ 196 (470)
|||||+++++|||+|+|++||+|++|++.++|+||+||+||.|++|.|++|+++.+...++.+++.++.+++.+.+|+.+
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ 160 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 160 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHH
T ss_pred EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcccCccchhhhHHHHHHHHHhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeeCCcccc
Q 012133 197 DVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSR 276 (470)
Q Consensus 197 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~l~~~~~~~~l~~al~~l~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~ 276 (470)
++.+..+..++..+..+....++.|.+.++++++++.++.++++|+.+++... .++++++...+|++++++.++ .
T Consensus 161 ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~--~~~~l~~~~~~~~~~~~~~g~---~ 235 (300)
T 3i32_A 161 EVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAP--AERSLLTGEEGWRTYKATGPR---L 235 (300)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC--CCBCTTTCCBSCBCEEEECTT---C
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc--CccccccCCCCcEEEEEecCC---C
Confidence 99999999999999988888899999999999999999999999999998776 678898889999999999987 3
Q ss_pred CCcchhhHHhHhhhhcCcCcCccccEEEeecCccceeEeecCHHHHHHHHhhcCCCCCeEEEeccCCCccCCC
Q 012133 277 GFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDG 349 (470)
Q Consensus 277 ~~~~~~~v~~~l~~~~~~~~~~Ig~I~i~~~~~~~ga~fdv~~~~a~~i~~~~~~~g~~i~~~~~lP~~~~~~ 349 (470)
.. |++++ .|++. +. +||+|++.++ ++|||||++.++ ...++.++++++||+++++.
T Consensus 236 ~~--~~~~~-~i~~~-~~---~ig~i~~~~~----~~~~dvp~~~~~------~~~~~~~~~~~~~p~~~~~~ 291 (300)
T 3i32_A 236 SL--PRLVA-LLKGQ-GL---EVGKVAEAEG----GFYVDLRPEARP------EVAGLRLEPARRVEGLLEIP 291 (300)
T ss_dssp CH--HHHHH-HHHHT-TC---CCCCEEEETT----EEEECBCSSCCC------CCTTCEEEEC----------
T ss_pred CC--cHHHH-HHHhc-CC---eECcEEEeCC----EEEEEeCHHHcC------cCCCcEEEecccCCCCccCC
Confidence 33 99997 66654 33 8999999766 489999999888 34689999999999998764
No 2
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=100.00 E-value=1.1e-34 Score=270.38 Aligned_cols=207 Identities=44% Similarity=0.699 Sum_probs=193.5
Q ss_pred ceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCee
Q 012133 38 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFT 116 (470)
Q Consensus 38 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~ 116 (470)
.+.+.++.++...|.++|.++++.. ..+++||||++++.++.+++.|.. ++.+..+||+|++.+|.++++.|+++.++
T Consensus 5 ~~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 83 (212)
T 3eaq_A 5 TYEEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR 83 (212)
T ss_dssp CBCCEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC
T ss_pred ceeeeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe
Confidence 3456788888899999999999876 568999999999999999999985 89999999999999999999999999999
Q ss_pred EEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCccccCCCCHH
Q 012133 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 196 (470)
Q Consensus 117 iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p~~~ 196 (470)
|||||+++++|||+|++++||+|++|+++.+|+||+||+||.|++|.|++|+++.+...++.+++.++.+++.+.+|..+
T Consensus 84 vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 163 (212)
T 3eaq_A 84 VLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 163 (212)
T ss_dssp EEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHH
T ss_pred EEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcccCccchhhhHHHHHHHHHhhCHHHHHHHHHHHc
Q 012133 197 DVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 245 (470)
Q Consensus 197 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~l~~~~~~~~l~~al~~l~ 245 (470)
++.+..++.++..+..........|.+.++++++++++++++++|++|+
T Consensus 164 ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~ll 212 (212)
T 3eaq_A 164 EVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLL 212 (212)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhhC
Confidence 9999999999999999887777899999999999999999999999874
No 3
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.97 E-value=2.7e-29 Score=224.09 Aligned_cols=155 Identities=34% Similarity=0.613 Sum_probs=146.3
Q ss_pred cccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccC
Q 012133 35 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG 113 (470)
Q Consensus 35 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g 113 (470)
.+.+|+|+++.++.+.|.+.|.++++.. ...++||||++++.++.+++.|.. ++.+..+||+|++.+|..+++.|+++
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 4567999999999999999999999876 557999999999999999999985 78999999999999999999999999
Q ss_pred CeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCcccc
Q 012133 114 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV 190 (470)
Q Consensus 114 ~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~ 190 (470)
+++|||||+++++|+|+|++++||+|++|+++.+|+||+||++|.|++|.+++|+++.+...++.|++.++.+++++
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 161 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKI 161 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEEC
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887654
No 4
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.97 E-value=1e-29 Score=262.06 Aligned_cols=180 Identities=34% Similarity=0.561 Sum_probs=159.2
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
|+||||+|+++.++++.++.++..+.+.. .......+.+.++.+....|...|.+++.... .++||||+|++.++.
T Consensus 240 l~~SAT~~~~~~~~~~~~l~~~~~i~~~~--~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~--~~~lVF~~t~~~a~~ 315 (434)
T 2db3_A 240 LMFSATFPEEIQRMAGEFLKNYVFVAIGI--VGGACSDVKQTIYEVNKYAKRSKLIEILSEQA--DGTIVFVETKRGADF 315 (434)
T ss_dssp EEEESCCCHHHHHHHHTTCSSCEEEEESS--TTCCCTTEEEEEEECCGGGHHHHHHHHHHHCC--TTEEEECSSHHHHHH
T ss_pred EEEeccCCHHHHHHHHHhccCCEEEEecc--ccccccccceEEEEeCcHHHHHHHHHHHHhCC--CCEEEEEeCcHHHHH
Confidence 58999999999999999999998887642 23445678888888888899988888887653 359999999999999
Q ss_pred HHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCC
Q 012133 81 VSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 159 (470)
Q Consensus 81 l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g 159 (470)
+++.|.+ ++.+..+||++++.+|+++++.|++++.+|||||+++++|||+|+|++||+||+|.+.++|+||+|||||.|
T Consensus 316 l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g 395 (434)
T 2db3_A 316 LASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVG 395 (434)
T ss_dssp HHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTT
T ss_pred HHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCC
Confidence 9999985 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeChh-hHHHHHHHHHHhC
Q 012133 160 KEGTAILMFTSS-QRRTVRSLERDVG 184 (470)
Q Consensus 160 ~~g~~i~l~~~~-~~~~~~~i~~~~~ 184 (470)
+.|.+++|+++. +...++.|.+.+.
T Consensus 396 ~~G~a~~~~~~~~~~~~~~~l~~~l~ 421 (434)
T 2db3_A 396 NNGRATSFFDPEKDRAIAADLVKILE 421 (434)
T ss_dssp CCEEEEEEECTTTCGGGHHHHHHHHH
T ss_pred CCCEEEEEEeccccHHHHHHHHHHHH
Confidence 999999999954 4555555655543
No 5
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.2e-29 Score=227.36 Aligned_cols=161 Identities=28% Similarity=0.502 Sum_probs=145.3
Q ss_pred cccceEEEEEEcCccc-HHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHccccc
Q 012133 35 LAEGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ 112 (470)
Q Consensus 35 ~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~ 112 (470)
++.+|+|+++.++... |.+.|..+++.. ..+++||||++++.++.++..|.. ++.+..+||+|++.+|.++++.|++
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 4578999999998765 999998888765 567999999999999999999985 7899999999999999999999999
Q ss_pred CCeeEEEecccccccCCCCCccEEEEecCC------CChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCC
Q 012133 113 GKFTVLVATDVAARGLDIPNVDLIIHYELP------NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 186 (470)
Q Consensus 113 g~~~iLVaTdv~~~Gidip~v~~VI~~~~p------~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~ 186 (470)
++++|||||+++++|+|+|++++||+||+| .+..+|+||+||+||.|+.|.+++|+++.+...++.+++.++.+
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred ccccCCCCHH
Q 012133 187 FEFVSPPVVE 196 (470)
Q Consensus 187 ~~~~~~p~~~ 196 (470)
++.++++..+
T Consensus 163 ~~~~~~~~~~ 172 (175)
T 2rb4_A 163 IKQLNAEDMD 172 (175)
T ss_dssp CEEECSSCCC
T ss_pred ccccCCchhc
Confidence 9888776544
No 6
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=2.4e-29 Score=230.26 Aligned_cols=168 Identities=27% Similarity=0.393 Sum_probs=132.8
Q ss_pred HHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEE
Q 012133 15 SRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEA 93 (470)
Q Consensus 15 ~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~ 93 (470)
..+||++|..|.+.. ......+|.++++.++.+.|...|.+++... ..++||||++++.++.+++.|.. ++.+..
T Consensus 8 ~~~~~~~p~~i~v~~--~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~ 83 (191)
T 2p6n_A 8 SSGVDLGTENLYFQS--MGAASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVA 83 (191)
T ss_dssp ----------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEE
T ss_pred cccccCCCEEEEECC--CCCCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 457999999998743 3355678999999999999999988888653 46899999999999999999984 899999
Q ss_pred EeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChh-h
Q 012133 94 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-Q 172 (470)
Q Consensus 94 lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~-~ 172 (470)
+||+|++.+|.++++.|++++.+|||||+++++|+|+|++++||+||+|+++++|+||+||++|.|++|.+++|+++. +
T Consensus 84 lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~ 163 (191)
T 2p6n_A 84 IHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACD 163 (191)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSC
T ss_pred EeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999976 6
Q ss_pred HHHHHHHHHHhCCC
Q 012133 173 RRTVRSLERDVGCK 186 (470)
Q Consensus 173 ~~~~~~i~~~~~~~ 186 (470)
...++.|++.+...
T Consensus 164 ~~~~~~l~~~l~~~ 177 (191)
T 2p6n_A 164 ESVLMDLKALLLEA 177 (191)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 67777777766433
No 7
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.96 E-value=8.6e-29 Score=264.37 Aligned_cols=192 Identities=27% Similarity=0.402 Sum_probs=161.4
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeec--ccccccccceEEEEEEcCcc--cHHHHHHHHHH---HHcCCCeEEEEeC
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVG--NQDEKLAEGIKLYAISTTAT--SKRTILSDLIT---VYAKGGKTIVFTQ 73 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~--~~~~~~~~~i~~~~~~~~~~--~k~~~l~~ll~---~~~~~~~~lVF~~ 73 (470)
|+||||+|+.+.++++.++.+|..+.+.. .........+.+.++..... .+..++..++. ......++||||+
T Consensus 217 l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~ 296 (579)
T 3sqw_A 217 LLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAP 296 (579)
T ss_dssp EEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECS
T ss_pred EEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECC
Confidence 58999999999999999999887765532 22333445666666655442 23333433333 3245679999999
Q ss_pred chHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHH
Q 012133 74 TKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 149 (470)
Q Consensus 74 t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~ 149 (470)
|++.++.+++.|.+ .+.+..+||+|++.+|.++++.|++++.+|||||+++++|||+|+|++||+|++|.+++.|+
T Consensus 297 t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~ 376 (579)
T 3sqw_A 297 TVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYI 376 (579)
T ss_dssp SHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHH
T ss_pred cHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhh
Confidence 99999999999974 68899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCccccCC
Q 012133 150 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 192 (470)
Q Consensus 150 qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~ 192 (470)
||+|||||.|+.|.|++|+++.+...++.|++.....+.....
T Consensus 377 Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~ 419 (579)
T 3sqw_A 377 HRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEK 419 (579)
T ss_dssp HHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEEE
T ss_pred hhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCcccccC
Confidence 9999999999999999999999999999999998887766543
No 8
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=6.8e-29 Score=223.51 Aligned_cols=156 Identities=23% Similarity=0.451 Sum_probs=143.6
Q ss_pred ccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCC
Q 012133 36 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK 114 (470)
Q Consensus 36 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~ 114 (470)
+.+|+|+++.++.++|...|.++++.. ...++||||++++.++.+++.|.. ++.+..+||+|++.+|..+++.|++++
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 467899999999999999999999876 567999999999999999999985 789999999999999999999999999
Q ss_pred eeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChh-hHHHHHHHHHHhCCCccccCC
Q 012133 115 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFVSP 192 (470)
Q Consensus 115 ~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~-~~~~~~~i~~~~~~~~~~~~~ 192 (470)
.+|||||+++++|+|+|++++||+||+|+++..|+||+||++|.|+.|.+++|+++. +...++.|++.+..+++.++.
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 160 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCCh
Confidence 999999999999999999999999999999999999999999999999999999875 568889999999988877643
No 9
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.96 E-value=1.1e-28 Score=220.54 Aligned_cols=156 Identities=31% Similarity=0.584 Sum_probs=139.7
Q ss_pred cceEEEEEEcCccc-HHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCC
Q 012133 37 EGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK 114 (470)
Q Consensus 37 ~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~ 114 (470)
.+|+|+|+.++.++ |.+.|.++++.. ...++||||++++.++.++..|.. ++.+..+||+|++.+|.++++.|++++
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 35788888888777 999999999876 568999999999999999999985 789999999999999999999999999
Q ss_pred eeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCccccCCC
Q 012133 115 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 193 (470)
Q Consensus 115 ~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p 193 (470)
.+|||||+++++|+|+|++++||+|++|+++.+|+||+||+||.|++|.+++|+++.+...++.+++.++..++.++.+
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888877654
No 10
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.96 E-value=1.3e-28 Score=251.67 Aligned_cols=183 Identities=39% Similarity=0.563 Sum_probs=162.8
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
|+||||+|+++..+++.++.++..+.+. ........+.+.++.+....|...|.++++......++||||++++.++.
T Consensus 214 i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~ 291 (417)
T 2i4i_A 214 MMFSATFPKEIQMLARDFLDEYIFLAVG--RVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADS 291 (417)
T ss_dssp EEEESCCCHHHHHHHHHHCSSCEEEEEC------CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHcCCCEEEEeC--CCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHH
Confidence 5799999999999999999999877653 23345677888888888889999999998877667899999999999999
Q ss_pred HHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCC
Q 012133 81 VSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 159 (470)
Q Consensus 81 l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g 159 (470)
+++.|.+ ++.+..+||+|++++|.++++.|++++.+|||||+++++|||+|++++||+|++|++..+|+||+||+||.|
T Consensus 292 l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g 371 (417)
T 2i4i_A 292 LEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG 371 (417)
T ss_dssp HHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--
T ss_pred HHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCC
Confidence 9999985 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeChhhHHHHHHHHHHhCC
Q 012133 160 KEGTAILMFTSSQRRTVRSLERDVGC 185 (470)
Q Consensus 160 ~~g~~i~l~~~~~~~~~~~i~~~~~~ 185 (470)
+.|.+++|+++.+...++.|.+.+..
T Consensus 372 ~~g~~~~~~~~~~~~~~~~l~~~~~~ 397 (417)
T 2i4i_A 372 NLGLATSFFNERNINITKDLLDLLVE 397 (417)
T ss_dssp CCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred CCceEEEEEccccHHHHHHHHHHHHH
Confidence 99999999999998888888776643
No 11
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.96 E-value=1.3e-28 Score=251.40 Aligned_cols=190 Identities=34% Similarity=0.599 Sum_probs=170.3
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCccc-HHHHHHHHHHHHcCCCeEEEEeCchHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDAD 79 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~lVF~~t~~~~~ 79 (470)
|+||||+|+.+.++++.++.+|..+.+. ........+.++++.+.... |...|..++... ...++||||++++.++
T Consensus 214 i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~-~~~~~lVf~~~~~~~~ 290 (410)
T 2j0s_A 214 VLISATLPHEILEMTNKFMTDPIRILVK--RDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVD 290 (410)
T ss_dssp EEEESCCCHHHHTTGGGTCSSCEEECCC--GGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHH-TSSEEEEECSSHHHHH
T ss_pred EEEEcCCCHHHHHHHHHHcCCCEEEEec--CccccCCCceEEEEEeCcHHhHHHHHHHHHHhc-CCCcEEEEEcCHHHHH
Confidence 5899999999999999999999877553 23344567777777766554 888888888776 4579999999999999
Q ss_pred HHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCC
Q 012133 80 EVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 158 (470)
Q Consensus 80 ~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~ 158 (470)
.+++.|.. ++.+..+||+|++.+|.++++.|++++.+|||||+++++|||+|++++||+|++|++...|+||+||+||.
T Consensus 291 ~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~ 370 (410)
T 2j0s_A 291 WLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRY 370 (410)
T ss_dssp HHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGG
T ss_pred HHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCC
Confidence 99999985 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeChhhHHHHHHHHHHhCCCccccCCC
Q 012133 159 GKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 193 (470)
Q Consensus 159 g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p 193 (470)
|++|.+++|+++.+...++.|++.++..++.++..
T Consensus 371 g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (410)
T 2j0s_A 371 GRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 405 (410)
T ss_dssp GCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSC
T ss_pred CCceEEEEEecHHHHHHHHHHHHHhCCCceecccc
Confidence 99999999999999999999999999998887654
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.96 E-value=3e-28 Score=259.22 Aligned_cols=191 Identities=26% Similarity=0.406 Sum_probs=160.0
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeec--ccccccccceEEEEEEcCcc-cH-HHHHHHHHH---HHcCCCeEEEEeC
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVG--NQDEKLAEGIKLYAISTTAT-SK-RTILSDLIT---VYAKGGKTIVFTQ 73 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~--~~~~~~~~~i~~~~~~~~~~-~k-~~~l~~ll~---~~~~~~~~lVF~~ 73 (470)
|+||||+|+.+.++++.++.++..+.+.. .........+.+.++..... .+ ...+..++. ......++||||+
T Consensus 268 l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~ 347 (563)
T 3i5x_A 268 LLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAP 347 (563)
T ss_dssp EEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECS
T ss_pred EEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcC
Confidence 58999999999999999999887665432 22233445666666655432 22 233333333 3345679999999
Q ss_pred chHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHH
Q 012133 74 TKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 149 (470)
Q Consensus 74 t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~ 149 (470)
|++.++.+++.|.. .+.+..+|++|++.+|.++++.|++++.+|||||+++++|||+|+|++||+|++|.++++|+
T Consensus 348 s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~ 427 (563)
T 3i5x_A 348 TVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYI 427 (563)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHH
T ss_pred cHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhh
Confidence 99999999999974 68899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCccccC
Q 012133 150 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 191 (470)
Q Consensus 150 qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~ 191 (470)
||+|||||.|+.|.+++|+.+.+...++.|++.....++...
T Consensus 428 Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~ 469 (563)
T 3i5x_A 428 HRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQE 469 (563)
T ss_dssp HHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEE
T ss_pred hhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCccccc
Confidence 999999999999999999999999999999999888776544
No 13
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.96 E-value=9.7e-28 Score=243.95 Aligned_cols=189 Identities=30% Similarity=0.517 Sum_probs=171.8
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
|+||||+|..+.+++..++.+|..+.+.. ......+.+++..+....|...+..++... ...++||||++++.++.
T Consensus 198 i~lSAT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~-~~~~~lVf~~~~~~~~~ 273 (400)
T 1s2m_A 198 LLFSATFPLTVKEFMVKHLHKPYEINLME---ELTLKGITQYYAFVEERQKLHCLNTLFSKL-QINQAIIFCNSTNRVEL 273 (400)
T ss_dssp EEEESCCCHHHHHHHHHHCSSCEEESCCS---SCBCTTEEEEEEECCGGGHHHHHHHHHHHS-CCSEEEEECSSHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHcCCCeEEEecc---ccccCCceeEEEEechhhHHHHHHHHHhhc-CCCcEEEEEecHHHHHH
Confidence 57999999999999999999988776532 234567888888888888999888888765 56799999999999999
Q ss_pred HHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCC
Q 012133 81 VSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 159 (470)
Q Consensus 81 l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g 159 (470)
+++.|.. ++.+..+|++|++.+|.++++.|++++.+|||||+++++|+|+|++++||+|++|++..+|+||+||+||.|
T Consensus 274 l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g 353 (400)
T 1s2m_A 274 LAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFG 353 (400)
T ss_dssp HHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTT
T ss_pred HHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCC
Confidence 9999985 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeChhhHHHHHHHHHHhCCCccccCCC
Q 012133 160 KEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 193 (470)
Q Consensus 160 ~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p 193 (470)
++|.|++|+++.+...++.|++.++.+++.++..
T Consensus 354 ~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 387 (400)
T 1s2m_A 354 HLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 387 (400)
T ss_dssp CCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred CCceEEEEeccchHHHHHHHHHHhCCCccccccc
Confidence 9999999999999999999999999988876543
No 14
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.96 E-value=1.6e-28 Score=223.63 Aligned_cols=155 Identities=39% Similarity=0.548 Sum_probs=128.4
Q ss_pred cccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccc
Q 012133 33 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFR 111 (470)
Q Consensus 33 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~ 111 (470)
..++.+|+++++.++...|...|.++|+...+..++||||++++.++.+++.|.. ++.+..+||+|++.+|.++++.|+
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~ 93 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 93 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHH
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999999998875678999999999999999999985 789999999999999999999999
Q ss_pred cCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCc
Q 012133 112 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 187 (470)
Q Consensus 112 ~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~ 187 (470)
+++++|||||+++++|+|+|++++||+||+|+++.+|+||+||++|.|++|.+++|+++.+...++.+++.+....
T Consensus 94 ~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 169 (185)
T 2jgn_A 94 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 169 (185)
T ss_dssp HTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTT
T ss_pred cCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999888888888775443
No 15
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.95 E-value=1.2e-27 Score=243.90 Aligned_cols=195 Identities=31% Similarity=0.503 Sum_probs=165.9
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCc-ccHHHHHHHHHHHHcCCCeEEEEeCchHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLITVYAKGGKTIVFTQTKRDAD 79 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~ 79 (470)
|+||||+|+++..+++.++.++..+.+.. .......+.++++.+.. ..+...|..++... ...++||||++++.++
T Consensus 204 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~ 280 (412)
T 3fht_A 204 LLFSATFEDSVWKFAQKVVPDPNVIKLKR--EEETLDTIKQYYVLCSSRDEKFQALCNLYGAI-TIAQAMIFCHTRKTAS 280 (412)
T ss_dssp EEEESCCCHHHHHHHHHHSSSCEEECCCG--GGSSCTTEEEEEEECSSHHHHHHHHHHHHHHH-SSSEEEEECSSHHHHH
T ss_pred EEEEeecCHHHHHHHHHhcCCCeEEeecc--ccccccCceEEEEEcCChHHHHHHHHHHHhhc-CCCCEEEEeCCHHHHH
Confidence 57999999999999999999998887643 33445677777776654 46777787877765 5589999999999999
Q ss_pred HHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCC------ChhHHHHHh
Q 012133 80 EVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN------DPETFVHRS 152 (470)
Q Consensus 80 ~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~------~~~~y~qr~ 152 (470)
.+++.|.+ .+.+..+||+|++.+|.++++.|++++.+|||||+++++|||+|++++||+|++|+ +..+|+||+
T Consensus 281 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~ 360 (412)
T 3fht_A 281 WLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRI 360 (412)
T ss_dssp HHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHH
T ss_pred HHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeeccc
Confidence 99999985 78999999999999999999999999999999999999999999999999999994 678999999
Q ss_pred cccCCCCCCCeEEEeeChhh-HHHHHHHHHHhCCCccccCCCCHHHH
Q 012133 153 GRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVVEDV 198 (470)
Q Consensus 153 GR~gR~g~~g~~i~l~~~~~-~~~~~~i~~~~~~~~~~~~~p~~~~~ 198 (470)
||+||.|+.|.+++++++.+ ...++.+++.+...++.++.+..+++
T Consensus 361 GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 407 (412)
T 3fht_A 361 GRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEI 407 (412)
T ss_dssp TTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--------
T ss_pred CcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCccHHHH
Confidence 99999999999999998764 88999999999999988876654443
No 16
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.95 E-value=3.5e-27 Score=238.86 Aligned_cols=191 Identities=24% Similarity=0.463 Sum_probs=170.4
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
|+||||+|+.+..+++.++.+|..+.+... .......+.++++.+....|...|..+++.. ...++||||++++.++.
T Consensus 188 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~lvf~~~~~~~~~ 265 (391)
T 1xti_A 188 MMFSATLSKEIRPVCRKFMQDPMEIFVDDE-TKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIA 265 (391)
T ss_dssp EEEESSCCSTHHHHHHHHCSSCEEEECCCC-CCCCCTTCEEEEEECCGGGHHHHHHHHHHHS-CCSEEEEECSCHHHHHH
T ss_pred EEEEeeCCHHHHHHHHHHcCCCeEEEecCc-cccCcccceEEEEEcCchhHHHHHHHHHHhc-CCCcEEEEeCcHHHHHH
Confidence 579999999999999999999988865432 2334567788888888889999998888776 66899999999999999
Q ss_pred HHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCC
Q 012133 81 VSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 159 (470)
Q Consensus 81 l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g 159 (470)
+++.|.. ++.+..+|++|++++|.++++.|++++.+|||||+++++|+|+|++++||+|++|++...|+||+||++|.|
T Consensus 266 l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g 345 (391)
T 1xti_A 266 LAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFG 345 (391)
T ss_dssp HHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSC
T ss_pred HHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCC
Confidence 9999985 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeChh-hHHHHHHHHHHhCCCccccCCC
Q 012133 160 KEGTAILMFTSS-QRRTVRSLERDVGCKFEFVSPP 193 (470)
Q Consensus 160 ~~g~~i~l~~~~-~~~~~~~i~~~~~~~~~~~~~p 193 (470)
++|.+++++++. +...++.+++.+..+++.++..
T Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 346 TKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp CCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred CceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 999999999876 5677899999988888776543
No 17
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.95 E-value=4.7e-28 Score=247.12 Aligned_cols=190 Identities=34% Similarity=0.588 Sum_probs=153.7
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcc-cHHHHHHHHHHHHcCCCeEEEEeCchHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT-SKRTILSDLITVYAKGGKTIVFTQTKRDAD 79 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~ 79 (470)
|+||||+|..+..+++.++.+|..+.+. ........+.++++.+... .+...|..++... ...++||||++++.++
T Consensus 218 i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~ 294 (414)
T 3eiq_A 218 VLLSATMPSDVLEVTKKFMRDPIRILVK--KEELTLEGIRQFYINVEREEWKLDTLCDLYETL-TITQAVIFINTRRKVD 294 (414)
T ss_dssp EEECSCCCHHHHHHHTTTCSSCEEECCC--CCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSS-CCSSCEEECSCHHHHH
T ss_pred EEEEEecCHHHHHHHHHHcCCCEEEEec--CCccCCCCceEEEEEeChHHhHHHHHHHHHHhC-CCCcEEEEeCCHHHHH
Confidence 5899999999999999999998877653 2334456677777766554 4888888887665 5579999999999999
Q ss_pred HHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCC
Q 012133 80 EVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 158 (470)
Q Consensus 80 ~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~ 158 (470)
.+++.|.. .+.+..+|++|++++|.++++.|++++.+|||||+++++|||+|++++||+|++|++..+|+||+||+||.
T Consensus 295 ~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~ 374 (414)
T 3eiq_A 295 WLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRF 374 (414)
T ss_dssp HHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC---
T ss_pred HHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCC
Confidence 99999985 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeChhhHHHHHHHHHHhCCCccccCCC
Q 012133 159 GKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 193 (470)
Q Consensus 159 g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p 193 (470)
|++|.|++|+++.+...++.+++.++..++.++..
T Consensus 375 g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (414)
T 3eiq_A 375 GRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 409 (414)
T ss_dssp ----CEEEEECSTHHHHHHHHHHHTTCCCEECCC-
T ss_pred CCCceEEEEEcHHHHHHHHHHHHHHcCCccccChh
Confidence 99999999999999999999999999988877543
No 18
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.95 E-value=6.1e-27 Score=236.88 Aligned_cols=196 Identities=32% Similarity=0.567 Sum_probs=167.3
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCc-ccHHHHHHHHHHHHcCCCeEEEEeCchHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLITVYAKGGKTIVFTQTKRDAD 79 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~ 79 (470)
|+||||+|+.+..+++.++.++..+.+.. .......+.+.+..+.. ..+...+..++... ...++||||++++.++
T Consensus 181 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~ 257 (395)
T 3pey_A 181 VLFSATFADAVRQYAKKIVPNANTLELQT--NEVNVDAIKQLYMDCKNEADKFDVLTELYGLM-TIGSSIIFVATKKTAN 257 (395)
T ss_dssp EEEESCCCHHHHHHHHHHSCSCEEECCCG--GGCSCTTEEEEEEECSSHHHHHHHHHHHHTTT-TSSEEEEECSCHHHHH
T ss_pred EEEEecCCHHHHHHHHHhCCCCeEEEccc--cccccccccEEEEEcCchHHHHHHHHHHHHhc-cCCCEEEEeCCHHHHH
Confidence 57999999999999999999988876543 23345567777766644 46667777666554 5589999999999999
Q ss_pred HHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCC------ChhHHHHHh
Q 012133 80 EVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN------DPETFVHRS 152 (470)
Q Consensus 80 ~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~------~~~~y~qr~ 152 (470)
.+++.|.. ++.+..+|++|++.+|.++++.|++++.+|||||+++++|||+|++++||+|++|+ ++.+|+||+
T Consensus 258 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~ 337 (395)
T 3pey_A 258 VLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRI 337 (395)
T ss_dssp HHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHH
T ss_pred HHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhc
Confidence 99999985 78999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred cccCCCCCCCeEEEeeCh-hhHHHHHHHHHHhC-CCccccCCCCHHHHH
Q 012133 153 GRTGRAGKEGTAILMFTS-SQRRTVRSLERDVG-CKFEFVSPPVVEDVL 199 (470)
Q Consensus 153 GR~gR~g~~g~~i~l~~~-~~~~~~~~i~~~~~-~~~~~~~~p~~~~~~ 199 (470)
||+||.|+.|.+++++.+ .+...++.+++.+. ..+..++.+..+++.
T Consensus 338 GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 386 (395)
T 3pey_A 338 GRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVE 386 (395)
T ss_dssp TTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSSCHHHHH
T ss_pred cccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCChHHHHHHH
Confidence 999999999999999986 55678888888887 777777766655443
No 19
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.95 E-value=8.3e-27 Score=233.55 Aligned_cols=183 Identities=36% Similarity=0.606 Sum_probs=165.5
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
|+||||+|.++.++++.++.++..+... ....+.+.++.+....+.+.|..+++ ....++||||++++.++.
T Consensus 182 i~~SAT~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~lvf~~~~~~~~~ 253 (367)
T 1hv8_A 182 LLFSATMPREILNLAKKYMGDYSFIKAK------INANIEQSYVEVNENERFEALCRLLK--NKEFYGLVFCKTKRDTKE 253 (367)
T ss_dssp EEECSSCCHHHHHHHHHHCCSEEEEECC------SSSSSEEEEEECCGGGHHHHHHHHHC--STTCCEEEECSSHHHHHH
T ss_pred EEEeeccCHHHHHHHHHHcCCCeEEEec------CCCCceEEEEEeChHHHHHHHHHHHh--cCCCcEEEEECCHHHHHH
Confidence 5799999999999999999887776542 12466778888888888888877775 356799999999999999
Q ss_pred HHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCC
Q 012133 81 VSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 159 (470)
Q Consensus 81 l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g 159 (470)
+++.|.+ ++.+..+|+++++.+|.++++.|++++.+|||||+++++|+|+|++++||++++|+++.+|+||+||++|.|
T Consensus 254 l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g 333 (367)
T 1hv8_A 254 LASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAG 333 (367)
T ss_dssp HHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSS
T ss_pred HHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCC
Confidence 9999985 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeChhhHHHHHHHHHHhCCCccccC
Q 012133 160 KEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 191 (470)
Q Consensus 160 ~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~ 191 (470)
++|.+++++++.+...++.|++.++.+++.++
T Consensus 334 ~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 334 KKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp SCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred CccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 99999999999999999999999998887654
No 20
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.94 E-value=2.5e-28 Score=254.81 Aligned_cols=193 Identities=32% Similarity=0.498 Sum_probs=25.5
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCc-ccHHHHHHHHHHHHcCCCeEEEEeCchHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLITVYAKGGKTIVFTQTKRDAD 79 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~ 79 (470)
|+||||+|.++..+++.++.+|..|.+.. .......+.++++.+.. ..+...|..++... ...++||||++++.++
T Consensus 271 i~~SAT~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lvF~~s~~~~~ 347 (479)
T 3fmp_B 271 LLFSATFEDSVWKFAQKVVPDPNVIKLKR--EEETLDTIKQYYVLCSSRDEKFQALCNLYGAI-TIAQAMIFCHTRKTAS 347 (479)
T ss_dssp EEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------------------------------------
T ss_pred EEEeCCCCHHHHHHHHHHcCCCeEEeccc--cccCcCCceEEEEEeCCHHHHHHHHHHHHhhc-cCCceEEEeCcHHHHH
Confidence 58999999999999999999998887743 23345566666666554 46667777766554 4579999999999999
Q ss_pred HHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCC------ChhHHHHHh
Q 012133 80 EVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN------DPETFVHRS 152 (470)
Q Consensus 80 ~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~------~~~~y~qr~ 152 (470)
.+++.|.. .+.+..+||+|++.+|..+++.|++++.+|||||+++++|||+|++++||+||+|. +...|+||+
T Consensus 348 ~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~ 427 (479)
T 3fmp_B 348 WLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRI 427 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHh
Confidence 99999985 78899999999999999999999999999999999999999999999999999995 568999999
Q ss_pred cccCCCCCCCeEEEeeChhh-HHHHHHHHHHhCCCccccCCCCHH
Q 012133 153 GRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVVE 196 (470)
Q Consensus 153 GR~gR~g~~g~~i~l~~~~~-~~~~~~i~~~~~~~~~~~~~p~~~ 196 (470)
||+||.|+.|.+++|+++.+ ...++.|++.+..+++.+.....+
T Consensus 428 GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 472 (479)
T 3fmp_B 428 GRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 472 (479)
T ss_dssp ---------------------------------------------
T ss_pred cccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCccHH
Confidence 99999999999999998765 778888888888777766554433
No 21
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.89 E-value=1.3e-28 Score=221.17 Aligned_cols=153 Identities=29% Similarity=0.506 Sum_probs=139.9
Q ss_pred ceEEEEEEcCc-ccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCe
Q 012133 38 GIKLYAISTTA-TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF 115 (470)
Q Consensus 38 ~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~ 115 (470)
+|.|+++.++. +.|..+|..+++.. ...++||||++++.++.+++.|.. ++.+..+||+|++.+|.++++.|++++.
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 56778888877 88999999888764 457999999999999999999985 7889999999999999999999999999
Q ss_pred eEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCccccC
Q 012133 116 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 191 (470)
Q Consensus 116 ~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~ 191 (470)
+|||||+++++|+|+|++++||+|++|+++..|+||+||++|.|+.|.+++++++.+...++.+++.++..++...
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 157 (170)
Confidence 9999999999999999999999999999999999999999999999999999999999999999888777765543
No 22
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.93 E-value=1.5e-27 Score=241.61 Aligned_cols=189 Identities=33% Similarity=0.580 Sum_probs=25.0
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCccc-HHHHHHHHHHHHcCCCeEEEEeCchHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDAD 79 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~lVF~~t~~~~~ 79 (470)
|+||||+|+.+.++...++.+|..+.+.. .......+.++++.+.... +...+..+++.. ...++||||++++.++
T Consensus 197 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lVf~~~~~~~~ 273 (394)
T 1fuu_A 197 VLLSATMPNDVLEVTTKFMRNPVRILVKK--DELTLEGIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVE 273 (394)
T ss_dssp EEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------------------------------------
T ss_pred EEEEEecCHHHHHHHHHhcCCCeEEEecC--ccccCCCceEEEEEcCchhhHHHHHHHHHhcC-CCCcEEEEECCHHHHH
Confidence 57999999999999999999998886642 2333455666666555443 677777777654 4579999999999999
Q ss_pred HHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCC
Q 012133 80 EVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 158 (470)
Q Consensus 80 ~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~ 158 (470)
.+++.|.+ ++.+..+||+|++++|.++++.|++++.+|||||+++++|+|+|++++||++++|+++.+|+||+||+||.
T Consensus 274 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~ 353 (394)
T 1fuu_A 274 ELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRF 353 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCC
Confidence 99999985 68899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeChhhHHHHHHHHHHhCCCccccCC
Q 012133 159 GKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 192 (470)
Q Consensus 159 g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~ 192 (470)
|++|.|++++++.+...++.+++.++..++.++.
T Consensus 354 g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 387 (394)
T 1fuu_A 354 GRKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 387 (394)
T ss_dssp ----------------------------------
T ss_pred CCCceEEEEEchhHHHHHHHHHHHhCCcccccCc
Confidence 9999999999999999999999988887776544
No 23
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.93 E-value=2.6e-25 Score=236.89 Aligned_cols=175 Identities=19% Similarity=0.331 Sum_probs=142.5
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHH---cCCCeEEEEeCchHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY---AKGGKTIVFTQTKRD 77 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~---~~~~~~lVF~~t~~~ 77 (470)
|+||||+++.+.+.+..++..+..+.+... ....++.+.... ....+...+..+++.+ ....++||||+|++.
T Consensus 204 i~lSAT~~~~v~~~i~~~l~~~~~~~~~~~---~~r~nl~~~v~~-~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~ 279 (591)
T 2v1x_A 204 IGLTATATNHVLTDAQKILCIEKCFTFTAS---FNRPNLYYEVRQ-KPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKD 279 (591)
T ss_dssp EEEESSCCHHHHHHHHHHTTCCSCEEEECC---CCCTTEEEEEEE-CCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHH
T ss_pred EEEecCCCHHHHHHHHHHhCCCCcEEEecC---CCCcccEEEEEe-CCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHH
Confidence 579999999998888888875544433321 122344433333 2233334444444433 256899999999999
Q ss_pred HHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccC
Q 012133 78 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 156 (470)
Q Consensus 78 ~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~g 156 (470)
++++++.|.. ++.+..+|++|++++|.++++.|++++++|||||+++++|||+|+|++||+|++|.+++.|+||+||+|
T Consensus 280 ~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaG 359 (591)
T 2v1x_A 280 SEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 359 (591)
T ss_dssp HHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSC
T ss_pred HHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCC
Confidence 9999999985 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEeeChhhHHHHHHH
Q 012133 157 RAGKEGTAILMFTSSQRRTVRSL 179 (470)
Q Consensus 157 R~g~~g~~i~l~~~~~~~~~~~i 179 (470)
|.|+++.|++||.+.+...++.+
T Consensus 360 R~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 360 RDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp TTSSCEEEEEEECHHHHHHHHHH
T ss_pred cCCCCceEEEEEChHHHHHHHHH
Confidence 99999999999999887666655
No 24
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.92 E-value=4.7e-24 Score=224.58 Aligned_cols=174 Identities=20% Similarity=0.383 Sum_probs=142.4
Q ss_pred CEEeecCCHHHHHHHHHHc--CCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHH
Q 012133 1 MLFSATMPSWVKKLSRKYL--DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDA 78 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l--~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~ 78 (470)
|+||||+++.+.+.+...+ .+|..+ +... ...++.+.. .....+...|.+++... ...++||||+|++.+
T Consensus 178 i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~----~r~~l~~~v--~~~~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~ 249 (523)
T 1oyw_A 178 MALTATADDTTRQDIVRLLGLNDPLIQ-ISSF----DRPNIRYML--MEKFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKV 249 (523)
T ss_dssp EEEESCCCHHHHHHHHHHHTCCSCEEE-ECCC----CCTTEEEEE--EECSSHHHHHHHHHHHT-TTCCEEEECSSHHHH
T ss_pred EEEeCCCCHHHHHHHHHHhCCCCCeEE-eCCC----CCCceEEEE--EeCCCHHHHHHHHHHhc-CCCcEEEEeCCHHHH
Confidence 5799999998765444333 345433 2211 123443333 23356677777777654 567999999999999
Q ss_pred HHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCC
Q 012133 79 DEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 157 (470)
Q Consensus 79 ~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR 157 (470)
+.+++.|.. ++.+..+|++|++++|.++++.|++++.+|||||+++++|||+|+|++||+|++|+++++|+||+||+||
T Consensus 250 e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR 329 (523)
T 1oyw_A 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGR 329 (523)
T ss_dssp HHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCT
T ss_pred HHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccC
Confidence 999999985 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEeeChhhHHHHHHHHHH
Q 012133 158 AGKEGTAILMFTSSQRRTVRSLERD 182 (470)
Q Consensus 158 ~g~~g~~i~l~~~~~~~~~~~i~~~ 182 (470)
.|+++.|++|+++.+...++.+...
T Consensus 330 ~g~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 330 DGLPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp TSSCEEEEEEECHHHHHHHHHHHHT
T ss_pred CCCCceEEEEeCHHHHHHHHHHHhc
Confidence 9999999999999888777766543
No 25
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.92 E-value=7.5e-25 Score=216.85 Aligned_cols=172 Identities=29% Similarity=0.532 Sum_probs=144.4
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
++||||+|+.+.++...++.++..+... .....+.+.++.+....+..+ ..+.. ....++||||++++.++.
T Consensus 164 ~~~SAT~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~lvf~~~~~~~~~ 235 (337)
T 2z0m_A 164 GLFSATIPEEIRKVVKDFITNYEEIEAC-----IGLANVEHKFVHVKDDWRSKV--QALRE-NKDKGVIVFVRTRNRVAK 235 (337)
T ss_dssp EEEESCCCHHHHHHHHHHSCSCEEEECS-----GGGGGEEEEEEECSSSSHHHH--HHHHT-CCCSSEEEECSCHHHHHH
T ss_pred EEEeCcCCHHHHHHHHHhcCCceeeecc-----cccCCceEEEEEeChHHHHHH--HHHHh-CCCCcEEEEEcCHHHHHH
Confidence 3689999999999999999988777532 234556777777665544322 33332 356899999999999999
Q ss_pred HHHHHhcCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCC
Q 012133 81 VSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 160 (470)
Q Consensus 81 l~~~l~~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~ 160 (470)
+++.|. .+..+|++|++.+|.++++.|++++.+|||||+++++|+|+|++++||+|++|+++.+|+||+||+||.|+
T Consensus 236 l~~~l~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~ 312 (337)
T 2z0m_A 236 LVRLFD---NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGR 312 (337)
T ss_dssp HHTTCT---TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGC
T ss_pred HHHHhh---hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCC
Confidence 998886 58899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEeeChhhHHHHHHHHHHhC
Q 012133 161 EGTAILMFTSSQRRTVRSLERDVG 184 (470)
Q Consensus 161 ~g~~i~l~~~~~~~~~~~i~~~~~ 184 (470)
+|.+++++. .+...++.|++.++
T Consensus 313 ~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 313 KGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp CEEEEEEES-SCHHHHHHHC----
T ss_pred CceEEEEEe-CcHHHHHHHHHHhc
Confidence 999999999 78888888876654
No 26
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.92 E-value=6.8e-26 Score=238.09 Aligned_cols=193 Identities=31% Similarity=0.525 Sum_probs=136.4
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcC-cccHHHHHHHHHHHHcCCCeEEEEeCchHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATSKRTILSDLITVYAKGGKTIVFTQTKRDAD 79 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~ 79 (470)
|+||||+++.+..+.+.++.++..+.+... ......+.+.++.+. ...+...+..++... ..+++||||++++.++
T Consensus 295 i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~LVF~~s~~~a~ 371 (508)
T 3fho_A 295 VLFSATFSERVEKYAERFAPNANEIRLKTE--ELSVEGIKQLYMDCQSEEHKYNVLVELYGLL-TIGQSIIFCKKKDTAE 371 (508)
T ss_dssp EEEESCCSTHHHHHHHHHSTTCEEECCCCC--C----CCCCEEEEC--CHHHHHHHHHHHC----CCCEEEBCSSTTTTT
T ss_pred EEEeCCCCHHHHHHHHHhcCCCeEEEeccc--cCCcccceEEEEECCchHHHHHHHHHHHHhc-CCCcEEEEECCHHHHH
Confidence 589999999999999999999888765432 233344555555553 346677777777554 5589999999999999
Q ss_pred HHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCC------CChhHHHHHh
Q 012133 80 EVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP------NDPETFVHRS 152 (470)
Q Consensus 80 ~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p------~~~~~y~qr~ 152 (470)
.+++.|.+ .+.+..+|++|++.+|+++++.|++++.+|||||+++++|||+|++++||++++| .+...|+||+
T Consensus 372 ~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~ 451 (508)
T 3fho_A 372 EIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRI 451 (508)
T ss_dssp HHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTT
T ss_pred HHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHh
Confidence 99999985 6889999999999999999999999999999999999999999999999999999 7899999999
Q ss_pred cccCCCCCCCeEEEeeCh-hhHHHHHHHHHHhCCCccccCCCCHH
Q 012133 153 GRTGRAGKEGTAILMFTS-SQRRTVRSLERDVGCKFEFVSPPVVE 196 (470)
Q Consensus 153 GR~gR~g~~g~~i~l~~~-~~~~~~~~i~~~~~~~~~~~~~p~~~ 196 (470)
||+||.|+.|.+++|+.+ .+...++.+++.+...++.++....+
T Consensus 452 GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~ 496 (508)
T 3fho_A 452 GRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDDYE 496 (508)
T ss_dssp SCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC--------
T ss_pred hhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCccHH
Confidence 999999999999999984 56678899999998888877655433
No 27
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.91 E-value=2.3e-24 Score=235.93 Aligned_cols=164 Identities=17% Similarity=0.361 Sum_probs=133.4
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHH-HHHHHHHHH--cCCCeEEEEeCchHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVY--AKGGKTIVFTQTKRD 77 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~l~~ll~~~--~~~~~~lVF~~t~~~ 77 (470)
|+||||++.+ .+ ..|+.++..+.+... ...++++|+..+..++.. ++..++..+ ...+++||||+++++
T Consensus 244 Il~SAT~~~~--~l-~~~~~~~~vi~v~gr-----~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~ 315 (773)
T 2xau_A 244 IIMSATLDAE--KF-QRYFNDAPLLAVPGR-----TYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDE 315 (773)
T ss_dssp EEEESCSCCH--HH-HHHTTSCCEEECCCC-----CCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHH
T ss_pred EEEeccccHH--HH-HHHhcCCCcccccCc-----ccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHH
Confidence 5899999753 34 456666666665332 234777777766666543 333343332 356899999999999
Q ss_pred HHHHHHHHhc------------CCcEEEEeCCCCHHHHHHHHcccc-----cCCeeEEEecccccccCCCCCccEEEEec
Q 012133 78 ADEVSLALTS------------IIASEALHGDISQHQRERTLNGFR-----QGKFTVLVATDVAARGLDIPNVDLIIHYE 140 (470)
Q Consensus 78 ~~~l~~~l~~------------~~~~~~lhg~~~~~~R~~~~~~f~-----~g~~~iLVaTdv~~~Gidip~v~~VI~~~ 140 (470)
++.+++.|.+ .+.+.++||+|++++|.++++.|+ +|..+|||||+++++|||||+|++||+++
T Consensus 316 i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g 395 (773)
T 2xau_A 316 IEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPG 395 (773)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECS
T ss_pred HHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCC
Confidence 9999999873 467999999999999999999999 99999999999999999999999999988
Q ss_pred C------------------CCChhHHHHHhcccCCCCCCCeEEEeeChhhH
Q 012133 141 L------------------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 173 (470)
Q Consensus 141 ~------------------p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~ 173 (470)
+ |.+..+|+||+|||||. ++|.||+|+++.+.
T Consensus 396 ~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 396 FSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred CccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 7 89999999999999999 89999999987654
No 28
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.88 E-value=7.8e-23 Score=209.09 Aligned_cols=165 Identities=22% Similarity=0.398 Sum_probs=131.6
Q ss_pred CEEeec-CCHHHH-HHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHH
Q 012133 1 MLFSAT-MPSWVK-KLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDA 78 (470)
Q Consensus 1 llfSAT-lp~~i~-~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~ 78 (470)
|+|||| +|..+. .+.+.++. +.+. ........+.+.++.+ ++.+.|..+++.. +.++||||++++.+
T Consensus 197 i~~SAT~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~i~~~~~~~---~~~~~l~~~l~~~--~~~~lVF~~~~~~~ 265 (414)
T 3oiy_A 197 VVSSATAKPRGIRPLLFRDLLN----FTVG--RLVSVARNITHVRISS---RSKEKLVELLEIF--RDGILIFAQTEEEG 265 (414)
T ss_dssp EESSCCSSCCSSTTHHHHHHHS----CCSS--CCCCCCCSEEEEEESS---CCHHHHHHHHHHH--CSSEEEEESSHHHH
T ss_pred EEEecCCCcchhHHHHHHHhhc----cCcC--ccccccccchheeecc---CHHHHHHHHHHHc--CCCEEEEECCHHHH
Confidence 578999 676655 34444433 2221 2233456777777665 4556667777664 48999999999999
Q ss_pred HHHHHHHhc-CCcEE-EEeCCCCHHHHHHHHcccccCCeeEEEe----cccccccCCCCC-ccEEEEecCC--CChhHHH
Q 012133 79 DEVSLALTS-IIASE-ALHGDISQHQRERTLNGFRQGKFTVLVA----TDVAARGLDIPN-VDLIIHYELP--NDPETFV 149 (470)
Q Consensus 79 ~~l~~~l~~-~~~~~-~lhg~~~~~~R~~~~~~f~~g~~~iLVa----Tdv~~~Gidip~-v~~VI~~~~p--~~~~~y~ 149 (470)
+.+++.|.. ++.+. .+||+ +|+ ++.|++++++|||| |+++++|||+|+ |++||+|++| .+..+|+
T Consensus 266 ~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~ 339 (414)
T 3oiy_A 266 KELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYI 339 (414)
T ss_dssp HHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHH
T ss_pred HHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHH
Confidence 999999985 78888 89995 444 99999999999999 999999999999 9999999999 9999999
Q ss_pred HHhcccCCCC----CCCeEEEeeChhhHHHHHHHHHHhC
Q 012133 150 HRSGRTGRAG----KEGTAILMFTSSQRRTVRSLERDVG 184 (470)
Q Consensus 150 qr~GR~gR~g----~~g~~i~l~~~~~~~~~~~i~~~~~ 184 (470)
||+||+||.| ++|.+++|+ .+...++.|++.++
T Consensus 340 qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 340 QASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp HHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred HHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 9999999987 589999999 56677777777776
No 29
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.87 E-value=8.3e-23 Score=219.49 Aligned_cols=163 Identities=18% Similarity=0.201 Sum_probs=132.8
Q ss_pred EeecCCHHHHHHHHHHcCCCcEEEeecccccccccceE-EEEEEcCcccHHHHHHHHHHH-HcCCCeEEEEeCchHHHHH
Q 012133 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIK-LYAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 3 fSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~-~~~~~~~~~~k~~~l~~ll~~-~~~~~~~lVF~~t~~~~~~ 80 (470)
||+|...+...+.+.|..+ ++.+. . ......+. ..++.+...+|..+|..++.. +....++||||+|++.++.
T Consensus 373 mTGTa~te~~e~~~iY~l~--vv~IP--t-n~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~ 447 (844)
T 1tf5_A 373 MTGTAKTEEEEFRNIYNMQ--VVTIP--T-NRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSEL 447 (844)
T ss_dssp EESCCGGGHHHHHHHHCCC--EEECC--C-SSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHH
T ss_pred CCcccchhHHHHHHHhCCc--eEEec--C-CCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHH
Confidence 7899988888888887544 23332 1 11112222 124456667888888887754 4456789999999999999
Q ss_pred HHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCC--------CccEEEEecCCCChhHHHHH
Q 012133 81 VSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP--------NVDLIIHYELPNDPETFVHR 151 (470)
Q Consensus 81 l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip--------~v~~VI~~~~p~~~~~y~qr 151 (470)
|+..|.+ ++++.+||+++.+.+|..+.+.|+.+ .||||||+|+||+||+ ++.+||||++|.+.+.|+||
T Consensus 448 Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr 525 (844)
T 1tf5_A 448 ISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQL 525 (844)
T ss_dssp HHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHH
T ss_pred HHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhh
Confidence 9999985 89999999999999998888888766 6999999999999999 78899999999999999999
Q ss_pred hcccCCCCCCCeEEEeeChhh
Q 012133 152 SGRTGRAGKEGTAILMFTSSQ 172 (470)
Q Consensus 152 ~GR~gR~g~~g~~i~l~~~~~ 172 (470)
+|||||+|++|.+++|++..+
T Consensus 526 ~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 526 RGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp HTTSSGGGCCEEEEEEEETTS
T ss_pred cCccccCCCCCeEEEEecHHH
Confidence 999999999999999998765
No 30
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.86 E-value=7.9e-23 Score=222.77 Aligned_cols=129 Identities=22% Similarity=0.364 Sum_probs=81.6
Q ss_pred ccHHHHHHHHHHHH---cCCCeEEEEeCchHHHHHHHHHHhc-C----CcEEEE--------eCCCCHHHHHHHHccccc
Q 012133 49 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-I----IASEAL--------HGDISQHQRERTLNGFRQ 112 (470)
Q Consensus 49 ~~k~~~l~~ll~~~---~~~~~~lVF~~t~~~~~~l~~~l~~-~----~~~~~l--------hg~~~~~~R~~~~~~f~~ 112 (470)
..|...|.+++... ....++||||++++.++.|++.|.. . +.+..+ |++|++++|.+++++|++
T Consensus 379 ~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~ 458 (696)
T 2ykg_A 379 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 458 (696)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC---------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHh
Confidence 45777777887654 3557999999999999999999985 3 788888 569999999999999998
Q ss_pred -CCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHH
Q 012133 113 -GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179 (470)
Q Consensus 113 -g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i 179 (470)
|+++|||||+++++|||+|+|++||+||+|+++++|+||+|| ||. +.|.+++|++..+....+.+
T Consensus 459 ~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 459 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp --CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred cCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 998 88999999998776554444
No 31
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.86 E-value=5.8e-21 Score=205.94 Aligned_cols=130 Identities=22% Similarity=0.395 Sum_probs=114.1
Q ss_pred cHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccC
Q 012133 50 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 128 (470)
Q Consensus 50 ~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gi 128 (470)
.+..++..+......+.++||||+|+..++.|++.|.. ++.+..+|+++++.+|.++++.|++|+++|||||+++++|+
T Consensus 430 ~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~Gl 509 (661)
T 2d7d_A 430 QIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGL 509 (661)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTC
T ss_pred hHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCc
Confidence 33444455555555678999999999999999999985 78999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEecC-----CCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHH
Q 012133 129 DIPNVDLIIHYEL-----PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 180 (470)
Q Consensus 129 dip~v~~VI~~~~-----p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~ 180 (470)
|+|+|++||+++. |.+.++|+||+||+||. .+|.+++|+++.+..+.+.|+
T Consensus 510 Dip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 510 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp CCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred ccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 9999999999997 99999999999999998 799999999987655544443
No 32
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.86 E-value=5.2e-21 Score=201.34 Aligned_cols=164 Identities=21% Similarity=0.214 Sum_probs=130.2
Q ss_pred EEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEE-EEEEcCcccHHHHHHHHHHH-HcCCCeEEEEeCchHHHH
Q 012133 2 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRDAD 79 (470)
Q Consensus 2 lfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~-~~~~~~~lVF~~t~~~~~ 79 (470)
-||+|+..+...+.+.|-.+ +|.+.. ..+...+.+ ..+......|..+|...+.. +....++||||+|++.++
T Consensus 414 GMTGTa~te~~Ef~~iY~l~--vv~IPt---nkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE 488 (822)
T 3jux_A 414 GMTGTAKTEESEFVQVYGME--VVVIPT---HKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSE 488 (822)
T ss_dssp EEESSCGGGHHHHHHHSCCC--EEECCC---SSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHH
T ss_pred EECCCCchHHHHHHHHhCCe--EEEECC---CCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHH
Confidence 38999999888888777433 443321 122222322 23445667788887777754 345689999999999999
Q ss_pred HHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCC--------CccEEEEecCCCChhHHHH
Q 012133 80 EVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP--------NVDLIIHYELPNDPETFVH 150 (470)
Q Consensus 80 ~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip--------~v~~VI~~~~p~~~~~y~q 150 (470)
.|+..|.+ ++++.+||+++.+.++..+.+.++.+ .|+||||+|+||+||+ ++.+||++++|.+.+.|+|
T Consensus 489 ~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~q 566 (822)
T 3jux_A 489 LLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQ 566 (822)
T ss_dssp HHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHH
T ss_pred HHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHH
Confidence 99999985 89999999996666666666667655 6999999999999998 5569999999999999999
Q ss_pred HhcccCCCCCCCeEEEeeChhh
Q 012133 151 RSGRTGRAGKEGTAILMFTSSQ 172 (470)
Q Consensus 151 r~GR~gR~g~~g~~i~l~~~~~ 172 (470)
|+|||||+|.+|.+++|++..+
T Consensus 567 riGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 567 LRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp HHTTSSCSSCCCEEEEEEETTS
T ss_pred hhCccccCCCCeeEEEEechhH
Confidence 9999999999999999998876
No 33
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.85 E-value=1.6e-20 Score=202.61 Aligned_cols=131 Identities=24% Similarity=0.392 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCC
Q 012133 51 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLD 129 (470)
Q Consensus 51 k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gid 129 (470)
+..++..+......+.++||||+|+..++.|++.|.+ ++.+..+|++|++.+|.++++.|+.|+++|||||+++++|+|
T Consensus 425 ~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlD 504 (664)
T 1c4o_A 425 ILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLD 504 (664)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCC
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCcc
Confidence 3344444444455678999999999999999999985 789999999999999999999999999999999999999999
Q ss_pred CCCccEEEEecC-----CCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHH
Q 012133 130 IPNVDLIIHYEL-----PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 182 (470)
Q Consensus 130 ip~v~~VI~~~~-----p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~ 182 (470)
+|+|++||+++. |.+..+|+||+||+||. .+|.+++|+++.+..+.+.|++.
T Consensus 505 ip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~ 561 (664)
T 1c4o_A 505 IPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-ARGEVWLYADRVSEAMQRAIEET 561 (664)
T ss_dssp CTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTS-TTCEEEEECSSCCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 999999999997 89999999999999999 58999999998777666666543
No 34
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.85 E-value=8.4e-23 Score=210.58 Aligned_cols=115 Identities=23% Similarity=0.287 Sum_probs=96.1
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEE----
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH---- 138 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~---- 138 (470)
..+++||||++++.++.+++.|.. ++.+..+|| ++|+++++.|++++++|||||+++++|||+| +++||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~ 250 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTA 250 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCcc
Confidence 357999999999999999999985 789999999 4688999999999999999999999999999 999986
Q ss_pred ---------------ecCCCChhHHHHHhcccCCC-CCCCeEEEee---ChhhHHHHHHHHHHh
Q 012133 139 ---------------YELPNDPETFVHRSGRTGRA-GKEGTAILMF---TSSQRRTVRSLERDV 183 (470)
Q Consensus 139 ---------------~~~p~~~~~y~qr~GR~gR~-g~~g~~i~l~---~~~~~~~~~~i~~~~ 183 (470)
|+.|.+.++|+||+||+||. +++|.|++|+ ++.+...++.++..+
T Consensus 251 ~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 251 FKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp EEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred ceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 89999999999999999998 6899999997 566767777777665
No 35
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.85 E-value=4.7e-22 Score=212.53 Aligned_cols=157 Identities=17% Similarity=0.220 Sum_probs=122.6
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
|+||||+|..+..+++ .++..+.+.... +......++..+. . ..+++||||+|++.++.
T Consensus 312 il~SAT~~~~~~~~~~---~~~~~~~v~~~~---------------~~~~~~~ll~~l~-~--~~~~~LVF~~s~~~a~~ 370 (618)
T 2whx_A 312 IFMTATPPGSTDPFPQ---SNSPIEDIEREI---------------PERSWNTGFDWIT-D--YQGKTVWFVPSIKAGND 370 (618)
T ss_dssp EEECSSCTTCCCSSCC---CSSCEEEEECCC---------------CSSCCSSSCHHHH-H--CCSCEEEECSSHHHHHH
T ss_pred EEEECCCchhhhhhhc---cCCceeeecccC---------------CHHHHHHHHHHHH-h--CCCCEEEEECChhHHHH
Confidence 5899999987554332 245555443210 1111111222222 2 35799999999999999
Q ss_pred HHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEE--------------------EEe
Q 012133 81 VSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI--------------------IHY 139 (470)
Q Consensus 81 l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~V--------------------I~~ 139 (470)
+++.|.+ ++.+..+|++ +|+++++.|++++.+||||||++++|||+| |++| |+|
T Consensus 371 l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~ 445 (618)
T 2whx_A 371 IANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAG 445 (618)
T ss_dssp HHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEE
T ss_pred HHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcc
Confidence 9999985 7899999985 788899999999999999999999999997 9888 788
Q ss_pred cCCCChhHHHHHhcccCCCC-CCCeEEEeeC---hhhHHHHHHHHHHh
Q 012133 140 ELPNDPETFVHRSGRTGRAG-KEGTAILMFT---SSQRRTVRSLERDV 183 (470)
Q Consensus 140 ~~p~~~~~y~qr~GR~gR~g-~~g~~i~l~~---~~~~~~~~~i~~~~ 183 (470)
++|.+.++|+||+|||||.+ ++|.+++|++ +.+...++.+++.+
T Consensus 446 d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 446 PIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred cccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 88999999999999999996 5999999998 77777777777765
No 36
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.84 E-value=5.2e-22 Score=224.31 Aligned_cols=188 Identities=18% Similarity=0.284 Sum_probs=142.4
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
++||||++.. ..+++.++.++..+.+. .......++.++++ ..++...|..+++.. +.++||||+|++.|+.
T Consensus 219 ~l~SAT~t~~-~~~~~~~~~~~~~i~v~--~~~~~~~~i~~~~~---~~~k~~~L~~ll~~~--~~~~LVF~~t~~~a~~ 290 (1054)
T 1gku_B 219 CLMVSTATAK-KGKKAELFRQLLNFDIG--SSRITVRNVEDVAV---NDESISTLSSILEKL--GTGGIIYARTGEEAEE 290 (1054)
T ss_dssp EEEECCCCSC-CCTTHHHHHHHHCCCCS--CCEECCCCEEEEEE---SCCCTTTTHHHHTTS--CSCEEEEESSHHHHHH
T ss_pred EEEEecCCCc-hhHHHHHhhcceEEEcc--CcccCcCCceEEEe---chhHHHHHHHHHhhc--CCCEEEEEcCHHHHHH
Confidence 4899999987 65666666555555442 22334456777776 245666667777543 5789999999999999
Q ss_pred HHHHHhcCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEe----cccccccCCCCCc-cEEEEecCC-------------
Q 012133 81 VSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA----TDVAARGLDIPNV-DLIIHYELP------------- 142 (470)
Q Consensus 81 l~~~l~~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVa----Tdv~~~Gidip~v-~~VI~~~~p------------- 142 (470)
+++.|...+.+..+||+| .+++++|++|+++|||| |+++++|||+|+| ++||+|++|
T Consensus 291 l~~~L~~~~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~ 365 (1054)
T 1gku_B 291 IYESLKNKFRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLS 365 (1054)
T ss_dssp HHHTTTTSSCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSC
T ss_pred HHHHHhhccCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccCh
Confidence 999998668999999998 37788999999999999 9999999999995 999999999
Q ss_pred ----------------------------------------------------------CChhHHHHHhcccCCCCCCC--
Q 012133 143 ----------------------------------------------------------NDPETFVHRSGRTGRAGKEG-- 162 (470)
Q Consensus 143 ----------------------------------------------------------~~~~~y~qr~GR~gR~g~~g-- 162 (470)
.+..+|+||+|||||.+..|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~ 445 (1054)
T 1gku_B 366 PQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLT 445 (1054)
T ss_dssp HHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEEC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCc
Confidence 78999999999999987665
Q ss_pred eEEEeeChhhHHHHHHHHHHhC---CCccccCCCCHHHHHHH
Q 012133 163 TAILMFTSSQRRTVRSLERDVG---CKFEFVSPPVVEDVLES 201 (470)
Q Consensus 163 ~~i~l~~~~~~~~~~~i~~~~~---~~~~~~~~p~~~~~~~~ 201 (470)
.++.++...+...++.|++.++ ..+..+..+..+++++.
T Consensus 446 ~g~~~~~~~d~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 487 (1054)
T 1gku_B 446 KGASFLLEDDSELLSAFIERAKLYDIEFKSIDEVDFEKLSRE 487 (1054)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTTSSCCCBCSCCCHHHHHHH
T ss_pred eEEEEEEecCHHHHHHHHHHHhhccCccccCCcCCHHHHHHh
Confidence 4666666667778888888776 45555666666666554
No 37
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.84 E-value=2.2e-20 Score=209.47 Aligned_cols=167 Identities=17% Similarity=0.243 Sum_probs=145.4
Q ss_pred cCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc--CCcEEEEeCCCCHHHHHHHHcccccCC--eeEEEec
Q 012133 46 TTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGK--FTVLVAT 121 (470)
Q Consensus 46 ~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~R~~~~~~f~~g~--~~iLVaT 121 (470)
+....|...|..+++.. ...++||||+++..++.+++.|.. ++.+..+||+|++.+|++++++|++++ ++|||||
T Consensus 485 ~~~~~K~~~L~~ll~~~-~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT 563 (968)
T 3dmq_A 485 WNFDPRVEWLMGYLTSH-RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS 563 (968)
T ss_dssp TTTSHHHHHHHHHHHHT-SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS
T ss_pred cCccHHHHHHHHHHHhC-CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec
Confidence 34457888898888773 678999999999999999999983 789999999999999999999999998 9999999
Q ss_pred ccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHh--CCCccccCCCCHHHHH
Q 012133 122 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV--GCKFEFVSPPVVEDVL 199 (470)
Q Consensus 122 dv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~--~~~~~~~~~p~~~~~~ 199 (470)
+++++|||+|++++||+||+|+++..|+||+||++|.|+.+.+++++...+....+.|.+.+ +.++....+|...++.
T Consensus 564 ~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~~~~~i~ 643 (968)
T 3dmq_A 564 EIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIY 643 (968)
T ss_dssp CCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCSSHHHHH
T ss_pred chhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceecCCCCHHHHH
Confidence 99999999999999999999999999999999999999999877776655545555566666 5666677889999999
Q ss_pred HHHHHHHHHHHccc
Q 012133 200 ESSAEQVVATLNGV 213 (470)
Q Consensus 200 ~~~~~~~~~~l~~~ 213 (470)
+...+++...+...
T Consensus 644 ~~~~~~l~~~l~~~ 657 (968)
T 3dmq_A 644 DSVYNDLINYLASP 657 (968)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcc
Confidence 98888888887754
No 38
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.84 E-value=1e-20 Score=206.36 Aligned_cols=111 Identities=28% Similarity=0.530 Sum_probs=101.5
Q ss_pred HcCCCeEEEEeCchHHHHHHHHHHhcC-------------------------------CcEEEEeCCCCHHHHHHHHccc
Q 012133 62 YAKGGKTIVFTQTKRDADEVSLALTSI-------------------------------IASEALHGDISQHQRERTLNGF 110 (470)
Q Consensus 62 ~~~~~~~lVF~~t~~~~~~l~~~l~~~-------------------------------~~~~~lhg~~~~~~R~~~~~~f 110 (470)
+.+.+++||||+++++++.++..|... ..+.++|++|++++|..+++.|
T Consensus 239 ~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 318 (702)
T 2p6r_A 239 VAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAF 318 (702)
T ss_dssp HHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHH
T ss_pred HhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHH
Confidence 346789999999999999999888631 3588899999999999999999
Q ss_pred ccCCeeEEEecccccccCCCCCccEEEE----ec---CCCChhHHHHHhcccCCCC--CCCeEEEeeChhh
Q 012133 111 RQGKFTVLVATDVAARGLDIPNVDLIIH----YE---LPNDPETFVHRSGRTGRAG--KEGTAILMFTSSQ 172 (470)
Q Consensus 111 ~~g~~~iLVaTdv~~~Gidip~v~~VI~----~~---~p~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~~ 172 (470)
++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+||+||.| ..|.|+++++..+
T Consensus 319 ~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 319 RRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp HTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred HCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 9999999999999999999999999998 66 7899999999999999988 5899999999877
No 39
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.84 E-value=3.7e-21 Score=206.29 Aligned_cols=163 Identities=21% Similarity=0.187 Sum_probs=134.1
Q ss_pred EeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEE-EEEEcCcccHHHHHHHHHHH-HcCCCeEEEEeCchHHHHH
Q 012133 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 3 fSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~-~~~~~~~lVF~~t~~~~~~ 80 (470)
||+|...+...+.+.|-.+ +|.+. .......+.+ .++.+....|..+|.+++.. +....++||||+|++.++.
T Consensus 382 mTGTa~te~~ef~~iY~l~--vv~IP---tn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~ 456 (853)
T 2fsf_A 382 MTGTADTEAFEFSSIYKLD--TVVVP---TNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSEL 456 (853)
T ss_dssp EECTTCCCHHHHHHHHCCE--EEECC---CSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHH
T ss_pred CCCCchhHHHHHHHHhCCc--EEEcC---CCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHH
Confidence 7899988888888777433 33332 1222222222 24556677899888887754 4566799999999999999
Q ss_pred HHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCc--------------------------
Q 012133 81 VSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV-------------------------- 133 (470)
Q Consensus 81 l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v-------------------------- 133 (470)
|+..|.+ ++++.+||+++.+.++..+.++|+.| .|+||||+|+||+||+..
T Consensus 457 Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~ 534 (853)
T 2fsf_A 457 VSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQ 534 (853)
T ss_dssp HHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhh
Confidence 9999985 89999999999999999999999988 699999999999999973
Q ss_pred -----------cEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhh
Q 012133 134 -----------DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 172 (470)
Q Consensus 134 -----------~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~ 172 (470)
.+||+|+.|.+...|+||+|||||+|.+|.+++|++..+
T Consensus 535 ~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 535 VRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred hhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 599999999999999999999999999999999998776
No 40
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.83 E-value=1.2e-21 Score=210.77 Aligned_cols=115 Identities=17% Similarity=0.254 Sum_probs=103.2
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEE----
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH---- 138 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~---- 138 (470)
..+++||||++++.++.+++.|.. .+.+..|||. +|+++++.|++++++|||||+++++|||+| +++|||
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~ 483 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKS 483 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCc
Confidence 568999999999999999999985 7899999994 799999999999999999999999999999 999998
Q ss_pred ----------------ecCCCChhHHHHHhcccCCC-CCCCeEEEee---ChhhHHHHHHHHHHh
Q 012133 139 ----------------YELPNDPETFVHRSGRTGRA-GKEGTAILMF---TSSQRRTVRSLERDV 183 (470)
Q Consensus 139 ----------------~~~p~~~~~y~qr~GR~gR~-g~~g~~i~l~---~~~~~~~~~~i~~~~ 183 (470)
|++|.+.++|+||+||+||. +++|.|++|+ ++.+...++.++..+
T Consensus 484 ~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 484 VKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp CCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred ccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 67899999999999999999 7999999996 466666666666554
No 41
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.8e-20 Score=209.29 Aligned_cols=116 Identities=25% Similarity=0.408 Sum_probs=97.8
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-CC---------------------------------------cEEEEeCCCCHHHH
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-II---------------------------------------ASEALHGDISQHQR 103 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-~~---------------------------------------~~~~lhg~~~~~~R 103 (470)
...++||||++++.|+.++..|.. .+ .+.++||+|++.+|
T Consensus 440 ~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R 519 (1108)
T 3l9o_A 440 KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILK 519 (1108)
T ss_dssp TCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHH
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHH
Confidence 346999999999999999998853 11 17999999999999
Q ss_pred HHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCC--------ChhHHHHHhcccCCCC--CCCeEEEeeChh-h
Q 012133 104 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN--------DPETFVHRSGRTGRAG--KEGTAILMFTSS-Q 172 (470)
Q Consensus 104 ~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~--------~~~~y~qr~GR~gR~g--~~g~~i~l~~~~-~ 172 (470)
+.+++.|++|.++|||||+++++|||+|++++||+++.|+ ++.+|+||+|||||.| ..|.||+++.+. +
T Consensus 520 ~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~ 599 (1108)
T 3l9o_A 520 EVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKME 599 (1108)
T ss_dssp HHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCC
T ss_pred HHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcC
Confidence 9999999999999999999999999999999999877644 6667999999999999 689999998875 3
Q ss_pred HHHHHHH
Q 012133 173 RRTVRSL 179 (470)
Q Consensus 173 ~~~~~~i 179 (470)
...++.+
T Consensus 600 ~~~~~~l 606 (1108)
T 3l9o_A 600 PQVAKGM 606 (1108)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 42
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.83 E-value=2.2e-20 Score=197.50 Aligned_cols=124 Identities=20% Similarity=0.337 Sum_probs=69.5
Q ss_pred ccHHHHHHHHHHHH---cCCCeEEEEeCchHHHHHHHHHHhcC-------------CcEEEEeCCCCHHHHHHHHccccc
Q 012133 49 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-------------IASEALHGDISQHQRERTLNGFRQ 112 (470)
Q Consensus 49 ~~k~~~l~~ll~~~---~~~~~~lVF~~t~~~~~~l~~~l~~~-------------~~~~~lhg~~~~~~R~~~~~~f~~ 112 (470)
..|...|.++|... ....++||||+++..++.|++.|... .....+|++|++++|.+++++|++
T Consensus 371 ~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~ 450 (556)
T 4a2p_A 371 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 450 (556)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC---------------------------
T ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcc
Confidence 56788888887543 56789999999999999999999742 234566788999999999999999
Q ss_pred -CCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHH
Q 012133 113 -GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 174 (470)
Q Consensus 113 -g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~ 174 (470)
++++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. ++|.+++|+++.+..
T Consensus 451 ~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 451 SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp ---CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred cCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 999999999999999999999999999999999999999999 999 899999999986643
No 43
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.83 E-value=5.7e-20 Score=200.89 Aligned_cols=115 Identities=27% Similarity=0.469 Sum_probs=99.5
Q ss_pred HHHHHcCCCeEEEEeCchHHHHHHHHHHhcC-------------------------------------CcEEEEeCCCCH
Q 012133 58 LITVYAKGGKTIVFTQTKRDADEVSLALTSI-------------------------------------IASEALHGDISQ 100 (470)
Q Consensus 58 ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~-------------------------------------~~~~~lhg~~~~ 100 (470)
+.+.+...+++||||+++++++.+++.|.+. ..+.++|++|++
T Consensus 245 ~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~ 324 (715)
T 2va8_A 245 TLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSK 324 (715)
T ss_dssp HHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCH
T ss_pred HHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCH
Confidence 3344456789999999999999999998742 248999999999
Q ss_pred HHHHHHHcccccCCeeEEEecccccccCCCCCccEEEE----ec-------CCCChhHHHHHhcccCCCC--CCCeEEEe
Q 012133 101 HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE-------LPNDPETFVHRSGRTGRAG--KEGTAILM 167 (470)
Q Consensus 101 ~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~----~~-------~p~~~~~y~qr~GR~gR~g--~~g~~i~l 167 (470)
++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+||+||.+ .+|.|+++
T Consensus 325 ~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 404 (715)
T 2va8_A 325 ALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVV 404 (715)
T ss_dssp HHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEE
Confidence 99999999999999999999999999999999999999 99 8999999999999999987 58999999
Q ss_pred eChhh
Q 012133 168 FTSSQ 172 (470)
Q Consensus 168 ~~~~~ 172 (470)
++..+
T Consensus 405 ~~~~~ 409 (715)
T 2va8_A 405 VRDKE 409 (715)
T ss_dssp CSCGG
T ss_pred eCCch
Confidence 98765
No 44
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.83 E-value=3.4e-20 Score=202.77 Aligned_cols=127 Identities=24% Similarity=0.344 Sum_probs=107.8
Q ss_pred HcCCCeEEEEeCchHHHHHHHHHHhcC----------------------------------CcEEEEeCCCCHHHHHHHH
Q 012133 62 YAKGGKTIVFTQTKRDADEVSLALTSI----------------------------------IASEALHGDISQHQRERTL 107 (470)
Q Consensus 62 ~~~~~~~lVF~~t~~~~~~l~~~l~~~----------------------------------~~~~~lhg~~~~~~R~~~~ 107 (470)
+.+.+++||||++++.++.++..|.+. ..+.++|++|++++|..++
T Consensus 234 ~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 313 (720)
T 2zj8_A 234 IRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVE 313 (720)
T ss_dssp HHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred HhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 346689999999999999999988631 2489999999999999999
Q ss_pred cccccCCeeEEEecccccccCCCCCccEEEE----ec----CCCChhHHHHHhcccCCCC--CCCeEEEeeChhhHHHHH
Q 012133 108 NGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE----LPNDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTVR 177 (470)
Q Consensus 108 ~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~----~~----~p~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~~~~~~~ 177 (470)
+.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+||+||.+ ..|.|+++++..+.. .
T Consensus 314 ~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~--~ 391 (720)
T 2zj8_A 314 ENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR--E 391 (720)
T ss_dssp HHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHH--H
T ss_pred HHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHH--H
Confidence 9999999999999999999999999999998 77 6899999999999999987 579999999987622 2
Q ss_pred HHHHHhCCCcccc
Q 012133 178 SLERDVGCKFEFV 190 (470)
Q Consensus 178 ~i~~~~~~~~~~~ 190 (470)
.+++.+...++.+
T Consensus 392 ~~~~~~~~~~~~i 404 (720)
T 2zj8_A 392 VMNHYIFGKPEKL 404 (720)
T ss_dssp HHHHHTTSCCCCC
T ss_pred HHHHHhcCCCCCc
Confidence 3344554444444
No 45
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.83 E-value=2.4e-20 Score=210.90 Aligned_cols=182 Identities=20% Similarity=0.352 Sum_probs=136.4
Q ss_pred CEEeec-CCHHHHH-HHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHH
Q 012133 1 MLFSAT-MPSWVKK-LSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDA 78 (470)
Q Consensus 1 llfSAT-lp~~i~~-l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~ 78 (470)
|+|||| .|..+.. +.+.++. +.+. .......++.+.++.+ ++...|..+++.. +.++||||++++.+
T Consensus 254 ll~SAT~~p~~~~~~~~~~~l~----i~v~--~~~~~~~~i~~~~~~~---~k~~~L~~ll~~~--~~~~LVF~~s~~~a 322 (1104)
T 4ddu_A 254 VVSSATAKPRGIRPLLFRDLLN----FTVG--RLVSVARNITHVRISS---RSKEKLVELLEIF--RDGILIFAQTEEEG 322 (1104)
T ss_dssp EEECBSSCCCSSTTHHHHHHTC----CCCC--BCCCCCCCEEEEEESC---CCHHHHHHHHHHH--CSSEEEEESSSHHH
T ss_pred EEEcCCCCcHHHHHHHhhccee----EEec--cCCCCcCCceeEEEec---CHHHHHHHHHHhc--CCCEEEEECcHHHH
Confidence 589999 6766553 3333333 3322 2334466788888766 4566667777664 38999999999999
Q ss_pred HHHHHHHhc-CCcEE-EEeCCCCHHHHHHHHcccccCCeeEEEe----cccccccCCCCC-ccEEEEecCCC--------
Q 012133 79 DEVSLALTS-IIASE-ALHGDISQHQRERTLNGFRQGKFTVLVA----TDVAARGLDIPN-VDLIIHYELPN-------- 143 (470)
Q Consensus 79 ~~l~~~l~~-~~~~~-~lhg~~~~~~R~~~~~~f~~g~~~iLVa----Tdv~~~Gidip~-v~~VI~~~~p~-------- 143 (470)
+.++..|.. ++.+. .+||+ |++ +++|++|+++|||| |+++++|||+|+ |++|||||+|.
T Consensus 323 ~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~ 396 (1104)
T 4ddu_A 323 KELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELD 396 (1104)
T ss_dssp HHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSS
T ss_pred HHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccc
Confidence 999999985 78898 99993 555 99999999999999 999999999999 99999999998
Q ss_pred ----------------------------------------------------------------ChhHHHHHhcccCCCC
Q 012133 144 ----------------------------------------------------------------DPETFVHRSGRTGRAG 159 (470)
Q Consensus 144 ----------------------------------------------------------------~~~~y~qr~GR~gR~g 159 (470)
|..+|+||+|||||.+
T Consensus 397 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~ 476 (1104)
T 4ddu_A 397 KAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRIL 476 (1104)
T ss_dssp SCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhccc
Confidence 8889999999999954
Q ss_pred ----CCCeEEEeeChhhHHHHHHHHHHhC----CCccccCCCCHHHHHHH
Q 012133 160 ----KEGTAILMFTSSQRRTVRSLERDVG----CKFEFVSPPVVEDVLES 201 (470)
Q Consensus 160 ----~~g~~i~l~~~~~~~~~~~i~~~~~----~~~~~~~~p~~~~~~~~ 201 (470)
..|.+++++ ++...++.|++.+. ..+..+.....+++++.
T Consensus 477 ~gg~~~Glsi~~~--~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (1104)
T 4ddu_A 477 NGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEIIEEAEANWKELVHE 524 (1104)
T ss_dssp TTEECCEEEEEEC--CCHHHHHHHHHHHHHHTCCCEEEGGGCCHHHHHHH
T ss_pred CCCcccceEEEEE--ecHHHHHHHHHHHhhhcccccccccccCHHHHHHH
Confidence 356777777 55566777766664 34444443444554443
No 46
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.83 E-value=6.5e-20 Score=202.62 Aligned_cols=123 Identities=20% Similarity=0.338 Sum_probs=72.2
Q ss_pred cHHHHHHHHHHHH---cCCCeEEEEeCchHHHHHHHHHHhcC-------------CcEEEEeCCCCHHHHHHHHccccc-
Q 012133 50 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-------------IASEALHGDISQHQRERTLNGFRQ- 112 (470)
Q Consensus 50 ~k~~~l~~ll~~~---~~~~~~lVF~~t~~~~~~l~~~l~~~-------------~~~~~lhg~~~~~~R~~~~~~f~~- 112 (470)
.|...|..+|... ....++||||+++..++.|++.|... ..+..+|++|++.+|.+++++|++
T Consensus 613 ~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~ 692 (797)
T 4a2q_A 613 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 692 (797)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC---------------------------
T ss_pred hHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhcc
Confidence 3555566666532 45689999999999999999999742 345667899999999999999999
Q ss_pred CCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHH
Q 012133 113 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 174 (470)
Q Consensus 113 g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~ 174 (470)
+.++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. ++|.+++|+++.+..
T Consensus 693 g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 693 KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp -CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred CCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 999999999999999999999999999999999999999999 999 899999999886643
No 47
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.83 E-value=2.2e-20 Score=193.07 Aligned_cols=123 Identities=33% Similarity=0.545 Sum_probs=109.3
Q ss_pred ccHHHHHHHHHHHH---cCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeC--------CCCHHHHHHHHcccccCCee
Q 012133 49 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG--------DISQHQRERTLNGFRQGKFT 116 (470)
Q Consensus 49 ~~k~~~l~~ll~~~---~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg--------~~~~~~R~~~~~~f~~g~~~ 116 (470)
..|...|.++|..+ ....++||||++++.++.+++.|.. ++.+..+|| +|++++|++++++|++++.+
T Consensus 342 ~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~ 421 (494)
T 1wp9_A 342 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN 421 (494)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS
T ss_pred ChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCce
Confidence 34666667777654 4678999999999999999999985 789999999 99999999999999999999
Q ss_pred EEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhh
Q 012133 117 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 172 (470)
Q Consensus 117 iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~ 172 (470)
|||||+++++|||+|++++||+|++|+++..|+||+||++|.|+ |.+++|+++.+
T Consensus 422 vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t 476 (494)
T 1wp9_A 422 VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGT 476 (494)
T ss_dssp EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTS
T ss_pred EEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCC
Confidence 99999999999999999999999999999999999999999987 99999998754
No 48
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.82 E-value=8.9e-20 Score=195.91 Aligned_cols=164 Identities=21% Similarity=0.212 Sum_probs=133.1
Q ss_pred EeecCCHHHHHHHHHHcCCCcEEEeecccccccccceE-EEEEEcCcccHHHHHHHHHHH-HcCCCeEEEEeCchHHHHH
Q 012133 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIK-LYAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 3 fSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~-~~~~~~~~~~k~~~l~~ll~~-~~~~~~~lVF~~t~~~~~~ 80 (470)
||.|+..+...+.+.|-.+ ++.+.. ......+. ..++.+....|..+|...+.. +....++||||+|++.++.
T Consensus 401 MTGTa~te~~Ef~~iY~l~--vv~IPt---n~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~ 475 (922)
T 1nkt_A 401 MTGTAQTEAAELHEIYKLG--VVSIPT---NMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEY 475 (922)
T ss_dssp EESCCGGGHHHHHHHHCCE--EEECCC---SSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHH
T ss_pred cccCchhHHHHHHHHhCCC--eEEeCC---CCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHH
Confidence 7899988888888877433 343321 11122222 124456667888888777754 4456789999999999999
Q ss_pred HHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCc--------------------------
Q 012133 81 VSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV-------------------------- 133 (470)
Q Consensus 81 l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v-------------------------- 133 (470)
|+..|.+ ++++.+||+++.+.++..+.+.|+.| .|+||||+|+||+||+.+
T Consensus 476 Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (922)
T 1nkt_A 476 LSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYE 553 (922)
T ss_dssp HHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHH
T ss_pred HHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhH
Confidence 9999985 89999999999888888888999987 699999999999999975
Q ss_pred --------------------------cEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhH
Q 012133 134 --------------------------DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 173 (470)
Q Consensus 134 --------------------------~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~ 173 (470)
.+||+|+.|.+...|+||+|||||+|.+|.+++|++..+.
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 554 AAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999999999999999999999999987664
No 49
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.82 E-value=3e-19 Score=200.30 Aligned_cols=116 Identities=25% Similarity=0.416 Sum_probs=103.1
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-CC---------------------------------------cEEEEeCCCCHHHH
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-II---------------------------------------ASEALHGDISQHQR 103 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-~~---------------------------------------~~~~lhg~~~~~~R 103 (470)
...++||||+++..|+.+++.|.. .+ .+.++||+|++.+|
T Consensus 342 ~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR 421 (1010)
T 2xgj_A 342 KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILK 421 (1010)
T ss_dssp TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHH
Confidence 345899999999999999988864 22 27899999999999
Q ss_pred HHHHcccccCCeeEEEecccccccCCCCCccEEEE----ecC----CCChhHHHHHhcccCCCCC--CCeEEEeeChh-h
Q 012133 104 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YEL----PNDPETFVHRSGRTGRAGK--EGTAILMFTSS-Q 172 (470)
Q Consensus 104 ~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~----~~~----p~~~~~y~qr~GR~gR~g~--~g~~i~l~~~~-~ 172 (470)
+.+++.|++|.++|||||+++++|||+|++++||+ ||. |.++.+|+||+||+||.|. .|.|++++++. +
T Consensus 422 ~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e 501 (1010)
T 2xgj_A 422 EVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKME 501 (1010)
T ss_dssp HHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCC
T ss_pred HHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCC
Confidence 99999999999999999999999999999999999 999 8999999999999999985 59999999865 5
Q ss_pred HHHHHHH
Q 012133 173 RRTVRSL 179 (470)
Q Consensus 173 ~~~~~~i 179 (470)
...++.+
T Consensus 502 ~~~~~~l 508 (1010)
T 2xgj_A 502 PQVAKGM 508 (1010)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4555554
No 50
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.82 E-value=1.8e-20 Score=199.42 Aligned_cols=123 Identities=25% Similarity=0.380 Sum_probs=106.0
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEE-----
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII----- 137 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI----- 137 (470)
..+++||||+|++.++++++.|.+ ++.+..+||+|++++ |+++..+||||||++++|||+| |++||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~ 466 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTC 466 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcc
Confidence 568999999999999999999985 789999999999875 4455669999999999999997 99988
Q ss_pred -----Eec-----------CCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHH--H--HHHHHHhCCCccccCCCCHH
Q 012133 138 -----HYE-----------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT--V--RSLERDVGCKFEFVSPPVVE 196 (470)
Q Consensus 138 -----~~~-----------~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~--~--~~i~~~~~~~~~~~~~p~~~ 196 (470)
||| +|.+.++|+||+||+|| +++|. ++|+++.+... + +.|++..+..+.+..+|..+
T Consensus 467 ~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~~~l~~~~ 543 (666)
T 3o8b_A 467 VTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAE 543 (666)
T ss_dssp EEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHTSCCCHHH
T ss_pred cccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCcccccCCchH
Confidence 677 89999999999999999 89999 99998877554 4 77777777777777666543
No 51
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.82 E-value=1.9e-21 Score=201.51 Aligned_cols=102 Identities=19% Similarity=0.318 Sum_probs=92.9
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEE-----
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----- 138 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~----- 138 (470)
.+++||||++++.++.+++.|.. ++.+..+|++ +|+++++.|++++.+|||||+++++|||+|+ ++||+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~ 264 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSV 264 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEEC
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccc
Confidence 57999999999999999999985 7899999995 7889999999999999999999999999999 99999
Q ss_pred ---------------ecCCCChhHHHHHhcccCCCCC-CCeEEEeeChh
Q 012133 139 ---------------YELPNDPETFVHRSGRTGRAGK-EGTAILMFTSS 171 (470)
Q Consensus 139 ---------------~~~p~~~~~y~qr~GR~gR~g~-~g~~i~l~~~~ 171 (470)
|++|.+..+|+||+||+||.|+ +|.+++|+++.
T Consensus 265 ~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 265 KPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7799999999999999999997 99999999875
No 52
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.81 E-value=9.8e-20 Score=207.04 Aligned_cols=164 Identities=18% Similarity=0.261 Sum_probs=134.1
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
|+||||+++....++...+.++..|... ......+..+.... .+..++..++..+..++++||||++++.++.
T Consensus 755 l~lSATp~p~~l~~~~~~~~~~~~i~~~----~~~r~~i~~~~~~~---~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~ 827 (1151)
T 2eyq_A 755 LTLTATPIPRTLNMAMSGMRDLSIIATP----PARRLAVKTFVREY---DSMVVREAILREILRGGQVYYLYNDVENIQK 827 (1151)
T ss_dssp EEEESSCCCHHHHHHHTTTSEEEECCCC----CCBCBCEEEEEEEC---CHHHHHHHHHHHHTTTCEEEEECCCSSCHHH
T ss_pred EEEcCCCChhhHHHHHhcCCCceEEecC----CCCccccEEEEecC---CHHHHHHHHHHHHhcCCeEEEEECCHHHHHH
Confidence 5799999887777776666655444321 11123444444432 3445556666666678999999999999999
Q ss_pred HHHHHhc---CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecC-CCChhHHHHHhcccC
Q 012133 81 VSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL-PNDPETFVHRSGRTG 156 (470)
Q Consensus 81 l~~~l~~---~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~-p~~~~~y~qr~GR~g 156 (470)
+++.|.+ .+.+..+||+|++.+|++++++|++++++|||||+++++|||+|++++||+++. ++++..|+||+||+|
T Consensus 828 l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvg 907 (1151)
T 2eyq_A 828 AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVG 907 (1151)
T ss_dssp HHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccC
Confidence 9999985 468999999999999999999999999999999999999999999999999988 579999999999999
Q ss_pred CCCCCCeEEEeeChh
Q 012133 157 RAGKEGTAILMFTSS 171 (470)
Q Consensus 157 R~g~~g~~i~l~~~~ 171 (470)
|.++.|.|++++.+.
T Consensus 908 R~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 908 RSHHQAYAWLLTPHP 922 (1151)
T ss_dssp BTTBCEEEEEEECCG
T ss_pred cCCCceEEEEEECCc
Confidence 999999999998764
No 53
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.81 E-value=3.8e-20 Score=191.40 Aligned_cols=101 Identities=19% Similarity=0.304 Sum_probs=93.5
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEec---
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE--- 140 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~--- 140 (470)
.+++||||+|++.++.+++.|.+ ++.+..+|+++. +++++.|++++.+|||||+++++|||+|+ ++||||+
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~ 262 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCL 262 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcc
Confidence 57999999999999999999985 788999999853 57999999999999999999999999999 9999998
Q ss_pred -----------------CCCChhHHHHHhcccCCCCC-CCeEEEeeCh
Q 012133 141 -----------------LPNDPETFVHRSGRTGRAGK-EGTAILMFTS 170 (470)
Q Consensus 141 -----------------~p~~~~~y~qr~GR~gR~g~-~g~~i~l~~~ 170 (470)
.|.+.++|+||+||+||.|+ +|.+++|+..
T Consensus 263 ~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 263 KPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999997 8899888754
No 54
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.81 E-value=2.8e-20 Score=202.70 Aligned_cols=103 Identities=28% Similarity=0.518 Sum_probs=89.0
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc-------CCcEEEEeCC--------CCHHHHHHHHcccccCCeeEEEecccccccCC
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS-------IIASEALHGD--------ISQHQRERTLNGFRQGKFTVLVATDVAARGLD 129 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~-------~~~~~~lhg~--------~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gid 129 (470)
..++||||++++.++.|++.|.. ++.+..+||+ |++.+|.+++++|++++++|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 68999999999999999999985 4889999999 99999999999999999999999999999999
Q ss_pred CCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeCh
Q 012133 130 IPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 170 (470)
Q Consensus 130 ip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~ 170 (470)
+|+|++||+||+|+++..|+||+||++|.| .+++++..
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 999999999999999999999999975543 55555443
No 55
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.81 E-value=4.2e-20 Score=195.17 Aligned_cols=129 Identities=24% Similarity=0.355 Sum_probs=92.1
Q ss_pred ccHHHHHHHHHHHH---cCCCeEEEEeCchHHHHHHHHHHhcC-----Cc--------EEEEeCCCCHHHHHHHHccccc
Q 012133 49 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-----IA--------SEALHGDISQHQRERTLNGFRQ 112 (470)
Q Consensus 49 ~~k~~~l~~ll~~~---~~~~~~lVF~~t~~~~~~l~~~l~~~-----~~--------~~~lhg~~~~~~R~~~~~~f~~ 112 (470)
..|...|..+|... ....++||||++++.++.|++.|... +. ...+||+|++++|.+++++|++
T Consensus 370 ~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~ 449 (555)
T 3tbk_A 370 NPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRA 449 (555)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhc
Confidence 46777888877643 35689999999999999999999742 33 3445669999999999999999
Q ss_pred -CCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHH
Q 012133 113 -GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 179 (470)
Q Consensus 113 -g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i 179 (470)
++++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 450 ~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 450 SGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp --CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 999 89999999998776544443
No 56
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.79 E-value=5e-20 Score=200.78 Aligned_cols=172 Identities=17% Similarity=0.279 Sum_probs=124.0
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchH----
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKR---- 76 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~---- 76 (470)
|+||||+++....+. +..+.....+. . .......+..++ .+......++..+.+......+++|||++.+
T Consensus 520 L~mSATp~p~tl~~~--~~g~~~~s~i~-~-~p~~r~~i~~~~--~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~ 593 (780)
T 1gm5_A 520 LVMSATPIPRSMALA--FYGDLDVTVID-E-MPPGRKEVQTML--VPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDK 593 (780)
T ss_dssp EEEESSCCCHHHHHH--HTCCSSCEEEC-C-CCSSCCCCEECC--CCSSTHHHHHHHHHHHTTTSCCBCCBCCCC-----
T ss_pred EEEeCCCCHHHHHHH--HhCCcceeeee-c-cCCCCcceEEEE--eccchHHHHHHHHHHHHhcCCcEEEEecchhhhhh
Confidence 589999877654433 33332211111 1 111112333322 2333444444445455566789999999764
Q ss_pred ----HHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCC-ChhH
Q 012133 77 ----DADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN-DPET 147 (470)
Q Consensus 77 ----~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~-~~~~ 147 (470)
.++.+++.|.. .+.+..+||+|++++|++++++|++|+++|||||+++++|||+|++++||++++|. +...
T Consensus 594 l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~ 673 (780)
T 1gm5_A 594 LNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQ 673 (780)
T ss_dssp ---CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTH
T ss_pred hhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHH
Confidence 46778888876 35789999999999999999999999999999999999999999999999999996 7889
Q ss_pred HHHHhcccCCCCCCCeEEEeeChhhHHHHHH
Q 012133 148 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 178 (470)
Q Consensus 148 y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~ 178 (470)
|+||+||+||.+++|.|++++++.+....+.
T Consensus 674 l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~r 704 (780)
T 1gm5_A 674 LHQLRGRVGRGGQEAYCFLVVGDVGEEAMER 704 (780)
T ss_dssp HHHHHHTSCCSSTTCEEECCCCSCCHHHHHH
T ss_pred HHHHhcccCcCCCCCEEEEEECCCChHHHHH
Confidence 9999999999999999999998533333333
No 57
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.78 E-value=4.1e-19 Score=170.98 Aligned_cols=124 Identities=15% Similarity=0.273 Sum_probs=97.1
Q ss_pred CcccHHHHHHHHHHHH-cCCCeEEEEeCchHHHHHHHHHHhc--CCcEEEEeCCCCHHHHHHHHcccccC-Cee-EEEec
Q 012133 47 TATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQG-KFT-VLVAT 121 (470)
Q Consensus 47 ~~~~k~~~l~~ll~~~-~~~~~~lVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~R~~~~~~f~~g-~~~-iLVaT 121 (470)
....|+..|.++|... ..+.++||||+++..++.|+..|.. ++.+..+||++++++|.++++.|+++ .++ +||+|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 4568999999988654 4568999999999999999999974 78899999999999999999999998 676 78999
Q ss_pred ccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeE--EEeeCh
Q 012133 122 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTA--ILMFTS 170 (470)
Q Consensus 122 dv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~--i~l~~~ 170 (470)
+++++|||++.+++||+||+||++..|+||+||++|.|+...+ +.|++.
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~ 223 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 223 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEET
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeC
Confidence 9999999999999999999999999999999999999977665 444444
No 58
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.77 E-value=1.5e-18 Score=194.40 Aligned_cols=123 Identities=20% Similarity=0.345 Sum_probs=75.5
Q ss_pred ccHHHHHHHHHHHH---cCCCeEEEEeCchHHHHHHHHHHhcC-------------CcEEEEeCCCCHHHHHHHHccccc
Q 012133 49 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-------------IASEALHGDISQHQRERTLNGFRQ 112 (470)
Q Consensus 49 ~~k~~~l~~ll~~~---~~~~~~lVF~~t~~~~~~l~~~l~~~-------------~~~~~lhg~~~~~~R~~~~~~f~~ 112 (470)
..|...|.++|... ....++||||++++.++.|++.|... ..+..+||+|++.+|.+++++|++
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~ 691 (936)
T 4a2w_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (936)
T ss_dssp CHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC--------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhc
Confidence 46778888888664 35689999999999999999999842 235567899999999999999999
Q ss_pred -CCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhH
Q 012133 113 -GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 173 (470)
Q Consensus 113 -g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~ 173 (470)
+.++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. +.|.+++|++..+.
T Consensus 692 ~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 692 SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp --CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred cCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 999999999999999999999999999999999999999999 999 88999999987654
No 59
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.76 E-value=4.7e-19 Score=182.11 Aligned_cols=100 Identities=19% Similarity=0.283 Sum_probs=88.7
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccE-------
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL------- 135 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~------- 135 (470)
..+++||||++++.++.+++.|.+ .+.+..+||+ +|++++++|++++++|||||+++++|||+| +.+
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~ 244 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKT 244 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCcc
Confidence 357999999999999999999985 7899999997 578899999999999999999999999999 554
Q ss_pred ----------EEEecCCCChhHHHHHhcccCCCCC-CCeEEEee
Q 012133 136 ----------IIHYELPNDPETFVHRSGRTGRAGK-EGTAILMF 168 (470)
Q Consensus 136 ----------VI~~~~p~~~~~y~qr~GR~gR~g~-~g~~i~l~ 168 (470)
||+++.|.+.++|+||+||+||.+. .+.++++.
T Consensus 245 ~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 245 IKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred ccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 6788999999999999999999985 45555554
No 60
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.75 E-value=1.1e-17 Score=187.50 Aligned_cols=126 Identities=25% Similarity=0.327 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CC---------------------------------------cE
Q 012133 52 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II---------------------------------------AS 91 (470)
Q Consensus 52 ~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~---------------------------------------~~ 91 (470)
...|..++... ...++||||++++.|+.++..|.. ++ .+
T Consensus 324 ~~~li~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi 402 (997)
T 4a4z_A 324 WPEIVNYLRKR-ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGI 402 (997)
T ss_dssp HHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCe
Confidence 33444444443 457999999999999999998864 22 47
Q ss_pred EEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCC---------CChhHHHHHhcccCCCC--C
Q 012133 92 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP---------NDPETFVHRSGRTGRAG--K 160 (470)
Q Consensus 92 ~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p---------~~~~~y~qr~GR~gR~g--~ 160 (470)
.++|++|++.+|+.+++.|++|.++|||||+++++|||+|++.+|| +++| .++.+|+||+|||||.| .
T Consensus 403 ~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi-~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~ 481 (997)
T 4a4z_A 403 AVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIF-SSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDS 481 (997)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEE-SCSEEEETTEEEECCHHHHHHHHGGGCCTTTCS
T ss_pred eeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEE-eccccccCccCCCCCHHHHhHHhcccccCCCCc
Confidence 9999999999999999999999999999999999999999955544 4444 49999999999999988 6
Q ss_pred CCeEEEeeC--hhhHHHHHHH
Q 012133 161 EGTAILMFT--SSQRRTVRSL 179 (470)
Q Consensus 161 ~g~~i~l~~--~~~~~~~~~i 179 (470)
.|.||+++. ..+...++.+
T Consensus 482 ~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 482 TGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp SEEEEEECCSSCCCHHHHHHH
T ss_pred ceEEEEecCCCcchHHHHHHH
Confidence 788888883 3344555544
No 61
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.75 E-value=5.8e-20 Score=191.03 Aligned_cols=114 Identities=25% Similarity=0.452 Sum_probs=101.7
Q ss_pred cccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccccccc
Q 012133 48 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 127 (470)
Q Consensus 48 ~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~G 127 (470)
...|...|.+++... ...++||||++++.++.+++.|. +..+|+++++.+|++++++|++++++|||||+++++|
T Consensus 333 ~~~k~~~l~~~l~~~-~~~k~lvF~~~~~~~~~l~~~l~----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~G 407 (472)
T 2fwr_A 333 SKNKIRKLREILERH-RKDKIIIFTRHNELVYRISKVFL----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEG 407 (472)
T ss_dssp CSHHHHHHHHHHHHT-SSSCBCCBCSCHHHHHHHHHHTT----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSS
T ss_pred ChHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHhC----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcC
Confidence 345677888888774 57899999999999999999874 6679999999999999999999999999999999999
Q ss_pred CCCCCccEEEEecCCCChhHHHHHhcccCCCCCC-CeEEE
Q 012133 128 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE-GTAIL 166 (470)
Q Consensus 128 idip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~-g~~i~ 166 (470)
+|+|++++||++++|+++..|+||+||++|.++. ..+++
T Consensus 408 ldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i 447 (472)
T 2fwr_A 408 IDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVL 447 (472)
T ss_dssp SCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEE
T ss_pred cccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEE
Confidence 9999999999999999999999999999999844 34443
No 62
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.74 E-value=2e-17 Score=193.68 Aligned_cols=176 Identities=15% Similarity=0.203 Sum_probs=130.0
Q ss_pred CEEeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHH-------HHHHHHHHHHcCCCeEEEEeC
Q 012133 1 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR-------TILSDLITVYAKGGKTIVFTQ 73 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~-------~~l~~ll~~~~~~~~~lVF~~ 73 (470)
|+||||+|+ .++++++.-.++..+........ +..++++....+..... ..+...+..+...+++||||+
T Consensus 1087 I~lSATl~N-~~dla~WL~~~~~~~~~~~~~~R--PvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~ 1163 (1724)
T 4f92_B 1087 VALSSSLSN-AKDVAHWLGCSATSTFNFHPNVR--PVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVP 1163 (1724)
T ss_dssp EEEESCBTT-HHHHHHHHTCCSTTEEECCGGGC--SSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEES
T ss_pred EEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCC--CCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCC
Confidence 579999985 56777765444433322222222 22344433332222221 223344556667789999999
Q ss_pred chHHHHHHHHHHhc-----------------------------------CCcEEEEeCCCCHHHHHHHHcccccCCeeEE
Q 012133 74 TKRDADEVSLALTS-----------------------------------IIASEALHGDISQHQRERTLNGFRQGKFTVL 118 (470)
Q Consensus 74 t~~~~~~l~~~l~~-----------------------------------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iL 118 (470)
|++.|+.++..|.. ...+..+|++|++.+|..+++.|++|.++||
T Consensus 1164 sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VL 1243 (1724)
T 4f92_B 1164 SRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVV 1243 (1724)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEE
T ss_pred CHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEE
Confidence 99999988876631 0258899999999999999999999999999
Q ss_pred EecccccccCCCCCccEEEE----e------cCCCChhHHHHHhcccCCCCC--CCeEEEeeChhhHHHHHHH
Q 012133 119 VATDVAARGLDIPNVDLIIH----Y------ELPNDPETFVHRSGRTGRAGK--EGTAILMFTSSQRRTVRSL 179 (470)
Q Consensus 119 VaTdv~~~Gidip~v~~VI~----~------~~p~~~~~y~qr~GR~gR~g~--~g~~i~l~~~~~~~~~~~i 179 (470)
|||+++++|||+|.+.+||. | ..|.++.+|+||+|||||+|. .|.|++++.+.+...++++
T Consensus 1244 vaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1244 VASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp EEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHH
T ss_pred EEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHH
Confidence 99999999999999999993 2 346789999999999999985 7999999999887777665
No 63
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.71 E-value=3.9e-17 Score=175.39 Aligned_cols=122 Identities=20% Similarity=0.284 Sum_probs=104.2
Q ss_pred CeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHccccc--CCeeEEEecccccccCCCCCccEEEEecC-
Q 012133 66 GKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDVAARGLDIPNVDLIIHYEL- 141 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~--g~~~iLVaTdv~~~Gidip~v~~VI~~~~- 141 (470)
...||||+|+++++.+++.|.+ .+.+.++||+|++++|.++++.|++ +.++|||||+++++|||+ +|++||++++
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcc
Confidence 4558899999999999999985 7899999999999999999999999 889999999999999999 8999999999
Q ss_pred -------------CCChhHHHHHhcccCCCCCC---CeEEEeeChhhHHHHHHHHHHhCCCccc
Q 012133 142 -------------PNDPETFVHRSGRTGRAGKE---GTAILMFTSSQRRTVRSLERDVGCKFEF 189 (470)
Q Consensus 142 -------------p~~~~~y~qr~GR~gR~g~~---g~~i~l~~~~~~~~~~~i~~~~~~~~~~ 189 (470)
|.+..+|+||+|||||.|+. |.|++++.. +...++.+.......++.
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~-d~~~~~~~~~~~~~~i~~ 462 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE-DLSLLKEILKRPVDPIRA 462 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT-HHHHHHHHHHSCCCCCCC
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc-hHHHHHHHHhcCcchhhh
Confidence 78999999999999999854 677776554 444556665554444444
No 64
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.71 E-value=3.3e-17 Score=175.12 Aligned_cols=101 Identities=21% Similarity=0.302 Sum_probs=88.5
Q ss_pred HHHHcCCCeEEEEeCchHHHHHHHHHHhcCC---------cEEEEeCCCCHHHHHHHHcccccCCee---EEEecccccc
Q 012133 59 ITVYAKGGKTIVFTQTKRDADEVSLALTSII---------ASEALHGDISQHQRERTLNGFRQGKFT---VLVATDVAAR 126 (470)
Q Consensus 59 l~~~~~~~~~lVF~~t~~~~~~l~~~l~~~~---------~~~~lhg~~~~~~R~~~~~~f~~g~~~---iLVaTdv~~~ 126 (470)
+.......++||||++++.|+.+++.|.+.. .+..+||++++ +|++++++|++++.+ |||||+++++
T Consensus 433 l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~ 511 (590)
T 3h1t_A 433 MKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTT 511 (590)
T ss_dssp HHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTT
T ss_pred HHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhc
Confidence 3333456899999999999999999997421 27889999864 799999999998766 8999999999
Q ss_pred cCCCCCccEEEEecCCCChhHHHHHhcccCCCCC
Q 012133 127 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 160 (470)
Q Consensus 127 Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~ 160 (470)
|||+|++++||++++|+++..|+||+||++|.+.
T Consensus 512 GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 512 GVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred CccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 9999999999999999999999999999999764
No 65
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.70 E-value=2e-17 Score=173.54 Aligned_cols=117 Identities=14% Similarity=0.170 Sum_probs=98.4
Q ss_pred HHHHHHHHHHH-cCC-CeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEec-cccccc
Q 012133 52 RTILSDLITVY-AKG-GKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT-DVAARG 127 (470)
Q Consensus 52 ~~~l~~ll~~~-~~~-~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaT-dv~~~G 127 (470)
...+.+++... ... .++|||++ .+.++.|++.|.+ ...+..+||+|++.+|+++++.|++++.+||||| +++++|
T Consensus 333 ~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~G 411 (510)
T 2oca_A 333 NKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTG 411 (510)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcc
Confidence 33444554433 233 45666666 8889999999986 4689999999999999999999999999999999 999999
Q ss_pred CCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeC
Q 012133 128 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 169 (470)
Q Consensus 128 idip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~ 169 (470)
||+|++++||++++|+++..|+||+||+||.++.+.++++++
T Consensus 412 iDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 412 ISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999999999998775555544
No 66
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.70 E-value=3.1e-17 Score=191.96 Aligned_cols=175 Identities=20% Similarity=0.344 Sum_probs=126.8
Q ss_pred CEEeecCCHHHHHHHHHHcC-CCc-EEEeecccccccccceEEEEEEcCcccH---HHHHHHHH----HHHcCCCeEEEE
Q 012133 1 MLFSATMPSWVKKLSRKYLD-NPL-NIDLVGNQDEKLAEGIKLYAISTTATSK---RTILSDLI----TVYAKGGKTIVF 71 (470)
Q Consensus 1 llfSATlp~~i~~l~~~~l~-~p~-~i~~~~~~~~~~~~~i~~~~~~~~~~~k---~~~l~~ll----~~~~~~~~~lVF 71 (470)
|.+|||+|+ ++++++ |+. ++. .+.+..... + +..++++++....... ...+..++ ..+....++|||
T Consensus 248 I~LSATl~N-~~dvA~-wL~~~~~~~~~~~~~~~-R-PvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF 323 (1724)
T 4f92_B 248 IGLSATLPN-YEDVAT-FLRVDPAKGLFYFDNSF-R-PVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVF 323 (1724)
T ss_dssp EEEECSCTT-HHHHHH-HTTCCHHHHEEECCGGG-C-SSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEE
T ss_pred EEEecccCC-HHHHHH-HhCCCCCCCeEEECCCC-c-cCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEE
Confidence 579999985 566766 444 322 222222111 1 2345555554444322 22233222 222345799999
Q ss_pred eCchHHHHHHHHHHhcC--------------------------------------CcEEEEeCCCCHHHHHHHHcccccC
Q 012133 72 TQTKRDADEVSLALTSI--------------------------------------IASEALHGDISQHQRERTLNGFRQG 113 (470)
Q Consensus 72 ~~t~~~~~~l~~~l~~~--------------------------------------~~~~~lhg~~~~~~R~~~~~~f~~g 113 (470)
|+|++.|+.+++.|.+. ..+.++|++|++.+|..+++.|++|
T Consensus 324 ~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G 403 (1724)
T 4f92_B 324 VHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADK 403 (1724)
T ss_dssp CSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCC
Confidence 99999999888877420 2478999999999999999999999
Q ss_pred CeeEEEecccccccCCCCCccEEEE----ecC------CCChhHHHHHhcccCCCC--CCCeEEEeeChhhHHHHHHH
Q 012133 114 KFTVLVATDVAARGLDIPNVDLIIH----YEL------PNDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTVRSL 179 (470)
Q Consensus 114 ~~~iLVaTdv~~~Gidip~v~~VI~----~~~------p~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~~~~~~~~i 179 (470)
.++|||||+++++|||+|.+++||. |++ |.++.+|+||+|||||.| ..|.+++++.+.+...+..+
T Consensus 404 ~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 404 HIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSL 481 (1724)
T ss_dssp CCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHH
T ss_pred CCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHH
Confidence 9999999999999999999999995 543 568999999999999987 57999999988776555554
No 67
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.65 E-value=4.8e-16 Score=162.61 Aligned_cols=118 Identities=17% Similarity=0.305 Sum_probs=101.2
Q ss_pred ccHHHHHHHHHHHH-cCCCeEEEEeCchHHHHHHHHHHhc--CCcEEEEeCCCCHHHHHHHHcccccC-Cee-EEEeccc
Q 012133 49 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQG-KFT-VLVATDV 123 (470)
Q Consensus 49 ~~k~~~l~~ll~~~-~~~~~~lVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~R~~~~~~f~~g-~~~-iLVaTdv 123 (470)
..|...+.+++... ..+.++||||+++..++.+++.|.. ++.+..+||++++++|+++++.|+++ ..+ +||+|++
T Consensus 324 s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~ 403 (500)
T 1z63_A 324 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 403 (500)
T ss_dssp CHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCC
T ss_pred chhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeccc
Confidence 56777777777654 4668999999999999999999984 78899999999999999999999988 455 7999999
Q ss_pred ccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEE
Q 012133 124 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 166 (470)
Q Consensus 124 ~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~ 166 (470)
+++|+|+|.+++||+||+||++..|+||+||++|.|+...+++
T Consensus 404 ~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v 446 (500)
T 1z63_A 404 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIV 446 (500)
T ss_dssp C-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEE
T ss_pred ccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEE
Confidence 9999999999999999999999999999999999997766543
No 68
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.60 E-value=4.7e-15 Score=159.77 Aligned_cols=134 Identities=12% Similarity=0.254 Sum_probs=112.0
Q ss_pred ccHHHHHHHHHHHHc--CCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCe---eEEEecc
Q 012133 49 TSKRTILSDLITVYA--KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF---TVLVATD 122 (470)
Q Consensus 49 ~~k~~~l~~ll~~~~--~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~---~iLVaTd 122 (470)
+.|+.+|..++.... ...++||||+++..++.|+..|.. ++.+..+||++++++|++++++|+++.. .+||+|+
T Consensus 398 s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 477 (644)
T 1z3i_X 398 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 477 (644)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred ChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc
Confidence 467788888886652 468999999999999999999984 8999999999999999999999999865 4899999
Q ss_pred cccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeEEE--eeChh--hHHHHHHHHHH
Q 012133 123 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL--MFTSS--QRRTVRSLERD 182 (470)
Q Consensus 123 v~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~--l~~~~--~~~~~~~i~~~ 182 (470)
++++|||++.+++||+||+||++..|+|++||++|.|+...+++ |++.. |...++.++.+
T Consensus 478 a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K 541 (644)
T 1z3i_X 478 AGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHK 541 (644)
T ss_dssp GSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHH
T ss_pred cccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997665444 44432 33344444333
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.9e-14 Score=158.72 Aligned_cols=137 Identities=18% Similarity=0.322 Sum_probs=116.2
Q ss_pred ccHHHHHHHHHHHH-cCCCeEEEEeCchHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHcccccCCe---eEEEeccc
Q 012133 49 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKF---TVLVATDV 123 (470)
Q Consensus 49 ~~k~~~l~~ll~~~-~~~~~~lVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~f~~g~~---~iLVaTdv 123 (470)
..|+.+|..+|..+ ..+.++||||..+..++.|...|. .++.+..|||.+++.+|+++++.|+++.. .+||+|.+
T Consensus 555 s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~a 634 (800)
T 3mwy_W 555 SGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRA 634 (800)
T ss_dssp CHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHH
T ss_pred ChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccc
Confidence 46788888888766 345799999999999999999998 48999999999999999999999998554 59999999
Q ss_pred ccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCCCeE--EEeeChh--hHHHHHHHHHHhCC
Q 012133 124 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTA--ILMFTSS--QRRTVRSLERDVGC 185 (470)
Q Consensus 124 ~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~--i~l~~~~--~~~~~~~i~~~~~~ 185 (470)
++.|||++.+++||+||+||++..++||+||+.|.|+...+ +.|++.. |...++.+.++...
T Consensus 635 gg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l 700 (800)
T 3mwy_W 635 GGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMIL 700 (800)
T ss_dssp HTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTS
T ss_pred ccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999966544 4455543 55666666666543
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.39 E-value=2.1e-12 Score=144.47 Aligned_cols=119 Identities=11% Similarity=0.110 Sum_probs=92.3
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc-C------------CcE-EEEeCC----------C----------CHH---------
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS-I------------IAS-EALHGD----------I----------SQH--------- 101 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~-~------------~~~-~~lhg~----------~----------~~~--------- 101 (470)
..++||||+++..|..+++.|.+ . +.+ .++|++ | ++.
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 35899999999999999999864 1 445 455542 2 322
Q ss_pred --------------------HHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecCCCChhHHHHHhcccCCCCCC
Q 012133 102 --------------------QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE 161 (470)
Q Consensus 102 --------------------~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~ 161 (470)
+|..++++|++++++|||+|+++.+|+|+|.+ .|+++|.|.+...|+|++||++|....
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCC
Confidence 47889999999999999999999999999999 788999999999999999999998743
Q ss_pred ----CeEEEeeChhhHHHHHHHHHHhCC
Q 012133 162 ----GTAILMFTSSQRRTVRSLERDVGC 185 (470)
Q Consensus 162 ----g~~i~l~~~~~~~~~~~i~~~~~~ 185 (470)
|.++.|+.. .....+.|..+...
T Consensus 696 ~K~~G~IVdf~~~-~~~l~~Al~~y~~~ 722 (1038)
T 2w00_A 696 TKTFGNIVTFRDL-ERSTIDAITLFGDK 722 (1038)
T ss_dssp TCCSEEEEESSCC-HHHHHHHHHHTSCS
T ss_pred CCCcEEEEEcccc-HHHHHHHHHHHhCC
Confidence 666666653 33444455444433
No 71
>2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5
Probab=99.06 E-value=3.9e-10 Score=88.50 Aligned_cols=89 Identities=22% Similarity=0.294 Sum_probs=73.7
Q ss_pred HcCCCCCCCCcccccCCCCeEEEEEeeCCccccCCcchhhHHhHhhhhcC-cCcCccccEEEeecCccceeEeecCHHHH
Q 012133 244 LSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYP-TAADEIGKIHIIADDRVQGAVFDLPEEIA 322 (470)
Q Consensus 244 l~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~~~~Ig~I~i~~~~~~~ga~fdv~~~~a 322 (470)
++|+++ +++|||+++.++++|+.+.... ..-.|..++.+|++..+ ...++|++|++++|. +|++||||++.+
T Consensus 2 ~SG~te-~~~RSLLt~~eG~~Tl~l~~~~----~i~~~~y~w~~L~~~l~e~~~~~v~~m~l~~d~--~GavFDvP~e~~ 74 (92)
T 2e29_A 2 SSGSSG-FEPRSLITSDKGFVTMTLESLE----EIQDVSCAWKELNRKLSSNAVSQITRMCLLKGN--MGVCFDVPTTES 74 (92)
T ss_dssp CCSCSC-CCCCCCCCCCCCEEEEEEECSS----CCSSTHHHHHHHHHHSCHHHHTTCEEEEECTTS--SEEEEEEEHHHH
T ss_pred CCCcCC-CCCcccccCCCCCEEEEEecCC----cccchHHHHHHHHHhcCHHHHhhhCeEEEecCC--CEEEEECcHHHH
Confidence 467887 5669999999999999998876 35678999999998554 456789999999986 599999999999
Q ss_pred HHHHhhcCCCCCeEEEe
Q 012133 323 KELLNKQIPPGNTISKI 339 (470)
Q Consensus 323 ~~i~~~~~~~g~~i~~~ 339 (470)
+++++.+....+.++++
T Consensus 75 ~~~~~~~~~~~~~l~v~ 91 (92)
T 2e29_A 75 ERLQAEWHDSDWILSVP 91 (92)
T ss_dssp HHHHHHCCSSSCEEECC
T ss_pred HHHHhhCCCCceEEEec
Confidence 99999977634666664
No 72
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=98.57 E-value=1.9e-08 Score=59.51 Aligned_cols=17 Identities=47% Similarity=1.300 Sum_probs=15.9
Q ss_pred ccccCCCCCccCCCCCC
Q 012133 454 ACFNCGKSGHRASECPN 470 (470)
Q Consensus 454 ~c~~c~~~gh~~~~c~~ 470 (470)
.||+||++||||||||+
T Consensus 4 ~Cf~CG~~GH~ardC~~ 20 (26)
T 1dsq_A 4 VCFSCGKTGHIKRDCKE 20 (26)
T ss_dssp BCTTTCCBSSCTTTTTC
T ss_pred eeEeCCCCCcccccCCC
Confidence 49999999999999995
No 73
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.56 E-value=8.4e-07 Score=95.84 Aligned_cols=163 Identities=20% Similarity=0.220 Sum_probs=111.8
Q ss_pred EeecCCHHHHHHHHHHcCCCcEEEeecccccccccceEE-EEEEcCcccHHHHH-HHHHHHHcCCCeEEEEeCchHHHHH
Q 012133 3 FSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTIL-SDLITVYAKGGKTIVFTQTKRDADE 80 (470)
Q Consensus 3 fSATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l-~~ll~~~~~~~~~lVF~~t~~~~~~ 80 (470)
||.|...+...+.+.|--+. |.+.. +.+.....+ -.+......|..++ ..+...+..+.++||+|.|.+..+.
T Consensus 384 MTGTA~tE~~Ef~~iY~l~V--v~IPT---n~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~ 458 (997)
T 2ipc_A 384 MTGTAKTEEKEFQEIYGMDV--VVVPT---NRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSER 458 (997)
T ss_dssp EESSCGGGHHHHHHHHCCCE--EECCC---SSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHH
T ss_pred cCCCchHHHHHHHHHhCCCE--EEcCC---CCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHH
Confidence 78999888888887775552 33321 111121221 22334445666554 4555566778899999999999999
Q ss_pred HHHHHh--------------------------------------------------------------------------
Q 012133 81 VSLALT-------------------------------------------------------------------------- 86 (470)
Q Consensus 81 l~~~l~-------------------------------------------------------------------------- 86 (470)
|+..|.
T Consensus 459 LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (997)
T 2ipc_A 459 LSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLA 538 (997)
T ss_dssp HHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhH
Confidence 999887
Q ss_pred --c-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCc-------------------c----------
Q 012133 87 --S-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV-------------------D---------- 134 (470)
Q Consensus 87 --~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v-------------------~---------- 134 (470)
+ +++..+|.+.--..+-+.+-+.=+ .-.|-|||++|.||.||.-= .
T Consensus 539 ~~~~gI~H~VLNAK~he~EAeIIAqAG~--~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (997)
T 2ipc_A 539 VLRQGIPHQVLNAKHHAREAEIVAQAGR--SKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKM 616 (997)
T ss_dssp HHHHCCCCCEECSSSHHHHHHHHHTTTS--TTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHH
T ss_pred HHHcCCCeeeccccchHHHHHHHHhcCC--CCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccccccc
Confidence 1 355666666633333222222222 34689999999999999522 1
Q ss_pred ---------------------------------------------EEEEecCCCChhHHHHHhcccCCCCCCCeEEEeeC
Q 012133 135 ---------------------------------------------LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 169 (470)
Q Consensus 135 ---------------------------------------------~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~ 169 (470)
+||-...+.|...=.|-.||+||.|.+|.+.+|++
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LS 696 (997)
T 2ipc_A 617 VAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVS 696 (997)
T ss_dssp HHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEE
T ss_pred cccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEE
Confidence 78999999999999999999999999999988877
Q ss_pred hhh
Q 012133 170 SSQ 172 (470)
Q Consensus 170 ~~~ 172 (470)
-.+
T Consensus 697 LeD 699 (997)
T 2ipc_A 697 FDD 699 (997)
T ss_dssp SSS
T ss_pred CCh
Confidence 655
No 74
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=98.38 E-value=9.6e-08 Score=62.24 Aligned_cols=17 Identities=41% Similarity=1.085 Sum_probs=15.9
Q ss_pred ccccCCCCCccCCCCCC
Q 012133 454 ACFNCGKSGHRASECPN 470 (470)
Q Consensus 454 ~c~~c~~~gh~~~~c~~ 470 (470)
.||+|++.||||+|||+
T Consensus 12 ~C~~Cgk~GH~ardCP~ 28 (40)
T 1a6b_B 12 QCAYCKEKGHWAKDCPK 28 (40)
T ss_dssp SCSSSCCTTCCTTSCSS
T ss_pred eeeECCCCCcchhhCcC
Confidence 39999999999999995
No 75
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=98.25 E-value=9.3e-07 Score=57.82 Aligned_cols=16 Identities=50% Similarity=1.404 Sum_probs=15.6
Q ss_pred cccCCCCCccCCCCCC
Q 012133 455 CFNCGKSGHRASECPN 470 (470)
Q Consensus 455 c~~c~~~gh~~~~c~~ 470 (470)
||+|+++||+++|||+
T Consensus 24 C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 24 CWNCGSKEHRFAQCPK 39 (39)
T ss_dssp CTTTCCSSSCTTTSCC
T ss_pred cccCCCCCCccCcCcC
Confidence 9999999999999996
No 76
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=98.21 E-value=4.6e-07 Score=65.49 Aligned_cols=47 Identities=19% Similarity=0.296 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccCCCCCccCCCCCC
Q 012133 393 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSRSFGGACFNCGKSGHRASECPN 470 (470)
Q Consensus 393 ~~~~~~g~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~g~~c~~c~~~gh~~~~c~~ 470 (470)
+.|++|++.||.++.+........ . ......||+|+++||||+|||+
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~~~~~~~-------------------~------------~~~~~~C~~Cg~~GH~ar~C~~ 48 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHEHAHNNA-------------------E------------PKVPGLCPRCKRGKHWANECKS 48 (60)
T ss_dssp ----------------------------------------------------------CCCSCSSCSSCSSCSTTCCC
T ss_pred CccccCCCCCcCHhhCcCCCCCcc-------------------c------------cCCCcceeECCCCCCccCcCCC
Confidence 468899999998887754321100 0 0012239999999999999995
No 77
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=98.17 E-value=4.2e-07 Score=55.21 Aligned_cols=17 Identities=53% Similarity=1.300 Sum_probs=15.6
Q ss_pred ccccCCCCCccCCCCCC
Q 012133 454 ACFNCGKSGHRASECPN 470 (470)
Q Consensus 454 ~c~~c~~~gh~~~~c~~ 470 (470)
.|||||++||+|+|||.
T Consensus 8 ~C~nCgk~GH~ar~C~~ 24 (29)
T 1nc8_A 8 RCWNCGKEGHSARQCRA 24 (29)
T ss_dssp BCTTTSCBSSCGGGCCS
T ss_pred EEEECCccccCHhHCcc
Confidence 39999999999999984
No 78
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=98.13 E-value=5.3e-07 Score=63.40 Aligned_cols=17 Identities=41% Similarity=1.085 Sum_probs=15.8
Q ss_pred ccccCCCCCccCCCCCC
Q 012133 454 ACFNCGKSGHRASECPN 470 (470)
Q Consensus 454 ~c~~c~~~gh~~~~c~~ 470 (470)
.||+|||.||||+|||+
T Consensus 25 ~C~~Cge~GH~ardCp~ 41 (56)
T 1u6p_A 25 QCAYCKEKGHWAKDCPK 41 (56)
T ss_dssp BCSSSCCBSSCGGGCTT
T ss_pred cceeCCCCCcccccCcC
Confidence 39999999999999995
No 79
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=98.12 E-value=1.7e-06 Score=55.82 Aligned_cols=16 Identities=38% Similarity=1.153 Sum_probs=15.5
Q ss_pred cccCCCCCccCCCCCC
Q 012133 455 CFNCGKSGHRASECPN 470 (470)
Q Consensus 455 c~~c~~~gh~~~~c~~ 470 (470)
||+|+++||+|+|||+
T Consensus 22 C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 22 CFKCKQPGHFSKQCRS 37 (37)
T ss_dssp CSSCCCTTGGGGTTCC
T ss_pred EccCCCcCCccCcCcC
Confidence 9999999999999996
No 80
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.08 E-value=5e-06 Score=60.49 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=30.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccCCCCCccCCCCCC
Q 012133 393 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSRSFGGACFNCGKSGHRASECPN 470 (470)
Q Consensus 393 ~~~~~~g~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~g~~c~~c~~~gh~~~~c~~ 470 (470)
..|++|++.||..+.+..... ...||+|+++||+|+|||+
T Consensus 8 ~~C~~Cg~~GH~a~~C~~~~~--------------------------------------~~~C~~Cg~~GH~ar~Cp~ 47 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKLPPQ--------------------------------------PKKCHFCQSISHMVASCPL 47 (63)
T ss_dssp CCCSSSCCSSSCTTTCCSCCC--------------------------------------SSCCTTTCCSSSCTTTCTG
T ss_pred CcccccCCCCcChhhCCCCCC--------------------------------------CCccCCcCCcCCccCcCCC
Confidence 468999999998877743210 0129999999999999994
No 81
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=98.06 E-value=3e-06 Score=58.35 Aligned_cols=16 Identities=50% Similarity=1.475 Sum_probs=15.4
Q ss_pred cccCCCCCccCCCCCC
Q 012133 455 CFNCGKSGHRASECPN 470 (470)
Q Consensus 455 c~~c~~~gh~~~~c~~ 470 (470)
||+|+++||+++|||+
T Consensus 30 C~~Cg~~GH~~~~C~~ 45 (49)
T 2ec7_A 30 CWKCGKTGHVMAKCPE 45 (49)
T ss_dssp CSSSCCSSCCGGGCCS
T ss_pred eCcCCCcCCccCCCcC
Confidence 9999999999999995
No 82
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=98.01 E-value=4.2e-06 Score=63.57 Aligned_cols=61 Identities=16% Similarity=0.275 Sum_probs=51.6
Q ss_pred EEEEEeeCCccccCCcchhhHHhHhhhhcCcCcCccccEEEeecCccceeEeecCHHHHHHHHhhcCC
Q 012133 264 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 331 (470)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~Ig~I~i~~~~~~~ga~fdv~~~~a~~i~~~~~~ 331 (470)
+|++++.++ ++++.|.+|+++|++...+...+||+|++.+++ +||++|.+.++++++.+..
T Consensus 1 ~~~~i~~Gr---k~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~----s~v~v~~~~~~~~~~~l~~ 61 (76)
T 2g0c_A 1 MKLYFNGGK---KKKIRAVDFVGTIAKIDGVSADDIGIITIMDNA----SYVEILNGKGPHVLKVMKN 61 (76)
T ss_dssp CEEEESCCC---C----CHHHHHHHHTSTTCCGGGEEEEEECSSC----EEEEECTTCHHHHHHHHTT
T ss_pred CEEEEeCCC---ccCCCHHHHHHHHHHccCCChhhccEEEEeCCc----EEEEECHHHHHHHHHHhcc
Confidence 367888888 889999999999999999999999999999987 7999999999999987654
No 83
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=98.01 E-value=3e-06 Score=61.28 Aligned_cols=44 Identities=20% Similarity=0.295 Sum_probs=31.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccCCCCCccCCCCCC
Q 012133 393 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSRSFGGACFNCGKSGHRASECPN 470 (470)
Q Consensus 393 ~~~~~~g~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~g~~c~~c~~~gh~~~~c~~ 470 (470)
..|+.|++.||.++.+......+ .....||+|+++||+|+|||+
T Consensus 5 ~~C~~Cg~~GH~a~~C~~~~~~~----------------------------------~~~~~C~~Cg~~GH~ar~C~~ 48 (61)
T 2ihx_A 5 GLCYTCGSPGHYQAQCPKKRKSG----------------------------------NSRERCQLCNGMGHNAKQCRK 48 (61)
T ss_dssp TBCSSSCCBTCCGGGCTTTTSSS----------------------------------CCCSBCTTTCCBSSCGGGCCC
T ss_pred CcccccCCCCeehhhCcCCcCCC----------------------------------CCCCeeCCCCCCCCCcCCCcC
Confidence 45889999999888775431100 001239999999999999995
No 84
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.99 E-value=9.8e-06 Score=85.14 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=49.7
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHcccccCCeeEEE--ecccccccCCCCC----ccEEE
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV--ATDVAARGLDIPN----VDLII 137 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLV--aTdv~~~Gidip~----v~~VI 137 (470)
.++.+|||++|....+++++.|.. +. ..+++.. .+|.++++.|+.+. .||+ +|+.+.+|||+|+ +.+||
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~-~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vi 457 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG-IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLV 457 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT-SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc-Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEE
Confidence 457999999999999999988864 33 4456654 56888999998864 5666 8999999999997 88999
Q ss_pred EecCCC
Q 012133 138 HYELPN 143 (470)
Q Consensus 138 ~~~~p~ 143 (470)
++++|.
T Consensus 458 i~~lPf 463 (540)
T 2vl7_A 458 LAGLPY 463 (540)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999985
No 85
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.92 E-value=3.4e-06 Score=59.05 Aligned_cols=16 Identities=56% Similarity=1.481 Sum_probs=15.4
Q ss_pred ccccCCCCCccCCCCC
Q 012133 454 ACFNCGKSGHRASECP 469 (470)
Q Consensus 454 ~c~~c~~~gh~~~~c~ 469 (470)
.||+||++|||++|||
T Consensus 9 ~C~kCGk~GH~~k~Cp 24 (55)
T 2ysa_A 9 TCFRCGKPGHYIKNCP 24 (55)
T ss_dssp CCTTTCCTTSCGGGCS
T ss_pred ccccCCCcCcccccCC
Confidence 4999999999999999
No 86
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=97.92 E-value=1.1e-05 Score=60.60 Aligned_cols=16 Identities=31% Similarity=0.818 Sum_probs=15.4
Q ss_pred cccCCCCCccCCCCCC
Q 012133 455 CFNCGKSGHRASECPN 470 (470)
Q Consensus 455 c~~c~~~gh~~~~c~~ 470 (470)
||+|+++||+|+|||+
T Consensus 49 C~~Cg~~GH~ar~Cp~ 64 (74)
T 2li8_A 49 CHFCQSISHMVASCPL 64 (74)
T ss_dssp CTTTCCTTSCGGGCTT
T ss_pred cCCcCCcCCccCcCcC
Confidence 9999999999999995
No 87
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=97.89 E-value=4.7e-06 Score=58.95 Aligned_cols=16 Identities=44% Similarity=1.375 Sum_probs=15.4
Q ss_pred cccCCCCCccCCCCCC
Q 012133 455 CFNCGKSGHRASECPN 470 (470)
Q Consensus 455 c~~c~~~gh~~~~c~~ 470 (470)
||+|+++||+|+|||+
T Consensus 36 C~~Cg~~GH~~~~C~~ 51 (55)
T 1a1t_A 36 CWKCGKEGHQMKDCTE 51 (55)
T ss_dssp CTTTCCBSSCGGGCSS
T ss_pred eCCCCCcCCccCCCcC
Confidence 9999999999999995
No 88
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=97.88 E-value=9.5e-06 Score=69.77 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=31.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccCCCCCccCCCCCC
Q 012133 393 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSRSFGGACFNCGKSGHRASECPN 470 (470)
Q Consensus 393 ~~~~~~g~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~g~~c~~c~~~gh~~~~c~~ 470 (470)
..|++||+.||.++.|..... ...||+|+++||++||||+
T Consensus 98 ~~C~~Cg~~GH~a~~C~~~~~--------------------------------------~~~C~~Cg~~GH~~r~Cp~ 137 (148)
T 3ts2_A 98 DRCYNCGGLDHHAKECKLPPQ--------------------------------------PKKCHFCQSINHMVASCPL 137 (148)
T ss_dssp CCCTTTCCSSCCGGGCCSCCC--------------------------------------CCCCTTTCCSSCCGGGCTT
T ss_pred CcccEeCCccchhhhCCCCCC--------------------------------------CCcccccCCcCCEeccCcC
Confidence 569999999998887754210 0129999999999999995
No 89
>3i31_A Heat resistant RNA dependent ATPase; RNA helicase, RNA recognition motif, ATP-binding, helicase, nucleotide-binding; 1.80A {Thermus thermophilus}
Probab=97.77 E-value=4.6e-05 Score=56.91 Aligned_cols=77 Identities=25% Similarity=0.350 Sum_probs=60.9
Q ss_pred CCcccccCCCCeEEEEEeeCCccccCCcchhhHHhHhhhhcCcCcCccccEEEeecCccceeEeecCHHHHHHHHhhcCC
Q 012133 252 SSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 331 (470)
Q Consensus 252 ~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~Ig~I~i~~~~~~~ga~fdv~~~~a~~i~~~~~~ 331 (470)
.++||++++++|+|+.+...+ ++...++.+|.+... +||+|+.+.. |+|.|++.+..+ ..
T Consensus 2 ~~~SLLTGEEGw~Tlkl~G~r------LS~~R~VAlLk~aG~----~iGkI~~~~~----gayaDlr~e~l~------~~ 61 (88)
T 3i31_A 2 AERSLLTGEEGWRTYKATGPR------LSLPRLVALLKGQGL----EVGKVAEAEG----GFYVDLRPEARP------EV 61 (88)
T ss_dssp CCBCTTTCCBSCEEEEEECTT------CCHHHHHHHHHHTTC----CEEEEEEETT----EEEEEECTTCCC------CC
T ss_pred CcccccccCcceEEEEEeccc------ccHHHHHHHHHHccc----ccccEEeccc----eeEEecChHHcc------cc
Confidence 468999999999999996544 788888888876543 8999998765 699999888766 34
Q ss_pred CCCeEEEeccCCCccCC
Q 012133 332 PGNTISKITKLPALQDD 348 (470)
Q Consensus 332 ~g~~i~~~~~lP~~~~~ 348 (470)
.++.++++..+|.+.+.
T Consensus 62 ~~~~~e~A~~v~~~~E~ 78 (88)
T 3i31_A 62 AGLRLEPARRVEGLLEI 78 (88)
T ss_dssp TTCEEEECCSCCCCC--
T ss_pred ccceehhhhhccccccC
Confidence 78888888888888664
No 90
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.74 E-value=0.00019 Score=76.56 Aligned_cols=104 Identities=20% Similarity=0.260 Sum_probs=68.1
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc--cccccCCCCC--ccEEEEe
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPN--VDLIIHY 139 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd--v~~~Gidip~--v~~VI~~ 139 (470)
.++.+|||+++....+++++.|. .+... ..-+++..++.+++++|+ +.-.||++|. .+.+|||+|+ ...||..
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~-~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~ 523 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVS-FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILA 523 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCC-SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEES
T ss_pred CCCCEEEEeCCHHHHHHHHHHHH-hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEE
Confidence 35789999999999999988876 33322 444455668999999999 7888999975 8999999985 5578888
Q ss_pred cCCCCh-----------------------------hHHHHHhcccCCCCCCCeEEEeeCh
Q 012133 140 ELPNDP-----------------------------ETFVHRSGRTGRAGKEGTAILMFTS 170 (470)
Q Consensus 140 ~~p~~~-----------------------------~~y~qr~GR~gR~g~~g~~i~l~~~ 170 (470)
.+|... ..+.|-+||.=|.-..-=++++++.
T Consensus 524 ~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 524 GLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred cCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 877421 1126889999997533334444444
No 91
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.63 E-value=0.00064 Score=65.74 Aligned_cols=120 Identities=13% Similarity=0.130 Sum_probs=86.3
Q ss_pred cccHHHHHHHHHHHHc-CCCeEEEEeCchHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccccc
Q 012133 48 ATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 125 (470)
Q Consensus 48 ~~~k~~~l~~ll~~~~-~~~~~lVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~ 125 (470)
.+.|+.+|.++|.... .+.++|||++..+..+-|..++. +++....+.|.....+++ . .+....|.+.|....
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-~----~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-A----NDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-c----ccCCceEEEEECCCC
Confidence 5689999999997663 45699999999999999999998 578888899885443322 1 234556666566666
Q ss_pred ccCC-----CCCccEEEEecCCCChhHH-HHHhcccCCCC----CCCeEEEeeChhh
Q 012133 126 RGLD-----IPNVDLIIHYELPNDPETF-VHRSGRTGRAG----KEGTAILMFTSSQ 172 (470)
Q Consensus 126 ~Gid-----ip~v~~VI~~~~p~~~~~y-~qr~GR~gR~g----~~g~~i~l~~~~~ 172 (470)
-|++ +...+.||.||.-|++..= +|.+-|+.|.+ ++-.+|.|++...
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 6675 6788999999999999885 89888888862 4567777777644
No 92
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=97.61 E-value=1.9e-05 Score=51.53 Aligned_cols=16 Identities=63% Similarity=1.412 Sum_probs=15.3
Q ss_pred cccCCCCCccCCCCCC
Q 012133 455 CFNCGKSGHRASECPN 470 (470)
Q Consensus 455 c~~c~~~gh~~~~c~~ 470 (470)
||+|+++||+|+|||+
T Consensus 3 C~~Cg~~GH~a~~C~~ 18 (39)
T 2a51_A 3 CFNCGKPGHTARMCRQ 18 (39)
T ss_dssp CTTTCCBSSCTTTCCS
T ss_pred eeccCCCCcccccCCC
Confidence 9999999999999984
No 93
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.00028 Score=58.73 Aligned_cols=18 Identities=39% Similarity=1.030 Sum_probs=16.6
Q ss_pred CccccCCCCCccCCCCCC
Q 012133 453 GACFNCGKSGHRASECPN 470 (470)
Q Consensus 453 ~~c~~c~~~gh~~~~c~~ 470 (470)
..||+|++.||||+|||+
T Consensus 106 ~~Cy~Cg~~GH~a~dCp~ 123 (124)
T 2lli_A 106 IYCYNCGGKGHFGDDCKE 123 (124)
T ss_dssp CCTTTTSSSCTTTTTSCC
T ss_pred CCcCCCCCCCcCcccCcC
Confidence 469999999999999996
No 94
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=97.56 E-value=2.6e-05 Score=50.18 Aligned_cols=16 Identities=56% Similarity=1.410 Sum_probs=15.3
Q ss_pred cccCCCCCccCCCCCC
Q 012133 455 CFNCGKSGHRASECPN 470 (470)
Q Consensus 455 c~~c~~~gh~~~~c~~ 470 (470)
||+|+++||++++||+
T Consensus 3 C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 3 CYNCGKPGHLSSQCRA 18 (37)
T ss_dssp BSSSCCSSCCTTTSSC
T ss_pred ccccCCCCcchhhCcC
Confidence 9999999999999985
No 95
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=97.43 E-value=4.2e-05 Score=52.53 Aligned_cols=17 Identities=53% Similarity=1.300 Sum_probs=15.7
Q ss_pred ccccCCCCCccCCCCCC
Q 012133 454 ACFNCGKSGHRASECPN 470 (470)
Q Consensus 454 ~c~~c~~~gh~~~~c~~ 470 (470)
.||+|+++||+++|||+
T Consensus 8 ~C~~Cg~~GH~a~~C~~ 24 (49)
T 2ec7_A 8 RCWNCGKEGHSARQCRA 24 (49)
T ss_dssp BCTTTCCBTCCTTTCCC
T ss_pred eeeecCCCCcChhhCcC
Confidence 39999999999999984
No 96
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=97.43 E-value=3.2e-05 Score=59.31 Aligned_cols=17 Identities=41% Similarity=1.179 Sum_probs=15.9
Q ss_pred ccccCCCCCccCCCCCC
Q 012133 454 ACFNCGKSGHRASECPN 470 (470)
Q Consensus 454 ~c~~c~~~gh~~~~c~~ 470 (470)
.||+||+.||+++|||+
T Consensus 48 ~CYnCG~~GH~~rdC~~ 64 (83)
T 3nyb_B 48 YCYNCGGKGHFGDDCKE 64 (83)
T ss_dssp BCSSSSCBSSCGGGCSS
T ss_pred eecccCCCCcCcccCCc
Confidence 49999999999999995
No 97
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=97.32 E-value=5.4e-05 Score=54.63 Aligned_cols=17 Identities=41% Similarity=1.327 Sum_probs=15.8
Q ss_pred ccccCCCCCccCCCCCC
Q 012133 454 ACFNCGKSGHRASECPN 470 (470)
Q Consensus 454 ~c~~c~~~gh~~~~c~~ 470 (470)
.||+|+++||+|+|||+
T Consensus 6 ~C~~Cg~~GH~a~~C~~ 22 (61)
T 2ihx_A 6 LCYTCGSPGHYQAQCPK 22 (61)
T ss_dssp BCSSSCCBTCCGGGCTT
T ss_pred cccccCCCCeehhhCcC
Confidence 39999999999999995
No 98
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.22 E-value=0.00018 Score=52.24 Aligned_cols=17 Identities=47% Similarity=1.085 Sum_probs=15.6
Q ss_pred ccccCCCCCccCCCCCC
Q 012133 454 ACFNCGKSGHRASECPN 470 (470)
Q Consensus 454 ~c~~c~~~gh~~~~c~~ 470 (470)
.||+|+++||+++|||+
T Consensus 9 ~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 9 RCYNCGGLDHHAKECKL 25 (63)
T ss_dssp CCSSSCCSSSCTTTCCS
T ss_pred cccccCCCCcChhhCCC
Confidence 39999999999999983
No 99
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=97.17 E-value=9.8e-05 Score=52.06 Aligned_cols=17 Identities=59% Similarity=1.318 Sum_probs=15.7
Q ss_pred ccccCCCCCccCCCCCC
Q 012133 454 ACFNCGKSGHRASECPN 470 (470)
Q Consensus 454 ~c~~c~~~gh~~~~c~~ 470 (470)
.||+|+++||+|+|||+
T Consensus 14 ~C~~Cg~~GH~a~~C~~ 30 (55)
T 1a1t_A 14 KCFNCGKEGHIAKNCRA 30 (55)
T ss_dssp BCTTTCCBSSCGGGCSS
T ss_pred ceeeeCCCCcChhhcCC
Confidence 39999999999999984
No 100
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=97.13 E-value=0.00033 Score=52.41 Aligned_cols=17 Identities=47% Similarity=1.085 Sum_probs=15.6
Q ss_pred ccccCCCCCccCCCCCC
Q 012133 454 ACFNCGKSGHRASECPN 470 (470)
Q Consensus 454 ~c~~c~~~gh~~~~c~~ 470 (470)
.||+|+++||+++|||.
T Consensus 26 ~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 26 RCYNCGGLDHHAKECKL 42 (74)
T ss_dssp CCTTTCCSSSCTTTCSS
T ss_pred cccccCCcCcCcccCCC
Confidence 39999999999999983
No 101
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=96.63 E-value=0.014 Score=61.13 Aligned_cols=75 Identities=11% Similarity=0.125 Sum_probs=53.2
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEec--ccccccCCCC-----CccEE
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVAT--DVAARGLDIP-----NVDLI 136 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaT--dv~~~Gidip-----~v~~V 136 (470)
.++.+|||+++....+++++.+ ...+..-.-+++.. ++++.|+...-.||++| ....+|||+| .+..|
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~~--~~~v~~q~~~~~~~---~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~v 466 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSRI--SLPKYVESEDSSVE---DLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDV 466 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTTC--CSSEEECCSSCCHH---HHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEE
T ss_pred CCCCEEEEecCHHHHHHHHHhc--CCcEEEcCCCCCHH---HHHHHHHhcCCeEEEEEecceecccccccccCCcceeEE
Confidence 4679999999999999888732 23333333355544 45666643334799998 6999999999 46788
Q ss_pred EEecCCC
Q 012133 137 IHYELPN 143 (470)
Q Consensus 137 I~~~~p~ 143 (470)
|...+|.
T Consensus 467 iI~~lPf 473 (551)
T 3crv_A 467 VIVGIPY 473 (551)
T ss_dssp EEESCCC
T ss_pred EEEcCCC
Confidence 8888775
No 102
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=96.53 E-value=0.00062 Score=58.37 Aligned_cols=16 Identities=50% Similarity=1.165 Sum_probs=15.3
Q ss_pred cccCCCCCccCCCCCC
Q 012133 455 CFNCGKSGHRASECPN 470 (470)
Q Consensus 455 c~~c~~~gh~~~~c~~ 470 (470)
||||++.||+|++||+
T Consensus 100 C~~Cg~~GH~a~~C~~ 115 (148)
T 3ts2_A 100 CYNCGGLDHHAKECKL 115 (148)
T ss_dssp CTTTCCSSCCGGGCCS
T ss_pred ccEeCCccchhhhCCC
Confidence 9999999999999984
No 103
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.0048 Score=51.16 Aligned_cols=18 Identities=28% Similarity=0.709 Sum_probs=16.2
Q ss_pred CccccCCCCCccCCCCCC
Q 012133 453 GACFNCGKSGHRASECPN 470 (470)
Q Consensus 453 ~~c~~c~~~gh~~~~c~~ 470 (470)
..||+|++.||+++|||+
T Consensus 65 ~~C~~Cg~~GH~~~~Cp~ 82 (124)
T 2lli_A 65 VQCTLCKSKKHSKERCPS 82 (124)
T ss_dssp CSSSSSCSSCCCTTTCCC
T ss_pred ccCCCCCcCCcchhhCCC
Confidence 359999999999999995
No 104
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.84 E-value=0.02 Score=62.43 Aligned_cols=92 Identities=21% Similarity=0.289 Sum_probs=72.1
Q ss_pred ccHHHH-HHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 49 TSKRTI-LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 49 ~~k~~~-l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
.-|..+ +..++.....+.++||.+||+..+.+.++.+.+ ++.+..+||+++..+|..+++.+.++..+|+|+|.
T Consensus 400 SGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~ 479 (780)
T 1gm5_A 400 SGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTH 479 (780)
T ss_dssp SSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECT
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 455433 333344444567999999999999999888763 47899999999999999999999999999999996
Q ss_pred -cccccCCCCCccEEEEec
Q 012133 123 -VAARGLDIPNVDLIIHYE 140 (470)
Q Consensus 123 -v~~~Gidip~v~~VI~~~ 140 (470)
.+...+++.++.+||.-.
T Consensus 480 ~ll~~~~~~~~l~lVVIDE 498 (780)
T 1gm5_A 480 ALIQEDVHFKNLGLVIIDE 498 (780)
T ss_dssp THHHHCCCCSCCCEEEEES
T ss_pred HHHhhhhhccCCceEEecc
Confidence 444567888999888543
No 105
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.70 E-value=0.023 Score=56.83 Aligned_cols=90 Identities=14% Similarity=0.200 Sum_probs=69.1
Q ss_pred ccHHHH-HHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc
Q 012133 49 TSKRTI-LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 123 (470)
Q Consensus 49 ~~k~~~-l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv 123 (470)
.-|..+ +..++.......++||.+||++.+.++++.+.+ .+.+..+||+.+..++...++.+..+..+|+|+|+-
T Consensus 47 sGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~ 126 (414)
T 3oiy_A 47 VGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQ 126 (414)
T ss_dssp SSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHH
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHH
Confidence 455442 233344445678999999999999999999886 578999999999999888888888888999999973
Q ss_pred cc----ccCCCCCccEEEE
Q 012133 124 AA----RGLDIPNVDLIIH 138 (470)
Q Consensus 124 ~~----~Gidip~v~~VI~ 138 (470)
.- .-+++.++++||.
T Consensus 127 ~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 127 FVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp HHHHCHHHHTTCCCSEEEE
T ss_pred HHHHHHHHhccccccEEEE
Confidence 21 1256678888885
No 106
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=94.45 E-value=0.061 Score=60.93 Aligned_cols=92 Identities=15% Similarity=0.188 Sum_probs=70.8
Q ss_pred CcccHHHHH-HHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEec
Q 012133 47 TATSKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 121 (470)
Q Consensus 47 ~~~~k~~~l-~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaT 121 (470)
...-|..+. .-++.......++||.+||++.+.++++.+.. .+.+..+||+++..+|...++.+.++..+|||+|
T Consensus 102 TGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~T 181 (1104)
T 4ddu_A 102 TGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFS 181 (1104)
T ss_dssp TTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEE
T ss_pred CCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEC
Confidence 334565433 22334445678999999999999999999986 3589999999999888888999998889999999
Q ss_pred cc-----ccccCCCCCccEEEEe
Q 012133 122 DV-----AARGLDIPNVDLIIHY 139 (470)
Q Consensus 122 dv-----~~~Gidip~v~~VI~~ 139 (470)
+- +.. +++.++.+||.-
T Consensus 182 p~rL~~~l~~-l~~~~l~~lViD 203 (1104)
T 4ddu_A 182 TQFVSKNREK-LSQKRFDFVFVD 203 (1104)
T ss_dssp HHHHHHSHHH-HHTSCCSEEEES
T ss_pred HHHHHHHHHh-hcccCcCEEEEe
Confidence 62 222 566788888853
No 107
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.06 E-value=0.95 Score=41.30 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=54.2
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-----ccc-ccCCCCCc
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAA-RGLDIPNV 133 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-----v~~-~Gidip~v 133 (470)
..++||.+||++.+.++++.+.+ .+.+..++|+.+...+...+.. ..+|+|+|+ .+. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45799999999999999887764 5789999999988877666554 478999996 222 34577888
Q ss_pred cEEEE
Q 012133 134 DLIIH 138 (470)
Q Consensus 134 ~~VI~ 138 (470)
.+||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88774
No 108
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=93.69 E-value=0.19 Score=57.26 Aligned_cols=90 Identities=14% Similarity=0.173 Sum_probs=70.9
Q ss_pred ccHHHHH-HHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 49 TSKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 49 ~~k~~~l-~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
.-|..+. ..++.....+.++||.+||+..+.+.++.+.+ .+.+..+++..+..++..+++.+.++..+|+|+|.
T Consensus 635 sGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~ 714 (1151)
T 2eyq_A 635 FGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 714 (1151)
T ss_dssp TTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECT
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 3454332 23333444667999999999999999988874 35789999999999999999999999999999994
Q ss_pred -cccccCCCCCccEEEE
Q 012133 123 -VAARGLDIPNVDLIIH 138 (470)
Q Consensus 123 -v~~~Gidip~v~~VI~ 138 (470)
.+...+.+.++.+||.
T Consensus 715 ~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 715 KLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp HHHHSCCCCSSEEEEEE
T ss_pred HHHhCCccccccceEEE
Confidence 5556688889988884
No 109
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=93.05 E-value=0.7 Score=42.45 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=50.9
Q ss_pred CeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc------ccccCCCCCcc
Q 012133 66 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNVD 134 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv------~~~Gidip~v~ 134 (470)
.++||.++|++.+.++++.+.+ .+.+..++|+.+..++...+. ...+|+|+|.- ....+++..+.
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQ----MGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHS----SCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhC----CCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 5899999999999999888763 367888999887665554443 25789999962 12235677888
Q ss_pred EEEE
Q 012133 135 LIIH 138 (470)
Q Consensus 135 ~VI~ 138 (470)
+||.
T Consensus 177 ~lVi 180 (253)
T 1wrb_A 177 YIVL 180 (253)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
No 110
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=92.34 E-value=0.47 Score=42.85 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=46.7
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc------ccccCCCCCc
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNV 133 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv------~~~Gidip~v 133 (470)
...++||.++|++.+.++++.+.+ .+.+..++++.+...+...+.. ..+|+|+|+- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISK----GVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHS----CCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcCcccc
Confidence 456899999999999999988874 4678889998776655444432 4789999962 2234556666
Q ss_pred cEEEE
Q 012133 134 DLIIH 138 (470)
Q Consensus 134 ~~VI~ 138 (470)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 66663
No 111
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=91.46 E-value=0.91 Score=41.77 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=51.5
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc-----cc--ccCCCCC
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA--RGLDIPN 132 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv-----~~--~Gidip~ 132 (470)
..++||.++|++.+.++++.+.+ .+.+..++|+.+...+...+. ...+|+|+|+- +. ..+++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA----KKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH----TCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 45799999999999999887763 477899999988776655443 25789999962 11 3456677
Q ss_pred ccEEEE
Q 012133 133 VDLIIH 138 (470)
Q Consensus 133 v~~VI~ 138 (470)
+++||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 777664
No 112
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=91.39 E-value=1.9 Score=38.45 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=50.6
Q ss_pred CeEEEEeCchHHHHHHHHHHhc------CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccc------cccCCCCCc
Q 012133 66 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNV 133 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~------~~Gidip~v 133 (470)
.++||.++|++.+.++++.+.+ .+.+..++|+.+..++...+. .+..+|+|+|.-. ...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK---KNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH---HSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHh---cCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 4899999999999999887763 467899999998776655443 3456899999621 223456666
Q ss_pred cEEEE
Q 012133 134 DLIIH 138 (470)
Q Consensus 134 ~~VI~ 138 (470)
++||.
T Consensus 160 ~~lVi 164 (220)
T 1t6n_A 160 KHFIL 164 (220)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 66663
No 113
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=90.64 E-value=2.2 Score=37.97 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=52.8
Q ss_pred cCcccHHHH-HHHHHHHH---cCCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCee
Q 012133 46 TTATSKRTI-LSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFT 116 (470)
Q Consensus 46 ~~~~~k~~~-l~~ll~~~---~~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~ 116 (470)
....-|..+ +..++..+ ....++||.++|++.+.++++.+.. .+.+..++|+.+..++...+. ..+
T Consensus 59 pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~ 133 (224)
T 1qde_A 59 QSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQ 133 (224)
T ss_dssp CTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-----TCS
T ss_pred CCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC-----CCC
Confidence 334566644 33444433 2345899999999999999887763 467888999877665443332 278
Q ss_pred EEEeccc------ccccCCCCCccEEEE
Q 012133 117 VLVATDV------AARGLDIPNVDLIIH 138 (470)
Q Consensus 117 iLVaTdv------~~~Gidip~v~~VI~ 138 (470)
|+|+|.- ....+++..+++||.
T Consensus 134 iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 134 IVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp EEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred EEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 9999962 233466677777774
No 114
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=90.51 E-value=0.59 Score=42.33 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=50.7
Q ss_pred CcccHHHH-HHHHHHHH---cCCCeEEEEeCchHHHHHHHHHHhc------CCcEEEEeCCCCHHHHHHHHcccccCCee
Q 012133 47 TATSKRTI-LSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFT 116 (470)
Q Consensus 47 ~~~~k~~~-l~~ll~~~---~~~~~~lVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~ 116 (470)
...-|..+ +.-++... ....++||.++|++.+.++++.+.+ .+.+..++|+.+..++...++ ..+
T Consensus 70 TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~ 144 (230)
T 2oxc_A 70 SGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-----KCH 144 (230)
T ss_dssp TTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-----SCS
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-----CCC
Confidence 33566544 33344433 2346899999999999999888863 467889999998877665553 478
Q ss_pred EEEecc
Q 012133 117 VLVATD 122 (470)
Q Consensus 117 iLVaTd 122 (470)
|+|+|.
T Consensus 145 Iiv~Tp 150 (230)
T 2oxc_A 145 IAVGSP 150 (230)
T ss_dssp EEEECH
T ss_pred EEEECH
Confidence 999996
No 115
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=90.43 E-value=2 Score=37.71 Aligned_cols=88 Identities=23% Similarity=0.214 Sum_probs=58.5
Q ss_pred CcccHHHH-HHHHHHHHc------CCCeEEEEeCchHHHHHHHHHHhc---CCcEEEEeCCCCHHHHHHHHcccccCCee
Q 012133 47 TATSKRTI-LSDLITVYA------KGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFT 116 (470)
Q Consensus 47 ~~~~k~~~-l~~ll~~~~------~~~~~lVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~R~~~~~~f~~g~~~ 116 (470)
...-|..+ +..++.... ...++||.+||++.+.++++.+.+ .+.+..++++.+...+...+.. ..+
T Consensus 47 TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 122 (207)
T 2gxq_A 47 TGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLR----GAD 122 (207)
T ss_dssp TTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHH----CCS
T ss_pred CCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhC----CCC
Confidence 34466544 333444431 346899999999999999998875 3678899998876555444432 478
Q ss_pred EEEeccc-----c-cccCCCCCccEEEE
Q 012133 117 VLVATDV-----A-ARGLDIPNVDLIIH 138 (470)
Q Consensus 117 iLVaTdv-----~-~~Gidip~v~~VI~ 138 (470)
|+|+|+- + ...+++.++++||.
T Consensus 123 i~v~T~~~l~~~~~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 123 AVVATPGRALDYLRQGVLDLSRVEVAVL 150 (207)
T ss_dssp EEEECHHHHHHHHHHTSSCCTTCSEEEE
T ss_pred EEEECHHHHHHHHHcCCcchhhceEEEE
Confidence 9999961 1 22355667777664
No 116
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=90.41 E-value=0.63 Score=48.96 Aligned_cols=75 Identities=12% Similarity=0.152 Sum_probs=60.4
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHccc--ccCCeeEEEecccc-----------cccCC
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGF--RQGKFTVLVATDVA-----------ARGLD 129 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f--~~g~~~iLVaTdv~-----------~~Gid 129 (470)
..+.+||.+|+++.+++.++.|.. ++.+..++++++..++..++..+ ..+..+|||+|+-. ..-++
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~ 162 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYE 162 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhh
Confidence 467999999999999999998885 78999999999999998888887 46789999999731 12234
Q ss_pred CCCccEEEE
Q 012133 130 IPNVDLIIH 138 (470)
Q Consensus 130 ip~v~~VI~ 138 (470)
+..+.+||.
T Consensus 163 ~~~i~~iVi 171 (591)
T 2v1x_A 163 ARRFTRIAV 171 (591)
T ss_dssp TTCEEEEEE
T ss_pred ccCCcEEEE
Confidence 556777663
No 117
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=90.27 E-value=0.6 Score=48.26 Aligned_cols=75 Identities=19% Similarity=0.177 Sum_probs=60.9
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccccc------ccCCCCCccEE
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA------RGLDIPNVDLI 136 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~------~Gidip~v~~V 136 (470)
..+.+||.+|++..+.+..+.|.. ++.+..+|+..+..++..++..+..+..+|||+|+-.- .-++..++.+|
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~v 143 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEE
Confidence 458999999999999999998885 78899999999999999999999999999999996311 22344566666
Q ss_pred EE
Q 012133 137 IH 138 (470)
Q Consensus 137 I~ 138 (470)
|.
T Consensus 144 Vi 145 (523)
T 1oyw_A 144 AV 145 (523)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 118
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=89.92 E-value=1.1 Score=39.58 Aligned_cols=70 Identities=19% Similarity=0.130 Sum_probs=49.4
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc------CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc-----cc-ccCCCCC
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA-RGLDIPN 132 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv-----~~-~Gidip~ 132 (470)
..++||.++|++.+.++++.+.+ .+.+..++|+.+..+....+. ...+|+|+|+- +. .-+++..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD----DTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcC----CCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 35899999999999999888763 467889999988766544432 35789999962 12 2245566
Q ss_pred ccEEEE
Q 012133 133 VDLIIH 138 (470)
Q Consensus 133 v~~VI~ 138 (470)
+++||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 666663
No 119
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=89.58 E-value=0.87 Score=45.70 Aligned_cols=70 Identities=11% Similarity=0.171 Sum_probs=53.7
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-----cccc-cCCCCCc
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPNV 133 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-----v~~~-Gidip~v 133 (470)
..++||.+||++.+.++++.+.+ .+.+..+||+.+..++...+.. ..+|+|+|+ .+.+ -+++..+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~----~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITR----GCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTT----CCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhc----CCCEEEEChHHHHHHHHhCCcccccC
Confidence 35899999999999999988774 3678889999988776655543 579999996 2222 3567888
Q ss_pred cEEEE
Q 012133 134 DLIIH 138 (470)
Q Consensus 134 ~~VI~ 138 (470)
++||.
T Consensus 205 ~~lVl 209 (434)
T 2db3_A 205 RFVVL 209 (434)
T ss_dssp CEEEE
T ss_pred CeEEE
Confidence 88874
No 120
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=89.58 E-value=0.61 Score=52.61 Aligned_cols=76 Identities=17% Similarity=0.288 Sum_probs=58.6
Q ss_pred HHcCCCeEEEEeCchHHHHHHHHHHhc-----CC----cEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc-ccccCC-
Q 012133 61 VYAKGGKTIVFTQTKRDADEVSLALTS-----II----ASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARGLD- 129 (470)
Q Consensus 61 ~~~~~~~~lVF~~t~~~~~~l~~~l~~-----~~----~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv-~~~Gid- 129 (470)
......++||.+||++.+.++++.+.. .+ .+..+||+++..++.+.++.+++ .+|||+|+- +..-+.
T Consensus 95 ~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~ 172 (1054)
T 1gku_B 95 LALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRE 172 (1054)
T ss_dssp HHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTT
T ss_pred HhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHH
Confidence 334567999999999999999988873 34 78999999999998888888887 899999961 111111
Q ss_pred CCCccEEEE
Q 012133 130 IPNVDLIIH 138 (470)
Q Consensus 130 ip~v~~VI~ 138 (470)
+..+++||.
T Consensus 173 L~~l~~lVi 181 (1054)
T 1gku_B 173 LGHFDFIFV 181 (1054)
T ss_dssp SCCCSEEEE
T ss_pred hccCCEEEE
Confidence 557788774
No 121
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=89.28 E-value=1.4 Score=40.80 Aligned_cols=71 Identities=15% Similarity=0.237 Sum_probs=51.6
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-----ccc--ccCCCC
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAA--RGLDIP 131 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-----v~~--~Gidip 131 (470)
...++||.+||++.+.++++.+.+ ...+..++|+.....+...+.. ..+|+|+|+ .+. ..+++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGN----GINIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcC----CCCEEEEcHHHHHHHHHccCCcccc
Confidence 356899999999999999988874 3567888998877665544432 378999995 222 235677
Q ss_pred CccEEEE
Q 012133 132 NVDLIIH 138 (470)
Q Consensus 132 ~v~~VI~ 138 (470)
++.+||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7777764
No 122
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=87.94 E-value=2.3 Score=41.40 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=53.7
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc------CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccc------cccCCCCC
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 132 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~------~~Gidip~ 132 (470)
..++||.|||+..++++++.+.+ .+.+..++|+.+..++...+. .+..+|+|+|.-. ...+++.+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK---KNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHH---HSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHh---cCCCCEEEECHHHHHHHHHcCCccccc
Confidence 45899999999999998887763 467999999998876665543 3457899999621 23456788
Q ss_pred ccEEEE
Q 012133 133 VDLIIH 138 (470)
Q Consensus 133 v~~VI~ 138 (470)
+++||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 888884
No 123
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=87.87 E-value=2.1 Score=38.65 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=40.7
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
...++||.+||++.+.++++.+.+ .+.+..+||+.+.......+ ...+|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 356899999999999999988874 26788999988766554444 2578999996
No 124
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=87.61 E-value=1.7 Score=39.46 Aligned_cols=87 Identities=14% Similarity=0.193 Sum_probs=49.6
Q ss_pred ccHHHH-HHHHHHHHc---CCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEE
Q 012133 49 TSKRTI-LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 119 (470)
Q Consensus 49 ~~k~~~-l~~ll~~~~---~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLV 119 (470)
.-|..+ +..++.... ...++||.++|++.+.++++.+.+ .+.+..++++.+.... ++.+..+..+|+|
T Consensus 78 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv 154 (237)
T 3bor_A 78 TGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAEAPHIVV 154 (237)
T ss_dssp HHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEE
T ss_pred CcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcCCCCEEE
Confidence 455533 333344332 346899999999999999988864 3567788887654432 3344455688999
Q ss_pred ecc-----cccc-cCCCCCccEEEE
Q 012133 120 ATD-----VAAR-GLDIPNVDLIIH 138 (470)
Q Consensus 120 aTd-----v~~~-Gidip~v~~VI~ 138 (470)
+|+ .+.+ .+++..+++||.
T Consensus 155 ~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 155 GTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp ECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred ECHHHHHHHHHhCCcCcccCcEEEE
Confidence 994 2222 355666776664
No 125
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=86.92 E-value=1.7 Score=42.79 Aligned_cols=69 Identities=16% Similarity=0.135 Sum_probs=52.2
Q ss_pred CeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc-----c-cccCCCCCcc
Q 012133 66 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----A-ARGLDIPNVD 134 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv-----~-~~Gidip~v~ 134 (470)
.++||.+||++.+.++++.+.+ .+.+..+||+.+..++...+.. ..+|+|+|+- + ...+++..++
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTT----CCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhC----CCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 4799999999999999988763 4678999999888766555432 5789999972 1 2235677888
Q ss_pred EEEE
Q 012133 135 LIIH 138 (470)
Q Consensus 135 ~VI~ 138 (470)
+||.
T Consensus 178 ~iVi 181 (417)
T 2i4i_A 178 YLVL 181 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
No 126
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=86.75 E-value=1.2 Score=45.87 Aligned_cols=70 Identities=11% Similarity=0.150 Sum_probs=48.0
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccc-----ccc-C-CCCC
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----ARG-L-DIPN 132 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~-----~~G-i-dip~ 132 (470)
..++||.+||+..+.+.++.+.+ .+.+..+||+.+...+...+.. ..+|+|+|.-. ..+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHH----HCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhC----CCCEEEECHHHHHHHHHhCccccccc
Confidence 67899999999999998888764 5789999999876654433322 46899999622 222 4 6778
Q ss_pred ccEEEE
Q 012133 133 VDLIIH 138 (470)
Q Consensus 133 v~~VI~ 138 (470)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888874
No 127
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=85.46 E-value=2.1 Score=42.54 Aligned_cols=70 Identities=24% Similarity=0.344 Sum_probs=54.0
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc--CC---cEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc-cc-----ccCCCCC
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS--II---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AA-----RGLDIPN 132 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~--~~---~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv-~~-----~Gidip~ 132 (470)
...++||.||++..+.+.++.+.+ .+ .+..+||+....++..... ..+|+|+|.- +. .-+.+.+
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 568999999999999999998875 33 7999999999887765543 3689999952 21 2456778
Q ss_pred ccEEEE
Q 012133 133 VDLIIH 138 (470)
Q Consensus 133 v~~VI~ 138 (470)
+++||.
T Consensus 126 ~~~vIi 131 (494)
T 1wp9_A 126 VSLIVF 131 (494)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 888874
No 128
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=85.14 E-value=1.1 Score=40.16 Aligned_cols=71 Identities=14% Similarity=0.211 Sum_probs=46.0
Q ss_pred cccHHHH-HHHHHHHHc---CCCeEEEEeCchHHHHHHHHHHhc---------CCcEEEEeCCCCHHHHHHHHcccccCC
Q 012133 48 ATSKRTI-LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGFRQGK 114 (470)
Q Consensus 48 ~~~k~~~-l~~ll~~~~---~~~~~lVF~~t~~~~~~l~~~l~~---------~~~~~~lhg~~~~~~R~~~~~~f~~g~ 114 (470)
..-|..+ +.-++..+. ...++||.++|++.+.++++.+.+ .+.+..++|+.+..++ .+.+. ..
T Consensus 51 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~-~~ 126 (219)
T 1q0u_A 51 GTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA---LEKLN-VQ 126 (219)
T ss_dssp SHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT---TCCCS-SC
T ss_pred CChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH---HHHcC-CC
Confidence 3456543 333344332 246899999999999999887753 3568888988754432 22332 35
Q ss_pred eeEEEecc
Q 012133 115 FTVLVATD 122 (470)
Q Consensus 115 ~~iLVaTd 122 (470)
.+|+|+|.
T Consensus 127 ~~Iiv~Tp 134 (219)
T 1q0u_A 127 PHIVIGTP 134 (219)
T ss_dssp CSEEEECH
T ss_pred CCEEEeCH
Confidence 68999995
No 129
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=84.76 E-value=1.2 Score=45.71 Aligned_cols=70 Identities=13% Similarity=0.219 Sum_probs=50.4
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc-----cccc-C-CCCC
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-L-DIPN 132 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv-----~~~G-i-dip~ 132 (470)
..++||.+||+..+.+.++.+.+ .+.+..+||+.+...+...+.. ..+|+|+|.- +..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIE----DNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHH----HCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhc----CCCEEEECHHHHHHHHhcCccccccc
Confidence 67899999999999988887764 5789999999876654333322 4789999962 1222 3 5667
Q ss_pred ccEEEE
Q 012133 133 VDLIIH 138 (470)
Q Consensus 133 v~~VI~ 138 (470)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788774
No 130
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=84.30 E-value=0.25 Score=28.08 Aligned_cols=16 Identities=38% Similarity=0.831 Sum_probs=14.9
Q ss_pred cccCCCCCccCCCCCC
Q 012133 455 CFNCGKSGHRASECPN 470 (470)
Q Consensus 455 c~~c~~~gh~~~~c~~ 470 (470)
|-+|-.-||+..||+.
T Consensus 6 Ce~CE~FGH~t~~C~d 21 (26)
T 2hqh_E 6 CEICEMFGHWATNCND 21 (26)
T ss_dssp ETTTTEESSCGGGCCT
T ss_pred chHHHHhCcccccCCc
Confidence 9999999999999974
No 131
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=84.02 E-value=1.8 Score=47.05 Aligned_cols=70 Identities=10% Similarity=0.106 Sum_probs=47.5
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc-----ccc-cC-CCCC
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR-GL-DIPN 132 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv-----~~~-Gi-dip~ 132 (470)
..++||.|||+..+.+.+..+.+ .+.+..+||+.+...+...+.. ..+|+|+|.- +.. -+ ++.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHH----TCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhC----CCCEEEEchHHHHHHHHhcccccccc
Confidence 67999999999999998887763 5889999999876654433322 5789999952 122 23 5667
Q ss_pred ccEEEE
Q 012133 133 VDLIIH 138 (470)
Q Consensus 133 v~~VI~ 138 (470)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788874
No 132
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=83.84 E-value=0.25 Score=37.52 Aligned_cols=15 Identities=7% Similarity=0.000 Sum_probs=4.4
Q ss_pred cccCCCCCccCCCCC
Q 012133 455 CFNCGKSGHRASECP 469 (470)
Q Consensus 455 c~~c~~~gh~~~~c~ 469 (470)
||+|+++||+++||+
T Consensus 27 cY~c~~~gh~~~~c~ 41 (83)
T 3nyb_B 27 AYILVDDNEKAKPKV 41 (83)
T ss_dssp CCCBC----------
T ss_pred ccccccCCccccccc
Confidence 888888888888885
No 133
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=83.15 E-value=2.5 Score=41.01 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=52.4
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc------ccccCCCCC
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPN 132 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv------~~~Gidip~ 132 (470)
...++||.+|++..+.++++.+.+ .+.+..++|+.+..++...+. ..+|+|+|.- ....+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 346999999999999999888763 367899999998877665554 3679999952 122455677
Q ss_pred ccEEEE
Q 012133 133 VDLIIH 138 (470)
Q Consensus 133 v~~VI~ 138 (470)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 788774
No 134
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=82.89 E-value=3.7 Score=38.79 Aligned_cols=84 Identities=17% Similarity=0.205 Sum_probs=57.1
Q ss_pred cccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 48 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 48 ~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
..-|..+....+.. ...++||.+|++..+.++++.+.+ ...+..+|++.+..++...+. ..+|+|+|.
T Consensus 41 GsGKT~~~~~~~~~--~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~v~T~ 113 (337)
T 2z0m_A 41 GSGKTAAYAIPILE--LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-----NADIVVATP 113 (337)
T ss_dssp TSSHHHHHHHHHHH--HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-----TCSEEEECH
T ss_pred CCcHHHHHHHHHHh--hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-----CCCEEEECH
Confidence 34565433332222 357999999999999999988873 367889999998876655443 268999995
Q ss_pred cc------cccCCCCCccEEEE
Q 012133 123 VA------ARGLDIPNVDLIIH 138 (470)
Q Consensus 123 v~------~~Gidip~v~~VI~ 138 (470)
-. ..-+++.++++||.
T Consensus 114 ~~l~~~~~~~~~~~~~~~~iVi 135 (337)
T 2z0m_A 114 GRLLDLWSKGVIDLSSFEIVII 135 (337)
T ss_dssp HHHHHHHHTTSCCGGGCSEEEE
T ss_pred HHHHHHHHcCCcchhhCcEEEE
Confidence 21 22345667777774
No 135
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=82.63 E-value=6 Score=37.74 Aligned_cols=87 Identities=22% Similarity=0.267 Sum_probs=58.9
Q ss_pred CcccHHHHHH-HHHHHHc--CCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEE
Q 012133 47 TATSKRTILS-DLITVYA--KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVL 118 (470)
Q Consensus 47 ~~~~k~~~l~-~ll~~~~--~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iL 118 (470)
...-|..+.. .++.... ...++||.+|++..++++++.+.+ .+.+..++++....++...+. ..+|+
T Consensus 53 TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~ii 127 (367)
T 1hv8_A 53 TGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIV 127 (367)
T ss_dssp SSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEE
T ss_pred CCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEE
Confidence 3346654433 3333332 356899999999999999988874 367888999988766555443 46899
Q ss_pred Eecccc------cccCCCCCccEEEE
Q 012133 119 VATDVA------ARGLDIPNVDLIIH 138 (470)
Q Consensus 119 VaTdv~------~~Gidip~v~~VI~ 138 (470)
|+|.-. ...+++.++++||.
T Consensus 128 v~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 128 VGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp EECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred EecHHHHHHHHHcCCcccccCCEEEE
Confidence 999621 22356777888774
No 136
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=82.17 E-value=4.9 Score=39.36 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=53.0
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-----cccc-cCCCCC
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPN 132 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-----v~~~-Gidip~ 132 (470)
...++||.+||++.+.++++.+.+ .+.+..++++.+..++...+.. ...|+|+|+ .+.+ .+++..
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY----GQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhc----CCCEEEcCHHHHHHHHHhCCccHhh
Confidence 457999999999999999988764 3678889999887766555542 458999995 2223 466777
Q ss_pred ccEEEE
Q 012133 133 VDLIIH 138 (470)
Q Consensus 133 v~~VI~ 138 (470)
+++||.
T Consensus 180 ~~~vVi 185 (410)
T 2j0s_A 180 IKMLVL 185 (410)
T ss_dssp CCEEEE
T ss_pred eeEEEE
Confidence 888774
No 137
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=81.44 E-value=6.3 Score=38.31 Aligned_cols=87 Identities=17% Similarity=0.171 Sum_probs=58.2
Q ss_pred cccHHHH-HHHHHHHHc---CCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEE
Q 012133 48 ATSKRTI-LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVL 118 (470)
Q Consensus 48 ~~~k~~~-l~~ll~~~~---~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iL 118 (470)
..-|..+ +..++.... ...++||.+|++..+.++++.+.+ .+.+..++++.........+ ....+|+
T Consensus 68 GsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iv 143 (400)
T 1s2m_A 68 GTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRL----NETVHIL 143 (400)
T ss_dssp TSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHT----TSCCSEE
T ss_pred CcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHh----cCCCCEE
Confidence 3456543 333333332 345899999999999999888764 46788899998766544333 2367899
Q ss_pred Eeccc-----c-cccCCCCCccEEEE
Q 012133 119 VATDV-----A-ARGLDIPNVDLIIH 138 (470)
Q Consensus 119 VaTdv-----~-~~Gidip~v~~VI~ 138 (470)
|+|.- + ....++.++++||.
T Consensus 144 v~T~~~l~~~~~~~~~~~~~~~~vIi 169 (400)
T 1s2m_A 144 VGTPGRVLDLASRKVADLSDCSLFIM 169 (400)
T ss_dssp EECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred EEchHHHHHHHHhCCcccccCCEEEE
Confidence 99952 2 23366788888874
No 138
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=81.07 E-value=24 Score=35.30 Aligned_cols=58 Identities=16% Similarity=0.108 Sum_probs=33.0
Q ss_pred CeEEEEEeeCCccccCCcchhhHHhHhhhhcCcCcCccccEEEeecC----ccceeEeec-CHHHHHHHHhh
Q 012133 262 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADD----RVQGAVFDL-PEEIAKELLNK 328 (470)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~Ig~I~i~~~~----~~~ga~fdv-~~~~a~~i~~~ 328 (470)
...+|+|..-. ..++..+|..++..+.. |-.|.|+.+. ....+||.. ..+.|..+++.
T Consensus 101 ~~~~lfV~nL~----~~~te~~L~~~F~~~G~-----I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 101 AFKTLFVARVN----YDTTESKLRREFEVYGP-----IKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred CCCEEEEeCCC----CCCCHHHHHHHHHHcCC-----eeEEEeeccCCCCCccceEEEeeccHHHHHHHHHH
Confidence 45678885432 35778888888876544 5556665431 123466666 34445555544
No 139
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=79.32 E-value=2.4 Score=40.19 Aligned_cols=85 Identities=8% Similarity=0.060 Sum_probs=54.1
Q ss_pred CcccHHHH-HHHHHHHHc---CCCeEEEEeCchHHHHHHHHHHhc------CCcEEEEeCCCCHHHHHHHHcccccCCee
Q 012133 47 TATSKRTI-LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFT 116 (470)
Q Consensus 47 ~~~~k~~~-l~~ll~~~~---~~~~~lVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~ 116 (470)
...-|..+ +.-++..+. ...++||.+||++.|.+++..+.. .+.+..++++.+...+. ....+
T Consensus 140 TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 212 (300)
T 3fmo_B 140 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQ 212 (300)
T ss_dssp TTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCS
T ss_pred CCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCC
Confidence 33456543 334444432 233799999999999998877763 25677777775432211 23568
Q ss_pred EEEecccc------c-ccCCCCCccEEEE
Q 012133 117 VLVATDVA------A-RGLDIPNVDLIIH 138 (470)
Q Consensus 117 iLVaTdv~------~-~Gidip~v~~VI~ 138 (470)
|||+|+-. . ..+++..+.+||.
T Consensus 213 IlV~TP~~l~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 213 IVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp EEEECHHHHHHHHTTTCCCCGGGCSEEEE
T ss_pred EEEECHHHHHHHHHhcCCCChhhceEEEE
Confidence 99999732 1 3577888888875
No 140
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=78.52 E-value=7.2 Score=32.63 Aligned_cols=58 Identities=14% Similarity=0.051 Sum_probs=34.5
Q ss_pred CeEEEEEeeCCccccCCcchhhHHhHhhhhcCcCcCccccEEEeecCc----cceeEeec-CHHHHHHHHhh
Q 012133 262 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDR----VQGAVFDL-PEEIAKELLNK 328 (470)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~Ig~I~i~~~~~----~~ga~fdv-~~~~a~~i~~~ 328 (470)
...+|+|..- ...++..+|..++..+.. |-.|.|..+.. ...+|++. ..+.|+++++.
T Consensus 38 ~~~~l~V~nl----p~~~t~~~l~~~F~~~G~-----i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 100 (156)
T 1h2v_Z 38 KSCTLYVGNL----SFYTTEEQIYELFSKSGD-----IKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 (156)
T ss_dssp TCCEEEEESC----CTTCCHHHHHHHHGGGSC-----EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCC----CCCCCHHHHHHHHHhcCC-----eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3457777533 235778888888876543 55677755421 22466666 45566666664
No 141
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=78.38 E-value=2 Score=38.95 Aligned_cols=89 Identities=18% Similarity=0.284 Sum_probs=53.3
Q ss_pred CcccHHHH-HHHHHHHHc----CCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCee
Q 012133 47 TATSKRTI-LSDLITVYA----KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFT 116 (470)
Q Consensus 47 ~~~~k~~~-l~~ll~~~~----~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~ 116 (470)
...-|..+ +.-++.... ...++||.+||++.+.++++.+.+ .+.+..++++..... ..........+
T Consensus 75 TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 151 (245)
T 3dkp_A 75 TGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFD 151 (245)
T ss_dssp TTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCC
T ss_pred CCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCC
Confidence 34466543 333444332 334899999999999999988874 355666666532211 12223345678
Q ss_pred EEEeccc-----ccc---cCCCCCccEEEE
Q 012133 117 VLVATDV-----AAR---GLDIPNVDLIIH 138 (470)
Q Consensus 117 iLVaTdv-----~~~---Gidip~v~~VI~ 138 (470)
|+|+|+- +.. .+++.++.+||.
T Consensus 152 I~v~Tp~~l~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 152 ILVTTPNRLIYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp EEEECHHHHHHHHHSSSCSCCCTTCCEEEE
T ss_pred EEEECHHHHHHHHHhCCCCcccccCcEEEE
Confidence 9999952 112 356667776664
No 142
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=75.72 E-value=2.6 Score=46.87 Aligned_cols=70 Identities=11% Similarity=0.143 Sum_probs=46.5
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc-----cccc-C-CCCC
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-L-DIPN 132 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv-----~~~G-i-dip~ 132 (470)
..++||.+||+..+.+++..+.+ .+.+..+||+.+...+...+.. ..+|+|+|+- +..+ + .+.+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~----~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHH----HCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhcc----CCCEEEecHHHHHHHHHcCccccccC
Confidence 57899999999999998887764 5889999999876654333322 4689999952 1222 3 4566
Q ss_pred ccEEEE
Q 012133 133 VDLIIH 138 (470)
Q Consensus 133 v~~VI~ 138 (470)
+++||.
T Consensus 372 ~~liVi 377 (936)
T 4a2w_A 372 FTLMIF 377 (936)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788774
No 143
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=74.52 E-value=4.2 Score=39.77 Aligned_cols=87 Identities=14% Similarity=0.185 Sum_probs=57.1
Q ss_pred ccHHHH-HHHHHHHHc---CCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEE
Q 012133 49 TSKRTI-LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 119 (470)
Q Consensus 49 ~~k~~~-l~~ll~~~~---~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLV 119 (470)
.-|..+ +..++..+. ...++||.++|+..+.++++.+.. ...+..++++.....+.. .+.....+|+|
T Consensus 88 sGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv 164 (414)
T 3eiq_A 88 TGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQ---KLQMEAPHIIV 164 (414)
T ss_dssp SSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHH---HHTTTCCSEEE
T ss_pred CcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHH---HHhcCCCCEEE
Confidence 345433 334444432 456899999999999999988874 356777788776655433 33445689999
Q ss_pred ecc-----cc-cccCCCCCccEEEE
Q 012133 120 ATD-----VA-ARGLDIPNVDLIIH 138 (470)
Q Consensus 120 aTd-----v~-~~Gidip~v~~VI~ 138 (470)
+|+ .+ ...+++..+++||.
T Consensus 165 ~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 165 GTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp ECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred ECHHHHHHHHHcCCcccccCcEEEE
Confidence 995 22 23356677788774
No 144
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=74.38 E-value=27 Score=29.74 Aligned_cols=114 Identities=12% Similarity=0.201 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHcCCCcEEEeecccccccccceEEEEEEcCcccHHHHHHHHHHHH-cCCCeEEEEeCchHHHHHHHHHHh
Q 012133 8 PSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT 86 (470)
Q Consensus 8 p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~~lVF~~t~~~~~~l~~~l~ 86 (470)
+.+|.+++..++.+...+....... ..+... ......+....+.+.|... .....+.|.+.+...+..+.+.|.
T Consensus 8 t~~Il~~An~li~~~~~~~~~~~~G----~~p~~~-~~~~~~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~ 82 (174)
T 3dmn_A 8 TQQITDFTKEILVNGEAVTAFDRQG----DLPNVV-VTPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALK 82 (174)
T ss_dssp CHHHHHHHHTTSCC--------CCC----CCCEEE-EESSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCcccCCCCCC----CCCEEE-EeCCHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHH
Confidence 5778888988886543332211111 112212 1222233333444444322 235789999999999999999998
Q ss_pred c-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccccccCCCCCccEEEEecC
Q 012133 87 S-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 141 (470)
Q Consensus 87 ~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~v~~VI~~~~ 141 (470)
. ++.+..+..+-. .+ .-.|.|.|--.+.|+.+ +.||.+++
T Consensus 83 ~~gi~~~~l~~~~~---------~~---~~~v~v~t~~~~KGlEf---~~V~~~~~ 123 (174)
T 3dmn_A 83 ARGEQVTLIQTENQ---------RL---APGVIVVPSFLAKGLEF---DAVIVWNA 123 (174)
T ss_dssp TTTCCEEECSSCC----------CC---CSSEEEEEGGGCTTCCE---EEEEEETC
T ss_pred HcCCcceeeccccc---------cc---CCCeEEEEccccCCcCC---CEEEEecC
Confidence 5 577776665421 12 23689999999999987 55565554
No 145
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=74.01 E-value=6.2 Score=42.84 Aligned_cols=74 Identities=8% Similarity=0.050 Sum_probs=54.2
Q ss_pred HHHHHcCCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc-c-------
Q 012133 58 LITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-A------- 124 (470)
Q Consensus 58 ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv-~------- 124 (470)
+++.+ ....++|.|+|++.|.+.++.+.. ++.+.++.|+++..+|.... ...|+|+|+- +
T Consensus 118 ~l~aL-~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D 190 (844)
T 1tf5_A 118 YLNAL-TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRD 190 (844)
T ss_dssp HHHHT-TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHH
T ss_pred HHHHH-cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHH
Confidence 33444 456899999999999999887763 57899999999988776553 3689999971 1
Q ss_pred -----cccCCCCCccEEEE
Q 012133 125 -----ARGLDIPNVDLIIH 138 (470)
Q Consensus 125 -----~~Gidip~v~~VI~ 138 (470)
...+++..+.++|.
T Consensus 191 ~m~~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 191 NMVLYKEQMVQRPLHFAVI 209 (844)
T ss_dssp TTCSSGGGCCCCCCCEEEE
T ss_pred hhhcchhhhcccCCCEEEE
Confidence 12356677777663
No 146
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=73.02 E-value=4 Score=43.31 Aligned_cols=69 Identities=12% Similarity=0.227 Sum_probs=49.2
Q ss_pred CeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc-----cccc-C-CCCCc
Q 012133 66 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-L-DIPNV 133 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv-----~~~G-i-dip~v 133 (470)
.++||.+||+..+.+.++.+.+ .+.+..+||+.+...+...+.. ..+|+|+|+- +..+ + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVE----NNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHH----TCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhcc----CCCEEEECHHHHHHHHhcCcccccccc
Confidence 7899999999999988888764 4789999999865433332221 4789999962 2222 3 56677
Q ss_pred cEEEE
Q 012133 134 DLIIH 138 (470)
Q Consensus 134 ~~VI~ 138 (470)
++||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88874
No 147
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=73.02 E-value=6.1 Score=35.78 Aligned_cols=60 Identities=12% Similarity=0.150 Sum_probs=34.7
Q ss_pred CeEEEEEeeCCccccCCcchhhHHhHhhhhcCcCcCccccEEEeecCc----cceeEeec-CHHHHHHHHhh
Q 012133 262 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDR----VQGAVFDL-PEEIAKELLNK 328 (470)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~Ig~I~i~~~~~----~~ga~fdv-~~~~a~~i~~~ 328 (470)
...+|+|..-. ..++..+|..++..+.. ..|-.|+|..+.. +..+|++. ..+.|+++++.
T Consensus 67 ~~~~lfVgnL~----~~~te~~L~~~F~~~G~---~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~ 131 (229)
T 3q2s_C 67 KRIALYIGNLT----WWTTDEDLTEAVHSLGV---NDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDL 131 (229)
T ss_dssp --CEEEEESCC----TTCCHHHHHHHHHTTTC---CCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTT
T ss_pred CccEEEEeCCC----CCCCHHHHHHHHHHHCC---cceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 34578885432 35778888888765541 1466777765521 23466666 34556666664
No 148
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=71.71 E-value=9.1 Score=38.49 Aligned_cols=85 Identities=7% Similarity=0.020 Sum_probs=51.8
Q ss_pred CcccHHHH-HHHHHHHHcC---CCeEEEEeCchHHHHHHHHHHhc------CCcEEEEeCCCCHHHHHHHHcccccCCee
Q 012133 47 TATSKRTI-LSDLITVYAK---GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFT 116 (470)
Q Consensus 47 ~~~~k~~~-l~~ll~~~~~---~~~~lVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~ 116 (470)
...-|..+ +..++..+.. ..++||.+||++.+.++++.+.. .+.+....+..... .......+
T Consensus 140 TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 212 (479)
T 3fmp_B 140 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------RGQKISEQ 212 (479)
T ss_dssp SSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCC-------TTCCCCCS
T ss_pred CCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccc-------ccccCCCC
Confidence 33466644 3334433322 23899999999999998777653 24566666553321 11123458
Q ss_pred EEEeccccc-------ccCCCCCccEEEE
Q 012133 117 VLVATDVAA-------RGLDIPNVDLIIH 138 (470)
Q Consensus 117 iLVaTdv~~-------~Gidip~v~~VI~ 138 (470)
|+|+|+-.- ..+++.++.+||.
T Consensus 213 Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 241 (479)
T 3fmp_B 213 IVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (479)
T ss_dssp EEEECHHHHHHHHTTSCCCCGGGCCEEEE
T ss_pred EEEECchHHHHHHHhcCCcCcccCCEEEE
Confidence 999997322 3567788888884
No 149
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=71.49 E-value=8 Score=41.95 Aligned_cols=69 Identities=7% Similarity=-0.056 Sum_probs=51.9
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccc------cc------
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------AR------ 126 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~------~~------ 126 (470)
....++|.++|+..|.+.++.+.. ++.+.++.|+++..+|.... .+.|+|+|+-- ..
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~~ 187 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFSP 187 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhccH
Confidence 456899999999999998887763 57899999999987665544 36899999721 22
Q ss_pred -cCCCCCccEEEE
Q 012133 127 -GLDIPNVDLIIH 138 (470)
Q Consensus 127 -Gidip~v~~VI~ 138 (470)
-+....+.++|.
T Consensus 188 ~~~~~~~l~~lVl 200 (853)
T 2fsf_A 188 EERVQRKLHYALV 200 (853)
T ss_dssp GGCCCCSCCEEEE
T ss_pred hHhcccCCcEEEE
Confidence 255577777774
No 150
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=69.66 E-value=4.5 Score=35.46 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=34.7
Q ss_pred CCeEEEEeCchHHHHH-HHHHHhc----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 65 GGKTIVFTQTKRDADE-VSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~-l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
..++||+|+++..+++ +.+.+.. .+.+..++++.+...+...+.. ..+|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVK----SCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHHH----HCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhcc----CCCEEEECH
Confidence 5799999999999888 5555543 4688889987654332222111 467899985
No 151
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=68.66 E-value=9.9 Score=41.50 Aligned_cols=76 Identities=11% Similarity=0.051 Sum_probs=54.9
Q ss_pred HHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccc------
Q 012133 56 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ 124 (470)
Q Consensus 56 ~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~------ 124 (470)
.-++..+ ....++|.++|+..|.+.++.+.. ++.+.++.|+++..+|.... ...|+++|+--
T Consensus 144 P~~l~aL-~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyL 216 (922)
T 1nkt_A 144 PAYLNAL-AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYL 216 (922)
T ss_dssp HHHHHHT-TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHH
T ss_pred HHHHHHH-hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHH
Confidence 3334444 456899999999999988887763 57899999999988776654 26899999621
Q ss_pred c-------ccCCCCCccEEEE
Q 012133 125 A-------RGLDIPNVDLIIH 138 (470)
Q Consensus 125 ~-------~Gidip~v~~VI~ 138 (470)
. .-+.+..+.++|.
T Consensus 217 rD~m~~~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 217 RDNMAHSLDDLVQRGHHYAIV 237 (922)
T ss_dssp HHTTCSSGGGCCCCCCCEEEE
T ss_pred HhhhhccHhhhccCCCCEEEE
Confidence 1 1355667777663
No 152
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=67.44 E-value=1.1 Score=43.85 Aligned_cols=8 Identities=13% Similarity=0.135 Sum_probs=3.8
Q ss_pred CHHHHHHH
Q 012133 233 GTDALAAA 240 (470)
Q Consensus 233 ~~~~l~~a 240 (470)
.+..||+|
T Consensus 192 ~Ps~IAaA 199 (358)
T 2pk2_A 192 TPPVVACV 199 (358)
T ss_dssp CHHHHTTT
T ss_pred CHHHHHHH
Confidence 35555443
No 153
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=67.39 E-value=5.1 Score=40.74 Aligned_cols=67 Identities=12% Similarity=0.184 Sum_probs=48.9
Q ss_pred CCeEEEEeCchHHHHHHHHHHhcC-----CcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc-cccc--CCCCCccEE
Q 012133 65 GGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARG--LDIPNVDLI 136 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv-~~~G--idip~v~~V 136 (470)
..++||.+||+..+.+.++.+.+. ..+..+|++.+..++ ..+..+|+|+|.- +..- ..+.++.+|
T Consensus 157 ~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~~~~~~~~li 229 (510)
T 2oca_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPKEWFSQFGMM 229 (510)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCGGGGGGEEEE
T ss_pred CCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchhhhhhcCCEE
Confidence 359999999999999999998752 368889998876654 3456899999953 2222 345667777
Q ss_pred EE
Q 012133 137 IH 138 (470)
Q Consensus 137 I~ 138 (470)
|.
T Consensus 230 Ii 231 (510)
T 2oca_A 230 MN 231 (510)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 154
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=66.68 E-value=11 Score=41.20 Aligned_cols=59 Identities=12% Similarity=0.047 Sum_probs=46.7
Q ss_pred HHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 57 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 57 ~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
-++..+ ....++|.++|+..|.+.++.+.. ++.+..+.|+++..+|.... .++|+|+|+
T Consensus 113 ~~L~aL-~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 113 VALNAL-TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp HHHHHT-TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred HHHHHH-hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 334444 456899999999999998888763 57899999999988777765 368999996
No 155
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=66.47 E-value=45 Score=26.07 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=40.8
Q ss_pred EEEEeCchHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEe
Q 012133 68 TIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120 (470)
Q Consensus 68 ~lVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVa 120 (470)
.+||....+-..++...+. .+..+..|+++...+.|.+-++.|......+--.
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtv 58 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTV 58 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEEC
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeee
Confidence 4677777777777777776 4788999999999998888899888655554433
No 156
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=66.40 E-value=7.3 Score=44.02 Aligned_cols=69 Identities=19% Similarity=0.163 Sum_probs=50.4
Q ss_pred HHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-----ccccc-CCCC
Q 012133 59 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIP 131 (470)
Q Consensus 59 l~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-----v~~~G-idip 131 (470)
+.......++||.+||+..+.+.++.+.. .-.+..++|+++ .+...+|||+|+ .+.++ ..+.
T Consensus 221 ~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~ 289 (1108)
T 3l9o_A 221 AQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMR 289 (1108)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHH
T ss_pred HHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccc
Confidence 34445678999999999999999999986 346888999876 234678999994 33333 3356
Q ss_pred CccEEEE
Q 012133 132 NVDLIIH 138 (470)
Q Consensus 132 ~v~~VI~ 138 (470)
++.+||.
T Consensus 290 ~l~lVVI 296 (1108)
T 3l9o_A 290 EVAWVIF 296 (1108)
T ss_dssp HEEEEEE
T ss_pred cCCEEEE
Confidence 7777773
No 157
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=64.84 E-value=6.5 Score=42.05 Aligned_cols=83 Identities=20% Similarity=0.342 Sum_probs=55.5
Q ss_pred ccHHHHH-HHHHHHH-cCCCeEEEEeCchHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 49 TSKRTIL-SDLITVY-AKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 49 ~~k~~~l-~~ll~~~-~~~~~~lVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
.-|..+. ..+++.. ..+.++|+.+|++..+.++++.+.+ ++.+..+||+.+...+. .+..+|+|+|+
T Consensus 50 sGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tp 122 (720)
T 2zj8_A 50 SGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEW-------LGKYDIIIATA 122 (720)
T ss_dssp GCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGG-------GGGCSEEEECH
T ss_pred cHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccc-------cCCCCEEEECH
Confidence 4565433 2333322 2467999999999999999998863 57899999987655431 13678999997
Q ss_pred -----cccccCC-CCCccEEEE
Q 012133 123 -----VAARGLD-IPNVDLIIH 138 (470)
Q Consensus 123 -----v~~~Gid-ip~v~~VI~ 138 (470)
.+..... +.++.+||.
T Consensus 123 e~l~~~~~~~~~~l~~~~~vIi 144 (720)
T 2zj8_A 123 EKFDSLLRHGSSWIKDVKILVA 144 (720)
T ss_dssp HHHHHHHHHTCTTGGGEEEEEE
T ss_pred HHHHHHHHcChhhhhcCCEEEE
Confidence 2222222 567778774
No 158
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=62.29 E-value=2 Score=27.33 Aligned_cols=16 Identities=38% Similarity=0.831 Sum_probs=15.1
Q ss_pred cccCCCCCccCCCCCC
Q 012133 455 CFNCGKSGHRASECPN 470 (470)
Q Consensus 455 c~~c~~~gh~~~~c~~ 470 (470)
|-+|--.|||..+|+.
T Consensus 23 Cd~CEvFGH~t~~Cnd 38 (42)
T 2pzo_E 23 CEICEMFGHWATNCND 38 (42)
T ss_dssp ETTTTEESSCGGGCCT
T ss_pred cccccccCcccccCCc
Confidence 9999999999999974
No 159
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=61.76 E-value=9.2 Score=40.73 Aligned_cols=83 Identities=17% Similarity=0.224 Sum_probs=56.5
Q ss_pred ccHHHHH-HHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-
Q 012133 49 TSKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD- 122 (470)
Q Consensus 49 ~~k~~~l-~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd- 122 (470)
.-|.... ..+++....+.++|+.+|++..+.+.++.++. ++.+..++|+....++ . .+..+|+|+|+
T Consensus 51 sGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-----~--~~~~~Iiv~Tpe 123 (702)
T 2p6r_A 51 AGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-----H--LGDCDIIVTTSE 123 (702)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-----C--STTCSEEEEEHH
T ss_pred cHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-----h--ccCCCEEEECHH
Confidence 4564433 33344444568999999999999999998853 4678999998765432 1 23689999996
Q ss_pred ----cccccCC-CCCccEEEE
Q 012133 123 ----VAARGLD-IPNVDLIIH 138 (470)
Q Consensus 123 ----v~~~Gid-ip~v~~VI~ 138 (470)
.+..... +.++.+||.
T Consensus 124 ~l~~~l~~~~~~l~~~~~vIi 144 (702)
T 2p6r_A 124 KADSLIRNRASWIKAVSCLVV 144 (702)
T ss_dssp HHHHHHHTTCSGGGGCCEEEE
T ss_pred HHHHHHHcChhHHhhcCEEEE
Confidence 3333333 667888884
No 160
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=61.16 E-value=15 Score=37.60 Aligned_cols=70 Identities=14% Similarity=0.105 Sum_probs=48.6
Q ss_pred CeEEEEeCchHHHHHHHHHHhc---------CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccc-----cc--cCC
Q 012133 66 GKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----AR--GLD 129 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~---------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~-----~~--Gid 129 (470)
.++||.+||++.+.++++.+.+ .+.+..++++.+...... .+.....+|||+|+-. .+ ...
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 223 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMN---KMNKLRPNIVIATPGRLIDVLEKYSNKF 223 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHH---HHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHH---HHhcCCCCEEEECcHHHHHHHHhccccc
Confidence 4899999999999999888864 245777888876554433 3333467999999632 12 235
Q ss_pred CCCccEEEE
Q 012133 130 IPNVDLIIH 138 (470)
Q Consensus 130 ip~v~~VI~ 138 (470)
+..+.+||.
T Consensus 224 ~~~~~~lVi 232 (563)
T 3i5x_A 224 FRFVDYKVL 232 (563)
T ss_dssp CTTCCEEEE
T ss_pred cccceEEEE
Confidence 677888774
No 161
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=61.06 E-value=3 Score=44.37 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=46.8
Q ss_pred CeEEEEeCchHHHHHH-HHHHhc----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc-cc-----------ccC
Q 012133 66 GKTIVFTQTKRDADEV-SLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AA-----------RGL 128 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l-~~~l~~----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv-~~-----------~Gi 128 (470)
.++||.+|++..+.+. ++.|.+ .+.+..+||+.+..++...+. +..+|||+|.- +. ..+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 7899999999999988 877764 278999999987655433332 36799999962 22 235
Q ss_pred CCCCccEEEE
Q 012133 129 DIPNVDLIIH 138 (470)
Q Consensus 129 dip~v~~VI~ 138 (470)
.+..+++||.
T Consensus 133 ~~~~~~lvVi 142 (699)
T 4gl2_A 133 QLSDFSLIII 142 (699)
T ss_dssp CGGGCSEEEE
T ss_pred ecccCcEEEE
Confidence 6677888774
No 162
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=58.59 E-value=5.1 Score=32.25 Aligned_cols=44 Identities=18% Similarity=0.147 Sum_probs=32.0
Q ss_pred HHHHHHcCCCeEEEEeCchHH--HHHHHHHHhc-CCcEEEEeCCCCH
Q 012133 57 DLITVYAKGGKTIVFTQTKRD--ADEVSLALTS-IIASEALHGDISQ 100 (470)
Q Consensus 57 ~ll~~~~~~~~~lVF~~t~~~--~~~l~~~l~~-~~~~~~lhg~~~~ 100 (470)
..+..+.++.++||||.+-.. +..++..|.. ++.+..|.|++..
T Consensus 63 ~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~~ 109 (124)
T 3flh_A 63 TRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEG 109 (124)
T ss_dssp HHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHHH
T ss_pred HHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHHH
Confidence 334444566799999998766 6778888874 7888888888643
No 163
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=58.47 E-value=3.8 Score=42.63 Aligned_cols=70 Identities=14% Similarity=0.108 Sum_probs=48.7
Q ss_pred CeEEEEeCchHHHHHHHHHHhc---------CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc-----ccc--cCC
Q 012133 66 GKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR--GLD 129 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~---------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv-----~~~--Gid 129 (470)
.++||.+||++.+.++++.+.+ .+.+..++++.+....... +.....+|||+|+- +.+ ...
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNK---MNKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHH---HHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHH---HhcCCCCEEEECHHHHHHHHHhccccc
Confidence 4899999999999999888764 2457778888765544333 33345789999962 122 345
Q ss_pred CCCccEEEE
Q 012133 130 IPNVDLIIH 138 (470)
Q Consensus 130 ip~v~~VI~ 138 (470)
+..+.+||.
T Consensus 173 ~~~~~~lVi 181 (579)
T 3sqw_A 173 FRFVDYKVL 181 (579)
T ss_dssp CTTCCEEEE
T ss_pred cccCCEEEE
Confidence 677888774
No 164
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=58.15 E-value=9 Score=29.91 Aligned_cols=44 Identities=11% Similarity=0.111 Sum_probs=34.1
Q ss_pred HHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCH
Q 012133 57 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQ 100 (470)
Q Consensus 57 ~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~ 100 (470)
..+..+.++.+++|||.+-..+...+..|.. ++.+..|.|++..
T Consensus 47 ~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 47 EKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp HHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred HHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 3334445667999999998888888898885 6789999998644
No 165
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=56.99 E-value=2.2 Score=41.66 Aligned_cols=6 Identities=33% Similarity=0.490 Sum_probs=2.3
Q ss_pred HHHHhh
Q 012133 323 KELLNK 328 (470)
Q Consensus 323 ~~i~~~ 328 (470)
.++++.
T Consensus 239 ~~il~~ 244 (358)
T 2pk2_A 239 HEFLQI 244 (358)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333433
No 166
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=54.86 E-value=17 Score=40.48 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=46.0
Q ss_pred HcCCCeEEEEeCchHHHHHHHHHHhc---CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccc-----cccc-CCCCC
Q 012133 62 YAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-LDIPN 132 (470)
Q Consensus 62 ~~~~~~~lVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv-----~~~G-idip~ 132 (470)
.....++||.+|++..+.++++.|.+ .+.+..+||+.+. +...+|+|+|+- +.++ ..+.+
T Consensus 79 ~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~ 147 (997)
T 4a4z_A 79 HRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQI-----------NPDANCLIMTTEILRSMLYRGADLIRD 147 (997)
T ss_dssp HHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCEE-----------CTTSSEEEEEHHHHHHHHHHTCSGGGG
T ss_pred HhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCcc-----------CCCCCEEEECHHHHHHHHHhCchhhcC
Confidence 34567899999999999999999986 3579999998742 245688888852 1122 23455
Q ss_pred ccEEE
Q 012133 133 VDLII 137 (470)
Q Consensus 133 v~~VI 137 (470)
+.+||
T Consensus 148 l~lvV 152 (997)
T 4a4z_A 148 VEFVI 152 (997)
T ss_dssp EEEEE
T ss_pred CCEEE
Confidence 66665
No 167
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=51.52 E-value=34 Score=32.67 Aligned_cols=83 Identities=14% Similarity=0.183 Sum_probs=53.3
Q ss_pred cccHHHHH-HHHHHHHc---CCCeEEEEeCchHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHcccccCCeeEE
Q 012133 48 ATSKRTIL-SDLITVYA---KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVL 118 (470)
Q Consensus 48 ~~~k~~~l-~~ll~~~~---~~~~~lVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iL 118 (470)
..-|..+. ..++.... ...++||.+||+..+.++++.+.+ .+.+..++++.... ......+|+
T Consensus 54 GsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ii 125 (395)
T 3pey_A 54 GTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEK--------NKQINAQVI 125 (395)
T ss_dssp TSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCT--------TSCBCCSEE
T ss_pred CCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhh--------hccCCCCEE
Confidence 34665433 33344332 356899999999999999998874 25567777663221 122357899
Q ss_pred Eecccc------cccCCCCCccEEEE
Q 012133 119 VATDVA------ARGLDIPNVDLIIH 138 (470)
Q Consensus 119 VaTdv~------~~Gidip~v~~VI~ 138 (470)
|+|.-. ...+++.++++||.
T Consensus 126 v~T~~~l~~~~~~~~~~~~~~~~iIi 151 (395)
T 3pey_A 126 VGTPGTVLDLMRRKLMQLQKIKIFVL 151 (395)
T ss_dssp EECHHHHHHHHHTTCBCCTTCCEEEE
T ss_pred EEcHHHHHHHHHcCCcccccCCEEEE
Confidence 999622 33467788888874
No 168
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=51.51 E-value=35 Score=24.86 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=30.4
Q ss_pred HHHHHHH--cCCCeEEEEeCchHHHHHHHHHHhc-CCc-EEEEeCCCC
Q 012133 56 SDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 99 (470)
Q Consensus 56 ~~ll~~~--~~~~~~lVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~ 99 (470)
...+..+ .++.+++|+|.+-..+...+..|.. ++. +..+ |++.
T Consensus 30 ~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 30 KERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp HHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred HHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 3444444 4667999999998888888888875 564 5556 7653
No 169
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=51.17 E-value=17 Score=28.09 Aligned_cols=47 Identities=9% Similarity=0.053 Sum_probs=34.7
Q ss_pred HHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CC-cEEEEeCCCCHH
Q 012133 55 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDISQH 101 (470)
Q Consensus 55 l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~~~~ 101 (470)
|...+..+.++.+++|||.+-..+..++..|.. ++ .+..|.|++..-
T Consensus 48 l~~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W 96 (108)
T 1gmx_A 48 LGAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW 96 (108)
T ss_dssp HHHHHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHHH
T ss_pred HHHHHHhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHHH
Confidence 334444456678999999997788888888875 66 488898987543
No 170
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=50.74 E-value=83 Score=33.12 Aligned_cols=83 Identities=23% Similarity=0.306 Sum_probs=57.4
Q ss_pred EEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhcCC---cEEEEe--------------------CCCC-
Q 012133 44 ISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII---ASEALH--------------------GDIS- 99 (470)
Q Consensus 44 ~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~~---~~~~lh--------------------g~~~- 99 (470)
.-+....|.-++..++... +.++||.++++..|.+|+..|...+ .|..+- ...+
T Consensus 34 ~g~tgs~kt~~~a~~~~~~--~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~~~~~ 111 (664)
T 1c4o_A 34 LGATGTGKTVTMAKVIEAL--GRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASI 111 (664)
T ss_dssp EECTTSCHHHHHHHHHHHH--TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCCCSC
T ss_pred EcCCCcHHHHHHHHHHHHh--CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhhhccc
Confidence 3456678887777777654 4689999999999999999998532 233222 3332
Q ss_pred ----HHHHHHHHcccccCCeeEEEecccccccC
Q 012133 100 ----QHQRERTLNGFRQGKFTVLVATDVAARGL 128 (470)
Q Consensus 100 ----~~~R~~~~~~f~~g~~~iLVaTdv~~~Gi 128 (470)
..+|..++..+.+..-.|+|+|--+..++
T Consensus 112 ~~~i~~~R~~~l~~L~~~~~~ivV~s~~~l~~~ 144 (664)
T 1c4o_A 112 NPEIERLRHSTTRSLLTRRDVIVVASVSAIYGL 144 (664)
T ss_dssp CHHHHHHHHHHHHHHHHCSCEEEEEEGGGCSCC
T ss_pred CHHHHHHHHHHHHHHHhCCCeEEEecHHHHhcC
Confidence 45788888888766666888875444443
No 171
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=50.67 E-value=28 Score=36.87 Aligned_cols=67 Identities=19% Similarity=0.109 Sum_probs=49.2
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc--CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc---cccccCCCCCccEEEE
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD---VAARGLDIPNVDLIIH 138 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd---v~~~Gidip~v~~VI~ 138 (470)
...++||.+||++.|.++++.+.+ ...+...++... .....+|+|+|+ +....+++.++++||.
T Consensus 256 ~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~-----------~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVl 324 (666)
T 3o8b_A 256 QGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT-----------ITTGAPVTYSTYGKFLADGGCSGGAYDIIIC 324 (666)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-----------ECCCCSEEEEEHHHHHHTTSCCTTSCSEEEE
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe-----------ccCCCCEEEECcHHHHhCCCcccCcccEEEE
Confidence 456999999999999999988864 455666677643 345689999997 2334567778888886
Q ss_pred ecC
Q 012133 139 YEL 141 (470)
Q Consensus 139 ~~~ 141 (470)
-+.
T Consensus 325 DEA 327 (666)
T 3o8b_A 325 DEC 327 (666)
T ss_dssp TTT
T ss_pred ccc
Confidence 444
No 172
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=50.62 E-value=19 Score=28.69 Aligned_cols=43 Identities=12% Similarity=0.130 Sum_probs=31.6
Q ss_pred HHHHcCC-CeEEEEe-CchHHHHHHHHHHhc-CCcEEEEeCCCCHH
Q 012133 59 ITVYAKG-GKTIVFT-QTKRDADEVSLALTS-IIASEALHGDISQH 101 (470)
Q Consensus 59 l~~~~~~-~~~lVF~-~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~ 101 (470)
+..+.+. .++|||| .+-..+..++..|.. ++.+..|.|++..-
T Consensus 82 ~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~W 127 (134)
T 3g5j_A 82 AAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKAY 127 (134)
T ss_dssp HHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHHH
T ss_pred HHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHHH
Confidence 3334456 7999999 576677788888874 67899999987543
No 173
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=50.56 E-value=44 Score=29.94 Aligned_cols=60 Identities=17% Similarity=0.076 Sum_probs=42.1
Q ss_pred cccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCc-EEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 48 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 48 ~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
..-|..+...++... ..++||+++++..+.++++.+.+ .+. +..++++.. ...+|+|+|.
T Consensus 118 G~GKT~~a~~~~~~~--~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~ 179 (237)
T 2fz4_A 118 GSGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (237)
T ss_dssp STTHHHHHHHHHHHS--CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEH
T ss_pred CCCHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeH
Confidence 345655544444433 57999999999999999998876 445 777887753 1457888884
No 174
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=50.13 E-value=15 Score=39.19 Aligned_cols=85 Identities=18% Similarity=0.286 Sum_probs=56.6
Q ss_pred CcccHHHHHH-HHHHHH-cCCCeEEEEeCchHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEe
Q 012133 47 TATSKRTILS-DLITVY-AKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVA 120 (470)
Q Consensus 47 ~~~~k~~~l~-~ll~~~-~~~~~~lVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVa 120 (470)
...-|..... .+++.. ..+.++||.+|++..+.+.++.++. ++.+..++|+....++ .+ ...+|+|+
T Consensus 55 TGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-----~~--~~~~Iiv~ 127 (715)
T 2va8_A 55 TGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA-----WL--KNYDIIIT 127 (715)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCG-----GG--GGCSEEEE
T ss_pred CCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchh-----hc--CCCCEEEE
Confidence 3446654443 233333 2568999999999999999998852 5788999998765442 12 26789999
Q ss_pred cc-----cccccCC-CCCccEEEE
Q 012133 121 TD-----VAARGLD-IPNVDLIIH 138 (470)
Q Consensus 121 Td-----v~~~Gid-ip~v~~VI~ 138 (470)
|+ .+..... +.++++||.
T Consensus 128 Tpe~l~~~~~~~~~~l~~~~~vIi 151 (715)
T 2va8_A 128 TYEKLDSLWRHRPEWLNEVNYFVL 151 (715)
T ss_dssp CHHHHHHHHHHCCGGGGGEEEEEE
T ss_pred cHHHHHHHHhCChhHhhccCEEEE
Confidence 97 2223333 567788874
No 175
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=49.30 E-value=16 Score=40.90 Aligned_cols=68 Identities=19% Similarity=0.175 Sum_probs=48.8
Q ss_pred HHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc-----ccccc-CCCCC
Q 012133 60 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPN 132 (470)
Q Consensus 60 ~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-----v~~~G-idip~ 132 (470)
..+....++||.+|++..+.+.++.|.+ .-.+..++|+.+.. ....|+|+|. .+.++ ..+.+
T Consensus 124 ~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~~-----------~~~~IvV~Tpe~L~~~L~~~~~~l~~ 192 (1010)
T 2xgj_A 124 QSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITIN-----------PDAGCLVMTTEILRSMLYRGSEVMRE 192 (1010)
T ss_dssp HHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEEC-----------TTCSEEEEEHHHHHHHHHHTCTTGGG
T ss_pred HHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCccC-----------CCCCEEEEcHHHHHHHHHcCcchhhc
Confidence 3344668999999999999999998875 23688899987532 2467999996 22233 45567
Q ss_pred ccEEEE
Q 012133 133 VDLIIH 138 (470)
Q Consensus 133 v~~VI~ 138 (470)
+.+||.
T Consensus 193 l~lVVi 198 (1010)
T 2xgj_A 193 VAWVIF 198 (1010)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 777773
No 176
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=48.77 E-value=83 Score=23.62 Aligned_cols=68 Identities=12% Similarity=0.109 Sum_probs=38.7
Q ss_pred eEEEEEeeCCccccCCcchhhHHhHhhhhcCcCcCccccEEEeecCccceeEeec-CHHHHHHHHhhcCC---CCCeEEE
Q 012133 263 WVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDL-PEEIAKELLNKQIP---PGNTISK 338 (470)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~Ig~I~i~~~~~~~ga~fdv-~~~~a~~i~~~~~~---~g~~i~~ 338 (470)
..+|+|..- ...++..+|..++..+.. |-.+.+..++ +|++. ..+.|++.++.... .+..|.+
T Consensus 11 ~~~l~V~nl----~~~~t~~~l~~~F~~~G~-----i~~v~~~~~~----afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (103)
T 2dgu_A 11 VKVLFVRNL----ANTVTEEILEKAFSQFGK-----LERVKKLKDY----AFIHFDERDGAVKAMEEMNGKDLEGENIEI 77 (103)
T ss_dssp CCCEEEECC----CTTCCHHHHHHHHHHHSC-----EEEEEECSSC----EEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCEEEEeCC----CCCCCHHHHHHHHHhcCC-----EEEEEEECCE----EEEEeCCHHHHHHHHHHHCCCccCCCEEEE
Confidence 456777433 234788888888876654 5566676654 56666 44555666653222 3445554
Q ss_pred eccCC
Q 012133 339 ITKLP 343 (470)
Q Consensus 339 ~~~lP 343 (470)
--..|
T Consensus 78 ~~a~~ 82 (103)
T 2dgu_A 78 VFAKP 82 (103)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 43333
No 177
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=48.33 E-value=22 Score=34.28 Aligned_cols=85 Identities=8% Similarity=0.045 Sum_probs=52.7
Q ss_pred CcccHHHH-HHHHHHHHc---CCCeEEEEeCchHHHHHHHHHHhc------CCcEEEEeCCCCHHHHHHHHcccccCCee
Q 012133 47 TATSKRTI-LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFT 116 (470)
Q Consensus 47 ~~~~k~~~-l~~ll~~~~---~~~~~lVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~f~~g~~~ 116 (470)
...-|..+ +..++..+. ...++||.+||++.+.++++.+.+ .+.+..++++..... ......+
T Consensus 73 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 145 (412)
T 3fht_A 73 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQ 145 (412)
T ss_dssp TTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT-------TCCCCCS
T ss_pred CCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh-------hhcCCCC
Confidence 33456543 333444432 234899999999999999877763 355666776643221 1233568
Q ss_pred EEEeccccc-------ccCCCCCccEEEE
Q 012133 117 VLVATDVAA-------RGLDIPNVDLIIH 138 (470)
Q Consensus 117 iLVaTdv~~-------~Gidip~v~~VI~ 138 (470)
|+|+|.-.- ..+++.++++||.
T Consensus 146 ivv~T~~~l~~~~~~~~~~~~~~~~~iVi 174 (412)
T 3fht_A 146 IVIGTPGTVLDWCSKLKFIDPKKIKVFVL 174 (412)
T ss_dssp EEEECHHHHHHHHTTSCSSCGGGCCEEEE
T ss_pred EEEECchHHHHHHHhcCCcChhhCcEEEE
Confidence 999996221 3456677888774
No 178
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=46.26 E-value=20 Score=27.69 Aligned_cols=42 Identities=14% Similarity=0.183 Sum_probs=32.2
Q ss_pred HHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCc-EEEEeCCCCH
Q 012133 59 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQ 100 (470)
Q Consensus 59 l~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~~ 100 (470)
...+.+..++||||.+-..+...+..|.. ++. +..|.|++..
T Consensus 46 ~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 89 (106)
T 3hix_A 46 SSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 89 (106)
T ss_dssp HHHSCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHH
T ss_pred HhcCCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHH
Confidence 34455678899999998888888888874 664 8888888643
No 179
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=45.71 E-value=28 Score=34.72 Aligned_cols=75 Identities=17% Similarity=0.111 Sum_probs=50.1
Q ss_pred ccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CCc-EEEEeCCCCHHHHHHHHcccccCCeeEEEecc-ccc
Q 012133 49 TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQHQRERTLNGFRQGKFTVLVATD-VAA 125 (470)
Q Consensus 49 ~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd-v~~ 125 (470)
.-|..+...++... ..++||.||++..+.+.++.+.+ .+. +..+||+... ..+|+|+|. .+.
T Consensus 119 sGKT~~~l~~i~~~--~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~~~l~ 183 (472)
T 2fwr_A 119 SGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTYDSAY 183 (472)
T ss_dssp SCHHHHHHHHHHHH--CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEHHHHH
T ss_pred CCHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEcHHHH
Confidence 45655444444433 57999999999999999999886 566 8889988642 357899995 222
Q ss_pred ccCC-C-CCccEEEE
Q 012133 126 RGLD-I-PNVDLIIH 138 (470)
Q Consensus 126 ~Gid-i-p~v~~VI~ 138 (470)
.-++ + ..+.+||.
T Consensus 184 ~~~~~~~~~~~liIv 198 (472)
T 2fwr_A 184 VNAEKLGNRFMLLIF 198 (472)
T ss_dssp HTHHHHTTTCSEEEE
T ss_pred HHHHHhcCCCCEEEE
Confidence 2221 1 34667663
No 180
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=43.53 E-value=6.2 Score=25.23 Aligned_cols=17 Identities=35% Similarity=0.739 Sum_probs=15.4
Q ss_pred ccccCCCCCccCCCCCC
Q 012133 454 ACFNCGKSGHRASECPN 470 (470)
Q Consensus 454 ~c~~c~~~gh~~~~c~~ 470 (470)
-|=+|--.|||..||+.
T Consensus 22 YCe~CEVFGH~t~eC~d 38 (42)
T 3e2u_E 22 YCEICEMFGHWATNCND 38 (42)
T ss_dssp EETTTTEESSCGGGCCT
T ss_pred ccccceecccccccCCc
Confidence 39999999999999974
No 181
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=43.05 E-value=1.2e+02 Score=30.62 Aligned_cols=110 Identities=12% Similarity=0.079 Sum_probs=73.3
Q ss_pred EEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhcCC--cEEEEeC-------CCC-----HHHHHHH
Q 012133 41 LYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII--ASEALHG-------DIS-----QHQRERT 106 (470)
Q Consensus 41 ~~~~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~~--~~~~lhg-------~~~-----~~~R~~~ 106 (470)
+...-+....|.-++..+++.. +.++||.|++...|.+|+..|...+ .|..+-. ..+ ..+|..+
T Consensus 17 ~~l~g~~gs~ka~~~a~l~~~~--~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~~ 94 (483)
T 3hjh_A 17 RLLGELTGAACATLVAEIAERH--AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLST 94 (483)
T ss_dssp EEEECCCTTHHHHHHHHHHHHS--SSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHH
T ss_pred EEEeCCCchHHHHHHHHHHHHh--CCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHHH
Confidence 3444566677877777777653 4689999999999999999997532 2333322 111 2468889
Q ss_pred HcccccCCeeEEEecccccccCCCCC-----ccEEEEecCCCChhHHHHHh
Q 012133 107 LNGFRQGKFTVLVATDVAARGLDIPN-----VDLIIHYELPNDPETFVHRS 152 (470)
Q Consensus 107 ~~~f~~g~~~iLVaTdv~~~Gidip~-----v~~VI~~~~p~~~~~y~qr~ 152 (470)
+..+.+++..|||+|--+....=.|. -.+.+..+-..+.+.+.++.
T Consensus 95 l~~L~~~~~~ivv~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~L 145 (483)
T 3hjh_A 95 LYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQL 145 (483)
T ss_dssp HHHGGGCCSSEEEEEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHHH
T ss_pred HHHHHhCCCCEEEEEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHHH
Confidence 99888877788888854444433332 24566666667888877664
No 182
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=42.02 E-value=15 Score=29.70 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=32.4
Q ss_pred HHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CC-cEEEEeCCCCH
Q 012133 57 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDISQ 100 (470)
Q Consensus 57 ~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~~~ 100 (470)
.++..+.++.++||||.+-..+..++..|.. ++ .+..|.|++..
T Consensus 74 ~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 119 (129)
T 1tq1_A 74 QVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSA 119 (129)
T ss_dssp HHTTTCCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHH
T ss_pred HHHhhCCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 3333344667999999997778888888875 66 48889999754
No 183
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=41.00 E-value=9.2 Score=29.27 Aligned_cols=38 Identities=8% Similarity=0.177 Sum_probs=30.9
Q ss_pred HcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCC
Q 012133 62 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 99 (470)
Q Consensus 62 ~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~ 99 (470)
+.++.+++|||.+-..+...+..|.. ++.+..|.|++.
T Consensus 53 l~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 53 FNDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp SCTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 45668999999998888888998885 678888888753
No 184
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=40.83 E-value=25 Score=28.47 Aligned_cols=37 Identities=5% Similarity=0.063 Sum_probs=28.8
Q ss_pred cCCCeEEEEeCchHHHHHHHHHHhc-CCc-EEEEeCCCC
Q 012133 63 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 99 (470)
Q Consensus 63 ~~~~~~lVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~ 99 (470)
.++.++||||.+=..+...+..|.. ++. +..|.|++.
T Consensus 72 ~~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 72 PENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 3567999999997777777887774 674 888889874
No 185
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=40.80 E-value=28 Score=32.03 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=36.4
Q ss_pred CCeEEEEeCchHHHHHHHHHHhcC-----CcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 65 GGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
..++||.++|+..+++.++.+.+. ..+..++++.+..+ -......|+|+|.
T Consensus 157 ~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~ 212 (282)
T 1rif_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDAPVVVGTW 212 (282)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTCSEEEECH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCCcEEEEch
Confidence 359999999999999999888752 24667777654322 1124578999996
No 186
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=40.73 E-value=1.1e+02 Score=32.07 Aligned_cols=107 Identities=18% Similarity=0.257 Sum_probs=68.5
Q ss_pred EEcCcccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhcCC---cEEEEe--------------------CCC--
Q 012133 44 ISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII---ASEALH--------------------GDI-- 98 (470)
Q Consensus 44 ~~~~~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~~~---~~~~lh--------------------g~~-- 98 (470)
.-+....|.-++..++... +.++||.++++..|.+|+..|...+ .|..+- -..
T Consensus 38 ~g~~gs~k~~~~a~~~~~~--~~~~lvv~~~~~~A~~l~~el~~~~~~~~v~~fps~yd~~~pe~~~~~~d~y~~~~~~~ 115 (661)
T 2d7d_A 38 LGATGTGKTFTVSNLIKEV--NKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASI 115 (661)
T ss_dssp EECTTSCHHHHHHHHHHHH--CCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECCCEEEEECCEEETTTTEEECCEEEE
T ss_pred ECcCCcHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHHcCCCcEEEccccccccCccccCCcchhhhhhhccc
Confidence 3456678887777777654 3589999999999999999998532 233322 111
Q ss_pred C---HHHHHHHHcccccCCeeEEEecccccccCCCCC----ccEEEEecCCCChhHHHHHh
Q 012133 99 S---QHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----VDLIIHYELPNDPETFVHRS 152 (470)
Q Consensus 99 ~---~~~R~~~~~~f~~g~~~iLVaTdv~~~Gidip~----v~~VI~~~~p~~~~~y~qr~ 152 (470)
+ ..+|..++..+.+.+-.|||+|--+..++=.|. ..+.+..+-..+.+.++++.
T Consensus 116 ~~~i~~~Rl~~l~~L~~~~~~ivV~sv~al~~l~~~~~~~~~~~~l~~G~~~~~~~l~~~L 176 (661)
T 2d7d_A 116 NDEIDKLRHSATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKL 176 (661)
T ss_dssp CHHHHHHHHHHHHHHHHCSCEEEEECGGGGSCBCCHHHHHHHCEEEETTCBCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCeEEEecHHHHcCCCCHHHHHhccEEEeCCCEeCHHHHHHHH
Confidence 1 567889998887666568888755445543322 12344445555666665543
No 187
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=38.46 E-value=22 Score=29.19 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=30.3
Q ss_pred HcCCCeEEEEeCchHHHHHHHHHHhc-CCc-EEEEeCCCCH
Q 012133 62 YAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQ 100 (470)
Q Consensus 62 ~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~~ 100 (470)
+.+..++||||.+-..+..++..|.. ++. +..|.|++..
T Consensus 53 l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~ 93 (141)
T 3ilm_A 53 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 93 (141)
T ss_dssp SCTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHHH
T ss_pred CCCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHHH
Confidence 44567899999998888888888874 664 8888888643
No 188
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=38.44 E-value=8.8 Score=29.87 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=30.7
Q ss_pred HHHcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCC
Q 012133 60 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 98 (470)
Q Consensus 60 ~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~ 98 (470)
..+.++.+++|+|.+-..+...+..|.+ ++.+..|.|++
T Consensus 51 ~~l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 51 NSFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp GGCCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred hhhcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 3345678999999988888888888875 78887787875
No 189
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=37.74 E-value=49 Score=33.48 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=39.9
Q ss_pred CCeEEEEeCchHHHHHHHHHHhcC-----CcEEEEeCCCCHHHHHHHHcccccCCeeEEEecccc------cccCCCCCc
Q 012133 65 GGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNV 133 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~------~~Gidip~v 133 (470)
..++||.++++..+.++++.+.+. +.+....++..... .....+|+|+|.-. ...+++.++
T Consensus 189 ~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~ 260 (508)
T 3fho_A 189 KPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG--------AKIDAQIVIGTPGTVMDLMKRRQLDARDI 260 (508)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC------------------CCCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc--------ccCCCCEEEECHHHHHHHHHcCCccccCC
Confidence 348999999999999999988752 22333333221111 11257899999532 234577888
Q ss_pred cEEEE
Q 012133 134 DLIIH 138 (470)
Q Consensus 134 ~~VI~ 138 (470)
++||.
T Consensus 261 ~lIIi 265 (508)
T 3fho_A 261 KVFVL 265 (508)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88884
No 190
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=35.41 E-value=1.2e+02 Score=26.24 Aligned_cols=124 Identities=10% Similarity=0.126 Sum_probs=72.5
Q ss_pred CCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc----cccccCCCCCccEEEEe
Q 012133 65 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD----VAARGLDIPNVDLIIHY 139 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd----v~~~Gidip~v~~VI~~ 139 (470)
..+++++++.....+.+.+.+.+ ...+.++.+.+.... ...+.. +...+|+|+-- .+..-+++| ||
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v--~~a~~~-~~~~dVIISRGgta~~lr~~~~iP----VV-- 74 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRAS--KIAFGL-QDEVDAIISRGATSDYIKKSVSIP----SI-- 74 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHH--HHHHHH-TTTCSEEEEEHHHHHHHHTTCSSC----EE--
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHH--HHHHHh-cCCCeEEEECChHHHHHHHhCCCC----EE--
Confidence 35788888887776655554443 446667777765443 223333 45678888763 445556665 22
Q ss_pred cCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCccccCCCCHHHHH
Q 012133 140 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 199 (470)
Q Consensus 140 ~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~ 199 (470)
++|.+..++++-+-++-+.+. -.+++-+. .-...++.+.+.++.++......+.+++.
T Consensus 75 ~I~~s~~Dil~al~~a~~~~~-kIavvg~~-~~~~~~~~~~~ll~~~i~~~~~~~~~e~~ 132 (196)
T 2q5c_A 75 SIKVTRFDTMRAVYNAKRFGN-ELALIAYK-HSIVDKHEIEAMLGVKIKEFLFSSEDEIT 132 (196)
T ss_dssp EECCCHHHHHHHHHHHGGGCS-EEEEEEES-SCSSCHHHHHHHHTCEEEEEEECSGGGHH
T ss_pred EEcCCHhHHHHHHHHHHhhCC-cEEEEeCc-chhhHHHHHHHHhCCceEEEEeCCHHHHH
Confidence 345666677666655544332 23344333 22344677888888888877666666553
No 191
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=35.01 E-value=25 Score=26.77 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=30.6
Q ss_pred HcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCC
Q 012133 62 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 99 (470)
Q Consensus 62 ~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~ 99 (470)
+.++.++||||.+-..+...+..|.. ++.+..|.|++.
T Consensus 53 l~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 35667999999998888888888875 678888888853
No 192
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=34.99 E-value=37 Score=25.31 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=29.2
Q ss_pred cCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCC
Q 012133 63 AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 99 (470)
Q Consensus 63 ~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~ 99 (470)
.+ .+++|||.+-..+...+..|.. ++.+..|.|++.
T Consensus 52 ~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 52 PR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp CS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 45 8899999998888888888875 677888888864
No 193
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=34.96 E-value=2.4e+02 Score=25.03 Aligned_cols=125 Identities=8% Similarity=0.074 Sum_probs=73.6
Q ss_pred CeEEEEeCchHHHHHHHHHHhc-C--CcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc----cccccCCCCCccEEEE
Q 012133 66 GKTIVFTQTKRDADEVSLALTS-I--IASEALHGDISQHQRERTLNGFRQGKFTVLVATD----VAARGLDIPNVDLIIH 138 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~-~--~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd----v~~~Gidip~v~~VI~ 138 (470)
.++++.++.....+.+.+.+.+ . ..+..+.+.+...... +.+....+..+|+||-- .+..-+++| ||
T Consensus 13 ~~ii~i~~~~~L~~~~~~i~~e~~~~~~I~vi~~~le~av~~-a~~~~~~~~~dVIISRGgta~~Lr~~~~iP----VV- 86 (225)
T 2pju_A 13 KPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTY-IRKKLANERCDAIIAAGSNGAYLKSRLSVP----VI- 86 (225)
T ss_dssp CCEEEEECCHHHHHHHHHHHTTTTTTCEEEEECCCHHHHHHH-HHHHTTTSCCSEEEEEHHHHHHHHTTCSSC----EE-
T ss_pred CCEEEEEchHHHHHHHHHHHHhhCCCceEEEecCcHHHHHHH-HHHHHhcCCCeEEEeCChHHHHHHhhCCCC----EE-
Confidence 4667777776666544444433 1 4466666776443322 22223444578998763 445556665 23
Q ss_pred ecCCCChhHHHHHhcccCCCCCCCeEEEeeChhhHHHHHHHHHHhCCCccccCCCCHHHHH
Q 012133 139 YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 199 (470)
Q Consensus 139 ~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~ 199 (470)
+++.+..++++-+-++-+.+. -.+++-+. .....++.+.+.++.++......+.+++.
T Consensus 87 -~I~vs~~Dil~aL~~a~~~~~-kIavVg~~-~~~~~~~~i~~ll~~~i~~~~~~~~ee~~ 144 (225)
T 2pju_A 87 -LIKPSGYDVLQFLAKAGKLTS-SIGVVTYQ-ETIPALVAFQKTFNLRLDQRSYITEEDAR 144 (225)
T ss_dssp -EECCCHHHHHHHHHHTTCTTS-CEEEEEES-SCCHHHHHHHHHHTCCEEEEEESSHHHHH
T ss_pred -EecCCHHHHHHHHHHHHhhCC-cEEEEeCc-hhhhHHHHHHHHhCCceEEEEeCCHHHHH
Confidence 345677788877777655532 34444443 33456788899999998887777666553
No 194
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=33.85 E-value=1.1e+02 Score=22.21 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=32.8
Q ss_pred cceEEEEEEcCcccHHHHHHHHHHHHc----CCCeEEEEeCchHHHHHHHHHHhc
Q 012133 37 EGIKLYAISTTATSKRTILSDLITVYA----KGGKTIVFTQTKRDADEVSLALTS 87 (470)
Q Consensus 37 ~~i~~~~~~~~~~~k~~~l~~ll~~~~----~~~~~lVF~~t~~~~~~l~~~l~~ 87 (470)
.+..+.|-....+.-..+|..+++.+. +.-++-|-..|+++++.++..|.+
T Consensus 15 knfdytytvtteselqkvlnelmdyikkqgakrvrisitartkkeaekfaailik 69 (106)
T 1qys_A 15 KNFDYTYTVTTESELQKVLNELMDYIKKQGAKRVRISITARTKKEAEKFAAILIK 69 (106)
T ss_dssp CEEEEEEEESSSSHHHHHHHHHHHHHHHHCCSEEEEEEECSSHHHHHHHHHHHHH
T ss_pred cccceEEEEeeHHHHHHHHHHHHHHHHhcCCcEEEEEEEecchhHHHHHHHHHHH
Confidence 456666666555555555555554332 223677888999999999888753
No 195
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=31.57 E-value=75 Score=24.42 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=29.8
Q ss_pred HcCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCC
Q 012133 62 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 99 (470)
Q Consensus 62 ~~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~ 99 (470)
..+..++||||.+-..+..++..|.. ++....|.|++.
T Consensus 53 ~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 53 QHKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred cCCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 34668999999998888888888874 664478889864
No 196
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=31.25 E-value=97 Score=24.76 Aligned_cols=54 Identities=17% Similarity=0.336 Sum_probs=39.0
Q ss_pred eEEEEeCchHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 67 KTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 67 ~~lVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
+.+|.|..+.+...|.+.+.-...+...+|.++++....+.+..+ ...|+|-||
T Consensus 5 ~~vIVVEGk~D~~~L~~~~~~~~~iI~t~Gsi~~~~l~~I~~~~~--~r~VIi~TD 58 (119)
T 2fcj_A 5 EKVIIVEGRSDKQKVAAVLNEPVVIVCTNGTISDARLEELADELE--GYDVYLLAD 58 (119)
T ss_dssp CEEEEESSHHHHHHHHHHBSSCCEEEECCSCCCHHHHHHHHHHTT--TSEEEEECC
T ss_pred CeEEEEechHHHHHHHHhcCCCCCEEEeCCccCHHHHHHHHHHhc--CCCEEEEEC
Confidence 568889999999988877533456788889888876666655543 456777776
No 197
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=30.07 E-value=98 Score=33.33 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=39.7
Q ss_pred HHcCCCeEEEEeCchHHHHHHHHHHhc---CCcEEEEeCCCCHHHHHHHHccc--------ccCCeeEEEecc
Q 012133 61 VYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGF--------RQGKFTVLVATD 122 (470)
Q Consensus 61 ~~~~~~~~lVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~R~~~~~~f--------~~g~~~iLVaTd 122 (470)
.....+++||.|| ...+.+....+.+ .+.+..+||.............+ ......|+|+|-
T Consensus 282 ~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy 353 (800)
T 3mwy_W 282 ARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTY 353 (800)
T ss_dssp HHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECT
T ss_pred hcCCCCCEEEEEC-chHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecH
Confidence 3345678999999 5566666666664 46788899986554443333322 224567999884
No 198
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=29.85 E-value=96 Score=25.81 Aligned_cols=77 Identities=14% Similarity=0.240 Sum_probs=48.1
Q ss_pred HHHHHHHHHH-HHcCCCeEEEEeCchHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEeccccc
Q 012133 51 KRTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 125 (470)
Q Consensus 51 k~~~l~~ll~-~~~~~~~~lVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTdv~~ 125 (470)
+.....+|+. .+..+.+++|.|.+.+.++.|-+.|=. .|-...+.++-+. ....|+|+++-..
T Consensus 24 ~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~~~------------~~~PV~L~~~~~~ 91 (150)
T 3sxu_A 24 VEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPR------------GGAPVEIAWPQKR 91 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCSST------------TCCSEEEECTTSC
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCCCC------------CCCCEEEeCCCCC
Confidence 5666666764 456778999999999999999888732 2222233333211 2457999875321
Q ss_pred ccCCCCCccEEEEecCC
Q 012133 126 RGLDIPNVDLIIHYELP 142 (470)
Q Consensus 126 ~Gidip~v~~VI~~~~p 142 (470)
.-+.-+++||.+.-
T Consensus 92 ---~~~~~~vLinL~~~ 105 (150)
T 3sxu_A 92 ---SSSRRDILISLRTS 105 (150)
T ss_dssp ---CCSCCSEEEECCSS
T ss_pred ---CCCcCCEEEECCCC
Confidence 12235689987743
No 199
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=28.48 E-value=59 Score=30.48 Aligned_cols=35 Identities=9% Similarity=0.196 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc
Q 012133 52 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 87 (470)
Q Consensus 52 ~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~ 87 (470)
+....++|..+.. +.-|+|+.|+..+..+...+..
T Consensus 62 L~~Aa~~I~~i~~-~~~ILfVgTk~~aq~aV~k~A~ 96 (305)
T 3iz6_A 62 LQLAARVIVAIEN-PQDIIVQSARPYGQRAVLKFAQ 96 (305)
T ss_dssp HHHHHHHHHHTTS-SCCEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCeEEEEeCcHHHHHHHHHHHH
Confidence 3333344544533 4456788999888877666553
No 200
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=28.17 E-value=68 Score=26.20 Aligned_cols=37 Identities=8% Similarity=0.013 Sum_probs=27.6
Q ss_pred cCCCeEEEEeCchHHHHHHHHHHhc-CC-cEEEEeCCCC
Q 012133 63 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 99 (470)
Q Consensus 63 ~~~~~~lVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~~ 99 (470)
.++.++||||.+-..+..++..|.. ++ .+..|.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 4567899999987777788888874 67 5889989874
No 201
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=26.61 E-value=36 Score=30.76 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=18.6
Q ss_pred HHHHHcCCCeEEEEeCchHHHHHHHHHHh
Q 012133 58 LITVYAKGGKTIVFTQTKRDADEVSLALT 86 (470)
Q Consensus 58 ll~~~~~~~~~lVF~~t~~~~~~l~~~l~ 86 (470)
++......+..|.|+.|+..+..+.....
T Consensus 56 ~i~~~~~~~~~iLfVgTk~~~~~~V~~~A 84 (231)
T 3bbn_B 56 LVFDASSRGKQFLIVGTKNKAADSVARAA 84 (231)
T ss_dssp HSHHHHTTTCCEEEECCCTTTHHHHHHHH
T ss_pred HHHHHHhCCCEEEEEeCcHHHHHHHHHHH
Confidence 33333355677888888887766655544
No 202
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=26.40 E-value=1.4e+02 Score=26.16 Aligned_cols=78 Identities=6% Similarity=-0.029 Sum_probs=47.7
Q ss_pred EEEEcCc-ccHHHHHHHHHHHHc--CCCeEEEEeCchHHHHHHHHHHhcCCcE--EEEeCC--------CCHHHHHHHHc
Q 012133 42 YAISTTA-TSKRTILSDLITVYA--KGGKTIVFTQTKRDADEVSLALTSIIAS--EALHGD--------ISQHQRERTLN 108 (470)
Q Consensus 42 ~~~~~~~-~~k~~~l~~ll~~~~--~~~~~lVF~~t~~~~~~l~~~l~~~~~~--~~lhg~--------~~~~~R~~~~~ 108 (470)
+|+..+. ++-.+.|...++... .-.+++|...+=+.+..+++.+ .++.+ ..+|-+ |+++.|++..+
T Consensus 18 ~YF~~~G~eNT~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~-~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~ 96 (201)
T 1vp8_A 18 VYFNKPGRENTEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA-EGLEVVVVTYHTGFVREGENTMPPEVEEELRK 96 (201)
T ss_dssp EEESSCSGGGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC-TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHH
T ss_pred EEecCCCcccHHHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHh-cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHh
Confidence 4444443 344444444443321 2468999999999999888877 44443 344443 66666665544
Q ss_pred ccccCCeeEEEecccc
Q 012133 109 GFRQGKFTVLVATDVA 124 (470)
Q Consensus 109 ~f~~g~~~iLVaTdv~ 124 (470)
. ..+|+-+|-++
T Consensus 97 ~----G~~V~t~tH~l 108 (201)
T 1vp8_A 97 R----GAKIVRQSHIL 108 (201)
T ss_dssp T----TCEEEECCCTT
T ss_pred C----CCEEEEEeccc
Confidence 4 78888888664
No 203
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=25.91 E-value=73 Score=27.94 Aligned_cols=79 Identities=13% Similarity=0.095 Sum_probs=46.9
Q ss_pred EEEEcCcc-cHHHHHHHHHHHHc--CCCeEEEEeCchHHHHHHHHHHhcCCcEEEEeC--------CCCHHHHHHHHccc
Q 012133 42 YAISTTAT-SKRTILSDLITVYA--KGGKTIVFTQTKRDADEVSLALTSIIASEALHG--------DISQHQRERTLNGF 110 (470)
Q Consensus 42 ~~~~~~~~-~k~~~l~~ll~~~~--~~~~~lVF~~t~~~~~~l~~~l~~~~~~~~lhg--------~~~~~~R~~~~~~f 110 (470)
+|+..+-. +-.+.|...++... .-++++|...+=+.+..+++.+...+-++.+|- .|+++.|++..+.
T Consensus 26 ~YF~~~G~eNT~~tl~la~era~e~~Ik~iVVASssG~TA~k~~e~~~~~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~- 104 (206)
T 1t57_A 26 CYFEEPGKENTERVLELVGERADQLGIRNFVVASVSGETALRLSEMVEGNIVSVTHHAGFREKGQLELEDEARDALLER- 104 (206)
T ss_dssp EEESSCSGGGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHTTCCSEEEEECCCTTSSSTTCCSSCHHHHHHHHHH-
T ss_pred EEecCCCcccHHHHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHccCCEEEEeCcCCCCCCCCCcCCHHHHHHHHhC-
Confidence 45544443 44444444443321 236889999998888888886632222333343 3677776665554
Q ss_pred ccCCeeEEEecccc
Q 012133 111 RQGKFTVLVATDVA 124 (470)
Q Consensus 111 ~~g~~~iLVaTdv~ 124 (470)
.++|+-+|-++
T Consensus 105 ---G~~V~t~tH~l 115 (206)
T 1t57_A 105 ---GVNVYAGSHAL 115 (206)
T ss_dssp ---TCEEECCSCTT
T ss_pred ---CCEEEEeeccc
Confidence 67888887664
No 204
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=25.26 E-value=55 Score=26.29 Aligned_cols=38 Identities=5% Similarity=0.073 Sum_probs=30.3
Q ss_pred cCCCeEEEEeCchHHHHHHHHHHhc-CCc-EEEEeCCCCH
Q 012133 63 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQ 100 (470)
Q Consensus 63 ~~~~~~lVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~~ 100 (470)
.++.++||||.+-..+..++..|.. ++. +..|.|++..
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 123 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGA 123 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHHH
Confidence 4567999999998888888888874 664 8899998643
No 205
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=25.21 E-value=2.2e+02 Score=21.45 Aligned_cols=60 Identities=15% Similarity=0.085 Sum_probs=44.1
Q ss_pred cCCCeEEEEeCchHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHcccccCCeeEEEecc
Q 012133 63 AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 63 ~~~~~~lVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
..-.++||..+.+....++.+.+.+ ++.+..+--+.+..+-++.-.+..+....|--.||
T Consensus 49 knfekiliisndkqllkemlelisklgykvflllqdqdeneleefkrkiesqgyevrkvtd 109 (134)
T 2lci_A 49 KNFEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQDENELEEFKRKIESQGYEVRKVTD 109 (134)
T ss_dssp CSCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCHHHHHHHHHHHHTTTCEEEEECC
T ss_pred cCcceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCchhHHHHHHHHHHhCCeeeeecCC
Confidence 3457999999999998888888886 89999888887776655555555555555555554
No 206
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=24.99 E-value=2.8e+02 Score=23.29 Aligned_cols=42 Identities=10% Similarity=-0.026 Sum_probs=32.6
Q ss_pred cccHHHHHHHHHHHHcCCCeEEEEeCchHHHHHHHHHHhc-CC
Q 012133 48 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II 89 (470)
Q Consensus 48 ~~~k~~~l~~ll~~~~~~~~~lVF~~t~~~~~~l~~~l~~-~~ 89 (470)
......++..+.+.+.+++.+++.+.+....+.+.+.|.+ ++
T Consensus 118 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 118 GGMLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY 160 (204)
T ss_dssp TTCHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred CcCHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC
Confidence 3456677777778888888888888888888888888874 44
No 207
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=23.32 E-value=58 Score=26.65 Aligned_cols=39 Identities=15% Similarity=0.154 Sum_probs=30.3
Q ss_pred HcCCCeEEEEeCch--HHHHHHHHHHhc-CCcEEEEeCCCCH
Q 012133 62 YAKGGKTIVFTQTK--RDADEVSLALTS-IIASEALHGDISQ 100 (470)
Q Consensus 62 ~~~~~~~lVF~~t~--~~~~~l~~~l~~-~~~~~~lhg~~~~ 100 (470)
+.++.++||||.+- ..+..++..|.. ++.+..|.|++..
T Consensus 69 l~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~~ 110 (144)
T 3nhv_A 69 LSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEY 110 (144)
T ss_dssp CCTTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHHH
T ss_pred CCCCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHHH
Confidence 34567999999987 467778888874 7889999999754
No 208
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=22.13 E-value=69 Score=29.29 Aligned_cols=51 Identities=10% Similarity=0.205 Sum_probs=28.1
Q ss_pred CeEEEEeCchHHHHHHHHHHhcCCcEEEEe----CC-CCHHHHHHHHcccccCCeeEEEecc
Q 012133 66 GKTIVFTQTKRDADEVSLALTSIIASEALH----GD-ISQHQRERTLNGFRQGKFTVLVATD 122 (470)
Q Consensus 66 ~~~lVF~~t~~~~~~l~~~l~~~~~~~~lh----g~-~~~~~R~~~~~~f~~g~~~iLVaTd 122 (470)
+.-|+|+.|+..+..+...+.....+.++. ++ ++.... .+|+ ..++||.||
T Consensus 70 ~~~vlfVgTk~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t----~~f~--~PdllvV~D 125 (252)
T 3u5c_A 70 PEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYIT----RSFK--EPRLVIVTD 125 (252)
T ss_dssp GGGEEEEECSHHHHHHHHHHHHHSSCEEEESCCCTTSSSCTTS----TTCC--CCSEEEESC
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHhCCceecCcccCCcccChhh----hhcc--CCceEEEeC
Confidence 445678889988887776665433333332 22 222211 3454 456777776
No 209
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=21.55 E-value=1.5e+02 Score=27.50 Aligned_cols=52 Identities=15% Similarity=0.134 Sum_probs=39.4
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhcCCc-EEEEeCCCCHHHHHHHHcccccCCe
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTSIIA-SEALHGDISQHQRERTLNGFRQGKF 115 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~~~~-~~~lhg~~~~~~R~~~~~~f~~g~~ 115 (470)
...-++||++.....+.+.+.++.+++ +..+..+++.++.+++.+.-++..+
T Consensus 70 ~~Dv~ii~vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi 122 (294)
T 2yv1_A 70 DANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGV 122 (294)
T ss_dssp CCCEEEECCCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEccCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 446788999998888888888888888 6667889998877777776665443
No 210
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=21.45 E-value=87 Score=29.26 Aligned_cols=51 Identities=25% Similarity=0.181 Sum_probs=38.7
Q ss_pred CCeEEEEeCchHHHHHHHHHHhcCCc-EEEEeCCCCHHHHHHHHcccccCCe
Q 012133 65 GGKTIVFTQTKRDADEVSLALTSIIA-SEALHGDISQHQRERTLNGFRQGKF 115 (470)
Q Consensus 65 ~~~~lVF~~t~~~~~~l~~~l~~~~~-~~~lhg~~~~~~R~~~~~~f~~g~~ 115 (470)
..-+|||++.....+.+.+.++.+++ +..+..+++.++.+++.+.-++..+
T Consensus 72 ~DvaIi~vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi 123 (297)
T 2yv2_A 72 INTSIVFVPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGA 123 (297)
T ss_dssp CCEEEECCCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 46788999998888888888888888 6667888998877777766665443
No 211
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=20.74 E-value=2.8e+02 Score=21.02 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=28.9
Q ss_pred CCCeEEEEeC------chHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHc
Q 012133 64 KGGKTIVFTQ------TKRDADEVSLALTS-IIASEALHGDISQHQRERTLN 108 (470)
Q Consensus 64 ~~~~~lVF~~------t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~ 108 (470)
...+++||.. +.-.|..+.+.|.. ++....+.=...+..++.+.+
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~ 67 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKE 67 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHH
Confidence 5679999987 47888888888874 555444432333444444433
No 212
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=20.57 E-value=37 Score=33.61 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=25.4
Q ss_pred cCCCeEEEEeCchHHHHHHHHHHhcCCcEEEEeCCC
Q 012133 63 AKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDI 98 (470)
Q Consensus 63 ~~~~~~lVF~~t~~~~~~l~~~l~~~~~~~~lhg~~ 98 (470)
....++||.+||+..++++++.+. ++.+..+++.+
T Consensus 29 ~~g~~~lvl~Pt~~La~Q~~~~~~-~~~v~~~~~~~ 63 (431)
T 2v6i_A 29 KKRLRTVILAPTRVVASEMYEALR-GEPIRYMTPAV 63 (431)
T ss_dssp HTTCCEEEEESSHHHHHHHHHHTT-TSCEEEC----
T ss_pred hCCCCEEEECcHHHHHHHHHHHhC-CCeEEEEecCc
Confidence 455799999999999999998886 56666666654
No 213
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=20.32 E-value=67 Score=25.95 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=30.8
Q ss_pred HcCCCeEEEEeCchHHHHHHHHHHhc-CC-cEEEEeCCCCH
Q 012133 62 YAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDISQ 100 (470)
Q Consensus 62 ~~~~~~~lVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~~~ 100 (470)
+.+..++||||.+-..+...+..|.. ++ .+..|.|++..
T Consensus 79 l~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~ 119 (137)
T 1qxn_A 79 LDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDK 119 (137)
T ss_dssp CCTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHH
T ss_pred CCCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHHH
Confidence 34668999999998778888888874 67 58889999643
No 214
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=20.15 E-value=72 Score=25.60 Aligned_cols=36 Identities=11% Similarity=0.201 Sum_probs=29.0
Q ss_pred CCCeEEEEeCchHHHHHHHHHHhc-CCc-EEEEeCCCC
Q 012133 64 KGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 99 (470)
Q Consensus 64 ~~~~~lVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~ 99 (470)
++.++||||.+-..+...+..|.. ++. +..|.|++.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 457899999998888888888885 664 888888864
Done!