Query 012135
Match_columns 470
No_of_seqs 238 out of 1439
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 23:25:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012135.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012135hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4235 Mitochondrial thymidin 100.0 6.3E-46 1.4E-50 350.0 14.4 204 226-469 27-230 (244)
2 COG1428 Deoxynucleoside kinase 100.0 3E-36 6.6E-41 288.2 19.1 203 221-443 4-212 (216)
3 cd02030 NDUO42 NADH:Ubiquinone 100.0 2.8E-30 6.1E-35 248.2 19.4 189 223-415 1-203 (219)
4 cd01673 dNK Deoxyribonucleosid 100.0 2.3E-29 5.1E-34 234.7 19.6 185 223-419 1-189 (193)
5 PF01712 dNK: Deoxynucleoside 99.9 1.6E-25 3.5E-30 203.4 11.4 141 287-435 1-143 (146)
6 COG0125 Tmk Thymidylate kinase 99.9 1.5E-24 3.2E-29 208.9 18.0 197 219-442 1-206 (208)
7 PRK07933 thymidylate kinase; V 99.9 9.4E-24 2E-28 203.0 17.7 193 222-437 1-211 (213)
8 PRK13976 thymidylate kinase; P 99.9 3.2E-23 6.8E-28 199.3 17.7 198 222-443 1-205 (209)
9 PHA03132 thymidine kinase; Pro 99.9 1E-22 2.2E-27 220.2 15.9 167 220-399 256-444 (580)
10 PLN02924 thymidylate kinase 99.9 5.4E-22 1.2E-26 192.2 19.1 192 216-442 11-206 (220)
11 KOG3877 NADH:ubiquinone oxidor 99.9 3.2E-22 7E-27 198.0 16.1 209 220-432 70-309 (393)
12 PRK13973 thymidylate kinase; P 99.9 1.5E-21 3.1E-26 187.1 18.9 198 219-442 1-209 (213)
13 PRK00698 tmk thymidylate kinas 99.9 4.7E-21 1E-25 179.0 18.4 195 219-439 1-202 (205)
14 PRK13974 thymidylate kinase; P 99.9 1.3E-20 2.9E-25 180.4 18.8 194 219-440 1-207 (212)
15 PRK13975 thymidylate kinase; P 99.8 3.1E-20 6.8E-25 173.2 17.1 188 221-442 2-193 (196)
16 TIGR00041 DTMP_kinase thymidyl 99.8 4.8E-20 1E-24 171.8 16.2 187 219-433 1-195 (195)
17 cd01672 TMPK Thymidine monopho 99.8 1.1E-19 2.4E-24 167.3 17.3 191 222-438 1-199 (200)
18 PF02223 Thymidylate_kin: Thym 99.8 1.9E-19 4.2E-24 167.3 14.9 180 226-433 1-186 (186)
19 PHA03136 thymidine kinase; Pro 99.8 3.5E-19 7.6E-24 183.9 13.5 175 220-403 35-237 (378)
20 PHA03138 thymidine kinase; Pro 99.8 7.1E-18 1.5E-22 172.2 13.7 178 218-404 9-231 (340)
21 PHA03134 thymidine kinase; Pro 99.6 5.8E-15 1.3E-19 150.8 12.4 172 220-402 12-208 (340)
22 PHA03135 thymidine kinase; Pro 99.6 3.2E-15 6.9E-20 152.9 9.3 171 220-402 9-204 (343)
23 KOG3327 Thymidylate kinase/ade 99.6 2.1E-14 4.6E-19 135.7 11.7 192 219-442 3-198 (208)
24 PF00693 Herpes_TK: Thymidine 99.4 1.5E-12 3.2E-17 130.5 11.4 160 228-399 1-187 (281)
25 PHA03133 thymidine kinase; Pro 99.4 6.3E-12 1.4E-16 129.4 13.6 170 220-400 39-236 (368)
26 PRK08233 hypothetical protein; 99.2 3.4E-10 7.3E-15 103.8 16.6 75 356-438 97-176 (182)
27 COG1936 Predicted nucleotide k 99.2 7.7E-11 1.7E-15 110.8 11.8 84 356-457 82-169 (180)
28 TIGR01359 UMP_CMP_kin_fam UMP- 99.2 5.9E-10 1.3E-14 102.9 16.5 73 356-436 103-181 (183)
29 TIGR01360 aden_kin_iso1 adenyl 99.2 1.3E-09 2.9E-14 100.4 16.1 75 356-438 106-186 (188)
30 PRK02496 adk adenylate kinase; 99.1 4E-09 8.8E-14 98.1 17.0 71 356-437 107-182 (184)
31 PRK14532 adenylate kinase; Pro 99.1 3.2E-09 7E-14 98.9 16.1 75 355-437 105-185 (188)
32 PLN02200 adenylate kinase fami 99.1 2.7E-09 5.9E-14 104.5 15.9 75 356-439 145-224 (234)
33 PRK06762 hypothetical protein; 99.0 5.1E-09 1.1E-13 95.6 14.4 69 356-438 95-163 (166)
34 PRK04040 adenylate kinase; Pro 99.0 7.6E-09 1.7E-13 98.2 15.7 76 355-437 109-187 (188)
35 PRK13808 adenylate kinase; Pro 99.0 2.3E-08 4.9E-13 103.1 18.1 76 355-439 105-193 (333)
36 PRK14531 adenylate kinase; Pro 99.0 2.6E-08 5.7E-13 93.2 15.9 71 356-436 107-181 (183)
37 PRK13949 shikimate kinase; Pro 99.0 1.4E-08 2.9E-13 94.7 13.8 72 356-435 93-167 (169)
38 PRK14527 adenylate kinase; Pro 98.9 1.6E-08 3.4E-13 95.1 14.3 72 356-436 111-189 (191)
39 PRK06217 hypothetical protein; 98.8 5.3E-08 1.2E-12 91.0 13.8 27 222-249 2-28 (183)
40 PRK00131 aroK shikimate kinase 98.8 1.1E-07 2.3E-12 86.2 14.8 75 358-442 98-173 (175)
41 TIGR03574 selen_PSTK L-seryl-t 98.8 9.8E-08 2.1E-12 93.4 15.5 74 356-439 95-169 (249)
42 PRK03839 putative kinase; Prov 98.8 9.6E-08 2.1E-12 88.6 14.1 86 356-456 79-165 (180)
43 PRK14528 adenylate kinase; Pro 98.8 9.8E-08 2.1E-12 90.0 12.5 71 356-434 107-183 (186)
44 PRK05541 adenylylsulfate kinas 98.8 1.5E-07 3.2E-12 87.0 13.5 28 219-247 5-32 (176)
45 COG0572 Udk Uridine kinase [Nu 98.8 2.4E-08 5.1E-13 97.3 8.4 51 356-407 127-182 (218)
46 PRK04182 cytidylate kinase; Pr 98.7 3.8E-07 8.2E-12 83.3 15.1 76 357-441 92-175 (180)
47 PRK00279 adk adenylate kinase; 98.7 2.2E-07 4.8E-12 89.0 14.1 27 222-249 1-27 (215)
48 PLN02842 nucleotide kinase 98.7 2.4E-07 5.1E-12 100.2 15.0 171 226-442 2-205 (505)
49 PRK14530 adenylate kinase; Pro 98.7 9E-07 2E-11 84.8 17.0 30 219-249 1-30 (215)
50 PRK13946 shikimate kinase; Pro 98.7 9.2E-07 2E-11 83.0 16.5 74 358-442 104-179 (184)
51 PRK14529 adenylate kinase; Pro 98.7 3.8E-07 8.3E-12 89.3 14.4 28 222-250 1-28 (223)
52 PRK05480 uridine/cytidine kina 98.7 1.2E-07 2.7E-12 90.0 10.2 75 356-439 125-204 (209)
53 TIGR03708 poly_P_AMP_trns poly 98.7 4.1E-07 8.8E-12 98.2 15.2 186 218-441 37-234 (493)
54 PRK14738 gmk guanylate kinase; 98.7 5.5E-07 1.2E-11 86.2 14.5 72 356-440 122-195 (206)
55 COG0703 AroK Shikimate kinase 98.7 9.6E-07 2.1E-11 83.4 15.7 71 358-439 96-168 (172)
56 PRK03731 aroL shikimate kinase 98.6 3.5E-07 7.5E-12 83.9 11.9 27 222-249 3-29 (171)
57 TIGR02173 cyt_kin_arch cytidyl 98.6 1.4E-06 3.1E-11 79.0 14.6 27 222-249 1-27 (171)
58 TIGR03707 PPK2_P_aer polyphosp 98.6 7.5E-07 1.6E-11 87.7 13.5 164 220-416 30-205 (230)
59 PTZ00301 uridine kinase; Provi 98.6 2.8E-07 6E-12 89.3 10.2 56 356-412 126-186 (210)
60 TIGR03709 PPK2_rel_1 polyphosp 98.6 1.8E-06 4E-11 86.6 16.3 191 219-451 54-256 (264)
61 PRK05057 aroK shikimate kinase 98.6 2.5E-06 5.4E-11 79.6 15.5 73 357-439 97-171 (172)
62 COG1102 Cmk Cytidylate kinase 98.5 2.9E-07 6.2E-12 86.3 8.8 28 222-250 1-28 (179)
63 PRK13947 shikimate kinase; Pro 98.5 1.1E-06 2.3E-11 80.4 12.6 69 358-435 95-163 (171)
64 PRK00625 shikimate kinase; Pro 98.5 7.9E-07 1.7E-11 83.6 11.8 27 222-249 1-27 (173)
65 PF13671 AAA_33: AAA domain; P 98.5 5.9E-07 1.3E-11 79.2 10.3 28 356-383 97-124 (143)
66 COG4088 Predicted nucleotide k 98.5 2.9E-06 6.3E-11 82.6 15.6 152 222-414 2-156 (261)
67 PF03976 PPK2: Polyphosphate k 98.5 4.4E-07 9.6E-12 89.1 9.8 184 220-445 30-225 (228)
68 TIGR02322 phosphon_PhnN phosph 98.5 3.1E-06 6.6E-11 78.2 14.6 66 358-438 112-177 (179)
69 cd01428 ADK Adenylate kinase ( 98.5 1.3E-06 2.8E-11 81.0 12.2 24 356-379 104-127 (194)
70 PRK13948 shikimate kinase; Pro 98.5 4.8E-06 1E-10 79.1 16.1 73 358-441 104-177 (182)
71 TIGR00235 udk uridine kinase. 98.5 6.1E-07 1.3E-11 85.5 10.0 76 356-440 125-205 (207)
72 PRK08118 topology modulation p 98.5 2.3E-07 4.9E-12 86.4 6.8 27 222-249 2-28 (167)
73 cd00464 SK Shikimate kinase (S 98.5 2.6E-06 5.7E-11 76.0 13.4 59 356-417 91-150 (154)
74 PRK13477 bifunctional pantoate 98.5 1E-06 2.2E-11 95.6 12.7 28 220-248 283-310 (512)
75 TIGR01313 therm_gnt_kin carboh 98.5 6.1E-06 1.3E-10 75.1 15.6 65 359-437 96-161 (163)
76 TIGR01351 adk adenylate kinase 98.5 3.2E-06 6.9E-11 80.7 14.2 25 224-249 2-26 (210)
77 PLN02674 adenylate kinase 98.5 6.1E-06 1.3E-10 81.9 16.2 28 221-249 31-58 (244)
78 PRK08154 anaerobic benzoate ca 98.4 5.1E-06 1.1E-10 84.6 15.7 75 357-442 227-304 (309)
79 cd00227 CPT Chloramphenicol (C 98.4 1.3E-05 2.7E-10 74.4 16.4 64 357-437 111-174 (175)
80 cd02023 UMPK Uridine monophosp 98.4 2.1E-06 4.5E-11 80.8 10.0 59 356-415 118-181 (198)
81 PF13238 AAA_18: AAA domain; P 98.4 1.3E-06 2.8E-11 74.9 7.8 21 224-244 1-21 (129)
82 PRK10078 ribose 1,5-bisphospho 98.3 5.5E-06 1.2E-10 77.7 12.1 67 356-439 110-176 (186)
83 PTZ00088 adenylate kinase 1; P 98.3 7.3E-06 1.6E-10 80.5 13.0 29 220-249 5-33 (229)
84 PF00485 PRK: Phosphoribulokin 98.3 2.1E-07 4.5E-12 87.8 1.6 56 356-413 126-186 (194)
85 PRK14526 adenylate kinase; Pro 98.3 1.2E-05 2.6E-10 78.0 13.6 27 222-249 1-27 (211)
86 cd02020 CMPK Cytidine monophos 98.3 9.8E-06 2.1E-10 71.4 12.0 26 223-249 1-26 (147)
87 cd02021 GntK Gluconate kinase 98.3 1.5E-05 3.3E-10 71.4 13.2 25 223-248 1-25 (150)
88 PRK08356 hypothetical protein; 98.3 3.1E-05 6.6E-10 73.3 15.9 38 358-395 116-154 (195)
89 PLN02199 shikimate kinase 98.3 2.5E-05 5.4E-10 79.7 15.7 84 358-442 196-291 (303)
90 PRK13951 bifunctional shikimat 98.3 1.4E-05 3.1E-10 86.4 14.5 63 358-433 93-155 (488)
91 PHA02530 pseT polynucleotide k 98.3 3.6E-05 7.8E-10 76.8 16.3 55 360-417 106-168 (300)
92 PLN02459 probable adenylate ki 98.2 1.8E-05 3.9E-10 79.4 13.7 32 217-249 25-56 (261)
93 COG3265 GntK Gluconate kinase 98.2 4.3E-05 9.4E-10 70.9 14.9 152 228-439 2-159 (161)
94 KOG3079 Uridylate kinase/adeny 98.2 5.2E-05 1.1E-09 72.5 15.7 72 356-438 112-192 (195)
95 COG0283 Cmk Cytidylate kinase 98.2 1.8E-05 4E-10 77.2 12.7 29 221-250 4-32 (222)
96 TIGR03708 poly_P_AMP_trns poly 98.2 1.3E-05 2.9E-10 86.6 12.7 166 218-416 296-473 (493)
97 PRK12339 2-phosphoglycerate ki 98.2 1E-05 2.2E-10 77.7 10.6 30 219-249 1-30 (197)
98 KOG3347 Predicted nucleotide k 98.2 1E-05 2.2E-10 75.2 9.8 49 352-400 88-139 (176)
99 PF13521 AAA_28: AAA domain; P 98.2 2.1E-05 4.6E-10 71.8 12.0 114 224-369 2-121 (163)
100 PRK06547 hypothetical protein; 98.2 1.6E-05 3.6E-10 74.6 11.2 42 359-405 120-161 (172)
101 PRK00023 cmk cytidylate kinase 98.2 9.4E-05 2E-09 72.2 16.5 30 219-249 2-31 (225)
102 PRK09825 idnK D-gluconate kina 98.2 0.00023 5E-09 66.9 18.5 74 356-442 98-171 (176)
103 PRK07667 uridine kinase; Provi 98.2 3.6E-05 7.8E-10 73.0 13.2 46 356-405 138-183 (193)
104 PRK14731 coaE dephospho-CoA ki 98.1 2.3E-05 4.9E-10 75.3 11.9 25 356-380 133-157 (208)
105 PRK03333 coaE dephospho-CoA ki 98.1 6.5E-06 1.4E-10 86.7 8.6 85 356-457 123-219 (395)
106 PRK06696 uridine kinase; Valid 98.1 7.9E-06 1.7E-10 78.9 8.2 60 356-415 146-210 (223)
107 PRK00081 coaE dephospho-CoA ki 98.1 2.7E-05 5.9E-10 73.9 11.4 24 356-379 124-147 (194)
108 KOG3354 Gluconate kinase [Carb 98.1 0.00035 7.7E-09 65.6 18.3 170 219-440 9-189 (191)
109 PRK14730 coaE dephospho-CoA ki 98.1 3.3E-05 7.1E-10 73.7 11.4 27 222-249 2-28 (195)
110 PRK05416 glmZ(sRNA)-inactivati 98.1 0.00014 3.1E-09 73.8 16.0 72 358-439 87-160 (288)
111 PF01202 SKI: Shikimate kinase 98.0 2.2E-05 4.8E-10 71.9 9.2 70 358-438 86-158 (158)
112 PRK14734 coaE dephospho-CoA ki 98.0 1.7E-05 3.7E-10 75.9 8.2 23 356-378 125-147 (200)
113 PLN02348 phosphoribulokinase 98.0 1.7E-05 3.7E-10 83.6 8.7 62 356-419 182-248 (395)
114 PRK15453 phosphoribulokinase; 98.0 9.7E-06 2.1E-10 82.2 6.6 49 356-406 146-199 (290)
115 TIGR00017 cmk cytidylate kinas 98.0 0.00018 3.9E-09 70.0 15.3 28 221-249 2-29 (217)
116 PRK14021 bifunctional shikimat 98.0 0.00014 3E-09 79.8 16.0 72 358-439 104-176 (542)
117 PRK14732 coaE dephospho-CoA ki 98.0 6E-05 1.3E-09 72.2 11.6 23 356-378 121-143 (196)
118 COG0563 Adk Adenylate kinase a 98.0 0.00021 4.6E-09 67.6 15.1 27 222-249 1-27 (178)
119 PRK06761 hypothetical protein; 98.0 0.00037 8E-09 70.7 17.3 31 219-250 1-31 (282)
120 PRK01184 hypothetical protein; 98.0 0.00012 2.6E-09 68.0 12.6 25 356-380 103-127 (184)
121 PF01121 CoaE: Dephospho-CoA k 97.9 5.9E-06 1.3E-10 78.3 3.4 26 222-249 1-26 (180)
122 PRK09270 nucleoside triphospha 97.9 0.0002 4.3E-09 69.5 14.0 50 190-248 10-59 (229)
123 PRK12338 hypothetical protein; 97.9 0.00013 2.7E-09 75.3 13.0 30 219-249 2-31 (319)
124 cd02029 PRK_like Phosphoribulo 97.9 2.3E-05 5E-10 79.1 7.3 59 356-416 140-209 (277)
125 TIGR00152 dephospho-CoA kinase 97.9 8.8E-05 1.9E-09 69.6 10.8 23 356-378 123-145 (188)
126 COG2019 AdkA Archaeal adenylat 97.9 0.00016 3.4E-09 68.5 12.3 77 355-438 108-187 (189)
127 PRK03846 adenylylsulfate kinas 97.9 0.00035 7.6E-09 66.2 14.5 26 219-244 22-47 (198)
128 PTZ00451 dephospho-CoA kinase; 97.9 0.00011 2.4E-09 73.0 11.3 26 222-248 2-27 (244)
129 TIGR00455 apsK adenylylsulfate 97.9 0.00013 2.8E-09 68.0 11.1 29 218-247 15-43 (184)
130 COG0529 CysC Adenylylsulfate k 97.9 0.00018 3.9E-09 68.7 11.9 32 219-251 21-52 (197)
131 PRK11545 gntK gluconate kinase 97.9 0.00065 1.4E-08 62.9 15.4 67 356-437 90-158 (163)
132 PRK07261 topology modulation p 97.8 6.2E-05 1.3E-09 70.2 8.3 26 222-248 1-26 (171)
133 PF08433 KTI12: Chromatin asso 97.8 0.00026 5.7E-09 71.2 13.4 151 222-414 2-155 (270)
134 PLN02318 phosphoribulokinase/u 97.8 3.2E-05 6.8E-10 85.4 7.1 57 356-413 176-237 (656)
135 PRK14733 coaE dephospho-CoA ki 97.8 0.00022 4.8E-09 69.1 12.2 29 220-249 5-33 (204)
136 cd02024 NRK1 Nicotinamide ribo 97.8 9.5E-05 2.1E-09 70.6 9.4 24 356-379 130-153 (187)
137 PF00406 ADK: Adenylate kinase 97.8 0.0001 2.2E-09 66.5 9.1 22 355-376 101-122 (151)
138 PLN02422 dephospho-CoA kinase 97.8 7.1E-05 1.5E-09 73.9 8.6 23 356-378 125-147 (232)
139 PF01583 APS_kinase: Adenylyls 97.8 8.2E-05 1.8E-09 69.3 7.8 30 220-250 1-30 (156)
140 TIGR03263 guanyl_kin guanylate 97.8 0.00077 1.7E-08 62.1 14.1 24 221-244 1-24 (180)
141 PRK14737 gmk guanylate kinase; 97.7 0.00062 1.4E-08 64.6 13.4 26 219-244 2-27 (186)
142 cd02025 PanK Pantothenate kina 97.7 5.7E-05 1.2E-09 73.5 6.3 24 223-247 1-24 (220)
143 COG0237 CoaE Dephospho-CoA kin 97.7 0.0002 4.4E-09 69.2 10.0 27 221-249 2-28 (201)
144 PRK09518 bifunctional cytidyla 97.7 0.0014 3E-08 74.1 18.0 77 356-442 154-234 (712)
145 COG1072 CoaA Panthothenate kin 97.7 0.00023 5.1E-09 71.8 10.4 26 219-244 80-105 (283)
146 PRK05439 pantothenate kinase; 97.7 0.00015 3.2E-09 74.5 9.3 29 218-247 83-111 (311)
147 cd02028 UMPK_like Uridine mono 97.7 2.8E-05 6.1E-10 73.1 2.9 25 223-248 1-25 (179)
148 PRK00300 gmk guanylate kinase; 97.6 0.0015 3.2E-08 61.5 14.3 26 219-244 3-28 (205)
149 COG0194 Gmk Guanylate kinase [ 97.6 0.00085 1.8E-08 64.4 12.4 25 220-244 3-27 (191)
150 cd02022 DPCK Dephospho-coenzym 97.6 0.00028 6.1E-09 65.9 8.8 23 356-378 121-143 (179)
151 PF06414 Zeta_toxin: Zeta toxi 97.6 0.001 2.3E-08 63.1 12.4 29 217-246 11-39 (199)
152 PRK05537 bifunctional sulfate 97.6 0.0031 6.7E-08 69.8 17.6 30 218-248 389-418 (568)
153 PRK11860 bifunctional 3-phosph 97.6 0.00088 1.9E-08 75.1 13.6 28 221-249 442-469 (661)
154 COG2326 Uncharacterized conser 97.5 0.00046 9.9E-09 69.0 9.5 166 218-416 71-248 (270)
155 TIGR00554 panK_bact pantothena 97.5 0.00084 1.8E-08 68.4 11.6 26 219-244 60-85 (290)
156 cd02026 PRK Phosphoribulokinas 97.5 0.00042 9.1E-09 69.7 9.3 62 356-419 115-181 (273)
157 PF13207 AAA_17: AAA domain; P 97.5 9E-05 2E-09 63.7 3.8 26 223-249 1-26 (121)
158 cd02027 APSK Adenosine 5'-phos 97.5 0.00081 1.7E-08 61.3 10.1 24 223-247 1-24 (149)
159 PRK07429 phosphoribulokinase; 97.4 0.0009 2E-08 69.2 11.0 30 219-249 6-35 (327)
160 PRK08099 bifunctional DNA-bind 97.4 0.0013 2.9E-08 69.7 12.1 29 220-249 218-246 (399)
161 PRK12337 2-phosphoglycerate ki 97.4 0.0012 2.6E-08 71.3 11.0 30 219-249 253-282 (475)
162 TIGR01663 PNK-3'Pase polynucle 97.4 0.0024 5.3E-08 70.0 13.4 26 219-244 367-392 (526)
163 PRK12269 bifunctional cytidyla 97.3 0.009 1.9E-07 69.1 18.5 32 217-249 30-61 (863)
164 PHA00729 NTP-binding motif con 97.3 0.0012 2.5E-08 65.2 9.3 27 356-382 118-144 (226)
165 TIGR03575 selen_PSTK_euk L-ser 97.3 0.0042 9.1E-08 64.7 13.6 40 356-399 154-193 (340)
166 smart00072 GuKc Guanylate kina 97.3 0.0042 9.2E-08 58.2 12.4 24 221-244 2-25 (184)
167 PRK05506 bifunctional sulfate 97.2 0.0027 5.8E-08 70.8 12.5 30 218-248 457-486 (632)
168 PF07931 CPT: Chloramphenicol 97.2 0.0059 1.3E-07 57.9 12.6 64 356-436 109-172 (174)
169 PRK04220 2-phosphoglycerate ki 97.2 0.005 1.1E-07 63.2 12.9 30 219-249 90-119 (301)
170 COG2074 2-phosphoglycerate kin 97.2 0.015 3.2E-07 58.6 15.7 79 358-445 210-293 (299)
171 TIGR01526 nadR_NMN_Atrans nico 97.2 0.0021 4.6E-08 66.2 9.9 148 221-400 162-309 (325)
172 PRK04301 radA DNA repair and r 97.1 0.0012 2.6E-08 67.3 7.2 106 131-244 3-125 (317)
173 TIGR02236 recomb_radA DNA repa 97.0 0.0014 3.1E-08 66.3 7.1 99 138-244 3-118 (310)
174 PF03668 ATP_bind_2: P-loop AT 96.9 0.014 3E-07 59.5 12.9 73 358-438 83-155 (284)
175 PF00625 Guanylate_kin: Guanyl 96.9 0.029 6.3E-07 52.3 14.0 25 220-244 1-25 (183)
176 cd02019 NK Nucleoside/nucleoti 96.9 0.00085 1.9E-08 53.5 3.0 22 223-244 1-22 (69)
177 COG3911 Predicted ATPase [Gene 96.8 0.011 2.3E-07 55.6 10.2 147 221-400 9-160 (183)
178 COG3709 Uncharacterized compon 96.8 0.02 4.3E-07 54.4 12.0 65 359-438 117-181 (192)
179 PLN02772 guanylate kinase 96.4 0.056 1.2E-06 57.5 13.9 26 219-244 133-158 (398)
180 PRK00889 adenylylsulfate kinas 96.4 0.0034 7.3E-08 57.9 4.0 29 219-248 2-30 (175)
181 TIGR00150 HI0065_YjeE ATPase, 96.3 0.0042 9E-08 56.6 4.2 30 219-249 20-49 (133)
182 PF02367 UPF0079: Uncharacteri 96.3 0.0039 8.4E-08 56.1 3.8 30 219-249 13-42 (123)
183 PRK10416 signal recognition pa 96.3 0.012 2.7E-07 60.6 8.0 54 195-249 88-141 (318)
184 smart00382 AAA ATPases associa 96.2 0.0045 9.9E-08 51.7 3.5 28 221-249 2-29 (148)
185 COG4639 Predicted kinase [Gene 96.2 0.022 4.8E-07 53.6 8.0 41 334-380 80-120 (168)
186 KOG3220 Similar to bacterial d 96.1 0.014 3E-07 57.0 6.8 26 222-249 2-27 (225)
187 PF13189 Cytidylate_kin2: Cyti 96.1 0.017 3.7E-07 54.3 7.2 27 223-250 1-27 (179)
188 TIGR00064 ftsY signal recognit 96.1 0.018 3.8E-07 58.1 7.5 54 195-249 46-99 (272)
189 PF00004 AAA: ATPase family as 95.9 0.0073 1.6E-07 51.8 3.6 24 224-248 1-24 (132)
190 KOG0635 Adenosine 5'-phosphosu 95.9 0.074 1.6E-06 50.2 10.2 33 218-251 28-60 (207)
191 COG0645 Predicted kinase [Gene 95.8 0.12 2.5E-06 49.2 11.3 27 222-249 2-28 (170)
192 PTZ00035 Rad51 protein; Provis 95.8 0.018 3.9E-07 59.8 6.5 103 134-244 23-141 (337)
193 TIGR03499 FlhF flagellar biosy 95.8 0.038 8.3E-07 55.8 8.5 26 219-244 192-217 (282)
194 smart00483 POLXc DNA polymeras 95.7 0.0072 1.6E-07 62.7 3.0 94 130-236 85-179 (334)
195 PRK14722 flhF flagellar biosyn 95.7 0.026 5.5E-07 59.7 7.1 27 218-244 134-160 (374)
196 PRK10646 ADP-binding protein; 95.6 0.014 3E-07 54.5 4.3 30 219-249 26-55 (153)
197 PF03215 Rad17: Rad17 cell cyc 95.6 0.0097 2.1E-07 65.3 3.6 50 187-249 23-72 (519)
198 cd00071 GMPK Guanosine monopho 95.5 0.0096 2.1E-07 53.6 2.8 22 223-244 1-22 (137)
199 COG1618 Predicted nucleotide k 95.5 0.014 3E-07 55.3 3.7 31 219-250 3-33 (179)
200 PLN03187 meiotic recombination 95.4 0.031 6.7E-07 58.4 6.6 97 134-243 31-148 (344)
201 cd01130 VirB11-like_ATPase Typ 95.4 0.026 5.6E-07 53.1 5.4 26 219-244 23-48 (186)
202 cd00141 NT_POLXc Nucleotidyltr 95.4 0.013 2.9E-07 60.0 3.7 74 131-204 82-155 (307)
203 COG1660 Predicted P-loop-conta 95.4 0.22 4.7E-06 50.6 12.0 73 359-439 85-157 (286)
204 PF00005 ABC_tran: ABC transpo 95.2 0.015 3.3E-07 50.9 3.1 26 219-244 9-34 (137)
205 COG4619 ABC-type uncharacteriz 95.2 0.016 3.4E-07 55.7 3.1 27 217-243 25-51 (223)
206 PRK05800 cobU adenosylcobinami 95.1 0.025 5.5E-07 53.1 4.3 26 222-248 2-27 (170)
207 PF14520 HHH_5: Helix-hairpin- 95.1 0.0065 1.4E-07 47.4 0.3 30 135-164 6-35 (60)
208 COG0802 Predicted ATPase or ki 95.1 0.022 4.8E-07 53.0 3.8 30 219-249 23-52 (149)
209 PRK06995 flhF flagellar biosyn 95.1 0.057 1.2E-06 58.9 7.6 49 195-244 231-279 (484)
210 PRK12724 flagellar biosynthesi 95.1 0.054 1.2E-06 58.2 7.1 26 219-244 221-246 (432)
211 COG3172 NadR Predicted ATPase/ 95.0 0.076 1.7E-06 50.4 7.1 31 222-253 9-39 (187)
212 PRK14974 cell division protein 95.0 0.056 1.2E-06 56.3 6.9 31 218-249 137-167 (336)
213 cd03292 ABC_FtsE_transporter F 95.0 0.02 4.4E-07 54.2 3.4 27 218-244 24-50 (214)
214 COG1136 SalX ABC-type antimicr 95.0 0.021 4.5E-07 56.5 3.5 27 217-243 27-53 (226)
215 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.0 0.02 4.4E-07 54.4 3.4 27 218-244 27-53 (218)
216 smart00763 AAA_PrkA PrkA AAA d 94.9 0.023 5E-07 59.7 3.9 29 219-248 76-104 (361)
217 TIGR00960 3a0501s02 Type II (G 94.9 0.022 4.7E-07 54.3 3.4 27 218-244 26-52 (216)
218 TIGR02673 FtsE cell division A 94.9 0.023 4.9E-07 54.0 3.5 27 218-244 25-51 (214)
219 cd04163 Era Era subfamily. Er 94.9 0.023 5E-07 49.5 3.2 25 220-244 2-26 (168)
220 PF13173 AAA_14: AAA domain 94.9 0.027 5.9E-07 49.6 3.7 25 220-244 1-25 (128)
221 cd03269 ABC_putative_ATPase Th 94.9 0.023 5.1E-07 53.8 3.5 27 218-244 23-49 (210)
222 TIGR01166 cbiO cobalt transpor 94.9 0.024 5.1E-07 53.0 3.5 27 218-244 15-41 (190)
223 cd03229 ABC_Class3 This class 94.9 0.025 5.4E-07 52.6 3.5 27 218-244 23-49 (178)
224 PLN02840 tRNA dimethylallyltra 94.9 0.033 7.2E-07 59.7 4.9 31 217-248 17-47 (421)
225 cd03225 ABC_cobalt_CbiO_domain 94.8 0.024 5.2E-07 53.7 3.4 27 218-244 24-50 (211)
226 TIGR02211 LolD_lipo_ex lipopro 94.8 0.024 5.2E-07 54.1 3.4 27 218-244 28-54 (221)
227 cd03260 ABC_PstB_phosphate_tra 94.8 0.024 5.3E-07 54.3 3.5 27 218-244 23-49 (227)
228 TIGR03608 L_ocin_972_ABC putat 94.8 0.025 5.3E-07 53.3 3.4 27 218-244 21-47 (206)
229 cd03257 ABC_NikE_OppD_transpor 94.8 0.025 5.3E-07 54.1 3.3 27 218-244 28-54 (228)
230 cd03259 ABC_Carb_Solutes_like 94.8 0.025 5.5E-07 53.7 3.4 27 218-244 23-49 (213)
231 cd03235 ABC_Metallic_Cations A 94.7 0.025 5.3E-07 53.8 3.2 27 218-244 22-48 (213)
232 cd03224 ABC_TM1139_LivF_branch 94.7 0.025 5.4E-07 53.9 3.3 27 218-244 23-49 (222)
233 cd03226 ABC_cobalt_CbiO_domain 94.7 0.026 5.7E-07 53.3 3.4 27 218-244 23-49 (205)
234 TIGR02239 recomb_RAD51 DNA rep 94.7 0.037 8.1E-07 56.9 4.7 26 218-243 93-118 (316)
235 TIGR02315 ABC_phnC phosphonate 94.7 0.026 5.6E-07 54.6 3.4 27 218-244 25-51 (243)
236 cd03262 ABC_HisP_GlnQ_permease 94.7 0.028 6.1E-07 53.2 3.5 27 218-244 23-49 (213)
237 cd03219 ABC_Mj1267_LivG_branch 94.7 0.024 5.3E-07 54.6 3.1 27 218-244 23-49 (236)
238 cd03301 ABC_MalK_N The N-termi 94.7 0.027 6E-07 53.4 3.4 27 218-244 23-49 (213)
239 PRK13900 type IV secretion sys 94.7 0.044 9.5E-07 56.9 5.1 38 220-258 159-196 (332)
240 PRK10751 molybdopterin-guanine 94.7 0.037 8E-07 52.5 4.2 31 219-250 4-34 (173)
241 cd03293 ABC_NrtD_SsuB_transpor 94.7 0.028 6E-07 53.8 3.4 27 218-244 27-53 (220)
242 cd03230 ABC_DR_subfamily_A Thi 94.7 0.029 6.2E-07 51.9 3.4 26 219-244 24-49 (173)
243 cd03256 ABC_PhnC_transporter A 94.7 0.028 6E-07 54.3 3.4 27 218-244 24-50 (241)
244 cd03263 ABC_subfamily_A The AB 94.7 0.029 6.3E-07 53.5 3.5 27 218-244 25-51 (220)
245 TIGR01978 sufC FeS assembly AT 94.7 0.028 6.1E-07 54.3 3.4 27 218-244 23-49 (243)
246 cd03268 ABC_BcrA_bacitracin_re 94.6 0.029 6.2E-07 53.1 3.4 26 219-244 24-49 (208)
247 PLN02796 D-glycerate 3-kinase 94.6 0.031 6.7E-07 58.5 3.9 29 219-248 98-126 (347)
248 cd03246 ABCC_Protease_Secretio 94.6 0.032 6.9E-07 51.6 3.6 27 218-244 25-51 (173)
249 cd03258 ABC_MetN_methionine_tr 94.6 0.029 6.4E-07 54.0 3.4 27 218-244 28-54 (233)
250 cd00009 AAA The AAA+ (ATPases 94.6 0.038 8.2E-07 46.8 3.7 25 220-244 18-42 (151)
251 cd03265 ABC_DrrA DrrA is the A 94.6 0.031 6.7E-07 53.5 3.4 27 218-244 23-49 (220)
252 cd03261 ABC_Org_Solvent_Resist 94.6 0.03 6.5E-07 54.1 3.4 27 218-244 23-49 (235)
253 cd03247 ABCC_cytochrome_bd The 94.6 0.032 6.9E-07 51.8 3.4 27 218-244 25-51 (178)
254 PF00437 T2SE: Type II/IV secr 94.6 0.045 9.7E-07 54.1 4.7 39 220-259 126-165 (270)
255 COG5324 Uncharacterized conser 94.5 0.83 1.8E-05 50.0 14.3 76 165-248 323-400 (758)
256 PLN02165 adenylate isopentenyl 94.5 0.035 7.6E-07 57.8 4.0 30 218-248 40-69 (334)
257 cd03266 ABC_NatA_sodium_export 94.5 0.031 6.8E-07 53.1 3.4 26 219-244 29-54 (218)
258 PF13401 AAA_22: AAA domain; P 94.5 0.032 7E-07 48.1 3.2 25 220-244 3-27 (131)
259 cd03223 ABCD_peroxisomal_ALDP 94.5 0.034 7.4E-07 51.3 3.5 27 218-244 24-50 (166)
260 cd03232 ABC_PDR_domain2 The pl 94.5 0.032 6.8E-07 52.6 3.3 26 218-243 30-55 (192)
261 cd03296 ABC_CysA_sulfate_impor 94.5 0.031 6.8E-07 54.2 3.4 27 218-244 25-51 (239)
262 PRK00091 miaA tRNA delta(2)-is 94.5 0.035 7.5E-07 57.1 3.8 29 219-248 2-30 (307)
263 PRK10584 putative ABC transpor 94.5 0.033 7.2E-07 53.4 3.4 27 218-244 33-59 (228)
264 PF07728 AAA_5: AAA domain (dy 94.5 0.043 9.3E-07 48.4 3.9 25 224-249 2-26 (139)
265 TIGR03864 PQQ_ABC_ATP ABC tran 94.5 0.033 7.2E-07 53.9 3.4 27 218-244 24-50 (236)
266 cd03264 ABC_drug_resistance_li 94.5 0.031 6.7E-07 53.0 3.2 25 219-244 24-48 (211)
267 TIGR03410 urea_trans_UrtE urea 94.5 0.033 7.2E-07 53.5 3.4 27 218-244 23-49 (230)
268 cd03214 ABC_Iron-Siderophores_ 94.5 0.036 7.8E-07 51.6 3.5 27 218-244 22-48 (180)
269 COG1126 GlnQ ABC-type polar am 94.4 0.03 6.5E-07 55.4 3.1 27 217-243 24-50 (240)
270 cd03218 ABC_YhbG The ABC trans 94.4 0.034 7.3E-07 53.5 3.4 27 218-244 23-49 (232)
271 PRK11124 artP arginine transpo 94.4 0.034 7.3E-07 54.0 3.4 27 218-244 25-51 (242)
272 PRK10247 putative ABC transpor 94.4 0.036 7.7E-07 53.5 3.5 28 217-244 29-56 (225)
273 PRK11629 lolD lipoprotein tran 94.4 0.034 7.4E-07 53.7 3.4 27 218-244 32-58 (233)
274 cd03253 ABCC_ATM1_transporter 94.4 0.035 7.7E-07 53.4 3.5 27 218-244 24-50 (236)
275 PRK14242 phosphate transporter 94.4 0.035 7.5E-07 54.3 3.4 27 218-244 29-55 (253)
276 cd03254 ABCC_Glucan_exporter_l 94.4 0.035 7.6E-07 53.2 3.4 27 218-244 26-52 (229)
277 TIGR02770 nickel_nikD nickel i 94.4 0.034 7.4E-07 53.7 3.3 26 219-244 10-35 (230)
278 PF05729 NACHT: NACHT domain 94.4 0.038 8.2E-07 49.0 3.4 22 223-244 2-23 (166)
279 TIGR03238 dnd_assoc_3 dnd syst 94.4 0.026 5.6E-07 61.4 2.6 42 198-239 9-50 (504)
280 cd03222 ABC_RNaseL_inhibitor T 94.3 0.039 8.4E-07 52.2 3.5 26 219-244 23-48 (177)
281 PRK13851 type IV secretion sys 94.3 0.056 1.2E-06 56.5 5.0 29 219-248 160-188 (344)
282 KOG0730 AAA+-type ATPase [Post 94.3 0.78 1.7E-05 51.7 14.0 29 220-249 467-495 (693)
283 KOG0744 AAA+-type ATPase [Post 94.3 0.031 6.8E-07 58.2 3.1 27 221-248 177-203 (423)
284 PRK14247 phosphate ABC transpo 94.3 0.038 8.1E-07 53.9 3.5 27 218-244 26-52 (250)
285 PRK11264 putative amino-acid A 94.3 0.037 8E-07 53.9 3.4 27 218-244 26-52 (250)
286 PRK12723 flagellar biosynthesi 94.3 0.13 2.7E-06 54.7 7.6 26 219-244 172-197 (388)
287 PRK10895 lipopolysaccharide AB 94.3 0.038 8.2E-07 53.6 3.5 27 218-244 26-52 (241)
288 COG1116 TauB ABC-type nitrate/ 94.3 0.037 8E-07 55.4 3.4 27 217-243 25-51 (248)
289 cd03244 ABCC_MRP_domain2 Domai 94.3 0.04 8.6E-07 52.6 3.6 27 218-244 27-53 (221)
290 cd01131 PilT Pilus retraction 94.3 0.055 1.2E-06 51.6 4.5 22 223-244 3-24 (198)
291 PRK13539 cytochrome c biogenes 94.3 0.04 8.6E-07 52.4 3.5 27 218-244 25-51 (207)
292 PRK14721 flhF flagellar biosyn 94.3 0.12 2.5E-06 55.6 7.4 26 219-244 189-214 (420)
293 cd03215 ABC_Carb_Monos_II This 94.3 0.038 8.3E-07 51.5 3.3 27 218-244 23-49 (182)
294 PRK11701 phnK phosphonate C-P 94.3 0.038 8.2E-07 54.3 3.4 27 218-244 29-55 (258)
295 TIGR02323 CP_lyasePhnK phospho 94.3 0.038 8.1E-07 54.0 3.4 27 218-244 26-52 (253)
296 PRK14250 phosphate ABC transpo 94.3 0.038 8.3E-07 53.8 3.4 27 218-244 26-52 (241)
297 cd03252 ABCC_Hemolysin The ABC 94.3 0.039 8.4E-07 53.3 3.4 27 218-244 25-51 (237)
298 cd03238 ABC_UvrA The excision 94.3 0.039 8.4E-07 52.2 3.3 25 218-242 18-42 (176)
299 cd03298 ABC_ThiQ_thiamine_tran 94.3 0.041 8.9E-07 52.2 3.5 27 218-244 21-47 (211)
300 PRK13538 cytochrome c biogenes 94.2 0.042 9E-07 52.1 3.5 27 218-244 24-50 (204)
301 cd03245 ABCC_bacteriocin_expor 94.2 0.04 8.8E-07 52.5 3.4 27 218-244 27-53 (220)
302 PRK13541 cytochrome c biogenes 94.2 0.041 8.9E-07 51.8 3.4 26 219-244 24-49 (195)
303 PRK13540 cytochrome c biogenes 94.2 0.043 9.3E-07 51.9 3.5 27 218-244 24-50 (200)
304 cd03216 ABC_Carb_Monos_I This 94.2 0.043 9.2E-07 50.5 3.4 27 218-244 23-49 (163)
305 PRK09493 glnQ glutamine ABC tr 94.2 0.04 8.8E-07 53.4 3.4 27 218-244 24-50 (240)
306 PF07726 AAA_3: ATPase family 94.2 0.033 7.1E-07 50.8 2.5 25 224-249 2-26 (131)
307 cd03295 ABC_OpuCA_Osmoprotecti 94.2 0.042 9E-07 53.4 3.4 27 218-244 24-50 (242)
308 cd03228 ABCC_MRP_Like The MRP 94.2 0.044 9.6E-07 50.6 3.5 27 218-244 25-51 (171)
309 TIGR03771 anch_rpt_ABC anchore 94.2 0.041 8.9E-07 53.0 3.4 26 219-244 4-29 (223)
310 TIGR02881 spore_V_K stage V sp 94.2 0.05 1.1E-06 53.9 4.0 26 219-244 40-65 (261)
311 PRK14262 phosphate ABC transpo 94.2 0.042 9.2E-07 53.5 3.5 27 218-244 26-52 (250)
312 TIGR03005 ectoine_ehuA ectoine 94.1 0.041 8.9E-07 53.8 3.4 27 218-244 23-49 (252)
313 PRK13695 putative NTPase; Prov 94.1 0.046 1E-06 50.5 3.5 23 222-244 1-23 (174)
314 KOG3062 RNA polymerase II elon 94.1 0.97 2.1E-05 45.3 12.7 43 357-399 102-144 (281)
315 PRK14241 phosphate transporter 94.1 0.042 9.2E-07 54.0 3.4 27 218-244 27-53 (258)
316 PF08477 Miro: Miro-like prote 94.1 0.046 9.9E-07 46.3 3.2 22 223-244 1-22 (119)
317 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.1 0.043 9.3E-07 53.0 3.4 27 218-244 26-52 (238)
318 PRK10908 cell division protein 94.1 0.044 9.5E-07 52.5 3.4 27 218-244 25-51 (222)
319 PHA02575 1 deoxynucleoside mon 94.1 0.04 8.7E-07 54.5 3.2 23 222-244 1-23 (227)
320 PRK14255 phosphate ABC transpo 94.1 0.043 9.3E-07 53.6 3.4 26 218-243 28-53 (252)
321 PRK10744 pstB phosphate transp 94.1 0.043 9.3E-07 54.1 3.4 27 218-244 36-62 (260)
322 cd00820 PEPCK_HprK Phosphoenol 94.1 0.046 9.9E-07 48.1 3.2 24 219-242 13-36 (107)
323 PRK14274 phosphate ABC transpo 94.1 0.044 9.6E-07 53.9 3.5 27 218-244 35-61 (259)
324 TIGR01184 ntrCD nitrate transp 94.1 0.044 9.6E-07 53.0 3.4 26 219-244 9-34 (230)
325 PRK11248 tauB taurine transpor 94.1 0.044 9.5E-07 54.1 3.4 27 218-244 24-50 (255)
326 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.1 0.046 1E-06 49.4 3.3 27 218-244 23-49 (144)
327 PRK11247 ssuB aliphatic sulfon 94.1 0.044 9.5E-07 54.4 3.4 27 218-244 35-61 (257)
328 PRK14267 phosphate ABC transpo 94.1 0.045 9.9E-07 53.4 3.5 27 218-244 27-53 (253)
329 cd03234 ABCG_White The White s 94.1 0.044 9.5E-07 52.7 3.3 27 218-244 30-56 (226)
330 cd03267 ABC_NatA_like Similar 94.1 0.045 9.7E-07 53.2 3.4 26 219-244 45-70 (236)
331 PF03308 ArgK: ArgK protein; 94.1 0.048 1E-06 55.1 3.7 31 219-250 27-57 (266)
332 cd03237 ABC_RNaseL_inhibitor_d 94.0 0.046 1E-06 53.9 3.5 26 219-244 23-48 (246)
333 PRK15177 Vi polysaccharide exp 94.0 0.045 9.8E-07 52.6 3.4 26 219-244 11-36 (213)
334 TIGR00972 3a0107s01c2 phosphat 94.0 0.046 9.9E-07 53.3 3.4 27 218-244 24-50 (247)
335 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.0 0.045 9.7E-07 52.9 3.3 27 218-244 45-71 (224)
336 cd03250 ABCC_MRP_domain1 Domai 94.0 0.047 1E-06 51.6 3.4 27 218-244 28-54 (204)
337 TIGR01189 ccmA heme ABC export 94.0 0.048 1E-06 51.4 3.4 27 218-244 23-49 (198)
338 PRK11300 livG leucine/isoleuci 94.0 0.043 9.4E-07 53.5 3.2 26 219-244 29-54 (255)
339 TIGR01425 SRP54_euk signal rec 94.0 0.3 6.6E-06 52.6 9.8 31 217-248 96-126 (429)
340 PRK14251 phosphate ABC transpo 94.0 0.047 1E-06 53.3 3.4 27 218-244 27-53 (251)
341 cd03369 ABCC_NFT1 Domain 2 of 94.0 0.05 1.1E-06 51.5 3.5 27 218-244 31-57 (207)
342 PF13191 AAA_16: AAA ATPase do 94.0 0.047 1E-06 49.6 3.2 26 219-244 22-47 (185)
343 COG1120 FepC ABC-type cobalami 94.0 0.047 1E-06 55.0 3.5 28 217-244 24-51 (258)
344 cd03251 ABCC_MsbA MsbA is an e 94.0 0.048 1E-06 52.5 3.4 27 218-244 25-51 (234)
345 cd03233 ABC_PDR_domain1 The pl 94.0 0.043 9.2E-07 52.2 3.0 27 218-244 30-56 (202)
346 PRK14239 phosphate transporter 93.9 0.047 1E-06 53.2 3.4 26 218-243 28-53 (252)
347 TIGR00968 3a0106s01 sulfate AB 93.9 0.049 1.1E-06 52.9 3.4 27 218-244 23-49 (237)
348 cd03236 ABC_RNaseL_inhibitor_d 93.9 0.048 1E-06 54.2 3.4 27 218-244 23-49 (255)
349 PRK14256 phosphate ABC transpo 93.9 0.05 1.1E-06 53.2 3.5 27 218-244 27-53 (252)
350 TIGR03411 urea_trans_UrtD urea 93.9 0.05 1.1E-06 52.7 3.5 27 218-244 25-51 (242)
351 PRK14240 phosphate transporter 93.9 0.05 1.1E-06 53.0 3.5 26 218-243 26-51 (250)
352 TIGR02324 CP_lyasePhnL phospho 93.9 0.052 1.1E-06 52.0 3.5 27 218-244 31-57 (224)
353 TIGR01277 thiQ thiamine ABC tr 93.9 0.05 1.1E-06 51.8 3.4 27 218-244 21-47 (213)
354 COG3839 MalK ABC-type sugar tr 93.9 0.047 1E-06 57.0 3.4 26 218-243 26-51 (338)
355 cd03248 ABCC_TAP TAP, the Tran 93.9 0.053 1.2E-06 51.9 3.5 27 218-244 37-63 (226)
356 PRK13638 cbiO cobalt transport 93.9 0.047 1E-06 54.2 3.2 27 218-244 24-50 (271)
357 TIGR02238 recomb_DMC1 meiotic 93.9 0.12 2.6E-06 53.2 6.3 99 137-243 4-118 (313)
358 PRK10771 thiQ thiamine transpo 93.9 0.051 1.1E-06 52.4 3.4 27 218-244 22-48 (232)
359 CHL00131 ycf16 sulfate ABC tra 93.9 0.047 1E-06 53.2 3.2 26 218-243 30-55 (252)
360 PRK14248 phosphate ABC transpo 93.9 0.051 1.1E-06 53.8 3.5 27 218-244 44-70 (268)
361 PRK14270 phosphate ABC transpo 93.9 0.053 1.2E-06 52.9 3.5 27 218-244 27-53 (251)
362 TIGR02788 VirB11 P-type DNA tr 93.9 0.082 1.8E-06 53.9 5.0 26 219-244 142-167 (308)
363 cd03217 ABC_FeS_Assembly ABC-t 93.8 0.054 1.2E-06 51.3 3.5 27 218-244 23-49 (200)
364 PRK15056 manganese/iron transp 93.8 0.05 1.1E-06 54.1 3.4 27 218-244 30-56 (272)
365 PRK14269 phosphate ABC transpo 93.8 0.052 1.1E-06 52.9 3.4 27 218-244 25-51 (246)
366 PRK14272 phosphate ABC transpo 93.8 0.054 1.2E-06 52.8 3.5 27 218-244 27-53 (252)
367 PRK13648 cbiO cobalt transport 93.8 0.052 1.1E-06 53.8 3.4 27 218-244 32-58 (269)
368 PF03266 NTPase_1: NTPase; In 93.8 0.052 1.1E-06 50.9 3.2 22 224-246 2-23 (168)
369 cd03231 ABC_CcmA_heme_exporter 93.8 0.055 1.2E-06 51.3 3.4 27 218-244 23-49 (201)
370 TIGR00101 ureG urease accessor 93.8 0.059 1.3E-06 51.7 3.6 26 221-247 1-26 (199)
371 PRK09984 phosphonate/organopho 93.8 0.053 1.1E-06 53.4 3.4 27 218-244 27-53 (262)
372 KOG3308 Uncharacterized protei 93.8 0.05 1.1E-06 53.2 3.1 29 219-248 2-30 (225)
373 PRK10575 iron-hydroxamate tran 93.8 0.051 1.1E-06 53.8 3.2 27 218-244 34-60 (265)
374 PRK14249 phosphate ABC transpo 93.8 0.055 1.2E-06 52.9 3.4 27 218-244 27-53 (251)
375 PRK13649 cbiO cobalt transport 93.7 0.052 1.1E-06 54.0 3.3 27 218-244 30-56 (280)
376 PRK11831 putative ABC transpor 93.7 0.053 1.2E-06 53.8 3.3 27 218-244 30-56 (269)
377 PF11731 Cdd1: Pathogenicity l 93.7 0.04 8.7E-07 47.5 2.1 30 133-162 11-40 (93)
378 PF03205 MobB: Molybdopterin g 93.7 0.055 1.2E-06 49.2 3.1 28 222-250 1-28 (140)
379 TIGR03740 galliderm_ABC gallid 93.7 0.06 1.3E-06 51.6 3.5 27 218-244 23-49 (223)
380 PRK09435 membrane ATPase/prote 93.7 0.072 1.6E-06 55.4 4.4 32 218-250 53-84 (332)
381 PRK13543 cytochrome c biogenes 93.7 0.058 1.3E-06 51.6 3.4 27 218-244 34-60 (214)
382 PRK14235 phosphate transporter 93.7 0.057 1.2E-06 53.5 3.5 27 218-244 42-68 (267)
383 PRK14259 phosphate ABC transpo 93.7 0.057 1.2E-06 53.7 3.5 27 218-244 36-62 (269)
384 cd00267 ABC_ATPase ABC (ATP-bi 93.7 0.061 1.3E-06 48.7 3.4 26 219-244 23-48 (157)
385 PRK10419 nikE nickel transport 93.7 0.055 1.2E-06 53.7 3.3 27 218-244 35-61 (268)
386 PRK09544 znuC high-affinity zi 93.7 0.057 1.2E-06 53.3 3.4 27 218-244 27-53 (251)
387 PF13555 AAA_29: P-loop contai 93.7 0.075 1.6E-06 42.4 3.4 23 221-243 23-45 (62)
388 cd03213 ABCG_EPDR ABCG transpo 93.7 0.057 1.2E-06 51.0 3.3 27 218-244 32-58 (194)
389 PLN03046 D-glycerate 3-kinase; 93.7 0.067 1.5E-06 57.6 4.1 28 219-247 210-237 (460)
390 cd03294 ABC_Pro_Gly_Bertaine T 93.7 0.057 1.2E-06 53.7 3.4 27 218-244 47-73 (269)
391 PRK14245 phosphate ABC transpo 93.6 0.059 1.3E-06 52.6 3.4 26 218-243 26-51 (250)
392 TIGR02769 nickel_nikE nickel i 93.6 0.057 1.2E-06 53.4 3.4 27 218-244 34-60 (265)
393 PRK09580 sufC cysteine desulfu 93.6 0.054 1.2E-06 52.6 3.1 27 218-244 24-50 (248)
394 PF03193 DUF258: Protein of un 93.6 0.063 1.4E-06 50.5 3.4 25 220-244 34-58 (161)
395 PRK13548 hmuV hemin importer A 93.6 0.059 1.3E-06 53.2 3.4 27 218-244 25-51 (258)
396 PRK13640 cbiO cobalt transport 93.6 0.059 1.3E-06 54.0 3.4 27 218-244 30-56 (282)
397 PRK13645 cbiO cobalt transport 93.6 0.059 1.3E-06 54.0 3.4 27 218-244 34-60 (289)
398 cd03290 ABCC_SUR1_N The SUR do 93.6 0.064 1.4E-06 51.2 3.4 26 219-244 25-50 (218)
399 PRK14268 phosphate ABC transpo 93.6 0.063 1.4E-06 52.8 3.5 27 218-244 35-61 (258)
400 PRK13547 hmuV hemin importer A 93.6 0.059 1.3E-06 54.0 3.3 27 218-244 24-50 (272)
401 PRK13632 cbiO cobalt transport 93.6 0.061 1.3E-06 53.5 3.4 27 218-244 32-58 (271)
402 PF13245 AAA_19: Part of AAA d 93.5 0.077 1.7E-06 43.5 3.4 24 221-244 10-34 (76)
403 PRK14244 phosphate ABC transpo 93.5 0.066 1.4E-06 52.3 3.5 27 218-244 28-54 (251)
404 PRK05703 flhF flagellar biosyn 93.5 0.18 3.9E-06 54.0 7.1 25 220-244 220-244 (424)
405 PF05496 RuvB_N: Holliday junc 93.5 0.063 1.4E-06 53.3 3.4 27 222-249 51-77 (233)
406 TIGR02868 CydC thiol reductant 93.5 0.059 1.3E-06 58.4 3.5 27 218-244 358-384 (529)
407 TIGR02982 heterocyst_DevA ABC 93.5 0.067 1.4E-06 51.2 3.4 27 218-244 28-54 (220)
408 PF10391 DNA_pol_lambd_f: Fing 93.5 0.037 8E-07 42.7 1.4 28 136-163 4-31 (52)
409 PRK14253 phosphate ABC transpo 93.5 0.068 1.5E-06 52.1 3.5 27 218-244 26-52 (249)
410 PRK14261 phosphate ABC transpo 93.5 0.064 1.4E-06 52.5 3.4 26 218-243 29-54 (253)
411 PRK13647 cbiO cobalt transport 93.5 0.064 1.4E-06 53.5 3.4 27 218-244 28-54 (274)
412 PRK14273 phosphate ABC transpo 93.5 0.066 1.4E-06 52.4 3.4 27 218-244 30-56 (254)
413 PF01926 MMR_HSR1: 50S ribosom 93.5 0.066 1.4E-06 45.7 3.0 20 224-243 2-21 (116)
414 PRK14260 phosphate ABC transpo 93.5 0.068 1.5E-06 52.6 3.5 27 218-244 30-56 (259)
415 COG2884 FtsE Predicted ATPase 93.5 0.064 1.4E-06 52.3 3.2 27 218-244 25-51 (223)
416 PRK14237 phosphate transporter 93.4 0.067 1.5E-06 53.0 3.5 27 218-244 43-69 (267)
417 PRK14238 phosphate transporter 93.4 0.071 1.5E-06 53.1 3.6 27 218-244 47-73 (271)
418 cd03297 ABC_ModC_molybdenum_tr 93.4 0.064 1.4E-06 51.1 3.1 25 219-244 22-46 (214)
419 CHL00195 ycf46 Ycf46; Provisio 93.4 0.23 5.1E-06 54.2 7.8 95 150-249 190-286 (489)
420 TIGR03015 pepcterm_ATPase puta 93.4 0.07 1.5E-06 52.0 3.4 26 221-247 43-68 (269)
421 PRK14243 phosphate transporter 93.4 0.07 1.5E-06 52.8 3.5 27 218-244 33-59 (264)
422 PRK10619 histidine/lysine/argi 93.3 0.07 1.5E-06 52.4 3.4 27 218-244 28-54 (257)
423 COG1703 ArgK Putative periplas 93.3 0.086 1.9E-06 54.3 4.1 34 217-251 47-80 (323)
424 PRK11614 livF leucine/isoleuci 93.3 0.065 1.4E-06 51.8 3.1 27 218-244 28-54 (237)
425 PRK15112 antimicrobial peptide 93.3 0.071 1.5E-06 52.9 3.4 27 218-244 36-62 (267)
426 TIGR01288 nodI ATP-binding ABC 93.3 0.069 1.5E-06 54.1 3.4 27 218-244 27-53 (303)
427 cd04171 SelB SelB subfamily. 93.3 0.068 1.5E-06 47.1 3.0 22 222-243 1-22 (164)
428 KOG3078 Adenylate kinase [Nucl 93.3 0.33 7.2E-06 48.4 8.0 25 220-244 14-38 (235)
429 PRK13768 GTPase; Provisional 93.3 0.077 1.7E-06 52.7 3.6 27 221-248 2-28 (253)
430 PRK11889 flhF flagellar biosyn 93.3 0.25 5.4E-06 53.1 7.6 26 219-244 239-264 (436)
431 PRK13643 cbiO cobalt transport 93.3 0.072 1.6E-06 53.6 3.4 27 218-244 29-55 (288)
432 cd03283 ABC_MutS-like MutS-lik 93.3 0.072 1.6E-06 51.0 3.3 24 221-244 25-48 (199)
433 TIGR01188 drrA daunorubicin re 93.3 0.074 1.6E-06 53.8 3.5 27 218-244 16-42 (302)
434 PRK12727 flagellar biosynthesi 93.3 0.25 5.3E-06 54.7 7.7 27 218-244 347-373 (559)
435 PRK10253 iron-enterobactin tra 93.2 0.069 1.5E-06 52.8 3.2 27 218-244 30-56 (265)
436 PRK13646 cbiO cobalt transport 93.2 0.074 1.6E-06 53.4 3.4 27 218-244 30-56 (286)
437 PRK10418 nikD nickel transport 93.2 0.075 1.6E-06 52.1 3.4 27 218-244 26-52 (254)
438 PRK03695 vitamin B12-transport 93.2 0.069 1.5E-06 52.4 3.1 27 218-244 19-45 (248)
439 TIGR03873 F420-0_ABC_ATP propo 93.2 0.072 1.6E-06 52.3 3.2 27 218-244 24-50 (256)
440 PRK14252 phosphate ABC transpo 93.2 0.08 1.7E-06 52.3 3.5 27 218-244 39-65 (265)
441 PRK14258 phosphate ABC transpo 93.2 0.08 1.7E-06 52.3 3.5 27 218-244 30-56 (261)
442 PRK11231 fecE iron-dicitrate t 93.2 0.079 1.7E-06 52.0 3.4 27 218-244 25-51 (255)
443 cd03243 ABC_MutS_homologs The 93.2 0.075 1.6E-06 50.5 3.2 24 220-243 28-51 (202)
444 TIGR01650 PD_CobS cobaltochela 93.2 0.11 2.3E-06 54.1 4.5 28 222-250 65-92 (327)
445 PRK13635 cbiO cobalt transport 93.2 0.077 1.7E-06 53.2 3.4 27 218-244 30-56 (279)
446 PRK13650 cbiO cobalt transport 93.1 0.078 1.7E-06 53.1 3.4 27 218-244 30-56 (279)
447 PRK13633 cobalt transporter AT 93.1 0.076 1.6E-06 53.1 3.4 27 218-244 33-59 (280)
448 cd01120 RecA-like_NTPases RecA 93.1 0.073 1.6E-06 46.6 2.9 22 223-244 1-22 (165)
449 COG3842 PotA ABC-type spermidi 93.1 0.074 1.6E-06 55.8 3.4 26 218-243 28-53 (352)
450 PRK14266 phosphate ABC transpo 93.1 0.084 1.8E-06 51.4 3.5 26 218-243 26-51 (250)
451 cd04155 Arl3 Arl3 subfamily. 93.1 0.09 1.9E-06 47.3 3.5 26 219-244 12-37 (173)
452 PRK13546 teichoic acids export 93.1 0.081 1.8E-06 52.8 3.4 27 218-244 47-73 (264)
453 PF10662 PduV-EutP: Ethanolami 93.1 0.076 1.6E-06 49.1 3.0 23 222-244 2-24 (143)
454 cd03116 MobB Molybdenum is an 93.1 0.089 1.9E-06 49.0 3.5 28 222-250 2-29 (159)
455 cd03271 ABC_UvrA_II The excisi 93.1 0.071 1.5E-06 53.6 3.0 33 205-241 9-41 (261)
456 PRK14236 phosphate transporter 93.1 0.082 1.8E-06 52.6 3.4 27 218-244 48-74 (272)
457 PRK14246 phosphate ABC transpo 93.1 0.081 1.7E-06 52.3 3.4 26 219-244 34-59 (257)
458 cd03300 ABC_PotA_N PotA is an 93.1 0.085 1.8E-06 51.0 3.4 27 218-244 23-49 (232)
459 PRK13639 cbiO cobalt transport 93.0 0.081 1.8E-06 52.8 3.4 27 218-244 25-51 (275)
460 PRK13652 cbiO cobalt transport 93.0 0.083 1.8E-06 52.7 3.4 27 218-244 27-53 (277)
461 PF03029 ATP_bind_1: Conserved 93.0 0.085 1.9E-06 52.2 3.5 23 226-249 1-23 (238)
462 cd00544 CobU Adenosylcobinamid 93.0 0.11 2.5E-06 48.7 4.2 34 223-257 1-34 (169)
463 PRK14265 phosphate ABC transpo 93.0 0.084 1.8E-06 52.7 3.4 27 218-244 43-69 (274)
464 PRK14263 phosphate ABC transpo 93.0 0.085 1.8E-06 52.3 3.4 27 218-244 31-57 (261)
465 PRK14275 phosphate ABC transpo 93.0 0.083 1.8E-06 53.1 3.4 26 218-243 62-87 (286)
466 COG0552 FtsY Signal recognitio 93.0 0.24 5.3E-06 51.6 6.8 80 171-251 84-168 (340)
467 PRK13642 cbiO cobalt transport 93.0 0.086 1.9E-06 52.6 3.5 27 218-244 30-56 (277)
468 CHL00181 cbbX CbbX; Provisiona 93.0 0.097 2.1E-06 53.1 3.9 26 219-244 57-82 (287)
469 PRK14490 putative bifunctional 93.0 0.087 1.9E-06 55.1 3.6 30 219-249 3-32 (369)
470 PRK13651 cobalt transporter AT 93.0 0.083 1.8E-06 53.9 3.4 27 218-244 30-56 (305)
471 PRK13641 cbiO cobalt transport 93.0 0.086 1.9E-06 53.0 3.4 27 218-244 30-56 (287)
472 cd03288 ABCC_SUR2 The SUR doma 93.0 0.091 2E-06 51.8 3.5 27 218-244 44-70 (257)
473 COG1121 ZnuC ABC-type Mn/Zn tr 92.9 0.083 1.8E-06 53.1 3.3 27 217-243 26-52 (254)
474 cd03115 SRP The signal recogni 92.9 0.096 2.1E-06 48.1 3.4 22 223-244 2-23 (173)
475 COG1763 MobB Molybdopterin-gua 92.9 0.12 2.6E-06 48.7 4.0 30 221-251 2-31 (161)
476 TIGR02640 gas_vesic_GvpN gas v 92.9 0.1 2.2E-06 52.0 3.8 28 221-249 21-48 (262)
477 cd01129 PulE-GspE PulE/GspE Th 92.9 0.13 2.9E-06 51.5 4.7 24 221-244 80-103 (264)
478 TIGR00176 mobB molybdopterin-g 92.9 0.11 2.3E-06 48.1 3.6 27 223-250 1-27 (155)
479 cd01876 YihA_EngB The YihA (En 92.9 0.081 1.8E-06 46.2 2.8 20 224-243 2-21 (170)
480 PRK14254 phosphate ABC transpo 92.9 0.093 2E-06 52.8 3.5 26 219-244 63-88 (285)
481 PRK13631 cbiO cobalt transport 92.9 0.088 1.9E-06 54.1 3.4 27 218-244 49-75 (320)
482 PRK13637 cbiO cobalt transport 92.9 0.09 2E-06 52.9 3.4 27 218-244 30-56 (287)
483 PRK14271 phosphate ABC transpo 92.9 0.091 2E-06 52.6 3.4 26 219-244 45-70 (276)
484 PRK11153 metN DL-methionine tr 92.8 0.088 1.9E-06 54.5 3.4 27 218-244 28-54 (343)
485 cd04159 Arl10_like Arl10-like 92.8 0.082 1.8E-06 45.8 2.7 21 224-244 2-22 (159)
486 PF00448 SRP54: SRP54-type pro 92.8 0.1 2.2E-06 50.1 3.7 26 221-247 1-26 (196)
487 PRK13644 cbiO cobalt transport 92.8 0.091 2E-06 52.4 3.4 27 218-244 25-51 (274)
488 PRK15455 PrkA family serine pr 92.8 0.1 2.2E-06 58.2 4.0 32 220-252 102-133 (644)
489 cd04164 trmE TrmE (MnmE, ThdF, 92.8 0.096 2.1E-06 45.6 3.1 24 221-244 1-24 (157)
490 TIGR00959 ffh signal recogniti 92.8 0.6 1.3E-05 50.3 9.7 27 218-244 96-122 (428)
491 COG4559 ABC-type hemin transpo 92.8 0.12 2.6E-06 51.3 4.0 27 220-247 26-52 (259)
492 cd01983 Fer4_NifH The Fer4_Nif 92.8 0.1 2.2E-06 41.6 3.0 25 223-248 1-25 (99)
493 PRK11432 fbpC ferric transport 92.8 0.093 2E-06 54.8 3.5 27 218-244 29-55 (351)
494 PRK11144 modC molybdate transp 92.8 0.092 2E-06 54.6 3.4 26 219-244 22-47 (352)
495 COG4167 SapF ABC-type antimicr 92.7 0.094 2E-06 51.1 3.2 25 219-243 37-61 (267)
496 TIGR02142 modC_ABC molybdenum 92.7 0.094 2E-06 54.5 3.4 26 219-244 21-46 (354)
497 PRK11650 ugpC glycerol-3-phosp 92.7 0.095 2.1E-06 54.7 3.5 27 218-244 27-53 (356)
498 cd03299 ABC_ModC_like Archeal 92.7 0.1 2.2E-06 50.7 3.4 26 219-244 23-48 (235)
499 PRK11000 maltose/maltodextrin 92.7 0.096 2.1E-06 54.9 3.4 27 218-244 26-52 (369)
500 PF00025 Arf: ADP-ribosylation 92.6 0.11 2.3E-06 48.3 3.3 25 219-243 12-36 (175)
No 1
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.3e-46 Score=350.00 Aligned_cols=204 Identities=48% Similarity=0.850 Sum_probs=184.5
Q ss_pred EEcCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCCCCccchhhhhhcCCCCCchHHHHHHHHHHHHHHHHhcCC
Q 012135 226 VEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQERESSGG 305 (470)
Q Consensus 226 IEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~Fla~R~~ql~~~~~~ 305 (470)
|||+||+||||+++.+.+.. ...++++.||+++|+|+.+.+.++|+.||.+|.||+|+||.|.+++|++++.+...+
T Consensus 27 iEGNIa~GKsTfl~~~~~~t---~~~~ev~tEPV~kW~nV~~~~~n~L~~mY~ep~Rws~tfQtYv~ltrL~~~~~p~~~ 103 (244)
T KOG4235|consen 27 IEGNIAVGKSTFLNFFLNKT---YEEWEVLTEPVAKWQNVQGANANLLDMMYREPARWSYTFQTYVFLTRLKVQLEPFNG 103 (244)
T ss_pred EecccccchHHHHHHHHhcc---CccceecCchHHHHhccccccccHHHHHhhchHhheehhhHHHHHHHHHHHhcCCCC
Confidence 99999999999999888752 223578999999999998777789999999999999999999999999988887767
Q ss_pred CCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHHHHHHhccccccCC
Q 012135 306 IKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRKRAEEGGV 385 (470)
Q Consensus 306 ~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~leRI~kRgR~~E~~i 385 (470)
.+++.+|+||||||||||+.++|++|.|++.+|.+|++||+|+.... ++.+|++|||+++|++|++||..|+|.+|+.+
T Consensus 104 ~kpvrimERSv~SdRyiFv~nl~esg~m~e~e~~iy~eW~d~i~~~~-~v~~dgiIYLrasPetc~~Ri~~R~R~EE~gi 182 (244)
T KOG4235|consen 104 RKPVRIMERSVYSDRYIFVENLYESGSMNEVEYVIYQEWFDWILRSM-DVSLDGIIYLRASPETCYKRIYLRAREEEKGI 182 (244)
T ss_pred CCCeehhhhhhhhhHHHHHHHHHhcCCcccchhhhHHHHHHHHHhcc-ccccceEEEeecChHHHHHHHHHHhhhhhcCC
Confidence 78999999999999999999999999999999999999999998653 36899999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhhhhHHhhhhcCCeEEEecCCCcCCcchh
Q 012135 386 SLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMHSSIQKVPALVLDCEPNIDFSRDI 465 (470)
Q Consensus 386 ~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~~L~~~i~~~p~l~~d~~~~~~~~~~~ 465 (470)
++.||+.||+.|+.|+.+.. + ..||++|+|||||+.|+||+.+.
T Consensus 183 pL~YLe~LH~~HE~WLi~~~-----------------------------------f-~~lq~vpvLVLDad~n~df~~e~ 226 (244)
T KOG4235|consen 183 PLKYLEALHELHESWLIKLH-----------------------------------F-PNLQAVPVLVLDADHNMDFSLEL 226 (244)
T ss_pred cHHHHHHHHHHHHHHHHHHh-----------------------------------h-hHhhcCCeEEEecccchhHHHHH
Confidence 99999999999999977311 1 34889999999999999999988
Q ss_pred hhhc
Q 012135 466 DLKR 469 (470)
Q Consensus 466 ~~~~ 469 (470)
.++.
T Consensus 227 ~~~~ 230 (244)
T KOG4235|consen 227 TEYE 230 (244)
T ss_pred HHHH
Confidence 7764
No 2
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=100.00 E-value=3e-36 Score=288.22 Aligned_cols=203 Identities=26% Similarity=0.466 Sum_probs=176.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCCCCccchhhhhhcCCCCCchHHHHHHHHHHHHHHH
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQER 300 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~Fla~R~~ql~ 300 (470)
.++|||+|+||+|||||+++|+++ +++..++|.+ +++++|++||.+|.+|+|.+|+||++.|+++++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~-l~~~~~~E~v------------ednp~L~~FY~d~~~yaf~~QiyFL~~Rfk~~k 70 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH-LGFKVFYELV------------EDNPFLDLFYEDPERYAFLLQIYFLLNRFKKIK 70 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH-hCCceeeecc------------cCChHHHHHHHhHHHhhHHHHHHHHHHHHHHHH
Confidence 689999999999999999999998 8877655544 346899999999999999999999999999776
Q ss_pred HhcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhh---cCCCCCCcEEEEEeCCHHHHHHHHHHh
Q 012135 301 ESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVS---VLPGLIPDGFIYLRASPDTCHKRMMLR 377 (470)
Q Consensus 301 ~~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~---~Lp~lkPDLvIyLda~pEv~leRI~kR 377 (470)
..... +. .+.||+|++|..+|+...+..|.|++.++..|.++++.|.. .+|+ .||++||||+++++.++||.+|
T Consensus 71 ~~~~~-~~-~i~drsI~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~-~PdllIyLd~~~e~~l~RI~~R 147 (216)
T COG1428 71 KALSD-KN-NILDRSIFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPG-RPDLLIYLDASLETLLRRIAKR 147 (216)
T ss_pred HHhcc-cc-cccCcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCC-CCCEEEEEeCCHHHHHHHHHHh
Confidence 65322 22 79999999998899999999999999999999999997654 3443 8999999999999999999999
Q ss_pred ccccccCC---cHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhhhhHHh
Q 012135 378 KRAEEGGV---SLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMHS 443 (470)
Q Consensus 378 gR~~E~~i---~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~~L~~ 443 (470)
||++|+.. ..+|++.++..|..|+..+..+++..||++.+|++ .+++..+.|+..|..++.+
T Consensus 148 gR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~~~D~~----~~~~d~~~v~~~I~~~~~~ 212 (216)
T COG1428 148 GRPFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGIDGDSIDFV----NNEQDLEKVLDQILAKLKL 212 (216)
T ss_pred CCCcccccccchHHHHHHHHHHHHHHHHhcccCCeeeeccceeccc----CCHHHHHHHHHHHHHHHhh
Confidence 99999733 25799999999999999999899999999999983 5588888888888877753
No 3
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.97 E-value=2.8e-30 Score=248.19 Aligned_cols=189 Identities=23% Similarity=0.329 Sum_probs=151.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCceE------eccCCccccccCCCCccchhhhhhcCCC---CCchHHHHHHHH
Q 012135 223 TFCVEGNISVGKTTFLQRIANETLELRDLVE------IVPEPIDKWQDVGPDHFNILGAYYDAPE---RYAYTFQNYVFV 293 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~E------vv~EPv~~W~~i~~~~~~lL~~fY~dp~---r~af~~Ql~Fla 293 (470)
+|+|||++|||||||++.|+++ ++...+.+ .+.||.+....-...++++|+.||.+|. +|++.+|+++++
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~-l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~ 79 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEK-LGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYS 79 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH-hCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHH
Confidence 5999999999999999999997 76542211 1233332211100134568999999988 899999999999
Q ss_pred HHHHHHHHhc---CCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHH
Q 012135 294 TRVMQERESS---GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTC 370 (470)
Q Consensus 294 ~R~~ql~~~~---~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~ 370 (470)
+|++|+.+.. ...+.++|+||+++|+ ++|+.+.+.+|.+.+.++..|.+++..+...+| .||++|||++||+++
T Consensus 80 ~R~~~~~~~i~~~l~~g~~VI~DR~~~S~-~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~--~Pd~~i~l~~~~~~~ 156 (219)
T cd02030 80 SRLLQYSDALEHLLSTGQGVVLERSPFSD-FVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELL--PPHLVIYLDVPVPEV 156 (219)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEecchhHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccC--CCCEEEEEeCCHHHH
Confidence 9999865532 1235689999999999 699999999999999999999999888766666 899999999999999
Q ss_pred HHHHHHhccccccCCcHHHHHHHHHHHHhhcCc-CC-CCCeEEEEcc
Q 012135 371 HKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFP-FE-SGNHGVLAVS 415 (470)
Q Consensus 371 leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~-~~-~~~v~VIDvd 415 (470)
++||.+|++..|..++.+|++++++.|+.|+.+ +. ..++.+||++
T Consensus 157 ~~Ri~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~~ 203 (219)
T cd02030 157 QKRIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDWT 203 (219)
T ss_pred HHHHHHcCCchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeCC
Confidence 999999999888888899999999999999754 32 3578888876
No 4
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.97 E-value=2.3e-29 Score=234.73 Aligned_cols=185 Identities=37% Similarity=0.663 Sum_probs=154.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCCCCccchhhhhhcCCCCCchHHHHHHHHHHHHHHHHh
Q 012135 223 TFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQERES 302 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~Fla~R~~ql~~~ 302 (470)
+|+|||++||||||+++.|+++ ++. .+++||+. |.. ..+++++.||.++.++++.+|++|+++|++++.+.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~-~~~----~~~~Ep~~-~~~---~~~~~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~ 71 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEH-LGY----EVVPEPVE-PDV---EGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDA 71 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHH-hCC----cccccccc-ccC---CCCCCHHHHHhCHHhccHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999997 553 35788864 221 34678999999988999999999999999988765
Q ss_pred cC--CCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHHHHHHhccc
Q 012135 303 SG--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRKRA 380 (470)
Q Consensus 303 ~~--~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~leRI~kRgR~ 380 (470)
.. ..+.++|+||+++|+. +|....+..|.+.+.++..|.+|+..+...++ .||++|||+++|+++++|+++|++.
T Consensus 72 ~~~~~~~~~vI~DR~~~S~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~pd~~i~l~~~~~~~~~Ri~~R~r~ 148 (193)
T cd01673 72 LEHLSTGQGVILERSIFSDR-VFAEANLKEGGIMKTEYDLYNELFDNLIPELL--PPDLVIYLDASPETCLKRIKKRGRP 148 (193)
T ss_pred HhhcccCCceEEEcChhhhH-HHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCC--CCCEEEEEeCCHHHHHHHHHhcCcH
Confidence 32 2357999999999995 56656666677777889999999988875555 8999999999999999999999998
Q ss_pred cccCCcHHHHHHHHHHHHhhcCc--CCCCCeEEEEccCCCc
Q 012135 381 EEGGVSLDYLRSLHEKHENWLFP--FESGNHGVLAVSKLPL 419 (470)
Q Consensus 381 ~E~~i~~eYLe~L~e~Ye~w~~~--~~~~~v~VIDvd~lD~ 419 (470)
.|...+.+|++.+++.|+.|+.. ....++.+||++.+|+
T Consensus 149 ~e~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~vid~~~~~~ 189 (193)
T cd01673 149 EEQGIPLDYLEDLHEAYEKWFLPQMYEKAPVLIIDANEADI 189 (193)
T ss_pred hhhcCCHHHHHHHHHHHHHHHhhccCCCCCEEEEECCcccc
Confidence 77767789999999999999986 3446899999998877
No 5
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=99.93 E-value=1.6e-25 Score=203.35 Aligned_cols=141 Identities=36% Similarity=0.640 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCC-CcEEEEEeC
Q 012135 287 FQNYVFVTRVMQERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLI-PDGFIYLRA 365 (470)
Q Consensus 287 ~Ql~Fla~R~~ql~~~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lk-PDLvIyLda 365 (470)
+|++|+.+|++++.+ ...+..+++|||++||.+||+.++++.|.+++.++..|.++++++...++ . ||++|||++
T Consensus 1 ~Q~~~l~~R~~~~~~--~~~~~~~i~eRsi~sd~~vF~~~~~~~g~l~~~e~~~Y~~~~~~l~~~~~--~~pdl~IYL~~ 76 (146)
T PF01712_consen 1 FQLYFLLSRFEQYKE--LNTKQNVIMERSIYSDDFVFAKMLFKSGYLSKEEYDLYDKLFDELIEEIP--KSPDLIIYLDA 76 (146)
T ss_dssp HHHHHHHHHHHHHHH--STSSSEEEEES-HHHHHHTHHHHHHHTTSS-HHHHHHHHHHHHHHHHHCC--HH-SEEEEEE-
T ss_pred CcHHHHHHHHHHHHH--HhcCCCceecCCeeechHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhh--ccCCeEEEEeC
Confidence 699999999999887 23467999999999999999999999999999999999999999998887 7 999999999
Q ss_pred CHHHHHHHHHHhccccccCCcHHHHHHHH-HHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHH
Q 012135 366 SPDTCHKRMMLRKRAEEGGVSLDYLRSLH-EKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFY 435 (470)
Q Consensus 366 ~pEv~leRI~kRgR~~E~~i~~eYLe~L~-e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~ 435 (470)
||++|++||++|||+.|..++.+||+.|+ +.|+.|+..+...++.+||++.+|++.+ ++.++.+++
T Consensus 77 ~~e~~~~RI~kRgR~~E~~i~~~Yl~~L~~~~y~~~~~~~~~~~vl~id~~~~d~~~~----~~~~~~~~~ 143 (146)
T PF01712_consen 77 SPETCLERIKKRGREEEKNIPLEYLERLHEEAYEDWLKKYDSTPVLVIDADNLDFVEN----PEDIEQVIN 143 (146)
T ss_dssp -HHHHHHHHHHCTTGGGTTS-HHHHHHHHHHHHCCHHSCCTTTTGCEEEECEEECCSH----HTTHHHHHC
T ss_pred CHHHHHHHHHHhCCchhcCCCHHHHHHHhHHHHHHHHHhCCCCceEEEECCccCcccC----HHHHHHHHH
Confidence 99999999999999999999999999999 8999999999888999999999888433 444555443
No 6
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.92 E-value=1.5e-24 Score=208.85 Aligned_cols=197 Identities=17% Similarity=0.145 Sum_probs=140.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCc-eEeccCCccccccCCCCccchhhhhhcCC-CCC-chHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAYYDAP-ERY-AYTFQNYVFVTR 295 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~-~Evv~EPv~~W~~i~~~~~~lL~~fY~dp-~r~-af~~Ql~Fla~R 295 (470)
|++|||+|||+|||||||++++|+++ |...++ +..++||.++ ..+..++.+..++ ... ..+.-++|+++|
T Consensus 1 ~~g~fI~iEGiDGaGKTT~~~~L~~~-l~~~g~~v~~trEP~~~------~ige~iR~~ll~~~~~~~~~~e~lLfaadR 73 (208)
T COG0125 1 MKGMFIVIEGIDGAGKTTQAELLKER-LEERGIKVVLTREPGGT------PIGEKIRELLLNGEEKLSPKAEALLFAADR 73 (208)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH-HHHcCCeEEEEeCCCCC------hHHHHHHHHHcCCccCCCHHHHHHHHHHHH
Confidence 68999999999999999999999997 777663 4578999754 1234566666554 333 445566789999
Q ss_pred HHHHHHhcC---CCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHH
Q 012135 296 VMQERESSG---GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHK 372 (470)
Q Consensus 296 ~~ql~~~~~---~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~le 372 (470)
..|+.+... ..+.+||+||+++| +.+||. .....+++...++..... ++++||++||||+||+++++
T Consensus 74 ~~h~~~~i~pal~~g~vVI~DRy~~S------s~AYQg-~~~~~~~~~~~~l~~~~~---~~~~PD~ti~Ldv~~e~al~ 143 (208)
T COG0125 74 AQHLEEVIKPALKEGKVVICDRYVDS------SLAYQG-GGRGLDLDWVLALNEFAP---GGLKPDLTLYLDVPPEVALE 143 (208)
T ss_pred HHHHHHHHHHhhcCCCEEEECCcccH------HHHhhh-hccCCCHHHHHHHHHhcc---CCCCCCEEEEEeCCHHHHHH
Confidence 998765421 22456666665554 567763 223445555554443322 23599999999999999999
Q ss_pred HHHHhccc---cccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhhhhHH
Q 012135 373 RMMLRKRA---EEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMH 442 (470)
Q Consensus 373 RI~kRgR~---~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~~L~ 442 (470)
|+.+|+.. +|+ ...+|++++++.|.++...+.. ++.+||++. +.+++.+.|...+...+.
T Consensus 144 R~~~r~~~~~r~E~-~~~~f~~kvr~~Y~~la~~~~~-r~~vIda~~--------~~e~v~~~i~~~l~~~l~ 206 (208)
T COG0125 144 RIRKRGELRDRFEK-EDDEFLEKVREGYLELAAKFPE-RIIVIDASR--------PLEEVHEEILKILKERLG 206 (208)
T ss_pred HHHhcCCccchhhh-HHHHHHHHHHHHHHHHHhhCCC-eEEEEECCC--------CHHHHHHHHHHHHHHhhc
Confidence 99999653 332 3346899999999999888754 689999997 568888888777776553
No 7
>PRK07933 thymidylate kinase; Validated
Probab=99.91 E-value=9.4e-24 Score=202.99 Aligned_cols=193 Identities=16% Similarity=0.131 Sum_probs=129.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCCCc-eEeccCCccccccCCCCccchhhhhhcC----CCCCchHHHHHHHHHHH
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAYYDA----PERYAYTFQNYVFVTRV 296 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~-~Evv~EPv~~W~~i~~~~~~lL~~fY~d----p~r~af~~Ql~Fla~R~ 296 (470)
|+|+|||+||||||||++.|+++ |...++ +..+.||..+ ....+..++.+..+ ...+.+..+++|+++|+
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~-L~~~g~~v~~~~~P~~~----~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~ 75 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAA-LEARGRSVATLAFPRYG----RSVHADLAAEALHGRHGDLADSVYAMATLFALDRA 75 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH-HHHCCCeEEEEecCCCC----CCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhh
Confidence 69999999999999999999998 776654 3457788321 00112345544432 22356778889999999
Q ss_pred HHHHHhcC--CCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhh---cCCCCCCcEEEEEeCCHHHHH
Q 012135 297 MQERESSG--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVS---VLPGLIPDGFIYLRASPDTCH 371 (470)
Q Consensus 297 ~ql~~~~~--~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~---~Lp~lkPDLvIyLda~pEv~l 371 (470)
+|.....+ ..+.+||+||+++|+. +|+...+....-.....|...+.. .+| .||++||||+||++++
T Consensus 76 ~~~~~I~p~l~~g~~VI~DRy~~S~~------Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~--~PDl~i~Ldv~~e~a~ 147 (213)
T PRK07933 76 GARDELAGLLAAHDVVILDRYVASNA------AYSAARLHQDADGEAVAWVAELEFGRLGLP--VPDLQVLLDVPVELAA 147 (213)
T ss_pred hhHHHHHHHHhCCCEEEECCccchhH------HHhccCCCcccchHHHHHHHHHHHhhcCCC--CCCEEEEecCCHHHHH
Confidence 88644321 2356888888888873 344322111000122233333332 344 8999999999999999
Q ss_pred HHHHHhccc--------cccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhh
Q 012135 372 KRMMLRKRA--------EEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLD 437 (470)
Q Consensus 372 eRI~kRgR~--------~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I 437 (470)
+|+.+|++. +|. ..+|++++++.|..++..+....+.+||++. +++++.++|.+.+
T Consensus 148 ~Ri~~R~~~~~~~~~d~~E~--~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~--------~~e~v~~~i~~~~ 211 (213)
T PRK07933 148 ERARRRAAQDADRARDAYER--DDGLQQRTGAVYAELAAQGWGGPWLVVDPDV--------DPAALAARLAAAL 211 (213)
T ss_pred HHHHhhccccCCcccccccc--cHHHHHHHHHHHHHHHHhcCCCCeEEeCCCC--------CHHHHHHHHHHHh
Confidence 999999753 332 4799999999999998765334788898864 5677777766543
No 8
>PRK13976 thymidylate kinase; Provisional
Probab=99.91 E-value=3.2e-23 Score=199.29 Aligned_cols=198 Identities=14% Similarity=0.020 Sum_probs=137.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCC-C--ceEeccCCccccccCCCCccchhhhhhcCCCCC-chHHHHHHHHHHHH
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELR-D--LVEIVPEPIDKWQDVGPDHFNILGAYYDAPERY-AYTFQNYVFVTRVM 297 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~-~--~~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~-af~~Ql~Fla~R~~ 297 (470)
++|+|||+||||||||++.|+++ |... + .+..+.||.+.+ .+..++.+..++... ..+..++|+++|.+
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~-L~~~~g~~~v~~~~eP~~~~------~g~~ir~~l~~~~~~~~~~~~llf~a~R~~ 73 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEY-LSDIYGENNVVLTREPGGTS------FNELVRGLLLSLKNLDKISELLLFIAMRRE 73 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HHHhcCCcceEEeeCCCCCH------HHHHHHHHHcCCcCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999997 7653 2 345688996542 235667666543323 33444678999999
Q ss_pred HHHHh-c--CCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHHHH
Q 012135 298 QERES-S--GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRM 374 (470)
Q Consensus 298 ql~~~-~--~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~leRI 374 (470)
|+.+. . ...+.+||+||+++|+ .+|+ |...+.+.+.+..+...+ ..| .||++|||++||+++++|+
T Consensus 74 ~~~~~I~p~l~~G~~VI~DRy~~S~------~Ayq-~~~~g~~~~~i~~l~~~~--~~~--~PDl~i~Ldv~~e~a~~Ri 142 (209)
T PRK13976 74 HFVKVILPALLQGKIVICDRFIDST------IAYQ-GYGCGVDLSLIRDLNDLV--VDK--YPDITFVLDIDIELSLSRA 142 (209)
T ss_pred HHHHHHHHHHHCCCEEEECCCcCHH------HHhc-cccCCCCHHHHHHHHHHh--hCC--CCCEEEEEeCCHHHHHHHh
Confidence 86542 1 1235688888888776 3454 322344555555544433 234 8999999999999999999
Q ss_pred HHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhhhhHHh
Q 012135 375 MLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMHS 443 (470)
Q Consensus 375 ~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~~L~~ 443 (470)
.+|+ +| ..+.+|++++++.|..++..+. ..+.+||++...- ...+++++.++|++.|.+.+..
T Consensus 143 ~~~~--~e-~~~~~~l~~v~~~Y~~l~~~~~-~~~~~id~~~~~~--~~~~~e~v~~~i~~~i~~~~~~ 205 (209)
T PRK13976 143 DKNG--YE-FMDLEFYDKVRKGFREIVIKNP-HRCHVITCIDAKD--NIEDINSVHLEIVKLLHAVTKD 205 (209)
T ss_pred cccc--hh-cccHHHHHHHHHHHHHHHHhCC-CCeEEEECCCCcc--CcCCHHHHHHHHHHHHHHHHHH
Confidence 7543 44 3568999999999999988754 3577888742110 1124789999999988877653
No 9
>PHA03132 thymidine kinase; Provisional
Probab=99.89 E-value=1e-22 Score=220.18 Aligned_cols=167 Identities=23% Similarity=0.304 Sum_probs=125.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCCCCccchhhhhhcCCCCC----------chHHHH
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERY----------AYTFQN 289 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~----------af~~Ql 289 (470)
++++|+|||+||||||||++.|+++ ++ ..+..++||++.|+++. .+++..+|++..++ .+..|+
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~-lg--~~Vi~t~EP~~~W~~vy---~n~l~~I~~~~~r~~~g~~s~~~ella~Ql 329 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGI-LG--DNVLVFPEPMRYWTEVY---SNCLKEIYKLVKPGKHGKTSTSAKLLACQM 329 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHH-hC--CceEEEeCCCCchhhcc---ccHHHHHHHHHhcccccCCCHHHHHHHHHH
Confidence 6899999999999999999999997 63 23567999999999764 35677676654322 234454
Q ss_pred HH------HHHHHHHHH---Hh-cC--CCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCC
Q 012135 290 YV------FVTRVMQER---ES-SG--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIP 357 (470)
Q Consensus 290 ~F------la~R~~ql~---~~-~~--~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkP 357 (470)
.| +++|.+++. .. .+ ..+.++|+||+++|+..+|..+.|+.|.++..+ +.+++..+. .+ .|
T Consensus 330 ~FA~Pfl~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e---~~~lL~~~~--~~--~P 402 (580)
T PHA03132 330 KFATPFRALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSH---FIQLLSTFR--AH--EG 402 (580)
T ss_pred HHhhHHHHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHH---HHHHHHHhc--cc--CC
Confidence 44 468877753 22 11 346799999999999888988888877665332 222322221 12 69
Q ss_pred cEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHh
Q 012135 358 DGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHEN 399 (470)
Q Consensus 358 DLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~ 399 (470)
|++|||+++++++++||++|+|.+|..++.+||++|++.|..
T Consensus 403 DLiIyLdv~pe~alkRIkkRgR~~E~~IdleYL~rLre~Y~~ 444 (580)
T PHA03132 403 DVIVLLKLNSEENLRRVKKRGRKEEKGINLTYLKELNWAYHA 444 (580)
T ss_pred CEEEEEeCCHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHH
Confidence 999999999999999999999998887789999999987665
No 10
>PLN02924 thymidylate kinase
Probab=99.89 E-value=5.4e-22 Score=192.20 Aligned_cols=192 Identities=14% Similarity=0.188 Sum_probs=134.8
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCce-EeccCCccccccCCCCccchhhhhhcCCCCC-chHHHHHHHH
Q 012135 216 PAPKKRITFCVEGNISVGKTTFLQRIANETLELRDLV-EIVPEPIDKWQDVGPDHFNILGAYYDAPERY-AYTFQNYVFV 293 (470)
Q Consensus 216 ~~~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~-Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~-af~~Ql~Fla 293 (470)
.+.+++++|+|||+||||||||++.|+++ |...++. ..++||... . ..+..++.++.+.... .....++|++
T Consensus 11 ~~~~~g~~IviEGiDGsGKsTq~~~L~~~-l~~~g~~v~~~~ep~~~-~----~~g~~ir~~l~~~~~~~~~~~~llf~a 84 (220)
T PLN02924 11 SVESRGALIVLEGLDRSGKSTQCAKLVSF-LKGLGVAAELWRFPDRT-T----SVGQMISAYLSNKSQLDDRAIHLLFSA 84 (220)
T ss_pred CcCCCCeEEEEECCCCCCHHHHHHHHHHH-HHhcCCCceeeeCCCCC-C----hHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 35578999999999999999999999997 7766543 467787421 1 1234566666443222 3445567899
Q ss_pred HHHHHHHHhcC--CCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHH
Q 012135 294 TRVMQERESSG--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCH 371 (470)
Q Consensus 294 ~R~~ql~~~~~--~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~l 371 (470)
+|++|.....+ ..+.+||+||+++|+ .+|+... ..+. +|...+...+| .||++||||+||++++
T Consensus 85 dR~~~~~~I~pal~~g~vVI~DRy~~S~------~ayq~~~--g~~~----~~~~~~~~~~~--~PDlvi~Ld~~~~~a~ 150 (220)
T PLN02924 85 NRWEKRSLMERKLKSGTTLVVDRYSYSG------VAFSAAK--GLDL----EWCKAPEVGLP--APDLVLYLDISPEEAA 150 (220)
T ss_pred HHHHHHHHHHHHHHCCCEEEEccchhHH------HHHHHhc--CCCH----HHHHHHHhCCC--CCCEEEEEeCCHHHHH
Confidence 99988643321 235688888888776 3344211 1222 23444555666 8999999999999999
Q ss_pred HHHHHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhhhhHH
Q 012135 372 KRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMH 442 (470)
Q Consensus 372 eRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~~L~ 442 (470)
+|+..++..+| ..+|++++++.|..+.. ..+.+||++. +.+++.+.|++.|.+.+.
T Consensus 151 ~R~~~~~~~~E---~~~~~~rv~~~Y~~la~----~~~~vIDa~~--------sieeV~~~I~~~I~~~l~ 206 (220)
T PLN02924 151 ERGGYGGERYE---KLEFQKKVAKRFQTLRD----SSWKIIDASQ--------SIEEVEKKIREVVLDTVQ 206 (220)
T ss_pred HHhccCccccc---cHHHHHHHHHHHHHHhh----cCEEEECCCC--------CHHHHHHHHHHHHHHHHH
Confidence 99765443333 57999999999999864 3578888875 779999999998887665
No 11
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=99.88 E-value=3.2e-22 Score=197.96 Aligned_cols=209 Identities=21% Similarity=0.306 Sum_probs=154.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCceEe------ccCCccccccCC---CC--ccchhhhhhcCCCC-CchHH
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELRDLVEI------VPEPIDKWQDVG---PD--HFNILGAYYDAPER-YAYTF 287 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Ev------v~EPv~~W~~i~---~~--~~~lL~~fY~dp~r-~af~~ 287 (470)
+.++|+|||+||||||+|+|.||++ |++..+.++ +.--+..-+++. |. ..+-+++||.||.. .++.+
T Consensus 70 nSkvI~VeGnI~sGK~klAKelAe~-Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~ 148 (393)
T KOG3877|consen 70 NSKVIVVEGNIGSGKTKLAKELAEQ-LGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAM 148 (393)
T ss_pred cceEEEEeCCcccCchhHHHHHHHH-hCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHH
Confidence 5789999999999999999999998 898765432 110011111111 11 12347899999964 58889
Q ss_pred HHHHHHHHHHHHHHhc---CCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEe
Q 012135 288 QNYVFVTRVMQERESS---GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLR 364 (470)
Q Consensus 288 Ql~Fla~R~~ql~~~~---~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLd 364 (470)
|..++..|+.|+.++. ...++.|+.+|+++|| +||..+++.+|++...-+..|..+-.....++ +.|++|||||
T Consensus 149 Q~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SD-FVF~eAM~~qgyi~~~~~~hYnevr~nti~~l--l~PHLViYld 225 (393)
T KOG3877|consen 149 QDRIYNCRFDQYLDALAHILNTGQGVVLERSPHSD-FVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQL--LWPHLVIYLD 225 (393)
T ss_pred HHHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchh-HHHHHHHHhcCcchhHHHHHHHHHHhhhhhhh--cCccEEEEEc
Confidence 9999999999986652 3457899999999999 68999999999999888888887765544444 5899999999
Q ss_pred CCHHHHHHHHHHhccccccCC-cHHHHHHHHHHHHhhcCc-CCC-CC-------------eEEEEccCCCcccCCCCchH
Q 012135 365 ASPDTCHKRMMLRKRAEEGGV-SLDYLRSLHEKHENWLFP-FES-GN-------------HGVLAVSKLPLHIDNGLHPD 428 (470)
Q Consensus 365 a~pEv~leRI~kRgR~~E~~i-~~eYLe~L~e~Ye~w~~~-~~~-~~-------------v~VIDvd~lD~~~~~~~~ee 428 (470)
+|.+.++++|++||.+.|..+ +..||+.+++.|..-+.+ +.. .. ..|-|+.++||+..++...+
T Consensus 226 ~Pv~~v~~~Ik~rg~~~Eik~~s~aYL~diE~~YK~~fL~e~s~h~eiL~Ydwt~~gdt~~VVEDIErldfd~few~~~d 305 (393)
T KOG3877|consen 226 TPVNKVLENIKRRGNTDEIKTVSEAYLKDIEESYKDSFLREYSNHSEILAYDWTKPGDTDAVVEDIERLDFDFFEWHSGD 305 (393)
T ss_pred CCcHHHHHHHHhcCCCcceeehhHHHHHHHHHHHHHHHHHHHhhhhheeeeecccCCCchhHHHhhhhhccccccccccc
Confidence 999999999999999888743 468999999999985332 221 12 23345666777766655555
Q ss_pred HHHH
Q 012135 429 IRDR 432 (470)
Q Consensus 429 v~d~ 432 (470)
+.+.
T Consensus 306 ~~~l 309 (393)
T KOG3877|consen 306 VMEL 309 (393)
T ss_pred hHhh
Confidence 5544
No 12
>PRK13973 thymidylate kinase; Provisional
Probab=99.88 E-value=1.5e-21 Score=187.11 Aligned_cols=198 Identities=13% Similarity=0.065 Sum_probs=131.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCc-eEeccCCccccccCCCCccchhhhhhcCC--CCCc-hHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAYYDAP--ERYA-YTFQNYVFVT 294 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~-~Evv~EPv~~W~~i~~~~~~lL~~fY~dp--~r~a-f~~Ql~Fla~ 294 (470)
|+|++|+|||+||||||||++.|+++ |...++ +..++||.+. ..+..++.++.+. ..+. ....++|+++
T Consensus 1 m~g~~IviEG~dGsGKtTq~~~l~~~-l~~~g~~~~~~~~p~~~------~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~ 73 (213)
T PRK13973 1 MRGRFITFEGGEGAGKSTQIRLLAER-LRAAGYDVLVTREPGGS------PGAEAIRHVLLSGAAELYGPRMEALLFAAA 73 (213)
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH-HHHCCCeEEEEECCCCC------chHHHHHHHHcCCCccCCCHHHHHHHHHHH
Confidence 67899999999999999999999998 755544 3468898642 2345666666532 2333 3344678889
Q ss_pred HHHHHHHhc---CCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHH
Q 012135 295 RVMQERESS---GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCH 371 (470)
Q Consensus 295 R~~ql~~~~---~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~l 371 (470)
|.+++.... ...+.+||+||+++|. .+|+. .-...+.+....+.... ...+ .||++|||++|+++++
T Consensus 74 r~~~~~~~i~~~l~~g~~Vi~DRy~~S~------~ayq~-~~~~~~~~~~~~l~~~~-~~~~--~PD~vi~Ldv~~e~~~ 143 (213)
T PRK13973 74 RDDHVEEVIRPALARGKIVLCDRFIDST------RAYQG-VTGNVDPALLAALERVA-INGV--MPDLTLILDIPAEVGL 143 (213)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcchhhhH------HHHcc-cccCCCHHHHHHHHHHH-hCCC--CCCEEEEEeCCHHHHH
Confidence 998865421 1234677777776665 44542 11112222222222121 1233 8999999999999999
Q ss_pred HHHHHhccccc--c--CCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhhhhHH
Q 012135 372 KRMMLRKRAEE--G--GVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMH 442 (470)
Q Consensus 372 eRI~kRgR~~E--~--~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~~L~ 442 (470)
+|+.+|++..+ . ..+.+|++++.+.|......+. ..+.+||++. +.+++.++|...+...+.
T Consensus 144 ~Rl~~R~~~~~~~~~e~~~~~~~~~~~~~y~~l~~~~~-~~~~~Ida~~--------~~e~V~~~I~~~i~~~~~ 209 (213)
T PRK13973 144 ERAAKRRGSDTPDRFEKEDLAFHEKRREAFLQIAAQEP-ERCVVIDATA--------SPEAVAAEIWAAVDQRLL 209 (213)
T ss_pred HHHHhccCCCccCchhhchHHHHHHHHHHHHHHHHhCC-CcEEEEcCCC--------CHHHHHHHHHHHHHHHHh
Confidence 99999975321 1 1246899999999999775443 3578888876 678888888888776554
No 13
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.87 E-value=4.7e-21 Score=179.03 Aligned_cols=195 Identities=16% Similarity=0.091 Sum_probs=125.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCC-ceEeccCCccccccCCCCccchhhhhhcC-CCC-CchHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELRD-LVEIVPEPIDKWQDVGPDHFNILGAYYDA-PER-YAYTFQNYVFVTR 295 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~-~~Evv~EPv~~W~~i~~~~~~lL~~fY~d-p~r-~af~~Ql~Fla~R 295 (470)
|++++|+|||++||||||+++.|+++ +...+ ....+.||.+.|. +..+..+..+ ... ..+...++|+++|
T Consensus 1 ~~~~~I~ieG~~gsGKsT~~~~L~~~-l~~~~~~~~~~~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~r 73 (205)
T PRK00698 1 MRGMFITIEGIDGAGKSTQIELLKEL-LEQQGRDVVFTREPGGTPL------GEKLRELLLDPNEEMDDKTELLLFYAAR 73 (205)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH-HHHcCCceeEeeCCCCChH------HHHHHHHHhccccCCCHHHHHHHHHHHH
Confidence 47899999999999999999999997 65433 2345677765432 2233334332 111 1233445577888
Q ss_pred HHHHHHhc---CCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHH
Q 012135 296 VMQERESS---GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHK 372 (470)
Q Consensus 296 ~~ql~~~~---~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~le 372 (470)
+.++.... ...+.++|+||+++|+ .+|+...+ +.+...+..+...+. ..+ .||++|||++|++++++
T Consensus 74 ~~~~~~~i~~~l~~g~~vi~DR~~~s~------~~~~~~~~-~~~~~~~~~l~~~~~-~~~--~pd~~i~l~~~~~~~~~ 143 (205)
T PRK00698 74 AQHLEEVIKPALARGKWVISDRFIDSS------LAYQGGGR-GLDIDLLLALNDFAL-GGF--RPDLTLYLDVPPEVGLA 143 (205)
T ss_pred HHHHHHHHHHHHHCCCEEEECCchhHH------HHHCCCCC-CCCHHHHHHHHHHHh-CCC--CCCEEEEEeCCHHHHHH
Confidence 87765321 1224578888877765 34443221 223334444333322 224 79999999999999999
Q ss_pred HHHHhccccc-cCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhhh
Q 012135 373 RMMLRKRAEE-GGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGP 439 (470)
Q Consensus 373 RI~kRgR~~E-~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~ 439 (470)
|+.+|+.... ...+.+|++++++.|+.+...+. ..+.+||++. +.+++.++|.+.|.+
T Consensus 144 Rl~~R~~~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~Id~~~--------~~e~v~~~i~~~i~~ 202 (205)
T PRK00698 144 RIRARGELDRIEQEGLDFFERVREGYLELAEKEP-ERIVVIDASQ--------SLEEVHEDILAVIKA 202 (205)
T ss_pred HHHhcCCcchhhhhhHHHHHHHHHHHHHHHHhCC-CeEEEEeCCC--------CHHHHHHHHHHHHHH
Confidence 9999984211 12357999999999999876543 4578888875 567888887776654
No 14
>PRK13974 thymidylate kinase; Provisional
Probab=99.86 E-value=1.3e-20 Score=180.36 Aligned_cols=194 Identities=15% Similarity=0.075 Sum_probs=131.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCc------eEeccCCccccccCCCCccchhhhhhcCCC----CCchHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDL------VEIVPEPIDKWQDVGPDHFNILGAYYDAPE----RYAYTFQ 288 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~------~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~----r~af~~Q 288 (470)
|++.+|+|||++|||||||++.|+++ |...+. +..++||.+.+ .+..++.+..+.. .......
T Consensus 1 m~g~~i~~eG~dGsGKsT~~~~l~~~-l~~~g~~~~~~~~~~~~~p~~~~------~g~~ir~~l~~~~~~~~~~~~~~~ 73 (212)
T PRK13974 1 MKGKFIVLEGIDGCGKTTQIDHLSKW-LPSSGLMPKGAKLIITREPGGTL------LGKSLRELLLDTSKDNSPSPLAEL 73 (212)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-HHhcCccccCCeeeeeeCCCCCc------hHHHHHHHHcCCCcccCCCHHHHH
Confidence 46899999999999999999999997 665432 23467886542 2457777775332 1234566
Q ss_pred HHHHHHHHHHHHHh-c--CCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeC
Q 012135 289 NYVFVTRVMQERES-S--GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRA 365 (470)
Q Consensus 289 l~Fla~R~~ql~~~-~--~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda 365 (470)
++|+++|++|+... . ...+.++|+||+++ +..+|+ |.-...+.+++..+...+.. .+.||++|||++
T Consensus 74 llf~adr~~~~~~~i~~~l~~g~~Vi~DRy~~------S~~ay~-g~~r~~~~~~~~~l~~~~~~---~~~pd~~i~ld~ 143 (212)
T PRK13974 74 LLYAADRAQHVSKIIRPALENGDWVISDRFSG------STLAYQ-GYGRGLDLELIKNLESIATQ---GLSPDLTFFLEI 143 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEcCchh------hHHHHc-cccCCCCHHHHHHHHHHHhC---CCCCCEEEEEeC
Confidence 78899999887542 1 12245666666555 445564 33233344445554432221 237999999999
Q ss_pred CHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhhhh
Q 012135 366 SPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPH 440 (470)
Q Consensus 366 ~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~~ 440 (470)
|++++++|+..|+.+.......+|++++.+.|+.+... ..+.+||++. +.+++.+.|.+.+.+.
T Consensus 144 ~~~~~~~R~~~R~dD~~e~~~~~y~~~v~~~y~~y~~~---~~~~~Ida~~--------~~eeV~~~I~~~l~~~ 207 (212)
T PRK13974 144 SVEESIRRRKNRKPDRIEAEGIEFLERVAEGFALIAEE---RNWKVISADQ--------SIETISNEIKETLLNN 207 (212)
T ss_pred CHHHHHHHHHhcccCchhhhhHHHHHHHHHHHHHHHhc---CCEEEEeCCC--------CHHHHHHHHHHHHHHH
Confidence 99999999998865422223468999999999987654 3578888885 5688888887777653
No 15
>PRK13975 thymidylate kinase; Provisional
Probab=99.85 E-value=3.1e-20 Score=173.18 Aligned_cols=188 Identities=16% Similarity=0.111 Sum_probs=125.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCCCCccchhhhhhcCCCCCchHHHHHHHHHHHHHHH
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQER 300 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~Fla~R~~ql~ 300 (470)
+++|+|||++||||||+++.|+++ |+.. .+.+|.+. ..+..++.++..........+++|+++|+++..
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~-l~~~----~~~~~~~~------~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~ 70 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEK-LNAF----WTCEPTDG------KIGKLIREILSGSKCDKETLALLFAADRVEHVK 70 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-hCCC----eeECCCCC------hHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999997 7643 23345432 123456666654333345678889899987754
Q ss_pred HhcC-CCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHHHHHHhcc
Q 012135 301 ESSG-GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRKR 379 (470)
Q Consensus 301 ~~~~-~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~leRI~kRgR 379 (470)
...+ -....+++||+++|+ .+|+.+...+.+ |...++..++ .||++|||++|++++++|+.+|++
T Consensus 71 ~i~~~~~~~~vi~DRy~~S~------~a~~~~~g~~~~------~~~~~~~~~~--~pd~vi~L~~~~e~~~~Rl~~r~~ 136 (196)
T PRK13975 71 EIEEDLKKRDVVCDRYVYSS------IAYQSVQGIDED------FIYSINRYAK--KPDLVFLLDVDIEEALKRMETRDK 136 (196)
T ss_pred HHHHHHcCCEEEEECchhHH------HHHhcccCCCHH------HHHHHHhCCC--CCCEEEEEcCCHHHHHHHHhccCc
Confidence 3321 112456777776665 345543211222 2222333344 799999999999999999999985
Q ss_pred ccccCCcHHHHHHHHHHHHhhcCc--C-CCCCeEEEEccCCCcccCCCCchHHHHHHHHhhhhhHH
Q 012135 380 AEEGGVSLDYLRSLHEKHENWLFP--F-ESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMH 442 (470)
Q Consensus 380 ~~E~~i~~eYLe~L~e~Ye~w~~~--~-~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~~L~ 442 (470)
+. ....+|++++++.|.++... + ....+.+||++.. +++++.++|.+.+..|+-
T Consensus 137 ~~--~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~Id~~~~-------~~eev~~~I~~~i~~~~~ 193 (196)
T PRK13975 137 EI--FEKKEFLKKVQEKYLELANNEKFMPKYGFIVIDTTNK-------SIEEVFNEILNKIKDKIP 193 (196)
T ss_pred cc--cchHHHHHHHHHHHHHHHhhcccCCcCCEEEEECCCC-------CHHHHHHHHHHHHHHhCC
Confidence 32 23468999999999998762 1 1235788998743 458888888877776653
No 16
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.84 E-value=4.8e-20 Score=171.81 Aligned_cols=187 Identities=16% Similarity=0.146 Sum_probs=120.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCc-eEeccCCccccccCCCCccchhhhh--hcCCCCCch-HHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAY--YDAPERYAY-TFQNYVFVT 294 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~-~Evv~EPv~~W~~i~~~~~~lL~~f--Y~dp~r~af-~~Ql~Fla~ 294 (470)
|++++|+|||++||||||++++|+++ ++..++ +..+.+|.+. ..+..++.+ +..+..+.. ..+++|+++
T Consensus 1 ~~g~~IvieG~~GsGKsT~~~~L~~~-l~~~g~~v~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~ 73 (195)
T TIGR00041 1 MRGMFIVIEGIDGAGKTTQANLLKKL-LQENGYDVLFTREPGGT------PIGEKIRELLLNENDEPLTDKAEALLFAAD 73 (195)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH-HHHcCCeEEEEeCCCCC------hHHHHHHHHHcCCCccCCCHHHHHHHHHHH
Confidence 46899999999999999999999997 766543 2345566322 112344444 222333332 235567777
Q ss_pred HHHHHHHh---cCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHH
Q 012135 295 RVMQERES---SGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCH 371 (470)
Q Consensus 295 R~~ql~~~---~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~l 371 (470)
|..+..+. ....+.++|+||+++|+ .+|+. .....++.++.. +...++..+||++|||++|+++++
T Consensus 74 r~~~~~~~i~~~l~~~~~VI~DR~~~s~------~ay~~-~~~~~~~~~~~~----l~~~~~~~~~d~~i~l~~~~~~~~ 142 (195)
T TIGR00041 74 RHEHLEDKIKPALAEGKLVISDRYVFSS------IAYQG-GARGIDEDLVLE----LNEDALGDMPDLTIYLDIDPEVAL 142 (195)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcccHH------HHHcc-ccCCCCHHHHHH----HHHHhhCCCCCEEEEEeCCHHHHH
Confidence 76554321 11224678888887776 23432 122333333333 333333114999999999999999
Q ss_pred HHHHHhccc-cccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHH
Q 012135 372 KRMMLRKRA-EEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRV 433 (470)
Q Consensus 372 eRI~kRgR~-~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V 433 (470)
+|+..|++. .+.....+|++++++.|..++.+ ..++.+||++. +++++.++|
T Consensus 143 ~R~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~--~~~~~~id~~~--------~~e~v~~~i 195 (195)
T TIGR00041 143 ERLRKRGELDREEFEKLDFFEKVRQRYLELADK--EKSIHVIDATN--------SVEEVEQDI 195 (195)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHcC--CCcEEEEeCCC--------CHHHHHhhC
Confidence 999999763 22234578999999999999986 34789999885 567666553
No 17
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.84 E-value=1.1e-19 Score=167.33 Aligned_cols=191 Identities=17% Similarity=0.126 Sum_probs=125.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCCCc-eEeccCCccccccCCCCccchhhhhhcCCC--CCch-HHHHHHHHHHHH
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAYYDAPE--RYAY-TFQNYVFVTRVM 297 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~-~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~--r~af-~~Ql~Fla~R~~ 297 (470)
|+|+|||++||||||+++.|+++ +...++ +..+.+|.+.|. ++.++.++.++. .+.. ...++++++|..
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~-l~~~g~~v~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 73 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAER-LEARGYEVVLTREPGGTPI------GEAIRELLLDPEDEKMDPRAELLLFAADRAQ 73 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HHHcCCeEEEEeCCCCCch------HHHHHHHHhccCccCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999997 754443 345667754321 357777876542 2333 334456677776
Q ss_pred HHHHhc---CCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHHHH
Q 012135 298 QERESS---GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRM 374 (470)
Q Consensus 298 ql~~~~---~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~leRI 374 (470)
+..+.. ...+.++++||+++|+. +| +..... .....+..+ ..+...++ .||++|||++|++++++|+
T Consensus 74 ~~~~~~~~~~~~~~~vi~DR~~~s~~-~~-----~~~~~~-~~~~~~~~l-~~~~~~~~--~~~~~i~l~~~~~~~~~R~ 143 (200)
T cd01672 74 HVEEVIKPALARGKIVLSDRFVDSSL-AY-----QGAGRG-LGEALIEAL-NDLATGGL--KPDLTILLDIDPEVGLARI 143 (200)
T ss_pred HHHHHHHHHHhCCCEEEECCCcchHH-Hh-----CccccC-CCHHHHHHH-HHHHhCCC--CCCEEEEEeCCHHHHHHHH
Confidence 654321 12356888888888773 23 221111 111112211 12222333 8999999999999999999
Q ss_pred HHhcccccc-CCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhh
Q 012135 375 MLRKRAEEG-GVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDG 438 (470)
Q Consensus 375 ~kRgR~~E~-~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~ 438 (470)
.+|++..+. ....+|+++++..|......+. .++.+||++. +.+++.+.|.+.|.
T Consensus 144 ~~R~~~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~id~~~--------~~e~i~~~i~~~i~ 199 (200)
T cd01672 144 EARGRDDRDEQEGLEFHERVREGYLELAAQEP-ERIIVIDASQ--------PLEEVLAEILKAIL 199 (200)
T ss_pred HhcCCcchhhhhhHHHHHHHHHHHHHHHHhCC-CeEEEEeCCC--------CHHHHHHHHHHHHh
Confidence 999875443 3457899999999998877653 3678888875 56778787776654
No 18
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.82 E-value=1.9e-19 Score=167.31 Aligned_cols=180 Identities=18% Similarity=0.218 Sum_probs=118.2
Q ss_pred EEcCCCCcHHHHHHHHHHhhhcCCCce-EeccCCccccccCCCCccchhhhhhcCCCCC-chHHHHHHHHHHHHHHHHhc
Q 012135 226 VEGNISVGKTTFLQRIANETLELRDLV-EIVPEPIDKWQDVGPDHFNILGAYYDAPERY-AYTFQNYVFVTRVMQERESS 303 (470)
Q Consensus 226 IEG~dGSGKSTLaKlLAk~~L~~~~~~-Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~-af~~Ql~Fla~R~~ql~~~~ 303 (470)
|||+||||||||++.|+++ |...++. ..+.+|.+. ..+..++.+....... .....++|+++|..+.....
T Consensus 1 ~EGiDGsGKtT~~~~L~~~-l~~~~~~~~~~~~~~~~------~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I 73 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEA-LKEKGYKVIITFPPGST------PIGELIRELLRSESELSPEAEALLFAADRAWHLARVI 73 (186)
T ss_dssp EEESTTSSHHHHHHHHHHH-HHHTTEEEEEEESSTSS------HHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTH
T ss_pred CCCCCCCCHHHHHHHHHHH-HHHcCCcccccCCCCCC------hHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999997 7766643 234555432 1234566666533333 34566778899976654321
Q ss_pred ---CCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHHHHHHhcc-
Q 012135 304 ---GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRKR- 379 (470)
Q Consensus 304 ---~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~leRI~kRgR- 379 (470)
...+.++|+||+++|. ++|+.. ....+......+...+. .+ +||++|||+++|+++++|+.+|+.
T Consensus 74 ~~~l~~g~~VI~DRy~~S~------lay~~~-~~~~~~~~~~~~~~~~~--~~--~PDl~~~Ldv~pe~~~~R~~~r~~~ 142 (186)
T PF02223_consen 74 RPALKRGKIVICDRYIYST------LAYQGA-KGELDIDWIWRLNKDIF--LP--KPDLTFFLDVDPEEALKRIAKRGEK 142 (186)
T ss_dssp HHHHHTTSEEEEESEHHHH------HHHHTT-TTSSTHHHHHHHHHHHH--TT--E-SEEEEEECCHHHHHHHHHHTSST
T ss_pred HHHHcCCCEEEEechhHHH------HHhCcc-ccCCcchhhhHHHHHhc--CC--CCCEEEEEecCHHHHHHHHHcCCcc
Confidence 1235678888877665 445432 11123333334333321 12 899999999999999999999987
Q ss_pred ccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHH
Q 012135 380 AEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRV 433 (470)
Q Consensus 380 ~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V 433 (470)
..+.....+|++++++.|.+.+. ...++.+||++. +.+++.++|
T Consensus 143 ~~~~~~~~~~~~~~~~~y~~l~~--~~~~~~iid~~~--------~~e~v~~~I 186 (186)
T PF02223_consen 143 DDEEEEDLEYLRRVREAYLELAK--DPNNWVIIDASR--------SIEEVHEQI 186 (186)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHH--TTTTEEEEETTS---------HHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHc--CCCCEEEEECCC--------CHHHHHhhC
Confidence 22223457999999999999987 345799999996 556666554
No 19
>PHA03136 thymidine kinase; Provisional
Probab=99.80 E-value=3.5e-19 Score=183.88 Aligned_cols=175 Identities=15% Similarity=0.167 Sum_probs=128.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCCCCccchhhhhhcCCC-----CCc---------h
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPE-----RYA---------Y 285 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~-----r~a---------f 285 (470)
+-..|.|||++|+||||+++.|.+. .+..+-+.+++||+..|++++. +.+.+..+|.-.. ..+ .
T Consensus 35 ~~~rvyieG~~gvGKTT~~~~l~~~-~~~~~~vl~v~EPm~yW~~v~~-~~d~i~~Iy~~q~r~~~G~~s~~~a~~~~~~ 112 (378)
T PHA03136 35 RLVLLYLDGPFGTGKTTTAKLLMEM-PDTLAARLYLAEPMAAWRNHFG-GADMIKEINEIQELKARGDIACRDAKAIAAA 112 (378)
T ss_pred eeEEEEEECCCcCCHHHHHHHHHhc-cccCCCeeeecCchHHHHhhcC-cchHHHHHHHHHHHHhcCCcchhhhHHHHHH
Confidence 4568999999999999999999973 3443334578999999999852 3567888884321 111 1
Q ss_pred HHHHHHHHH------HHHHHHHhc--------CCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhc
Q 012135 286 TFQNYVFVT------RVMQERESS--------GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSV 351 (470)
Q Consensus 286 ~~Ql~Fla~------R~~ql~~~~--------~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~ 351 (470)
..|+.|..- ++....... .....++++||++++..++|..+.|..|.|+..++..+..+ ...
T Consensus 113 ~~Q~~fa~P~~~~~~~~~~~~g~~~~~~~~~~~~pd~~~i~DRhpisA~lcFp~~~~~lG~lsy~~l~~ll~~----~~~ 188 (378)
T PHA03136 113 ELQLQFAAPLRIFHHVASNLFGSERCYSAAARGPDDILFIIDRHPLAACLCFPAAQFLSGALEFGDLIALISG----IPD 188 (378)
T ss_pred HHHHHhccHHHHHHHHHHHhhccccccCCCCCCCCCeEEEeecCcchHhhcCCHHHHhcCCCCHHHHHHHHhh----CcC
Confidence 156655432 111111101 11235899999999999999999999999986654443322 224
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCc
Q 012135 352 LPGLIPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFP 403 (470)
Q Consensus 352 Lp~lkPDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~ 403 (470)
+| .||++|||+++++++++||++|||+.| .++.+||+.|++.|+.|+..
T Consensus 189 ~p--~pD~IIyL~l~~e~~~~RI~kRgR~~E-~I~~~YL~~L~~~Y~~~~nt 237 (378)
T PHA03136 189 EP--HGGNIVIMDLDECEHAERIIARGRPGE-AIDVRFLCALHNIYICFMNT 237 (378)
T ss_pred CC--CCCEEEEEeCCHHHHHHHHHHcCCCcc-CCCHHHHHHHHHHHHHHHHH
Confidence 55 799999999999999999999999999 89999999999999997654
No 20
>PHA03138 thymidine kinase; Provisional
Probab=99.75 E-value=7.1e-18 Score=172.17 Aligned_cols=178 Identities=14% Similarity=0.224 Sum_probs=128.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCC-ceEeccCCccccccCCCCccchhhhhh-------------cCCCCC
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANETLELRD-LVEIVPEPIDKWQDVGPDHFNILGAYY-------------DAPERY 283 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~-~~Evv~EPv~~W~~i~~~~~~lL~~fY-------------~dp~r~ 283 (470)
++.-..|.|||++|+||||+++.+.+. +.... .+.+++||+..|++++ +.+.+..+| +|+.+|
T Consensus 9 ~~~~~riYleG~~GvGKTT~~~~~l~~-~~~~~~~vl~vpEPm~yWr~v~--~~d~l~~iY~~q~r~~~G~~S~~da~~~ 85 (340)
T PHA03138 9 KMCILRIYLDGAFGIGKTTAAEAFLHG-FAINPNRIFFIGEPLMYWRNLA--GDDAICGIYGTQTRRKNGDISDEDAQRL 85 (340)
T ss_pred CccEEEEEEECCCCcCHHhHHHHHHHh-hhcCCCceEEeeCchHHHHHhc--cccHHHHHHHHhhhhhcccccccchhHH
Confidence 456788999999999999999977654 33222 2568999999999985 467999999 788889
Q ss_pred chHHHHHHHHH------HHHHHHHhc-------CCCCCeeee--cceEeechhHHHHHHHHhccCChhhHHHHHhhHHHH
Q 012135 284 AYTFQNYVFVT------RVMQERESS-------GGIKPLRLM--ERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPV 348 (470)
Q Consensus 284 af~~Ql~Fla~------R~~ql~~~~-------~~~~~ivI~--DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l 348 (470)
.+.+|.+|..- +........ ....+.+++ ||+++|..++|..+.|..|.|+..++.... +.
T Consensus 86 ~a~~Q~~f~tP~~~~~~~~~~~l~~~~~~~~~~~~~~p~~ili~DRHp~SA~vCFP~ary~~G~ls~~~l~~L~----~~ 161 (340)
T PHA03138 86 TAHFQGLFCSPHAILHAKILALMDQNPNDLALKFFKEPVAIFLSDRHPIASNICFPISRYLVGDMSPAALPGFL----FA 161 (340)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhccccCccccCCCCCCeEEEEeccccchhhHHHHHHHHHcCCCCHHHHHHHH----Hh
Confidence 99999988432 211111111 122355666 999999999999999999999987765442 12
Q ss_pred hhcCCCCCCcEEEEEeCCHHHHHHHHHHhccccccC-Cc---------------HHHHHHHHHHHHhhcCcC
Q 012135 349 VSVLPGLIPDGFIYLRASPDTCHKRMMLRKRAEEGG-VS---------------LDYLRSLHEKHENWLFPF 404 (470)
Q Consensus 349 ~~~Lp~lkPDLvIyLda~pEv~leRI~kRgR~~E~~-i~---------------~eYLe~L~e~Ye~w~~~~ 404 (470)
....| .--|++||+. +.+++++||++|+|+.|.. +. ..|++..++-+++|..-.
T Consensus 162 ~p~~~-~g~nLVv~~l-~~~E~~~RL~~R~R~gE~~D~~~l~alrnvY~~L~NT~~yL~~~~~w~~dW~~l~ 231 (340)
T PHA03138 162 LPAEP-EGTNLIVCTV-SLPNHLSRISKRARPGEIIDLPFILVLRNVYIMLINTIIFLKAKNDWHADWFKLP 231 (340)
T ss_pred cCCCC-CCCcEEEEeC-CcHHHHHHHHhcCCCccccchHHHHHHHHHHHHHHHHHHHHHhcChHhHHHhhCc
Confidence 11111 1336777766 5445999999999999872 34 578888888888886643
No 21
>PHA03134 thymidine kinase; Provisional
Probab=99.60 E-value=5.8e-15 Score=150.83 Aligned_cols=172 Identities=17% Similarity=0.243 Sum_probs=123.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCCCCccchhhhhhcCCCC-----C--------chH
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPER-----Y--------AYT 286 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r-----~--------af~ 286 (470)
.-..|.|||..|+||||.++.|++. ......+..++||+..|+.++ +.+.+...|+-..+ . -..
T Consensus 12 ~~~rvYlDG~~GvGKTT~~~~l~~~-~~~~~~vl~~pEPM~YWr~~f--~~d~i~~Iy~~q~r~~~G~~s~~~aa~~~a~ 88 (340)
T PHA03134 12 RIVRIYLDGAYGIGKSTTGRVMASA-ASGGGPTLYFPEPMAYWRTLF--ETDVVSGIYDAQNRKQQGSLAAEDAAGITAH 88 (340)
T ss_pred cEEEEEEeCCCcCCHHHHHHHHHHh-ccCCCceEEecCcHHHHHHHh--hhhHHHHHHHHHhHHhccCcchhHHHHHHHH
Confidence 3468899999999999999999974 122222567999999999885 34567777743221 1 122
Q ss_pred HHHHHHHH------HHHHHHHh---cC--CCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCC
Q 012135 287 FQNYVFVT------RVMQERES---SG--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGL 355 (470)
Q Consensus 287 ~Ql~Fla~------R~~ql~~~---~~--~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~l 355 (470)
.|..|..- |....... .. ....++|+||+++|...+|..+.|..|.++..++. . +...+|.-
T Consensus 89 ~Q~~fatP~~~~~~~~~~~~~~~~~~~~~~pd~~vI~DRHPlsA~vcFP~ar~~~G~ls~~~~~---~----l~~~~p~~ 161 (340)
T PHA03134 89 YQARFATPYLILHDRLSTLFGPPSLARGGRPDVTLVFDRHPVASCVCFPLARYLLGDMSACALL---A----LAATLPRE 161 (340)
T ss_pred HHHHhcChHHHHHHHHHHhcCCCCCCCCCCCCeeeeeccCCCCccccchHHHHhcCCCCHHHHH---H----HHHhCCCC
Confidence 56654432 22211110 11 11358999999999999999999999999866542 1 23345422
Q ss_pred CC-cEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcC
Q 012135 356 IP-DGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLF 402 (470)
Q Consensus 356 kP-DLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~ 402 (470)
.| |.+||++++++++++||++|+|+.|. ++.+|+..|++.|..+++
T Consensus 162 ~pG~niVl~~l~~~e~~~Rl~~R~R~gE~-id~~yL~~l~n~Y~~l~n 208 (340)
T PHA03134 162 PPGGNLVVTTLNPDEHLRRLRARARIGEQ-IDAKLIAALRNVYAMLVN 208 (340)
T ss_pred CCCCeEEEEeCCHHHHHHHHHHcCCCccc-cCHHHHHHHHHHHHHHHH
Confidence 35 89999999999999999999999997 899999999999987544
No 22
>PHA03135 thymidine kinase; Provisional
Probab=99.59 E-value=3.2e-15 Score=152.89 Aligned_cols=171 Identities=19% Similarity=0.220 Sum_probs=112.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCCC-ceEeccCCccccccCCCCccchhhhhhcCCCC-----C--------ch
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELRD-LVEIVPEPIDKWQDVGPDHFNILGAYYDAPER-----Y--------AY 285 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~-~~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r-----~--------af 285 (470)
.-..|.|||++|+||||+++.|++. ...+ .+..++||+..|+.++ .+.+...|.-+.+ . -.
T Consensus 9 ~~~rIYlDG~~GvGKTT~~~~l~~~--~~~~~~vl~vpEPM~YWr~~f---~d~i~~Iy~tq~r~~~G~ls~~~as~~~~ 83 (343)
T PHA03135 9 QLIRVYLDGPFGIGKTSMLNEMPDH--SPDGVPVLKVFEPMKYWRCYF---TDLVVAVNDTPERRRRGELSLFQSSMIVA 83 (343)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHHh--cCCCCceEEecCcHHHHHHHH---HHHHHHHHHHHhhhhcCCcchhhccHHHH
Confidence 3467899999999999999999974 3332 3567899999999875 2445555532111 0 01
Q ss_pred HHHHHHH------HHHHHHHHH--h--cCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCC
Q 012135 286 TFQNYVF------VTRVMQERE--S--SGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGL 355 (470)
Q Consensus 286 ~~Ql~Fl------a~R~~ql~~--~--~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~l 355 (470)
..|.-|. .+++..... . ......++|+||+++|...+|..+.|..|.++ +..+.+++..+-...|
T Consensus 84 ~~Q~kfatP~~~~~~~l~~~~~~~~~~~~~p~~~lIfDRHPlSA~vcFPlaryl~G~ls---~~~l~sl~~~lp~~~p-- 158 (343)
T PHA03135 84 ALQAKFADPYLVFHERLSSKCHGKIGTRGNPSLILILDRHPVSATVCFPIARHLLGDCS---LEMLISSIIRLPLEPP-- 158 (343)
T ss_pred HHHHHhcchHHHHHHHHHHHhcccCCCCCCCCceEEEecCCCCCceeeehhhcccCCCC---HHHHHHHHHhCCcCCC--
Confidence 1333222 233221111 1 11123588999999999999998777777665 4445554443322222
Q ss_pred CCcEEEEEeC-CHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcC
Q 012135 356 IPDGFIYLRA-SPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLF 402 (470)
Q Consensus 356 kPDLvIyLda-~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~ 402 (470)
-+.+|.++. +++++++||++|+|+.|. .+.+||..|++.|..+++
T Consensus 159 -G~niVl~~L~~~~E~~rRl~~R~R~gE~-~d~~yL~aL~n~Y~~l~n 204 (343)
T PHA03135 159 -GCNLVITILPDEKEHVNRLSSRNRPGET-TDRNMLRALNAVYSSLVD 204 (343)
T ss_pred -CCeEEEEECCCHHHHHHHHHHcCCCccc-cCHHHHHHHHHHHHHHHH
Confidence 234555555 689999999999999998 489999999999987543
No 23
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.56 E-value=2.1e-14 Score=135.73 Aligned_cols=192 Identities=17% Similarity=0.125 Sum_probs=127.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCc-eEeccCCccccccCCCCccchhhhhhcCCCCC-chHHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAYYDAPERY-AYTFQNYVFVTRV 296 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~-~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~-af~~Ql~Fla~R~ 296 (470)
.++.+|++||.|+|||||++..|.+. +..... .+...-| +--...+++++.++.+.... .....++|-+.|+
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~-l~~~~~~~~l~~FP-----~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRw 76 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVES-LIPGLDPAELLRFP-----ERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRW 76 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHH-HHhccChHHhhhcc-----hhcccccHHHHHHHHhccCCcHHHHHHHhccchh
Confidence 47899999999999999999999986 543321 0111111 00012345677776544322 3445677889999
Q ss_pred HHHHHhc--CCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHHHH
Q 012135 297 MQERESS--GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRM 374 (470)
Q Consensus 297 ~ql~~~~--~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~leRI 374 (470)
++..... ...+..+|+|||.||.. .|+.+ .| .++++.. .....|| +||+++||+++|+. ..|.
T Consensus 77 e~~~~i~e~l~kg~~~ivDRY~~SGv-AyS~A---Kg----l~~dWc~----~pd~gL~--KPDlvlfL~v~p~~-~a~r 141 (208)
T KOG3327|consen 77 EHVSLIKEKLAKGTTLIVDRYSFSGV-AYSAA---KG----LDLDWCK----QPDVGLP--KPDLVLFLDVSPED-AARR 141 (208)
T ss_pred hHHHHHHHHHhcCCeEEEecceecch-hhhhh---cC----CCcchhh----CCccCCC--CCCeEEEEeCCHHH-HHHh
Confidence 8853321 12356799999999984 45422 23 2222222 2234677 99999999999999 4443
Q ss_pred HHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhhhhHH
Q 012135 375 MLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMH 442 (470)
Q Consensus 375 ~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~~L~ 442 (470)
..+| .|...+.++++++...|..... ....++.++|++. +.+++.+.|..+++.-+.
T Consensus 142 ggfG--~Erye~v~fqekv~~~~q~l~r-~e~~~~~~vDAs~--------sve~V~~~V~~i~e~~~~ 198 (208)
T KOG3327|consen 142 GGFG--EERYETVAFQEKVLVFFQKLLR-KEDLNWHVVDASK--------SVEKVHQQVRSLVENVLS 198 (208)
T ss_pred cCcc--hhHHHHHHHHHHHHHHHHHHHh-ccCCCeEEEecCc--------cHHHHHHHHHHHHHHhcc
Confidence 3344 4556677899999999999884 3456899999996 678888888877776554
No 24
>PF00693 Herpes_TK: Thymidine kinase from herpesvirus; InterPro: IPR001889 The thymidine kinase from Herpesviridae catalyses the reaction: ATP + THYMIDINE = ADP + THYMIDINE 5'-PHOSPHATE. The enzyme is not subject to feedback inhibition by its product and the crystal structure of the enzyme from Human herpesvirus 1 (HHV-1) has been reported [].; GO: 0004797 thymidine kinase activity, 0005524 ATP binding, 0006230 TMP biosynthetic process; PDB: 1P73_B 1P75_C 1P6X_A 1P72_A 1OSN_D 1E2J_B 1KI3_A 3RDP_B 1P7C_A 3F0T_A ....
Probab=99.40 E-value=1.5e-12 Score=130.47 Aligned_cols=160 Identities=21% Similarity=0.309 Sum_probs=105.2
Q ss_pred cCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCCCCccchhhhhhcCCC-----C--------CchHHHHHHHHH
Q 012135 228 GNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPE-----R--------YAYTFQNYVFVT 294 (470)
Q Consensus 228 G~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~-----r--------~af~~Ql~Fla~ 294 (470)
|..|+||||+++.|++. +....-+..++||+..|+.+++ .+.+...|+-.. + .-...|..|..-
T Consensus 1 G~~GvGKTT~~~~l~~~-~~~~~~vl~~pEPM~YWr~~f~--~d~i~~Iy~~~~r~~~G~~s~~~as~~~~~~Q~~fatP 77 (281)
T PF00693_consen 1 GAMGVGKTTTLKALAEA-LPAGDPVLYFPEPMAYWRTVFG--TDVIKGIYEAQKRKDRGEISSEEASAIMASCQMKFATP 77 (281)
T ss_dssp SSTTSSHHHHHHHHHHC-CTSSCCEEEE---HHHHHTCSS--SSHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHc-cCCCCCeEEecccHHHHHHHhh--HHHHHHHHHHHhHhhccCcCccHHHHHHHHHHHHhcch
Confidence 88999999999999986 4433345689999999999852 556777774221 1 123467766543
Q ss_pred HHHHHHHh-c--------C----CCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCC-CCCcEE
Q 012135 295 RVMQERES-S--------G----GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPG-LIPDGF 360 (470)
Q Consensus 295 R~~ql~~~-~--------~----~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~-lkPDLv 360 (470)
+...... . . ....++|+||+++|...+|.-+.|..|.|+-.++ +. +...+|. -..+.+
T Consensus 78 -~~~~~~~i~~~~~~~~~~~~~~~pd~~~ifDRHplAA~vcFPlary~~G~ls~~~l------i~-lla~~p~~~pG~ni 149 (281)
T PF00693_consen 78 -YLALHARISRLCGPEAVPPAGPSPDVWLIFDRHPLAATVCFPLARYLLGDLSFEDL------IS-LLATFPPEPPGTNI 149 (281)
T ss_dssp -HHHHHHHHCCTSEEEEECTTSSS-SEEEEEES-THHHHTHHHHHHHHTTSS-HHHH------HH-HHTTS----TTEEE
T ss_pred -HHHHHHHHHHhcCCccCCCCCCCCCeEEEEecchhHHHHHHHHHHHHhCCCCHHHH------HH-HHHhCCCCCCCCEE
Confidence 2211111 0 1 1244899999999999999999999999875443 22 2233432 145678
Q ss_pred EEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHh
Q 012135 361 IYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHEN 399 (470)
Q Consensus 361 IyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~ 399 (470)
|.+++++++.++||++|+|+.|. ++..|+..|+..|..
T Consensus 150 Vl~~L~~~E~~rRl~~R~R~gE~-vd~~~l~~Lr~~Y~~ 187 (281)
T PF00693_consen 150 VLMTLPEEEHLRRLKARGRPGER-VDLNYLRALRNVYHA 187 (281)
T ss_dssp EEEE--HHHHHHHHHHTSTTT-S---HHHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHcCCCccc-cCHHHHHHHHHHHHH
Confidence 88999999999999999999996 999999999999985
No 25
>PHA03133 thymidine kinase; Provisional
Probab=99.36 E-value=6.3e-12 Score=129.44 Aligned_cols=170 Identities=21% Similarity=0.261 Sum_probs=121.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCCCCccchhhhhhcCCCCC-------------chH
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERY-------------AYT 286 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~-------------af~ 286 (470)
.-.+|.|||..|+||||+++.|.+. ++..+-+..++||+..|+.++ +.+.+...|+-..+. -..
T Consensus 39 ~~~rvYlDG~~GvGKTTt~~~l~~a-~~~~~~vl~~pEPM~YWr~~f--~sd~i~~IY~tq~r~~~GeiS~~~A~~~~~s 115 (368)
T PHA03133 39 ALLRIYVDGPHGLGKTTTAAALAAA-LGRRDDIEYVPEPMAYWQVLG--GSETIARIFDAQHRLDRGEISAGEAAVAMTS 115 (368)
T ss_pred eEEEEEEeCCCcCCHHHHHHHHHHh-hCCCCCeEEecCcHHHHHHHh--hhhHHHHHHHHHHHHhccCcchhhhhhHHHH
Confidence 3468999999999999999888876 665555678999999999875 345677777432211 123
Q ss_pred HHHHHHHH------HHHHHHHhc--C------CCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcC
Q 012135 287 FQNYVFVT------RVMQERESS--G------GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVL 352 (470)
Q Consensus 287 ~Ql~Fla~------R~~ql~~~~--~------~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~L 352 (470)
.|..|..- ++....... . ....++++||+++|...||.-+.|..|.|+..++- + +...+
T Consensus 116 ~Q~kFatPy~~~~~~~~~~~g~~~~~~~~~~p~~d~~lifDRHPlAa~vcFPlary~~G~ls~~~li---s----lla~l 188 (368)
T PHA03133 116 AQVTMSTPYAVTEAAVAPHIGGELPPGHAPHPNIDLTLVFDRHPVAPLLCYPAARYLMGSLSLPAVL---S----FAALL 188 (368)
T ss_pred HHHHhcChHHHHHHHHHHHhccCCCCCCCCCCCCCeEEeecCCcCchhhhhhHHHHHcCCCCHHHHH---H----HHHhC
Confidence 56544321 221111100 1 11457899999999999999999999998754432 2 22234
Q ss_pred CC-CCCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhh
Q 012135 353 PG-LIPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENW 400 (470)
Q Consensus 353 p~-lkPDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w 400 (470)
|. -.-|.+|.+++++++.++||++|+|+.|. ++..|+..|+..|...
T Consensus 189 p~~~pG~NiVl~~L~~~E~~~RL~~R~R~gE~-~D~~~l~alrnvY~~l 236 (368)
T PHA03133 189 PPTTPGTNLVLGALPEAAHAERLAQRQRPGER-LDLAMLSAIRRVYDML 236 (368)
T ss_pred CCCCCCCEEEEEeCCHHHHHHHHHHcCCCccc-cCHHHHHHHHHHHHHH
Confidence 31 24579999999999999999999999997 8889999999998753
No 26
>PRK08233 hypothetical protein; Provisional
Probab=99.24 E-value=3.4e-10 Score=103.77 Aligned_cols=75 Identities=17% Similarity=0.057 Sum_probs=53.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhcccc---cc--CCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAE---EG--GVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIR 430 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~---E~--~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~ 430 (470)
.+|++|||++|++++++|+.+|.... +. ....+|+......|..++.+.......+||++. +.+++.
T Consensus 97 ~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~--------~~e~i~ 168 (182)
T PRK08233 97 FIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGAL--------SVEEII 168 (182)
T ss_pred HcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCCC--------CHHHHH
Confidence 46999999999999999988775321 11 113578888888999988776544567777653 457777
Q ss_pred HHHHHhhh
Q 012135 431 DRVFYLDG 438 (470)
Q Consensus 431 d~V~~~I~ 438 (470)
+.|...+.
T Consensus 169 ~~i~~~l~ 176 (182)
T PRK08233 169 NQIEEELY 176 (182)
T ss_pred HHHHHHHH
Confidence 77666554
No 27
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.23 E-value=7.7e-11 Score=110.80 Aligned_cols=84 Identities=21% Similarity=0.179 Sum_probs=62.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhcccccc---CCcHHHHHH-HHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEG---GVSLDYLRS-LHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRD 431 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~---~i~~eYLe~-L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d 431 (470)
.+|++|.|+++|+++.+|+++||.+.|+ ++..+.+.- +.++.+.| .++..||+.+. +++++.+
T Consensus 82 ~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~EA~E~~------~~v~evdtt~~-------s~ee~~~ 148 (180)
T COG1936 82 DCDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILIEAVERF------EAVIEVDTTNR-------SPEEVAE 148 (180)
T ss_pred CCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc------CceEEEECCCC-------CHHHHHH
Confidence 4799999999999999999999999887 444555543 33444443 35788998863 6799999
Q ss_pred HHHHhhhhhHHhhhhcCCeEEEecCC
Q 012135 432 RVFYLDGPHMHSSIQKVPALVLDCEP 457 (470)
Q Consensus 432 ~V~~~I~~~L~~~i~~~p~l~~d~~~ 457 (470)
.|+..|.. -++-...++|...
T Consensus 149 ~i~~ii~~-----~~~~~~g~vd~~~ 169 (180)
T COG1936 149 EIIDIIGG-----GRKKRVGVVDWLE 169 (180)
T ss_pred HHHHHHcc-----cccCCCCCcchhh
Confidence 99988885 2234666666653
No 28
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.21 E-value=5.9e-10 Score=102.95 Aligned_cols=73 Identities=8% Similarity=0.124 Sum_probs=47.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccc-cCCcHHHHHHHHHHHHhh----cCcCCC-CCeEEEEccCCCcccCCCCchHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEE-GGVSLDYLRSLHEKHENW----LFPFES-GNHGVLAVSKLPLHIDNGLHPDI 429 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E-~~i~~eYLe~L~e~Ye~w----~~~~~~-~~v~VIDvd~lD~~~~~~~~eev 429 (470)
.||++|||++|++++++|+.+|+.... ...+.+++++..+.|... +..|.. ..+.+||+++ +++++
T Consensus 103 ~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~~--------~~~~v 174 (183)
T TIGR01359 103 NFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEG--------SVEEV 174 (183)
T ss_pred CCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCC--------CHHHH
Confidence 689999999999999999999975311 112345555544566553 222222 3578899886 55677
Q ss_pred HHHHHHh
Q 012135 430 RDRVFYL 436 (470)
Q Consensus 430 ~d~V~~~ 436 (470)
.+.|.+.
T Consensus 175 ~~~i~~~ 181 (183)
T TIGR01359 175 FEDVEKI 181 (183)
T ss_pred HHHHHHH
Confidence 6666543
No 29
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.16 E-value=1.3e-09 Score=100.36 Aligned_cols=75 Identities=17% Similarity=0.121 Sum_probs=49.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhcccc--ccCCcHHHHHHHHHHHHhhc---CcCC-CCCeEEEEccCCCcccCCCCchHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAE--EGGVSLDYLRSLHEKHENWL---FPFE-SGNHGVLAVSKLPLHIDNGLHPDI 429 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~--E~~i~~eYLe~L~e~Ye~w~---~~~~-~~~v~VIDvd~lD~~~~~~~~eev 429 (470)
.||++|||++|++++++|+.+|++.. .......+.+++...|+... ..|. ...+.+||++. +++++
T Consensus 106 ~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~~~~~~~id~~~--------~~~~v 177 (188)
T TIGR01360 106 PPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYETKGKLRKINAEG--------TVDDV 177 (188)
T ss_pred CCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCC--------CHHHH
Confidence 68999999999999999999987421 11123456677766665421 2222 23567888774 56777
Q ss_pred HHHHHHhhh
Q 012135 430 RDRVFYLDG 438 (470)
Q Consensus 430 ~d~V~~~I~ 438 (470)
.+.|...+.
T Consensus 178 ~~~i~~~l~ 186 (188)
T TIGR01360 178 FLQVCTAID 186 (188)
T ss_pred HHHHHHHHh
Confidence 777766553
No 30
>PRK02496 adk adenylate kinase; Provisional
Probab=99.11 E-value=4e-09 Score=98.09 Aligned_cols=71 Identities=10% Similarity=0.068 Sum_probs=50.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHh----hcCcCCC-CCeEEEEccCCCcccCCCCchHHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHEN----WLFPFES-GNHGVLAVSKLPLHIDNGLHPDIR 430 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~----w~~~~~~-~~v~VIDvd~lD~~~~~~~~eev~ 430 (470)
.||++|+|++|++++.+|+..|++.. -..+++++..+.|.. .+..|.. +.+..||+++ +.+++.
T Consensus 107 ~~~~vi~l~~~~~~~~~Rl~~R~~~d---d~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~--------~~~~V~ 175 (184)
T PRK02496 107 SGERVVNLDVPDDVVVERLLARGRKD---DTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQ--------SVEAVT 175 (184)
T ss_pred CCCEEEEEeCCHHHHHHHHhcCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCC--------CHHHHH
Confidence 68999999999999999999998752 235677777777776 2222222 3578888886 557777
Q ss_pred HHHHHhh
Q 012135 431 DRVFYLD 437 (470)
Q Consensus 431 d~V~~~I 437 (470)
+.|...+
T Consensus 176 ~~i~~~l 182 (184)
T PRK02496 176 TELKAAL 182 (184)
T ss_pred HHHHHHh
Confidence 7765544
No 31
>PRK14532 adenylate kinase; Provisional
Probab=99.10 E-value=3.2e-09 Score=98.93 Aligned_cols=75 Identities=11% Similarity=0.011 Sum_probs=49.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHhccc--cccCCcHHHHHHHHHHHHhh---cCcCCC-CCeEEEEccCCCcccCCCCchH
Q 012135 355 LIPDGFIYLRASPDTCHKRMMLRKRA--EEGGVSLDYLRSLHEKHENW---LFPFES-GNHGVLAVSKLPLHIDNGLHPD 428 (470)
Q Consensus 355 lkPDLvIyLda~pEv~leRI~kRgR~--~E~~i~~eYLe~L~e~Ye~w---~~~~~~-~~v~VIDvd~lD~~~~~~~~ee 428 (470)
..||++|||++|++++++|+.+|... ........+.+++...|+.. ...|.. ..+..||++. ++++
T Consensus 105 ~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~--------~~ee 176 (188)
T PRK14532 105 QKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMG--------SIEA 176 (188)
T ss_pred CCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCC--------CHHH
Confidence 47999999999999999999988521 11122346777777666653 222222 2456677664 5677
Q ss_pred HHHHHHHhh
Q 012135 429 IRDRVFYLD 437 (470)
Q Consensus 429 v~d~V~~~I 437 (470)
+.+.|...+
T Consensus 177 v~~~I~~~l 185 (188)
T PRK14532 177 VAASIDAAL 185 (188)
T ss_pred HHHHHHHHH
Confidence 777766554
No 32
>PLN02200 adenylate kinase family protein
Probab=99.09 E-value=2.7e-09 Score=104.53 Aligned_cols=75 Identities=11% Similarity=0.162 Sum_probs=50.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhh----cCcCCC-CCeEEEEccCCCcccCCCCchHHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENW----LFPFES-GNHGVLAVSKLPLHIDNGLHPDIR 430 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w----~~~~~~-~~v~VIDvd~lD~~~~~~~~eev~ 430 (470)
.||++|||+++++++++|+.+|+.... ..+.+.+++..+.|... +..|.. ..+.+||+++ +++++.
T Consensus 145 ~pd~vi~Ld~~~e~~~~Rl~~R~~~r~-dd~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~--------~~eeV~ 215 (234)
T PLN02200 145 EPNVVLFFDCPEEEMVKRVLNRNQGRV-DDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVG--------TVDEIF 215 (234)
T ss_pred CCCEEEEEECCHHHHHHHHHcCcCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCC--------CHHHHH
Confidence 689999999999999999999853211 12345665555555554 222322 3578899886 567777
Q ss_pred HHHHHhhhh
Q 012135 431 DRVFYLDGP 439 (470)
Q Consensus 431 d~V~~~I~~ 439 (470)
+.|...+..
T Consensus 216 ~~v~~~l~~ 224 (234)
T PLN02200 216 EQVRPIFAA 224 (234)
T ss_pred HHHHHHHHH
Confidence 777766554
No 33
>PRK06762 hypothetical protein; Provisional
Probab=99.04 E-value=5.1e-09 Score=95.56 Aligned_cols=69 Identities=16% Similarity=-0.001 Sum_probs=42.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFY 435 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~ 435 (470)
.|..+|||++|+++|++|+.+|++.. ..+.+.++. .|+..-..+. .. .+|+.+.. +.+++++.|+.
T Consensus 95 ~~~~~v~Ldap~e~~~~R~~~R~~~~--~~~~~~l~~---~~~~~~~~~~-~~-~~~~~~~~-------~~~~v~~~i~~ 160 (166)
T PRK06762 95 GNAYTYYFDLSFEETLRRHSTRPKSH--EFGEDDMRR---WWNPHDTLGV-IG-ETIFTDNL-------SLKDIFDAILT 160 (166)
T ss_pred CCeEEEEEeCCHHHHHHHHhcccccc--cCCHHHHHH---HHhhcCCcCC-CC-eEEecCCC-------CHHHHHHHHHH
Confidence 47899999999999999999997632 233343433 3333211111 12 35554442 56888888887
Q ss_pred hhh
Q 012135 436 LDG 438 (470)
Q Consensus 436 ~I~ 438 (470)
.++
T Consensus 161 ~~~ 163 (166)
T PRK06762 161 DIG 163 (166)
T ss_pred Hhc
Confidence 654
No 34
>PRK04040 adenylate kinase; Provisional
Probab=99.03 E-value=7.6e-09 Score=98.18 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=57.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHH---HhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHH
Q 012135 355 LIPDGFIYLRASPDTCHKRMM---LRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRD 431 (470)
Q Consensus 355 lkPDLvIyLda~pEv~leRI~---kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d 431 (470)
+.||.+|||+++|++.++|.. .|+|..|.....+++..+...|..|+..+...++.+|.-+.. ..++..+
T Consensus 109 l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~a~~~a~~~g~~~~iI~N~d~-------~~e~a~~ 181 (188)
T PRK04040 109 LNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNRAAAMAYAVLTGATVKIVENREG-------LLEEAAE 181 (188)
T ss_pred cCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEECCCC-------CHHHHHH
Confidence 379999999999999999987 488888776667888889888888877666666666654421 1467777
Q ss_pred HHHHhh
Q 012135 432 RVFYLD 437 (470)
Q Consensus 432 ~V~~~I 437 (470)
++.++|
T Consensus 182 ~i~~ii 187 (188)
T PRK04040 182 EIVEVL 187 (188)
T ss_pred HHHHHh
Confidence 766554
No 35
>PRK13808 adenylate kinase; Provisional
Probab=98.98 E-value=2.3e-08 Score=103.09 Aligned_cols=76 Identities=9% Similarity=0.011 Sum_probs=49.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHhccc--------cccCCcHHHHHHHHHHHHhh----cCcCCC-CCeEEEEccCCCccc
Q 012135 355 LIPDGFIYLRASPDTCHKRMMLRKRA--------EEGGVSLDYLRSLHEKHENW----LFPFES-GNHGVLAVSKLPLHI 421 (470)
Q Consensus 355 lkPDLvIyLda~pEv~leRI~kRgR~--------~E~~i~~eYLe~L~e~Ye~w----~~~~~~-~~v~VIDvd~lD~~~ 421 (470)
+.||++|+|++|++++++|+..|... ........+.++| +.|... +..|.. ..+.+||++.
T Consensus 105 i~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL-~~Y~~~t~PLl~~Y~e~~~lv~IDa~~----- 178 (333)
T PRK13808 105 LKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRL-ASYRAQTEPLVHYYSEKRKLLTVDGMM----- 178 (333)
T ss_pred CCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHH-HHHHHHhHHHHHHhhccCcEEEEECCC-----
Confidence 47999999999999999999987211 1111223344456 555553 333332 2567778765
Q ss_pred CCCCchHHHHHHHHhhhh
Q 012135 422 DNGLHPDIRDRVFYLDGP 439 (470)
Q Consensus 422 ~~~~~eev~d~V~~~I~~ 439 (470)
+.+++.++|...|..
T Consensus 179 ---siEEV~eeI~~~L~~ 193 (333)
T PRK13808 179 ---TIDEVTREIGRVLAA 193 (333)
T ss_pred ---CHHHHHHHHHHHHHH
Confidence 557788887777765
No 36
>PRK14531 adenylate kinase; Provisional
Probab=98.95 E-value=2.6e-08 Score=93.20 Aligned_cols=71 Identities=14% Similarity=0.150 Sum_probs=42.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHH---hhcCcCC-CCCeEEEEccCCCcccCCCCchHHHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHE---NWLFPFE-SGNHGVLAVSKLPLHIDNGLHPDIRD 431 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye---~w~~~~~-~~~v~VIDvd~lD~~~~~~~~eev~d 431 (470)
.||.+|+|++|++++.+|+..|+|.... .....+++...++ ..+..|. ...+..||+++ +.+++.+
T Consensus 107 ~~~~vi~l~~~~~~l~~Rl~~R~r~dD~--~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~id~~~--------~~~~v~~ 176 (183)
T PRK14531 107 PIEAVVLLELDDAVLIERLLARGRADDN--EAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQG--------SIEAITE 176 (183)
T ss_pred CCCeEEEEECCHHHHHHHhhcCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCC--------CHHHHHH
Confidence 6899999999999999999999875321 1112222311111 1122222 23578888875 5566666
Q ss_pred HHHHh
Q 012135 432 RVFYL 436 (470)
Q Consensus 432 ~V~~~ 436 (470)
.|...
T Consensus 177 ~i~~~ 181 (183)
T PRK14531 177 RIEKV 181 (183)
T ss_pred HHHHH
Confidence 65543
No 37
>PRK13949 shikimate kinase; Provisional
Probab=98.95 E-value=1.4e-08 Score=94.70 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=49.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHH--hccccccCCc-HHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHH
Q 012135 356 IPDGFIYLRASPDTCHKRMML--RKRAEEGGVS-LDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDR 432 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~k--RgR~~E~~i~-~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~ 432 (470)
..+++|||++|++++++|++. |+|+.+.... .+|++.+++.|+.+..-|...+ .+||++.. +++++++.
T Consensus 93 ~~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~~ad-~~id~~~~-------~~~e~~~~ 164 (169)
T PRK13949 93 ASGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFYRQAK-IIFNADKL-------EDESQIEQ 164 (169)
T ss_pred hCCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhCC-EEEECCCC-------CHHHHHHH
Confidence 347999999999999999984 5677664332 4555555555665544444333 77888864 55777777
Q ss_pred HHH
Q 012135 433 VFY 435 (470)
Q Consensus 433 V~~ 435 (470)
|++
T Consensus 165 I~~ 167 (169)
T PRK13949 165 LVQ 167 (169)
T ss_pred HHH
Confidence 654
No 38
>PRK14527 adenylate kinase; Provisional
Probab=98.95 E-value=1.6e-08 Score=95.05 Aligned_cols=72 Identities=11% Similarity=0.108 Sum_probs=45.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccc--cccCCcHHHHHHHHHHHHhhc----CcCCC-CCeEEEEccCCCcccCCCCchH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRA--EEGGVSLDYLRSLHEKHENWL----FPFES-GNHGVLAVSKLPLHIDNGLHPD 428 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~--~E~~i~~eYLe~L~e~Ye~w~----~~~~~-~~v~VIDvd~lD~~~~~~~~ee 428 (470)
.++.+|||++|++++++|+.+|+.. .+.. +.+.+++-.+.|..-. ..|.. +.+..||+++ +.++
T Consensus 111 ~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd-~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~--------~~~~ 181 (191)
T PRK14527 111 RLLAVVLLEVPDEELIRRIVERARQEGRSDD-NEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLG--------TPDE 181 (191)
T ss_pred CCCEEEEEECCHHHHHHHHHcCcccCCCCCC-CHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCC--------CHHH
Confidence 6899999999999999999998632 1111 3344443334444322 22222 3578888886 5677
Q ss_pred HHHHHHHh
Q 012135 429 IRDRVFYL 436 (470)
Q Consensus 429 v~d~V~~~ 436 (470)
+.+.|...
T Consensus 182 v~~~i~~~ 189 (191)
T PRK14527 182 VYARILKA 189 (191)
T ss_pred HHHHHHHh
Confidence 77666544
No 39
>PRK06217 hypothetical protein; Validated
Probab=98.85 E-value=5.3e-08 Score=91.02 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=24.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
+.|+|.|.+||||||+++.|++. ++..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~-l~~~ 28 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER-LDIP 28 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-cCCc
Confidence 46999999999999999999997 7654
No 40
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.83 E-value=1.1e-07 Score=86.19 Aligned_cols=75 Identities=12% Similarity=0.021 Sum_probs=44.7
Q ss_pred cEEEEEeCCHHHHHHHHHHhcc-ccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHh
Q 012135 358 DGFIYLRASPDTCHKRMMLRKR-AEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYL 436 (470)
Q Consensus 358 DLvIyLda~pEv~leRI~kRgR-~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~ 436 (470)
..+|||++|++++.+|+.+|.. +.... .+..+.++..|......+....-.+||++.. +++++.+.|...
T Consensus 98 ~~~v~l~~~~~~~~~R~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~dl~idt~~~-------~~~e~~~~I~~~ 168 (175)
T PRK00131 98 GTVVYLDASFEELLRRLRRDRNRPLLQT--NDPKEKLRDLYEERDPLYEEVADITVETDGR-------SPEEVVNEILEK 168 (175)
T ss_pred CEEEEEECCHHHHHHHhcCCCCCCcCCC--CChHHHHHHHHHHHHHHHHhhcCeEEeCCCC-------CHHHHHHHHHHH
Confidence 5889999999999999987653 22221 1122233333333221121112367887764 568888888887
Q ss_pred hhhhHH
Q 012135 437 DGPHMH 442 (470)
Q Consensus 437 I~~~L~ 442 (470)
+. .+|
T Consensus 169 v~-~~~ 173 (175)
T PRK00131 169 LE-AAW 173 (175)
T ss_pred HH-hhc
Confidence 75 444
No 41
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.83 E-value=9.8e-08 Score=93.41 Aligned_cols=74 Identities=16% Similarity=0.178 Sum_probs=51.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCcCC-CCCeEEEEccCCCcccCCCCchHHHHHHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFE-SGNHGVLAVSKLPLHIDNGLHPDIRDRVF 434 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~-~~~v~VIDvd~lD~~~~~~~~eev~d~V~ 434 (470)
.+..+|||++|+++|++|..+|++. .+.+.++.+.+.|+.....+. ..+..+||++. +. +.+++.+.|+
T Consensus 95 ~~~~~I~l~~p~e~~~~Rn~~R~~~----~~~~~i~~l~~r~e~p~~~~~wd~~~~~vd~~~-~~-----~~~ei~~~i~ 164 (249)
T TIGR03574 95 KNYIIIYLKAPLDTLLRRNIERGEK----IPNEVIKDMYEKFDEPGTKYSWDLPDLTIDTTK-KI-----DYNEILEEIL 164 (249)
T ss_pred CCEEEEEecCCHHHHHHHHHhCCCC----CCHHHHHHHHHhhCCCCCCCCccCceEEecCCC-CC-----CHHHHHHHHH
Confidence 5789999999999999999988753 345677777777776544443 23677887763 11 3467777777
Q ss_pred Hhhhh
Q 012135 435 YLDGP 439 (470)
Q Consensus 435 ~~I~~ 439 (470)
..+..
T Consensus 165 ~~~~~ 169 (249)
T TIGR03574 165 EISEN 169 (249)
T ss_pred HHhhc
Confidence 65443
No 42
>PRK03839 putative kinase; Provisional
Probab=98.81 E-value=9.6e-08 Score=88.57 Aligned_cols=86 Identities=16% Similarity=0.057 Sum_probs=51.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHH-hhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHE-NWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVF 434 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye-~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~ 434 (470)
.||.+|||+++++++++|+.+|+...+.. .......+.+.+. +.+. ...++.+||++.. +++++.+.|.
T Consensus 79 ~~~~vi~L~~~~~~~~~Rl~~R~~~~~~~-~~~~~~~~~~~~~~~~~~--~r~~~~~Id~~~~-------s~eev~~~I~ 148 (180)
T PRK03839 79 PVDYVIVLRAHPKIIKERLKERGYSKKKI-LENVEAELVDVCLCEALE--EKEKVIEVDTTGK-------TPEEVVEEIL 148 (180)
T ss_pred CCCEEEEEECCHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHHH--hcCCEEEEECCCC-------CHHHHHHHHH
Confidence 57999999999999999999887432210 0111122222211 1111 1235778888642 4578888877
Q ss_pred HhhhhhHHhhhhcCCeEEEecC
Q 012135 435 YLDGPHMHSSIQKVPALVLDCE 456 (470)
Q Consensus 435 ~~I~~~L~~~i~~~p~l~~d~~ 456 (470)
+.+.... .-+++.+|-.
T Consensus 149 ~~l~~~~-----~~~~~~~~~~ 165 (180)
T PRK03839 149 ELIKSGK-----KRKVGIVDWS 165 (180)
T ss_pred HHHhcCC-----CCCCCeecch
Confidence 7776543 3466777764
No 43
>PRK14528 adenylate kinase; Provisional
Probab=98.76 E-value=9.8e-08 Score=89.98 Aligned_cols=71 Identities=13% Similarity=0.056 Sum_probs=41.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhcccc--ccCCcHHHHHHHHHHHHh---hcCcCCC-CCeEEEEccCCCcccCCCCchHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAE--EGGVSLDYLRSLHEKHEN---WLFPFES-GNHGVLAVSKLPLHIDNGLHPDI 429 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~--E~~i~~eYLe~L~e~Ye~---w~~~~~~-~~v~VIDvd~lD~~~~~~~~eev 429 (470)
.||++|+|++|++++++|+..|.... ..+......+++...+.. .+..|.. +.+..||++. +.+++
T Consensus 107 ~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~--------~~~~v 178 (186)
T PRK14528 107 SIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVG--------SLEEV 178 (186)
T ss_pred CCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhCCCEEEEECCC--------CHHHH
Confidence 79999999999999999999884211 111111222333222222 2333332 3578888775 55666
Q ss_pred HHHHH
Q 012135 430 RDRVF 434 (470)
Q Consensus 430 ~d~V~ 434 (470)
.+.|.
T Consensus 179 ~~~~~ 183 (186)
T PRK14528 179 TSLIQ 183 (186)
T ss_pred HHHHH
Confidence 66554
No 44
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.76 E-value=1.5e-07 Score=86.98 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
.++++|+|+|++||||||+++.|+++ +.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~-l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYER-LK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH-HH
Confidence 46889999999999999999999987 54
No 45
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.75 E-value=2.4e-08 Score=97.33 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=41.6
Q ss_pred CCcEEEEEeCCHHHHHHH-----HHHhccccccCCcHHHHHHHHHHHHhhcCcCCCC
Q 012135 356 IPDGFIYLRASPDTCHKR-----MMLRKRAEEGGVSLDYLRSLHEKHENWLFPFESG 407 (470)
Q Consensus 356 kPDLvIyLda~pEv~leR-----I~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~ 407 (470)
..|+.||++++.++++.| +.+||+..|.- -.+|...++..|+.++++....
T Consensus 127 ~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~v-i~qy~~~vkp~~~~fIeptk~~ 182 (218)
T COG0572 127 LMDLKIFVDTDADVRLIRRIKRDVQERGRDLESV-IEQYVKTVRPMYEQFIEPTKKY 182 (218)
T ss_pred hcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHH-HHHHHHhhChhhhhccCccccc
Confidence 569999999999999766 45688888753 3588889999999999987643
No 46
>PRK04182 cytidylate kinase; Provisional
Probab=98.73 E-value=3.8e-07 Score=83.30 Aligned_cols=76 Identities=16% Similarity=0.058 Sum_probs=45.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHhcc-ccccCCcHHHHHHH----HHHHHhhcCc---CCCCCeEEEEccCCCcccCCCCchH
Q 012135 357 PDGFIYLRASPDTCHKRMMLRKR-AEEGGVSLDYLRSL----HEKHENWLFP---FESGNHGVLAVSKLPLHIDNGLHPD 428 (470)
Q Consensus 357 PDLvIyLda~pEv~leRI~kRgR-~~E~~i~~eYLe~L----~e~Ye~w~~~---~~~~~v~VIDvd~lD~~~~~~~~ee 428 (470)
++++|||++|++++++|+..|+. +.+.. ...++.. .+.|..++.. .....-.+||++.. ++++
T Consensus 92 ~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~~idt~~~-------~~~~ 162 (180)
T PRK04182 92 ADLKIWLKAPLEVRAERIAEREGISVEEA--LEETIEREESEAKRYKEYYGIDIDDLSIYDLVINTSRW-------DPEG 162 (180)
T ss_pred CCEEEEEECCHHHHHHHHHhccCCCHHHH--HHHHHHHHHHHHHHHHHHhCCCccccccccEEEECCCC-------CHHH
Confidence 68999999999999999998863 22211 1122211 1223333211 11122377887764 5588
Q ss_pred HHHHHHHhhhhhH
Q 012135 429 IRDRVFYLDGPHM 441 (470)
Q Consensus 429 v~d~V~~~I~~~L 441 (470)
+++.|.+.+..++
T Consensus 163 ~~~~I~~~~~~~~ 175 (180)
T PRK04182 163 VFDIILTAIDKLL 175 (180)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888776543
No 47
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.73 E-value=2.2e-07 Score=89.00 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
|.|+|.|++||||||+++.|+++ +++.
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~-~~~~ 27 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEK-YGIP 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 46999999999999999999997 6754
No 48
>PLN02842 nucleotide kinase
Probab=98.70 E-value=2.4e-07 Score=100.16 Aligned_cols=171 Identities=13% Similarity=0.079 Sum_probs=88.5
Q ss_pred EEcCCCCcHHHHHHHHHHhhhcCCCce--EeccC--CccccccCCCCccchhhhhhcCCCCCchHHHHHHHHHHHHHHHH
Q 012135 226 VEGNISVGKTTFLQRIANETLELRDLV--EIVPE--PIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQERE 301 (470)
Q Consensus 226 IEG~dGSGKSTLaKlLAk~~L~~~~~~--Evv~E--Pv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~Fla~R~~ql~~ 301 (470)
|+|++|||||||++.|++. ++...+. +.+.+ +.++ ..+..++.+..+-.-..-..-..++.+|+.+..
T Consensus 2 I~G~PGSGKSTqa~~Lak~-lg~~hIs~gdLLR~ev~~~T------~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~- 73 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHK-FGLVHISTGDLLRAEVSAGT------DIGKRAKEFMNSGRLVPDEIVIAMVTGRLSRED- 73 (505)
T ss_pred eeCCCCCCHHHHHHHHHHH-hCCCEEEccHHHHHHhccCC------HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCcc-
Confidence 7899999999999999997 7764321 01111 1000 112234444432211111222234556654321
Q ss_pred hcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHHHHHHhcccc
Q 012135 302 SSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRKRAE 381 (470)
Q Consensus 302 ~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~leRI~kRgR~~ 381 (470)
. . ....|+|+++.+- .+ +.. +.... ..||++|+||+|++++++|+.+|....
T Consensus 74 ~--~-~~G~ILDGfPRt~--------~Q-----------a~~----Le~~~--~~PDlVI~LDvpdevlleRl~gR~~dp 125 (505)
T PLN02842 74 A--K-EKGWLLDGYPRSF--------AQ-----------AQS----LEKLK--IRPDIFILLDVPDEILIDRCVGRRLDP 125 (505)
T ss_pred c--c-CCcEEEeCCCCcH--------HH-----------HHH----HHhcC--CCCCEEEEEeCCHHHHHHHHhcccccc
Confidence 0 1 1224446655431 00 011 11111 379999999999999999998874210
Q ss_pred ----------------------c---cCCcHHHHHHHHHHHHhh----cCcCCCCCeEEEEccCCCcccCCCCchHHHHH
Q 012135 382 ----------------------E---GGVSLDYLRSLHEKHENW----LFPFESGNHGVLAVSKLPLHIDNGLHPDIRDR 432 (470)
Q Consensus 382 ----------------------E---~~i~~eYLe~L~e~Ye~w----~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~ 432 (470)
. ........++| +.|... +..|. ..+..||++. +.+++.+.
T Consensus 126 ~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~IkkRL-~~Y~~~t~pIl~~Y~-~rl~~IDAsq--------s~EeVfee 195 (505)
T PLN02842 126 VTGKIYHIKNFPPESEEIKARLITRPDDTEEKVKARL-QIYKKNAEAILSTYS-DIMVKIDGNR--------PKEVVFEE 195 (505)
T ss_pred ccCCccccccCCCCccccccccccCCCCCHHHHHHHH-HHHHHHhhhHHHhcC-cEEEEEECCC--------CHHHHHHH
Confidence 0 01112223344 233332 23333 3467788776 56888888
Q ss_pred HHHhhhhhHH
Q 012135 433 VFYLDGPHMH 442 (470)
Q Consensus 433 V~~~I~~~L~ 442 (470)
|...+.+.+.
T Consensus 196 I~~iL~~~L~ 205 (505)
T PLN02842 196 ISSLLSQIQK 205 (505)
T ss_pred HHHHHHHHHh
Confidence 8777776554
No 49
>PRK14530 adenylate kinase; Provisional
Probab=98.69 E-value=9e-07 Score=84.79 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=25.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
|.++.|+|.|++||||||+++.|++. ++..
T Consensus 1 ~~~~~I~i~G~pGsGKsT~~~~La~~-~~~~ 30 (215)
T PRK14530 1 MSQPRILLLGAPGAGKGTQSSNLAEE-FGVE 30 (215)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH-hCCe
Confidence 35668999999999999999999997 6653
No 50
>PRK13946 shikimate kinase; Provisional
Probab=98.68 E-value=9.2e-07 Score=82.98 Aligned_cols=74 Identities=15% Similarity=0.058 Sum_probs=49.5
Q ss_pred cEEEEEeCCHHHHHHHHHHhcc-cccc-CCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHH
Q 012135 358 DGFIYLRASPDTCHKRMMLRKR-AEEG-GVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFY 435 (470)
Q Consensus 358 DLvIyLda~pEv~leRI~kRgR-~~E~-~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~ 435 (470)
+++|||++|++++++|+.+|.. +... ....+.++.+......++..+ . ++||.+.+ +++++.+.|+.
T Consensus 104 ~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~y~~~---d-l~i~~~~~-------~~~~~~~~i~~ 172 (184)
T PRK13946 104 GISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYPVYAEA---D-LTVASRDV-------PKEVMADEVIE 172 (184)
T ss_pred CEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhC---C-EEEECCCC-------CHHHHHHHHHH
Confidence 5789999999999999998753 3221 122456666655555554332 2 55666643 56889999888
Q ss_pred hhhhhHH
Q 012135 436 LDGPHMH 442 (470)
Q Consensus 436 ~I~~~L~ 442 (470)
.+...+.
T Consensus 173 ~i~~~~~ 179 (184)
T PRK13946 173 ALAAYLE 179 (184)
T ss_pred HHHHhhc
Confidence 8876554
No 51
>PRK14529 adenylate kinase; Provisional
Probab=98.68 E-value=3.8e-07 Score=89.26 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=24.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELRD 250 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~~ 250 (470)
|.|+|.|++||||||+++.|+++ ++...
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~-~~~~~ 28 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKK-YDLAH 28 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HCCCC
Confidence 46899999999999999999997 77654
No 52
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.66 E-value=1.2e-07 Score=89.99 Aligned_cols=75 Identities=17% Similarity=0.111 Sum_probs=49.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhc-----cccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRK-----RAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIR 430 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRg-----R~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~ 430 (470)
..|++|||++|.+++++|...|. +..|. ....|...+...|+.++.++....-.+|+.+. .++..+
T Consensus 125 ~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~-~~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~~--------~~~~~~ 195 (209)
T PRK05480 125 LMDIKIFVDTPLDIRLIRRLKRDVNERGRSLES-VINQYLSTVRPMHLQFIEPSKRYADIIIPEGG--------KNRVAI 195 (209)
T ss_pred hhceeEEEeCChhHHHHHHHhhcchhcCCCHHH-HHHHHHHhhhhhHHhhccHhhcceeEEecCCC--------cchHHH
Confidence 46999999999999999977764 33332 22456677788888888876655556665542 234455
Q ss_pred HHHHHhhhh
Q 012135 431 DRVFYLDGP 439 (470)
Q Consensus 431 d~V~~~I~~ 439 (470)
+.+...|..
T Consensus 196 ~~l~~~i~~ 204 (209)
T PRK05480 196 DILKAKIRQ 204 (209)
T ss_pred HHHHHHHHH
Confidence 555554443
No 53
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=98.66 E-value=4.1e-07 Score=98.21 Aligned_cols=186 Identities=11% Similarity=0.053 Sum_probs=114.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCce-EeccCCccccccCCCCccchhhhhhcCCCCCchHHHHHHHHHHH
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANETLELRDLV-EIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRV 296 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~-Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~Fla~R~ 296 (470)
.+.+.+|+|||.+||||+++++.|.+. |..+++- ..+..|.+. + .... | +-|+
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~-ldprg~~v~~~~~P~~e------------E------~~~~------f-lwRf 90 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEW-MDPRGIETHAFGRPSDE------------E------RERP------P-MWRF 90 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHH-hCcCccEEEeCCCCCHH------------H------hcCc------H-HHHH
Confidence 357899999999999999999999987 8877642 223333210 0 0111 1 2444
Q ss_pred HHHHHhcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCC-CCCCcEEEEEeCCHHHHHHHHH
Q 012135 297 MQERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLP-GLIPDGFIYLRASPDTCHKRMM 375 (470)
Q Consensus 297 ~ql~~~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp-~lkPDLvIyLda~pEv~leRI~ 375 (470)
.. ..+..|.+.|+|||.|++. ....+ .|.+++.+|.....-...+...|- +-.-=+-+||.+|.++..+|+.
T Consensus 91 w~---~lP~~G~I~IFdRSWY~~v--lverv--~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~ 163 (493)
T TIGR03708 91 WR---RLPPKGKIGIFFGSWYTRP--LIERL--EGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLK 163 (493)
T ss_pred HH---hCCCCCeEEEEcCcccchh--hHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHH
Confidence 32 2355578999999999995 33222 377777776543332222322221 0022367999999999999999
Q ss_pred Hhcccccc--CCc------HHHHHHHHHHHHhhcCcCC--CCCeEEEEccCCCcccCCCCchHHHHHHHHhhhhhH
Q 012135 376 LRKRAEEG--GVS------LDYLRSLHEKHENWLFPFE--SGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHM 441 (470)
Q Consensus 376 kRgR~~E~--~i~------~eYLe~L~e~Ye~w~~~~~--~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~~L 441 (470)
+|-....+ ..+ .+.+....++|++.+.... ..|..||+++.-.+ ..-.+.+.|+..+...|
T Consensus 164 ~r~~~P~k~WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~vI~addK~~-----arl~v~~~il~~L~~~l 234 (493)
T TIGR03708 164 KLEKDPETRWRVTPEDWKQLKVYDRYRKLAERMLRYTSTPYAPWTVVEGEDDRY-----RSLTVGRTLLAAIRARL 234 (493)
T ss_pred HHhcCCccccCCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHH-----HHHHHHHHHHHHHHHHH
Confidence 98655443 111 2334556667777666543 34899999995332 33445555555555554
No 54
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.66 E-value=5.5e-07 Score=86.24 Aligned_cols=72 Identities=15% Similarity=0.160 Sum_probs=52.0
Q ss_pred CCcEEEEEeCCH--HHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHH
Q 012135 356 IPDGFIYLRASP--DTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRV 433 (470)
Q Consensus 356 kPDLvIyLda~p--Ev~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V 433 (470)
.||+++++.+|| +++.+|+.+|+... ..++.+++...|..+..... ..+.+||++. +.+++.++|
T Consensus 122 ~pd~~~if~~pps~e~l~~Rl~~R~~~~----~~~~~~Rl~~~~~e~~~~~~-~~~~iId~~~--------~~e~v~~~i 188 (206)
T PRK14738 122 VPEAVFIFLAPPSMDELTRRLELRRTES----PEELERRLATAPLELEQLPE-FDYVVVNPED--------RLDEAVAQI 188 (206)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHcCCCC----HHHHHHHHHHHHHHHhcccC-CCEEEECCCC--------CHHHHHHHH
Confidence 579988888764 47899999998532 24778899988887653322 2567777764 468888888
Q ss_pred HHhhhhh
Q 012135 434 FYLDGPH 440 (470)
Q Consensus 434 ~~~I~~~ 440 (470)
.+.+.+.
T Consensus 189 ~~~l~~~ 195 (206)
T PRK14738 189 MAIISAE 195 (206)
T ss_pred HHHHHHH
Confidence 8888765
No 55
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.65 E-value=9.6e-07 Score=83.37 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=45.7
Q ss_pred cEEEEEeCCHHHHHHHHH-HhccccccCCcH-HHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHH
Q 012135 358 DGFIYLRASPDTCHKRMM-LRKRAEEGGVSL-DYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFY 435 (470)
Q Consensus 358 DLvIyLda~pEv~leRI~-kRgR~~E~~i~~-eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~ 435 (470)
-.+|||++|++++++|+. .+.|+.-+..+. +-++.|.+.-..|+... ...+++++. .++++.+.|++
T Consensus 96 g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e~---a~~~~~~~~--------~~~~v~~~i~~ 164 (172)
T COG0703 96 GIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYREV---ADFIIDTDD--------RSEEVVEEILE 164 (172)
T ss_pred CeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHHHh---CcEEecCCC--------CcHHHHHHHHH
Confidence 389999999999999998 556765444333 43444444444454443 357777774 33667777666
Q ss_pred hhhh
Q 012135 436 LDGP 439 (470)
Q Consensus 436 ~I~~ 439 (470)
.+..
T Consensus 165 ~l~~ 168 (172)
T COG0703 165 ALEG 168 (172)
T ss_pred HHHH
Confidence 5543
No 56
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.63 E-value=3.5e-07 Score=83.90 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
..|.|.|.+||||||+++.|++. ++..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~-lg~~ 29 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQA-LGYR 29 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 46888999999999999999997 7754
No 57
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.59 E-value=1.4e-06 Score=78.99 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=24.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
|+|+|.|..||||||+++.|++. ++..
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~-lg~~ 27 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEK-LSLK 27 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-cCCc
Confidence 58999999999999999999986 6654
No 58
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=98.59 E-value=7.5e-07 Score=87.69 Aligned_cols=164 Identities=18% Similarity=0.187 Sum_probs=103.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCce-EeccCCccccccCCCCccchhhhhhcCCCCCchHHHHHHHHHHHHH
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELRDLV-EIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQ 298 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~-Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~Fla~R~~q 298 (470)
.+.+|+|||.+||||...++.|.+. +..+++- ..+..|++. + .+.. | +-|+-.
T Consensus 30 ~~vlIv~eG~DaAGKg~~I~~l~~~-lDPRg~~v~~~~~pt~e------------E------~~~p------~-lwRfw~ 83 (230)
T TIGR03707 30 ARVVIVFEGRDAAGKGGTIKRITEH-LNPRGARVVALPKPSDR------------E------RTQW------Y-FQRYVQ 83 (230)
T ss_pred CCEEEEEeCCCCCCchHHHHHHHHh-cCCCeeEEEeCCCCCHH------------H------HcCh------H-HHHHHH
Confidence 5899999999999999999999987 7777642 223333210 0 0111 1 244432
Q ss_pred HHHhcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCC-CCCCcEEEEEeCCHHHHHHHHHHh
Q 012135 299 ERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLP-GLIPDGFIYLRASPDTCHKRMMLR 377 (470)
Q Consensus 299 l~~~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp-~lkPDLvIyLda~pEv~leRI~kR 377 (470)
..+..+.+.|++||.|++. ....+ .|.+++.++....+-...+...|- +-..=+.|||.+|.++..+|+++|
T Consensus 84 ---~lP~~G~i~IF~rSwY~~~--lv~rv--~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r 156 (230)
T TIGR03707 84 ---HLPAAGEIVLFDRSWYNRA--GVERV--MGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKAR 156 (230)
T ss_pred ---hCCCCCeEEEEeCchhhhH--HHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHH
Confidence 2355578999999999994 33333 377777776544332223322221 012237899999999999999998
Q ss_pred cccccc--CCc------HHHHHHHHHHHHhhcCcCC--CCCeEEEEccC
Q 012135 378 KRAEEG--GVS------LDYLRSLHEKHENWLFPFE--SGNHGVLAVSK 416 (470)
Q Consensus 378 gR~~E~--~i~------~eYLe~L~e~Ye~w~~~~~--~~~v~VIDvd~ 416 (470)
-....+ .++ .+.+....++|++.+.... ..|..||+++.
T Consensus 157 ~~~p~k~Wk~~~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~d 205 (230)
T TIGR03707 157 IDDPLKQWKLSPMDLASLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDD 205 (230)
T ss_pred hcCCcccccCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCC
Confidence 654433 121 2334566677777666544 35899999984
No 59
>PTZ00301 uridine kinase; Provisional
Probab=98.58 E-value=2.8e-07 Score=89.28 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=39.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHh-----ccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEE
Q 012135 356 IPDGFIYLRASPDTCHKRMMLR-----KRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVL 412 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kR-----gR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VI 412 (470)
..|+.||++++.++++.|..+| |+..|. +-..|...+...|..|+.+.+...-.+|
T Consensus 126 l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~-v~~~~~~~v~~~~~~~I~p~k~~ADiIi 186 (210)
T PTZ00301 126 EMDCLIFVDTPLDICLIRRAKRDMRERGRTFES-VIEQYEATVRPMYYAYVEPSKVYADIIV 186 (210)
T ss_pred hCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHH-HHHHHHHhhcccHHHHcCccccCCcEEE
Confidence 4599999999999999886554 554442 2235667788889999888775433444
No 60
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=98.58 E-value=1.8e-06 Score=86.55 Aligned_cols=191 Identities=14% Similarity=0.069 Sum_probs=113.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCce-EeccCCccccccCCCCccchhhhhhcCCCCCchHHHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDLV-EIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVM 297 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~-Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~Fla~R~~ 297 (470)
..+.+|+|+|.+||||...++.|.+. +..+++. ..+..|++. + .++.| +-|+.
T Consensus 54 ~~~vlIv~eG~DaAGKG~~I~~l~~~-lDPRg~~V~s~~~Pt~e------------E------~~~p~-------lWRfw 107 (264)
T TIGR03709 54 RRSLLLVLQAMDAAGKDGTIRHVMSG-VNPQGCQVTSFKAPSAE------------E------LDHDF-------LWRIH 107 (264)
T ss_pred CCcEEEEEECCCCCCchHHHHHHHHh-cCCCeeEEEeCCCCCHH------------H------HcCch-------HHHHH
Confidence 45889999999999999999999987 7777642 223333211 0 11122 23442
Q ss_pred HHHHhcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCC-CCCCcEEEEEeCCHHHHHHHHHH
Q 012135 298 QERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLP-GLIPDGFIYLRASPDTCHKRMML 376 (470)
Q Consensus 298 ql~~~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp-~lkPDLvIyLda~pEv~leRI~k 376 (470)
...+..+.+.|++||.|++. ....+ .|.+.+.++....+-...+...|- +-.-=+.|||.+|.++..+|+++
T Consensus 108 ---~~lP~~G~i~IF~RSWY~~v--l~~rv--~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~ 180 (264)
T TIGR03709 108 ---KALPERGEIGIFNRSHYEDV--LVVRV--HGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLA 180 (264)
T ss_pred ---HhCCCCCeEEEEcCccccch--hhhhh--cCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHH
Confidence 22355578999999999994 33322 377777776543332222222221 00223679999999999999999
Q ss_pred hcccccc--CCc------HHHHHHHHHHHHhhcCcCC--CCCeEEEEccCCCcccCCCCchHHHHHHHHhhhhhHHhhhh
Q 012135 377 RKRAEEG--GVS------LDYLRSLHEKHENWLFPFE--SGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMHSSIQ 446 (470)
Q Consensus 377 RgR~~E~--~i~------~eYLe~L~e~Ye~w~~~~~--~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~~L~~~i~ 446 (470)
|-....+ .++ .+.+....++|++.+.... ..+..||+++. ..--.=.|.+.|.+.|...--
T Consensus 181 r~~~p~k~Wk~s~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~d---------k~~a~l~v~~~ll~~l~~~~~ 251 (264)
T TIGR03709 181 RLDDPTKNWKFSPADLKERAYWDDYMEAYEDALTATSTKHAPWYVVPADD---------KWFRRLAVAEILLDALESLDL 251 (264)
T ss_pred HhcCCcccccCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCC---------HHHHHHHHHHHHHHHHHHcCC
Confidence 8544333 111 2334566677777666543 35899999984 222233445555555544333
Q ss_pred cCCeE
Q 012135 447 KVPAL 451 (470)
Q Consensus 447 ~~p~l 451 (470)
..|.+
T Consensus 252 ~~p~~ 256 (264)
T TIGR03709 252 KYPEP 256 (264)
T ss_pred CCCCC
Confidence 34443
No 61
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.56 E-value=2.5e-06 Score=79.58 Aligned_cols=73 Identities=10% Similarity=0.052 Sum_probs=46.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHhc-cccccCC-cHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHH
Q 012135 357 PDGFIYLRASPDTCHKRMMLRK-RAEEGGV-SLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVF 434 (470)
Q Consensus 357 PDLvIyLda~pEv~leRI~kRg-R~~E~~i-~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~ 434 (470)
-+.+|||++|++++++|+..++ |+.-... ..+.++.+.+.-..++.... -.+||++.. +++++.+.|+
T Consensus 97 ~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~~~Y~~~A---d~~idt~~~-------s~~ei~~~i~ 166 (172)
T PRK05057 97 RGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERNPLYEEIA---DVTIRTDDQ-------SAKVVANQII 166 (172)
T ss_pred CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhC---CEEEECCCC-------CHHHHHHHHH
Confidence 4789999999999999998653 4332211 12345555444444544322 377887753 5688888887
Q ss_pred Hhhhh
Q 012135 435 YLDGP 439 (470)
Q Consensus 435 ~~I~~ 439 (470)
+.+.+
T Consensus 167 ~~l~~ 171 (172)
T PRK05057 167 HMLES 171 (172)
T ss_pred HHHhh
Confidence 76643
No 62
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.55 E-value=2.9e-07 Score=86.30 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=25.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELRD 250 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~~ 250 (470)
|+|+|.|++||||||+++.|+++ ++...
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~-~gl~~ 28 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEH-LGLKL 28 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHH-hCCce
Confidence 68999999999999999999998 88764
No 63
>PRK13947 shikimate kinase; Provisional
Probab=98.55 E-value=1.1e-06 Score=80.36 Aligned_cols=69 Identities=12% Similarity=0.095 Sum_probs=41.4
Q ss_pred cEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHH
Q 012135 358 DGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFY 435 (470)
Q Consensus 358 DLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~ 435 (470)
+++|||+++++++.+|+..|+..... ...++.+.+.+.|+.....|.. .-.+||++.. +++++.+.|.+
T Consensus 95 ~~vv~L~~~~~~l~~Rl~~r~~rp~~-~~~~~~~~i~~~~~~r~~~y~~-ad~~Idt~~~-------~~~~i~~~I~~ 163 (171)
T PRK13947 95 GVVICLKARPEVILRRVGKKKSRPLL-MVGDPEERIKELLKEREPFYDF-ADYTIDTGDM-------TIDEVAEEIIK 163 (171)
T ss_pred CEEEEEECCHHHHHHHhcCCCCCCCC-CCCChHHHHHHHHHHHHHHHHh-cCEEEECCCC-------CHHHHHHHHHH
Confidence 57999999999999999877532121 1123344454444443222211 2367777653 45788877766
No 64
>PRK00625 shikimate kinase; Provisional
Probab=98.54 E-value=7.9e-07 Score=83.60 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=24.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
|.|+|.|.+||||||+++.|+++ ++..
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~-l~~~ 27 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKF-LSLP 27 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 46999999999999999999997 7754
No 65
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.54 E-value=5.9e-07 Score=79.17 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=24.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhcccccc
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEG 383 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~ 383 (470)
.+-.+|+|+++.+++.+|+..|++..+.
T Consensus 97 ~~~~~v~l~~~~~~~~~R~~~R~~~~~~ 124 (143)
T PF13671_consen 97 YPVRVVYLDAPEETLRERLAQRNREGDK 124 (143)
T ss_dssp EEEEEEEECHHHHHHHHHHHTTHCCCTT
T ss_pred CeEEEEEEECCHHHHHHHHHhcCCcccc
Confidence 4578999999999999999999887543
No 66
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.54 E-value=2.9e-06 Score=82.63 Aligned_cols=152 Identities=20% Similarity=0.184 Sum_probs=81.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCCCCccchhhhhhcCCCCCchHHHHH--HHHHHHHHH
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNY--VFVTRVMQE 299 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~--Fla~R~~ql 299 (470)
++|.+.|.+||||||+++.|++. |..+. |+.+. .+..++..+..|.. ....-|.| +...+....
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~-L~~~i-----------~~vi~-l~kdy~~~i~~DEs-lpi~ke~yres~~ks~~rl 67 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE-LRQEI-----------WRVIH-LEKDYLRGILWDES-LPILKEVYRESFLKSVERL 67 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH-HHHhh-----------hhccc-cchhhhhheecccc-cchHHHHHHHHHHHHHHHH
Confidence 57899999999999999999997 66543 22210 11123333332221 11111221 122222222
Q ss_pred HHhcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHHHHHHhcc
Q 012135 300 RESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRKR 379 (470)
Q Consensus 300 ~~~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~leRI~kRgR 379 (470)
..++-. ..+||.|-.-| +..+.|+ .++ .. ... ..+-.+|||.+|+++|++|=..||.
T Consensus 68 ldSalk-n~~VIvDdtNY-----yksmRrq----------L~c----ea-k~~--~tt~ciIyl~~plDtc~rrN~erge 124 (261)
T COG4088 68 LDSALK-NYLVIVDDTNY-----YKSMRRQ----------LAC----EA-KER--KTTWCIIYLRTPLDTCLRRNRERGE 124 (261)
T ss_pred HHHHhc-ceEEEEecccH-----HHHHHHH----------HHH----HH-Hhc--CCceEEEEEccCHHHHHHhhccCCC
Confidence 222211 45677654322 3333332 111 11 112 2678999999999999998877776
Q ss_pred ccccCCcHHHHHHHHHHHHhhcCcCC-CCCeEEEEc
Q 012135 380 AEEGGVSLDYLRSLHEKHENWLFPFE-SGNHGVLAV 414 (470)
Q Consensus 380 ~~E~~i~~eYLe~L~e~Ye~w~~~~~-~~~v~VIDv 414 (470)
+. +.+-++++.+.|++=-..+. .++..+||.
T Consensus 125 pi----p~Evl~qly~RfEePn~~~rWDspll~id~ 156 (261)
T COG4088 125 PI----PEEVLRQLYDRFEEPNPDRRWDSPLLVIDD 156 (261)
T ss_pred CC----CHHHHHHHHHhhcCCCCCccccCceEEEec
Confidence 54 45667777777765211111 136678873
No 67
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=98.52 E-value=4.4e-07 Score=89.15 Aligned_cols=184 Identities=16% Similarity=0.125 Sum_probs=100.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCce-EeccCCccccccCCCCccchhhhhhcCCCCCchHHHHHHHHHHHHH
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELRDLV-EIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQ 298 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~-Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~Fla~R~~q 298 (470)
.+.+|+|||.+||||+.+++.|.+. |..+++. ..+..|.+. . ....| +-|+-
T Consensus 30 ~~vlIl~eG~d~sGKg~~I~~l~~~-lDPR~~~v~~~~~pt~e-------------E-----~~~p~-------lwRfw- 82 (228)
T PF03976_consen 30 IPVLILFEGWDASGKGGTINRLIEW-LDPRGFRVHAFGKPTDE-------------E-----LRRPF-------LWRFW- 82 (228)
T ss_dssp HEEEEEEEESTTSSHHHHHHHHHCC-S-GGGEEEEE-SS--HH-------------H-----HTS-T-------THHHH-
T ss_pred CcEEEEEeccccCCchHHHHHHHHh-CCCCeeEEEeCCCCChh-------------H-----cCCCc-------HHHHH-
Confidence 4589999999999999999999986 7766532 223333211 0 01111 13332
Q ss_pred HHHhcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCC-CCCCcEEEEEeCCHHHHHHHHHHh
Q 012135 299 ERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLP-GLIPDGFIYLRASPDTCHKRMMLR 377 (470)
Q Consensus 299 l~~~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp-~lkPDLvIyLda~pEv~leRI~kR 377 (470)
...+..|.+.|++||.|++. +...+ .|.+++.++....+-...+...|- +-.-=+-|||.+|.++..+|+++|
T Consensus 83 --~~lP~~G~I~if~rSWY~~~--l~~rv--~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~~ 156 (228)
T PF03976_consen 83 --RALPARGQIGIFDRSWYEDV--LVERV--EGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKER 156 (228)
T ss_dssp --TTS--TT-EEEEES-GGGGG--THHHH--TTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHH
T ss_pred --HhCCCCCEEEEEecchhhHH--HHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHHH
Confidence 23455578999999999995 33322 466777666544433333332221 002236799999999999999998
Q ss_pred cccccc--CCc------HHHHHHHHHHHHhhcCcC--CCCCeEEEEccCCCcccCCCCchHHHHHHHHhhhhhHHhhh
Q 012135 378 KRAEEG--GVS------LDYLRSLHEKHENWLFPF--ESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMHSSI 445 (470)
Q Consensus 378 gR~~E~--~i~------~eYLe~L~e~Ye~w~~~~--~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~~L~~~i 445 (470)
...... .++ ...+.....+|++.+... ...|..||+++. ..--.-.|+..|-+.|...+
T Consensus 157 ~~~p~~~wkv~~~D~~~~~~yd~y~~a~~~~l~~T~t~~APW~iI~a~d---------k~~a~l~v~~~l~~~le~~~ 225 (228)
T PF03976_consen 157 EEDPLKRWKVSPEDWEQRKHYDRYQKAYEEMLERTDTPYAPWHIIPADD---------KRYARLAVARTLLDALEKAL 225 (228)
T ss_dssp HHSCCCGGG--HHHHHHHCCHHHHHHHHHHHHHHH-BSSS-EEEEE-SS---------HHHHHHHHHHHHHHHHHHHC
T ss_pred hcCccccccCCHHHHHHHhhHHHHHHHHHHHHhccCCCCCCeEEEeCCC---------HHHHHHHHHHHHHHHhHhhc
Confidence 544332 111 112345556666665532 345899999994 23333344555555555443
No 68
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.51 E-value=3.1e-06 Score=78.21 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=40.6
Q ss_pred cEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhh
Q 012135 358 DGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLD 437 (470)
Q Consensus 358 DLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I 437 (470)
-.+|||++|++++.+|+..|+++.+ .+..+++. .+..+.. ....+.+|+.+. +.+++.++|.+.+
T Consensus 112 ~~~i~l~~~~~~~~~Rl~~R~~~~~----~~~~~rl~-~~~~~~~--~~~~~~vi~~~~--------~~ee~~~~i~~~l 176 (179)
T TIGR02322 112 LLVVNITASPDVLAQRLAARGRESR----EEIEERLA-RSARFAA--APADVTTIDNSG--------SLEVAGETLLRLL 176 (179)
T ss_pred cEEEEEECCHHHHHHHHHHcCCCCH----HHHHHHHH-HHhhccc--ccCCEEEEeCCC--------CHHHHHHHHHHHH
Confidence 4799999999999999999987532 22333442 2222211 122345565553 4577877777665
Q ss_pred h
Q 012135 438 G 438 (470)
Q Consensus 438 ~ 438 (470)
.
T Consensus 177 ~ 177 (179)
T TIGR02322 177 R 177 (179)
T ss_pred c
Confidence 4
No 69
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.51 E-value=1.3e-06 Score=81.01 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=22.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhcc
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKR 379 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR 379 (470)
.|+++|+|++|++++++|+.+|+.
T Consensus 104 ~~~~~i~l~~~~~~~~~Rl~~R~~ 127 (194)
T cd01428 104 KPDKVIELDVPDEVLIERILGRRI 127 (194)
T ss_pred CCCEEEEEECCHHHHHHHHHcCCc
Confidence 689999999999999999999974
No 70
>PRK13948 shikimate kinase; Provisional
Probab=98.50 E-value=4.8e-06 Score=79.05 Aligned_cols=73 Identities=15% Similarity=0.050 Sum_probs=47.1
Q ss_pred cEEEEEeCCHHHHHHHHHHhccccccCC-cHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHh
Q 012135 358 DGFIYLRASPDTCHKRMMLRKRAEEGGV-SLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYL 436 (470)
Q Consensus 358 DLvIyLda~pEv~leRI~kRgR~~E~~i-~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~ 436 (470)
..+|||++|++++.+|+..++|+.-... ..+.+..+.+.-+.++.. .-.+||++.. +++++.+.|.+.
T Consensus 104 g~vV~L~~~~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~~R~~~Y~~----a~~~i~t~~~-------~~~ei~~~i~~~ 172 (182)
T PRK13948 104 GPVVVLWASPETIYERTRPGDRPLLQVEDPLGRIRTLLNEREPVYRQ----ATIHVSTDGR-------RSEEVVEEIVEK 172 (182)
T ss_pred CeEEEEECCHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHh----CCEEEECCCC-------CHHHHHHHHHHH
Confidence 5789999999999999976666643321 233444444444444422 2367777642 568888888877
Q ss_pred hhhhH
Q 012135 437 DGPHM 441 (470)
Q Consensus 437 I~~~L 441 (470)
+..++
T Consensus 173 l~~~~ 177 (182)
T PRK13948 173 LWAWA 177 (182)
T ss_pred HHHHh
Confidence 76643
No 71
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.50 E-value=6.1e-07 Score=85.45 Aligned_cols=76 Identities=13% Similarity=0.044 Sum_probs=49.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHh-----ccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLR-----KRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIR 430 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kR-----gR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~ 430 (470)
..|++|||++|.++++.|..+| |+..+. ....|.+.....|..++.+.....-.||+... .++...
T Consensus 125 ~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~-~~~~~~~~~~~~~~~~i~~~~~~Ad~vi~~~~--------~~~~~~ 195 (207)
T TIGR00235 125 LMDLKIFVDTPLDIRLIRRIERDINERGRSLDS-VIDQYRKTVRPMYEQFVEPTKQYADLIIPEGG--------RNEVAI 195 (207)
T ss_pred hCCEEEEEECChhHHHHHHHHHHHHhhCCCHHH-HHHHHHHhhhhhHHHhCcccccccEEEEcCCC--------CchHHH
Confidence 4699999999999999998766 333321 22355566667787777766544446666443 446666
Q ss_pred HHHHHhhhhh
Q 012135 431 DRVFYLDGPH 440 (470)
Q Consensus 431 d~V~~~I~~~ 440 (470)
+-+++.|..+
T Consensus 196 ~~~~~~~~~~ 205 (207)
T TIGR00235 196 NVLDTKIKHL 205 (207)
T ss_pred HHHHHHHHHh
Confidence 6666666554
No 72
>PRK08118 topology modulation protein; Reviewed
Probab=98.50 E-value=2.3e-07 Score=86.35 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=23.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
+.|+|.|+.||||||+++.|++. ++..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~-l~~~ 28 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK-LNIP 28 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 36999999999999999999997 6654
No 73
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.50 E-value=2.6e-06 Score=75.97 Aligned_cols=59 Identities=22% Similarity=0.195 Sum_probs=36.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhc-cccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCC
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRK-RAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKL 417 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRg-R~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~l 417 (470)
....+|||++|++++.+|+.+|+ |+.....+.+.+..+...+..++.. ..-.+||++++
T Consensus 91 ~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~~~~~~~~~r~~~Y~~---~ad~~i~~~~~ 150 (154)
T cd00464 91 ENGIVVWLDASPEELLERLARDKTRPLLQDEDPERLRELLEEREPLYRE---VADLTIDTDEL 150 (154)
T ss_pred cCCeEEEEeCCHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHHHHHHH---hCcEEEECCCC
Confidence 35689999999999999999885 4443333323334333333333332 23577888754
No 74
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.49 E-value=1e-06 Score=95.63 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
++++|+|.|+.||||||+++.|+++ |+.
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~-l~~ 310 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKK-LGL 310 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-cCC
Confidence 7799999999999999999999997 764
No 75
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.48 E-value=6.1e-06 Score=75.11 Aligned_cols=65 Identities=17% Similarity=0.192 Sum_probs=43.3
Q ss_pred EEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCcCC-CCCeEEEEccCCCcccCCCCchHHHHHHHHhh
Q 012135 359 GFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFE-SGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLD 437 (470)
Q Consensus 359 LvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~-~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I 437 (470)
.+|||++|++++++|+..|+.. ..+. +.++..|..+..+.. ...+.+||++. .++++.+.|.+.+
T Consensus 96 ~~i~l~~~~e~~~~R~~~R~~~---~~~~---~~i~~~~~~~~~~~~~e~~~~~id~~~--------~~~~~~~~~~~~~ 161 (163)
T TIGR01313 96 HFIYLSGDKDVILERMKARKGH---FMKA---DMLESQFAALEEPLADETDVLRVDIDQ--------PLEGVEEDCIAVV 161 (163)
T ss_pred EEEEEeCCHHHHHHHHHhccCC---CCCH---HHHHHHHHHhCCCCCCCCceEEEECCC--------CHHHHHHHHHHHH
Confidence 4699999999999999999742 1232 234455544433322 23688999886 5677777776654
No 76
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.47 E-value=3.2e-06 Score=80.74 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=22.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 224 FCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 224 IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
|+|.|++||||||+++.|++. +++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~-~g~~ 26 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEK-YGLP 26 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHH-cCCC
Confidence 789999999999999999987 6654
No 77
>PLN02674 adenylate kinase
Probab=98.46 E-value=6.1e-06 Score=81.92 Aligned_cols=28 Identities=25% Similarity=0.145 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
.+.|+|-|++||||||+++.|++. +++.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~-~~~~ 58 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDE-YCLC 58 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH-cCCc
Confidence 467999999999999999999997 6654
No 78
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.45 E-value=5.1e-06 Score=84.56 Aligned_cols=75 Identities=19% Similarity=0.171 Sum_probs=51.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHhcc--cccc-CCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHH
Q 012135 357 PDGFIYLRASPDTCHKRMMLRKR--AEEG-GVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRV 433 (470)
Q Consensus 357 PDLvIyLda~pEv~leRI~kRgR--~~E~-~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V 433 (470)
..++|||++|++++.+|+.+|+. +... ....+.++.+.+....++..+ -.+||++.. +.+++++.|
T Consensus 227 ~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~y~~a----d~~I~t~~~-------s~ee~~~~I 295 (309)
T PRK08154 227 HCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREPLYARA----DAVVDTSGL-------TVAQSLARL 295 (309)
T ss_pred CCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhC----CEEEECCCC-------CHHHHHHHH
Confidence 35799999999999999998863 2221 122456666666666666542 257887754 458888888
Q ss_pred HHhhhhhHH
Q 012135 434 FYLDGPHMH 442 (470)
Q Consensus 434 ~~~I~~~L~ 442 (470)
...+...+.
T Consensus 296 ~~~l~~~~~ 304 (309)
T PRK08154 296 RELVRPALG 304 (309)
T ss_pred HHHHHHHhc
Confidence 887765553
No 79
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.42 E-value=1.3e-05 Score=74.44 Aligned_cols=64 Identities=6% Similarity=-0.118 Sum_probs=40.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHh
Q 012135 357 PDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYL 436 (470)
Q Consensus 357 PDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~ 436 (470)
+=..|||++|++++.+|+.+|+... ...... .++.... ......+||++.. ++++..++|+..
T Consensus 111 ~~~~v~l~~~~~~l~~R~~~R~~~~-----~~~~~~---~~~~~~~--~~~~dl~iDts~~-------s~~e~a~~i~~~ 173 (175)
T cd00227 111 DVLWVGVRCPGEVAEGRETARGDRV-----PGQARK---QARVVHA--GVEYDLEVDTTHK-------TPIECARAIAAR 173 (175)
T ss_pred CEEEEEEECCHHHHHHHHHhcCCcc-----chHHHH---HHHHhcC--CCcceEEEECCCC-------CHHHHHHHHHHh
Confidence 4588999999999999999998531 112121 1222211 1223578888863 457888877665
Q ss_pred h
Q 012135 437 D 437 (470)
Q Consensus 437 I 437 (470)
+
T Consensus 174 l 174 (175)
T cd00227 174 V 174 (175)
T ss_pred c
Confidence 4
No 80
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.37 E-value=2.1e-06 Score=80.82 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=39.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHh-----ccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEcc
Q 012135 356 IPDGFIYLRASPDTCHKRMMLR-----KRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVS 415 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kR-----gR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd 415 (470)
..|++|||++|++++++|..+| ++..|. ....|...+...|..++.++....-.+|+.+
T Consensus 118 ~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~-~~~~~~~~~~~~~~~~i~~~~~~aD~ii~~~ 181 (198)
T cd02023 118 LMDLKIFVDTDADVRLIRRIERDIVERGRDLES-VINQYLKFVKPMHEQFIEPTKRYADVIIPRG 181 (198)
T ss_pred hcCeEEEEECChhHHHHHHHHHHhhhcCCCHHH-HHHHHHHhhhhhHHHhCccchhceeEEECCC
Confidence 4699999999999988886655 333332 1234556677788888777665444566544
No 81
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.37 E-value=1.3e-06 Score=74.91 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 012135 224 FCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 224 IvIEG~dGSGKSTLaKlLAk~ 244 (470)
|+|.|.+||||||+++.|+++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999997
No 82
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.34 E-value=5.5e-06 Score=77.66 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=41.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFY 435 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~ 435 (470)
.+-.+|||++|++++.+|+.+|++..+ .+..+++. .+.. +......+||.+. +.+++.+.|..
T Consensus 110 ~~~~vi~l~~s~e~l~~RL~~R~~~~~----~~i~~rl~-r~~~----~~~ad~~vi~~~~--------s~ee~~~~i~~ 172 (186)
T PRK10078 110 SALLPVCLQVSPEILRQRLENRGRENA----SEINARLA-RAAR----YQPQDCHTLNNDG--------SLRQSVDTLLT 172 (186)
T ss_pred CCEEEEEEeCCHHHHHHHHHHhCCCCH----HHHHHHHH-Hhhh----hccCCEEEEeCCC--------CHHHHHHHHHH
Confidence 456789999999999999998876532 12233442 2111 1122456777442 55788888776
Q ss_pred hhhh
Q 012135 436 LDGP 439 (470)
Q Consensus 436 ~I~~ 439 (470)
++..
T Consensus 173 ~l~~ 176 (186)
T PRK10078 173 LLHL 176 (186)
T ss_pred HHhh
Confidence 6543
No 83
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.33 E-value=7.3e-06 Score=80.47 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
.+|.|+|-|++||||||+++.|++. ++..
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~-~g~~ 33 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKK-ENLK 33 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 4567999999999999999999997 6754
No 84
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.31 E-value=2.1e-07 Score=87.83 Aligned_cols=56 Identities=25% Similarity=0.271 Sum_probs=36.2
Q ss_pred CCcEEEEEeCCHHHHHHHHH-----HhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEE
Q 012135 356 IPDGFIYLRASPDTCHKRMM-----LRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLA 413 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~-----kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VID 413 (470)
..|+.|||+++.++++.|.. .||+..|. +-..|. .+...|+.|+.+.....-.+|+
T Consensus 126 l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~-~~~~~~-~~~~~~~~~I~p~~~~ADivi~ 186 (194)
T PF00485_consen 126 LFDLKIFLDADEDLRLERRIQRDVAERGRSPEE-VIAQYE-RVRPGYERYIEPQKERADIVIP 186 (194)
T ss_dssp G-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHH-HHHHHH-THHHHHHHCTGGGGGG-SEEEE
T ss_pred cceeEEEecccHHHHHHHHhhhhccccCCccee-EEEEee-cCChhhhhheeccccccEEEEC
Confidence 46999999999999887743 45665553 223444 8889999999987644334444
No 85
>PRK14526 adenylate kinase; Provisional
Probab=98.30 E-value=1.2e-05 Score=77.97 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
|.|+|.|++||||||+++.|++. ++..
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~~-~~~~ 27 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSNE-LNYY 27 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 35889999999999999999986 6653
No 86
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.30 E-value=9.8e-06 Score=71.42 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 223 TFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
+|+|.|..||||||+++.|++. ++..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~-~~~~ 26 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK-LGLP 26 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 5899999999999999999997 6654
No 87
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.29 E-value=1.5e-05 Score=71.39 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 223 TFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
+|.|.|++||||||+++.|++. ++.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~-~~~ 25 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER-LGA 25 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh-cCC
Confidence 4789999999999999999986 554
No 88
>PRK08356 hypothetical protein; Provisional
Probab=98.29 E-value=3.1e-05 Score=73.27 Aligned_cols=38 Identities=24% Similarity=0.468 Sum_probs=27.0
Q ss_pred cEEEEEeCCHHHHHHHHHHhccccccCC-cHHHHHHHHH
Q 012135 358 DGFIYLRASPDTCHKRMMLRKRAEEGGV-SLDYLRSLHE 395 (470)
Q Consensus 358 DLvIyLda~pEv~leRI~kRgR~~E~~i-~~eYLe~L~e 395 (470)
..+|||++|++++.+|+.+|+...+... +.+.+.++.+
T Consensus 116 ~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~ 154 (195)
T PRK08356 116 GKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDE 154 (195)
T ss_pred CEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 5899999999999999999986433211 3444555543
No 89
>PLN02199 shikimate kinase
Probab=98.27 E-value=2.5e-05 Score=79.75 Aligned_cols=84 Identities=10% Similarity=0.095 Sum_probs=49.7
Q ss_pred cEEEEEeCCHHHHHHHHHH---hccccccCC-cHHH---HHHHHHHHHhhcCcCCCCCeEEEEccCCCcc-----cCCCC
Q 012135 358 DGFIYLRASPDTCHKRMML---RKRAEEGGV-SLDY---LRSLHEKHENWLFPFESGNHGVLAVSKLPLH-----IDNGL 425 (470)
Q Consensus 358 DLvIyLda~pEv~leRI~k---RgR~~E~~i-~~eY---Le~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~-----~~~~~ 425 (470)
..+|||++|++++.+||.. .+|+.-... ..+| ++.|.+.|++...-|.. .-.+|+...+... .++.+
T Consensus 196 G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~plY~~-Ad~~V~~~~~~~~~~~~~td~~s 274 (303)
T PLN02199 196 GISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTN-ANARVSLENIAAKRGYKNVSDLT 274 (303)
T ss_pred CeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHHHHHHh-CCEEEecccccccccccccCCCC
Confidence 5799999999999999985 335432211 1122 24455555554333333 2356773322222 23457
Q ss_pred chHHHHHHHHhhhhhHH
Q 012135 426 HPDIRDRVFYLDGPHMH 442 (470)
Q Consensus 426 ~eev~d~V~~~I~~~L~ 442 (470)
++++.++|++.+...+.
T Consensus 275 ~~ei~~eIl~~l~~~l~ 291 (303)
T PLN02199 275 PTEIAIEAFEQVLSFLE 291 (303)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88888888887776665
No 90
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.26 E-value=1.4e-05 Score=86.44 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=38.8
Q ss_pred cEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHH
Q 012135 358 DGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRV 433 (470)
Q Consensus 358 DLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V 433 (470)
+.+|||++|++++.+|+..|+|+..... .+.+..+.+....++.. +.+||++.. +++++.+.|
T Consensus 93 ~~vI~L~as~e~l~~Rl~~~~RPLl~~~-~e~l~~L~~~R~~lY~~-----~~~IDt~~~-------s~~e~~~~i 155 (488)
T PRK13951 93 EKTLFLYAPPEVLMERVTTENRPLLREG-KERIREIWERRKQFYTE-----FRGIDTSKL-------NEWETTALV 155 (488)
T ss_pred CeEEEEECCHHHHHHHhccCCCCCcccc-HHHHHHHHHHHHHHHhc-----ccEEECCCC-------CHHHHHHHH
Confidence 5689999999999999998888753321 23333333333333332 247887753 345555544
No 91
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.25 E-value=3.6e-05 Score=76.79 Aligned_cols=55 Identities=15% Similarity=0.068 Sum_probs=37.0
Q ss_pred EEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcC-------cCC-CCCeEEEEccCC
Q 012135 360 FIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLF-------PFE-SGNHGVLAVSKL 417 (470)
Q Consensus 360 vIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~-------~~~-~~~v~VIDvd~l 417 (470)
+|||++|.+++.+|+.+|+.. .++.+-+++..+.++.+.. ++. ...+.++|+|..
T Consensus 106 ~v~l~~~~e~~~~R~~~R~~~---~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~D~dgt 168 (300)
T PHA02530 106 EKVFDVPVEELVKRNRKRGER---AVPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAVIFDIDGT 168 (300)
T ss_pred EEEeCCCHHHHHHHHHccCcC---CCCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEEEEECCCc
Confidence 699999999999999999643 3455555555555554432 122 235788888864
No 92
>PLN02459 probable adenylate kinase
Probab=98.24 E-value=1.8e-05 Score=79.36 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=26.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
.+.++|.|+|-|++||||||+++.|++. +++.
T Consensus 25 ~~~~~~~ii~~G~PGsGK~T~a~~la~~-~~~~ 56 (261)
T PLN02459 25 AKGRNVNWVFLGCPGVGKGTYASRLSKL-LGVP 56 (261)
T ss_pred cccCccEEEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 3445678888999999999999999997 6654
No 93
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.23 E-value=4.3e-05 Score=70.89 Aligned_cols=152 Identities=14% Similarity=0.122 Sum_probs=87.4
Q ss_pred cCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCCCCccchhhhhh-----cCCCCCchHHHHHHHHHHHHHHHHh
Q 012135 228 GNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYY-----DAPERYAYTFQNYVFVTRVMQERES 302 (470)
Q Consensus 228 G~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY-----~dp~r~af~~Ql~Fla~R~~ql~~~ 302 (470)
|..||||||+++.|+++ |++.. ++ .+.... ...+++|- .|-.||.+.-.+ .+...+..
T Consensus 2 GVsG~GKStvg~~lA~~-lg~~f-id-----GDdlHp-----~aNi~KM~~GiPL~DdDR~pWL~~l---~~~~~~~~-- 64 (161)
T COG3265 2 GVSGSGKSTVGSALAER-LGAKF-ID-----GDDLHP-----PANIEKMSAGIPLNDDDRWPWLEAL---GDAAASLA-- 64 (161)
T ss_pred CCCccCHHHHHHHHHHH-cCCce-ec-----ccccCC-----HHHHHHHhCCCCCCcchhhHHHHHH---HHHHHHhh--
Confidence 88999999999999997 88653 21 111110 11344444 344577665332 12221111
Q ss_pred cCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCc-EEEEEeCCHHHHHHHHHHhcccc
Q 012135 303 SGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPD-GFIYLRASPDTCHKRMMLRKRAE 381 (470)
Q Consensus 303 ~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPD-LvIyLda~pEv~leRI~kRgR~~ 381 (470)
.++ .. .++ -++++- ..|+++...- .|+ .+|||+.+.+++++|++.|...+
T Consensus 65 ~~~--~~-----~vi-----~CSALK----------r~YRD~LR~~-------~~~~~Fv~L~g~~~~i~~Rm~~R~gHF 115 (161)
T COG3265 65 QKN--KH-----VVI-----ACSALK----------RSYRDLLREA-------NPGLRFVYLDGDFDLILERMKARKGHF 115 (161)
T ss_pred cCC--Cc-----eEE-----ecHHHH----------HHHHHHHhcc-------CCCeEEEEecCCHHHHHHHHHhcccCC
Confidence 111 11 111 112221 2455544332 233 57999999999999999999875
Q ss_pred ccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhhh
Q 012135 382 EGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGP 439 (470)
Q Consensus 382 E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~ 439 (470)
- +.+ .|...+..+=.+-....+..||++. +++++.+.++..++.
T Consensus 116 M---~~~---ll~SQfa~LE~P~~de~vi~idi~~--------~~e~vv~~~~~~l~~ 159 (161)
T COG3265 116 M---PAS---LLDSQFATLEEPGADEDVLTIDIDQ--------PPEEVVAQALAWLKE 159 (161)
T ss_pred C---CHH---HHHHHHHHhcCCCCCCCEEEeeCCC--------CHHHHHHHHHHHHhc
Confidence 4 333 3334455443444445788889886 678888888776654
No 94
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.22 E-value=5.2e-05 Score=72.51 Aligned_cols=72 Identities=14% Similarity=0.207 Sum_probs=44.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccc--cccCCcHHHHH-HHHHHH------HhhcCcCCCCCeEEEEccCCCcccCCCCc
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRA--EEGGVSLDYLR-SLHEKH------ENWLFPFESGNHGVLAVSKLPLHIDNGLH 426 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~--~E~~i~~eYLe-~L~e~Y------e~w~~~~~~~~v~VIDvd~lD~~~~~~~~ 426 (470)
.|++++|+||+.|+|++|+..|++. .... +.+-++ ++.-.+ .++++. .+.+.-||+++ ++
T Consensus 112 ~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DD-n~esikkR~et~~~~t~Pvi~~~e~--kg~l~~i~a~~--------~~ 180 (195)
T KOG3079|consen 112 DPDFVLFFDCPEETMLKRLLHRGQSNSRSDD-NEESIKKRLETYNKSTLPVIEYYEK--KGKLLKINAER--------SV 180 (195)
T ss_pred CCCEEEEEeCCHHHHHHHHHhhcccCCCCCC-chHHHHHHHHHHHHcchHHHHHHHc--cCcEEEecCCC--------CH
Confidence 4899999999999999999999876 2221 122222 222211 223332 23566777765 66
Q ss_pred hHHHHHHHHhhh
Q 012135 427 PDIRDRVFYLDG 438 (470)
Q Consensus 427 eev~d~V~~~I~ 438 (470)
+++..+|...|.
T Consensus 181 d~Vf~~v~~~id 192 (195)
T KOG3079|consen 181 DDVFEEVVTAID 192 (195)
T ss_pred HHHHHHHHHHhh
Confidence 777777666554
No 95
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.21 E-value=1.8e-05 Score=77.20 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLELRD 250 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~ 250 (470)
.+.|+|.|+.||||||+++.|+++ |++.+
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~-Lg~~y 32 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEK-LGFHY 32 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHH-hCCCe
Confidence 389999999999999999999998 88763
No 96
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=98.20 E-value=1.3e-05 Score=86.63 Aligned_cols=166 Identities=13% Similarity=0.132 Sum_probs=103.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCce-EeccCCccccccCCCCccchhhhhhcCCCCCchHHHHHHHHHHH
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANETLELRDLV-EIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRV 296 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~-Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~Fla~R~ 296 (470)
.+.+.+|+|||.|+|||-..++.|.+. ++.+++. ..+..|++. + ..+. | +-|+
T Consensus 296 ~~~~vlivfeG~DaAGKgg~I~rl~~~-ldPrg~~v~~~~~Pt~~------------E------~~~~------~-lwRf 349 (493)
T TIGR03708 296 RKRSLVLVFEGWDAAGKGGAIRRVTEA-LDARQYRVVPIAAPTDE------------E------KAQH------Y-LWRF 349 (493)
T ss_pred CCCCEEEEEEcccCCCCcHHHHHHHhh-cCCCeeEEEeCCCcCHH------------H------HcCc------H-HHHH
Confidence 356899999999999999999999986 7777642 223333211 0 0111 1 2444
Q ss_pred HHHHHhcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCC-CCCCcEEEEEeCCHHHHHHHHH
Q 012135 297 MQERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLP-GLIPDGFIYLRASPDTCHKRMM 375 (470)
Q Consensus 297 ~ql~~~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp-~lkPDLvIyLda~pEv~leRI~ 375 (470)
... .+..+.+.|+|||.|.+. ...-+ .|.+++.+|....+-...+...|- .-..=+-+||.+|.++..+|+.
T Consensus 350 ~~~---lP~~G~i~iFdRSwY~~v--lverv--~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~LhIsk~EQ~~R~~ 422 (493)
T TIGR03708 350 WRH---IPRRGRITIFDRSWYGRV--LVERV--EGFCSEAEWLRAYGEINDFEEQLTEHGAIVVKFWLHIDKEEQLRRFE 422 (493)
T ss_pred HHh---CCCCCeEEEEcCCccCCc--ceeee--cCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEcCHHHHHHHHH
Confidence 322 355588999999999984 22222 367777777543332222322221 0122367999999999999999
Q ss_pred Hhcccccc--CCc------HHHHHHHHHHHHhhcCcCC--CCCeEEEEccC
Q 012135 376 LRKRAEEG--GVS------LDYLRSLHEKHENWLFPFE--SGNHGVLAVSK 416 (470)
Q Consensus 376 kRgR~~E~--~i~------~eYLe~L~e~Ye~w~~~~~--~~~v~VIDvd~ 416 (470)
+|-....+ .++ .+.+..-..+|++.+.... ..|..||.++.
T Consensus 423 ~r~~~p~k~WK~t~~D~~~r~~w~~Y~~a~~~ml~~T~t~~APW~vI~a~d 473 (493)
T TIGR03708 423 ERENTPFKRYKITDEDWRNREKWDAYEDAVNDMIDRTSTIIAPWTLVEAND 473 (493)
T ss_pred HHhcCCccCCcCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEeCCC
Confidence 98755444 122 2334455566666655544 35899999985
No 97
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.20 E-value=1e-05 Score=77.70 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=26.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
|++++|.|.|.+||||||+++.|+++ ++..
T Consensus 1 ~~~~~i~i~G~~G~GKst~a~~l~~~-~~~~ 30 (197)
T PRK12339 1 MESTIHFIGGIPGVGKTSISGYIARH-RAID 30 (197)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh-cCCe
Confidence 56789999999999999999999997 6653
No 98
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.19 E-value=1e-05 Score=75.24 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=35.1
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHhcccccc---CCcHHHHHHHHHHHHhh
Q 012135 352 LPGLIPDGFIYLRASPDTCHKRMMLRKRAEEG---GVSLDYLRSLHEKHENW 400 (470)
Q Consensus 352 Lp~lkPDLvIyLda~pEv~leRI~kRgR~~E~---~i~~eYLe~L~e~Ye~w 400 (470)
+|....|++|.|++|-+++++|++.||....+ ++.-+.+.-+.+.-.+.
T Consensus 88 FperwfdlVvVLr~~~s~LY~RL~sRgY~e~Ki~eNiecEIfgv~~eea~eS 139 (176)
T KOG3347|consen 88 FPERWFDLVVVLRTPNSVLYDRLKSRGYSEKKIKENIECEIFGVVLEEARES 139 (176)
T ss_pred cchhheeEEEEEecCchHHHHHHHHcCCCHHHHhhhcchHHHHHHHHHHHHH
Confidence 34457799999999999999999999976543 34445555554444443
No 99
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=98.19 E-value=2.1e-05 Score=71.75 Aligned_cols=114 Identities=18% Similarity=0.178 Sum_probs=51.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCCCCccchhhhhhcCCC---C---CchHHHHHHHHHHHH
Q 012135 224 FCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPE---R---YAYTFQNYVFVTRVM 297 (470)
Q Consensus 224 IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~---r---~af~~Ql~Fla~R~~ 297 (470)
|+|.|..|+|||||++.|+++ + +..++|+. ..++...+.... . ....+|..++..+.+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~--g----~~~v~E~a----------r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 65 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR--G----YPVVPEYA----------REIIEEGGRRDRDTLPWEDDLLAFQEGILEQQLE 65 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH--T-----EEE--TT----------HHHHHHSSSS-TTSS-TT-THHHHHHH--HHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc--C----CeEEeecH----------HHHHHHhccccchhhhhcchHHHHHHHHHHHHHH
Confidence 899999999999999999985 3 23456653 123333322111 1 123355544444443
Q ss_pred HHHHhcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHH
Q 012135 298 QERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDT 369 (470)
Q Consensus 298 ql~~~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv 369 (470)
..... ....++++||+++.. ++|+.... +. .+.+ +..... .. ..|++|+|...++.
T Consensus 66 ~~~~~--~~~~~vi~Dr~~~d~-~aY~~~~~--~~-~~~~------l~~~~~--~~--~yd~v~~l~~~~~~ 121 (163)
T PF13521_consen 66 AEASA--KSSDVVICDRGPLDT-LAYSEFYF--GD-YPEE------LEREAR--LS--RYDLVFLLPPDPPW 121 (163)
T ss_dssp HHHHH--H-SSEEEESS-HHHH-HHHHHHHH--S----HH------HHHHHH--HS----SEEEEEE-----
T ss_pred HHHhh--cCCCcEEEeCChHHH-HHHHHHhc--Cc-chHH------HHHHHH--hC--CCCEEEEeCCcccc
Confidence 33322 125789999999854 45643322 21 1111 111111 12 67999999986643
No 100
>PRK06547 hypothetical protein; Provisional
Probab=98.17 E-value=1.6e-05 Score=74.61 Aligned_cols=42 Identities=10% Similarity=0.119 Sum_probs=31.7
Q ss_pred EEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCcCC
Q 012135 359 GFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFE 405 (470)
Q Consensus 359 LvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~ 405 (470)
++|||++|++++++|+.+|... ...|+.+....-+.|+..+.
T Consensus 120 ~~I~ld~~~~vr~~R~~~Rd~~-----~~~~~~~w~~~e~~~~~~~~ 161 (172)
T PRK06547 120 LTVWLDGPEALRKERALARDPD-----YAPHWEMWAAQEERHFARYD 161 (172)
T ss_pred EEEEEECCHHHHHHHHHhcCch-----hhHHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999633 24566666666666666554
No 101
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.16 E-value=9.4e-05 Score=72.18 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=26.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
|+.++|+|.|..||||||+++.|+++ ++..
T Consensus 2 ~~~~~i~i~g~~gsGksti~~~la~~-~~~~ 31 (225)
T PRK00023 2 MKAIVIAIDGPAGSGKGTVAKILAKK-LGFH 31 (225)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 45689999999999999999999987 7754
No 102
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.15 E-value=0.00023 Score=66.88 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=48.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFY 435 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~ 435 (470)
.|-.+|||++|++++.+|+.+|..+ .++.+-+..-...++.. ......+..||++. +++++.+.+..
T Consensus 98 ~~~~~v~l~a~~~~l~~Rl~~R~~~---~~~~~vl~~Q~~~~e~~--~~~e~~~~~~d~~~--------~~~~~~~~~~~ 164 (176)
T PRK09825 98 PNVHFLWLDGDYETILARMQRRAGH---FMPPDLLQSQFDALERP--CADEHDIARIDVNH--------DIENVTEQCRQ 164 (176)
T ss_pred CCEEEEEEeCCHHHHHHHHhcccCC---CCCHHHHHHHHHHcCCC--CCCcCCeEEEECCC--------CHHHHHHHHHH
Confidence 3568999999999999999999753 24555555443444422 11123578888886 45677777777
Q ss_pred hhhhhHH
Q 012135 436 LDGPHMH 442 (470)
Q Consensus 436 ~I~~~L~ 442 (470)
.+.+++.
T Consensus 165 ~~~~~~~ 171 (176)
T PRK09825 165 AVQAFRQ 171 (176)
T ss_pred HHHHHHh
Confidence 6665543
No 103
>PRK07667 uridine kinase; Provisional
Probab=98.15 E-value=3.6e-05 Score=72.96 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=33.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCcCC
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFE 405 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~ 405 (470)
..|.+||+++|++++++|+.+|.... ..+|..+...++..|+....
T Consensus 138 ~~d~~v~V~~~~~~~~~R~~~r~~~~----~~~~~~r~~~a~~~y~~~~~ 183 (193)
T PRK07667 138 FFHYMVYLDCPRETRFLRESEETQKN----LSKFKNRYWKAEDYYLETES 183 (193)
T ss_pred hceEEEEEECCHHHHHHHHhcccHhH----HHHHHHHhHHHHHHHHhhcC
Confidence 46999999999999999999875321 23566666677777766543
No 104
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.15 E-value=2.3e-05 Score=75.32 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=22.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccc
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRA 380 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~ 380 (470)
.+|.+|++++|.+++++|+.+|++.
T Consensus 133 ~~d~ii~V~a~~e~~~~Rl~~R~~~ 157 (208)
T PRK14731 133 GLDFIVVVAADTELRLERAVQRGMG 157 (208)
T ss_pred cCCeEEEEECCHHHHHHHHHHcCCC
Confidence 4699999999999999999999763
No 105
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=98.14 E-value=6.5e-06 Score=86.74 Aligned_cols=85 Identities=14% Similarity=0.095 Sum_probs=49.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHH-hccccccCCcHHHHHHHHH--HHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHH
Q 012135 356 IPDGFIYLRASPDTCHKRMML-RKRAEEGGVSLDYLRSLHE--KHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDR 432 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~k-RgR~~E~~i~~eYLe~L~e--~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~ 432 (470)
..|.+||+++|+++.++|+.+ ||...+. ....+.. .++.... ..-.+|+.+. +.++....
T Consensus 123 ~~D~iI~V~ap~e~ri~Rl~~rRg~s~~~-----a~~ri~~Q~~~e~k~~----~AD~vIdN~~--------s~e~l~~~ 185 (395)
T PRK03333 123 LFHLVVVVDADVEVRVRRLVEQRGMAEAD-----ARARIAAQASDEQRRA----VADVWLDNSG--------TPDELVEA 185 (395)
T ss_pred hCCEEEEEECCHHHHHHHHHhcCCCCHHH-----HHHHHHhcCChHHHHH----hCCEEEECCC--------CHHHHHHH
Confidence 459999999999999999988 4544332 1111211 1111111 1125566332 45777878
Q ss_pred HHHhhhhhHHhhh---------hcCCeEEEecCC
Q 012135 433 VFYLDGPHMHSSI---------QKVPALVLDCEP 457 (470)
Q Consensus 433 V~~~I~~~L~~~i---------~~~p~l~~d~~~ 457 (470)
|.+.++..+.-++ +.-|+-+++.++
T Consensus 186 v~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~ydp 219 (395)
T PRK03333 186 VRALWADRLLPFAHNLRARRRAARAPPRLVPADP 219 (395)
T ss_pred HHHHHHHHHhhHHHHHhcCCCCCCCCceEeCCCC
Confidence 7777777665333 445666776664
No 106
>PRK06696 uridine kinase; Validated
Probab=98.12 E-value=7.9e-06 Score=78.92 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=38.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccc---cCCcHHHHHHHHHHHHhhcCcCC--CCCeEEEEcc
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEE---GGVSLDYLRSLHEKHENWLFPFE--SGNHGVLAVS 415 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E---~~i~~eYLe~L~e~Ye~w~~~~~--~~~v~VIDvd 415 (470)
..|++||+++|.+++++|+..|.+..- ......|.++....++.|+.... ...-.+||.+
T Consensus 146 ~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~~~~~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~ 210 (223)
T PRK06696 146 LWDYKIFLDTDFEVSRRRGAKRDTEAFGSYEEAEKMYLARYHPAQKLYIAEANPKERADVVIDNS 210 (223)
T ss_pred hCCEEEEEECCHHHHHHHHHHhhhhhhCCchHHHHHHHHHHhHHHHHHHhhcChHhhCeEEEECC
Confidence 458999999999999999988863221 11234666666666666654331 2223556555
No 107
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.11 E-value=2.7e-05 Score=73.94 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhcc
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKR 379 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR 379 (470)
.+|.+|++++|++++++|+.+|+.
T Consensus 124 ~~D~vi~V~a~~e~~~~Rl~~R~~ 147 (194)
T PRK00081 124 LVDRVLVVDAPPETQLERLMARDG 147 (194)
T ss_pred hCCeEEEEECCHHHHHHHHHHcCC
Confidence 469999999999999999999854
No 108
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.11 E-value=0.00035 Score=65.59 Aligned_cols=170 Identities=19% Similarity=0.189 Sum_probs=92.8
Q ss_pred CCCc-EEEEEcCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCCCCccchhhhhh-----cCCCCCchHHHHHHH
Q 012135 219 KKRI-TFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYY-----DAPERYAYTFQNYVF 292 (470)
Q Consensus 219 ~K~~-~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY-----~dp~r~af~~Ql~Fl 292 (470)
++.+ .|+|-|..||||||..++|+++ |+... ++ .+.+.. ....++|- .|..||.+.--+.-.
T Consensus 9 ~~~k~~i~vmGvsGsGKSTigk~L~~~-l~~~F-~d-----gDd~Hp-----~~NveKM~~GipLnD~DR~pWL~~i~~~ 76 (191)
T KOG3354|consen 9 GPFKYVIVVMGVSGSGKSTIGKALSEE-LGLKF-ID-----GDDLHP-----PANVEKMTQGIPLNDDDRWPWLKKIAVE 76 (191)
T ss_pred CCCceeEEEEecCCCChhhHHHHHHHH-hCCcc-cc-----cccCCC-----HHHHHHHhcCCCCCcccccHHHHHHHHH
Confidence 3444 8999999999999999999998 88653 21 111111 01234443 356688775333221
Q ss_pred HHHHHHHHHhcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhh-cCCCCCC---cEEEEEeCCHH
Q 012135 293 VTRVMQERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVS-VLPGLIP---DGFIYLRASPD 368 (470)
Q Consensus 293 a~R~~ql~~~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~-~Lp~lkP---DLvIyLda~pE 368 (470)
+. . +...+ + ++++.- +++. ..|+++...-.. .=|+..| =.+|||.++.+
T Consensus 77 ~~-~----~l~~~--q-----~vVlAC-----SaLK----------k~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~e 129 (191)
T KOG3354|consen 77 LR-K----ALASG--Q-----GVVLAC-----SALK----------KKYRDILRHSLKDGKPGKCPESQLHFILLSASFE 129 (191)
T ss_pred HH-H----HhhcC--C-----eEEEEh-----HHHH----------HHHHHHHHhhcccCCccCCccceEEEeeeeccHH
Confidence 11 1 11111 1 233321 2221 234444333111 0011122 25899999999
Q ss_pred HHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCcC-CCCCeEEEEccCCCcccCCCCchHHHHHHHHhhhhh
Q 012135 369 TCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPF-ESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPH 440 (470)
Q Consensus 369 v~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~-~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~~ 440 (470)
++.+|+.+|...+ ++.+-++ ..+..+-.+. ...++..|+++. .+.+++++.|.+++...
T Consensus 130 vi~~Rl~~R~gHF---Mp~~lle---SQf~~LE~p~~~e~div~isv~~-------~~~e~iv~tI~k~~~~~ 189 (191)
T KOG3354|consen 130 VILKRLKKRKGHF---MPADLLE---SQFATLEAPDADEEDIVTISVKT-------YSVEEIVDTIVKMVALN 189 (191)
T ss_pred HHHHHHhhccccc---CCHHHHH---HHHHhccCCCCCccceEEEeecc-------CCHHHHHHHHHHHHHhh
Confidence 9999999998764 4444333 3344332222 223567777664 26788888888876643
No 109
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.08 E-value=3.3e-05 Score=73.74 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
++|+|.|++||||||+++.|++. ++..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~-~g~~ 28 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQ-KGIP 28 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh-hCCe
Confidence 47999999999999999999985 4653
No 110
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.05 E-value=0.00014 Score=73.80 Aligned_cols=72 Identities=22% Similarity=0.265 Sum_probs=42.3
Q ss_pred cEEEEEeCCHHHHHHHHHH--hccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHH
Q 012135 358 DGFIYLRASPDTCHKRMML--RKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFY 435 (470)
Q Consensus 358 DLvIyLda~pEv~leRI~k--RgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~ 435 (470)
-.+|||+++++++++|+.+ |.|+.-... +..+.+....+. +.++....-.+||++.+ +.++++++|..
T Consensus 87 ~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~--~l~e~I~~eR~~-l~pl~~~ADivIDTs~l-------s~~el~e~I~~ 156 (288)
T PRK05416 87 VRVLFLDASDEVLIRRYSETRRRHPLSGDG--SLLEGIELEREL-LAPLRERADLVIDTSEL-------SVHQLRERIRE 156 (288)
T ss_pred EEEEEEECCHHHHHHHHhhcccCCCccCCc--cHHHHHHHHHhh-hhhHHHhCCEEEECCCC-------CHHHHHHHHHH
Confidence 4679999999999999975 334432221 222323222221 11122112378888864 45888888887
Q ss_pred hhhh
Q 012135 436 LDGP 439 (470)
Q Consensus 436 ~I~~ 439 (470)
.+..
T Consensus 157 ~l~~ 160 (288)
T PRK05416 157 RFGG 160 (288)
T ss_pred HHhc
Confidence 7644
No 111
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.05 E-value=2.2e-05 Score=71.91 Aligned_cols=70 Identities=19% Similarity=0.172 Sum_probs=40.0
Q ss_pred cEEEEEeCCHHHHHHHHHHhcc-ccccCCcH--HHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHH
Q 012135 358 DGFIYLRASPDTCHKRMMLRKR-AEEGGVSL--DYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVF 434 (470)
Q Consensus 358 DLvIyLda~pEv~leRI~kRgR-~~E~~i~~--eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~ 434 (470)
..+|||+++++++.+|+..++. +.-..... ..++.+. ....++... ...++|++.. +++++.++|+
T Consensus 86 g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~-~R~~~Y~~~---a~~~v~~~~~-------~~~~i~~~i~ 154 (158)
T PF01202_consen 86 GLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLF-EREPLYEQA---ADIVVDTDGS-------PPEEIAEEIL 154 (158)
T ss_dssp SEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHH-HHHHHHHHH---SSEEEETSSC-------HHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHH-HHHHHHHhc---CeEEEeCCCC-------CHHHHHHHHH
Confidence 5899999999999999988764 43322111 2223332 222222222 3477887752 3388888888
Q ss_pred Hhhh
Q 012135 435 YLDG 438 (470)
Q Consensus 435 ~~I~ 438 (470)
+.|+
T Consensus 155 ~~l~ 158 (158)
T PF01202_consen 155 EFLK 158 (158)
T ss_dssp HHH-
T ss_pred HHhC
Confidence 7653
No 112
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.02 E-value=1.7e-05 Score=75.92 Aligned_cols=23 Identities=9% Similarity=0.161 Sum_probs=21.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhc
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRK 378 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRg 378 (470)
.+|.+||+++|++++++|+.+|+
T Consensus 125 ~~D~vi~V~a~~e~ri~Rl~~R~ 147 (200)
T PRK14734 125 KMDLVVVVDVDVEERVRRLVEKR 147 (200)
T ss_pred cCCeEEEEECCHHHHHHHHHHcC
Confidence 57999999999999999998873
No 113
>PLN02348 phosphoribulokinase
Probab=98.01 E-value=1.7e-05 Score=83.63 Aligned_cols=62 Identities=19% Similarity=0.161 Sum_probs=39.6
Q ss_pred CCcEEEEEeCCHHHHHHHH-----HHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCc
Q 012135 356 IPDGFIYLRASPDTCHKRM-----MLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPL 419 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI-----~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~ 419 (470)
..|+.|||++++++.+.|. .+||+..|. + ...++.....|..++.+.....-.||++-...+
T Consensus 182 l~D~~IyVd~~~dvrl~RRI~RD~~eRG~S~Ee-V-~~~i~ar~pd~~~yI~pqk~~ADiVI~v~p~~l 248 (395)
T PLN02348 182 LLDFSIYLDISDDVKFAWKIQRDMAERGHSLES-I-KASIEARKPDFDAYIDPQKQYADVVIEVLPTQL 248 (395)
T ss_pred cCcEEEEEECCHHHHHHHHHHhhHhhcCCCHHH-H-HHHHHhcCcchhhhcccccccCCEEEEecCCcC
Confidence 5799999999999985443 345655443 2 233444456667777666655557777765444
No 114
>PRK15453 phosphoribulokinase; Provisional
Probab=98.01 E-value=9.7e-06 Score=82.22 Aligned_cols=49 Identities=20% Similarity=0.087 Sum_probs=38.2
Q ss_pred CCcEEEEEeCCHHHHHHH-H----HHhccccccCCcHHHHHHHHHHHHhhcCcCCC
Q 012135 356 IPDGFIYLRASPDTCHKR-M----MLRKRAEEGGVSLDYLRSLHEKHENWLFPFES 406 (470)
Q Consensus 356 kPDLvIyLda~pEv~leR-I----~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~ 406 (470)
..|+.||++.+.++++.| | .+||++.|. +-.+|+++. ..|..|+.+...
T Consensus 146 ~~DlkIfVdp~~dlr~irRI~RD~~ERGrs~Es-Vi~qilrrm-Pdy~~yI~PQ~~ 199 (290)
T PRK15453 146 HVDLLIGVVPIVNLEWIQKIHRDTSERGYSREA-VMDTILRRM-PDYINYITPQFS 199 (290)
T ss_pred hCCeeEeeCCcHhHHHHHHHHhhhHhhCCCHHH-HHHHHHHhC-ChHhhhCCCCcc
Confidence 579999999999999644 3 568988885 556788886 889988777543
No 115
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.01 E-value=0.00018 Score=69.98 Aligned_cols=28 Identities=21% Similarity=0.439 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
.++|+|.|+.||||||+++.|+++ ++..
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~-~~~~ 29 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEK-LGYA 29 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 468999999999999999999987 6653
No 116
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.01 E-value=0.00014 Score=79.77 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=44.4
Q ss_pred cEEEEEeCCHHHHHHHHHHhc-cccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHh
Q 012135 358 DGFIYLRASPDTCHKRMMLRK-RAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYL 436 (470)
Q Consensus 358 DLvIyLda~pEv~leRI~kRg-R~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~ 436 (470)
..+|||+++++++.+|+..+. |+.-...+.+-++.+.+..+.++... .-.+||++.. +++++.+.|++.
T Consensus 104 g~vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~R~~~Y~~~---Ad~~i~~~~~-------~~~~~~~~i~~~ 173 (542)
T PRK14021 104 GRVVYLDADPKEAMERANRGGGRPMLNGDANKRWKKLFKQRDPVFRQV---ANVHVHTRGL-------TPQAAAKKLIDM 173 (542)
T ss_pred CEEEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhh---CCEEEECCCC-------CHHHHHHHHHHH
Confidence 489999999999999997543 44322212233444444433344332 2366776643 568888888887
Q ss_pred hhh
Q 012135 437 DGP 439 (470)
Q Consensus 437 I~~ 439 (470)
+..
T Consensus 174 ~~~ 176 (542)
T PRK14021 174 VAE 176 (542)
T ss_pred HHh
Confidence 754
No 117
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.00 E-value=6e-05 Score=72.18 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=21.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhc
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRK 378 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRg 378 (470)
..|.+||+++|++++++|+.+|+
T Consensus 121 ~~D~vi~V~a~~e~r~~RL~~R~ 143 (196)
T PRK14732 121 LCDATVTVDSDPEESILRTISRD 143 (196)
T ss_pred hCCEEEEEECCHHHHHHHHHHcC
Confidence 46999999999999999999995
No 118
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.00 E-value=0.00021 Score=67.62 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
|.|.|-|++||||||||+.|++. ++..
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~-~~i~ 27 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK-LGLP 27 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 56899999999999999999997 6653
No 119
>PRK06761 hypothetical protein; Provisional
Probab=97.98 E-value=0.00037 Score=70.74 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=26.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELRD 250 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~ 250 (470)
|++++|+|+|++||||||+++.|+++ +...+
T Consensus 1 mm~~lIvI~G~~GsGKTTla~~L~~~-L~~~g 31 (282)
T PRK06761 1 MMTKLIIIEGLPGFGKSTTAKMLNDI-LSQNG 31 (282)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh-cCcCc
Confidence 34679999999999999999999997 76544
No 120
>PRK01184 hypothetical protein; Provisional
Probab=97.97 E-value=0.00012 Score=68.01 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=22.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccc
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRA 380 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~ 380 (470)
.+..+|++++|++++++|+..|++.
T Consensus 103 ~~~~~i~v~~~~~~~~~Rl~~R~~~ 127 (184)
T PRK01184 103 EDFILIAIHAPPEVRFERLKKRGRS 127 (184)
T ss_pred cccEEEEEECCHHHHHHHHHHcCCC
Confidence 3568999999999999999999864
No 121
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=97.94 E-value=5.9e-06 Score=78.28 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
|+|+|+|.+||||||+++.|++ +++.
T Consensus 1 ~iIglTG~igsGKStv~~~l~~--~G~~ 26 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE--LGFP 26 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH--TT-E
T ss_pred CEEEEECCCcCCHHHHHHHHHH--CCCC
Confidence 6899999999999999999997 4654
No 122
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.94 E-value=0.0002 Score=69.48 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=36.8
Q ss_pred cchhhhhhhhhhhhhhhhccCCCCCCCCCCCCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 190 NHAESITTFIKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 190 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
+.++++.++|.+...+-.+ ...++.+|+|.|+.|||||||++.|+.. +..
T Consensus 10 ~~~~~~~~~l~~~~~~~~~--------~~~~~~iigi~G~~GsGKTTl~~~L~~~-l~~ 59 (229)
T PRK09270 10 EEIEAVHKPLLRRLAALQA--------EPQRRTIVGIAGPPGAGKSTLAEFLEAL-LQQ 59 (229)
T ss_pred HhHHHHHHHHHHHHHHHHh--------cCCCCEEEEEECCCCCCHHHHHHHHHHH-hhh
Confidence 4566666777666643332 1246899999999999999999999986 554
No 123
>PRK12338 hypothetical protein; Provisional
Probab=97.93 E-value=0.00013 Score=75.30 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=26.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
|++.+|+|.|.+||||||+++.|++. ++..
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~-l~~~ 31 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELART-LNIK 31 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH-CCCe
Confidence 46789999999999999999999997 7764
No 124
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.92 E-value=2.3e-05 Score=79.06 Aligned_cols=59 Identities=17% Similarity=0.086 Sum_probs=44.2
Q ss_pred CCcEEEEEeCCHHHHHHH-H----HHhccccccCCcHHHHHHHHHHHHhhcCcCCC------CCeEEEEccC
Q 012135 356 IPDGFIYLRASPDTCHKR-M----MLRKRAEEGGVSLDYLRSLHEKHENWLFPFES------GNHGVLAVSK 416 (470)
Q Consensus 356 kPDLvIyLda~pEv~leR-I----~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~------~~v~VIDvd~ 416 (470)
..|+.||++.+.++++.| | .+|||+.|. +-.+|++++ ..|..|+.+... +.+.++|+++
T Consensus 140 ~~DlkIfVd~~~dlr~irRI~RD~~ERGrs~Es-Vi~qilrrm-pdy~~yI~PQ~~~tDI~fqr~p~vdts~ 209 (277)
T cd02029 140 HADLLVGVVPIINLEWIQKIHRDTAERGYSAEA-VMDTILRRM-PDYINYICPQFSRTDINFQRVPTVDTSN 209 (277)
T ss_pred hCCeEEEecCcHHHHHHHHHHhhhHhhCCCHHH-HHHHHHHhC-chHHhhCCcccccCcEEEeccCcccCCC
Confidence 569999999999999644 3 468998885 557899888 999999887653 2334556554
No 125
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.92 E-value=8.8e-05 Score=69.56 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=21.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhc
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRK 378 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRg 378 (470)
..|.+||+++|++++++|+.+|+
T Consensus 123 ~~D~vv~V~~~~~~~~~Rl~~R~ 145 (188)
T TIGR00152 123 LCDRVIVVDVSPQLQLERLMQRD 145 (188)
T ss_pred hCCEEEEEECCHHHHHHHHHHcC
Confidence 56999999999999999999986
No 126
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.91 E-value=0.00016 Score=68.54 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=43.3
Q ss_pred CCCcEEEEEeCCHHHHHHHH-H--HhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHH
Q 012135 355 LIPDGFIYLRASPDTCHKRM-M--LRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRD 431 (470)
Q Consensus 355 lkPDLvIyLda~pEv~leRI-~--kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d 431 (470)
+.||.+|.|.++|++++.|= + .|.|+.|......-.+..+..+---+.-.....+.+|.-.. ..+++..+
T Consensus 108 l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~nR~aA~a~A~~~gatVkIV~n~~-------~~~e~Aa~ 180 (189)
T COG2019 108 LNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEMNRAAAMAYAILLGATVKIVENHE-------GDPEEAAE 180 (189)
T ss_pred cCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeCCC-------CCHHHHHH
Confidence 48999999999999997663 2 35566654222221222222221112222334566666552 25688888
Q ss_pred HHHHhhh
Q 012135 432 RVFYLDG 438 (470)
Q Consensus 432 ~V~~~I~ 438 (470)
+|+..|.
T Consensus 181 eiv~~l~ 187 (189)
T COG2019 181 EIVELLD 187 (189)
T ss_pred HHHHHHh
Confidence 8877664
No 127
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.89 E-value=0.00035 Score=66.25 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++.+|+|.|..||||||+++.|++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999999986
No 128
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=97.88 E-value=0.00011 Score=72.96 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
++|+|+|.+||||||+++.|++. ++.
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~-~G~ 27 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREE-HHI 27 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-cCC
Confidence 47999999999999999999975 454
No 129
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.87 E-value=0.00013 Score=67.97 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=25.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
..++.+|+|.|.+||||||+++.|+.. +.
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~-l~ 43 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKK-LE 43 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH-HH
Confidence 367899999999999999999999986 53
No 130
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.86 E-value=0.00018 Score=68.68 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=27.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCc
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDL 251 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~ 251 (470)
.++.+|=|+|..||||||++..|.+. |...++
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~-L~~~G~ 52 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEK-LFAKGY 52 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH-HHHcCC
Confidence 46789999999999999999999997 665554
No 131
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.86 E-value=0.00065 Score=62.86 Aligned_cols=67 Identities=16% Similarity=0.125 Sum_probs=43.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCcCCC--CCeEEEEccCCCcccCCCCchHHHHHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFES--GNHGVLAVSKLPLHIDNGLHPDIRDRV 433 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~--~~v~VIDvd~lD~~~~~~~~eev~d~V 433 (470)
.|=.+|||++|++++.+|+..|..+. .+.+.+..-...++ +... ..+.+||++. +++++.+.+
T Consensus 90 ~~~~~v~l~a~~~~l~~Rl~~R~~~~---a~~~vl~~Q~~~~e----p~~~~e~~~~~id~~~--------~~~~~~~~~ 154 (163)
T PRK11545 90 PNLSFIYLKGDFDVIESRLKARKGHF---FKTQMLVTQFETLQ----EPGADETDVLVVDIDQ--------PLEGVVAST 154 (163)
T ss_pred CCEEEEEEECCHHHHHHHHHhccCCC---CCHHHHHHHHHHcC----CCCCCCCCEEEEeCCC--------CHHHHHHHH
Confidence 34588999999999999999997542 35555553333333 3322 2467777775 446777776
Q ss_pred HHhh
Q 012135 434 FYLD 437 (470)
Q Consensus 434 ~~~I 437 (470)
+..+
T Consensus 155 ~~~~ 158 (163)
T PRK11545 155 IEVI 158 (163)
T ss_pred HHHH
Confidence 6655
No 132
>PRK07261 topology modulation protein; Provisional
Probab=97.84 E-value=6.2e-05 Score=70.19 Aligned_cols=26 Identities=15% Similarity=0.392 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
+.|+|.|+.||||||+++.|++. ++.
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~-~~~ 26 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH-YNC 26 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH-hCC
Confidence 46999999999999999999986 554
No 133
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.84 E-value=0.00026 Score=71.22 Aligned_cols=151 Identities=15% Similarity=0.109 Sum_probs=67.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCCCc-eEeccCCccccccCCCCccchhhhhhcCCCCCchHH-HHHHHHHHHHHH
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTF-QNYVFVTRVMQE 299 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~-~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~-Ql~Fla~R~~ql 299 (470)
.+|+|+|.+||||||+++.|++. +..... +.++.+.. ..+-..-|.++..+...- .+.-...|.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~-~~~~~~~v~~i~~~~----------~~~~~~~y~~~~~Ek~~R~~l~s~v~r~--- 67 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY-LEEKGKEVVIISDDS----------LGIDRNDYADSKKEKEARGSLKSAVERA--- 67 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH-HHHTT--EEEE-THH----------HH-TTSSS--GGGHHHHHHHHHHHHHHH---
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH-HHhcCCEEEEEcccc----------cccchhhhhchhhhHHHHHHHHHHHHHh---
Confidence 38999999999999999999996 554321 22232210 001111133332221111 111111111
Q ss_pred HHhcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHHHHHHhcc
Q 012135 300 RESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRKR 379 (470)
Q Consensus 300 ~~~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~leRI~kRgR 379 (470)
. ....++|+|-.-| +..+- |+.|+ +..... .+-.+||++++.++|++|=.+|+.
T Consensus 68 ---l-s~~~iVI~Dd~nY-----iKg~R----------Yelyc-----lAr~~~--~~~c~i~~~~~~e~~~~~N~~R~~ 121 (270)
T PF08433_consen 68 ---L-SKDTIVILDDNNY-----IKGMR----------YELYC-----LARAYG--TTFCVIYCDCPLETCLQRNSKRPE 121 (270)
T ss_dssp ---H-TT-SEEEE-S--------SHHHH----------HHHHH-----HHHHTT---EEEEEEEE--HHHHHHHHHHTT-
T ss_pred ---h-ccCeEEEEeCCch-----HHHHH----------HHHHH-----HHHHcC--CCEEEEEECCCHHHHHHhhhccCC
Confidence 1 1235666553322 22222 23343 222222 567999999999999999988875
Q ss_pred ccccCCcHHHHHHHHHHHHhhcCcCC-CCCeEEEEc
Q 012135 380 AEEGGVSLDYLRSLHEKHENWLFPFE-SGNHGVLAV 414 (470)
Q Consensus 380 ~~E~~i~~eYLe~L~e~Ye~w~~~~~-~~~v~VIDv 414 (470)
+. ..+.+-++.+...||.=-.... ..+..+|+.
T Consensus 122 ~~--~~~~e~i~~m~~RfE~P~~~nrWD~plf~i~~ 155 (270)
T PF08433_consen 122 PE--RYPEETIDDMIQRFEEPDPKNRWDSPLFTIDS 155 (270)
T ss_dssp S----S-HHHHHHHHHH---TTSS-GGGS-SEEEE-
T ss_pred CC--CCCHHHHHHHHHHhcCCCCCCCccCCeEEEec
Confidence 42 2556778888888886222111 124566664
No 134
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.83 E-value=3.2e-05 Score=85.36 Aligned_cols=57 Identities=11% Similarity=0.009 Sum_probs=39.6
Q ss_pred CCcEEEEEeCCHHHHH-HHH----HHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEE
Q 012135 356 IPDGFIYLRASPDTCH-KRM----MLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLA 413 (470)
Q Consensus 356 kPDLvIyLda~pEv~l-eRI----~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VID 413 (470)
..|+.||++++.+.++ +|| ..||+..|. +-..|.+.+...|+.|+.+.....-.+|+
T Consensus 176 LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~Es-Vi~q~~~~VkP~y~~FIeP~kk~ADIII~ 237 (656)
T PLN02318 176 LLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEE-IIHQISETVYPMYKAFIEPDLQTAHIKIV 237 (656)
T ss_pred hCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHH-HHHHHHHhhcchHHHHhCcchhcceEEEe
Confidence 5699999998766653 444 456776653 33577788999999999986654445553
No 135
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.83 E-value=0.00022 Score=69.06 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
.++.|+|.|.+||||||+++.|++. ++..
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~-lg~~ 33 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEK-LNLN 33 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHH-cCCe
Confidence 4578999999999999999999975 6654
No 136
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.82 E-value=9.5e-05 Score=70.64 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhcc
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKR 379 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR 379 (470)
..|+.|||++|++++++|..+|..
T Consensus 130 l~D~~Ifvd~~~d~~~~Rr~~R~~ 153 (187)
T cd02024 130 LFDIRYFLRVPYETCKRRREARTG 153 (187)
T ss_pred hcCceeEecCCHHHHHHHHHHcCC
Confidence 569999999999999999998853
No 137
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.82 E-value=0.0001 Score=66.52 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=18.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHH
Q 012135 355 LIPDGFIYLRASPDTCHKRMML 376 (470)
Q Consensus 355 lkPDLvIyLda~pEv~leRI~k 376 (470)
..||.+|+|++|.+++.+|+..
T Consensus 101 ~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 101 IPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp SEESEEEEEE--HHHHHHHHHT
T ss_pred cchheeeccccchhhhhhhccc
Confidence 3799999999999999999987
No 138
>PLN02422 dephospho-CoA kinase
Probab=97.81 E-value=7.1e-05 Score=73.87 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhc
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRK 378 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRg 378 (470)
..|.+|++++|+++.++|+.+|+
T Consensus 125 ~~D~vI~V~a~~e~ri~RL~~R~ 147 (232)
T PLN02422 125 WTKPVVVVWVDPETQLERLMARD 147 (232)
T ss_pred hCCEEEEEECCHHHHHHHHHHcC
Confidence 46999999999999999999996
No 139
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.77 E-value=8.2e-05 Score=69.35 Aligned_cols=30 Identities=27% Similarity=0.333 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELRD 250 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~ 250 (470)
|+.+|-|.|..||||||+++.|.++ |...+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~-L~~~g 30 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERR-LFARG 30 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHH-HHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH-HHHcC
Confidence 5789999999999999999999997 65444
No 140
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.76 E-value=0.00077 Score=62.05 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 221 RITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+.+|+|.|+.||||||+++.|++.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHcc
Confidence 578999999999999999999985
No 141
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.74 E-value=0.00062 Score=64.64 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++++|+|.|+.||||||+++.|.++
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999999999876
No 142
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.72 E-value=5.7e-05 Score=73.46 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 223 TFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
+|+|.|+.||||||+++.|+.. +.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~-l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL-LS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH-Hh
Confidence 5899999999999999999986 64
No 143
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.72 E-value=0.0002 Score=69.19 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
.++|+|+|.+||||||+++.+++ ++..
T Consensus 2 ~~iIglTG~igsGKStva~~~~~--~G~~ 28 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE--LGFP 28 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH--cCCe
Confidence 47899999999999999999997 4554
No 144
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.71 E-value=0.0014 Score=74.15 Aligned_cols=77 Identities=14% Similarity=0.038 Sum_probs=46.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHH-HH--hhcCcCC-CCCeEEEEccCCCcccCCCCchHHHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEK-HE--NWLFPFE-SGNHGVLAVSKLPLHIDNGLHPDIRD 431 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~-Ye--~w~~~~~-~~~v~VIDvd~lD~~~~~~~~eev~d 431 (470)
..|+-|||++++++..+|..++... ... .+-++.+... +. +.+.+.. .....+||.+.+++ +++++
T Consensus 154 ~a~~K~~l~A~~~~Ra~Rr~~~~~~--~~~-~~~~~~~~~Rd~~d~R~~~pl~~~~da~~idts~~~~-------~~v~~ 223 (712)
T PRK09518 154 DAEVRILLTAREEVRQARRSGQDRS--ETP-GVVLEDVAARDEADSKVTSFLSAADGVTTLDNSDLDF-------DETLD 223 (712)
T ss_pred CCCeEEEEECCHHHHHHHHHHhhhc--CCH-HHHHHHHHHHhhhcccccCCCCCCCCeEEEECCCCCH-------HHHHH
Confidence 4679999999999998887766432 110 1122222111 11 1122221 23568999998755 88988
Q ss_pred HHHHhhhhhHH
Q 012135 432 RVFYLDGPHMH 442 (470)
Q Consensus 432 ~V~~~I~~~L~ 442 (470)
.|..+|.+.+.
T Consensus 224 ~i~~~i~~~~~ 234 (712)
T PRK09518 224 LLIGLVEDAIE 234 (712)
T ss_pred HHHHHHHhhhh
Confidence 88888866554
No 145
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.70 E-value=0.00023 Score=71.82 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+.+|+|.|..|+||||+++.|++.
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~l 105 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQAL 105 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHHHH
Confidence 56789999999999999999999985
No 146
>PRK05439 pantothenate kinase; Provisional
Probab=97.70 E-value=0.00015 Score=74.51 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=25.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
..++.+|+|.|..||||||+++.|++. ++
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~-l~ 111 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQAL-LS 111 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH-HH
Confidence 356789999999999999999999985 54
No 147
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.65 E-value=2.8e-05 Score=73.08 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 223 TFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
+|+|.|..||||||+++.|++. ++.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~-l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ-LRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH-HHH
Confidence 5899999999999999999987 653
No 148
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.63 E-value=0.0015 Score=61.51 Aligned_cols=26 Identities=15% Similarity=0.446 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+++.+|+|.|++||||||+++.|++.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 47889999999999999999999986
No 149
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.62 E-value=0.00085 Score=64.43 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+|++|+|.|+.|+||||+++.|-+.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999999986
No 150
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.60 E-value=0.00028 Score=65.92 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=21.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhc
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRK 378 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRg 378 (470)
..|.+||+++|+++.++|+.+|.
T Consensus 121 ~~D~vv~V~a~~~~ri~Rl~~Rd 143 (179)
T cd02022 121 LVDRVIVVDAPPEIQIERLMKRD 143 (179)
T ss_pred hCCeEEEEECCHHHHHHHHHHcC
Confidence 56999999999999999999885
No 151
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.57 E-value=0.001 Score=63.07 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=23.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHhhh
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANETL 246 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~~L 246 (470)
+..++.+|.+.|.+||||||++..+.+. +
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~-~ 39 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEE-F 39 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHH-T
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhh-c
Confidence 4578999999999999999999999886 5
No 152
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.56 E-value=0.0031 Score=69.76 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=26.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
-+++.+|+|.|..||||||+++.|++. |+.
T Consensus 389 ~~~g~~Ivl~Gl~GSGKSTia~~La~~-L~~ 418 (568)
T PRK05537 389 HKQGFTVFFTGLSGAGKSTIAKALMVK-LME 418 (568)
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHH-hhh
Confidence 346789999999999999999999997 664
No 153
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=97.56 E-value=0.00088 Score=75.08 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
.+.|+|.|+.||||||+++.|+++ |++.
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~-~~~~ 469 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEA-LGYH 469 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHH-hCCe
Confidence 568999999999999999999998 7765
No 154
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.00046 Score=68.97 Aligned_cols=166 Identities=17% Similarity=0.182 Sum_probs=100.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCce-EeccCCccccccCCCCccchhhhhhcCCCCCchHHHHHHHHHHH
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANETLELRDLV-EIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRV 296 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~-Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~Fla~R~ 296 (470)
.+...+|+|||-|++||--.++.+.+. |+-++.- ..++-|++. -..|.| ..|+
T Consensus 71 ~~~~vvivfEGrDAAGKgG~Ikri~~~-lNPR~~rvval~aPt~~-----------------------E~~qwY--~qRy 124 (270)
T COG2326 71 TGQRVVIVFEGRDAAGKGGAIKRITEA-LNPRGARVVALPAPTDR-----------------------ERGQWY--FQRY 124 (270)
T ss_pred cCCeEEEEEecccccCCCchhHHHhhh-cCCceeEEeecCCCChH-----------------------hhccHH--HHHH
Confidence 367789999999999999999999987 7766532 122333211 123433 2455
Q ss_pred HHHHHhcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCC-CCCCcEEEEEeCCHHHHHHHHH
Q 012135 297 MQERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLP-GLIPDGFIYLRASPDTCHKRMM 375 (470)
Q Consensus 297 ~ql~~~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp-~lkPDLvIyLda~pEv~leRI~ 375 (470)
-+. .+..+.++|+|||.|...- +.-+ .|..++.++..+..-...+...|- .-.-=+.+||.++.++.++|..
T Consensus 125 ~~~---lPa~GeiviFdRSwYnr~g--VeRV--mGfct~~q~~rfl~eip~FE~mL~~~Gi~l~Kfwl~Is~eeQ~~RF~ 197 (270)
T COG2326 125 VAH---LPAAGEIVIFDRSWYNRAG--VERV--MGFCTPKQYKRFLREIPEFERMLVESGIILVKFWLSISREEQLERFL 197 (270)
T ss_pred HHh---CCCCCeEEEechhhccccC--eeec--cccCCHHHHHHHHHHhhHHHHHHHhCCeEEEEEEEeCCHHHHHHHHH
Confidence 333 3444789999999997742 2122 466777655333222112221111 0012256899999999999999
Q ss_pred HhccccccC-----C---cHHHHHHHHHHHHhhcCcCC--CCCeEEEEccC
Q 012135 376 LRKRAEEGG-----V---SLDYLRSLHEKHENWLFPFE--SGNHGVLAVSK 416 (470)
Q Consensus 376 kRgR~~E~~-----i---~~eYLe~L~e~Ye~w~~~~~--~~~v~VIDvd~ 416 (470)
.|-...++. + +.+.+..-..+|++-+.+.. ..|..||-+|.
T Consensus 198 ~R~~dP~K~WKlSp~D~~~r~~WddYt~A~~em~~~T~T~~APW~vV~add 248 (270)
T COG2326 198 ERRNDPLKQWKLSPMDLESRDRWDDYTKAKDEMFARTSTPEAPWYVVPADD 248 (270)
T ss_pred HHhcCHHhccCCCHHHHHHHHhHHHHHHHHHHHHhccCCCCCCeEEEeCCc
Confidence 886554441 1 23444455566666655443 35888998883
No 155
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.52 E-value=0.00084 Score=68.41 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++.+|+|.|+.||||||+++.|...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999875
No 156
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.51 E-value=0.00042 Score=69.74 Aligned_cols=62 Identities=23% Similarity=0.209 Sum_probs=36.2
Q ss_pred CCcEEEEEeCCHHHHHHH----HHH-hccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCc
Q 012135 356 IPDGFIYLRASPDTCHKR----MML-RKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPL 419 (470)
Q Consensus 356 kPDLvIyLda~pEv~leR----I~k-RgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~ 419 (470)
..|++|||++++++.++| ..+ ||...|. + .+.+......++.++.+.....-.||+.....+
T Consensus 115 ~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~-v-~~~i~~r~~~~~~~I~P~~~~ADvVI~~~p~~l 181 (273)
T cd02026 115 LLDFSVYLDISDEVKFAWKIQRDMAERGHSLED-V-LASIEARKPDFEAYIDPQKQYADVVIQVLPTQL 181 (273)
T ss_pred hccEEEEEECChhHHHHHHHHHHHHHhCCCHHH-H-HHHHHhhchhHHHHhccccccCcEEEEccCccC
Confidence 469999999999999554 333 4544432 1 122333345666666655544456666664433
No 157
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.50 E-value=9e-05 Score=63.65 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 223 TFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
+|+|.|++||||||+++.|++. ++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~-~~~~ 26 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER-LGFP 26 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH-HTCE
T ss_pred CEEEECCCCCCHHHHHHHHHHH-HCCe
Confidence 5899999999999999999997 6654
No 158
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.49 E-value=0.00081 Score=61.28 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 223 TFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
+|+|.|.+||||||+++.|++. +.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~-l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK-LF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH-HH
Confidence 4789999999999999999997 53
No 159
>PRK07429 phosphoribulokinase; Provisional
Probab=97.45 E-value=0.0009 Score=69.17 Aligned_cols=30 Identities=33% Similarity=0.519 Sum_probs=25.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
.++.+|+|.|..||||||+++.|++. ++..
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~l-l~~~ 35 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADL-LGEE 35 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhH-hccC
Confidence 46789999999999999999999986 6643
No 160
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.42 E-value=0.0013 Score=69.66 Aligned_cols=29 Identities=28% Similarity=0.345 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
-...|+|.|..|||||||++.|+++ ++..
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~-~g~~ 246 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANI-FNTT 246 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH-hCCC
Confidence 4568999999999999999999987 6654
No 161
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.37 E-value=0.0012 Score=71.25 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=26.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
.++.+|+|.|..|+||||++..|++. ++..
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~-lg~~ 282 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYR-LGIT 282 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH-cCCc
Confidence 36899999999999999999999997 7764
No 162
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.35 E-value=0.0024 Score=70.00 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++.+|++.|.+||||||+++.+++.
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~ 392 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQP 392 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999875
No 163
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=97.35 E-value=0.009 Score=69.10 Aligned_cols=32 Identities=19% Similarity=0.395 Sum_probs=28.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
..|++++|+|+|+.||||||+++.|+++ |++.
T Consensus 30 ~~m~~~~i~idG~~gsGKst~~~~la~~-l~~~ 61 (863)
T PRK12269 30 RPMGTVIIALDGPAGSGKSSVCRLLASR-LGAQ 61 (863)
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 4577889999999999999999999998 7764
No 164
>PHA00729 NTP-binding motif containing protein
Probab=97.31 E-value=0.0012 Score=65.24 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=24.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccc
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEE 382 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E 382 (470)
+.+++++++++++.+.+++++||...+
T Consensus 118 R~~l~il~~ls~edL~~~Lr~Rg~~~~ 144 (226)
T PHA00729 118 RVSAVIFTTPSPEDLAFYLREKGWYQI 144 (226)
T ss_pred hCcEEEEecCCHHHHHHHHHhCCCcHH
Confidence 578999999999999999999987543
No 165
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.28 E-value=0.0042 Score=64.70 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=28.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHh
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHEN 399 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~ 399 (470)
.+-.+||+++|+++|++|..+|+.. ++.+-++.+...|+.
T Consensus 154 ~~~~~V~ld~ple~~l~RN~~R~~~----v~devie~m~~r~E~ 193 (340)
T TIGR03575 154 LGFCQLFLDCPVESCLLRNKQRPVP----LPDETIQLMGRKIEK 193 (340)
T ss_pred CCEEEEEEeCCHHHHHHHHhcCCCC----CCHHHHHHHHHHhcC
Confidence 4558999999999999999999743 344445555555543
No 166
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.27 E-value=0.0042 Score=58.19 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 221 RITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+++|+|.|+.||||+|+++.|.+.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhc
Confidence 578999999999999999999986
No 167
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.24 E-value=0.0027 Score=70.80 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=26.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
..++.+|+++|.+||||||+++.|+++ |..
T Consensus 457 ~~~~~~i~~~G~~gsGKst~a~~l~~~-l~~ 486 (632)
T PRK05506 457 GQKPATVWFTGLSGSGKSTIANLVERR-LHA 486 (632)
T ss_pred CCCcEEEEecCCCCchHHHHHHHHHHH-HHH
Confidence 346899999999999999999999997 654
No 168
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=97.21 E-value=0.0059 Score=57.89 Aligned_cols=64 Identities=13% Similarity=0.025 Sum_probs=35.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFY 435 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~ 435 (470)
.|=++|-+.||++++.+|=..||.... +. . ...|+.... . ...-+.||++.. ++++..+.|.+
T Consensus 109 ~~vl~VgV~Cpleil~~RE~~RgDR~~-G~--a-----~~q~~~Vh~-~-~~YDleVDTs~~-------sp~ecA~~I~~ 171 (174)
T PF07931_consen 109 LPVLFVGVRCPLEILERRERARGDRPI-GL--A-----AWQAEHVHE-G-GRYDLEVDTSAT-------SPEECAREILA 171 (174)
T ss_dssp S-EEEEEEE--HHHHHHHHHHHTSSST-TH--H-----HHHTTGGGT-T----SEEEETTSS--------HHHHHHHHHT
T ss_pred CceEEEEEECCHHHHHHHHHhcCCcch-HH--H-----HHHHhhccc-C-CCCCEEEECCCC-------CHHHHHHHHHH
Confidence 456899999999999999999985322 21 0 111111111 1 112367788763 67888888765
Q ss_pred h
Q 012135 436 L 436 (470)
Q Consensus 436 ~ 436 (470)
.
T Consensus 172 ~ 172 (174)
T PF07931_consen 172 R 172 (174)
T ss_dssp T
T ss_pred H
Confidence 4
No 169
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.20 E-value=0.005 Score=63.20 Aligned_cols=30 Identities=30% Similarity=0.473 Sum_probs=26.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
.++++|.|.|+.||||||++..|+++ |+..
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~-l~~~ 119 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASR-LGIR 119 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 36789999999999999999999997 7654
No 170
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.19 E-value=0.015 Score=58.63 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=51.9
Q ss_pred cEEEEEeCC-HHHHHHHHHHhcccccc----CCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHH
Q 012135 358 DGFIYLRAS-PDTCHKRMMLRKRAEEG----GVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDR 432 (470)
Q Consensus 358 DLvIyLda~-pEv~leRI~kRgR~~E~----~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~ 432 (470)
..++||-++ .+....|.-.|.+..-. .--.+|++.++..++-........++.+|+.+. .++.+++
T Consensus 210 ~~~~~l~i~dee~Hr~RF~~R~~~t~~~rp~~Ryl~yf~EiR~I~Dyl~~~Are~gVPvI~n~d---------i~etv~~ 280 (299)
T COG2074 210 VFMFMLYIADEELHRERFYDRIRYTHASRPGGRYLEYFKEIRTIHDYLVERAREHGVPVIENDD---------IDETVDR 280 (299)
T ss_pred eEEEEEEeCCHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHhcCCCeecccc---------HHHHHHH
Confidence 445566555 55556777777543211 112578887777777666666666788888773 4788899
Q ss_pred HHHhhhhhHHhhh
Q 012135 433 VFYLDGPHMHSSI 445 (470)
Q Consensus 433 V~~~I~~~L~~~i 445 (470)
+++.|.+...+..
T Consensus 281 il~~i~~~~~r~~ 293 (299)
T COG2074 281 ILEDIRKRTVRGL 293 (299)
T ss_pred HHHHHHHHHHHHh
Confidence 9998888775433
No 171
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.17 E-value=0.0021 Score=66.22 Aligned_cols=148 Identities=12% Similarity=0.135 Sum_probs=72.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCCCCccchhhhhhcCCCCCchHHHHHHHHHHHHHHH
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQER 300 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~Fla~R~~ql~ 300 (470)
...|+|-|..|+|||||++.|+.. ++... +.|+.- .+.+....+...+...-...++...+....
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~-~~~~~----v~E~~R----------~~~~~~~~~~~~l~~~d~~~i~~g~~~~~~ 226 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAV-FNTTS----AWEYAR----------EYVEEKLGGDEALQYSDYAQIALGQQRYID 226 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh-hCCCE----EeehhH----------HHHHHhcCCCcccCHHHHHHHHHHHHHHHH
Confidence 458999999999999999999986 56542 334311 122222111111111100011111111111
Q ss_pred HhcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHHHHHHhccc
Q 012135 301 ESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRKRA 380 (470)
Q Consensus 301 ~~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~leRI~kRgR~ 380 (470)
........++++|+.++.. .+|+...+ |...+ .+. ..... .+.|+++++....+ ...-..|..+
T Consensus 227 ~~~~~a~~iif~D~~~~~t-~~y~~~~~--~~~~~----~~~----~~~~~---~~ydl~~l~~p~~~--~~~D~~R~~~ 290 (325)
T TIGR01526 227 YAVRHAHKIAFIDTDFITT-QVFAKQYE--GREHP----FLD----SDIAE---YPFDLTLLLKPNTE--WVDDGLRSLG 290 (325)
T ss_pred HHHhhcCCeEEEcCChHHH-HHHHHHHc--CCCCH----HHH----HHHHh---cCCCEEEECCCCCC--CccCCcccCc
Confidence 1111224688999988755 45654332 32221 111 11111 26797777766655 4433345433
Q ss_pred cccCCcHHHHHHHHHHHHhh
Q 012135 381 EEGGVSLDYLRSLHEKHENW 400 (470)
Q Consensus 381 ~E~~i~~eYLe~L~e~Ye~w 400 (470)
.+. ....|.+.+.+.|++.
T Consensus 291 ~~~-~R~~~~~ll~~~l~~~ 309 (325)
T TIGR01526 291 SQK-QRQEFQQLLKKLLDEY 309 (325)
T ss_pred hHH-HHHHHHHHHHHHHHHc
Confidence 321 1235556676777664
No 172
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.09 E-value=0.0012 Score=67.34 Aligned_cols=106 Identities=25% Similarity=0.291 Sum_probs=61.5
Q ss_pred CCCCCeeeccCCCcchHHHHHhhccchHHHHHHHHHHHH---HH----hhHHHHHhhhccccc-ccc---------cchh
Q 012135 131 VGNPDLLTIPGVGPRNLRKLVDNGIGDVAELKQLYKDKF---WE----ASQKMIEYLQSSVGI-IHK---------NHAE 193 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~l~~~~~~-~~~---------~~~~ 193 (470)
..+-+|-.||||||.-.++|.+.||.++.+|.++=.+.. +. ..+++.......+.. ... ....
T Consensus 3 ~~~~~l~~l~gIg~~~a~~L~~~Gi~t~~dl~~~~~~~L~~~~g~~~~~a~~l~~~a~~~~~~~~~~t~~~l~~~~ks~~ 82 (317)
T PRK04301 3 MKEKDLEDLPGVGPATAEKLREAGYDTVEAIAVASPKELSEAAGIGESTAAKIIEAAREAADIGGFETALEVLERRKNVG 82 (317)
T ss_pred cccccHhhcCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHhcCCCHHHHHHHHHHHHHhhccccCccHHHHHHhhccCC
Confidence 345677889999999999999999999999975422222 12 222222222221111 000 0001
Q ss_pred hhhhhhhhhhhhhhccCCCCCCCCCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 194 SITTFIKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 194 ~~~~~i~~~~~~~~~~~~~~~~~~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+.++++..- +.| .-.-.++.++-|.|..||||||++-.++-.
T Consensus 83 ~~~Tg~~~lD-~~l-------~GGi~~g~vtei~G~~GsGKT~l~~~~~~~ 125 (317)
T PRK04301 83 KITTGSKELD-ELL-------GGGIETQSITEFYGEFGSGKTQICHQLAVN 125 (317)
T ss_pred ccCCCCHHHH-HHh-------cCCccCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 1122221111 111 112336889999999999999999999854
No 173
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.04 E-value=0.0014 Score=66.29 Aligned_cols=99 Identities=22% Similarity=0.270 Sum_probs=56.9
Q ss_pred eccCCCcchHHHHHhhccchHHHHHHHHHHHHH---HhhHHHHHhhhccc----ccc----------cccchhhhhhhhh
Q 012135 138 TIPGVGPRNLRKLVDNGIGDVAELKQLYKDKFW---EASQKMIEYLQSSV----GII----------HKNHAESITTFIK 200 (470)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~----~~~----------~~~~~~~~~~~i~ 200 (470)
.||||||.-.++|.+.||.++.+|.++=.+... ..+.+..+.|..-+ +.. .+.....++++++
T Consensus 3 ~i~gig~~~~~~L~~~Gi~ti~dl~~~~~~~L~~~~g~~~~~a~~l~~~~~~~~~~~~~~t~~~~~~~~~s~~~~~Tg~~ 82 (310)
T TIGR02236 3 DLPGVGPATAEKLREAGYDTFEAIAVASPKELSEIAGISEGTAAKIIQAARKAADLGGFETADDVLERRKTIGKITTGSK 82 (310)
T ss_pred ccCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHhccCCCHHHHHHHHHHHHHHhhccCCCCHHHHHHhhccCCeecCCCH
Confidence 589999999999999999999999865333322 11222222221111 110 0000011122211
Q ss_pred hhhhhhhccCCCCCCCCCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 201 DSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..|+.| .-.-..+.++-|.|.+||||||++-.++-.
T Consensus 83 -~lD~~l-------~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~ 118 (310)
T TIGR02236 83 -ELDELL-------GGGIETQAITEVFGEFGSGKTQICHQLAVN 118 (310)
T ss_pred -HHHHHh-------cCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 111111 112235789999999999999999999854
No 174
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=96.91 E-value=0.014 Score=59.46 Aligned_cols=73 Identities=19% Similarity=0.230 Sum_probs=42.2
Q ss_pred cEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhh
Q 012135 358 DGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLD 437 (470)
Q Consensus 358 DLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I 437 (470)
=-+|||+++.+++++|-++-.|...-......++.+... .+++.+.....-.+||++.+ +..+.++.|.+..
T Consensus 83 ~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~E-r~~L~~lr~~Ad~vIDTs~l-------~~~~Lr~~i~~~~ 154 (284)
T PF03668_consen 83 VRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKE-RELLEPLRERADLVIDTSNL-------SVHQLRERIRERF 154 (284)
T ss_pred eEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHH-HHHHHHHHHhCCEEEECCCC-------CHHHHHHHHHHHh
Confidence 367999999999999987633322211111123333222 22333333233489999976 4477777776655
Q ss_pred h
Q 012135 438 G 438 (470)
Q Consensus 438 ~ 438 (470)
.
T Consensus 155 ~ 155 (284)
T PF03668_consen 155 G 155 (284)
T ss_pred c
Confidence 4
No 175
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.88 E-value=0.029 Score=52.34 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++++|+|.|+.||||||+++.|.+.
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~ 25 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQE 25 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999999999999886
No 176
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.86 E-value=0.00085 Score=53.52 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 012135 223 TFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+|+|+|.+||||||+++.|++.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999986
No 177
>COG3911 Predicted ATPase [General function prediction only]
Probab=96.83 E-value=0.011 Score=55.58 Aligned_cols=147 Identities=16% Similarity=0.129 Sum_probs=80.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCCCCccchhhhhh--cCC-CCCc--hHHHHHHHHHH
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYY--DAP-ERYA--YTFQNYVFVTR 295 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY--~dp-~r~a--f~~Ql~Fla~R 295 (470)
-+++.+.|.+|+|||||+..|+.. ++ ..+.|+. ..++..-- .+- -.|. -.|.-.....+
T Consensus 9 ~~~fIltGgpGaGKTtLL~aLa~~--Gf----atvee~~----------r~ii~~es~~gg~~lPW~D~~afael~~~~~ 72 (183)
T COG3911 9 HKRFILTGGPGAGKTTLLAALARA--GF----ATVEEAG----------RDIIALESAQGGTALPWTDPGAFAELVGLQR 72 (183)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHc--Cc----eeeccch----------hhHHHHHHhcCCCcCCccChHHHHHHHHHHH
Confidence 368899999999999999999975 33 2334442 11221110 000 0121 11222334444
Q ss_pred HHHHHHhcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHHHHH
Q 012135 296 VMQERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMM 375 (470)
Q Consensus 296 ~~ql~~~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~leRI~ 375 (470)
..|.... ..+..+++||++... .+.+.+-+|..-..+. .. +.... ..+--|||--|...+++--.
T Consensus 73 l~q~r~~--~~~~~vFfDR~~~da---~a~l~~lsga~la~~v---~~----~~~~~---~Yn~rVfl~qp~~~iyqqde 137 (183)
T COG3911 73 LRQTRSA--AVGGRVFFDRGPPDA---LAYLRFLSGALLADEV---AT----IVREG---RYNPRVFLVQPWPFIYQQDE 137 (183)
T ss_pred HHHhhcc--cccCceeeccCcHHH---HHHHHHhcccHHHHHH---HH----HHHhc---CCCCcEEecCCccccccchh
Confidence 4444322 224578999999853 3333333443211111 11 11111 44556888888888888777
Q ss_pred HhccccccCCcHHHHHHHHHHHHhh
Q 012135 376 LRKRAEEGGVSLDYLRSLHEKHENW 400 (470)
Q Consensus 376 kRgR~~E~~i~~eYLe~L~e~Ye~w 400 (470)
.|....+.. ..+.+.+...|..+
T Consensus 138 ~Rk~tldeA--v~~~e~lv~aYt~L 160 (183)
T COG3911 138 ERKITLDEA--VAFYEVLVAAYTEL 160 (183)
T ss_pred hcccCHHHH--HHHHHHHHHHHHhc
Confidence 776655432 35667777888775
No 178
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=96.81 E-value=0.02 Score=54.44 Aligned_cols=65 Identities=20% Similarity=0.179 Sum_probs=42.6
Q ss_pred EEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhh
Q 012135 359 GFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDG 438 (470)
Q Consensus 359 LvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~ 438 (470)
++|-|.++|+++.+|+..|||+.. .+.+.+|...-..-.. ...+..||-+. ..+...+..+.++.
T Consensus 117 lvv~ita~p~VLaqRL~~RGREs~----eeI~aRL~R~a~~~~~---~~dv~~idNsG--------~l~~ag~~ll~~l~ 181 (192)
T COG3709 117 LVVCITASPEVLAQRLAERGRESR----EEILARLARAARYTAG---PGDVTTIDNSG--------ELEDAGERLLALLH 181 (192)
T ss_pred eeEEEecCHHHHHHHHHHhccCCH----HHHHHHHHhhcccccC---CCCeEEEcCCC--------cHHHHHHHHHHHHH
Confidence 679999999999999999999643 2445555433222111 34677777664 44666666666555
No 179
>PLN02772 guanylate kinase
Probab=96.44 E-value=0.056 Score=57.55 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+.++|+|.|+.|||||||++.|.+.
T Consensus 133 ~~~k~iVlsGPSGvGKsTL~~~L~~~ 158 (398)
T PLN02772 133 NAEKPIVISGPSGVGKGTLISMLMKE 158 (398)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhhh
Confidence 36789999999999999999999875
No 180
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.38 E-value=0.0034 Score=57.94 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
.++.+|+|.|.+||||||+++.|++. +..
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~-l~~ 30 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEK-LRE 30 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH-HHH
Confidence 46789999999999999999999987 543
No 181
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.33 E-value=0.0042 Score=56.57 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=26.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
..+.+|++.|..|+||||+++.|++. ++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~-lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQG-LGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH-cCCC
Confidence 45779999999999999999999996 7643
No 182
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.32 E-value=0.0039 Score=56.08 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
.++.+|++.|..|||||||++.|++. |+..
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~-lg~~ 42 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARA-LGID 42 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHH-TT--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH-cCCC
Confidence 46789999999999999999999986 7654
No 183
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.30 E-value=0.012 Score=60.56 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=35.4
Q ss_pred hhhhhhhhhhhhhccCCCCCCCCCCCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 195 ITTFIKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 195 ~~~~i~~~~~~~~~~~~~~~~~~~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
+...+.+.+.+.+......-.....++.+|+|.|+.|+||||++..|+.. +...
T Consensus 88 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~-l~~~ 141 (318)
T PRK10416 88 LKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHK-YKAQ 141 (318)
T ss_pred HHHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHH-HHhc
Confidence 44556666655553221111113346889999999999999999999986 5433
No 184
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.21 E-value=0.0045 Score=51.68 Aligned_cols=28 Identities=29% Similarity=0.300 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
+..|.|.|+.|+||||+++.|+.. +...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~-~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARE-LGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhc-cCCC
Confidence 567899999999999999999987 5544
No 185
>COG4639 Predicted kinase [General function prediction only]
Probab=96.16 E-value=0.022 Score=53.62 Aligned_cols=41 Identities=15% Similarity=0.041 Sum_probs=28.2
Q ss_pred ChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHHHHHHhccc
Q 012135 334 NEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRKRA 380 (470)
Q Consensus 334 s~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~leRI~kRgR~ 380 (470)
..++...|.++...+. .-+.+|++|+|++.|++|.+.|.|.
T Consensus 80 rr~~r~~l~~La~~y~------~~~~~ivfdtp~~~c~aRNk~~~Rq 120 (168)
T COG4639 80 RREDRRKLIDLAKAYG------YKIYAIVFDTPLELCLARNKLRERQ 120 (168)
T ss_pred CHHHHHHHHHHHHHhC------CeEEEEEEeCCHHHHHHHhhccchh
Confidence 3455556655543332 3357799999999999999866654
No 186
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=96.13 E-value=0.014 Score=56.99 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
.+++++|.+||||||+++.+.+ ++..
T Consensus 2 ~iVGLTGgiatGKStVs~~f~~--~G~~ 27 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFKA--LGIP 27 (225)
T ss_pred eEEEeecccccChHHHHHHHHH--cCCc
Confidence 3679999999999999999996 4543
No 187
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=96.12 E-value=0.017 Score=54.28 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q 012135 223 TFCVEGNISVGKTTFLQRIANETLELRD 250 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~~L~~~~ 250 (470)
+|+|.+-.|||++|+++.||+. |+...
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~-Lg~~~ 27 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEK-LGYPY 27 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHH-CT--E
T ss_pred CEEECCCCCCChHHHHHHHHHH-cCCcc
Confidence 6999999999999999999998 88654
No 188
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.06 E-value=0.018 Score=58.06 Aligned_cols=54 Identities=26% Similarity=0.345 Sum_probs=34.8
Q ss_pred hhhhhhhhhhhhhccCCCCCCCCCCCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 195 ITTFIKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 195 ~~~~i~~~~~~~~~~~~~~~~~~~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
+.+.+.+...+.+...+........++.+|+|.|+.|+||||.+..|+.. +...
T Consensus 46 ~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~-l~~~ 99 (272)
T TIGR00064 46 LKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANK-LKKQ 99 (272)
T ss_pred HHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHH-HHhc
Confidence 34556666655543321111123456789999999999999999999976 5433
No 189
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.94 E-value=0.0073 Score=51.75 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 224 FCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 224 IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
|.|.|+.|+||||+++.|++. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~-l~~ 24 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY-LGF 24 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH-TTS
T ss_pred CEEECcCCCCeeHHHHHHHhh-ccc
Confidence 679999999999999999997 664
No 190
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=95.92 E-value=0.074 Score=50.22 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=28.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCc
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANETLELRDL 251 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~ 251 (470)
+.++++|=|.|..||||||++=.|.+. |-.++.
T Consensus 28 ~qkGcviWiTGLSgSGKStlACaL~q~-L~qrgk 60 (207)
T KOG0635|consen 28 KQKGCVIWITGLSGSGKSTLACALSQA-LLQRGK 60 (207)
T ss_pred cCCCcEEEEeccCCCCchhHHHHHHHH-HHhcCc
Confidence 468999999999999999999999997 554553
No 191
>COG0645 Predicted kinase [General function prediction only]
Probab=95.81 E-value=0.12 Score=49.18 Aligned_cols=27 Identities=26% Similarity=0.198 Sum_probs=24.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
.++.+.|..|+||||+++.|++. +++.
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~-lgA~ 28 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAEL-LGAI 28 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhh-cCce
Confidence 57899999999999999999997 7764
No 192
>PTZ00035 Rad51 protein; Provisional
Probab=95.81 E-value=0.018 Score=59.79 Aligned_cols=103 Identities=20% Similarity=0.252 Sum_probs=56.5
Q ss_pred CCeeeccCCCcchHHHHHhhccchHHHHHHHHHHHHHH-------hhHHHHHhhhcc--ccccc-------ccchhhhhh
Q 012135 134 PDLLTIPGVGPRNLRKLVDNGIGDVAELKQLYKDKFWE-------ASQKMIEYLQSS--VGIIH-------KNHAESITT 197 (470)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~--~~~~~-------~~~~~~~~~ 197 (470)
.|-|.-|||||.-..||.++||.++.+|-.+=+...-+ .-++++...+.- .++.. +.....|++
T Consensus 23 ~~~l~~~g~~~~~~~kL~~~g~~t~~~~~~~~~~~L~~~~gis~~~~~~i~~~~~~~~~~~~~ta~~~~~~~~~~~~isT 102 (337)
T PTZ00035 23 IEKLQSAGINAADIKKLKEAGICTVESVAYATKKDLCNIKGISEAKVEKIKEAASKLVPMGFISATEYLEARKNIIRITT 102 (337)
T ss_pred HHHHhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCCCHHHHHHHHHHHHHhcccCCCCHHHHHHhhccCccccC
Confidence 34455699999999999999999998876332222211 111222111111 12210 111111111
Q ss_pred hhhhhhhhhhccCCCCCCCCCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 198 FIKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 198 ~i~~~~~~~~~~~~~~~~~~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-++ ..|+.| .-.-..+.++.|.|..||||||++..|+-.
T Consensus 103 G~~-~LD~lL-------gGGi~~G~iteI~G~~GsGKT~l~~~l~~~ 141 (337)
T PTZ00035 103 GST-QLDKLL-------GGGIETGSITELFGEFRTGKTQLCHTLCVT 141 (337)
T ss_pred CcH-HHHHHh-------CCCCCCCeEEEEECCCCCchhHHHHHHHHH
Confidence 111 111111 112346889999999999999999988753
No 193
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.78 E-value=0.038 Score=55.78 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++.+|+|.|+.||||||++..|+.+
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999986
No 194
>smart00483 POLXc DNA polymerase X family. includes vertebrate polymerase beta and terminal deoxynucleotidyltransferases
Probab=95.69 E-value=0.0072 Score=62.67 Aligned_cols=94 Identities=21% Similarity=0.276 Sum_probs=65.8
Q ss_pred CCCCCCeeeccCCCcchHHHHHhhccchHHHHHHHHHHHHHHhhH-HHHHhhhcccccccccchhhhhhhhhhhhhhhhc
Q 012135 130 LVGNPDLLTIPGVGPRNLRKLVDNGIGDVAELKQLYKDKFWEASQ-KMIEYLQSSVGIIHKNHAESITTFIKDSVDEELK 208 (470)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 208 (470)
+.+--+|+.||||||+-.++|.+.|+.+++||+++.+++ .+..+ .=+.++...-.=+.+..|.+|+..|.+.....
T Consensus 85 p~~l~~l~~i~GiGpk~a~~l~~lGi~tl~eL~~a~~~~-l~~~q~~gl~~~~~~~~ri~r~e~~~i~~~i~~~l~~~-- 161 (334)
T smart00483 85 YKSLKLFTNVFGVGPKTAAKWYRKGIRTLEELKKNKELK-LTKQQKAGLKYYEDILKKVSRAEAFAVEYIVKRAVRKI-- 161 (334)
T ss_pred HHHHHHHHccCCcCHHHHHHHHHhCCCCHHHHHhccccc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh--
Confidence 356678999999999999999999999999999887764 32222 11344443334467888888877777666332
Q ss_pred cCCCCCCCCCCCCcEEEEEcCCCCcHHH
Q 012135 209 DSNSDDKPAPKKRITFCVEGNISVGKTT 236 (470)
Q Consensus 209 ~~~~~~~~~~~K~~~IvIEG~dGSGKST 236 (470)
+ ....+.+.|..-=||.|
T Consensus 162 --~--------~~~~v~i~GSyRRgket 179 (334)
T smart00483 162 --L--------PDAIVTLTGSFRRGKET 179 (334)
T ss_pred --C--------CCcEEEEecccccCCCc
Confidence 1 23467778877777655
No 195
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.69 E-value=0.026 Score=59.67 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++.+|+|-|+.|+||||++..|+..
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999999976
No 196
>PRK10646 ADP-binding protein; Provisional
Probab=95.63 E-value=0.014 Score=54.49 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=26.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
..+.+|++.|.-|||||||++.|++. |+..
T Consensus 26 ~~g~vi~L~GdLGaGKTtf~rgl~~~-Lg~~ 55 (153)
T PRK10646 26 DGATVIYLYGDLGAGKTTFSRGFLQA-LGHQ 55 (153)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-cCCC
Confidence 34678999999999999999999996 7754
No 197
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.59 E-value=0.0097 Score=65.29 Aligned_cols=50 Identities=22% Similarity=0.440 Sum_probs=38.3
Q ss_pred ccccchhhhhhhhhhhhhhhhccCCCCCCCCCCCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 187 IHKNHAESITTFIKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 187 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
+|+.-.+.|-.++.+.... ..+..++.+.|+.||||||.++.|+++ ++..
T Consensus 23 vhkkKv~eV~~wl~~~~~~------------~~~~~iLlLtGP~G~GKtttv~~La~e-lg~~ 72 (519)
T PF03215_consen 23 VHKKKVEEVRSWLEEMFSG------------SSPKRILLLTGPSGCGKTTTVKVLAKE-LGFE 72 (519)
T ss_pred ccHHHHHHHHHHHHHHhcc------------CCCcceEEEECCCCCCHHHHHHHHHHH-hCCe
Confidence 6888888887777654411 123448899999999999999999998 7764
No 198
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.52 E-value=0.0096 Score=53.62 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 012135 223 TFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+|+|.|+.||||||+++.|++.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999986
No 199
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.46 E-value=0.014 Score=55.30 Aligned_cols=31 Identities=32% Similarity=0.514 Sum_probs=26.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELRD 250 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~ 250 (470)
...|-|+|+|.+|+||||+++.+++. |...+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~-L~~~g 33 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEK-LREKG 33 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHH-HHhcC
Confidence 35688999999999999999999987 66554
No 200
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.44 E-value=0.031 Score=58.43 Aligned_cols=97 Identities=29% Similarity=0.353 Sum_probs=56.8
Q ss_pred CCeeeccCCCcchHHHHHhhccchHHHHH-----HHHH---------HHHHHhhHHHHHhhhccccccc-------ccch
Q 012135 134 PDLLTIPGVGPRNLRKLVDNGIGDVAELK-----QLYK---------DKFWEASQKMIEYLQSSVGIIH-------KNHA 192 (470)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---------~~~~~~~~~~~~~l~~~~~~~~-------~~~~ 192 (470)
.|-|.-+||||.-..||.+.||.++.+|- +|.+ +|..+...++++ .||.. |...
T Consensus 31 ~~~l~~~g~~~~~~~kL~~~g~~tv~~~~~~~~~~L~~~~g~s~~~~~ki~~~a~~~~~-----~~~~ta~~~~~~~~~~ 105 (344)
T PLN03187 31 IDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKLLN-----QGFITGSDALLKRKSV 105 (344)
T ss_pred HHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHHHhhc-----ccCCcHHHHHhhhccC
Confidence 34456689999999999999999998874 4443 222222222221 12211 1111
Q ss_pred hhhhhhhhhhhhhhhccCCCCCCCCCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 193 ESITTFIKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 193 ~~~~~~i~~~~~~~~~~~~~~~~~~~~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
..|++-++. .|+-| .-.-..+.++-|.|..|||||+|+-.|+-
T Consensus 106 ~~isTG~~~-LD~lL-------gGGi~~G~ItEI~G~~GsGKTql~lqlav 148 (344)
T PLN03187 106 VRITTGSQA-LDELL-------GGGIETRCITEAFGEFRSGKTQLAHTLCV 148 (344)
T ss_pred ceecCCcHh-HHhhc-------CCCCCCCeEEEEecCCCCChhHHHHHHHH
Confidence 122222211 11111 11233678889999999999999998863
No 201
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.43 E-value=0.026 Score=53.09 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+..|+|.|+.||||||+++.|...
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45678999999999999999999975
No 202
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases. X family polymerases fill in short gaps during DNA repair. They are relatively inaccurate enzymes and play roles in base excision repair, in non-homologous end joining (NHEJ) which acts mainly to repair damage due to ionizing radiation, and in V(D)J recombination. This family includes eukaryotic Pol beta, Pol lambda, Pol mu, and terminal deoxyribonucleotidyl transferase (TdT). Pol beta and Pol lambda are primarily DNA template-dependent polymerases. TdT is a DNA template-independent polymerase. Pol mu has both template dependent and template independent activities. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These three carboxylate residues are fairly well conserved in this
Probab=95.41 E-value=0.013 Score=59.95 Aligned_cols=74 Identities=30% Similarity=0.433 Sum_probs=54.3
Q ss_pred CCCCCeeeccCCCcchHHHHHhhccchHHHHHHHHHHHHHHhhHHHHHhhhcccccccccchhhhhhhhhhhhh
Q 012135 131 VGNPDLLTIPGVGPRNLRKLVDNGIGDVAELKQLYKDKFWEASQKMIEYLQSSVGIIHKNHAESITTFIKDSVD 204 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 204 (470)
.+--+|+.||||||+-.++|.+.|+.+++||+.+--.|.-..-..=+.++...-+=+.+..|.+|+..|.+...
T Consensus 82 ~~l~~l~~i~GiGpk~a~~l~~lGi~sl~dL~~a~g~k~~~~i~~gl~~~~~~~~ri~r~ea~~~a~~i~~~l~ 155 (307)
T cd00141 82 PGLLLLLRVPGVGPKTARKLYELGIRTLEDLRKAAGAKLEQNILIGLEYYEDFQQRIPREEALAIAEIIKEALR 155 (307)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHcCCCCHHHHHHHhccccHHHHHHHHHHHHHhcCCeEHHHHHHHHHHHHHHHH
Confidence 45568999999999999999999999999999876333322222224444444455789999998888877763
No 203
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=95.40 E-value=0.22 Score=50.57 Aligned_cols=73 Identities=19% Similarity=0.181 Sum_probs=44.0
Q ss_pred EEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhh
Q 012135 359 GFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDG 438 (470)
Q Consensus 359 LvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~ 438 (470)
-++||+++-+++++|.+.-.|...-....--++.+ +.-.+++.+-+...-.|||++.+ ++.+.++.|...+.
T Consensus 85 ~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I-~~ERelL~pLk~~A~~vIDTs~l-------s~~~Lr~~i~~~f~ 156 (286)
T COG1660 85 RVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAI-AKERELLAPLREIADLVIDTSEL-------SVHELRERIRTRFL 156 (286)
T ss_pred eEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHH-HHHHHHHHHHHHHhhhEeecccC-------CHHHHHHHHHHHHc
Confidence 45999999999999987533322111111123333 33344555555444589999975 55777777766655
Q ss_pred h
Q 012135 439 P 439 (470)
Q Consensus 439 ~ 439 (470)
.
T Consensus 157 ~ 157 (286)
T COG1660 157 G 157 (286)
T ss_pred c
Confidence 4
No 204
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.24 E-value=0.015 Score=50.88 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|.|..|||||||++.|+..
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEEccCCCccccceeeeccc
Confidence 36789999999999999999999874
No 205
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.18 E-value=0.016 Score=55.69 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
.+.+|-+|+|.|+.|||||||.|.++.
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHh
Confidence 456889999999999999999999996
No 206
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.12 E-value=0.025 Score=53.07 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
|+|.|.|+.||||||++..|++. ++.
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~-~~~ 27 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQ-SGL 27 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHH-cCC
Confidence 67999999999999999999986 443
No 207
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=95.11 E-value=0.0065 Score=47.37 Aligned_cols=30 Identities=43% Similarity=0.861 Sum_probs=26.9
Q ss_pred CeeeccCCCcchHHHHHhhccchHHHHHHH
Q 012135 135 DLLTIPGVGPRNLRKLVDNGIGDVAELKQL 164 (470)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (470)
+|+.||||||+..++|.+.||.++++|-.+
T Consensus 6 ~L~~I~Gig~~~a~~L~~~G~~t~~~l~~a 35 (60)
T PF14520_consen 6 DLLSIPGIGPKRAEKLYEAGIKTLEDLANA 35 (60)
T ss_dssp HHHTSTTCHHHHHHHHHHTTCSSHHHHHTS
T ss_pred hhccCCCCCHHHHHHHHhcCCCcHHHHHcC
Confidence 688999999999999999999998887643
No 208
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=95.11 E-value=0.022 Score=52.97 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=26.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
..+.+|++.|.-|||||||+|.|++. |+..
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~-Lg~~ 52 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKG-LGVD 52 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHH-cCCC
Confidence 57889999999999999999999986 7753
No 209
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.10 E-value=0.057 Score=58.87 Aligned_cols=49 Identities=20% Similarity=0.322 Sum_probs=34.1
Q ss_pred hhhhhhhhhhhhhccCCCCCCCCCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 195 ITTFIKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 195 ~~~~i~~~~~~~~~~~~~~~~~~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+-.++.+.+.+.++..+.. .....++.+|+|-|+.|+||||.+..|+..
T Consensus 231 ~~~~l~~~l~~~l~~~~~~-~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 231 ALDWVQSALAKNLPVLDSE-DALLDRGGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred HHHHHHHHHHHHHhhccCc-cccccCCcEEEEECCCCccHHHHHHHHHHH
Confidence 3455666665555443321 112345789999999999999999999976
No 210
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.06 E-value=0.054 Score=58.21 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++.+|+|.|+.||||||++..|+.+
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999975
No 211
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=95.02 E-value=0.076 Score=50.44 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=25.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCCCceE
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELRDLVE 253 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~E 253 (470)
++++|-|+-.||||||++.|+.. ++....+|
T Consensus 9 K~VailG~ESsGKStLv~kLA~~-fnt~~~wE 39 (187)
T COG3172 9 KTVAILGGESSGKSTLVNKLANI-FNTTSAWE 39 (187)
T ss_pred eeeeeecCcccChHHHHHHHHHH-hCCCchhH
Confidence 57899999999999999999986 77644333
No 212
>PRK14974 cell division protein FtsY; Provisional
Probab=95.01 E-value=0.056 Score=56.30 Aligned_cols=31 Identities=26% Similarity=0.295 Sum_probs=25.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
..++.+|+|.|+.|+||||++..|+.. +...
T Consensus 137 ~~~~~vi~~~G~~GvGKTTtiakLA~~-l~~~ 167 (336)
T PRK14974 137 KGKPVVIVFVGVNGTGKTTTIAKLAYY-LKKN 167 (336)
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH-HHHc
Confidence 346789999999999999999999876 5433
No 213
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.01 E-value=0.02 Score=54.18 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999999964
No 214
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.01 E-value=0.021 Score=56.51 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=24.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
...+|-+++|-|+.|||||||+..|+-
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 356889999999999999999999985
No 215
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.00 E-value=0.02 Score=54.44 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|+.|||||||++.|+..
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999864
No 216
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.94 E-value=0.023 Score=59.72 Aligned_cols=29 Identities=17% Similarity=0.384 Sum_probs=25.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
.+++++.|.|++|+||||+++.|++. ++.
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~-l~~ 104 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRG-LEE 104 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-Hhh
Confidence 35688999999999999999999987 654
No 217
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.93 E-value=0.022 Score=54.26 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999963
No 218
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.92 E-value=0.023 Score=53.96 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999999999864
No 219
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=94.90 E-value=0.023 Score=49.45 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
....|++-|..||||||+++.|...
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999753
No 220
>PF13173 AAA_14: AAA domain
Probab=94.90 E-value=0.027 Score=49.61 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++++++|.|+-|+||||+++.+++.
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~ 25 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKD 25 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999986
No 221
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.90 E-value=0.023 Score=53.81 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999963
No 222
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.90 E-value=0.024 Score=53.02 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999999999863
No 223
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.88 E-value=0.025 Score=52.59 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999999999864
No 224
>PLN02840 tRNA dimethylallyltransferase
Probab=94.86 E-value=0.033 Score=59.65 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=27.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
...++++|+|.|+.||||||++..|+++ ++.
T Consensus 17 ~~~~~~vi~I~GptgsGKTtla~~La~~-~~~ 47 (421)
T PLN02840 17 KTKKEKVIVISGPTGAGKSRLALELAKR-LNG 47 (421)
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHH-CCC
Confidence 4456789999999999999999999997 664
No 225
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.84 E-value=0.024 Score=53.70 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999999864
No 226
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.83 E-value=0.024 Score=54.05 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|+.|||||||++.|+..
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999864
No 227
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.83 E-value=0.024 Score=54.33 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 357899999999999999999999974
No 228
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.82 E-value=0.025 Score=53.29 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 347889999999999999999999964
No 229
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.78 E-value=0.025 Score=54.06 Aligned_cols=27 Identities=30% Similarity=0.292 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+|-+++|.|..|||||||++.|+..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 28 IKKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999999964
No 230
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.78 E-value=0.025 Score=53.67 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999864
No 231
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.74 E-value=0.025 Score=53.77 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-+++|.|..|||||||++.|+..
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 357889999999999999999999863
No 232
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.74 E-value=0.025 Score=53.91 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-+++|.|..|||||||++.|+..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999863
No 233
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.73 E-value=0.026 Score=53.34 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|+.|||||||++.|+..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999999863
No 234
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.73 E-value=0.037 Score=56.94 Aligned_cols=26 Identities=19% Similarity=0.186 Sum_probs=22.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
...+.++.|.|..|+||||++..|+.
T Consensus 93 i~~g~i~~i~G~~g~GKT~l~~~~~~ 118 (316)
T TIGR02239 93 IETGSITEIFGEFRTGKTQLCHTLAV 118 (316)
T ss_pred CCCCeEEEEECCCCCCcCHHHHHHHH
Confidence 34688999999999999999998875
No 235
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.73 E-value=0.026 Score=54.61 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-+++|.|+.|||||||++.|+..
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999863
No 236
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.72 E-value=0.028 Score=53.20 Aligned_cols=27 Identities=30% Similarity=0.270 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999863
No 237
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.71 E-value=0.024 Score=54.57 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-+++|-|..|||||||++.|+..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 357889999999999999999999864
No 238
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.70 E-value=0.027 Score=53.35 Aligned_cols=27 Identities=30% Similarity=0.192 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999964
No 239
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.67 E-value=0.044 Score=56.88 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCceEeccCC
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEP 258 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~EP 258 (470)
.+..|.|.|..||||||+++.|... +.....+..+.++
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~-ip~~~ri~tiEd~ 196 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALRE-IPAIERLITVEDA 196 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhh-CCCCCeEEEecCC
Confidence 4567999999999999999999986 5543333334443
No 240
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.67 E-value=0.037 Score=52.53 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=25.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELRD 250 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~ 250 (470)
++..+|+|.|..|||||||++.|... |..++
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~-l~~~g 34 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA-LCARG 34 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH-HhhcC
Confidence 45568999999999999999999986 65544
No 241
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.67 E-value=0.028 Score=53.77 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-+++|.|..|||||||++.|+..
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 347889999999999999999999864
No 242
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.67 E-value=0.029 Score=51.91 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|.|..|||||||++.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 47889999999999999999999864
No 243
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.67 E-value=0.028 Score=54.27 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999964
No 244
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.66 E-value=0.029 Score=53.46 Aligned_cols=27 Identities=33% Similarity=0.351 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-+++|.|..|||||||++.|+..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999963
No 245
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.65 E-value=0.028 Score=54.28 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-+++|.|..|||||||++.|+..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999863
No 246
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.65 E-value=0.029 Score=53.12 Aligned_cols=26 Identities=31% Similarity=0.268 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|.|..|||||||++.|+..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 47889999999999999999999863
No 247
>PLN02796 D-glycerate 3-kinase
Probab=94.64 E-value=0.031 Score=58.52 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=25.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
.++.+|+|.|..||||||+++.|... +..
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~l-L~~ 126 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYL-FNA 126 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH-hcc
Confidence 36789999999999999999999986 543
No 248
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.63 E-value=0.032 Score=51.61 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 357889999999999999999999964
No 249
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.61 E-value=0.029 Score=53.98 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-+++|.|..|||||||++.|+..
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999964
No 250
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.58 E-value=0.038 Score=46.79 Aligned_cols=25 Identities=36% Similarity=0.405 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+..+.|.|+.|+||||+++.+++.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999986
No 251
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.57 E-value=0.031 Score=53.46 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-+++|.|..|||||||++.|+..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 347889999999999999999999964
No 252
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.57 E-value=0.03 Score=54.07 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||++.|+..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999964
No 253
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.55 E-value=0.032 Score=51.76 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 357889999999999999999999863
No 254
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.55 E-value=0.045 Score=54.06 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCC-CceEeccCCc
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELR-DLVEIVPEPI 259 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~-~~~Evv~EPv 259 (470)
.+..|.|.|..||||||+++.|.++ +... ..+..+.+|.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~-i~~~~~~iv~iEd~~ 165 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEE-IPPEDERIVTIEDPP 165 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH-CHTTTSEEEEEESSS
T ss_pred cceEEEEECCCccccchHHHHHhhh-ccccccceEEecccc
Confidence 4678999999999999999999987 5544 3333455543
No 255
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=94.55 E-value=0.83 Score=49.98 Aligned_cols=76 Identities=22% Similarity=0.226 Sum_probs=48.7
Q ss_pred HHHHHHHhhHHHHHhhhcccccccccchhhhhhhhhhhhhhhhcc--CCCCCCCCCCCCcEEEEEcCCCCcHHHHHHHHH
Q 012135 165 YKDKFWEASQKMIEYLQSSVGIIHKNHAESITTFIKDSVDEELKD--SNSDDKPAPKKRITFCVEGNISVGKTTFLQRIA 242 (470)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~K~~~IvIEG~dGSGKSTLaKlLA 242 (470)
|-|+.|+++++.-+.-.+.-|+|.... .|+..+.-+.|-+ .| .++-.....+|+=-..+|+||||.++.|.
T Consensus 323 f~~~~~~~~~~~~~~ym~~~gii~lr~-----~fl~ls~ldlmhl~~~n--d~d~~~e~tll~pia~igcgktt~ak~l~ 395 (758)
T COG5324 323 FCDKKFKEDEDAKRLYMSNKGIISLRD-----EFLVLSKLDLMHLSVSN--DNDCGKEFTLLVPIATIGCGKTTVAKILE 395 (758)
T ss_pred hhhhhhccCHHHHHHhhccCCeEEehh-----hhhhhcccceEEEEecc--CccccceeEEEEEEEEeccCcccHHHHHH
Confidence 567888888888777777777765543 3333333222211 22 12223344577778899999999999999
Q ss_pred HhhhcC
Q 012135 243 NETLEL 248 (470)
Q Consensus 243 k~~L~~ 248 (470)
+. +++
T Consensus 396 ~l-f~w 400 (758)
T COG5324 396 KL-FGW 400 (758)
T ss_pred HH-cCC
Confidence 85 554
No 256
>PLN02165 adenylate isopentenyltransferase
Probab=94.54 E-value=0.035 Score=57.83 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=26.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
..++.+|+|-|+.||||||++..|++. ++.
T Consensus 40 ~~~g~iivIiGPTGSGKStLA~~LA~~-l~~ 69 (334)
T PLN02165 40 NCKDKVVVIMGATGSGKSRLSVDLATR-FPS 69 (334)
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHHHH-cCC
Confidence 456789999999999999999999997 653
No 257
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.53 E-value=0.031 Score=53.15 Aligned_cols=26 Identities=31% Similarity=0.211 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|.|..|||||||++.|+..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999999863
No 258
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.53 E-value=0.032 Score=48.10 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=19.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..+++|.|..|+||||+++.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999987
No 259
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.51 E-value=0.034 Score=51.29 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999999999864
No 260
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.51 E-value=0.032 Score=52.59 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
..++-+++|.|..|||||||++.|+.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 35788999999999999999999985
No 261
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.51 E-value=0.031 Score=54.17 Aligned_cols=27 Identities=30% Similarity=0.235 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|+.|||||||++.|+..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 25 IPSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999999999964
No 262
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=94.48 E-value=0.035 Score=57.13 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=25.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
+++++|+|.|+.||||||++..|+++ ++.
T Consensus 2 ~~~~~i~i~GptgsGKt~la~~la~~-~~~ 30 (307)
T PRK00091 2 MKPKVIVIVGPTASGKTALAIELAKR-LNG 30 (307)
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHh-CCC
Confidence 35679999999999999999999997 553
No 263
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.48 E-value=0.033 Score=53.45 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 33 VKRGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 357899999999999999999999964
No 264
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.48 E-value=0.043 Score=48.42 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=21.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 224 FCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 224 IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
|.+.|..|+|||++++.|++. ++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~-~~~~ 26 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL-LGRP 26 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH-HTCE
T ss_pred EEEECCCCCCHHHHHHHHHHH-hhcc
Confidence 679999999999999999997 6543
No 265
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.47 E-value=0.033 Score=53.90 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999964
No 266
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.46 E-value=0.031 Score=53.01 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++ +++|-|..|||||||++.|+..
T Consensus 24 ~~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 24 GPG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cCC-cEEEECCCCCCHHHHHHHHhCC
Confidence 347 8999999999999999999863
No 267
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.46 E-value=0.033 Score=53.50 Aligned_cols=27 Identities=37% Similarity=0.454 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-+++|.|..|||||||++.|+..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999964
No 268
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.45 E-value=0.036 Score=51.59 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999864
No 269
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.45 E-value=0.03 Score=55.38 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=24.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
...+|-+++|.|+.|||||||++.|..
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 467899999999999999999999974
No 270
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.44 E-value=0.034 Score=53.46 Aligned_cols=27 Identities=26% Similarity=0.150 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||++.|+..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 347889999999999999999999964
No 271
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.43 E-value=0.034 Score=53.95 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-+++|.|..|||||||++.|+..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999964
No 272
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.42 E-value=0.036 Score=53.46 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
...++-+++|.|+.|||||||++.|+..
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 29 SLRAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3457889999999999999999999863
No 273
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.42 E-value=0.034 Score=53.69 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999999999963
No 274
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.42 E-value=0.035 Score=53.43 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 24 IPAGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 357899999999999999999999964
No 275
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=94.40 E-value=0.035 Score=54.25 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||++.|+..
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 357889999999999999999999963
No 276
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.39 E-value=0.035 Score=53.23 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 26 i~~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999999964
No 277
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=94.38 E-value=0.034 Score=53.67 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|.|..|||||||++.|+..
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 47889999999999999999999974
No 278
>PF05729 NACHT: NACHT domain
Probab=94.38 E-value=0.038 Score=48.98 Aligned_cols=22 Identities=27% Similarity=0.610 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 012135 223 TFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+++|.|..|+||||+++.++..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 6899999999999999999986
No 279
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=94.35 E-value=0.026 Score=61.44 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=29.0
Q ss_pred hhhhhhhhhhccCCCCCCCCCCCCcEEEEEcCCCCcHHHHHH
Q 012135 198 FIKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQ 239 (470)
Q Consensus 198 ~i~~~~~~~~~~~~~~~~~~~~K~~~IvIEG~dGSGKSTLaK 239 (470)
+|++.|..++..+=.+..-...+|-+|+|.|+.||||||+++
T Consensus 9 hi~r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 9 YVKRKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred eechHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 466666554433211112245688999999999999999999
No 280
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.35 E-value=0.039 Score=52.21 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|-|..|||||||++.|+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcC
Confidence 57889999999999999999999964
No 281
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.35 E-value=0.056 Score=56.46 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
..+..|.|.|+.||||||+++.|... +..
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~-i~~ 188 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISA-IPP 188 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcc-cCC
Confidence 45678999999999999999999986 443
No 282
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.78 Score=51.69 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
.++=|-+.|++|+||||+++.||.+ -+..
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne-~~~n 495 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANE-AGMN 495 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhh-hcCC
Confidence 3456789999999999999999997 4544
No 283
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.031 Score=58.20 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
..+|-+-|++|+|||||||.|+++ |..
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQk-LSI 203 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQK-LSI 203 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHh-hee
Confidence 579999999999999999999997 653
No 284
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.33 E-value=0.038 Score=53.91 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-+++|.|..|||||||++.|+..
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 26 IPDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 357889999999999999999999964
No 285
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.32 E-value=0.037 Score=53.88 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+|-+++|.|..|||||||++.|+..
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 26 VKPGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999999964
No 286
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.32 E-value=0.13 Score=54.73 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++.+|++-|+.|+||||.+..|+.+
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~ 197 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAI 197 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45779999999999999999999976
No 287
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=94.32 E-value=0.038 Score=53.59 Aligned_cols=27 Identities=19% Similarity=0.094 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+|-+++|.|..|||||||++.|+..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999964
No 288
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.31 E-value=0.037 Score=55.40 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
...+|-|++|-|+.|||||||.++++-
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 356889999999999999999999996
No 289
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.30 E-value=0.04 Score=52.55 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-+++|.|..|||||||++.|+..
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 27 IKPGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 357889999999999999999999864
No 290
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.30 E-value=0.055 Score=51.58 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 012135 223 TFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+|.|.|+.||||||++..|...
T Consensus 3 lilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988876
No 291
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.29 E-value=0.04 Score=52.44 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999863
No 292
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.29 E-value=0.12 Score=55.56 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++.+|+|-|+.|+||||++..|+..
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999875
No 293
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.28 E-value=0.038 Score=51.49 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999999999964
No 294
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=94.27 E-value=0.038 Score=54.31 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+|-+++|.|..|||||||++.|+..
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 29 LYPGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999999974
No 295
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=94.27 E-value=0.038 Score=54.00 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 26 LYPGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 347899999999999999999999964
No 296
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.26 E-value=0.038 Score=53.79 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||++.|+..
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999964
No 297
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.26 E-value=0.039 Score=53.29 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999999964
No 298
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.26 E-value=0.039 Score=52.16 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=22.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHH
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIA 242 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLA 242 (470)
..++-+++|.|+.|||||||++.+.
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4578899999999999999999885
No 299
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.25 E-value=0.041 Score=52.17 Aligned_cols=27 Identities=26% Similarity=0.212 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-+++|-|..|||||||++.|+..
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999864
No 300
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.23 E-value=0.042 Score=52.12 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999999999964
No 301
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.22 E-value=0.04 Score=52.47 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|+.|||||||++.|+..
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999999864
No 302
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.22 E-value=0.041 Score=51.79 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|-|..|||||||++.|+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999864
No 303
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.22 E-value=0.043 Score=51.86 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||++.|+..
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999999863
No 304
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.21 E-value=0.043 Score=50.52 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999999999864
No 305
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=94.20 E-value=0.04 Score=53.35 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999964
No 306
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.18 E-value=0.033 Score=50.79 Aligned_cols=25 Identities=40% Similarity=0.518 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 224 FCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 224 IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
|.+||.+|+||||+++.|++. ++..
T Consensus 2 vLleg~PG~GKT~la~~lA~~-~~~~ 26 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS-LGLS 26 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH-TT--
T ss_pred EeeECCCccHHHHHHHHHHHH-cCCc
Confidence 679999999999999999996 7654
No 307
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.18 E-value=0.042 Score=53.42 Aligned_cols=27 Identities=26% Similarity=0.188 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||++.|+..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 24 IAKGEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999999964
No 308
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.17 E-value=0.044 Score=50.57 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 357889999999999999999999864
No 309
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.17 E-value=0.041 Score=53.04 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+|-+++|.|..|||||||++.|+..
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999999974
No 310
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.16 E-value=0.05 Score=53.86 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
....-+.|.|++|+||||+++.+++.
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999986
No 311
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.15 E-value=0.042 Score=53.54 Aligned_cols=27 Identities=30% Similarity=0.276 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 26 IFKNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 457889999999999999999999963
No 312
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=94.15 E-value=0.041 Score=53.78 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-+++|.|..|||||||++.|+..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 23 VAAGEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 347889999999999999999999964
No 313
>PRK13695 putative NTPase; Provisional
Probab=94.14 E-value=0.046 Score=50.52 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 012135 222 ITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
|.|+|.|..|+||||+++.|.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999998876
No 314
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=94.14 E-value=0.97 Score=45.31 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=34.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHh
Q 012135 357 PDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHEN 399 (470)
Q Consensus 357 PDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~ 399 (470)
--.+||-.+|.+.|.+=-..|..+.|..-+.+-++.|-..|++
T Consensus 102 t~Cvv~t~vp~e~~r~~Ns~~~~p~e~gy~~e~le~L~~RyEe 144 (281)
T KOG3062|consen 102 TYCVVHTAVPQELCREWNSEREDPGEDGYDDELLEALVQRYEE 144 (281)
T ss_pred eEEEEEecCCHHHHHHhcccCCCCCCCCCCHHHHHHHHHHhhC
Confidence 3578999999999988777776666655567888888888886
No 315
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=94.13 E-value=0.042 Score=53.97 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-+++|.|..|||||||++.|+..
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 27 IEPRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 347889999999999999999999964
No 316
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.12 E-value=0.046 Score=46.34 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 012135 223 TFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.|+|-|..|||||||++.|...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEECcCCCCHHHHHHHHhcC
Confidence 3889999999999999999975
No 317
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.12 E-value=0.043 Score=53.01 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.+|-+++|.|..|||||||++.|+..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred ecCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 357899999999999999999999964
No 318
>PRK10908 cell division protein FtsE; Provisional
Probab=94.12 E-value=0.044 Score=52.49 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999999863
No 319
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=94.12 E-value=0.04 Score=54.52 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 012135 222 ITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
|+|+|.|.+||||||+++.+.+.
T Consensus 1 miI~i~G~~gsGKstva~~~~~~ 23 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN 23 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc
Confidence 68999999999999999999874
No 320
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.11 E-value=0.043 Score=53.57 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
..++-+++|.|..|||||||++.|+.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 28 FNQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45788999999999999999999986
No 321
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=94.11 E-value=0.043 Score=54.07 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-+++|.|..|||||||++.|+..
T Consensus 36 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 36 IAKNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 357889999999999999999999964
No 322
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.09 E-value=0.046 Score=48.12 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=21.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIA 242 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLA 242 (470)
..+.+++|-|+.||||||++++|.
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 356899999999999999999987
No 323
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.09 E-value=0.044 Score=53.87 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||++.|+..
T Consensus 35 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 35 IPENEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 357889999999999999999999964
No 324
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=94.08 E-value=0.044 Score=53.05 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|.|..|||||||++.|+..
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999999964
No 325
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.08 E-value=0.044 Score=54.14 Aligned_cols=27 Identities=33% Similarity=0.287 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999964
No 326
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.07 E-value=0.046 Score=49.41 Aligned_cols=27 Identities=30% Similarity=0.318 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|+|||||++.|+..
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 357889999999999999999999863
No 327
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.07 E-value=0.044 Score=54.44 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999999999964
No 328
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.07 E-value=0.045 Score=53.42 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||++.|+..
T Consensus 27 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 27 IPQNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 457889999999999999999999964
No 329
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=94.06 E-value=0.044 Score=52.70 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-+++|.|..|||||||+++|+..
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~G~ 56 (226)
T cd03234 30 VESGQVMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCc
Confidence 347889999999999999999999964
No 330
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=94.06 E-value=0.045 Score=53.24 Aligned_cols=26 Identities=27% Similarity=0.210 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|.|..|||||||+++|+..
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47889999999999999999999963
No 331
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.06 E-value=0.048 Score=55.06 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELRD 250 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~ 250 (470)
.+..+|.|+|++|+|||||+..|.++ +...+
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~-~~~~g 57 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRE-LRERG 57 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHH-HHHTT
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHH-HhhcC
Confidence 46789999999999999999999987 44343
No 332
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.05 E-value=0.046 Score=53.95 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|-|..|||||||++.|+..
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47889999999999999999999864
No 333
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.04 E-value=0.045 Score=52.59 Aligned_cols=26 Identities=15% Similarity=0.084 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|-|..|||||||++.|+..
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999999963
No 334
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=94.04 E-value=0.046 Score=53.31 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||++.|+..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 24 IPKNQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 357899999999999999999999964
No 335
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.03 E-value=0.045 Score=52.88 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 45 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 45 VPRGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999963
No 336
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.03 E-value=0.047 Score=51.58 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++.+++|.|..|||||||++.|+..
T Consensus 28 i~~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 28 VPKGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 457899999999999999999999863
No 337
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=94.02 E-value=0.048 Score=51.38 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-+++|-|..|||||||++.|+..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999864
No 338
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.02 E-value=0.043 Score=53.53 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|.|..|||||||++.|+..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 47889999999999999999999964
No 339
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.01 E-value=0.3 Score=52.59 Aligned_cols=31 Identities=23% Similarity=0.148 Sum_probs=25.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
...++.+|++.|..||||||++..||.. +..
T Consensus 96 ~~~~~~vi~lvG~~GvGKTTtaaKLA~~-l~~ 126 (429)
T TIGR01425 96 KKGKQNVIMFVGLQGSGKTTTCTKLAYY-YQR 126 (429)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHH-HHH
Confidence 3345789999999999999999999976 543
No 340
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.01 E-value=0.047 Score=53.26 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 27 FEEKELTALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 357889999999999999999999964
No 341
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.99 E-value=0.05 Score=51.50 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 31 i~~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 31 VKAGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 457899999999999999999999863
No 342
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=93.99 E-value=0.047 Score=49.60 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=17.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+..|.|.|..|+||||+++.+.+.
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999988876
No 343
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.99 E-value=0.047 Score=54.99 Aligned_cols=28 Identities=25% Similarity=0.205 Sum_probs=25.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
...++.+++|-|+.|||||||+|.|+.-
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3457899999999999999999999974
No 344
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.98 E-value=0.048 Score=52.46 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 357889999999999999999999864
No 345
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.98 E-value=0.043 Score=52.20 Aligned_cols=27 Identities=30% Similarity=0.292 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhccc
Confidence 457889999999999999999999964
No 346
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=93.95 E-value=0.047 Score=53.17 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
..+|-+++|.|..|||||||++.|+.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 28 FYPNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 45788999999999999999999985
No 347
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=93.94 E-value=0.049 Score=52.91 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++.+++|.|..|||||||++.|+..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 23 VPTGSLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999999964
No 348
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.94 E-value=0.048 Score=54.20 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999999964
No 349
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.94 E-value=0.05 Score=53.18 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 27 FPENSVTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 357889999999999999999999964
No 350
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.93 E-value=0.05 Score=52.69 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 25 VDPGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999999999964
No 351
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=93.92 E-value=0.05 Score=53.02 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
..++-+++|.|..|||||||++.|+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 26 IEENQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35788999999999999999999996
No 352
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=93.92 E-value=0.052 Score=51.95 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||++.|+..
T Consensus 31 i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 31 VNAGECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999999999863
No 353
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=93.91 E-value=0.05 Score=51.82 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999999964
No 354
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.91 E-value=0.047 Score=57.01 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
..+|-+++|-|+.||||||+++++|-
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45788999999999999999999995
No 355
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=93.89 E-value=0.053 Score=51.95 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 37 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 37 LHPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999999864
No 356
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.89 E-value=0.047 Score=54.22 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||++.|+..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 24 FSLSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 346889999999999999999999864
No 357
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=93.88 E-value=0.12 Score=53.24 Aligned_cols=99 Identities=22% Similarity=0.236 Sum_probs=52.7
Q ss_pred eeccCCCcchHHHHHhhccchHHHHHHHHHHHHH---Hhh----HHHHHhhhcc--cccc-------cccchhhhhhhhh
Q 012135 137 LTIPGVGPRNLRKLVDNGIGDVAELKQLYKDKFW---EAS----QKMIEYLQSS--VGII-------HKNHAESITTFIK 200 (470)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~l~~~--~~~~-------~~~~~~~~~~~i~ 200 (470)
|.-+||||....||.++||.++.++-.+=+...- .-| +++.+.+..- .++. .|.....|.+.++
T Consensus 4 ~~~~g~~~~~~~~L~~~g~~t~~~~~~~~~~~L~~~~gls~~~~~~i~~~~~~~~~~~~~ta~~~~~~~~~~~~isTG~~ 83 (313)
T TIGR02238 4 LQAHGINAADIKKLKSAGICTVNGVIMTTRRALCKIKGLSEAKVDKIKEAASKIINPGFITAFEISQKRKKVLKITTGSQ 83 (313)
T ss_pred hhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHHhhhcccCccHHHHHHhhccCceeCCCCH
Confidence 4457899999999999999999887533222111 111 1111111111 1111 0000111112211
Q ss_pred hhhhhhhccCCCCCCCCCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 201 DSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
. .|+-| .-.--++.++-|.|..||||||++-.|+-
T Consensus 84 ~-LD~lL-------gGGi~~G~iteI~G~~GsGKTql~lqla~ 118 (313)
T TIGR02238 84 A-LDGIL-------GGGIESMSITEVFGEFRCGKTQLSHTLCV 118 (313)
T ss_pred H-HHHHh-------CCCCcCCeEEEEECCCCCCcCHHHHHHHH
Confidence 1 11111 11223678999999999999999988773
No 358
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=93.88 E-value=0.051 Score=52.44 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999864
No 359
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=93.88 E-value=0.047 Score=53.19 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
-.++-+++|.|..|||||||++.|+.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 30 INKGEIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 35788999999999999999999985
No 360
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.87 E-value=0.051 Score=53.78 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+|-+++|-|..|||||||+++|+..
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 44 IEKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 357889999999999999999999863
No 361
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.86 E-value=0.053 Score=52.95 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 27 IYENKITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 357889999999999999999999963
No 362
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.85 E-value=0.082 Score=53.93 Aligned_cols=26 Identities=35% Similarity=0.611 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+..|+|.|+.||||||+++.|...
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~ 167 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDE 167 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 45678999999999999999999875
No 363
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.85 E-value=0.054 Score=51.33 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-+++|.|..|||||||++.|+..
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 23 IKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999863
No 364
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=93.84 E-value=0.05 Score=54.08 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||++.|+..
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 30 VPGGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999864
No 365
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.84 E-value=0.052 Score=52.93 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 25 IEQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 357889999999999999999999963
No 366
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.83 E-value=0.054 Score=52.78 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|+|||||++.|+..
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 27 VQRGTVNALIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 457889999999999999999999974
No 367
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.82 E-value=0.052 Score=53.81 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|+.|||||||+++|+..
T Consensus 32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 32 IPKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999999964
No 368
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.82 E-value=0.052 Score=50.93 Aligned_cols=22 Identities=41% Similarity=0.696 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhh
Q 012135 224 FCVEGNISVGKTTFLQRIANETL 246 (470)
Q Consensus 224 IvIEG~dGSGKSTLaKlLAk~~L 246 (470)
|.|+|.+|+||||+++.+.+. +
T Consensus 2 i~iTG~pG~GKTTll~k~i~~-l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE-L 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH-H
T ss_pred EEEECcCCCCHHHHHHHHHHH-h
Confidence 789999999999999999887 6
No 369
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.81 E-value=0.055 Score=51.26 Aligned_cols=27 Identities=30% Similarity=0.270 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||++.|+..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999999864
No 370
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=93.78 E-value=0.059 Score=51.69 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
++.|+|.|..||||||+++.|.+. +.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~-l~ 26 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRA-LR 26 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh-hC
Confidence 468999999999999999999876 44
No 371
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=93.77 E-value=0.053 Score=53.40 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|+.|||||||++.|+..
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (262)
T PRK09984 27 IHHGEMVALLGPSGSGKSTLLRHLSGL 53 (262)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 357889999999999999999999964
No 372
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=93.77 E-value=0.05 Score=53.21 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
+|..+|+|.|...|||||||+.|... +..
T Consensus 2 ~K~~ivgiSG~TnsGKTTLak~l~~~-f~~ 30 (225)
T KOG3308|consen 2 MKTLIVGISGCTNSGKTTLAKSLHRF-FPG 30 (225)
T ss_pred ceEEEEEeecccCCCHhHHHHHHHHH-ccC
Confidence 56789999999999999999999986 543
No 373
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=93.77 E-value=0.051 Score=53.76 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 34 FPAGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 357889999999999999999999964
No 374
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.77 E-value=0.055 Score=52.86 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14249 27 FPERQITAIIGPSGCGKSTLLRALNRM 53 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 357889999999999999999999974
No 375
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.75 E-value=0.052 Score=54.03 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 30 IEDGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 347889999999999999999999964
No 376
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=93.75 E-value=0.053 Score=53.81 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 30 VPRGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999964
No 377
>PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria []. Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed.
Probab=93.74 E-value=0.04 Score=47.45 Aligned_cols=30 Identities=37% Similarity=0.458 Sum_probs=28.2
Q ss_pred CCCeeeccCCCcchHHHHHhhccchHHHHH
Q 012135 133 NPDLLTIPGVGPRNLRKLVDNGIGDVAELK 162 (470)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (470)
-.+|..||||||.-.+-|..-||.++++|+
T Consensus 11 ~~~L~~iP~IG~a~a~DL~~LGi~s~~~L~ 40 (93)
T PF11731_consen 11 LSDLTDIPNIGKATAEDLRLLGIRSPADLK 40 (93)
T ss_pred HHHHhcCCCccHHHHHHHHHcCCCCHHHHh
Confidence 457899999999999999999999999999
No 378
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.73 E-value=0.055 Score=49.25 Aligned_cols=28 Identities=36% Similarity=0.490 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELRD 250 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~~ 250 (470)
++|.|.|..+||||||++.|.++ |..++
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~-l~~~g 28 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE-LKRRG 28 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH-HHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HhHcC
Confidence 47899999999999999999987 54344
No 379
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.71 E-value=0.06 Score=51.60 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999964
No 380
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.71 E-value=0.072 Score=55.43 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=26.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANETLELRD 250 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~ 250 (470)
..++.+|.|.|.+||||||+++.|... +...+
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~-l~~~g 84 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMH-LIEQG 84 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHH-HHHCC
Confidence 457889999999999999999999886 55433
No 381
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.70 E-value=0.058 Score=51.60 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-+++|-|..|||||||++.|+..
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 347889999999999999999999864
No 382
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=93.70 E-value=0.057 Score=53.53 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||++.|+..
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 68 (267)
T PRK14235 42 IPEKTVTAFIGPSGCGKSTFLRCLNRM 68 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 357899999999999999999999974
No 383
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.70 E-value=0.057 Score=53.65 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 36 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 36 IPRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 457899999999999999999999963
No 384
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.69 E-value=0.061 Score=48.69 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++.+++|.|..|+||||+++.|+..
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~ 48 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGL 48 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999864
No 385
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=93.69 E-value=0.055 Score=53.74 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 35 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 61 (268)
T PRK10419 35 LKSGETVALLGRSGCGKSTLARLLVGL 61 (268)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999863
No 386
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.68 E-value=0.057 Score=53.32 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-+++|-|..|||||||++.|+..
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999964
No 387
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.68 E-value=0.075 Score=42.44 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 012135 221 RITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
+.+..|.|..||||||++..+.-
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44789999999999999999974
No 388
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.68 E-value=0.057 Score=50.99 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999999999863
No 389
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=93.67 E-value=0.067 Score=57.61 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
.++.+|+|.|..||||||+++.|... +.
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~l-L~ 237 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYL-FR 237 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH-hc
Confidence 36789999999999999999999875 54
No 390
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.67 E-value=0.057 Score=53.66 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 47 i~~Ge~~~l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 47 VREGEIFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999999964
No 391
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.65 E-value=0.059 Score=52.62 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
..++-+++|-|..|||||||++.|+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 26 IEEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhh
Confidence 35788999999999999999999985
No 392
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=93.65 E-value=0.057 Score=53.39 Aligned_cols=27 Identities=19% Similarity=0.179 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 34 IEEGETVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999999999964
No 393
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=93.64 E-value=0.054 Score=52.58 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 24 VRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 357889999999999999999999963
No 394
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.63 E-value=0.063 Score=50.46 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++++++|.|..|+|||||++.|...
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4589999999999999999999865
No 395
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.62 E-value=0.059 Score=53.19 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 25 LRPGEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999974
No 396
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.62 E-value=0.059 Score=54.02 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 30 i~~Ge~~~I~G~nGaGKSTLl~~l~G~ 56 (282)
T PRK13640 30 IPRGSWTALIGHNGSGKSTISKLINGL 56 (282)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcc
Confidence 357889999999999999999999974
No 397
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.58 E-value=0.059 Score=54.03 Aligned_cols=27 Identities=33% Similarity=0.398 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 34 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 34 FKKNKVTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999999964
No 398
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=93.57 E-value=0.064 Score=51.22 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|-|..|||||||++.|+..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46889999999999999999999964
No 399
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.57 E-value=0.063 Score=52.81 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||++.|+..
T Consensus 35 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 35 IPKNSVTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999999963
No 400
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.56 E-value=0.059 Score=53.95 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~laG~ 50 (272)
T PRK13547 24 IEPGRVTALLGRNGAGKSTLLKALAGD 50 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999864
No 401
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.55 E-value=0.061 Score=53.46 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-+++|.|..|||||||++.|+..
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 32 INEGEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999999964
No 402
>PF13245 AAA_19: Part of AAA domain
Probab=93.55 E-value=0.077 Score=43.51 Aligned_cols=24 Identities=42% Similarity=0.502 Sum_probs=17.8
Q ss_pred CcEEEEEcCCCCcHH-HHHHHHHHh
Q 012135 221 RITFCVEGNISVGKT-TFLQRIANE 244 (470)
Q Consensus 221 ~~~IvIEG~dGSGKS-TLaKlLAk~ 244 (470)
..+.+|.|++||||| |+++.++..
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 456788999999999 555555543
No 403
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.54 E-value=0.066 Score=52.32 Aligned_cols=27 Identities=30% Similarity=0.293 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+|-+++|.|..|||||||++.|+..
T Consensus 28 i~~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 28 IYKREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 457889999999999999999999964
No 404
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.53 E-value=0.18 Score=54.04 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++.+|+|-|+.|+||||++..|+.+
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~ 244 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAAR 244 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999876
No 405
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.52 E-value=0.063 Score=53.30 Aligned_cols=27 Identities=37% Similarity=0.402 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
..+.+-|++|+|||||+..+|++ ++..
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e-~~~~ 77 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANE-LGVN 77 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHH-CT--
T ss_pred ceEEEECCCccchhHHHHHHHhc-cCCC
Confidence 46789999999999999999998 7754
No 406
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.52 E-value=0.059 Score=58.37 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.+|..|+|.|..||||||++++|...
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999999863
No 407
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=93.50 E-value=0.067 Score=51.24 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 28 i~~G~~~~I~G~nGsGKStLl~~l~G~ 54 (220)
T TIGR02982 28 INPGEIVILTGPSGSGKTTLLTLIGGL 54 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999863
No 408
>PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains. There is a general polymerase fold consisting of three subdomains that have been likened to the fingers, palm, and thumb of a right hand. This entry represents the central three-helical region of DNA polymerase lambda referred to as the F and G helices of the fingers domain. Contacts with DNA involve this conserved helix-hairpin-helix motif in the fingers region which interacts with the primer strand. This motif is common to several DNA binding proteins and confers a sequence-independent interaction with the DNA backbone []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1KDH_A 1KEJ_A 1JMS_A 2IHM_A 3OGU_A 1MQ2_A 2P66_A 7ICI_A 1ZQN_A 1ZQK_A ....
Probab=93.50 E-value=0.037 Score=42.67 Aligned_cols=28 Identities=36% Similarity=0.640 Sum_probs=21.4
Q ss_pred eeeccCCCcchHHHHHhhccchHHHHHH
Q 012135 136 LLTIPGVGPRNLRKLVDNGIGDVAELKQ 163 (470)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (470)
+..|.||||.--++++++|+.++++|++
T Consensus 4 f~~I~GVG~~tA~~w~~~G~rtl~Dl~~ 31 (52)
T PF10391_consen 4 FTGIWGVGPKTARKWYAKGIRTLEDLRK 31 (52)
T ss_dssp HHTSTT--HHHHHHHHHTT--SHHHHHH
T ss_pred hhhcccccHHHHHHHHHhCCCCHHHHhh
Confidence 4569999999999999999999999964
No 409
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.49 E-value=0.068 Score=52.09 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||++.|+..
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 26 IPARQVTALIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 457889999999999999999999964
No 410
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.49 E-value=0.064 Score=52.46 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
..++-+++|-|..|||||||++.|+.
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 29 IPKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhc
Confidence 35788999999999999999999985
No 411
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.49 E-value=0.064 Score=53.54 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-+++|.|..|||||||+++|+..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 28 IPEGSKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 357899999999999999999999964
No 412
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.47 E-value=0.066 Score=52.40 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||++.|+..
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 30 ILKNSITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 457899999999999999999999964
No 413
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=93.47 E-value=0.066 Score=45.74 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 012135 224 FCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 224 IvIEG~dGSGKSTLaKlLAk 243 (470)
|+|-|..|+|||||++.|..
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999986
No 414
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.45 E-value=0.068 Score=52.63 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+|-+++|-|..|||||||++.|+..
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 56 (259)
T PRK14260 30 IYRNKVTAIIGPSGCGKSTFIKTLNRI 56 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 357899999999999999999999964
No 415
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.45 E-value=0.064 Score=52.33 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-++.+.|+.|||||||+|+|...
T Consensus 25 i~~Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 25 IPKGEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred ecCceEEEEECCCCCCHHHHHHHHHhh
Confidence 357889999999999999999999875
No 416
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=93.45 E-value=0.067 Score=53.05 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||++.|+..
T Consensus 43 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 43 FEKNKITALIGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 347889999999999999999999974
No 417
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=93.39 E-value=0.071 Score=53.05 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.+|-+++|-|..|||||||++.|+..
T Consensus 47 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 73 (271)
T PRK14238 47 IHENEVTAIIGPSGCGKSTYIKTLNRM 73 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 357889999999999999999999974
No 418
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.38 E-value=0.064 Score=51.07 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+ .+++|-|..|||||||++.|+..
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCC
Confidence 45 78999999999999999999864
No 419
>CHL00195 ycf46 Ycf46; Provisional
Probab=93.37 E-value=0.23 Score=54.24 Aligned_cols=95 Identities=14% Similarity=0.178 Sum_probs=54.4
Q ss_pred HHhhccchHHHHHHHHHHHHHHhh-HHHHHhhhcccccccccchhhhhhhhhhhhhhhhccCCCCCCC-CCCCCcEEEEE
Q 012135 150 LVDNGIGDVAELKQLYKDKFWEAS-QKMIEYLQSSVGIIHKNHAESITTFIKDSVDEELKDSNSDDKP-APKKRITFCVE 227 (470)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~K~~~IvIE 227 (470)
+++.|.-+...+....+.|.--.+ ..+.++..+++.+.+--....+-.++.+.... ... .... .-..++-|.+.
T Consensus 190 ~~~~~~~~~~~~~~i~~~k~q~~~~~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~-~~~---~~~~~gl~~pkGILL~ 265 (489)
T CHL00195 190 IATYKTIDENSIPLILEEKKQIISQTEILEFYSVNEKISDIGGLDNLKDWLKKRSTS-FSK---QASNYGLPTPRGLLLV 265 (489)
T ss_pred HHHcCCCChhhHHHHHHHHHHHHhhhccccccCCCCCHHHhcCHHHHHHHHHHHHHH-hhH---HHHhcCCCCCceEEEE
Confidence 344454455555555555544222 23567777777776665655554444432211 100 0000 11234568889
Q ss_pred cCCCCcHHHHHHHHHHhhhcCC
Q 012135 228 GNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 228 G~dGSGKSTLaKlLAk~~L~~~ 249 (470)
|++|+|||++++.++++ ++..
T Consensus 266 GPpGTGKTllAkaiA~e-~~~~ 286 (489)
T CHL00195 266 GIQGTGKSLTAKAIAND-WQLP 286 (489)
T ss_pred CCCCCcHHHHHHHHHHH-hCCC
Confidence 99999999999999997 6654
No 420
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.37 E-value=0.07 Score=52.04 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
..+++|.|..|+||||+++.+.+. +.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~-l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKR-LD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHh-cC
Confidence 447899999999999999999986 54
No 421
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=93.36 E-value=0.07 Score=52.81 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||++.|+..
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 33 IPKNQITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 457899999999999999999999963
No 422
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=93.35 E-value=0.07 Score=52.37 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 28 ANAGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999974
No 423
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.34 E-value=0.086 Score=54.31 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=28.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCc
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANETLELRDL 251 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~ 251 (470)
.-.+..+|.|+|++|+||||++..|..+ |...+.
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~~~-l~~~G~ 80 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALGRE-LRERGH 80 (323)
T ss_pred cCCCCcEEEecCCCCCchHHHHHHHHHH-HHHCCc
Confidence 4567899999999999999999999987 655554
No 424
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.33 E-value=0.065 Score=51.80 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+|-+++|.|..|||||||++.|+..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (237)
T PRK11614 28 INQGEIVTLIGANGAGKTTLLGTLCGD 54 (237)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 357889999999999999999999864
No 425
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=93.32 E-value=0.071 Score=52.88 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 36 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl 62 (267)
T PRK15112 36 LREGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 457889999999999999999999974
No 426
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=93.32 E-value=0.069 Score=54.05 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+|-+++|-|+.|||||||+++|+..
T Consensus 27 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl 53 (303)
T TIGR01288 27 IARGECFGLLGPNGAGKSTIARMLLGM 53 (303)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999999999964
No 427
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=93.30 E-value=0.068 Score=47.11 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 012135 222 ITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk 243 (470)
|.|+|-|..|+||||+++.|..
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhC
Confidence 6799999999999999999974
No 428
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=93.28 E-value=0.33 Score=48.36 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++.-.++-|.+|+||+|++..|.+.
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~ 38 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKN 38 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHh
Confidence 5788899999999999999999986
No 429
>PRK13768 GTPase; Provisional
Probab=93.28 E-value=0.077 Score=52.71 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
.++|+|.|+.||||||++..|+.. +..
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~-l~~ 28 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDW-LEE 28 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHH-HHh
Confidence 468999999999999999999986 543
No 430
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.28 E-value=0.25 Score=53.06 Aligned_cols=26 Identities=38% Similarity=0.445 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++.+|+|-|+.||||||++..|+..
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHH
Confidence 35679999999999999999999976
No 431
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.27 E-value=0.072 Score=53.62 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||+++|+..
T Consensus 29 i~~Ge~v~i~G~nGsGKSTLl~~l~Gl 55 (288)
T PRK13643 29 VKKGSYTALIGHTGSGKSTLLQHLNGL 55 (288)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhcC
Confidence 457889999999999999999999964
No 432
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.27 E-value=0.072 Score=51.03 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 221 RITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+.+++|.|+.|+||||+++.++..
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 478999999999999999999853
No 433
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=93.27 E-value=0.074 Score=53.83 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+|-+++|-|+.|||||||+++|+..
T Consensus 16 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 16 VREGEVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999999999964
No 434
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.25 E-value=0.25 Score=54.75 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++.+|+|.|+.|+||||++..|+..
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999999875
No 435
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=93.22 E-value=0.069 Score=52.81 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 56 (265)
T PRK10253 30 IPDGHFTAIIGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 357889999999999999999999864
No 436
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.22 E-value=0.074 Score=53.40 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||+++|+..
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~L~Gl 56 (286)
T PRK13646 30 FEQGKYYAIVGQTGSGKSTLIQNINAL 56 (286)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999999864
No 437
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=93.21 E-value=0.075 Score=52.15 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||++.|+..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 26 LQRGRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999964
No 438
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=93.20 E-value=0.069 Score=52.40 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 19 i~~Gei~~l~G~nGsGKSTLl~~l~Gl 45 (248)
T PRK03695 19 VRAGEILHLVGPNGAGKSTLLARMAGL 45 (248)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 357889999999999999999999864
No 439
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=93.19 E-value=0.072 Score=52.26 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+|-+++|-|..|||||||++.|+..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (256)
T TIGR03873 24 APPGSLTGLLGPNGSGKSTLLRLLAGA 50 (256)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 357899999999999999999999864
No 440
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.19 E-value=0.08 Score=52.31 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 39 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 65 (265)
T PRK14252 39 VHEKQVTALIGPSGCGKSTFLRCFNRM 65 (265)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 457889999999999999999999863
No 441
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.18 E-value=0.08 Score=52.27 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-+++|.|..|||||||+++|+..
T Consensus 30 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 56 (261)
T PRK14258 30 IYQSKVTAIIGPSGCGKSTFLKCLNRM 56 (261)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 457899999999999999999999974
No 442
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=93.16 E-value=0.079 Score=51.98 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 25 LPTGKITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999964
No 443
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.16 E-value=0.075 Score=50.46 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 220 KRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
++.+|+|.|+.|+||||+++.++.
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHH
Confidence 457999999999999999999984
No 444
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=93.16 E-value=0.11 Score=54.12 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=24.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELRD 250 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~~ 250 (470)
.-|.|+|..|+||||+++.|++. ++...
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~-l~~~~ 92 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAAR-LNWPC 92 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHH-HCCCe
Confidence 45899999999999999999997 88764
No 445
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.15 E-value=0.077 Score=53.15 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+|-+++|.|..|+|||||++.|+..
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~i~G~ 56 (279)
T PRK13635 30 VYEGEWVAIVGHNGSGKSTLAKLLNGL 56 (279)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 357889999999999999999999964
No 446
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.15 E-value=0.078 Score=53.07 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.+|-+++|.|..|||||||++.|+..
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 30 VKQGEWLSIIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999999864
No 447
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=93.15 E-value=0.076 Score=53.09 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+|-+++|.|..|||||||+++|+..
T Consensus 33 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 59 (280)
T PRK13633 33 VKKGEFLVILGRNGSGKSTIAKHMNAL 59 (280)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999964
No 448
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.14 E-value=0.073 Score=46.63 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 012135 223 TFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+++|.|..|+||||++..++..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH
Confidence 4789999999999999999876
No 449
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.14 E-value=0.074 Score=55.82 Aligned_cols=26 Identities=38% Similarity=0.363 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
..++-|+++=|+.||||||++++||-
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 35778999999999999999999995
No 450
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.11 E-value=0.084 Score=51.45 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
..++-+++|.|..|||||||++.|+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK14266 26 IPKNSVTALIGPSGCGKSTFIRTLNR 51 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 35788999999999999999999985
No 451
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=93.11 E-value=0.09 Score=47.33 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+...|+|-|..||||||+++.|...
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcC
Confidence 34677999999999999999999863
No 452
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.09 E-value=0.081 Score=52.82 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.+|-+++|.|..|||||||++.|+..
T Consensus 47 i~~Ge~~~liG~NGsGKSTLlk~L~Gl 73 (264)
T PRK13546 47 AYEGDVIGLVGINGSGKSTLSNIIGGS 73 (264)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999999964
No 453
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=93.08 E-value=0.076 Score=49.08 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 012135 222 ITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+.|.|-|.+|||||||++.|...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 35788999999999999999875
No 454
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.08 E-value=0.089 Score=49.03 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=24.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELRD 250 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~~ 250 (470)
++|.|.|..||||||+++.|.+. |...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~-l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA-LSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHHcC
Confidence 47899999999999999999987 65544
No 455
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.08 E-value=0.071 Score=53.59 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=24.8
Q ss_pred hhhccCCCCCCCCCCCCcEEEEEcCCCCcHHHHHHHH
Q 012135 205 EELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRI 241 (470)
Q Consensus 205 ~~~~~~~~~~~~~~~K~~~IvIEG~dGSGKSTLaKlL 241 (470)
++|+.++-. -..+.+++|.|..|||||||++.+
T Consensus 9 ~nl~~v~~~----ip~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 9 NNLKNIDVD----IPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred hcCCCceee----ccCCcEEEEECCCCCchHHHHHHH
Confidence 555554432 346889999999999999999744
No 456
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=93.08 E-value=0.082 Score=52.57 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||++.|+..
T Consensus 48 i~~Ge~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 48 IPKNRVTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 357899999999999999999999864
No 457
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.07 E-value=0.081 Score=52.32 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|.|..|||||||+++|+..
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~iaG~ 59 (257)
T PRK14246 34 PNNSIFGIMGPSGSGKSTLLKVLNRL 59 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999999964
No 458
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.05 E-value=0.085 Score=50.99 Aligned_cols=27 Identities=37% Similarity=0.356 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.++-+++|.|..|+|||||++.|+..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 23 IKEGEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 347889999999999999999999974
No 459
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.04 E-value=0.081 Score=52.76 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.+|-+++|.|..|||||||+++|+..
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 51 (275)
T PRK13639 25 AEKGEMVALLGPNGAGKSTLFLHFNGI 51 (275)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999864
No 460
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.04 E-value=0.083 Score=52.75 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.+|-+++|-|..|||||||++.|+..
T Consensus 27 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl 53 (277)
T PRK13652 27 APRNSRIAVIGPNGAGKSTLFRHFNGI 53 (277)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999999964
No 461
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.03 E-value=0.085 Score=52.16 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=19.6
Q ss_pred EEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 226 VEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 226 IEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
|-|+.||||||+++.+.++ +...
T Consensus 1 ViGpaGSGKTT~~~~~~~~-~~~~ 23 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW-LESN 23 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH-HTTT
T ss_pred CCCCCCCCHHHHHHHHHHH-HHhc
Confidence 5799999999999999997 6654
No 462
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.02 E-value=0.11 Score=48.71 Aligned_cols=34 Identities=29% Similarity=0.315 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCCceEeccC
Q 012135 223 TFCVEGNISVGKTTFLQRIANETLELRDLVEIVPE 257 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~E 257 (470)
+|.|.|+.||||||++..++.. .+.+.++..+.+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~-~~~~~~y~at~~ 34 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE-LGGPVTYIATAE 34 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh-cCCCeEEEEccC
Confidence 4789999999999999999875 443433333433
No 463
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.01 E-value=0.084 Score=52.69 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|||||||++.|+..
T Consensus 43 i~~Ge~~~IiG~nGsGKSTLl~~l~Gl 69 (274)
T PRK14265 43 IPAKKIIAFIGPSGCGKSTLLRCFNRM 69 (274)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 357889999999999999999999863
No 464
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.01 E-value=0.085 Score=52.28 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|+|||||++.|+..
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (261)
T PRK14263 31 IRKNEITGFIGPSGCGKSTVLRSLNRM 57 (261)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 457889999999999999999999864
No 465
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.01 E-value=0.083 Score=53.12 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
..+|-+++|-|..|||||||++.|+.
T Consensus 62 i~~Ge~~~l~G~nGsGKSTLl~~L~G 87 (286)
T PRK14275 62 ILSKYVTAIIGPSGCGKSTFLRAINR 87 (286)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35788999999999999999999986
No 466
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.01 E-value=0.24 Score=51.65 Aligned_cols=80 Identities=25% Similarity=0.346 Sum_probs=51.3
Q ss_pred HhhHHHHHhhhcccccccc-cchhhhhhhhhhhhhhhhccCCCC--C--CCCCCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 012135 171 EASQKMIEYLQSSVGIIHK-NHAESITTFIKDSVDEELKDSNSD--D--KPAPKKRITFCVEGNISVGKTTFLQRIANET 245 (470)
Q Consensus 171 ~~~~~~~~~l~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~--~--~~~~~K~~~IvIEG~dGSGKSTLaKlLAk~~ 245 (470)
...+.+++.|+..++...+ .....|-.-+++++.+.+..+++. + .+...++.+|.|-|..|+||||-+-.||.+
T Consensus 84 e~~~~i~~~l~~~~~~~~~~~~~~~v~~~l~~~l~~il~~~~~~~~~~~~~~~~~p~Vil~vGVNG~GKTTTIaKLA~~- 162 (340)
T COG0552 84 ETAEEIIEELRKREGKKKKIKDEETVKEALREALIEILRPVDKVDLPLEIPKEKKPFVILFVGVNGVGKTTTIAKLAKY- 162 (340)
T ss_pred HHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHhcccccccchhhhccCCCcEEEEEEecCCCchHhHHHHHHHH-
Confidence 3445556666665332222 134445555666776777665442 1 124457999999999999999999999987
Q ss_pred hcCCCc
Q 012135 246 LELRDL 251 (470)
Q Consensus 246 L~~~~~ 251 (470)
|...++
T Consensus 163 l~~~g~ 168 (340)
T COG0552 163 LKQQGK 168 (340)
T ss_pred HHHCCC
Confidence 555543
No 467
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.00 E-value=0.086 Score=52.63 Aligned_cols=27 Identities=22% Similarity=0.113 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+|-+++|.|..|||||||++.|+..
T Consensus 30 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 56 (277)
T PRK13642 30 ITKGEWVSIIGQNGSGKSTTARLIDGL 56 (277)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 457899999999999999999999964
No 468
>CHL00181 cbbX CbbX; Provisional
Probab=92.99 E-value=0.097 Score=53.13 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++..|.|.|++|+||||+|+.|++.
T Consensus 57 ~~~~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 57 NPGLHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999986
No 469
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=92.99 E-value=0.087 Score=55.09 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=26.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
.++.+|.|.|..|||||||++.|.++ |..+
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~-l~~~ 32 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRR-LSER 32 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHH-HhhC
Confidence 36889999999999999999999987 6644
No 470
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=92.98 E-value=0.083 Score=53.87 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||++.|+..
T Consensus 30 i~~Ge~v~iiG~nGsGKSTLl~~L~Gl 56 (305)
T PRK13651 30 INQGEFIAIIGQTGSGKTTFIEHLNAL 56 (305)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 457889999999999999999999964
No 471
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.96 E-value=0.086 Score=52.98 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+|-+++|-|..|||||||++.|+..
T Consensus 30 i~~Ge~~~iiG~NGaGKSTLl~~l~Gl 56 (287)
T PRK13641 30 LEEGSFVALVGHTGSGKSTLMQHFNAL 56 (287)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999999864
No 472
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=92.96 E-value=0.091 Score=51.75 Aligned_cols=27 Identities=15% Similarity=0.108 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||++.|+..
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (257)
T cd03288 44 IKPGQKVGICGRTGSGKSSLSLAFFRM 70 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 457889999999999999999999874
No 473
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=92.94 E-value=0.083 Score=53.13 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=24.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
...++-+++|-|+.|||||||+|.+..
T Consensus 26 ~v~~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 26 SVEKGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 345788999999999999999999976
No 474
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.93 E-value=0.096 Score=48.10 Aligned_cols=22 Identities=32% Similarity=0.279 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 012135 223 TFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+|.+.|..|+||||++..|+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999876
No 475
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=92.90 E-value=0.12 Score=48.67 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcCCCc
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLELRDL 251 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~ 251 (470)
.++|.|.|.-+||||||++.|... |..+++
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~-L~~~G~ 31 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRK-LKARGY 31 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHH-HHhCCc
Confidence 478999999999999999999987 777774
No 476
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.90 E-value=0.1 Score=51.95 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
+.-|.++|+.|+||||+++.|++. ++..
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~-lg~~ 48 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARK-RDRP 48 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH-hCCC
Confidence 456778999999999999999986 6654
No 477
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.90 E-value=0.13 Score=51.50 Aligned_cols=24 Identities=33% Similarity=0.279 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 221 RITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.-+|.|.|..||||||+++.|...
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~ 103 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhh
Confidence 347999999999999999988765
No 478
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.88 E-value=0.11 Score=48.13 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q 012135 223 TFCVEGNISVGKTTFLQRIANETLELRD 250 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~~L~~~~ 250 (470)
+|+|.|..||||||++..|.+. +..++
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~-l~~~G 27 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKA-LKARG 27 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHH-HHhcC
Confidence 4789999999999999999987 65444
No 479
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=92.88 E-value=0.081 Score=46.19 Aligned_cols=20 Identities=25% Similarity=0.599 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 012135 224 FCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 224 IvIEG~dGSGKSTLaKlLAk 243 (470)
|+|-|..|||||||++.|.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 78999999999999999984
No 480
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.88 E-value=0.093 Score=52.80 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|.|..|||||||++.|+..
T Consensus 63 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl 88 (285)
T PRK14254 63 PENQVTAMIGPSGCGKSTFLRCINRM 88 (285)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 57889999999999999999999964
No 481
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.87 E-value=0.088 Score=54.09 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+|-+++|.|..|||||||++.|+..
T Consensus 49 i~~Ge~~~I~G~nGsGKSTLl~~L~Gl 75 (320)
T PRK13631 49 FEKNKIYFIIGNSGSGKSTLVTHFNGL 75 (320)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999999964
No 482
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.86 E-value=0.09 Score=52.88 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+|-+++|.|..|||||||++.|+..
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~l~Gl 56 (287)
T PRK13637 30 IEDGEFVGLIGHTGSGKSTLIQHLNGL 56 (287)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 357889999999999999999999964
No 483
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.86 E-value=0.091 Score=52.56 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|.|..|||||||++.|+..
T Consensus 45 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 45 PARAVTSLMGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 47889999999999999999999864
No 484
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=92.85 E-value=0.088 Score=54.51 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||++.|+..
T Consensus 28 i~~Gei~~iiG~nGsGKSTLlk~L~Gl 54 (343)
T PRK11153 28 IPAGEIFGVIGASGAGKSTLIRCINLL 54 (343)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 357889999999999999999999964
No 485
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=92.85 E-value=0.082 Score=45.77 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 012135 224 FCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 224 IvIEG~dGSGKSTLaKlLAk~ 244 (470)
|+|-|..|||||||++.|...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999999753
No 486
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=92.85 E-value=0.1 Score=50.06 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
|.+|+|-|+.|+||||.+-.||.+ +.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~-~~ 26 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR-LK 26 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH-HH
T ss_pred CEEEEEECCCCCchHhHHHHHHHH-Hh
Confidence 578999999999999999999987 44
No 487
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.84 E-value=0.091 Score=52.43 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+|-+++|-|..|||||||++.|+..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (274)
T PRK13644 25 IKKGEYIGIIGKNGSGKSTLALHLNGL 51 (274)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999999964
No 488
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=92.81 E-value=0.1 Score=58.18 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=26.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCce
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELRDLV 252 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~ 252 (470)
+++++++.|++|+|||||++.|++. ++...++
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~-le~~~~Y 133 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSL-MERVPIY 133 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHH-HHhCcce
Confidence 5679999999999999999999986 6654433
No 489
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=92.80 E-value=0.096 Score=45.58 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 221 RITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
|..|++-|..|+||||++..|...
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~ 24 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGR 24 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCC
Confidence 467999999999999999999753
No 490
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.78 E-value=0.6 Score=50.32 Aligned_cols=27 Identities=26% Similarity=0.183 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++.+|.+.|..||||||++-.|+.+
T Consensus 96 ~~~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 96 KKPPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 346789999999999999999999876
No 491
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.78 E-value=0.12 Score=51.29 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
.|-+.+|-|+.|+||||++|.|.-+ +.
T Consensus 26 pGev~ailGPNGAGKSTlLk~LsGe-l~ 52 (259)
T COG4559 26 PGEVLAILGPNGAGKSTLLKALSGE-LS 52 (259)
T ss_pred CCcEEEEECCCCccHHHHHHHhhCc-cC
Confidence 5678999999999999999999987 55
No 492
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.78 E-value=0.1 Score=41.59 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 223 TFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
+|++.|..|+||||++..|+.. +..
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~-l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAA-LAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHH-HHH
Confidence 4789999999999999999987 543
No 493
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=92.76 E-value=0.093 Score=54.75 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|+.|||||||++.|+..
T Consensus 29 i~~Ge~~~llGpsGsGKSTLLr~IaGl 55 (351)
T PRK11432 29 IKQGTMVTLLGPSGCGKTTVLRLVAGL 55 (351)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 346889999999999999999999964
No 494
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=92.75 E-value=0.092 Score=54.56 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|-|+.|||||||++.|+..
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl 47 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINAISGL 47 (352)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999964
No 495
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.74 E-value=0.094 Score=51.13 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
.++..++|-|..|||||||+|+|+.
T Consensus 37 ~~~QTlaiIG~NGSGKSTLakMlaG 61 (267)
T COG4167 37 REGQTLAIIGENGSGKSTLAKMLAG 61 (267)
T ss_pred cCCcEEEEEccCCCcHhHHHHHHhc
Confidence 4678999999999999999999995
No 496
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=92.72 E-value=0.094 Score=54.48 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|-|+.|||||||++.|+..
T Consensus 21 ~~Gei~~l~G~nGsGKSTLl~~iaGl 46 (354)
T TIGR02142 21 PGQGVTAIFGRSGSGKTTLIRLIAGL 46 (354)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999964
No 497
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=92.72 E-value=0.095 Score=54.75 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|+.|||||||+++|+-.
T Consensus 27 i~~Ge~~~llG~sGsGKSTLLr~iaGl 53 (356)
T PRK11650 27 VADGEFIVLVGPSGCGKSTLLRMVAGL 53 (356)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 347889999999999999999999963
No 498
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.69 E-value=0.1 Score=50.67 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|.|..|+|||||++.|+..
T Consensus 23 ~~Ge~~~i~G~nG~GKStLl~~l~G~ 48 (235)
T cd03299 23 ERGDYFVILGPTGSGKSVLLETIAGF 48 (235)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 47889999999999999999999863
No 499
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=92.67 E-value=0.096 Score=54.87 Aligned_cols=27 Identities=26% Similarity=0.243 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|+.|||||||++.|+..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLL~~iaGl 52 (369)
T PRK11000 26 IHEGEFVVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 347889999999999999999999964
No 500
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=92.62 E-value=0.11 Score=48.28 Aligned_cols=25 Identities=44% Similarity=0.565 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
.+..-|+|-|++||||||+++.|..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~ 36 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN 36 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS
T ss_pred CcEEEEEEECCCccchHHHHHHhhh
Confidence 5677899999999999999999974
Done!