Query 012135
Match_columns 470
No_of_seqs 238 out of 1439
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 03:27:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012135.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012135hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ocp_A DGK, deoxyguanosine kin 100.0 3.5E-28 1.2E-32 231.8 20.5 213 220-441 1-238 (241)
2 4hlc_A DTMP kinase, thymidylat 100.0 2.2E-27 7.6E-32 224.8 18.1 196 221-442 2-203 (205)
3 1p5z_B DCK, deoxycytidine kina 99.9 4.2E-27 1.4E-31 227.5 16.9 214 217-442 20-261 (263)
4 2vp4_A Deoxynucleoside kinase; 99.9 1.3E-25 4.3E-30 213.6 17.2 206 217-439 16-224 (230)
5 1p6x_A Thymidine kinase; P-loo 99.9 4.5E-26 1.5E-30 231.7 12.0 188 220-417 6-220 (334)
6 3ld9_A DTMP kinase, thymidylat 99.9 2.9E-25 1E-29 213.9 13.3 195 218-443 18-219 (223)
7 4tmk_A Protein (thymidylate ki 99.9 2.5E-24 8.4E-29 205.5 18.6 196 219-442 1-209 (213)
8 4edh_A DTMP kinase, thymidylat 99.9 2E-24 6.7E-29 205.9 17.8 198 219-443 4-210 (213)
9 3hjn_A DTMP kinase, thymidylat 99.9 3E-24 1E-28 201.8 16.3 191 222-442 1-194 (197)
10 1of1_A Thymidine kinase; trans 99.9 2.9E-25 9.7E-30 228.9 8.2 173 219-402 47-244 (376)
11 2jaq_A Deoxyguanosine kinase; 99.9 1.2E-23 4.2E-28 191.9 17.0 193 222-438 1-199 (205)
12 1e2k_A Thymidine kinase; trans 99.9 4.2E-25 1.4E-29 224.3 7.7 172 219-402 2-199 (331)
13 3tmk_A Thymidylate kinase; pho 99.9 2.9E-24 1E-28 205.8 12.2 194 220-444 4-207 (216)
14 1osn_A Thymidine kinase, VZV-T 99.9 2.2E-24 7.6E-29 219.8 8.3 174 219-402 10-211 (341)
15 3lv8_A DTMP kinase, thymidylat 99.9 4E-23 1.4E-27 200.4 16.4 198 217-442 23-231 (236)
16 3v9p_A DTMP kinase, thymidylat 99.9 5.9E-24 2E-28 205.1 10.1 193 219-438 23-225 (227)
17 4eaq_A DTMP kinase, thymidylat 99.8 1.4E-20 4.9E-25 180.2 14.1 195 218-441 23-226 (229)
18 2z0h_A DTMP kinase, thymidylat 99.8 1.3E-18 4.4E-23 158.3 17.6 188 222-441 1-193 (197)
19 2plr_A DTMP kinase, probable t 99.8 7.5E-18 2.6E-22 154.4 17.8 187 219-441 2-209 (213)
20 2pbr_A DTMP kinase, thymidylat 99.7 4.9E-17 1.7E-21 146.9 16.6 186 222-439 1-191 (195)
21 2v54_A DTMP kinase, thymidylat 99.7 3.1E-16 1.1E-20 143.5 15.7 186 220-442 3-193 (204)
22 1nn5_A Similar to deoxythymidy 99.7 1E-15 3.5E-20 140.9 17.1 191 220-442 8-203 (215)
23 1gtv_A TMK, thymidylate kinase 99.6 4.1E-17 1.4E-21 150.4 4.2 189 222-433 1-207 (214)
24 2wwf_A Thymidilate kinase, put 99.6 2.7E-15 9.4E-20 138.0 12.4 187 219-439 8-199 (212)
25 3kb2_A SPBC2 prophage-derived 99.6 1.9E-14 6.4E-19 127.5 16.5 164 222-439 2-166 (173)
26 1nks_A Adenylate kinase; therm 99.5 1.4E-13 4.8E-18 123.8 10.9 178 222-437 2-193 (194)
27 1tev_A UMP-CMP kinase; ploop, 99.5 1.1E-12 3.8E-17 118.1 14.8 184 219-438 1-193 (196)
28 3czq_A Putative polyphosphate 99.4 5.3E-13 1.8E-17 134.1 11.5 163 219-416 84-260 (304)
29 2rhm_A Putative kinase; P-loop 99.4 2.3E-12 7.8E-17 116.5 11.8 175 219-442 3-187 (193)
30 2c95_A Adenylate kinase 1; tra 99.3 1.9E-11 6.5E-16 110.7 14.8 76 356-439 112-193 (196)
31 2cdn_A Adenylate kinase; phosp 99.3 1.5E-11 5.2E-16 113.1 13.9 70 356-437 126-199 (201)
32 3a4m_A L-seryl-tRNA(SEC) kinas 99.3 2.5E-11 8.4E-16 117.4 15.2 168 220-438 3-172 (260)
33 1kht_A Adenylate kinase; phosp 99.3 1.7E-11 5.8E-16 110.2 12.5 75 356-437 114-191 (192)
34 2bwj_A Adenylate kinase 5; pho 99.3 7.7E-12 2.6E-16 113.6 10.3 177 220-439 11-196 (199)
35 1qf9_A UMP/CMP kinase, protein 99.3 8.8E-11 3E-15 105.4 15.6 76 356-439 110-191 (194)
36 3be4_A Adenylate kinase; malar 99.3 6.1E-11 2.1E-15 111.0 15.0 30 219-249 3-32 (217)
37 3t61_A Gluconokinase; PSI-biol 99.3 4.5E-11 1.5E-15 110.0 13.3 70 356-439 110-179 (202)
38 3lw7_A Adenylate kinase relate 99.2 7.9E-11 2.7E-15 103.2 12.7 75 356-439 101-176 (179)
39 3czp_A Putative polyphosphate 99.2 7.4E-11 2.5E-15 125.7 14.8 184 219-442 41-238 (500)
40 1zak_A Adenylate kinase; ATP:A 99.2 2.9E-10 9.9E-15 106.3 16.4 80 356-444 108-215 (222)
41 1aky_A Adenylate kinase; ATP:A 99.2 1.8E-10 6.3E-15 107.5 14.8 30 219-249 2-31 (220)
42 3czp_A Putative polyphosphate 99.2 7.5E-11 2.6E-15 125.7 13.3 163 219-416 298-474 (500)
43 2xb4_A Adenylate kinase; ATP-b 99.2 1.4E-10 4.9E-15 109.2 13.1 26 222-248 1-26 (223)
44 1ak2_A Adenylate kinase isoenz 99.2 6.2E-10 2.1E-14 105.3 16.7 29 219-248 14-42 (233)
45 1ukz_A Uridylate kinase; trans 99.2 5.7E-10 1.9E-14 102.3 15.9 30 218-248 12-41 (203)
46 3cm0_A Adenylate kinase; ATP-b 99.1 2.8E-10 9.6E-15 102.6 11.9 72 356-437 105-184 (186)
47 2yvu_A Probable adenylyl-sulfa 99.1 1.5E-10 5.1E-15 105.2 10.1 32 217-249 9-40 (186)
48 2vli_A Antibiotic resistance p 99.1 3.2E-10 1.1E-14 101.7 11.4 76 359-454 107-182 (183)
49 1e4v_A Adenylate kinase; trans 99.1 7.5E-10 2.6E-14 103.0 12.5 27 222-249 1-27 (214)
50 3vaa_A Shikimate kinase, SK; s 99.1 1.8E-09 6.1E-14 99.6 14.6 78 356-441 117-197 (199)
51 3fb4_A Adenylate kinase; psych 99.1 1.3E-09 4.3E-14 100.9 13.6 27 222-249 1-27 (216)
52 3dl0_A Adenylate kinase; phosp 99.1 3.3E-10 1.1E-14 105.0 9.5 27 222-249 1-27 (216)
53 3tlx_A Adenylate kinase 2; str 99.1 1.5E-09 5.1E-14 104.0 13.9 29 219-248 27-55 (243)
54 1ly1_A Polynucleotide kinase; 99.0 2.3E-09 7.9E-14 95.3 12.1 42 356-400 105-146 (181)
55 1m7g_A Adenylylsulfate kinase; 99.0 2.3E-09 7.8E-14 99.7 11.4 28 219-247 23-50 (211)
56 1zd8_A GTP:AMP phosphotransfer 99.0 9.8E-10 3.4E-14 103.1 9.0 30 219-249 5-34 (227)
57 2pt5_A Shikimate kinase, SK; a 99.0 1.4E-09 4.8E-14 96.3 9.0 27 222-249 1-27 (168)
58 4eun_A Thermoresistant glucoki 99.0 1.3E-09 4.4E-14 100.6 8.4 68 357-438 125-192 (200)
59 3rhf_A Putative polyphosphate 98.9 3.2E-09 1.1E-13 105.9 10.3 165 219-416 73-249 (289)
60 3umf_A Adenylate kinase; rossm 98.9 1.8E-08 6.3E-13 96.3 15.2 31 218-249 26-56 (217)
61 3trf_A Shikimate kinase, SK; a 98.9 6.6E-09 2.3E-13 93.6 10.7 75 358-442 99-177 (185)
62 3iij_A Coilin-interacting nucl 98.9 6.9E-09 2.4E-13 93.4 10.3 74 357-439 97-173 (180)
63 1knq_A Gluconate kinase; ALFA/ 98.9 8.6E-08 2.9E-12 85.7 16.8 68 357-438 103-172 (175)
64 3sr0_A Adenylate kinase; phosp 98.9 4.3E-08 1.5E-12 92.6 15.5 27 222-249 1-27 (206)
65 1e6c_A Shikimate kinase; phosp 98.8 1.3E-08 4.5E-13 90.3 10.0 72 357-438 94-169 (173)
66 2qt1_A Nicotinamide riboside k 98.8 2.9E-08 1E-12 91.5 11.4 73 356-439 129-205 (207)
67 1zuh_A Shikimate kinase; alpha 98.8 1.7E-08 5.8E-13 89.9 9.4 27 222-249 8-34 (168)
68 1qhx_A CPT, protein (chloramph 98.7 1.4E-07 4.9E-12 84.1 13.6 30 219-249 1-30 (178)
69 3gmt_A Adenylate kinase; ssgci 98.7 2E-08 6.9E-13 97.2 8.2 28 221-249 8-35 (230)
70 2iyv_A Shikimate kinase, SK; t 98.7 2E-08 6.7E-13 90.6 7.6 73 357-438 94-167 (184)
71 1uj2_A Uridine-cytidine kinase 98.7 4.7E-08 1.6E-12 93.5 10.6 31 218-249 19-49 (252)
72 3nwj_A ATSK2; P loop, shikimat 98.7 5.5E-08 1.9E-12 94.6 11.0 77 358-442 143-239 (250)
73 1cke_A CK, MSSA, protein (cyti 98.7 2.4E-07 8.2E-12 85.8 14.6 78 356-441 140-224 (227)
74 1via_A Shikimate kinase; struc 98.7 1.6E-08 5.4E-13 90.9 6.4 71 357-439 93-166 (175)
75 4e22_A Cytidylate kinase; P-lo 98.7 1.1E-07 3.7E-12 91.5 12.0 30 219-249 25-54 (252)
76 2pez_A Bifunctional 3'-phospho 98.7 2.4E-08 8.2E-13 90.0 6.2 27 219-246 3-29 (179)
77 1ltq_A Polynucleotide kinase; 98.6 1.9E-06 6.5E-11 83.6 18.5 59 356-417 105-169 (301)
78 1vht_A Dephospho-COA kinase; s 98.6 5.5E-07 1.9E-11 83.5 14.0 69 356-441 125-196 (218)
79 1kag_A SKI, shikimate kinase I 98.6 1.2E-07 4E-12 84.3 9.0 72 357-438 97-171 (173)
80 3fdi_A Uncharacterized protein 98.6 3E-07 1E-11 86.1 11.7 30 219-249 4-33 (201)
81 1x6v_B Bifunctional 3'-phospho 98.6 8.1E-08 2.8E-12 105.0 8.6 28 218-246 49-76 (630)
82 1y63_A LMAJ004144AAA protein; 98.6 1.8E-07 6.1E-12 85.2 8.9 27 218-244 7-33 (184)
83 3hdt_A Putative kinase; struct 98.5 1.2E-06 4.2E-11 83.7 14.1 30 219-249 12-41 (223)
84 3ake_A Cytidylate kinase; CMP 98.5 2.7E-06 9.2E-11 77.3 15.6 70 356-437 135-206 (208)
85 2h92_A Cytidylate kinase; ross 98.5 1.5E-06 5E-11 80.4 13.0 30 219-249 1-30 (219)
86 2qor_A Guanylate kinase; phosp 98.4 4.2E-06 1.4E-10 77.1 14.1 27 220-247 11-37 (204)
87 1q3t_A Cytidylate kinase; nucl 98.4 4.8E-06 1.6E-10 78.6 14.6 30 218-248 13-42 (236)
88 2f6r_A COA synthase, bifunctio 98.4 2.1E-06 7.1E-11 84.1 12.4 28 219-248 73-100 (281)
89 3r20_A Cytidylate kinase; stru 98.4 4.5E-06 1.5E-10 80.6 14.6 80 356-442 145-230 (233)
90 2bbw_A Adenylate kinase 4, AK4 98.4 3.3E-06 1.1E-10 80.0 12.7 29 220-249 26-54 (246)
91 2if2_A Dephospho-COA kinase; a 98.3 1.5E-06 5.3E-11 79.4 9.0 24 356-379 123-146 (204)
92 3asz_A Uridine kinase; cytidin 98.3 9.2E-06 3.2E-10 74.5 13.2 77 356-441 124-205 (211)
93 3uie_A Adenylyl-sulfate kinase 98.3 1.2E-05 4.2E-10 73.8 13.6 28 219-247 23-50 (200)
94 1jjv_A Dephospho-COA kinase; P 98.2 6E-06 2E-10 75.7 11.1 25 222-248 3-27 (206)
95 3tr0_A Guanylate kinase, GMP k 98.2 1.7E-05 5.8E-10 72.0 13.2 25 220-244 6-30 (205)
96 2gks_A Bifunctional SAT/APS ki 98.2 1.5E-06 5.1E-11 93.4 6.5 29 220-249 371-399 (546)
97 4i1u_A Dephospho-COA kinase; s 98.1 3.1E-06 1.1E-10 80.7 7.2 26 222-249 10-35 (210)
98 1m8p_A Sulfate adenylyltransfe 98.1 2.8E-06 9.5E-11 91.8 7.4 29 219-248 394-422 (573)
99 2grj_A Dephospho-COA kinase; T 98.1 7.6E-06 2.6E-10 76.3 9.4 29 220-249 11-39 (192)
100 1svm_A Large T antigen; AAA+ f 98.1 3.8E-08 1.3E-12 101.4 -7.2 50 356-405 300-354 (377)
101 3zvl_A Bifunctional polynucleo 98.0 3.7E-05 1.3E-09 79.4 13.3 44 356-399 336-381 (416)
102 1a7j_A Phosphoribulokinase; tr 97.9 6.7E-06 2.3E-10 81.2 5.3 48 356-405 147-199 (290)
103 1gvn_B Zeta; postsegregational 97.9 0.0001 3.5E-09 72.4 12.7 28 217-244 29-56 (287)
104 2bdt_A BH3686; alpha-beta prot 97.8 0.00011 3.8E-09 66.2 10.9 66 358-434 103-168 (189)
105 3c8u_A Fructokinase; YP_612366 97.7 0.00012 4.1E-09 67.6 10.1 28 219-247 20-47 (208)
106 3tau_A Guanylate kinase, GMP k 97.7 0.0001 3.6E-09 68.3 9.1 25 220-244 7-31 (208)
107 2p5t_B PEZT; postsegregational 97.7 0.00033 1.1E-08 66.9 12.9 30 217-247 28-57 (253)
108 1sq5_A Pantothenate kinase; P- 97.6 0.00033 1.1E-08 69.2 11.2 29 218-247 77-105 (308)
109 3a00_A Guanylate kinase, GMP k 97.5 0.00042 1.4E-08 62.8 10.3 24 221-244 1-24 (186)
110 1ex7_A Guanylate kinase; subst 97.5 0.00042 1.4E-08 64.5 10.5 23 222-244 2-24 (186)
111 3cr8_A Sulfate adenylyltranfer 97.3 0.001 3.4E-08 71.7 11.9 28 219-247 367-394 (552)
112 2axn_A 6-phosphofructo-2-kinas 97.3 0.0018 6.1E-08 69.0 13.1 30 220-250 34-63 (520)
113 1pzn_A RAD51, DNA repair and r 97.3 0.00026 8.8E-09 71.6 5.9 103 134-244 35-154 (349)
114 2j41_A Guanylate kinase; GMP, 97.1 0.00025 8.6E-09 64.1 3.9 26 219-244 4-29 (207)
115 1uf9_A TT1252 protein; P-loop, 97.0 0.00037 1.3E-08 62.8 3.8 27 218-244 5-31 (203)
116 1zp6_A Hypothetical protein AT 96.8 0.00063 2.2E-08 60.9 3.6 27 218-244 6-32 (191)
117 1kgd_A CASK, peripheral plasma 96.7 0.0011 3.6E-08 59.9 3.9 26 219-244 3-28 (180)
118 2jeo_A Uridine-cytidine kinase 96.7 0.0011 3.8E-08 62.7 4.1 29 218-247 22-50 (245)
119 1bif_A 6-phosphofructo-2-kinas 96.5 0.038 1.3E-06 57.5 14.6 30 219-249 37-66 (469)
120 3ney_A 55 kDa erythrocyte memb 96.4 0.0019 6.5E-08 60.8 4.1 28 217-244 15-42 (197)
121 1rz3_A Hypothetical protein rb 96.4 0.0021 7.2E-08 59.0 4.2 26 219-244 20-45 (201)
122 1odf_A YGR205W, hypothetical 3 96.4 0.0023 8E-08 63.2 4.7 28 219-247 29-56 (290)
123 3b9q_A Chloroplast SRP recepto 96.4 0.0066 2.2E-07 60.3 7.8 28 217-244 96-123 (302)
124 2yhs_A FTSY, cell division pro 96.4 0.006 2E-07 65.1 7.9 51 194-244 266-316 (503)
125 2ze6_A Isopentenyl transferase 96.3 0.0025 8.5E-08 61.1 3.9 26 222-248 2-27 (253)
126 3lnc_A Guanylate kinase, GMP k 96.2 0.0017 5.7E-08 60.6 2.4 27 218-244 24-51 (231)
127 2og2_A Putative signal recogni 96.0 0.012 4.2E-07 60.0 8.0 28 217-244 153-180 (359)
128 2i1q_A DNA repair and recombin 96.0 0.0021 7.2E-08 63.3 2.1 103 134-244 3-121 (322)
129 2fmp_A DNA polymerase beta; nu 96.0 0.0022 7.5E-08 65.0 2.1 73 132-205 96-168 (335)
130 1lvg_A Guanylate kinase, GMP k 95.9 0.0035 1.2E-07 57.6 3.1 25 220-244 3-27 (198)
131 1ye8_A Protein THEP1, hypothet 95.8 0.0048 1.6E-07 56.4 3.5 25 222-247 1-25 (178)
132 3aez_A Pantothenate kinase; tr 95.8 0.0062 2.1E-07 60.7 4.6 28 217-244 86-113 (312)
133 3tqc_A Pantothenate kinase; bi 95.8 0.0058 2E-07 61.5 4.4 29 218-247 89-117 (321)
134 1z6g_A Guanylate kinase; struc 95.8 0.005 1.7E-07 57.5 3.3 27 218-244 20-46 (218)
135 1rj9_A FTSY, signal recognitio 95.7 0.014 4.8E-07 57.9 6.6 27 218-244 99-125 (304)
136 1s96_A Guanylate kinase, GMP k 95.7 0.0061 2.1E-07 57.6 3.8 26 219-244 14-39 (219)
137 1znw_A Guanylate kinase, GMP k 95.7 0.0064 2.2E-07 55.9 3.8 28 217-244 16-43 (207)
138 1htw_A HI0065; nucleotide-bind 95.7 0.0072 2.5E-07 54.4 4.0 26 219-244 31-56 (158)
139 1vma_A Cell division protein F 95.7 0.028 9.7E-07 55.9 8.5 48 195-244 79-127 (306)
140 1g8f_A Sulfate adenylyltransfe 95.6 0.0081 2.8E-07 64.2 4.7 29 219-248 393-421 (511)
141 3exa_A TRNA delta(2)-isopenten 95.6 0.0066 2.3E-07 61.4 3.8 28 219-247 1-28 (322)
142 4gp7_A Metallophosphoesterase; 95.5 0.007 2.4E-07 54.2 3.3 24 219-242 7-30 (171)
143 2bcq_A DNA polymerase lambda; 95.4 0.0071 2.4E-07 61.3 3.2 68 134-204 95-164 (335)
144 2ehv_A Hypothetical protein PH 95.3 0.0099 3.4E-07 54.9 3.6 25 219-243 28-52 (251)
145 1lw7_A Transcriptional regulat 95.3 0.0094 3.2E-07 59.9 3.7 24 221-244 170-193 (365)
146 3lda_A DNA repair protein RAD5 95.3 0.013 4.6E-07 60.5 4.8 25 219-243 176-200 (400)
147 3kl4_A SRP54, signal recogniti 95.3 0.067 2.3E-06 56.0 10.1 51 197-248 73-123 (433)
148 3ec2_A DNA replication protein 95.2 0.0095 3.3E-07 53.1 3.1 25 220-244 37-61 (180)
149 3a8t_A Adenylate isopentenyltr 95.2 0.01 3.4E-07 60.4 3.5 27 220-247 39-65 (339)
150 3d3q_A TRNA delta(2)-isopenten 95.2 0.012 4.1E-07 59.8 4.0 25 222-247 8-32 (340)
151 4a74_A DNA repair and recombin 95.1 0.012 4E-07 53.7 3.5 26 219-244 23-48 (231)
152 3crm_A TRNA delta(2)-isopenten 95.1 0.013 4.5E-07 59.1 4.0 26 221-247 5-30 (323)
153 1v5w_A DMC1, meiotic recombina 95.0 0.015 5E-07 58.4 4.2 102 135-244 26-145 (343)
154 2z43_A DNA repair and recombin 95.0 0.0053 1.8E-07 60.9 0.7 106 131-244 9-130 (324)
155 3tif_A Uncharacterized ABC tra 94.9 0.012 4.2E-07 56.0 3.1 26 218-243 28-53 (235)
156 2pcj_A ABC transporter, lipopr 94.9 0.012 4.3E-07 55.4 3.0 25 219-243 28-52 (224)
157 2px0_A Flagellar biosynthesis 94.9 0.049 1.7E-06 53.7 7.4 28 219-247 103-130 (296)
158 1dek_A Deoxynucleoside monopho 94.9 0.014 4.8E-07 56.4 3.3 26 222-248 2-27 (241)
159 1zu4_A FTSY; GTPase, signal re 94.9 0.069 2.3E-06 53.3 8.5 30 217-247 101-130 (320)
160 2cbz_A Multidrug resistance-as 94.9 0.013 4.5E-07 55.8 3.1 27 218-244 28-54 (237)
161 2pze_A Cystic fibrosis transme 94.8 0.014 4.6E-07 55.4 3.1 26 219-244 32-57 (229)
162 2d2e_A SUFC protein; ABC-ATPas 94.7 0.017 5.9E-07 55.4 3.6 25 219-243 27-51 (250)
163 1jms_A Terminal deoxynucleotid 94.7 0.018 6E-07 59.4 3.8 71 132-205 119-192 (381)
164 2ff7_A Alpha-hemolysin translo 94.7 0.015 5.2E-07 55.8 3.1 26 218-243 32-57 (247)
165 1mv5_A LMRA, multidrug resista 94.6 0.016 5.5E-07 55.3 3.1 27 218-244 25-51 (243)
166 1ji0_A ABC transporter; ATP bi 94.6 0.016 5.5E-07 55.2 3.1 26 219-244 30-55 (240)
167 2eyu_A Twitching motility prot 94.6 0.02 7E-07 55.4 3.8 26 219-244 23-48 (261)
168 1jbk_A CLPB protein; beta barr 94.6 0.024 8.1E-07 49.1 3.9 24 221-244 43-66 (195)
169 3foz_A TRNA delta(2)-isopenten 94.6 0.023 7.9E-07 57.3 4.2 27 220-247 9-35 (316)
170 2zu0_C Probable ATP-dependent 94.5 0.02 7E-07 55.5 3.6 26 218-243 43-68 (267)
171 2ihm_A POL MU, DNA polymerase 94.5 0.0091 3.1E-07 61.0 1.1 72 132-204 100-171 (360)
172 2ghi_A Transport protein; mult 94.5 0.018 6.1E-07 55.7 3.1 27 218-244 43-69 (260)
173 2w0m_A SSO2452; RECA, SSPF, un 94.5 0.023 7.7E-07 51.5 3.6 26 219-244 21-46 (235)
174 1g6h_A High-affinity branched- 94.5 0.018 6.2E-07 55.4 3.1 26 219-244 31-56 (257)
175 1sgw_A Putative ABC transporte 94.5 0.016 5.4E-07 54.7 2.6 25 219-243 33-57 (214)
176 2ixe_A Antigen peptide transpo 94.5 0.018 6.3E-07 56.0 3.1 27 218-244 42-68 (271)
177 1vpl_A ABC transporter, ATP-bi 94.4 0.019 6.5E-07 55.6 3.1 27 218-244 38-64 (256)
178 1b0u_A Histidine permease; ABC 94.4 0.019 6.5E-07 55.6 3.1 27 218-244 29-55 (262)
179 2v9p_A Replication protein E1; 94.4 0.025 8.6E-07 56.5 4.0 27 218-244 123-149 (305)
180 3gfo_A Cobalt import ATP-bindi 94.4 0.019 6.5E-07 56.3 3.1 27 218-244 31-57 (275)
181 4g1u_C Hemin import ATP-bindin 94.4 0.019 6.6E-07 55.8 3.1 26 219-244 35-60 (266)
182 2i3b_A HCR-ntpase, human cance 94.3 0.022 7.6E-07 52.6 3.2 23 222-244 2-24 (189)
183 2qi9_C Vitamin B12 import ATP- 94.3 0.02 7E-07 55.1 3.1 26 219-244 24-49 (249)
184 2yz2_A Putative ABC transporte 94.3 0.022 7.6E-07 55.1 3.2 27 218-244 30-56 (266)
185 2olj_A Amino acid ABC transpor 94.3 0.021 7.2E-07 55.5 3.1 27 218-244 47-73 (263)
186 3bos_A Putative DNA replicatio 94.3 0.029 1E-06 50.9 3.9 27 220-247 51-77 (242)
187 2nq2_C Hypothetical ABC transp 94.2 0.022 7.5E-07 54.9 3.1 26 219-244 29-54 (253)
188 2wjg_A FEOB, ferrous iron tran 94.2 0.029 1E-06 49.2 3.6 26 218-243 4-29 (188)
189 2ihy_A ABC transporter, ATP-bi 94.2 0.023 7.8E-07 55.7 3.1 26 219-244 45-70 (279)
190 3b85_A Phosphate starvation-in 94.2 0.019 6.6E-07 53.8 2.4 24 220-243 21-44 (208)
191 2cvh_A DNA repair and recombin 94.1 0.03 1E-06 50.7 3.6 25 219-243 18-42 (220)
192 3t15_A Ribulose bisphosphate c 94.1 0.039 1.3E-06 53.8 4.6 31 219-250 34-64 (293)
193 2onk_A Molybdate/tungstate ABC 94.1 0.026 8.9E-07 54.0 3.3 25 219-244 23-47 (240)
194 2p65_A Hypothetical protein PF 94.0 0.031 1.1E-06 48.5 3.4 24 221-244 43-66 (187)
195 1xjc_A MOBB protein homolog; s 94.0 0.03 1E-06 51.4 3.4 28 221-249 4-31 (169)
196 1njg_A DNA polymerase III subu 94.0 0.035 1.2E-06 49.6 3.8 26 222-248 46-71 (250)
197 2orw_A Thymidine kinase; TMTK, 94.0 0.036 1.2E-06 50.7 3.9 26 219-244 1-26 (184)
198 2ce2_X GTPase HRAS; signaling 94.0 0.033 1.1E-06 46.9 3.4 25 220-244 2-26 (166)
199 1kao_A RAP2A; GTP-binding prot 94.0 0.034 1.2E-06 47.1 3.4 26 219-244 1-26 (167)
200 2wji_A Ferrous iron transport 94.0 0.032 1.1E-06 48.6 3.3 25 219-243 1-25 (165)
201 3e70_C DPA, signal recognition 94.0 0.033 1.1E-06 56.0 3.8 27 218-244 126-152 (328)
202 2kjq_A DNAA-related protein; s 93.9 0.025 8.5E-07 50.0 2.6 25 220-244 35-59 (149)
203 1n0w_A DNA repair protein RAD5 93.9 0.034 1.2E-06 51.1 3.6 26 219-244 22-47 (243)
204 2bbs_A Cystic fibrosis transme 93.9 0.027 9.2E-07 55.6 3.1 27 218-244 61-87 (290)
205 2f1r_A Molybdopterin-guanine d 93.8 0.025 8.7E-07 51.5 2.5 23 222-244 3-25 (171)
206 3con_A GTPase NRAS; structural 93.8 0.032 1.1E-06 49.2 2.9 28 217-244 17-44 (190)
207 2qz4_A Paraplegin; AAA+, SPG7, 93.7 0.069 2.4E-06 49.7 5.2 28 221-249 39-66 (262)
208 3h4m_A Proteasome-activating n 93.7 0.056 1.9E-06 51.3 4.7 28 221-249 51-78 (285)
209 3dm5_A SRP54, signal recogniti 93.6 0.12 4E-06 54.4 7.4 31 219-250 98-128 (443)
210 2x8a_A Nuclear valosin-contain 93.6 0.038 1.3E-06 53.6 3.5 24 224-248 47-70 (274)
211 1lv7_A FTSH; alpha/beta domain 93.6 0.039 1.3E-06 51.9 3.4 25 223-248 47-71 (257)
212 2gza_A Type IV secretion syste 93.6 0.033 1.1E-06 56.3 3.2 26 219-244 173-198 (361)
213 1c1y_A RAS-related protein RAP 93.6 0.045 1.5E-06 46.6 3.5 26 219-244 1-26 (167)
214 1np6_A Molybdopterin-guanine d 93.5 0.05 1.7E-06 49.8 3.9 24 221-244 6-29 (174)
215 3fvq_A Fe(3+) IONS import ATP- 93.5 0.04 1.4E-06 56.3 3.6 27 218-244 27-53 (359)
216 1in4_A RUVB, holliday junction 93.5 0.041 1.4E-06 54.5 3.6 26 222-248 52-77 (334)
217 1u8z_A RAS-related protein RAL 93.5 0.046 1.6E-06 46.3 3.5 26 219-244 2-27 (168)
218 1ixz_A ATP-dependent metallopr 93.5 0.04 1.4E-06 51.7 3.3 23 224-247 52-74 (254)
219 1cr0_A DNA primase/helicase; R 93.5 0.043 1.5E-06 52.9 3.6 27 218-244 32-58 (296)
220 2pjz_A Hypothetical protein ST 93.5 0.035 1.2E-06 54.0 3.0 24 221-244 30-53 (263)
221 3te6_A Regulatory protein SIR3 93.5 0.041 1.4E-06 55.3 3.4 49 185-247 21-70 (318)
222 3nh6_A ATP-binding cassette SU 93.4 0.032 1.1E-06 55.6 2.6 27 218-244 77-103 (306)
223 1pui_A ENGB, probable GTP-bind 93.4 0.03 1E-06 50.3 2.1 26 218-243 23-48 (210)
224 3b9p_A CG5977-PA, isoform A; A 93.4 0.067 2.3E-06 51.2 4.8 27 221-248 54-80 (297)
225 2w58_A DNAI, primosome compone 93.3 0.053 1.8E-06 48.8 3.8 23 222-244 55-77 (202)
226 1z47_A CYSA, putative ABC-tran 93.3 0.045 1.5E-06 55.8 3.6 27 218-244 38-64 (355)
227 3lxx_A GTPase IMAP family memb 93.3 0.042 1.4E-06 51.2 3.1 28 217-244 25-52 (239)
228 2yyz_A Sugar ABC transporter, 93.3 0.048 1.6E-06 55.6 3.7 26 219-244 27-52 (359)
229 1z00_B DNA repair endonuclease 93.3 0.021 7.3E-07 46.9 0.9 31 134-165 18-48 (84)
230 2chg_A Replication factor C sm 93.3 0.049 1.7E-06 48.2 3.3 21 224-244 41-61 (226)
231 2it1_A 362AA long hypothetical 93.2 0.049 1.7E-06 55.6 3.7 26 219-244 27-52 (362)
232 3eph_A TRNA isopentenyltransfe 93.2 0.051 1.8E-06 56.6 3.9 27 221-248 2-28 (409)
233 1v43_A Sugar-binding transport 93.2 0.048 1.6E-06 55.9 3.6 26 219-244 35-60 (372)
234 1p9r_A General secretion pathw 93.2 0.083 2.9E-06 54.8 5.4 40 219-259 165-205 (418)
235 2fn4_A P23, RAS-related protei 93.2 0.058 2E-06 46.5 3.6 27 218-244 6-32 (181)
236 1g29_1 MALK, maltose transport 93.2 0.049 1.7E-06 55.7 3.6 26 219-244 27-52 (372)
237 3rlf_A Maltose/maltodextrin im 93.2 0.051 1.8E-06 55.9 3.7 27 218-244 26-52 (381)
238 3d31_A Sulfate/molybdate ABC t 93.1 0.042 1.4E-06 55.8 3.0 26 219-244 24-49 (348)
239 3cf0_A Transitional endoplasmi 93.1 0.06 2.1E-06 52.4 4.0 28 220-248 48-75 (301)
240 2ewv_A Twitching motility prot 93.1 0.052 1.8E-06 55.2 3.7 26 219-244 134-159 (372)
241 1oix_A RAS-related protein RAB 93.0 0.057 1.9E-06 48.4 3.4 24 221-244 29-52 (191)
242 1oxx_K GLCV, glucose, ABC tran 93.0 0.04 1.4E-06 55.9 2.6 26 219-244 29-54 (353)
243 2a1j_A DNA repair endonuclease 93.0 0.02 7E-07 44.2 0.3 28 136-164 6-33 (63)
244 1xwi_A SKD1 protein; VPS4B, AA 92.9 0.16 5.3E-06 50.3 6.7 25 221-246 45-69 (322)
245 3sop_A Neuronal-specific septi 92.9 0.054 1.8E-06 52.7 3.2 23 222-244 3-25 (270)
246 3syl_A Protein CBBX; photosynt 92.8 0.076 2.6E-06 50.9 4.2 28 219-247 65-92 (309)
247 2qm8_A GTPase/ATPase; G protei 92.8 0.066 2.2E-06 53.7 3.8 27 218-244 52-78 (337)
248 3tui_C Methionine import ATP-b 92.8 0.063 2.2E-06 55.0 3.7 26 218-243 51-76 (366)
249 2gj8_A MNME, tRNA modification 92.8 0.065 2.2E-06 47.2 3.4 25 220-244 3-27 (172)
250 2lkc_A Translation initiation 92.8 0.08 2.7E-06 45.7 3.9 26 219-244 6-31 (178)
251 3gd7_A Fusion complex of cysti 92.7 0.061 2.1E-06 55.4 3.6 27 218-244 44-70 (390)
252 3jvv_A Twitching mobility prot 92.7 0.066 2.3E-06 54.3 3.8 25 220-244 122-146 (356)
253 4b4t_L 26S protease subunit RP 92.7 0.07 2.4E-06 55.9 4.0 29 221-250 215-243 (437)
254 1iy2_A ATP-dependent metallopr 92.7 0.061 2.1E-06 51.4 3.3 23 224-247 76-98 (278)
255 1nlf_A Regulatory protein REPA 92.6 0.068 2.3E-06 51.2 3.6 26 219-244 28-53 (279)
256 2f9l_A RAB11B, member RAS onco 92.6 0.07 2.4E-06 47.8 3.4 23 222-244 6-28 (199)
257 1tq4_A IIGP1, interferon-induc 92.6 0.061 2.1E-06 55.9 3.4 25 219-243 67-91 (413)
258 4b4t_K 26S protease regulatory 92.6 0.074 2.5E-06 55.5 4.0 28 222-250 207-234 (428)
259 4fcw_A Chaperone protein CLPB; 92.6 0.085 2.9E-06 50.5 4.2 24 221-244 47-70 (311)
260 2ged_A SR-beta, signal recogni 92.6 0.1 3.4E-06 46.0 4.3 26 219-244 46-71 (193)
261 2qmh_A HPR kinase/phosphorylas 92.5 0.057 1.9E-06 51.3 2.8 25 220-244 33-57 (205)
262 2wsm_A Hydrogenase expression/ 92.5 0.081 2.8E-06 48.0 3.7 25 220-244 29-53 (221)
263 2npi_A Protein CLP1; CLP1-PCF1 92.5 0.059 2E-06 56.6 3.1 25 220-244 137-161 (460)
264 2hxs_A RAB-26, RAS-related pro 92.5 0.084 2.9E-06 45.6 3.6 26 219-244 4-29 (178)
265 1ofh_A ATP-dependent HSL prote 92.5 0.075 2.6E-06 50.5 3.6 28 221-249 50-77 (310)
266 1upt_A ARL1, ADP-ribosylation 92.4 0.09 3.1E-06 44.9 3.7 25 220-244 6-30 (171)
267 2pt7_A CAG-ALFA; ATPase, prote 92.4 0.047 1.6E-06 54.6 2.2 25 220-244 170-194 (330)
268 1ek0_A Protein (GTP-binding pr 92.4 0.069 2.4E-06 45.4 2.9 24 221-244 3-26 (170)
269 3clv_A RAB5 protein, putative; 92.4 0.1 3.5E-06 45.5 4.1 25 220-244 6-30 (208)
270 3n70_A Transport activator; si 92.4 0.076 2.6E-06 46.0 3.2 23 222-244 25-47 (145)
271 1z2a_A RAS-related protein RAB 92.4 0.08 2.7E-06 45.0 3.3 25 220-244 4-28 (168)
272 2p5s_A RAS and EF-hand domain 92.3 0.083 2.8E-06 47.3 3.5 27 218-244 25-51 (199)
273 1svi_A GTP-binding protein YSX 92.3 0.096 3.3E-06 46.1 3.9 26 219-244 21-46 (195)
274 3k53_A Ferrous iron transport 92.3 0.08 2.7E-06 50.6 3.6 26 219-244 1-26 (271)
275 3ihw_A Centg3; RAS, centaurin, 92.3 0.091 3.1E-06 46.8 3.7 28 217-244 16-43 (184)
276 2dyk_A GTP-binding protein; GT 92.3 0.085 2.9E-06 44.6 3.4 23 222-244 2-24 (161)
277 2dr3_A UPF0273 protein PH0284; 92.3 0.085 2.9E-06 48.4 3.6 26 219-244 21-46 (247)
278 2ga8_A Hypothetical 39.9 kDa p 92.2 0.087 3E-06 54.0 3.9 28 220-248 23-50 (359)
279 1mh1_A RAC1; GTP-binding, GTPa 92.2 0.083 2.8E-06 45.8 3.2 26 219-244 3-28 (186)
280 2www_A Methylmalonic aciduria 92.2 0.09 3.1E-06 52.9 3.9 26 219-244 72-97 (349)
281 2a9k_A RAS-related protein RAL 92.2 0.085 2.9E-06 45.7 3.3 27 218-244 15-41 (187)
282 2nzj_A GTP-binding protein REM 92.2 0.085 2.9E-06 45.3 3.3 25 220-244 3-27 (175)
283 3pqc_A Probable GTP-binding pr 92.2 0.099 3.4E-06 45.7 3.8 26 219-244 21-46 (195)
284 3kta_A Chromosome segregation 92.2 0.083 2.8E-06 46.8 3.2 22 223-244 28-49 (182)
285 2erx_A GTP-binding protein DI- 92.2 0.083 2.8E-06 45.0 3.1 24 221-244 3-26 (172)
286 2qby_B CDC6 homolog 3, cell di 92.1 0.094 3.2E-06 51.5 3.9 25 220-244 44-68 (384)
287 3uk6_A RUVB-like 2; hexameric 92.1 0.093 3.2E-06 51.6 3.9 27 221-248 70-96 (368)
288 2yv5_A YJEQ protein; hydrolase 92.0 0.088 3E-06 51.8 3.6 24 220-244 164-187 (302)
289 2zej_A Dardarin, leucine-rich 92.0 0.084 2.9E-06 46.7 3.1 22 222-243 3-24 (184)
290 1nij_A Hypothetical protein YJ 92.0 0.068 2.3E-06 52.9 2.7 24 221-244 4-27 (318)
291 1ky3_A GTP-binding protein YPT 91.9 0.094 3.2E-06 45.2 3.3 25 220-244 7-31 (182)
292 2bov_A RAla, RAS-related prote 91.9 0.1 3.5E-06 46.2 3.6 28 217-244 10-37 (206)
293 2hf9_A Probable hydrogenase ni 91.9 0.11 3.8E-06 47.3 3.9 25 220-244 37-61 (226)
294 4b4t_M 26S protease regulatory 91.9 0.097 3.3E-06 54.8 3.9 29 221-250 215-243 (434)
295 1d2n_A N-ethylmaleimide-sensit 91.9 0.1 3.5E-06 49.5 3.7 29 220-249 63-91 (272)
296 1wms_A RAB-9, RAB9, RAS-relate 91.9 0.084 2.9E-06 45.5 2.9 25 220-244 6-30 (177)
297 2y8e_A RAB-protein 6, GH09086P 91.8 0.086 3E-06 45.3 2.9 26 219-244 12-37 (179)
298 4b4t_J 26S protease regulatory 91.8 0.1 3.5E-06 54.3 3.9 27 223-250 184-210 (405)
299 3ozx_A RNAse L inhibitor; ATP 91.8 0.089 3E-06 56.3 3.6 29 216-244 20-48 (538)
300 3t5g_A GTP-binding protein RHE 91.8 0.077 2.6E-06 46.2 2.6 26 219-244 4-29 (181)
301 3q72_A GTP-binding protein RAD 91.8 0.11 3.7E-06 44.3 3.4 22 222-243 3-24 (166)
302 3hws_A ATP-dependent CLP prote 91.8 0.1 3.6E-06 51.8 3.8 29 220-249 50-78 (363)
303 2oap_1 GSPE-2, type II secreti 91.7 0.11 3.8E-06 55.2 4.2 25 220-244 259-283 (511)
304 2qby_A CDC6 homolog 1, cell di 91.7 0.1 3.4E-06 50.8 3.6 25 220-244 44-68 (386)
305 1nrj_B SR-beta, signal recogni 91.7 0.12 4.2E-06 46.6 3.9 26 219-244 10-35 (218)
306 3oes_A GTPase rhebl1; small GT 91.7 0.1 3.5E-06 46.7 3.3 28 217-244 20-47 (201)
307 3kkq_A RAS-related protein M-R 91.7 0.12 4.2E-06 44.9 3.8 27 218-244 15-41 (183)
308 2r62_A Cell division protease 91.6 0.061 2.1E-06 50.7 1.8 25 224-249 47-71 (268)
309 2j1l_A RHO-related GTP-binding 91.6 0.1 3.4E-06 47.6 3.3 26 219-244 32-57 (214)
310 1l8q_A Chromosomal replication 91.6 0.095 3.2E-06 51.0 3.3 25 220-244 36-60 (324)
311 3eie_A Vacuolar protein sortin 91.6 0.22 7.7E-06 48.7 5.9 28 221-249 51-78 (322)
312 1zj6_A ADP-ribosylation factor 91.5 0.13 4.3E-06 45.4 3.7 25 219-243 14-38 (187)
313 2gf0_A GTP-binding protein DI- 91.5 0.14 4.7E-06 45.2 3.9 26 219-244 6-31 (199)
314 4dsu_A GTPase KRAS, isoform 2B 91.5 0.098 3.3E-06 45.5 2.9 25 220-244 3-27 (189)
315 1moz_A ARL1, ADP-ribosylation 91.5 0.084 2.9E-06 45.9 2.5 25 219-243 16-40 (183)
316 2j37_W Signal recognition part 91.5 0.22 7.4E-06 53.1 6.1 28 219-247 99-126 (504)
317 1z06_A RAS-related protein RAB 91.5 0.11 3.8E-06 45.8 3.3 28 217-244 16-43 (189)
318 3i8s_A Ferrous iron transport 91.4 0.11 3.7E-06 50.1 3.5 26 219-244 1-26 (274)
319 2xxa_A Signal recognition part 91.4 0.26 8.8E-06 51.3 6.5 54 195-249 74-127 (433)
320 1r2q_A RAS-related protein RAB 91.4 0.08 2.7E-06 45.0 2.2 25 220-244 5-29 (170)
321 2fg5_A RAB-22B, RAS-related pr 91.4 0.1 3.4E-06 46.4 2.9 26 219-244 21-46 (192)
322 2rcn_A Probable GTPase ENGC; Y 91.3 0.11 3.8E-06 53.0 3.6 25 220-244 214-238 (358)
323 2iwr_A Centaurin gamma 1; ANK 91.3 0.11 3.9E-06 44.9 3.2 26 219-244 5-30 (178)
324 3p32_A Probable GTPase RV1496/ 91.3 0.13 4.6E-06 51.4 4.1 26 219-244 77-102 (355)
325 2h17_A ADP-ribosylation factor 91.3 0.1 3.6E-06 45.7 3.0 28 217-244 17-44 (181)
326 1xx6_A Thymidine kinase; NESG, 91.3 0.22 7.5E-06 46.2 5.2 27 218-244 5-31 (191)
327 1um8_A ATP-dependent CLP prote 91.3 0.12 4E-06 51.6 3.7 28 221-249 72-99 (376)
328 2efe_B Small GTP-binding prote 91.3 0.11 3.7E-06 45.0 2.9 26 219-244 10-35 (181)
329 1sxj_D Activator 1 41 kDa subu 91.3 0.11 3.8E-06 50.4 3.3 21 224-244 61-81 (353)
330 1z08_A RAS-related protein RAB 91.3 0.12 4.1E-06 44.1 3.2 25 220-244 5-29 (170)
331 3b5x_A Lipid A export ATP-bind 91.2 0.11 3.8E-06 55.6 3.5 27 218-244 366-392 (582)
332 3bwd_D RAC-like GTP-binding pr 91.2 0.15 5.1E-06 44.1 3.8 26 219-244 6-31 (182)
333 1g16_A RAS-related protein SEC 91.2 0.12 4.2E-06 43.9 3.2 23 222-244 4-26 (170)
334 3d8b_A Fidgetin-like protein 1 91.2 0.17 5.7E-06 50.6 4.6 28 220-248 116-143 (357)
335 4bas_A ADP-ribosylation factor 91.2 0.11 3.8E-06 45.7 3.0 28 217-244 13-40 (199)
336 3b60_A Lipid A export ATP-bind 91.2 0.1 3.5E-06 55.9 3.2 27 218-244 366-392 (582)
337 1yrb_A ATP(GTP)binding protein 91.2 0.17 5.7E-06 47.3 4.3 29 218-247 11-39 (262)
338 1sxj_C Activator 1 40 kDa subu 91.1 0.12 4.1E-06 50.9 3.5 21 224-244 49-69 (340)
339 2atv_A RERG, RAS-like estrogen 91.1 0.14 4.8E-06 45.5 3.7 26 219-244 26-51 (196)
340 1z0j_A RAB-22, RAS-related pro 91.1 0.13 4.3E-06 43.9 3.2 25 220-244 5-29 (170)
341 1yqt_A RNAse L inhibitor; ATP- 91.1 0.13 4.5E-06 54.8 4.0 27 218-244 44-70 (538)
342 3m6a_A ATP-dependent protease 91.1 0.13 4.5E-06 54.7 4.0 27 220-247 107-133 (543)
343 1ksh_A ARF-like protein 2; sma 91.0 0.13 4.6E-06 44.9 3.4 26 219-244 16-41 (186)
344 3bc1_A RAS-related protein RAB 91.0 0.13 4.6E-06 44.6 3.3 25 220-244 10-34 (195)
345 1m2o_B GTP-binding protein SAR 91.0 0.14 4.7E-06 45.7 3.5 25 220-244 22-46 (190)
346 3q85_A GTP-binding protein REM 91.0 0.13 4.4E-06 44.0 3.1 22 222-243 3-24 (169)
347 3th5_A RAS-related C3 botulinu 90.3 0.043 1.5E-06 49.3 0.0 26 219-244 28-53 (204)
348 1sxj_E Activator 1 40 kDa subu 90.9 0.12 4.1E-06 50.5 3.2 21 224-244 39-59 (354)
349 2b8t_A Thymidine kinase; deoxy 90.9 0.15 5.2E-06 48.5 3.8 27 218-244 9-35 (223)
350 1u0l_A Probable GTPase ENGC; p 90.9 0.13 4.4E-06 50.4 3.4 25 220-244 168-192 (301)
351 2b6h_A ADP-ribosylation factor 90.8 0.15 5.1E-06 45.6 3.5 25 219-243 27-51 (192)
352 1fnn_A CDC6P, cell division co 90.8 0.15 5.2E-06 49.9 3.9 25 222-247 45-69 (389)
353 1fzq_A ADP-ribosylation factor 90.8 0.15 5.2E-06 45.0 3.5 25 219-243 14-38 (181)
354 3pfi_A Holliday junction ATP-d 90.8 0.17 5.9E-06 49.2 4.2 27 222-249 56-82 (338)
355 4dhe_A Probable GTP-binding pr 90.8 0.12 4.1E-06 46.7 2.9 26 219-244 27-52 (223)
356 4b4t_H 26S protease regulatory 90.8 0.13 4.4E-06 54.4 3.5 29 221-250 243-271 (467)
357 3tw8_B RAS-related protein RAB 90.8 0.13 4.3E-06 44.3 2.9 24 220-243 8-31 (181)
358 1z0f_A RAB14, member RAS oncog 90.8 0.14 4.9E-06 43.9 3.2 25 220-244 14-38 (179)
359 1m7b_A RND3/RHOE small GTP-bin 90.7 0.15 5E-06 44.9 3.3 25 220-244 6-30 (184)
360 1tue_A Replication protein E1; 90.7 0.15 5E-06 48.8 3.4 25 222-247 59-83 (212)
361 1zd9_A ADP-ribosylation factor 90.7 0.14 4.7E-06 45.3 3.1 26 219-244 20-45 (188)
362 2xtp_A GTPase IMAP family memb 90.7 0.14 4.8E-06 48.1 3.3 28 217-244 18-45 (260)
363 4b4t_I 26S protease regulatory 90.7 0.15 5.2E-06 53.5 3.9 29 221-250 216-244 (437)
364 1yqt_A RNAse L inhibitor; ATP- 90.7 0.14 4.7E-06 54.7 3.6 26 219-244 310-335 (538)
365 3j16_B RLI1P; ribosome recycli 90.6 0.16 5.3E-06 55.3 4.0 27 218-244 100-126 (608)
366 1vg8_A RAS-related protein RAB 90.6 0.15 5.2E-06 45.3 3.3 26 219-244 6-31 (207)
367 2oil_A CATX-8, RAS-related pro 90.6 0.15 5.3E-06 44.9 3.3 26 219-244 23-48 (193)
368 3c5c_A RAS-like protein 12; GD 90.6 0.15 5.2E-06 45.2 3.3 27 218-244 18-44 (187)
369 1iqp_A RFCS; clamp loader, ext 90.6 0.18 6.1E-06 48.1 4.0 22 223-244 48-69 (327)
370 2v1u_A Cell division control p 90.5 0.14 4.7E-06 49.9 3.2 25 220-244 43-67 (387)
371 1jr3_A DNA polymerase III subu 90.5 0.17 5.8E-06 49.5 3.9 27 221-248 38-64 (373)
372 2qag_B Septin-6, protein NEDD5 90.5 0.13 4.5E-06 53.7 3.2 26 219-244 38-65 (427)
373 2fh5_B SR-beta, signal recogni 90.5 0.17 5.7E-06 45.5 3.5 26 219-244 5-30 (214)
374 2cxx_A Probable GTP-binding pr 90.4 0.16 5.4E-06 44.3 3.2 22 223-244 3-24 (190)
375 1f6b_A SAR1; gtpases, N-termin 90.4 0.15 5.2E-06 45.9 3.2 25 219-243 23-47 (198)
376 1c9k_A COBU, adenosylcobinamid 90.4 0.13 4.5E-06 47.6 2.8 22 223-244 1-22 (180)
377 1r8s_A ADP-ribosylation factor 90.4 0.18 6.2E-06 42.8 3.5 22 223-244 2-23 (164)
378 2g6b_A RAS-related protein RAB 90.4 0.14 4.9E-06 44.2 2.9 26 219-244 8-33 (180)
379 1t9h_A YLOQ, probable GTPase E 90.4 0.087 3E-06 52.6 1.7 25 220-244 172-196 (307)
380 2p67_A LAO/AO transport system 90.4 0.17 5.8E-06 50.5 3.8 26 219-244 54-79 (341)
381 2r44_A Uncharacterized protein 90.4 0.13 4.5E-06 50.1 2.9 26 223-249 48-73 (331)
382 4gzl_A RAS-related C3 botulinu 90.3 0.17 6E-06 45.6 3.5 28 217-244 26-53 (204)
383 2r2a_A Uncharacterized protein 90.3 0.19 6.4E-06 46.9 3.7 24 220-243 4-27 (199)
384 1sxj_A Activator 1 95 kDa subu 90.3 0.35 1.2E-05 50.8 6.3 28 220-248 76-103 (516)
385 3bk7_A ABC transporter ATP-bin 90.2 0.15 5.2E-06 55.3 3.6 25 220-244 381-405 (607)
386 2c9o_A RUVB-like 1; hexameric 90.2 0.21 7E-06 51.7 4.4 26 221-247 63-88 (456)
387 3ozx_A RNAse L inhibitor; ATP 90.2 0.13 4.6E-06 54.9 3.1 26 219-244 292-317 (538)
388 3cf2_A TER ATPase, transitiona 90.2 0.19 6.5E-06 56.5 4.4 29 220-249 237-265 (806)
389 2bme_A RAB4A, RAS-related prot 90.2 0.17 5.8E-06 44.1 3.2 25 220-244 9-33 (186)
390 2h57_A ADP-ribosylation factor 90.2 0.14 4.7E-06 45.2 2.6 27 218-244 18-44 (190)
391 2obl_A ESCN; ATPase, hydrolase 90.2 0.18 6E-06 51.0 3.7 26 219-244 69-94 (347)
392 2qp9_X Vacuolar protein sortin 90.1 0.17 5.8E-06 50.7 3.6 27 222-249 85-111 (355)
393 1g41_A Heat shock protein HSLU 90.1 0.18 6.1E-06 53.0 3.8 28 221-249 50-77 (444)
394 3tkl_A RAS-related protein RAB 90.1 0.18 6.2E-06 44.2 3.3 25 220-244 15-39 (196)
395 3reg_A RHO-like small GTPase; 90.1 0.16 5.4E-06 45.0 2.9 27 218-244 20-46 (194)
396 2j9r_A Thymidine kinase; TK1, 90.0 0.42 1.4E-05 45.5 6.0 27 218-244 25-51 (214)
397 3t1o_A Gliding protein MGLA; G 90.0 0.18 6.1E-06 44.0 3.2 25 220-244 13-37 (198)
398 2bjv_A PSP operon transcriptio 90.0 0.16 5.6E-06 47.8 3.2 23 222-244 30-52 (265)
399 2fv8_A H6, RHO-related GTP-bin 90.0 0.15 5.3E-06 45.8 2.8 26 219-244 23-48 (207)
400 3bqs_A Uncharacterized protein 89.9 0.15 5.2E-06 42.6 2.5 33 134-166 4-36 (93)
401 2a5j_A RAS-related protein RAB 89.9 0.21 7.2E-06 44.1 3.6 26 219-244 19-44 (191)
402 2yl4_A ATP-binding cassette SU 89.9 0.11 3.7E-06 55.8 2.0 27 218-244 367-393 (595)
403 3cbq_A GTP-binding protein REM 89.9 0.14 4.8E-06 46.1 2.5 25 219-243 21-45 (195)
404 2dpy_A FLII, flagellum-specifi 89.8 0.2 6.7E-06 52.2 3.9 27 218-244 154-180 (438)
405 1ls1_A Signal recognition part 89.7 0.19 6.5E-06 49.3 3.5 25 220-244 97-121 (295)
406 2v3c_C SRP54, signal recogniti 89.7 0.28 9.5E-06 51.1 4.9 26 219-244 97-122 (432)
407 3ch4_B Pmkase, phosphomevalona 89.6 0.24 8.1E-06 46.8 3.9 28 220-248 10-37 (202)
408 3bk7_A ABC transporter ATP-bin 89.5 0.19 6.3E-06 54.6 3.5 27 218-244 114-140 (607)
409 3mab_A Uncharacterized protein 89.5 0.18 6.2E-06 42.2 2.7 31 134-164 4-34 (93)
410 2x77_A ADP-ribosylation factor 89.5 0.16 5.5E-06 44.6 2.5 25 219-243 20-44 (189)
411 1x3s_A RAS-related protein RAB 89.5 0.18 6.2E-06 44.1 2.8 26 219-244 13-38 (195)
412 2zts_A Putative uncharacterize 89.5 0.23 7.7E-06 45.5 3.6 24 220-243 29-52 (251)
413 3dz8_A RAS-related protein RAB 89.4 0.22 7.7E-06 44.0 3.4 25 220-244 22-46 (191)
414 2q3h_A RAS homolog gene family 89.4 0.22 7.6E-06 44.2 3.4 26 219-244 18-43 (201)
415 3llu_A RAS-related GTP-binding 89.4 0.21 7.3E-06 44.5 3.3 28 217-244 16-43 (196)
416 2qu8_A Putative nucleolar GTP- 89.3 0.24 8.1E-06 45.5 3.6 26 219-244 27-52 (228)
417 3cph_A RAS-related protein SEC 89.3 0.24 8.1E-06 44.2 3.5 26 219-244 18-43 (213)
418 3q3j_B RHO-related GTP-binding 89.3 0.24 8.1E-06 45.2 3.5 28 217-244 23-50 (214)
419 3co5_A Putative two-component 89.2 0.076 2.6E-06 45.9 0.2 22 223-244 29-50 (143)
420 3llm_A ATP-dependent RNA helic 89.2 0.45 1.5E-05 44.2 5.5 22 221-242 76-97 (235)
421 4a82_A Cystic fibrosis transme 89.2 0.13 4.5E-06 55.0 2.0 27 218-244 364-390 (578)
422 1tf7_A KAIC; homohexamer, hexa 89.2 0.21 7.2E-06 52.7 3.6 23 219-241 37-59 (525)
423 2il1_A RAB12; G-protein, GDP, 89.2 0.2 6.7E-06 44.6 2.9 26 219-244 24-49 (192)
424 1g8p_A Magnesium-chelatase 38 89.1 0.13 4.5E-06 49.9 1.8 23 224-247 48-70 (350)
425 3j16_B RLI1P; ribosome recycli 89.1 0.21 7.2E-06 54.3 3.6 24 221-244 378-401 (608)
426 2j0v_A RAC-like GTP-binding pr 89.1 0.26 9E-06 44.2 3.7 26 219-244 7-32 (212)
427 3qf4_B Uncharacterized ABC tra 89.1 0.16 5.3E-06 54.7 2.5 28 217-244 377-404 (598)
428 2gf9_A RAS-related protein RAB 89.1 0.23 7.8E-06 43.7 3.2 25 220-244 21-45 (189)
429 2chq_A Replication factor C sm 89.1 0.22 7.6E-06 47.3 3.3 21 224-244 41-61 (319)
430 1hqc_A RUVB; extended AAA-ATPa 89.0 0.15 5E-06 49.1 2.1 26 222-248 39-64 (324)
431 3euj_A Chromosome partition pr 89.0 0.2 6.9E-06 53.1 3.3 23 222-244 30-52 (483)
432 2gco_A H9, RHO-related GTP-bin 88.9 0.22 7.7E-06 44.5 3.1 25 220-244 24-48 (201)
433 1gwn_A RHO-related GTP-binding 88.9 0.24 8.2E-06 45.1 3.3 25 220-244 27-51 (205)
434 2fna_A Conserved hypothetical 88.9 0.25 8.4E-06 47.5 3.5 26 222-248 31-56 (357)
435 2hup_A RAS-related protein RAB 88.8 0.23 7.8E-06 44.7 3.0 26 219-244 27-52 (201)
436 1zbd_A Rabphilin-3A; G protein 88.8 0.23 8E-06 44.1 3.1 24 221-244 8-31 (203)
437 3qf4_A ABC transporter, ATP-bi 88.8 0.17 5.9E-06 54.3 2.5 27 218-244 366-392 (587)
438 2qen_A Walker-type ATPase; unk 88.7 0.26 8.9E-06 47.3 3.5 23 222-244 32-54 (350)
439 1ega_A Protein (GTP-binding pr 88.6 0.19 6.6E-06 49.2 2.6 26 219-244 6-31 (301)
440 3pvs_A Replication-associated 88.6 0.24 8.2E-06 51.6 3.5 26 222-248 51-76 (447)
441 1ypw_A Transitional endoplasmi 88.6 0.29 9.9E-06 54.7 4.3 29 220-249 510-538 (806)
442 1f2t_A RAD50 ABC-ATPase; DNA d 88.6 0.27 9.1E-06 43.3 3.3 23 221-243 23-45 (149)
443 1sxj_B Activator 1 37 kDa subu 88.6 0.25 8.6E-06 47.0 3.3 21 224-244 45-65 (323)
444 2bcg_Y Protein YP2, GTP-bindin 88.6 0.25 8.7E-06 44.1 3.2 24 221-244 8-31 (206)
445 3a1s_A Iron(II) transport prot 88.6 0.21 7.2E-06 47.8 2.8 26 219-244 3-28 (258)
446 3iev_A GTP-binding protein ERA 88.6 0.21 7E-06 49.1 2.8 28 217-244 6-33 (308)
447 2zan_A Vacuolar protein sortin 88.5 0.3 1E-05 50.5 4.1 25 221-246 167-191 (444)
448 2w9m_A Polymerase X; SAXS, DNA 88.5 0.18 6.1E-06 54.3 2.5 74 131-204 94-178 (578)
449 3u61_B DNA polymerase accessor 88.5 0.32 1.1E-05 47.1 4.0 27 221-248 48-74 (324)
450 1ni3_A YCHF GTPase, YCHF GTP-b 88.4 0.3 1E-05 50.4 4.0 28 217-244 16-43 (392)
451 1uf9_A TT1252 protein; P-loop, 88.4 0.33 1.1E-05 43.2 3.8 23 356-378 124-146 (203)
452 2vhj_A Ntpase P4, P4; non- hyd 88.4 0.38 1.3E-05 48.7 4.7 30 220-250 122-151 (331)
453 2o52_A RAS-related protein RAB 88.3 0.24 8.3E-06 44.4 2.9 25 220-244 24-48 (200)
454 2z4s_A Chromosomal replication 88.3 0.25 8.5E-06 51.1 3.3 24 221-244 130-153 (440)
455 3vfd_A Spastin; ATPase, microt 88.2 0.34 1.2E-05 48.7 4.2 28 221-249 148-175 (389)
456 2ce7_A Cell division protein F 88.1 0.35 1.2E-05 51.0 4.4 25 224-249 52-76 (476)
457 2r6f_A Excinuclease ABC subuni 88.1 0.075 2.6E-06 60.8 -0.8 46 187-238 16-61 (972)
458 2ffh_A Protein (FFH); SRP54, s 88.1 0.97 3.3E-05 47.0 7.6 29 220-249 97-125 (425)
459 2qgz_A Helicase loader, putati 88.1 0.32 1.1E-05 47.8 3.8 24 221-244 152-175 (308)
460 2ew1_A RAS-related protein RAB 88.1 0.28 9.6E-06 44.5 3.2 25 220-244 25-49 (201)
461 3iby_A Ferrous iron transport 88.0 0.27 9.2E-06 47.1 3.2 22 223-244 3-24 (256)
462 2aka_B Dynamin-1; fusion prote 88.0 0.6 2E-05 44.3 5.5 26 219-244 24-49 (299)
463 3b1v_A Ferrous iron uptake tra 88.0 0.29 9.9E-06 47.5 3.4 23 221-243 3-25 (272)
464 2atx_A Small GTP binding prote 87.9 0.3 1E-05 43.1 3.2 25 220-244 17-41 (194)
465 4aby_A DNA repair protein RECN 87.9 0.16 5.3E-06 51.2 1.4 24 219-243 59-82 (415)
466 3e2i_A Thymidine kinase; Zn-bi 87.8 0.36 1.2E-05 46.3 3.8 27 217-243 24-51 (219)
467 2zr9_A Protein RECA, recombina 87.7 0.34 1.2E-05 48.8 3.9 25 220-244 60-84 (349)
468 2f7s_A C25KG, RAS-related prot 87.7 0.29 1E-05 44.0 3.0 25 220-244 24-48 (217)
469 3def_A T7I23.11 protein; chlor 87.7 0.31 1.1E-05 46.3 3.3 26 219-244 34-59 (262)
470 2iw3_A Elongation factor 3A; a 87.6 0.29 9.9E-06 56.2 3.6 24 220-243 460-483 (986)
471 2qnr_A Septin-2, protein NEDD5 87.6 0.25 8.5E-06 48.5 2.6 23 221-243 18-40 (301)
472 3upu_A ATP-dependent DNA helic 87.5 0.45 1.5E-05 49.1 4.7 22 223-244 47-68 (459)
473 1kft_A UVRC, excinuclease ABC 87.5 0.26 9E-06 38.9 2.3 32 132-164 22-53 (78)
474 3hr8_A Protein RECA; alpha and 87.4 0.36 1.2E-05 49.1 3.8 26 219-244 59-84 (356)
475 1ypw_A Transitional endoplasmi 87.3 0.52 1.8E-05 52.7 5.3 29 219-248 236-264 (806)
476 2cjw_A GTP-binding protein GEM 87.3 0.37 1.3E-05 43.1 3.5 23 221-243 6-28 (192)
477 3lxw_A GTPase IMAP family memb 87.3 0.3 1E-05 46.2 3.0 27 218-244 18-44 (247)
478 1w5s_A Origin recognition comp 87.2 0.31 1.1E-05 48.2 3.1 24 221-244 50-75 (412)
479 2fu5_C RAS-related protein RAB 87.2 0.2 6.7E-06 43.6 1.5 24 221-244 8-31 (183)
480 1j8m_F SRP54, signal recogniti 87.1 0.76 2.6E-05 45.2 5.9 25 220-244 97-121 (297)
481 3tqf_A HPR(Ser) kinase; transf 87.1 0.35 1.2E-05 45.1 3.2 25 220-244 15-39 (181)
482 2qpt_A EH domain-containing pr 87.0 0.82 2.8E-05 48.9 6.4 26 219-244 63-88 (550)
483 1jwy_B Dynamin A GTPase domain 87.0 0.39 1.3E-05 46.2 3.6 26 219-244 22-47 (315)
484 1tf7_A KAIC; homohexamer, hexa 86.9 0.36 1.2E-05 50.9 3.5 25 220-244 280-304 (525)
485 2dhr_A FTSH; AAA+ protein, hex 86.7 0.35 1.2E-05 51.3 3.3 23 224-247 67-89 (499)
486 3gj0_A GTP-binding nuclear pro 86.7 0.27 9.2E-06 44.6 2.2 27 217-243 11-38 (221)
487 3qf7_A RAD50; ABC-ATPase, ATPa 86.6 0.36 1.2E-05 48.7 3.3 21 223-243 25-45 (365)
488 3pih_A Uvrabc system protein A 86.6 0.16 5.5E-06 57.8 0.7 36 199-238 6-41 (916)
489 3k1j_A LON protease, ATP-depen 86.3 0.37 1.3E-05 51.8 3.3 25 222-247 61-85 (604)
490 1ci4_A Protein (barrier-TO-aut 86.2 0.63 2.2E-05 38.7 3.9 63 128-195 12-77 (89)
491 3bh0_A DNAB-like replicative h 86.2 0.44 1.5E-05 46.9 3.6 27 218-244 65-91 (315)
492 3cpj_B GTP-binding protein YPT 86.2 0.41 1.4E-05 43.6 3.2 25 220-244 12-36 (223)
493 1wb9_A DNA mismatch repair pro 86.1 0.4 1.4E-05 53.8 3.6 26 219-244 605-630 (800)
494 3t5d_A Septin-7; GTP-binding p 86.0 0.38 1.3E-05 46.0 2.9 22 221-242 8-29 (274)
495 1wf3_A GTP-binding protein; GT 85.9 0.37 1.3E-05 47.3 2.9 26 219-244 5-30 (301)
496 4djt_A GTP-binding nuclear pro 85.9 0.18 6.2E-06 45.4 0.6 25 219-243 9-33 (218)
497 1h65_A Chloroplast outer envel 85.9 0.45 1.5E-05 45.3 3.4 26 219-244 37-62 (270)
498 1wcn_A Transcription elongatio 85.8 0.22 7.6E-06 39.3 1.0 38 132-169 5-42 (70)
499 3ux8_A Excinuclease ABC, A sub 85.7 0.27 9.1E-06 53.5 1.9 22 220-241 347-368 (670)
500 4f4c_A Multidrug resistance pr 85.6 0.42 1.4E-05 56.3 3.5 25 220-244 443-467 (1321)
No 1
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=99.96 E-value=3.5e-28 Score=231.83 Aligned_cols=213 Identities=32% Similarity=0.602 Sum_probs=168.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCC----------CCccchhhhhhcCCCCCchHHHH
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVG----------PDHFNILGAYYDAPERYAYTFQN 289 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~----------~~~~~lL~~fY~dp~r~af~~Ql 289 (470)
++++|+|||++||||||+++.|+++ +.. ...+.||++.|+++. ..++++++.+|.++.++++.+|.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~-l~~---~~~~~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKT-YPE---WHVATEPVATWQNIQAAGNQKACTAQSLGNLLDMMYREPARWSYTFQT 76 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH-CTT---SEEECCCGGGTSCCC------------CCCHHHHHHHSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH-cCC---CeeeecchhhhccccccccccccccccCCchHHHHHhCcccchhHHHH
Confidence 5789999999999999999999997 632 346889999997542 12456889999998888999999
Q ss_pred HHHHHHHHHHHHhc-----CCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCC-CCCCcEEEEE
Q 012135 290 YVFVTRVMQERESS-----GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLP-GLIPDGFIYL 363 (470)
Q Consensus 290 ~Fla~R~~ql~~~~-----~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp-~lkPDLvIyL 363 (470)
++++.|++++.... ....+.+++||++++|+|+|+.++|+.+.+++.++..|.+|+.++...++ ...||++|||
T Consensus 77 ~~ll~r~~~~~~~~~~~~~~~~~~~l~~~r~vi~Dr~~~s~~~y~~~~~~~~e~~~~~~~~~~l~~~~~~~~~pd~~i~l 156 (241)
T 2ocp_A 77 FSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENGSLSDIEWHIYQDWHSFLLWEFASRITLHGFIYL 156 (241)
T ss_dssp HHHHHHHHHHHSCCCHHHHSCSSCEEEEESCHHHHHHTHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSHHHHCCCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhcccCCceEeeeCCchhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEE
Confidence 99999988754321 22356789999999999999999999988888899999999988865432 1279999999
Q ss_pred eCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCc---------CCCCCeEEEEccCCCcccCCCCchHHHHHHH
Q 012135 364 RASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFP---------FESGNHGVLAVSKLPLHIDNGLHPDIRDRVF 434 (470)
Q Consensus 364 da~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~---------~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~ 434 (470)
++|++++++|+.+|+|..|...+.+|++++++.|+.|+.+ +...++.+||++. ++ ....+.++.|+
T Consensus 157 ~~~~~~~~~R~~~R~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~~~~~~~~Id~~~-~~----~~v~~~i~~i~ 231 (241)
T 2ocp_A 157 QASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVND-DF----SEEVTKQEDLM 231 (241)
T ss_dssp ECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCS-CT----TTCHHHHHHHH
T ss_pred ECCHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHhhccccccccccCCCCEEEEECCC-Ch----hhCHHHHHHHH
Confidence 9999999999999999877655689999999999999874 3345789999887 43 12344556666
Q ss_pred HhhhhhH
Q 012135 435 YLDGPHM 441 (470)
Q Consensus 435 ~~I~~~L 441 (470)
+.|.+.+
T Consensus 232 ~~i~~~l 238 (241)
T 2ocp_A 232 REVNTFV 238 (241)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 2
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.95 E-value=2.2e-27 Score=224.82 Aligned_cols=196 Identities=12% Similarity=0.049 Sum_probs=137.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCCCCccchhhhhhcCCCCCchHHH-HHHHHHHHHHH
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQ-NYVFVTRVMQE 299 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Q-l~Fla~R~~ql 299 (470)
++||+|||+||||||||++.|+++ |....-+..++||.+++ .+..++.++.++..+....+ ++|+++|.+|+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~-L~~~~~v~~~~eP~~t~------~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~ 74 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHR-LVKDYDVIMTREPGGVP------TGEEIRKIVLEGNDMDIRTEAMLFAASRREHL 74 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH-HTTTSCEEEEESSTTCH------HHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH-HHCCCCEEEeeCCCCCh------HHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 579999999999999999999997 75433356688996542 24567888877777665544 56889999886
Q ss_pred HHhc---CCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHHHHHH
Q 012135 300 RESS---GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMML 376 (470)
Q Consensus 300 ~~~~---~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~leRI~k 376 (470)
.... ...+.+||+||+ +++..+|+ |...+.+.+.+..+..+... .+ .||++||||+||+++++|+.+
T Consensus 75 ~~~i~p~l~~g~~Vi~DRy------~~S~~ayq-~~~~~~~~~~~~~l~~~~~~-~~--~PDl~i~Ld~~~e~~~~Ri~~ 144 (205)
T 4hlc_A 75 VLKVIPALKEGKVVLCDRY------IDSSLAYQ-GYARGIGVEEVRALNEFAIN-GL--YPDLTIYLNVSAEVGRERIIK 144 (205)
T ss_dssp HHTHHHHHHTTCEEEEECC------HHHHHHHT-TTTTSSCHHHHHHHHHHHHT-TC--CCSEEEEEECCHHHHHHHHHC
T ss_pred HHHHHHHHHcCCEEEecCc------ccchHHHH-hccccchHHHHHHHHHHHhc-CC--CCCEEeeeCCCHHHHHHHHHh
Confidence 5431 122455555555 45556675 33344455556665554432 33 899999999999999999999
Q ss_pred hccccccC--CcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhhhhHH
Q 012135 377 RKRAEEGG--VSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMH 442 (470)
Q Consensus 377 RgR~~E~~--i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~~L~ 442 (470)
|++..+.. .+.+|++++++.|..++..+. .++.+||++. +.+++.+.|.+.|.+.|.
T Consensus 145 r~~~~dr~e~~~~~f~~~v~~~Y~~l~~~~~-~~~~~IDa~~--------~~e~V~~~i~~~i~~~L~ 203 (205)
T 4hlc_A 145 NSRDQNRLDQEDLKFHEKVIEGYQEIIHNES-QRFKSVNADQ--------PLENVVEDTYQTIIKYLE 203 (205)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHSCC-TTEEEEETTS--------CHHHHHHHHHHHHHHHHC
T ss_pred cCCcccchhccCHHHHHHHHHHHHHHHHhCC-CCEEEEECCC--------CHHHHHHHHHHHHHHHHh
Confidence 98754331 257899999999999987654 4699999986 668888888777776553
No 3
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.95 E-value=4.2e-27 Score=227.48 Aligned_cols=214 Identities=36% Similarity=0.621 Sum_probs=166.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCC-------------CCccchhhhhhcCCCCC
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVG-------------PDHFNILGAYYDAPERY 283 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~-------------~~~~~lL~~fY~dp~r~ 283 (470)
...++++|+|||++||||||+++.|+++ |.. ..++.||++.|.++. |.++++++.||.++.++
T Consensus 20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~-l~~---~~~i~ep~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~ 95 (263)
T 1p5z_B 20 EGTRIKKISIEGNIAAGKSTFVNILKQL-CED---WEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERW 95 (263)
T ss_dssp ---CCEEEEEECSTTSSHHHHHTTTGGG-CTT---EEEECCCHHHHTSCCCC------------CCCCHHHHHHHCHHHH
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHh-cCC---CEEEecchhhhhccccccccccccccccccCCchHHHHHhCchhc
Confidence 3457899999999999999999999987 532 467889999997542 23456788899888888
Q ss_pred chHHHHHHHHHHHHHHHH-----hcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCC-CCCC
Q 012135 284 AYTFQNYVFVTRVMQERE-----SSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLP-GLIP 357 (470)
Q Consensus 284 af~~Ql~Fla~R~~ql~~-----~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp-~lkP 357 (470)
++.+|.+++.+|+.++.+ ......+.+..+++|++|+|+|+..+|+.+.+...++..|.+|+..+...++ ...|
T Consensus 96 ~~~~~~~~l~~~~r~~~~~~~~~l~~~i~~~l~~g~~Vi~Dry~~s~~~y~~~~~~~~e~~~~~~~~~~l~~~~~~~~~p 175 (263)
T 1p5z_B 96 SFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLEL 175 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSGGGGSSSCEEEEESCHHHHHHTHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhhccCCCceEEecceeecHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhccCCC
Confidence 899999887777765432 1122346678899999999999999999888888888889888887764321 1279
Q ss_pred cEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCc---------CCCCCeEEEEccCCCcccCCCCchH
Q 012135 358 DGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFP---------FESGNHGVLAVSKLPLHIDNGLHPD 428 (470)
Q Consensus 358 DLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~---------~~~~~v~VIDvd~lD~~~~~~~~ee 428 (470)
|++|||++|++++++|+.+|+|+.+...+.+|++.+++.|+.|+.+ +...++.+||++. ++++
T Consensus 176 d~vi~L~~~~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~Id~~~--------~~ee 247 (263)
T 1p5z_B 176 DGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNE--------DFKD 247 (263)
T ss_dssp SEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCS--------CHHH
T ss_pred CeEEEEECCHHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhccCCEEEEECCC--------CHHH
Confidence 9999999999999999999999877767789999999999998542 1124588899886 4688
Q ss_pred HHHHHHHhhhhhHH
Q 012135 429 IRDRVFYLDGPHMH 442 (470)
Q Consensus 429 v~d~V~~~I~~~L~ 442 (470)
+.+.|.+.|...+.
T Consensus 248 v~~~I~~~l~~~l~ 261 (263)
T 1p5z_B 248 KYESLVEKVKEFLS 261 (263)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88888887776553
No 4
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.93 E-value=1.3e-25 Score=213.63 Aligned_cols=206 Identities=31% Similarity=0.537 Sum_probs=146.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCCCCccchhhhhhcCCCCCchHHHHHHHHHHH
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRV 296 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~Fla~R~ 296 (470)
+..++.+|+|+|++|||||||++.|+.. .+-+....||+..|... .+..+.+.+|.++..+++.+|...+....
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~q~~~l~~~~ 89 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNV--NGVNLLELMYKDPKKWAMPFQSYVTLTML 89 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCB--TTBCHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcc--cCCChHHHHHhChHhhhhhhHHHHHHHHH
Confidence 4467899999999999999999999974 22356678887665321 12334455556666677888876554433
Q ss_pred HHHHHhcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHHHHHH
Q 012135 297 MQERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMML 376 (470)
Q Consensus 297 ~ql~~~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~leRI~k 376 (470)
.+..+ ....+.++.||++++|+|+|+..+|+.|.++..++..++.|+.++.... ...||++|||++|++++++|+.+
T Consensus 90 ~~~~~--~~i~~~l~~~r~v~~dry~~s~~ayq~~~l~~~~~~~~~~~~~~~~~~~-~~~pD~vi~Ld~~~e~~~~Ri~~ 166 (230)
T 2vp4_A 90 QSHTA--PTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEESI-HVQADLIIYLRTSPEVAYERIRQ 166 (230)
T ss_dssp HHHHC--CCCSSEEEEESCHHHHHHTHHHHHHHHTSSCHHHHHHHHHHHHHHHHHB-CCCCSEEEEEECCHHHHHHHHHH
T ss_pred HHHHh--ccccCceeecCCccccHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhh-cCCCCEEEEEeCCHHHHHHHHHH
Confidence 33322 2345788999999999999999999988888888899998887776422 13899999999999999999999
Q ss_pred hccccccCCcHHHHHHHHHHHHhhcCcCC---CCCeEEEEccCCCcccCCCCchHHHHHHHHhhhh
Q 012135 377 RKRAEEGGVSLDYLRSLHEKHENWLFPFE---SGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGP 439 (470)
Q Consensus 377 RgR~~E~~i~~eYLe~L~e~Ye~w~~~~~---~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~ 439 (470)
|+|..|...+.+|+++++..|+.|+..+. ..++.+||++. +.+++.+.|.+.+..
T Consensus 167 R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~--------~~eev~~~I~~~l~~ 224 (230)
T 2vp4_A 167 RARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADL--------NLENIGTEYQRSESS 224 (230)
T ss_dssp HCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC-----------------------
T ss_pred cCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCC--------CHHHHHHHHHHHHHH
Confidence 99987765677999999999999986542 34578999885 567777777666654
No 5
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=99.93 E-value=4.5e-26 Score=231.69 Aligned_cols=188 Identities=13% Similarity=0.133 Sum_probs=139.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCCCCccchhhhhhcCCCC-------------CchH
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPER-------------YAYT 286 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r-------------~af~ 286 (470)
++++|+|||+|||||||+++.|+++ |+....+..++||+..|... .+++.|+.+|.++.+ +.+.
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~-L~~~~~v~~trEPg~~w~~~--~g~e~ir~~~~d~~~~~~~~~~~~~~e~~~~~ 82 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASA-ASGGSPTLYFPEPMAYWRTL--FETDVISGIYDTQNRKQQGNLAVDDAALITAH 82 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSG-GGCSSCEEEECCCHHHHHTS--SSSCHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-hccCCcEEEEeCCCCccccc--cchHHHHHHHHhhhhccccccCHHHHHHHHHH
Confidence 5799999999999999999999997 77654367799999888754 234788999865432 3467
Q ss_pred HHHHHH---HHHHHHHHHhc------C--CCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCC
Q 012135 287 FQNYVF---VTRVMQERESS------G--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGL 355 (470)
Q Consensus 287 ~Ql~Fl---a~R~~ql~~~~------~--~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~l 355 (470)
+|++|+ +.|.+|+.+.. + ..+.+||+||+++|+.++|..+.|+.|.++..++. ++...+. ++.
T Consensus 83 lQLlf~a~la~ra~~~~~~i~~~~~~pal~~g~~VI~DR~~~Ss~a~f~~~~yq~g~l~~~~i~---~l~~~~~---~~~ 156 (334)
T 1p6x_A 83 YQSRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVFDRHPVASTVCFPAARYLLGDMSMCALM---AMVATLP---REP 156 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCEEEECCCSCCSEEEEEESCTHHHHTHHHHHHHHTTSSCHHHHH---HHHTTCC---CCC
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhccCccccCCCEEEEeCChHHHHHHHHHHHHhcCCCCHHHHH---HHHHHcc---CCC
Confidence 788876 36776664432 1 23568999999999987898888988888765543 2222111 124
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCcC---CCCCeEEEEccCC
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPF---ESGNHGVLAVSKL 417 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~---~~~~v~VIDvd~l 417 (470)
.||++||||+||+++++||++|||+.|. ++.+|+++|++.|..|+... ..+++..+|.+.+
T Consensus 157 ~PDLtIyLd~~pe~~l~RI~~RgR~~Er-i~~eyl~~vr~~Y~~l~~~~~~l~~~~~~~~~w~~l 220 (334)
T 1p6x_A 157 QGGNIVVTTLNVEEHIRRLRTRARIGEQ-IDITLIATLRNVYFMLVNTCHFLRSGRVWRDGWGEL 220 (334)
T ss_dssp TTEEEEEEECCHHHHHHHHHHHSCTTCC-CCHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTTTTS
T ss_pred CCCEEEEEECCHHHHHHHHHhcCCCccc-CCHHHHHHHHHHHHHHHHHHHhhccCCceeechhhc
Confidence 8999999999999999999999998786 78899999999999987432 2233444444444
No 6
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.92 E-value=2.9e-25 Score=213.90 Aligned_cols=195 Identities=14% Similarity=0.077 Sum_probs=130.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHhhhcC-CCc-eEe-ccCCccccccCCCCccchhhhhhcCCCCCchHHHH-HHHH
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANETLEL-RDL-VEI-VPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQN-YVFV 293 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~-~~~-~Ev-v~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql-~Fla 293 (470)
.+++++|+|||++||||||+++.|+++ |.. .++ +.. ++||.+++ .+..++.++.++..+++..+. +|++
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~-l~~~~g~~v~~~treP~~t~------~g~~ir~~l~~~~~~~~~~e~llf~a 90 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEY-LSEIYGVNNVVLTREPGGTL------LNESVRNLLFKAQGLDSLSELLFFIA 90 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHH-HHHHHCGGGEEEEESSCSSH------HHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH-HhhccCceeeEeeeCCCCCh------HHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 357899999999999999999999997 765 432 234 78986431 134567777765448877776 7899
Q ss_pred HHHHHHHHh-cC--CCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHH
Q 012135 294 TRVMQERES-SG--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTC 370 (470)
Q Consensus 294 ~R~~ql~~~-~~--~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~ 370 (470)
+|++++.+. .+ ..+.+||+||+++|+ .+|+ |...+.++++|..+..++.. | +||++|||++||+++
T Consensus 91 ~R~~~~~~~I~paL~~g~~VI~DRy~~S~------~Ayq-~~~~g~~~~~~~~l~~~~~~--~--~PDl~I~Ldv~~e~~ 159 (223)
T 3ld9_A 91 MRREHFVKIIKPSLMQKKIVICDRFIDST------IAYQ-GYGQGIDCSLIDQLNDLVID--V--YPDITFIIDVDINES 159 (223)
T ss_dssp HHHHHHHHTHHHHHHTTCEEEEESCHHHH------HHHH-TTTTCCCHHHHHHHHHHHCS--S--CCSEEEEEECC----
T ss_pred HHHHHHHHHHHHHHhcCCeEEEccchhhH------HHhc-cccCCccHHHHHHHHHHhhc--C--CCCeEEEEeCCHHHH
Confidence 999987652 11 224567777766554 4565 33345567777777665543 5 899999999999999
Q ss_pred HHHHHHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhhhhHHh
Q 012135 371 HKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMHS 443 (470)
Q Consensus 371 leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~~L~~ 443 (470)
++|+ +|+| +|. .+.+|++++++.|..|...+. .++.+||++. +.+++ ++|.+.|.+.|.+
T Consensus 160 ~~Ri-~rdr-~E~-~~~e~~~rv~~~y~~la~~~~-~~~~vIDa~~--------sieeV-~~I~~~l~~~lg~ 219 (223)
T 3ld9_A 160 LSRS-CKNG-YEF-ADMEFYYRVRDGFYDIAKKNP-HRCHVITDKS--------ETYDI-DDINFVHLEVIKV 219 (223)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHCT-TTEEEEESSC--------SSSCC-CHHHHHHHHHHHH
T ss_pred HHHh-ccCc-ccc-chHHHHHHHHHHHHHHHHHCC-CCEEEEcCCC--------CHHHH-HHHHHHHHHHHhh
Confidence 9999 7776 554 468999999999999988764 5799999986 56777 8888877776653
No 7
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.92 E-value=2.5e-24 Score=205.52 Aligned_cols=196 Identities=14% Similarity=0.077 Sum_probs=137.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCc--eEeccCCccccccCCCCccchhhhhhcCCC-----CCc-hHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDL--VEIVPEPIDKWQDVGPDHFNILGAYYDAPE-----RYA-YTFQNY 290 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~--~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~-----r~a-f~~Ql~ 290 (470)
|++++|+|||++||||||+++.|+++ |...++ +..++||.++ ..+..++.++.++. .+. .+..++
T Consensus 1 m~g~~i~~eG~~gsGKsT~~~~l~~~-l~~~~~~~v~~~rep~~t------~~g~~ir~~l~~~~~~~~~~~~~~~e~lL 73 (213)
T 4tmk_A 1 MRSKYIVIEGLEGAGKTTARNVVVET-LEQLGIRDMVFTREPGGT------QLAEKLRSLLLDIKSVGDEVITDKAEVLM 73 (213)
T ss_dssp -CCCEEEEEECTTSCHHHHHHHHHHH-HHHTTCCCEEEEESSCSS------HHHHHHHHHHHSTTTTTTCCCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH-HHHcCCCcceeeeCCCCC------HHHHHHHHHHhcccccccccCChHHHHHH
Confidence 67999999999999999999999997 765553 3568898543 12345666766442 233 345567
Q ss_pred HHHHHHHHHHHhc---CCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCH
Q 012135 291 VFVTRVMQERESS---GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASP 367 (470)
Q Consensus 291 Fla~R~~ql~~~~---~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~p 367 (470)
|+++|.+|+.... ...+.+||+||++ ++..+|+.+ ..+.+.+.+..+..+.. .+| .||++||||+||
T Consensus 74 ~~A~R~~~~~~~i~paL~~g~~VI~DRy~------~S~~AYq~~-~~g~~~~~~~~l~~~~~-~~~--~PDl~i~Ldv~~ 143 (213)
T 4tmk_A 74 FYAARVQLVETVIKPALANGTWVIGDRHD------LSTQAYQGG-GRGIDQHMLATLRDAVL-GDF--RPDLTLYLDVTP 143 (213)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCEEEEECCH------HHHHHHTTT-TTCCCHHHHHHHHHHHH-TTC--CCSEEEEEECCH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEcCcH------hHHHHHccc-ccCCCHHHHHHHHHHhc-cCC--CCCEEEEEeCCH
Confidence 8999999875431 1224556665554 555677642 12223334444333332 344 899999999999
Q ss_pred HHHHHHHHHhcc--ccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhhhhHH
Q 012135 368 DTCHKRMMLRKR--AEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMH 442 (470)
Q Consensus 368 Ev~leRI~kRgR--~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~~L~ 442 (470)
+++++|+.+|++ .+|. .+.+|++++++.|+.+...+ .++.+||++. +.+++.+.|.+.+.+.|.
T Consensus 144 e~~~~Ri~~R~~~dr~E~-~~~~f~~rv~~~y~~la~~~--~~~~vIDa~~--------s~eeV~~~I~~~l~~~l~ 209 (213)
T 4tmk_A 144 EVGLKRARARGELDRIEQ-ESFDFFNRTRARYLELAAQD--KSIHTIDATQ--------PLEAVMDAIRTTVTHWVK 209 (213)
T ss_dssp HHHHHHHHHHSSCCTTTT-SCHHHHHHHHHHHHHHHHTC--TTEEEEETTS--------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccchhh-hHHHHHHHHHHHHHHHHHHC--CcEEEECCCC--------CHHHHHHHHHHHHHHHHH
Confidence 999999999975 2332 36899999999999998654 5799999986 678888888887776553
No 8
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.92 E-value=2e-24 Score=205.89 Aligned_cols=198 Identities=15% Similarity=0.039 Sum_probs=141.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCc-eEeccCCccccccCCCCccchhhhhhcCCC--CC-chHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAYYDAPE--RY-AYTFQNYVFVT 294 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~-~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~--r~-af~~Ql~Fla~ 294 (470)
|++++|+|||++||||||+++.|+++ |...++ +..++||.++ ..+..++.++.++. .+ ..+.+++|+++
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~-l~~~~~~v~~~~~p~~~------~~g~~i~~~l~~~~~~~~~~~~~~llf~a~ 76 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAER-LRERGIEVQLTREPGGT------PLAERIRELLLAPSDEPMAADTELLLMFAA 76 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH-HHTTTCCEEEEESSCSS------HHHHHHHHHHHSCCSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH-HHHcCCCcccccCCCCC------HHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 78999999999999999999999997 765543 3567888432 11345788887764 34 34667889999
Q ss_pred HHHHHHHhc---CCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHH
Q 012135 295 RVMQERESS---GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCH 371 (470)
Q Consensus 295 R~~ql~~~~---~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~l 371 (470)
|++|+.+.. ...+.+||+||++ ++..+|+.. ....+.+.+..+..+.. .+| .||++|||++||++++
T Consensus 77 R~~~~~~~i~p~l~~g~~Vi~DRy~------~S~~ayq~~-~~g~~~~~~~~l~~~~~-~~~--~PDlvi~Ld~~~e~~~ 146 (213)
T 4edh_A 77 RAQHLAGVIRPALARGAVVLCDRFT------DATYAYQGG-GRGLPEARIAALESFVQ-GDL--RPDLTLVFDLPVEIGL 146 (213)
T ss_dssp HHHHHHHTHHHHHHTTCEEEEESCH------HHHHHHTTT-TTCCCHHHHHHHHHHHH-TTC--CCSEEEEEECCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEECccH------hHHHHHhhh-ccCCCHHHHHHHHHHHh-cCC--CCCEEEEEeCCHHHHH
Confidence 999875431 1224566666655 555667632 12233444555444332 355 8999999999999999
Q ss_pred HHHHHhcc--ccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhhhhHHh
Q 012135 372 KRMMLRKR--AEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMHS 443 (470)
Q Consensus 372 eRI~kRgR--~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~~L~~ 443 (470)
+|+.+|++ .+|. .+.+|++++++.|+.+...+. .++.+||++. +.+++.+.|.+.|.+.|.+
T Consensus 147 ~Ri~~R~~~dr~E~-~~~~~~~rv~~~y~~l~~~~~-~~~~vIDa~~--------s~eeV~~~I~~~l~~~l~~ 210 (213)
T 4edh_A 147 ARAAARGRLDRFEQ-EDRRFFEAVRQTYLQRAAQAP-ERYQVLDAGL--------PLAEVQAGLDRLLPNLLER 210 (213)
T ss_dssp HHHCCCSSCCTTTT-SCHHHHHHHHHHHHHHHHHCT-TTEEEEETTS--------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcCcccc-cHHHHHHHHHHHHHHHHHHCC-CcEEEEeCCC--------CHHHHHHHHHHHHHHHHHh
Confidence 99999864 2343 357999999999999987664 4799999986 6799999998888876643
No 9
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.92 E-value=3e-24 Score=201.82 Aligned_cols=191 Identities=19% Similarity=0.064 Sum_probs=126.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCCCc-eEeccCCccccccCCCCccchhhhhhcCCCCCchHHHHHHHHHHHHHHH
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQER 300 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~-~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~Fla~R~~ql~ 300 (470)
|||+|||+||||||||+++|+++ |...++ +..++||.+++. +..++.++.+........-++|+++|..+..
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~-L~~~g~~v~~treP~~t~~------~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~ 73 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQY-LEKRGKKVILKREPGGTET------GEKIRKILLEEEVTPKAELFLFLASRNLLVT 73 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH-HHHTTCCEEEEESSCSSHH------HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HHHCCCcEEEEECCCCCcH------HHHHHHHhhcccCChHHHHHHHHHHHHHHHH
Confidence 79999999999999999999997 765553 456899965422 2344454443322233334456777765543
Q ss_pred Hhc--CCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHHHHHHhc
Q 012135 301 ESS--GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRK 378 (470)
Q Consensus 301 ~~~--~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~leRI~kRg 378 (470)
... ...+.+||+||+ +++..+|+.. ......+....+..+... . +.||++||||+||+++++|..+|+
T Consensus 74 ~I~~~L~~g~~Vi~DRy------~~S~~ayq~~-~~~~~~~~i~~l~~~~~~-~--~~PDl~i~Ld~~~e~~~~R~~~~d 143 (197)
T 3hjn_A 74 EIKQYLSEGYAVLLDRY------TDSSVAYQGF-GRNLGKEIVEELNDFATD-G--LIPDLTFYIDVDVETALKRKGELN 143 (197)
T ss_dssp HHHHHHTTTCEEEEESC------HHHHHHHHTT-TTCSCHHHHHHHHHHHHT-T--CCCSEEEEEECCHHHHHHHC---C
T ss_pred HHHHHHHCCCeEEeccc------chHHHHHHHh-ccCCCHHHHHHHHhhhhc-C--CCCCceeecCcChHHHHHhCcCcC
Confidence 321 123455655555 4555677632 223334445455444332 2 389999999999999999987776
Q ss_pred cccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhhhhHH
Q 012135 379 RAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMH 442 (470)
Q Consensus 379 R~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~~L~ 442 (470)
| +| ..+|++++++.|..+...+. .++.+||++. +.+++.++|++.|.+++.
T Consensus 144 r-~e---~~ef~~rv~~~y~~la~~~~-~~~~~IDa~~--------~~eeV~~~I~~~i~~rl~ 194 (197)
T 3hjn_A 144 R-FE---KREFLERVREGYLVLAREHP-ERIVVLDGKR--------SIEEIHRDVVREVKRRWK 194 (197)
T ss_dssp T-TC---CHHHHHHHHHHHHHHHHHCT-TTEEEEETTS--------CHHHHHHHHHHHHSCC--
T ss_pred c-cc---cHHHHHHHHHHHHHHHHhCC-CCEEEEcCCC--------CHHHHHHHHHHHHHHHhC
Confidence 5 33 35899999999999877654 4689999986 679999999998887764
No 10
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=99.91 E-value=2.9e-25 Score=228.89 Aligned_cols=173 Identities=16% Similarity=0.147 Sum_probs=128.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCCCCccchhhhhhcCCCCC---------c----h
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERY---------A----Y 285 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~---------a----f 285 (470)
+++++|+|||+|||||||+++.|+++ |...+ +..++||+++|..+ .+++.|+.||.++.+| + +
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~-L~~~g-vv~trEPg~~w~~~--~gn~~Lr~~yld~~r~~~~~~~~~ea~l~~a 122 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVAL-GSRDD-IVYVPEPMTYWRVL--GASETIANIYTTQHRLDQGEISAGDAAVVMT 122 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC-----CC-EEEECCCHHHHHTT--SSSCHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH-hhhCC-EEEEeCCCCccccc--cchHHHHHHHhChhhhccccCCHHHHHHHHH
Confidence 47899999999999999999999997 77665 67899999998764 2457999999887655 4 3
Q ss_pred HHHHHHH------HHHHHHHHHhc------CCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCC
Q 012135 286 TFQNYVF------VTRVMQERESS------GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLP 353 (470)
Q Consensus 286 ~~Ql~Fl------a~R~~ql~~~~------~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp 353 (470)
..|++|+ ++|+++..... ...+.+||+||+++|+.++|..+.|+.|.++..++..+.. .+. .
T Consensus 123 ~~QL~fa~r~~~~a~r~~~~i~paL~~~~al~~g~iVI~DR~~~Ss~~ayq~~~y~~g~l~~~~i~~l~~---~~~-~-- 196 (376)
T 1of1_A 123 SAQITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVA---LIP-P-- 196 (376)
T ss_dssp HHHHHHHHHHHHHHHHHGGGEEEEC-----CCCSEEEEEECCHHHHHTHHHHHHHHTTSSCHHHHHHHHH---TCC-C--
T ss_pred HHHHHHhccchHHHHHHHHHhhhhhcccccccCCCeEEEeeChhHHHHHHHHHHHhcCCCCHHHHHHHHH---hcc-c--
Confidence 5677777 44444322111 1236789999999999777887778888887665544322 111 1
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcC
Q 012135 354 GLIPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLF 402 (470)
Q Consensus 354 ~lkPDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~ 402 (470)
...||++||+++||+++++||++|||+.|. ++.+|+++|++.|..++.
T Consensus 197 ~~ppdlt~Lldl~pe~~l~RI~~RgR~~Er-i~leyl~rVr~~Y~~la~ 244 (376)
T 1of1_A 197 TLPGTNIVLGALPEDRHIDRLAKRQRPGER-LDLAMLAAIRRVYGLLAN 244 (376)
T ss_dssp CCTTCEEEEEECCHHHHHHHHHHSCCTTCC-CCHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecCCHHHHHHHHHhcCCCccc-CCHHHHHHHHHHHHHHHH
Confidence 124678888999999999999999998776 689999999999997643
No 11
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.91 E-value=1.2e-23 Score=191.89 Aligned_cols=193 Identities=20% Similarity=0.300 Sum_probs=148.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCCCCccchhhhhhcCCCCCchHHHHHHHHHHHHHHHH
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQERE 301 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~Fla~R~~ql~~ 301 (470)
|+|+|+|++||||||+++.|+++ ++. ..+.||.. +..+++.||.++.++++.+|++|+++|++++..
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~-l~~----~~~~e~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 67 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKK-LGY----EIFKEPVE--------ENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQ 67 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH-HCC----EEECCCGG--------GCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CEEEEECCCccCHHHHHHHHHHh-cCC----cEEccccc--------ccHHHHHHHhCccccchhHHHHHHHHHHHHHHH
Confidence 58999999999999999999997 764 24556643 245788888887778888898899999887544
Q ss_pred hcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCC-----CCCCcEEEEEeCCHHHHHHHHHH
Q 012135 302 SSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLP-----GLIPDGFIYLRASPDTCHKRMML 376 (470)
Q Consensus 302 ~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp-----~lkPDLvIyLda~pEv~leRI~k 376 (470)
.... + .+++||+++++. +|+...+..|.+.+.++..|.+++.++...+. ...||++|||++|++++++|+.+
T Consensus 68 ~~~~-~-~vi~d~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~ 144 (205)
T 2jaq_A 68 AKNL-E-NIIFDRTLLEDP-IFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKK 144 (205)
T ss_dssp -------CEEEESCTTTHH-HHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHH
T ss_pred hhcc-C-CEEEEeccchhH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHH
Confidence 3222 2 499999999874 56665566788889999999998887655441 13799999999999999999999
Q ss_pred hccccccCCcHHHHHHHHHHHHhhcCcCC-CCCeEEEEccCCCcccCCCCchHHHHHHHHhhh
Q 012135 377 RKRAEEGGVSLDYLRSLHEKHENWLFPFE-SGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDG 438 (470)
Q Consensus 377 RgR~~E~~i~~eYLe~L~e~Ye~w~~~~~-~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~ 438 (470)
|+|+.+...+.+|++++.+.|..++..+. .....+||++. +++++.+.|...+.
T Consensus 145 R~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~--------~~~~v~~~I~~~l~ 199 (205)
T 2jaq_A 145 RGRSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAEL--------DVKTQIELIMNKLN 199 (205)
T ss_dssp HTCHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTS--------CHHHHHHHHHHHHH
T ss_pred cCChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCC--------CHHHHHHHHHHHHH
Confidence 99887754445889999999998877664 44678899885 45777777766554
No 12
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=99.91 E-value=4.2e-25 Score=224.34 Aligned_cols=172 Identities=16% Similarity=0.138 Sum_probs=126.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCCCCccchhhhhhcCCCCC---------c----h
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERY---------A----Y 285 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~---------a----f 285 (470)
.++++|+|||+|||||||+++.|+++ |...+ +..++||+++|..+ .+++.|+.+|.++.+| + +
T Consensus 2 ~~~~fI~~EG~dGsGKTT~~~~La~~-L~~~g-v~~trEPg~~w~~~--~g~~~Lr~~yld~~r~~~~~~~~~ea~lf~~ 77 (331)
T 1e2k_A 2 PTLLRVYIDGPHGMGKTTTTQLLVAL-GSRDD-IVYVPEPMTYWRVL--GASETIANIYTTQHRLDQGEISAGDAAVVMT 77 (331)
T ss_dssp CEEEEEEECSCTTSSHHHHHHHHTC-----CC-EEEECCCHHHHHTT--SSSCHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHH-hhhCC-EEEEeCCCCccccc--ccHHHHHHHHhChhhhccccCCHHHHHHHHH
Confidence 35789999999999999999999997 77665 67899999988754 2457999999888655 4 3
Q ss_pred HHHHHHHHHHH----HHHHHhc---------CCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcC
Q 012135 286 TFQNYVFVTRV----MQERESS---------GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVL 352 (470)
Q Consensus 286 ~~Ql~Fla~R~----~ql~~~~---------~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~L 352 (470)
.+|++|+ +|+ .+..+.. ...+.+||+||+++|+.++|..+.|+.|.++..++..... .+. .
T Consensus 78 ~~qL~fa-~r~l~~a~r~~~~i~p~l~~~~~l~~g~~VI~DR~~~Ss~~~yq~~~~~~g~l~~~~~~~l~~---~~~-~- 151 (331)
T 1e2k_A 78 SAQITMG-MPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVA---LIP-P- 151 (331)
T ss_dssp HHHHHHH-HHHHHHHHHHGGGEEEECC----CCCSEEEEEECCHHHHHTHHHHHHHHTTSSCHHHHHHHHH---TCC-C-
T ss_pred HHHHHHH-hhhHHHHHHHHHHHhHHhhccccccCCCEEEEecCchHhHHHHHHHHHhcCCCCHHHHHHHHH---hcc-c-
Confidence 5666665 232 2222211 1246789999999999767887778888787665544321 111 1
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcC
Q 012135 353 PGLIPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLF 402 (470)
Q Consensus 353 p~lkPDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~ 402 (470)
...||+++|+++||+++++||++|||+.|. ++.+|+++|++.|..++.
T Consensus 152 -~~ppdlt~lldl~pe~~l~RI~~Rgr~~Er-i~~~yl~rvr~~Y~~l~~ 199 (331)
T 1e2k_A 152 -TLPGTNIVLGALPEDRHIDRLAKRQRPGER-LDLAMLAAIRRVYGLLAN 199 (331)
T ss_dssp -CCTTCEEEEEECCHHHHHHHHHHSCCTTCC-CCHHHHHHHHHHHHHHHH
T ss_pred -CCCCeEEEEEcCCHHHHHHHHHhcCCCccc-CCHHHHHHHHHHHHHHHH
Confidence 125689999999999999999999998776 689999999999997543
No 13
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.91 E-value=2.9e-24 Score=205.81 Aligned_cols=194 Identities=13% Similarity=0.113 Sum_probs=139.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCCCCccchhhhhhcCCC-CC-chHHHHHHHHHHHH
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPE-RY-AYTFQNYVFVTRVM 297 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~-r~-af~~Ql~Fla~R~~ 297 (470)
++++|+|||++||||||+++.|+++ |+.. ...+.||..+ ...+..++.++.++. .+ ..+.+++|+++|++
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~-l~~~--~~~~~ep~~~-----t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~ 75 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKK-LQPN--CKLLKFPERS-----TRIGGLINEYLTDDSFQLSDQAIHLLFSANRWE 75 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHH-HCSS--EEEEESSCTT-----SHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-hccc--ceEEEecCCC-----ChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999997 7762 4567788321 011335788887764 33 56778899999997
Q ss_pred HHHHhcC--CCCCeeeecceEeechhHHHHHHHHhcc-CChhhHHHHHhhHHHHhhcCCCCCCcEEEEE-eCCHHHHHHH
Q 012135 298 QERESSG--GIKPLRLMERSVFSDRMVFVRAVHEAKY-MNEMEISIYDSWFDPVVSVLPGLIPDGFIYL-RASPDTCHKR 373 (470)
Q Consensus 298 ql~~~~~--~~~~ivI~DRsI~SDryVFa~~~yesG~-Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyL-da~pEv~leR 373 (470)
+.....+ ..+.+||+||+++|+ .+|+.+. ++..++..+. .+...+| +||++||| |+||+++++|
T Consensus 76 ~~~~I~paL~~g~~VI~DRy~~S~------~ayq~~~~l~~~~~~~l~----~~~~~~~--~PDlti~L~dv~pe~~~~R 143 (216)
T 3tmk_A 76 IVDKIKKDLLEGKNIVMDRYVYSG------VAYSAAKGTNGMDLDWCL----QPDVGLL--KPDLTLFLSTQDVDNNAEK 143 (216)
T ss_dssp THHHHHHHHHTTCEEEEESCHHHH------HHHHHTTCCTTCCHHHHH----GGGTTSB--CCSEEEEEECSCCSCGGGC
T ss_pred HHHHHHHHHHcCCEEEEeccHhHH------HHHHHhcCCCHHHHHHHH----HHhhCCC--CCCEEEEEeCCCHHHHHHH
Confidence 4332211 224567777766655 4565432 4444444333 2333455 89999999 9999999999
Q ss_pred HHHhccccccCCcHHHHHHHHHHHHhhcCc---CCCCCeEEEE-ccCCCcccCCCCchHHHHHHHHhhhhhHHhh
Q 012135 374 MMLRKRAEEGGVSLDYLRSLHEKHENWLFP---FESGNHGVLA-VSKLPLHIDNGLHPDIRDRVFYLDGPHMHSS 444 (470)
Q Consensus 374 I~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~---~~~~~v~VID-vd~lD~~~~~~~~eev~d~V~~~I~~~L~~~ 444 (470)
+.+|++.+|. .+|++++++.|..|+.. +...++.+|| ++. +.+++.+.|.+.|.+.+...
T Consensus 144 ~~~~~dr~E~---~~f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~--------s~eeV~~~I~~~i~~~l~~~ 207 (216)
T 3tmk_A 144 SGFGDERYET---VKFQEKVKQTFMKLLDKEIRKGDESITIVDVTNK--------GIQEVEALIWQIVEPVLSTH 207 (216)
T ss_dssp CSSSCCTTCC---HHHHHHHHHHHHHHHHHHHHTTCCSEEEEECTTC--------CHHHHHHHHHHHHHHHHHSC
T ss_pred hccCcccccH---HHHHHHHHHHHHHHHHhccccCCCCEEEEeCCCC--------CHHHHHHHHHHHHHHHHhcc
Confidence 8766655663 69999999999999876 3446899999 665 67999999999888877643
No 14
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=99.90 E-value=2.2e-24 Score=219.79 Aligned_cols=174 Identities=13% Similarity=0.166 Sum_probs=129.0
Q ss_pred CCCcEEEEEcCCCCcHHHHH-HHHHHhhhcCCCceEeccCCccccccCCCCccchhhhhhcCCC-----CCc--------
Q 012135 219 KKRITFCVEGNISVGKTTFL-QRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPE-----RYA-------- 284 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLa-KlLAk~~L~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~-----r~a-------- 284 (470)
.++++|+|||++||||||++ +.|+++ ++..+.+.+++||++.|+... +++.|+.+|.++. +++
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~-l~~~g~vv~trEPgg~w~t~~--g~e~lr~i~l~~~~~~~~~~s~~~a~~~~ 86 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHF-AITPNRILLIGEPLSYWRNLA--GEDAICGIYGTQTRRLNGDVSPEDAQRLT 86 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTT-TTSGGGEEEECCCHHHHTTBT--TBCHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHH-HhhCCcEEEEeCCCccccCcc--cHHHHHHHHhchhhhcccccchhhhhHHH
Confidence 46899999999999999999 999997 766554678999999998642 3378888886532 333
Q ss_pred hHHHHHH------HHHHHHHHHHh--------cCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhh
Q 012135 285 YTFQNYV------FVTRVMQERES--------SGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVS 350 (470)
Q Consensus 285 f~~Ql~F------la~R~~ql~~~--------~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~ 350 (470)
+..|++| +++|+.+.... ....+.++|+||+++|+.++|..+.|..|.++..++.. ++.++..
T Consensus 87 ~e~ql~fa~p~~~la~R~~~h~~~~i~~~~~pal~~g~~VI~DR~~~Ss~a~f~~~r~~~g~l~~~~~~~---L~~~~~~ 163 (341)
T 1osn_A 87 AHFQSLFCSPHAIMHAKISALMDTSTSDLVQVNKEPYKIMLSDRHPIASTICFPLSRYLVGDMSPAALPG---LLFTLPA 163 (341)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTSCCCCSCCSCCCSSCCEEEEEESCTHHHHTHHHHHHHHHTSSCGGGHHH---HHTTCCC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhccccccccCCCCeEEEeCCccHHHHHHHhhhhhcCCCCHHHHHH---HHHhhhc
Confidence 5667776 66676542211 11235689999999999988987778889898877643 3333321
Q ss_pred cCCCCCCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcC
Q 012135 351 VLPGLIPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLF 402 (470)
Q Consensus 351 ~Lp~lkPDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~ 402 (470)
+..||++||||++|+++++||++|||+.|. ++.+|+++|++.|..++.
T Consensus 164 ---~~~PDltI~Ld~~pe~~l~RI~~RgR~~Er-ie~~yl~rvr~~Y~~l~~ 211 (341)
T 1osn_A 164 ---EPPGTNLVVCTVSLPSHLSRVSKRARPGET-VNLPFVMVLRNVYIMLIN 211 (341)
T ss_dssp ---CCSCCEEEEEECCHHHHHHHCC------CC-CCHHHHHHHHHHHHHHHH
T ss_pred ---CCCCCeEEEEeCCHHHHHHHHHhhCCCccc-CCHHHHHHHHHHHHHHHH
Confidence 347999999999999999999999998786 778999999999999765
No 15
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.90 E-value=4e-23 Score=200.36 Aligned_cols=198 Identities=14% Similarity=0.084 Sum_probs=132.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCc--eEeccCCccccccCCCCccchhhhhhc-CC--CCCchHHHH-H
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANETLELRDL--VEIVPEPIDKWQDVGPDHFNILGAYYD-AP--ERYAYTFQN-Y 290 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~--~Evv~EPv~~W~~i~~~~~~lL~~fY~-dp--~r~af~~Ql-~ 290 (470)
..|++++|+|||++||||||+++.|+++ |...++ ...++||.++ ..+..++.++. ++ ..+....+. +
T Consensus 23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~-l~~~~~~~~~~~rep~~t------~~g~~ir~~l~~~~~~~~~~~~~e~lL 95 (236)
T 3lv8_A 23 NAMNAKFIVIEGLEGAGKSTAIQVVVET-LQQNGIDHITRTREPGGT------LLAEKLRALVKEEHPGEELQDITELLL 95 (236)
T ss_dssp ---CCCEEEEEESTTSCHHHHHHHHHHH-HHHTTCCCEEEEESSCSS------HHHHHHHHHHHSCCTTSCCCHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH-HHhcCCCeeeeecCCCCC------HHHHHHHHHHhhCCCcccCCHHHHHHH
Confidence 5688999999999999999999999997 665543 3467888432 11234555553 33 345555554 6
Q ss_pred HHHHHHHHHHHhc---CCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCH
Q 012135 291 VFVTRVMQERESS---GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASP 367 (470)
Q Consensus 291 Fla~R~~ql~~~~---~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~p 367 (470)
|+++|++|+.... ...+.+||+||+++| ..+|+.. ..+.+.+.+..+..+.. .+| .||++|||++||
T Consensus 96 f~A~R~~~~~~~I~paL~~g~~VI~DRy~~S------~~AYq~~-~rgl~~~~i~~l~~~~~-~~~--~PDlvi~Ldv~~ 165 (236)
T 3lv8_A 96 VYAARVQLVENVIKPALARGEWVVGDRHDMS------SQAYQGG-GRQIAPSTMQSLKQTAL-GDF--KPDLTLYLDIDP 165 (236)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCEEEEESCHHH------HHHHTTT-TTCCCHHHHHHHHHHHH-TTC--CCSEEEEEECCH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEeeecch------HHhhhhh-ccCCCHHHHHHHHHHHh-cCC--CCCEEEEEeCCH
Confidence 8899998875431 122456666665554 4567632 12334445555444432 345 899999999999
Q ss_pred HHHHHHHHHhcc--ccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhhhhHH
Q 012135 368 DTCHKRMMLRKR--AEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMH 442 (470)
Q Consensus 368 Ev~leRI~kRgR--~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~~L~ 442 (470)
+++++|+.+|+. .+|. ...+|++++++.|..+...+. .+.+||++. +.+++.++|.+.+.+.|.
T Consensus 166 e~~~~Ri~~R~~~dr~E~-~~~~~~~rv~~~y~~la~~~~--~~~vIDa~~--------sieeV~~~I~~~l~~~l~ 231 (236)
T 3lv8_A 166 KLGLERARGRGELDRIEK-MDISFFERARERYLELANSDD--SVVMIDAAQ--------SIEQVTADIRRALQDWLS 231 (236)
T ss_dssp HHHHHC-----CCCTTTT-SCHHHHHHHHHHHHHHHHHCT--TEEEEETTS--------CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcchhhh-hHHHHHHHHHHHHHHHHHHCC--CEEEEeCCC--------CHHHHHHHHHHHHHHHHH
Confidence 999999999974 2343 357999999999999987654 389999886 678888888888776654
No 16
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.90 E-value=5.9e-24 Score=205.07 Aligned_cols=193 Identities=15% Similarity=-0.013 Sum_probs=131.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC----Cc-eEeccCCccccccCCCCccchhhhhhcCCCCCchHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELR----DL-VEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFV 293 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~----~~-~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~Fla 293 (470)
+++++|+|||++||||||+++.|+++ |... ++ +..++||.++ ..+..++.++.++.-.....+++|++
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~-l~~~~~~~g~~v~~~rep~~t------~~g~~ir~~l~~~~~~~~~~~llf~a 95 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDR-LQERLGPAGRHVVVTREPGGT------RLGETLREILLNQPMDLETEALLMFA 95 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHH-HHHHHGGGTCCEEEEESSSSS------HHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH-HHhhccccceeeeeecCCCCC------hHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 47999999999999999999999997 6543 32 3467888432 11345777777653334566788999
Q ss_pred HHHHHHHHhc---CCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHH
Q 012135 294 TRVMQERESS---GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTC 370 (470)
Q Consensus 294 ~R~~ql~~~~---~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~ 370 (470)
+|++|+.... ...+.+||+||+++| ..+|+.. ....+.+.+..+..+.. .+| .||++||||+||+++
T Consensus 96 ~R~~~~~~~i~p~l~~g~~VI~DRy~~S------~~ayq~~-~~gl~~~~~~~l~~~~~-~~~--~PDl~I~Ldv~~e~~ 165 (227)
T 3v9p_A 96 GRREHLALVIEPALARGDWVVSDRFTDA------TFAYQGG-GRGLPRDKLEALERWVQ-GGF--QPDLTVLFDVPPQIA 165 (227)
T ss_dssp HHHHHHHHTHHHHHHTTCEEEEECCHHH------HHHHHTT-TTCCCHHHHHHHHHHHH-TTC--CCSEEEEEECCSSCG
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeccHhH------HHHHhhh-ccCCCHHHHHHHHHHHh-cCC--CCCEEEEEeCCHHHH
Confidence 9998865421 122456666666555 4566632 11223344444444332 345 899999999999999
Q ss_pred HHHHHHhcc--ccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhh
Q 012135 371 HKRMMLRKR--AEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDG 438 (470)
Q Consensus 371 leRI~kRgR--~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~ 438 (470)
++|+.+|+. .+|. .+.+|++++++.|+.+...+. .++.+||++. +.+++.++|.+.+.
T Consensus 166 ~~Ri~~R~~~dr~E~-~~~ef~~rv~~~Y~~la~~~~-~~~~vIDa~~--------s~eeV~~~I~~~l~ 225 (227)
T 3v9p_A 166 SARRGAVRMPDKFES-ESDAFFARTRAEYLRRAQEAP-HRFVIVDSSE--------PIAQIRKQLEGVLA 225 (227)
T ss_dssp GGTTTCCCCC---CC-HHHHHHHHHHHHHHHHHHHCT-TTEEEEETTS--------CHHHHHHHHHHHHH
T ss_pred HHHHHhccCccchhh-hhHHHHHHHHHHHHHHHHHhc-CCEEEEeCCC--------CHHHHHHHHHHHHH
Confidence 999999862 2332 247999999999999987663 5799999986 67888888776654
No 17
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.84 E-value=1.4e-20 Score=180.21 Aligned_cols=195 Identities=14% Similarity=0.061 Sum_probs=127.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCc-eEeccCCccccccCCCCccchhhhhhcCCCCCch-HHHHHHHHHH
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAY-TFQNYVFVTR 295 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~-~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af-~~Ql~Fla~R 295 (470)
..++++|+|+|++||||||+++.|++. ++. ++ +..+.||..+ ..+..++.++.++..+.. ...++|+++|
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~-l~~-~~~~~~~~~p~~~------~~g~~i~~~~~~~~~~~~~~~~ll~~a~r 94 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHR-LVK-DYDVIMTREPGGV------PTGEEIRKIVLEGNDMDIRTEAMLFAASR 94 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHH-HTT-TSCEEEECTTTTC------HHHHHHHHHTTC---CCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH-Hhc-CCCceeecCCCCC------chHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999997 765 32 3356777543 123456777776654443 3445678888
Q ss_pred HHHHHHhc---CCCCCeeeecceEeechhHHHHHHHHhc--cCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHH
Q 012135 296 VMQERESS---GGIKPLRLMERSVFSDRMVFVRAVHEAK--YMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTC 370 (470)
Q Consensus 296 ~~ql~~~~---~~~~~ivI~DRsI~SDryVFa~~~yesG--~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~ 370 (470)
+.++.+.. ...+.++++||+++|+ .+|+.. .+....+..+.. +....+ .||++|||++|++++
T Consensus 95 ~~~~~~~i~~~l~~g~~Vi~DRy~~s~------~ayqg~~r~~~~~~~~~l~~----~~~~~~--~pd~vi~L~~~~e~~ 162 (229)
T 4eaq_A 95 REHLVLKVIPALKEGKVVLCDRYIDSS------LAYQGYARGIGVEEVRALNE----FAINGL--YPDLTIYLNVSAEVG 162 (229)
T ss_dssp HHHCCCCCHHHHHTTCEEEEECCHHHH------CCCCCCCSCSCHHHHHHHHH----HHHTTC--CCSEEEEEECCHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEECCchhHH------HHHHHhhcCCCHHHHHHHHH----HHhcCC--CCCEEEEEeCCHHHH
Confidence 87642110 0123566666666554 455421 233332222222 222333 899999999999999
Q ss_pred HHHHHHhccccccC--CcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhhhhH
Q 012135 371 HKRMMLRKRAEEGG--VSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHM 441 (470)
Q Consensus 371 leRI~kRgR~~E~~--i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~~L 441 (470)
++|+.+|++..+.. .+.+|++++++.|+.+...+. ..+.+||++. +++++.++|.+.+...|
T Consensus 163 ~~R~~~R~~~~dr~e~~~~~~~~rv~~~y~~l~~~~~-~~~~vIDa~~--------s~eev~~~I~~~l~~~l 226 (229)
T 4eaq_A 163 RERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNES-QRFKSVNADQ--------PLENVVEDTYQTIIKYL 226 (229)
T ss_dssp HHHHHHC-----CCCHHHHHHHHHHHHHHHHHTTTCT-TTEEEEETTS--------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCccchhhhhHHHHHHHHHHHHHHHHhCC-CCEEEEeCCC--------CHHHHHHHHHHHHHHHh
Confidence 99999997643321 256899999999999987654 5688999875 67888888888777654
No 18
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.80 E-value=1.3e-18 Score=158.28 Aligned_cols=188 Identities=18% Similarity=0.063 Sum_probs=116.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhh---cCCCceEeccCCccccccCCCCccchhhhhhcCCCCCchHHHHHHHHHHHHH
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETL---ELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQ 298 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L---~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~Fla~R~~q 298 (470)
|+|+|+|++||||||+++.|++. + +.. +..+.||... ..+..++.++.+..-......++|.++|+.+
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~-l~~~g~~--v~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 71 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQY-LEKRGKK--VILKREPGGT------ETGEKIRKILLEEEVTPKAELFLFLASRNLL 71 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH-HHHCCC---EEEEESSCSS------HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HHHCCCe--EEEeeCCCCC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999997 6 433 3356676432 1123455555432222334555677888877
Q ss_pred HHHhcC--CCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHHHHHH
Q 012135 299 ERESSG--GIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMML 376 (470)
Q Consensus 299 l~~~~~--~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~leRI~k 376 (470)
.....+ ..+..+++|| |+++..+|+.+ ....+......+..+. ...+ .||++|||++|++++++|+.+
T Consensus 72 ~~~i~~~l~~g~~vi~dr------~~~s~~~~~~~-~~~~~~~~~~~~~~~~-~~~~--~~d~vi~l~~~~e~~~~Rl~~ 141 (197)
T 2z0h_A 72 VTEIKQYLSEGYAVLLDR------YTDSSVAYQGF-GRNLGKEIVEELNDFA-TDGL--IPDLTFYIDVDVETALKRKGE 141 (197)
T ss_dssp HHHHTTC----CEEEEES------CHHHHHHHTTT-TTCSCHHHHHHHHHHH-HTTC--CCSEEEEEECCHHHHHHHC--
T ss_pred HHHHHHHHhCCCEEEECC------ChhHHHHHHHh-ccCCCHHHHHHHHHHh-cCCC--CCCEEEEEeCCHHHHHHHHhc
Confidence 655221 1233455555 44555566532 2222333333333222 2333 799999999999999999999
Q ss_pred hccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhhhhH
Q 012135 377 RKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHM 441 (470)
Q Consensus 377 RgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~~L 441 (470)
|++. +. .++++++...|..+...+. ..+.+||++. +.+++.+.|...+...+
T Consensus 142 R~~~-~~---~~~~~~~~~~~~~~~~~~~-~~~~~Id~~~--------~~e~~~~~i~~~l~~~l 193 (197)
T 2z0h_A 142 LNRF-EK---REFLERVREGYLVLAREHP-ERIVVLDGKR--------SIEEIHRDVVREVKRRW 193 (197)
T ss_dssp -CCC-CC---HHHHHHHHHHHHHHHHHCT-TTEEEEETTS--------CHHHHHHHHHHHTTCC-
T ss_pred cCcc-cH---HHHHHHHHHHHHHHHHhCC-CCEEEEeCCC--------CHHHHHHHHHHHHHHHh
Confidence 9653 22 2899999999999876553 4678899774 56888888877766543
No 19
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.77 E-value=7.5e-18 Score=154.38 Aligned_cols=187 Identities=17% Similarity=0.168 Sum_probs=117.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCCCCccchhhhhhcCCC---CCch-HHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPE---RYAY-TFQNYVFVT 294 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~---r~af-~~Ql~Fla~ 294 (470)
|++++|+|+|++||||||+++.|+++ ++..+-+..+.+|.+ ..++.++.++. .+.. ..+++|..+
T Consensus 2 m~~~~I~i~G~~GsGKsT~~~~L~~~-l~~~g~~~~~~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQATLLKDW-IELKRDVYLTEWNSS----------DWIHDIIKEAKKKDLLTPLTFSLIHATD 70 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH-HTTTSCEEEEETTCC----------CHHHHHHHHHTTTSCCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH-HhhcCCEEEecCCcH----------HHHHHHHhccccccCCCHHHHHHHHHHH
Confidence 56899999999999999999999997 776431233455532 34555554322 2332 234455667
Q ss_pred HHHHHHHh---cCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHH
Q 012135 295 RVMQERES---SGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCH 371 (470)
Q Consensus 295 R~~ql~~~---~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~l 371 (470)
|+.++... ....+..+|+||++++. .+|+.+. ..+...+. .+...++ .||++|||++|+++++
T Consensus 71 r~~~~~~~i~~~l~~g~~vi~D~~~~~~------~~~~~~~--~~~~~~~~----~l~~~~~--~~~~vi~l~~~~e~~~ 136 (213)
T 2plr_A 71 FSDRYERYILPMLKSGFIVISDRYIYTA------YARDSVR--GVDIDWVK----KLYSFAI--KPDITFYIRVSPDIAL 136 (213)
T ss_dssp HHHHHHHTHHHHHHTTCEEEEESCHHHH------HHHHHTT--TCCHHHHH----HHTTTSC--CCSEEEEEECCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcHhHH------HHHHHhh--CCCHHHHH----HHHhcCC--CCCEEEEEeCCHHHHH
Confidence 77654221 00124567777777654 3344221 12222333 3333344 6999999999999999
Q ss_pred HHHH-Hhcc--ccccC---------C--cHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhh
Q 012135 372 KRMM-LRKR--AEEGG---------V--SLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLD 437 (470)
Q Consensus 372 eRI~-kRgR--~~E~~---------i--~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I 437 (470)
+|+. +|+. ..+.+ . ..+|++++...|..+...+ .+.+||++. +++++.+.|...+
T Consensus 137 ~Rl~~~R~~~~~~~~g~~~~~~~d~~e~~~~~~~r~~~~~~~~~~~~---~~~~Id~~~--------~~e~v~~~I~~~l 205 (213)
T 2plr_A 137 ERIKKSKRKIKPQEAGADIFPGLSPEEGFLKYQGLITEVYDKLVKDE---NFIVIDGTK--------TPKEIQIQIRKFV 205 (213)
T ss_dssp HHHHHTTCCCCTTTTTTTTCTTSCHHHHHHHHHHHHHHHHHHHTTTT---TCEEEETTS--------CHHHHHHHHHHHH
T ss_pred HHHhcccccccccccccccccccchhhhHHHHHHHHHHHHHHHHhhC---CEEEEECCC--------CHHHHHHHHHHHH
Confidence 9999 8872 21000 0 1478889999999987654 578999874 5688888888777
Q ss_pred hhhH
Q 012135 438 GPHM 441 (470)
Q Consensus 438 ~~~L 441 (470)
...+
T Consensus 206 ~~~~ 209 (213)
T 2plr_A 206 GELI 209 (213)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6544
No 20
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.74 E-value=4.9e-17 Score=146.94 Aligned_cols=186 Identities=15% Similarity=0.123 Sum_probs=112.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCCCc-eEeccCCccccccCCCCccchhhhhhcCCCCCchHH-HHHHHHHHHHHH
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTF-QNYVFVTRVMQE 299 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~-~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~-Ql~Fla~R~~ql 299 (470)
|+|+|+|++||||||+++.|+++ +...++ +..+.||... ..+..+..++.+. .+.+.. ..++..+|+.++
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~-l~~~g~~~i~~d~~~~~------~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~l 72 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEY-LKQKGYFVSLYREPGGT------KVGEVLREILLTE-ELDERTELLLFEASRSKLI 72 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHH-HHHTTCCEEEEESSCSS------HHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HHHCCCeEEEEeCCCCC------chHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999999997 622221 2334555321 0112344445433 333332 234455666554
Q ss_pred HHhc---CCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHHHHHH
Q 012135 300 RESS---GGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMML 376 (470)
Q Consensus 300 ~~~~---~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~leRI~k 376 (470)
.... ...+..+++||++++. ..|+ |.....+...+..+..++... ..||++|||++|++++++|+.+
T Consensus 73 ~~~i~~~l~~~~~vi~dr~~~~~------~~~~-g~~~~~~~~~~~~~~~~~~~~---~~~d~vi~l~~~~e~~~~Rl~~ 142 (195)
T 2pbr_A 73 EEKIIPDLKRDKVVILDRFVLST------IAYQ-GYGKGLDVEFIKNLNEFATRG---VKPDITLLLDIPVDIALRRLKE 142 (195)
T ss_dssp HHTHHHHHHTTCEEEEESCHHHH------HHHH-TTTTCCCHHHHHHHHHHHHTT---CCCSEEEEEECCHHHHHHHHHT
T ss_pred HHHHHHHHhCCCEEEECcchhHH------HHHc-cccCCCCHHHHHHHHHHhhcC---CCCCEEEEEeCCHHHHHHHhhc
Confidence 3211 0123456666665543 3444 322222333333332222211 2689999999999999999997
Q ss_pred hccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhhh
Q 012135 377 RKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGP 439 (470)
Q Consensus 377 RgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~ 439 (470)
|++. + ..++++++.+.|+.+...+ ..+.+||++. +.+++.+.|.+.+..
T Consensus 143 r~~~-~---~~~~~~~~~~~~~~~~~~~--~~~~~Id~~~--------~~~~~~~~i~~~l~~ 191 (195)
T 2pbr_A 143 KNRF-E---NKEFLEKVRKGFLELAKEE--ENVVVIDASG--------EEEEVFKEILRALSG 191 (195)
T ss_dssp TTCC-C---CHHHHHHHHHHHHHHHHHS--TTEEEEETTS--------CHHHHHHHHHHHHHT
T ss_pred cCcc-c---hHHHHHHHHHHHHHHHhhC--CCEEEEECCC--------CHHHHHHHHHHHHHH
Confidence 7652 2 5679999999999987654 3578888864 567777777665543
No 21
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.69 E-value=3.1e-16 Score=143.50 Aligned_cols=186 Identities=12% Similarity=0.090 Sum_probs=115.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhh-cCCCceEeccCCc-cccccCCCCccchhhhhhcCCCCCc-hHHHHHHHHHHH
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETL-ELRDLVEIVPEPI-DKWQDVGPDHFNILGAYYDAPERYA-YTFQNYVFVTRV 296 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L-~~~~~~Evv~EPv-~~W~~i~~~~~~lL~~fY~dp~r~a-f~~Ql~Fla~R~ 296 (470)
++++|+|+|++||||||+++.|+++ + +.. +..+.||+ ..+. +..++.++.+...+. ...+++|.++|+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~-l~g~~--~~~~~~~~~~~~~------g~~i~~~~~~~~~~~~~~~~~l~~~~r~ 73 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES-IPANT--IKYLNFPQRSTVT------GKMIDDYLTRKKTYNDHIVNLLFCANRW 73 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT-SCGGG--EEEEESSCTTSHH------HHHHHHHHTSSCCCCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH-HCCCc--eEEEecCCCCCcH------HHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999997 6 222 33456664 2211 234555554332222 223555666776
Q ss_pred HHHHHh--cCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHHHH
Q 012135 297 MQERES--SGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRM 374 (470)
Q Consensus 297 ~ql~~~--~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~leRI 374 (470)
.+.... ....+..+++||++++. .+|+.|. ..+.+.+ ..+....+ .||++|||++|++++++
T Consensus 74 ~~~~~i~~~l~~~~~vi~Dr~~~s~------~~~~~~~--g~~~~~~----~~~~~~~~--~~d~vi~l~~~~e~~~~-- 137 (204)
T 2v54_A 74 EFASFIQEQLEQGITLIVDRYAFSG------VAYAAAK--GASMTLS----KSYESGLP--KPDLVIFLESGSKEINR-- 137 (204)
T ss_dssp TTHHHHHHHHHTTCEEEEESCHHHH------HHHHHHT--TCCHHHH----HHHHTTSB--CCSEEEEECCCHHHHTT--
T ss_pred HHHHHHHHHHHCCCEEEEECchhhH------HHHHHcc--CCCHHHH----HHHhcCCC--CCCEEEEEeCCHHHHHh--
Confidence 442111 00124577888877665 2333322 1122222 22332333 79999999999999988
Q ss_pred HHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhhhhHH
Q 012135 375 MLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMH 442 (470)
Q Consensus 375 ~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~~L~ 442 (470)
+|+.+.. ...+|+++++..|..+...+. ..+.+||++. +.+++.+.|.+.+.+.+.
T Consensus 138 -~R~~d~~--e~~~~~~rl~~~y~~~~~~~~-~~~~~Id~~~--------~~~~v~~~i~~~l~~~l~ 193 (204)
T 2v54_A 138 -NVGEEIY--EDVTFQQKVLQEYKKMIEEGD-IHWQIISSEF--------EEDVKKELIKNIVIEAIH 193 (204)
T ss_dssp -CCSSSTT--CCSHHHHHHHHHHHHHHTTCS-SCEEEECTTS--------CHHHHHHHHHHHHHHHHH
T ss_pred -hcCcccc--cHHHHHHHHHHHHHHHHHhCC-CcEEEEECCC--------CHHHHHHHHHHHHHHHHh
Confidence 5653321 124789999999999876543 3578888764 668899999888877665
No 22
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.68 E-value=1e-15 Score=140.93 Aligned_cols=191 Identities=15% Similarity=0.163 Sum_probs=113.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCc-eEeccCCccccccCCCCccchhhhhhcCCCCCc-hHHHHHHHHHHHH
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAYYDAPERYA-YTFQNYVFVTRVM 297 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~-~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~a-f~~Ql~Fla~R~~ 297 (470)
++++|+|+|++||||||+++.|+++ ++..++ +..+.||... ...+..++.++.+...+. .....+|..+|+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~-l~~~~~~v~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~ 81 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA-LCAAGHRAELLRFPERS-----TEIGKLLSSYLQKKSDVEDHSVHLLFSANRWE 81 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH-HHHTTCCEEEEESSCTT-----SHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHHcCCcEEEeeCCCCC-----CcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999999997 665442 2345555310 001223455554322221 2233455566654
Q ss_pred HH---HHhcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHHHH
Q 012135 298 QE---RESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRM 374 (470)
Q Consensus 298 ql---~~~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~leRI 374 (470)
++ .... ..+..+++||++++. ..|..+.. ..+.+ |...+...++ .||++|||++|++++++|+
T Consensus 82 ~~~~i~~~l-~~~~~vi~dr~~~s~------~~~~~~~~-~~~~~----~~~~l~~~~~--~~d~vi~l~~~~e~~~~Rl 147 (215)
T 1nn5_A 82 QVPLIKEKL-SQGVTLVVDRYAFSG------VAFTGAKE-NFSLD----WCKQPDVGLP--KPDLVLFLQLQLADAAKRG 147 (215)
T ss_dssp THHHHHHHH-HTTCEEEEESCHHHH------HHHHHTST-TCCHH----HHHGGGTTSB--CCSEEEEEECCHHHHHHC-
T ss_pred HHHHHHHHH-HCCCEEEEeCCcccH------HHHHhhcC-CCCHH----HHHHHHhCCC--CCCEEEEEeCCHHHHHHHh
Confidence 32 1111 124567777776655 23333210 11111 2222322333 7899999999999999999
Q ss_pred HHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhhhhHH
Q 012135 375 MLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMH 442 (470)
Q Consensus 375 ~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~~L~ 442 (470)
.+|....+ ..++++++...|..+...+. ..+.+||++. +.+++.+.|...+...+.
T Consensus 148 ~r~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~Id~~~--------~~e~~~~~i~~~l~~~l~ 203 (215)
T 1nn5_A 148 AFGHERYE---NGAFQERALRCFHQLMKDTT-LNWKMVDASK--------SIEAVHEDIRVLSEDAIA 203 (215)
T ss_dssp ----CTTC---SHHHHHHHHHHHHHHTTCTT-SCEEEEETTS--------CHHHHHHHHHHHHHHHHH
T ss_pred ccCccccc---hHHHHHHHHHHHHHHHHhCC-CCEEEEECCC--------CHHHHHHHHHHHHHHHHh
Confidence 75422222 35788999999999876542 4578888763 568888888888776554
No 23
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=99.65 E-value=4.1e-17 Score=150.44 Aligned_cols=189 Identities=15% Similarity=0.120 Sum_probs=114.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCCCc-eEeccCCccccccCCCCccchhhhhhcCC----CCCchHHHHHHHHHHH
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAYYDAP----ERYAYTFQNYVFVTRV 296 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~-~Evv~EPv~~W~~i~~~~~~lL~~fY~dp----~r~af~~Ql~Fla~R~ 296 (470)
++|+|+|++||||||+++.|++. ++..++ +..+.||...+. .....++.+..+. ....+..+++|.++|+
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~-l~~~g~~v~~~~~~~~~~~----~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~ 75 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGA-FRAAGRSVATLAFPRYGQS----VAADIAAEALHGEHGDLASSVYAMATLFALDRA 75 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHH-HHEEEEEEEEEESSEEEEE----EEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH-HHhcCCeEEEEeecCCCCc----chhhHHHHHHcccccccCCCHhHHHHHHHHHHh
Confidence 58999999999999999999997 654432 223556531100 0012233222110 0134556667777877
Q ss_pred HHHHHh--cCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHh---hcCCCCCCcEEEEEeCCHHHHH
Q 012135 297 MQERES--SGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVV---SVLPGLIPDGFIYLRASPDTCH 371 (470)
Q Consensus 297 ~ql~~~--~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~---~~Lp~lkPDLvIyLda~pEv~l 371 (470)
.+.... ....+.++|+||+++++ .+|+.+.+.+.++..|.+|+..+. ..+| .||++|||++|+++++
T Consensus 76 ~~~~~i~~~l~~g~~vi~D~~~~s~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~i~l~~~~~~~~ 147 (214)
T 1gtv_A 76 GAVHTIQGLCRGYDVVILDRYVASN------AAYSAARLHENAAGKAAAWVQRIEFARLGLP--KPDWQVLLAVSAELAG 147 (214)
T ss_dssp EEHHHHHHEEEEEEEEEEEEEEHHH------HHHHHHHEEEEEEEHHHHHHHHHHEEEEECC--BCEEEEEEEEEHHHHH
T ss_pred hhHHHHHHHhhCCCEEEECCCcccc------hhhhhcccCccccHHHHHHHHhcccccccCC--CCCEEEEEeCCHHHHH
Confidence 541111 11124567888887765 234433232233445556555543 1344 7999999999999999
Q ss_pred HHHHHhccc--------cccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHH
Q 012135 372 KRMMLRKRA--------EEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRV 433 (470)
Q Consensus 372 eRI~kRgR~--------~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V 433 (470)
+|+.+|+.. .|. ..+|++++...|..+...+...++.+||++. +.+++.+.|
T Consensus 148 ~R~~~R~~~~~~~~~d~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~vId~~~--------~~~~v~~~i 207 (214)
T 1gtv_A 148 ERSRGRAQRDPGRARDNYER--DAELQQRTGAVYAELAAQGWGGRWLVVGADV--------DPGRLAATL 207 (214)
T ss_dssp HHHHHHHHEBBEEEEEEEEE--EHHHHHHHHHHHHHHHHEEEEEEEEEEEEEE--------BHHHHHHHH
T ss_pred HHHHcccccccccccccccc--cHHHHHHHHHHHHHHHHhCCCCCEEEEeCCC--------CHHHHHHHh
Confidence 999998652 232 3689999999999987644213568888874 345555554
No 24
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.61 E-value=2.7e-15 Score=138.02 Aligned_cols=187 Identities=15% Similarity=0.132 Sum_probs=109.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCc-eEeccCCccccccCCCCccchhhhhhcCCCCCc-hHHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAYYDAPERYA-YTFQNYVFVTRV 296 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~-~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~a-f~~Ql~Fla~R~ 296 (470)
+++++|+|+|++||||||+++.|+++ ++..++ ...+.||... ...+..++.++.+...+. ...+..|..+|.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~-l~~~~~~~~~~~~~~~~-----~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 81 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY-LKNNNVEVKHLYFPNRE-----TGIGQIISKYLKMENSMSNETIHLLFSANRW 81 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH-HHHTTCCEEEEESSCTT-----SHHHHHHHHHHTTSSCCCHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH-HHHcCCcEEEEecCCCC-----CcHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999997 665432 2345565211 001123444554332222 123344555554
Q ss_pred HHHH---HhcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHHH
Q 012135 297 MQER---ESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKR 373 (470)
Q Consensus 297 ~ql~---~~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~leR 373 (470)
.++. ... ..+..+++||++.+. .+|+.... ..+. .|+..+...++ .||++|||++|++++++|
T Consensus 82 ~~~~~i~~~l-~~~~~vi~D~~~~~~------~~~~~~~~-~~~~----~~l~~~~~~~~--~~d~vi~l~~~~e~~~~R 147 (212)
T 2wwf_A 82 EHMNEIKSLL-LKGIWVVCDRYAYSG------VAYSSGAL-NLNK----TWCMNPDQGLI--KPDVVFYLNVPPNYAQNR 147 (212)
T ss_dssp TTHHHHHHHH-HHTCEEEEECCHHHH------HHHHHHHS-CCCH----HHHHGGGTTSB--CCSEEEEEECCTTGGGGS
T ss_pred HHHHHHHHHH-hCCCEEEEecchhhH------HHHHHhcc-CCCH----HHHHHHhhCCC--CCCEEEEEeCCHHHHHHh
Confidence 3221 111 113456777766544 22322110 1111 12212222333 799999999999999999
Q ss_pred HHHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhhh
Q 012135 374 MMLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGP 439 (470)
Q Consensus 374 I~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~ 439 (470)
+.+|....+ ..+++++++..|..+.. .....+||++. +.+++.+.|.+.+..
T Consensus 148 l~~r~~r~~---~~~~~~~~~~~~~~~~~---~~~~~~Id~~~--------~~~~~~~~i~~~l~~ 199 (212)
T 2wwf_A 148 SDYGEEIYE---KVETQKKIYETYKHFAH---EDYWINIDATR--------KIEDIHNDIVKEVTK 199 (212)
T ss_dssp TTTTSSTTC---SHHHHHHHHHHGGGGTT---CTTEEEEECSS--------CHHHHHHHHHHHHTT
T ss_pred hccCccccc---HHHHHHHHHHHHHHHhc---cCCEEEEECCC--------CHHHHHHHHHHHHHH
Confidence 976532233 36788999999988765 34578888873 567787777766543
No 25
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.61 E-value=1.9e-14 Score=127.55 Aligned_cols=164 Identities=15% Similarity=0.110 Sum_probs=101.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCCCCccchhhhhhcCCCCCchHHHHHHHHHHHHHHHH
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQERE 301 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~Fla~R~~ql~~ 301 (470)
++|+|+|++||||||+++.|++. ++.. ++..+ .+..... . .+..| .....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~-l~~~----~i~~d------------~~~~~~~-------~-~~~~~-----~~~~~ 51 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE-LKYP----IIKGS------------SFELAKS-------G-NEKLF-----EHFNK 51 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH-HCCC----EEECC------------CHHHHTT-------C-HHHHH-----HHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-hCCe----eecCc------------ccccchh-------H-HHHHH-----HHHHH
Confidence 48999999999999999999987 6643 12111 1111100 0 11111 11111
Q ss_pred hcCCCCCeeeecceEeechhHHHHHHHHhccC-ChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHHHHHHhccc
Q 012135 302 SSGGIKPLRLMERSVFSDRMVFVRAVHEAKYM-NEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRKRA 380 (470)
Q Consensus 302 ~~~~~~~ivI~DRsI~SDryVFa~~~yesG~L-s~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~leRI~kRgR~ 380 (470)
.. .+..++.||++++ ..+|+.+.. .......+... +...++ .||++|||++|++++++|+.+|+++
T Consensus 52 l~--~~~~vi~dr~~~~------~~v~~~~~~~~~~~~~~~~~~---l~~~~~--~~~~~i~l~~~~e~~~~R~~~r~r~ 118 (173)
T 3kb2_A 52 LA--DEDNVIIDRFVYS------NLVYAKKFKDYSILTERQLRF---IEDKIK--AKAKVVYLHADPSVIKKRLRVRGDE 118 (173)
T ss_dssp HT--TCCSEEEESCHHH------HHHHTTTBTTCCCCCHHHHHH---HHHHHT--TTEEEEEEECCHHHHHHHHHHHSCS
T ss_pred HH--hCCCeEEeeeecc------hHHHHHHHHHhhHhhHHHHHH---HhccCC--CCCEEEEEeCCHHHHHHHHHhcCCc
Confidence 11 1345677776654 344542210 01111112222 222233 7899999999999999999999876
Q ss_pred cccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhhh
Q 012135 381 EEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGP 439 (470)
Q Consensus 381 ~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~ 439 (470)
.+. .++++++.+.|+.+...+. ....+||++.. +++++.++|...++.
T Consensus 119 ~~~---~~~~~~~~~~~~~~~~~~~-~~~~~id~~~~-------~~~ev~~~I~~~~~~ 166 (173)
T 3kb2_A 119 YIE---GKDIDSILELYREVMSNAG-LHTYSWDTGQW-------SSDEIAKDIIFLVEL 166 (173)
T ss_dssp CCC---HHHHHHHHHHHHHHHHTCS-SCEEEEETTTS-------CHHHHHHHHHHHHHH
T ss_pred chh---hhHHHHHHHHHHHHHhhcC-CCEEEEECCCC-------CHHHHHHHHHHHHhC
Confidence 553 5789999999999877765 46788888742 568888887776665
No 26
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.48 E-value=1.4e-13 Score=123.82 Aligned_cols=178 Identities=12% Similarity=0.091 Sum_probs=98.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCCCc-eEeccCCccccccCCCCccchh-hhhhcCC----CCCchH--HHH-HHH
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNIL-GAYYDAP----ERYAYT--FQN-YVF 292 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~-~Evv~EPv~~W~~i~~~~~~lL-~~fY~dp----~r~af~--~Ql-~Fl 292 (470)
++|+|+|++||||||+++.|+++ ++..++ +..+ +++.+. ...+ +..+... ..+... .+. .++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~-l~~~g~~~~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI-LDNQGINNKII--NYGDFM------LATALKLGYAKDRDEMRKLSVEKQKKLQIDA 72 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH-HHTTTCCEEEE--EHHHHH------HHHHHTTTSCSSHHHHTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHhcCceEEEE--ECChHH------HHHHHhcccccchhhhhcCCHHHHHHHHHHH
Confidence 58999999999999999999997 664332 1222 211110 0000 1111110 123222 111 234
Q ss_pred HHHHHHHHHhcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHH
Q 012135 293 VTRVMQERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHK 372 (470)
Q Consensus 293 a~R~~ql~~~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~le 372 (470)
++|+...... ..+..+|+|++. +- .++.|.+...+...+.. + .||++|||++|++++++
T Consensus 73 ~~~i~~~l~~--~~~~~vi~d~~~-~~-------~~~~~~~~~~~~~~~~~--------~---~~~~vi~l~~~~~~~~~ 131 (194)
T 1nks_A 73 AKGIAEEARA--GGEGYLFIDTHA-VI-------RTPSGYLPGLPSYVITE--------I---NPSVIFLLEADPKIILS 131 (194)
T ss_dssp HHHHHHHHHH--TCSSEEEEEECS-EE-------EETTEEEESSCHHHHHH--------H---CCSEEEEEECCHHHHHH
T ss_pred HHHHHHHhhc--cCCCEEEECCch-hh-------ccccccccCCCHHHHHh--------c---CCCEEEEEeCCHHHHHH
Confidence 4554433210 124678888871 11 12223222222222211 1 47999999999999996
Q ss_pred H-HHH--hcc-ccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEE-EccCCCcccCCCCchHHHHHHHHhh
Q 012135 373 R-MML--RKR-AEEGGVSLDYLRSLHEKHENWLFPFESGNHGVL-AVSKLPLHIDNGLHPDIRDRVFYLD 437 (470)
Q Consensus 373 R-I~k--RgR-~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VI-Dvd~lD~~~~~~~~eev~d~V~~~I 437 (470)
| +.+ |++ +.+.....++++++...|..+...+....+.+| |.+. +++++.++|.+.+
T Consensus 132 rr~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~d~~~--------~~e~v~~~I~~~l 193 (194)
T 1nks_A 132 RQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEG--------DPSIAANEIIRSM 193 (194)
T ss_dssp HHHHCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCSS--------CHHHHHHHHHHHH
T ss_pred HHHhhcccCCCCccCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCC--------CHHHHHHHHHHHh
Confidence 6 888 887 332222346778899999988765423456777 6653 5677777776543
No 27
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.45 E-value=1.1e-12 Score=118.09 Aligned_cols=184 Identities=13% Similarity=0.114 Sum_probs=92.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCceE---eccCCccccccCCCCccchhhhhhcCCCCCchHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDLVE---IVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTR 295 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~E---vv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~Fla~R 295 (470)
|++++|+|+|++||||||+++.|++. ++... +. .+.+.... . ....+..++.++.+..-.........+..+
T Consensus 1 M~~~~I~l~G~~GsGKsT~a~~L~~~-~~~~~-i~~d~~~~~~~~~--~-~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~ 75 (196)
T 1tev_A 1 MKPLVVFVLGGPGAGKGTQCARIVEK-YGYTH-LSAGELLRDERKN--P-DSQYGELIEKYIKEGKIVPVEITISLLKRE 75 (196)
T ss_dssp --CEEEEEECCTTSSHHHHHHHHHHH-HCCEE-EEHHHHHHHHHHC--T-TSTTHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH-hCCeE-EeHHHHHHHHHhc--c-CChHHHHHHHHHHCCCcCCHHHHHHHHHHH
Confidence 57899999999999999999999987 66432 11 01110000 0 000112333333322111111111112222
Q ss_pred HHHHHHhcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHHHHH
Q 012135 296 VMQERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMM 375 (470)
Q Consensus 296 ~~ql~~~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~leRI~ 375 (470)
+....... ..+..+|+|+++.+.. . +..|...+. .. ..||++|||++|++++++|+.
T Consensus 76 ~~~~~~~~-~~~~~vi~dg~~~~~~------~-------------~~~~~~~~~-~~--~~~~~~i~l~~~~e~~~~R~~ 132 (196)
T 1tev_A 76 MDQTMAAN-AQKNKFLIDGFPRNQD------N-------------LQGWNKTMD-GK--ADVSFVLFFDCNNEICIERCL 132 (196)
T ss_dssp HHHHHHHC-TTCCEEEEESCCCSHH------H-------------HHHHHHHHT-TT--CEEEEEEEEECCHHHHHHHHH
T ss_pred HHhhhccc-cCCCeEEEeCCCCCHH------H-------------HHHHHHHhc-cc--CCCCEEEEEECCHHHHHHHHH
Confidence 22222211 2245778888776431 0 111111222 12 268999999999999999999
Q ss_pred Hhcccccc-CCcHHHHHHHHHHHHhhcC----cCC-CCCeEEEEccCCCcccCCCCchHHHHHHHHhhh
Q 012135 376 LRKRAEEG-GVSLDYLRSLHEKHENWLF----PFE-SGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDG 438 (470)
Q Consensus 376 kRgR~~E~-~i~~eYLe~L~e~Ye~w~~----~~~-~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~ 438 (470)
+|+..... ..+.+.+++....|..... .|. ...+.+||++. +++++.+.|.+.+.
T Consensus 133 ~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~~--------~~~~v~~~i~~~l~ 193 (196)
T 1tev_A 133 ERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASK--------SVDEVFDEVVQIFD 193 (196)
T ss_dssp HHHHTSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTS--------CHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEECCC--------CHHHHHHHHHHHHH
Confidence 88532111 1123444333333333221 111 13466888874 56888888776654
No 28
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=99.42 E-value=5.3e-13 Score=134.08 Aligned_cols=163 Identities=14% Similarity=0.106 Sum_probs=107.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCc-eEeccCCccccccCCCCccchhhhhhcCCCCCchHHHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVM 297 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~-~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~Fla~R~~ 297 (470)
+.+++|+|||.|||||||+++.|.++ |..+++ +..+.+|++. -+ +..| +.|+.
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~-Ldprg~~V~~~~~Pt~e----------E~--------~~~y-------l~R~~ 137 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTAN-MNPRSARVVALTKPTET----------ER--------GQWY-------FQRYV 137 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT-SCTTTEEEEECCSCCHH----------HH--------TSCT-------THHHH
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHH-hcccCCeEEEeCCcChH----------HH--------hchH-------HHHHH
Confidence 35899999999999999999999997 887774 3456777532 01 0011 12321
Q ss_pred HHHHhcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHH---hhcCCCCCCcEEEEEeCCHHHHHHHH
Q 012135 298 QERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPV---VSVLPGLIPDGFIYLRASPDTCHKRM 374 (470)
Q Consensus 298 ql~~~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l---~~~Lp~lkPDLvIyLda~pEv~leRI 374 (470)
...+..+.++|+|||+||+. ++. ...|.+++.+|..+..+...+ ...-+ .|++.|||++|+++.++|+
T Consensus 138 ---~~LP~~G~IvIfDRswYs~v-~~~---rv~g~~~~~e~~~~~~~In~FE~~L~~~G--~~~lKf~L~Is~eeq~kR~ 208 (304)
T 3czq_A 138 ---ATFPTAGEFVLFDRSWYNRA-GVE---PVMGFCTPDQYEQFLKEAPRFEEMIANEG--IHLFKFWINIGREMQLKRF 208 (304)
T ss_dssp ---TTCCCTTCEEEEEECGGGGT-THH---HHHTSSCHHHHHHHHHHHHHHHHHHHHHT--CEEEEEEEECCHHHHHHHH
T ss_pred ---HhcccCCeEEEEECCcchHH-HHH---HHhcCCCHHHHHHHHHHHHHHHHHHHhCC--CeeEEEEEECCHHHHHHHH
Confidence 22344578999999999984 222 123667776665444433332 11122 6899999999999999999
Q ss_pred HHhcccccc--------CCcHHHHHHHHHHHHhhcCcCC--CCCeEEEEccC
Q 012135 375 MLRKRAEEG--------GVSLDYLRSLHEKHENWLFPFE--SGNHGVLAVSK 416 (470)
Q Consensus 375 ~kRgR~~E~--------~i~~eYLe~L~e~Ye~w~~~~~--~~~v~VIDvd~ 416 (470)
.+|.....+ -...+++....++|+..+.... ..++.|||++.
T Consensus 209 ~~R~~dp~k~Wk~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~d 260 (304)
T 3czq_A 209 HDRRHDPLKIWKLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGND 260 (304)
T ss_dssp HHHHHCTTTGGGCCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSS
T ss_pred HHhhcCcccccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCC
Confidence 887432111 1124666777788887765432 34799999984
No 29
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.38 E-value=2.3e-12 Score=116.53 Aligned_cols=175 Identities=15% Similarity=0.075 Sum_probs=89.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCceEeccCCccccccCCCCccchhhhhhcCCCCCchHHHHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQ 298 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~Fla~R~~q 298 (470)
+++++|+|+|++||||||+++.|++. ++... +. . +.+. ..+...+..+.. .+..++. ...+.+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~-l~~~~-i~-~----D~~~------~~~~~~~~~~~~--~~~~~~~--~~~~~~ 65 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG-LRLPL-LS-K----DAFK------EVMFDGLGWSDR--EWSRRVG--ATAIMM 65 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH-HTCCE-EE-H----HHHH------HHHHHHHCCCSH--HHHHHHH--HHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH-cCCeE-ec-H----HHHH------HHHHHhcCccch--HHHHHhh--HHHHHH
Confidence 35789999999999999999999997 76431 11 1 1100 112222211111 1111111 011111
Q ss_pred H----HHhcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHHHH
Q 012135 299 E----RESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRM 374 (470)
Q Consensus 299 l----~~~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~leRI 374 (470)
+ .... ..+..+|+|+.. +.. . .+..+ ..+....+ .|+++|||++|++++++|+
T Consensus 66 ~~~~~~~~l-~~g~~vi~d~~~-~~~----~--------------~~~~~-~~l~~~~~--~~~~~v~l~~~~e~~~~R~ 122 (193)
T 2rhm_A 66 LYHTAATIL-QSGQSLIMESNF-RVD----L--------------DTERM-QNLHTIAP--FTPIQIRCVASGDVLVERI 122 (193)
T ss_dssp HHHHHHHHH-HTTCCEEEEECC-CHH----H--------------HHHHH-HHHHHHSC--CEEEEEEEECCHHHHHHHH
T ss_pred HHHHHHHHH-hCCCeEEEecCC-CCH----H--------------HHHHH-HHHHHhcC--CeEEEEEEeCCHHHHHHHH
Confidence 1 1111 123467777765 210 0 01111 11222222 6899999999999999999
Q ss_pred HHhcccccc---CCcHHHHH--HHHHHHHhhcCcCCC-CCeEEEEccCCCcccCCCCchHHHHHHHHhhhhhHH
Q 012135 375 MLRKRAEEG---GVSLDYLR--SLHEKHENWLFPFES-GNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMH 442 (470)
Q Consensus 375 ~kRgR~~E~---~i~~eYLe--~L~e~Ye~w~~~~~~-~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~~L~ 442 (470)
.+|++..+. ....+|+. .+...|+. +.++.. ....+||++.. .+++.++|.+.|...+.
T Consensus 123 ~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Idt~~~--------~~~~~~~i~~~i~~~l~ 187 (193)
T 2rhm_A 123 LSRIAQGARHPGHCDDRSPADLELVRSRGD-IPPLPLGGPLLTVDTTFP--------EQIDMNAIVQWVRQHLQ 187 (193)
T ss_dssp HHHHHTTCC--------CHHHHHHHHHSCC-CCCCCCCSCEEEEECSSG--------GGCCHHHHHHHHHHHHH
T ss_pred HHhcCccccCcccccCccCcchhhHHHHhc-CCCccCCCCEEEEeCCCC--------cccCHHHHHHHHHHHHH
Confidence 998753221 12235555 35455554 333332 46788998862 23455566665655544
No 30
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.33 E-value=1.9e-11 Score=110.70 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=46.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhcccccc--CCcHHHHHHHHHHHHhh---cCcCC-CCCeEEEEccCCCcccCCCCchHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEG--GVSLDYLRSLHEKHENW---LFPFE-SGNHGVLAVSKLPLHIDNGLHPDI 429 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~--~i~~eYLe~L~e~Ye~w---~~~~~-~~~v~VIDvd~lD~~~~~~~~eev 429 (470)
.||++|||++|++++++|+.+|+..... ....++.+++...|... +..|. ...+.+||++. +.+++
T Consensus 112 ~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~~~--------~~e~v 183 (196)
T 2c95_A 112 QPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEG--------SVDSV 183 (196)
T ss_dssp CCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEECCS--------CHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCC--------CHHHH
Confidence 6899999999999999999988632111 11234445554443321 11111 12356788763 56888
Q ss_pred HHHHHHhhhh
Q 012135 430 RDRVFYLDGP 439 (470)
Q Consensus 430 ~d~V~~~I~~ 439 (470)
.+.|...+..
T Consensus 184 ~~~i~~~l~~ 193 (196)
T 2c95_A 184 FSQVCTHLDA 193 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888776654
No 31
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.32 E-value=1.5e-11 Score=113.09 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=46.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHH-HHHHHHHHhh---cCcCCCCCeEEEEccCCCcccCCCCchHHHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYL-RSLHEKHENW---LFPFESGNHGVLAVSKLPLHIDNGLHPDIRD 431 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYL-e~L~e~Ye~w---~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d 431 (470)
.||++|||++|++++++|+.+|+|..+ +.+.+ +++...+... ...+ .....+||++. +++++.+
T Consensus 126 ~~~~vi~l~~~~e~~~~Rl~~R~r~~~---~~e~~~~r~~~~~~~~~~~~~~~-~~~~~~Id~~~--------~~eev~~ 193 (201)
T 2cdn_A 126 DIDAVLEFRVSEEVLLERLKGRGRADD---TDDVILNRMKVYRDETAPLLEYY-RDQLKTVDAVG--------TMDEVFA 193 (201)
T ss_dssp CCCEEEEEECCHHHHHHHHHHHCCTTC---SHHHHHHHHHHHHHHTTTHHHHT-TTTEEEEECCS--------CHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHcCCCCCC---CHHHHHHHHHHHHHhhHHHHHHh-cCcEEEEeCCC--------CHHHHHH
Confidence 689999999999999999999987532 23333 4443333221 1222 34578888764 5688888
Q ss_pred HHHHhh
Q 012135 432 RVFYLD 437 (470)
Q Consensus 432 ~V~~~I 437 (470)
.|...+
T Consensus 194 ~I~~~l 199 (201)
T 2cdn_A 194 RALRAL 199 (201)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 877655
No 32
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.31 E-value=2.5e-11 Score=117.42 Aligned_cols=168 Identities=14% Similarity=0.188 Sum_probs=92.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCceEe-ccCCccccccCCCCccchhhhhhcCCCCCchHHHHHHHHHHHHH
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELRDLVEI-VPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVMQ 298 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~Ev-v~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~Fla~R~~q 298 (470)
++++|+|+|++||||||+++.|++. |...++..+ +.. + .+...+. + |....+.++.......
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~-L~~~g~~~i~~~~--D----------~~~~~l~-~---~~~~~e~~~~~~~~~~ 65 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI-LSKNNIDVIVLGS--D----------LIRESFP-V---WKEKYEEFIKKSTYRL 65 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH-HHHTTCCEEEECT--H----------HHHTTSS-S---CCGGGHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH-HHhCCCEEEEECc--h----------HHHHHHh-h---hhHHHHHHHHHHHHHH
Confidence 4679999999999999999999986 432222111 110 1 1111111 0 2111122221111111
Q ss_pred HHHhcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHHHHHHhc
Q 012135 299 ERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMMLRK 378 (470)
Q Consensus 299 l~~~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~leRI~kRg 378 (470)
....... ..+|+|+..+...+ ...+.. +....+ .|+++|||++|++++++|+.+|+
T Consensus 66 i~~~l~~--~~vIiD~~~~~~~~----------------~~~l~~----~a~~~~--~~~~vi~l~~~~e~~~~R~~~R~ 121 (260)
T 3a4m_A 66 IDSALKN--YWVIVDDTNYYNSM----------------RRDLIN----IAKKYN--KNYAIIYLKASLDVLIRRNIERG 121 (260)
T ss_dssp HHHHHTT--SEEEECSCCCSHHH----------------HHHHHH----HHHHTT--CEEEEEEEECCHHHHHHHHHHTT
T ss_pred HHHHhhC--CEEEEeCCcccHHH----------------HHHHHH----HHHHcC--CCEEEEEEeCCHHHHHHHHHhCC
Confidence 2222212 56778875543210 111111 111222 68999999999999999999988
Q ss_pred cccccCCcHHHHHHHHHHHHhhcCcCC-CCCeEEEEccCCCcccCCCCchHHHHHHHHhhh
Q 012135 379 RAEEGGVSLDYLRSLHEKHENWLFPFE-SGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDG 438 (470)
Q Consensus 379 R~~E~~i~~eYLe~L~e~Ye~w~~~~~-~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~ 438 (470)
+. .+.++++.+.+.|+.....+. ..+..+||++. +. +++++.+.|.+.+.
T Consensus 122 ~~----~~~~~l~~~~~~~e~~~~~~~~~~~~~~Id~~~-~~-----~~~ei~~~I~~~l~ 172 (260)
T 3a4m_A 122 EK----IPNEVIKKMYEKFDEPGKKYKWDEPFLIIDTTK-DI-----DFNEIAKKLIEKSK 172 (260)
T ss_dssp CS----SCHHHHHHHHHHCCCTTSSCGGGCCSEEEETTS-CC-----CHHHHHHHHHHHHT
T ss_pred CC----CCHHHHHHHHHHhcCccccCCCCCCEEEEeCCC-CC-----CHHHHHHHHHhccc
Confidence 53 345778877777765544332 23578889885 11 34666666655444
No 33
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.30 E-value=1.7e-11 Score=110.19 Aligned_cols=75 Identities=13% Similarity=0.111 Sum_probs=46.5
Q ss_pred CCcEEEEEeCCHHHHHH-HHHH--hccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHH
Q 012135 356 IPDGFIYLRASPDTCHK-RMML--RKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDR 432 (470)
Q Consensus 356 kPDLvIyLda~pEv~le-RI~k--RgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~ 432 (470)
.||++|||++|++++++ |+.+ |+++.+......+...+...|...+..+....+.+|+ +. + .+.+++.+.
T Consensus 114 ~~~~~i~l~~~~~~~~~rRl~~~~R~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~-~-----~~~e~~~~~ 186 (192)
T 1kht_A 114 NPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQ-NR-N-----GLLDQAVEE 186 (192)
T ss_dssp CCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE-CC-T-----TCHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHhhhcccCCCcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEe-CC-C-----CCHHHHHHH
Confidence 47999999999999996 9988 8875443223344555666665544433223445552 21 1 136777777
Q ss_pred HHHhh
Q 012135 433 VFYLD 437 (470)
Q Consensus 433 V~~~I 437 (470)
|...+
T Consensus 187 i~~~i 191 (192)
T 1kht_A 187 LTNVL 191 (192)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76554
No 34
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.30 E-value=7.7e-12 Score=113.56 Aligned_cols=177 Identities=11% Similarity=0.077 Sum_probs=90.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCceE---eccCCccccccCCCCccchhhhhhcCCCCCchHHHHHHHHHHH
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELRDLVE---IVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRV 296 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~E---vv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~Fla~R~ 296 (470)
++++|+|+|++||||||+++.|+++ ++... +. .+.+.... +...+..+..++.+............+...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~-l~~~~-i~~d~~~~~~~~~----~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~- 83 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEK-YGFTH-LSTGELLREELAS----ESERSKLIRDIMERGDLVPSGIVLELLKEA- 83 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHH-HTCEE-EEHHHHHHHHHHH----TCHHHHHHHHHHHTTCCCCHHHHHHHHHHH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH-hCCeE-EcHHHHHHHHHHh----CCHHHHHHHHHHHcCCcCCHHHHHHHHHHH-
Confidence 4679999999999999999999997 66432 11 01110000 000011222333221111111000011111
Q ss_pred HHHHHhcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCCCCCCcEEEEEeCCHHHHHHHHHH
Q 012135 297 MQERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLPGLIPDGFIYLRASPDTCHKRMML 376 (470)
Q Consensus 297 ~ql~~~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp~lkPDLvIyLda~pEv~leRI~k 376 (470)
..... ..+..+|+|+++.+.. .. ..| ...++ .||++|||++|++++++|+.+
T Consensus 84 --i~~~~-~~~~~vi~dg~~~~~~----------------~~---~~l----~~~~~--~~~~~i~l~~~~~~~~~R~~~ 135 (199)
T 2bwj_A 84 --MVASL-GDTRGFLIDGYPREVK----------------QG---EEF----GRRIG--DPQLVICMDCSADTMTNRLLQ 135 (199)
T ss_dssp --HHHHT-TSCSCEEEETCCSSHH----------------HH---HHH----HHHTC--CCSEEEEEECCHHHHHHHHHH
T ss_pred --Hhccc-ccCccEEEeCCCCCHH----------------HH---HHH----HHhcC--CCCEEEEEECCHHHHHHHHHc
Confidence 11111 1245788887665421 00 011 11233 689999999999999999999
Q ss_pred hcccccc--CCcHHHHHHHHHHHHhhc---CcCCC-CCeEEEEccCCCcccCCCCchHHHHHHHHhhhh
Q 012135 377 RKRAEEG--GVSLDYLRSLHEKHENWL---FPFES-GNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGP 439 (470)
Q Consensus 377 RgR~~E~--~i~~eYLe~L~e~Ye~w~---~~~~~-~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~ 439 (470)
|+..... ....++.+++...|.... ..|.. ..+.+||++. +.+++.+.|.+.+..
T Consensus 136 R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~~~--------~~e~v~~~i~~~l~~ 196 (199)
T 2bwj_A 136 MSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEG--------TPEDVFLQLCTAIDS 196 (199)
T ss_dssp TCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTS--------CHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCC--------CHHHHHHHHHHHHHH
Confidence 9752111 011344455544333321 01111 2347788653 568888888776654
No 35
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.27 E-value=8.8e-11 Score=105.44 Aligned_cols=76 Identities=5% Similarity=0.051 Sum_probs=47.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhcccccc--CCcHHHHHHHHHHHHh---hcCcCC-CCCeEEEEccCCCcccCCCCchHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEG--GVSLDYLRSLHEKHEN---WLFPFE-SGNHGVLAVSKLPLHIDNGLHPDI 429 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~--~i~~eYLe~L~e~Ye~---w~~~~~-~~~v~VIDvd~lD~~~~~~~~eev 429 (470)
.||++|||++|++++++|+.+|+..... ....++.+++...++. ....+. ...+.+||++. +.+++
T Consensus 110 ~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~id~~~--------~~~~~ 181 (194)
T 1qf9_A 110 DTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANR--------DVNEV 181 (194)
T ss_dssp EEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSS--------CHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCC--------CHHHH
Confidence 6899999999999999999988642111 1123455556543321 111111 12457888874 56888
Q ss_pred HHHHHHhhhh
Q 012135 430 RDRVFYLDGP 439 (470)
Q Consensus 430 ~d~V~~~I~~ 439 (470)
.+.|...+..
T Consensus 182 ~~~i~~~l~~ 191 (194)
T 1qf9_A 182 YNDVENLFKS 191 (194)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887766643
No 36
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.27 E-value=6.1e-11 Score=111.03 Aligned_cols=30 Identities=27% Similarity=0.264 Sum_probs=26.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
.++++|+|+|++||||||+++.|+++ ++..
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~~-l~~~ 32 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKKE-YGLA 32 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHHH-HCCE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH-hCce
Confidence 35689999999999999999999997 7653
No 37
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.26 E-value=4.5e-11 Score=110.00 Aligned_cols=70 Identities=16% Similarity=0.067 Sum_probs=48.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFY 435 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~ 435 (470)
.|+.+|||++|++++++|+.+|+... .+.+.++.. +..+-..+......+||++. +++++.++|..
T Consensus 110 ~~~~vi~l~~~~e~~~~Rl~~R~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~Id~~~--------~~~e~~~~I~~ 175 (202)
T 3t61_A 110 GGLAFVFLHGSESVLAERMHHRTGHF---MPSSLLQTQ---LETLEDPRGEVRTVAVDVAQ--------PLAEIVREALA 175 (202)
T ss_dssp TCCEEEEEECCHHHHHHHHHHHHSSC---CCHHHHHHH---HHHCCCCTTSTTEEEEESSS--------CHHHHHHHHHH
T ss_pred CCeEEEEEeCCHHHHHHHHHHhhccC---CCHHHHHHH---HHhcCCCCCCCCeEEEeCCC--------CHHHHHHHHHH
Confidence 57899999999999999999987532 123334433 33333223334578899883 56889999888
Q ss_pred hhhh
Q 012135 436 LDGP 439 (470)
Q Consensus 436 ~I~~ 439 (470)
.+..
T Consensus 176 ~l~~ 179 (202)
T 3t61_A 176 GLAR 179 (202)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 38
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.23 E-value=7.9e-11 Score=103.18 Aligned_cols=75 Identities=12% Similarity=0.077 Sum_probs=42.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHH-HHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHE-KHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVF 434 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e-~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~ 434 (470)
.|+++|||++|++++++|+.+|+++.......++++++.. .+.. ...+......+||.+. +.+++.+.|.
T Consensus 101 ~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~ad~vId~~~--------~~~~~~~~i~ 171 (179)
T 3lw7_A 101 DSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLG-IGEVIAMADYIITNDS--------NYEEFKRRCE 171 (179)
T ss_dssp SCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHT-HHHHHHTCSEEEECCS--------CHHHHHHHHH
T ss_pred CCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhccC-hHhHHHhCCEEEECCC--------CHHHHHHHHH
Confidence 5799999999999999999999875322222344444321 1110 0011111236777664 4577777777
Q ss_pred Hhhhh
Q 012135 435 YLDGP 439 (470)
Q Consensus 435 ~~I~~ 439 (470)
..+..
T Consensus 172 ~~l~~ 176 (179)
T 3lw7_A 172 EVTDR 176 (179)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 39
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=99.23 E-value=7.4e-11 Score=125.75 Aligned_cols=184 Identities=8% Similarity=-0.021 Sum_probs=113.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCce-EeccCCccccccCCCCccchhhhhhcCCCCCchHHHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDLV-EIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVM 297 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~-Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~Fla~R~~ 297 (470)
..+++|+|||.|||||+|+++.|.+. |+.+++- ..+.+|++. ..- . .| +.|+.
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~-l~prg~~V~a~~~Pt~~---------E~~--------~-~y-------l~R~~ 94 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEW-MDPRLIEVQSFLRPSDE---------ELE--------R-PP-------QWRFW 94 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH-SCGGGEEEEECSSCCHH---------HHT--------S-CT-------THHHH
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHh-cCccCCeEEEeCCCChh---------hcc--------C-Ch-------hhhHH
Confidence 57899999999999999999999997 8777642 345666432 000 0 11 12332
Q ss_pred HHHHhcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHH---hhcCCCCCCcEEEEEeCCHHHHHHHH
Q 012135 298 QERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPV---VSVLPGLIPDGFIYLRASPDTCHKRM 374 (470)
Q Consensus 298 ql~~~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l---~~~Lp~lkPDLvIyLda~pEv~leRI 374 (470)
...+..+.++|+|||.|++. ++ .+..|.+++.++..+..+...+ ...-+ .|++.|||++|+++..+|+
T Consensus 95 ---~~lP~~G~IvIfdRSwYs~~-~v---~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g--~~i~KffL~is~eeq~kRl 165 (500)
T 3czp_A 95 ---RRLPPKGRTGIFFGNWYSQM-LY---ARVEGHIKEAKLDQAIDAAERFERMLCDEG--ALLFKFWFHLSKKQLKERL 165 (500)
T ss_dssp ---HHCCCTTCEEEEESCHHHHH-HH---HHHTTSSCHHHHHHHHHHHHHHHHHHHHTT--CEEEEEEEECCHHHHHHCC
T ss_pred ---HhCCCCCeEEEEeCchhhHH-HH---HHHhcCCCHHHHHHHHHHHHHHHHHHhcCC--CeEEEEEEECCHHHHHHHH
Confidence 11344578999999999884 22 2335778877766555554333 22333 7899999999999999999
Q ss_pred HHhcccccc--------CCcHHHHHHHHHHHHhhcCcCC--CCCeEEEEccCCCcccCCCCchHHHHHHHHhhhhhHH
Q 012135 375 MLRKRAEEG--------GVSLDYLRSLHEKHENWLFPFE--SGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMH 442 (470)
Q Consensus 375 ~kRgR~~E~--------~i~~eYLe~L~e~Ye~w~~~~~--~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~~L~ 442 (470)
.+|.....+ -...+++.....+|+..+.... ..+..||+++.-.. ....+.+.|++.|...|.
T Consensus 166 ~~R~~~p~k~Wk~s~~D~~~~~~~~~Y~~a~e~~l~~T~t~~APW~vI~a~dk~~-----arl~v~~~il~~l~~~l~ 238 (500)
T 3czp_A 166 KALEKDPQHSWKLSPLDWKQSEVYDRFVHYGERVLRRTSRDYAPWYVVEGADERY-----RALTVGRILLEGLQAALA 238 (500)
T ss_dssp -------------CSSCTTSHHHHHHHHHHHHHHHHHHCBTTBCEEEEECSCHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcccCCCCHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCEEEEECCCcch-----hHHHHHHHHHHHHHHHHH
Confidence 988643221 1235666766677777665332 34799999984111 134555555555555554
No 40
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.21 E-value=2.9e-10 Score=106.25 Aligned_cols=80 Identities=15% Similarity=0.088 Sum_probs=51.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhcc----------------------ccccC---CcHHHHHHHHHHHH---hhcCcCCCC
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKR----------------------AEEGG---VSLDYLRSLHEKHE---NWLFPFESG 407 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR----------------------~~E~~---i~~eYLe~L~e~Ye---~w~~~~~~~ 407 (470)
.||++|||+++++++++|+..|+. ..+.. ......+++...|. .++..|. .
T Consensus 108 ~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~-~ 186 (222)
T 1zak_A 108 RPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTYE-N 186 (222)
T ss_dssp CCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTCCTTHHHHHHHHHHHHHHHHHHTTC-C
T ss_pred CCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 689999999999999999987752 11110 11122234434444 3333343 2
Q ss_pred CeEEEEccCCCcccCCCCchHHHHHHHHhhhhhHHhh
Q 012135 408 NHGVLAVSKLPLHIDNGLHPDIRDRVFYLDGPHMHSS 444 (470)
Q Consensus 408 ~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~~~L~~~ 444 (470)
.+.+||++. +.+++.+.|.+.+...+...
T Consensus 187 ~~~~Id~~~--------~~~ev~~~I~~~l~~~l~~~ 215 (222)
T 1zak_A 187 IIVKVQGDA--------TVDAVFAKIDELLGSILEKK 215 (222)
T ss_dssp CEEEEECSS--------CHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCC--------CHHHHHHHHHHHHHhhcccc
Confidence 477888864 67899999988887766543
No 41
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.21 E-value=1.8e-10 Score=107.45 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=26.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
.++++|+|+|++||||||+++.|+++ ++..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~-l~~~ 31 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQER-FHAA 31 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH-HCCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-cCce
Confidence 35789999999999999999999997 7653
No 42
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=99.20 E-value=7.5e-11 Score=125.69 Aligned_cols=163 Identities=12% Similarity=0.134 Sum_probs=105.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCc-eEeccCCccccccCCCCccchhhhhhcCCCCCchHHHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDL-VEIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVM 297 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~-~Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~Fla~R~~ 297 (470)
+.+++|+|||.|||||+|+++.|.+. |+.+++ +..+.+|++. .. .. .| + .|+.
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~-ldprg~~V~~~~~Pt~~---------E~--------~~-~y------l-~R~~ 351 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDA-LDPRQYHIVPIAAPTEE---------ER--------AQ-PY------L-WRFW 351 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTT-SCGGGCEEEECCSCCHH---------HH--------TS-CT------T-HHHH
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHh-cCccCCeEEEeCCCChh---------hh--------cc-hH------H-HHHH
Confidence 47899999999999999999999987 777664 2345666432 10 01 11 1 2321
Q ss_pred HHHHhcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHh---hcCCCCCCcEEEEEeCCHHHHHHHH
Q 012135 298 QERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVV---SVLPGLIPDGFIYLRASPDTCHKRM 374 (470)
Q Consensus 298 ql~~~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~---~~Lp~lkPDLvIyLda~pEv~leRI 374 (470)
...+..+.++|+|||.|++.. .. ...|.+++.+|..+..+...+. ...+ .|++.|||++|+++..+|+
T Consensus 352 ---~~lP~~G~i~IfDRswY~~~~-v~---rv~g~~~~~~~~~~~~~i~~FE~~L~~~g--~~i~Kf~L~is~eeQ~~R~ 422 (500)
T 3czp_A 352 ---RHIPARRQFTIFDRSWYGRVL-VE---RIEGFCAPADWLRAYGEINDFEEQLSEYG--IIVVKFWLAIDKQTQMERF 422 (500)
T ss_dssp ---TTCCCTTCEEEEESCGGGGGT-HH---HHHTSSCHHHHHHHHHHHHHHHHHHHHHT--EEEEEEEEECCHHHHHHHH
T ss_pred ---HhCCCCCeEEEEeCcchhhHH-HH---HHhcCCCHHHHHHHHHHHHHHHHHHhhCC--CeEEEEEEECCHHHHHHHH
Confidence 223445789999999999842 22 2247778877774444433332 2233 6899999999999999999
Q ss_pred HHhcccccc--------CCcHHHHHHHHHHHHhhcCcCC--CCCeEEEEccC
Q 012135 375 MLRKRAEEG--------GVSLDYLRSLHEKHENWLFPFE--SGNHGVLAVSK 416 (470)
Q Consensus 375 ~kRgR~~E~--------~i~~eYLe~L~e~Ye~w~~~~~--~~~v~VIDvd~ 416 (470)
.+|.....+ -...+++.....+|+..+.... ..+..+|+++.
T Consensus 423 ~~R~~~p~k~Wk~s~~D~~~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~d 474 (500)
T 3czp_A 423 KEREKTPYKRYKITEEDWRNRDKWDQYVDAVGDMVDRTSTEIAPWTLVEAND 474 (500)
T ss_dssp HHHHHSSCTTSCCCSSTTTGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSS
T ss_pred HHHhcCCcccCCCCHHHHHHHHhHHHHHHHHHHHHHHhccCCCCEEEEECCC
Confidence 998542221 1223455555555555544332 24799999884
No 43
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.19 E-value=1.4e-10 Score=109.24 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=23.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
|+|+|+|++||||||+++.|+++ ++.
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~-lg~ 26 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDK-YSL 26 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH-HTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-hCC
Confidence 68999999999999999999997 664
No 44
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.17 E-value=6.2e-10 Score=105.27 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=25.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
.++++|+|+|++||||||+++.|+++ ++.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~-l~~ 42 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKN-FCV 42 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH-HTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH-hCC
Confidence 45689999999999999999999997 764
No 45
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.17 E-value=5.7e-10 Score=102.31 Aligned_cols=30 Identities=20% Similarity=0.353 Sum_probs=26.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
..+.++|+|+|++||||||+++.|+++ ++.
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~-~g~ 41 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKD-YSF 41 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHH-SSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH-cCc
Confidence 445679999999999999999999987 664
No 46
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.14 E-value=2.8e-10 Score=102.56 Aligned_cols=72 Identities=14% Similarity=0.100 Sum_probs=44.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhc----cccccCCcHHHHHHHHHHHHh---hcCcCC-CCCeEEEEccCCCcccCCCCch
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRK----RAEEGGVSLDYLRSLHEKHEN---WLFPFE-SGNHGVLAVSKLPLHIDNGLHP 427 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRg----R~~E~~i~~eYLe~L~e~Ye~---w~~~~~-~~~v~VIDvd~lD~~~~~~~~e 427 (470)
.||++|||++|++++++|+.+|+ |. +. ....+.+++...+.. +...|. ...+.+||++. +++
T Consensus 105 ~~~~vi~l~~~~e~~~~R~~~R~~~~~r~-~~-~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~--------~~~ 174 (186)
T 3cm0_A 105 RLLGVVLVEVPEEELVRRILRRAELEGRS-DD-NEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLG--------TPD 174 (186)
T ss_dssp EEEEEEEEECCHHHHHHHHHHHHHHHTCS-SC-CHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCS--------CHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhccccCCCC-CC-CHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCC--------CHH
Confidence 58999999999999999999885 32 21 123344445433322 111121 12367888764 567
Q ss_pred HHHHHHHHhh
Q 012135 428 DIRDRVFYLD 437 (470)
Q Consensus 428 ev~d~V~~~I 437 (470)
++.+.|.+.+
T Consensus 175 ~v~~~i~~~l 184 (186)
T 3cm0_A 175 EVYARIRAAL 184 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7877776544
No 47
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.14 E-value=1.5e-10 Score=105.18 Aligned_cols=32 Identities=31% Similarity=0.360 Sum_probs=27.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
..+++++|+|+|.+||||||+++.|++. ++..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~-l~~~ 40 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADL-LQKE 40 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHH-HHHT
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHH-HHhc
Confidence 4567899999999999999999999987 6543
No 48
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.12 E-value=3.2e-10 Score=101.70 Aligned_cols=76 Identities=12% Similarity=0.127 Sum_probs=45.1
Q ss_pred EEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHhhh
Q 012135 359 GFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYLDG 438 (470)
Q Consensus 359 LvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~I~ 438 (470)
..|||++|++++++|+.+|+... ...+.++.+.+.++.+ .+ .. +||++.. +++++.+.|.+.+.
T Consensus 107 ~~i~l~~~~e~~~~R~~~R~~r~---~~~~~~~~~~~~~~~~--~~---~~-~Id~~~~-------~~~~~~~~I~~~l~ 170 (183)
T 2vli_A 107 HHFTLIAPLNVVLERLRRDGQPQ---VNVGTVEDRLNELRGE--QF---QT-HIDTAGL-------GTQQVAEQIAAQVG 170 (183)
T ss_dssp EEEEEECCHHHHHHHHHTC-------CCHHHHHHHHHHHTSG--GG---CS-EEECTTC-------CHHHHHHHHHHHHT
T ss_pred EEEEEeCCHHHHHHHHHhccccc---hhHHHHHHHHHhhccc--cc---ce-EeeCCCC-------CHHHHHHHHHHHHH
Confidence 55999999999999999886321 2345666666666544 22 24 8888743 55788888776665
Q ss_pred hhHHhhhhcCCeEEEe
Q 012135 439 PHMHSSIQKVPALVLD 454 (470)
Q Consensus 439 ~~L~~~i~~~p~l~~d 454 (470)
. .+..-|.+.+|
T Consensus 171 ~----~~~~~~~~~~~ 182 (183)
T 2vli_A 171 L----TLAPPPQGALH 182 (183)
T ss_dssp C----CCCCC------
T ss_pred H----hcCCCCCCCCC
Confidence 3 34444555554
No 49
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.08 E-value=7.5e-10 Score=103.03 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=23.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
|.|+|+|++||||||+++.|+++ ++..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~-~g~~ 27 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEK-YGIP 27 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH-HCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-hCCe
Confidence 57999999999999999999997 6653
No 50
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=1.8e-09 Score=99.57 Aligned_cols=78 Identities=10% Similarity=0.080 Sum_probs=50.2
Q ss_pred CCcEEEEEeCCHHHHHHHHH-Hh-ccccccCCc-HHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHH
Q 012135 356 IPDGFIYLRASPDTCHKRMM-LR-KRAEEGGVS-LDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDR 432 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~-kR-gR~~E~~i~-~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~ 432 (470)
.++.+|||++|++++++|+. .| +|+.....+ .++.+.+...|......|.. ...+||++.. ++++++++
T Consensus 117 ~~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~~y~~-ad~~Idt~~~-------s~ee~~~~ 188 (199)
T 3vaa_A 117 RTGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRAPFYTQ-AQYIFNADEL-------EDRWQIES 188 (199)
T ss_dssp HHSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHHHHHTT-SSEEEECCCC-------SSHHHHHH
T ss_pred cCCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHhh-CCEEEECCCC-------CHHHHHHH
Confidence 35899999999999999998 34 455443332 23444444444433222222 3578888853 56888888
Q ss_pred HHHhhhhhH
Q 012135 433 VFYLDGPHM 441 (470)
Q Consensus 433 V~~~I~~~L 441 (470)
|...+...+
T Consensus 189 I~~~l~~~l 197 (199)
T 3vaa_A 189 SVQRLQELL 197 (199)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 887776543
No 51
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.07 E-value=1.3e-09 Score=100.94 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=23.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
|.|+|+|++||||||+++.|+++ ++..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~-~~~~ 27 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEK-YEIP 27 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH-HCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 57999999999999999999987 6653
No 52
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.07 E-value=3.3e-10 Score=105.01 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
|.|+|+|++||||||+++.|+++ ++..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~-~~~~ 27 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEK-YGIP 27 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH-SSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 57999999999999999999987 6653
No 53
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.06 E-value=1.5e-09 Score=104.04 Aligned_cols=29 Identities=17% Similarity=0.068 Sum_probs=25.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
.++++|+|+|++||||||+++.|+++ ++.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~-~g~ 55 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKS-HCY 55 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH-HCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-hCC
Confidence 46789999999999999999999987 664
No 54
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.01 E-value=2.3e-09 Score=95.30 Aligned_cols=42 Identities=19% Similarity=0.137 Sum_probs=33.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhh
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENW 400 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w 400 (470)
.+..+|||++|++++++|+.+|+.. ..+.+++++..+.|+..
T Consensus 105 ~~~~~i~l~~~~~~~~~R~~~R~~~---~~~~~~i~~~~~~~~~~ 146 (181)
T 1ly1_A 105 WKVEHKVFDVPWTELVKRNSKRGTK---AVPIDVLRSMYKSMREY 146 (181)
T ss_dssp CEEEEEECCCCHHHHHHHHTTCGGG---CCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCHHHHHHHHhccccC---CCCHHHHHHHHHHhhcc
Confidence 3568999999999999999998753 34667888877888775
No 55
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.98 E-value=2.3e-09 Score=99.70 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=25.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
.++++|+|+|++||||||+++.|++. ++
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~-l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQ-LV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH-HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH-hc
Confidence 46789999999999999999999986 55
No 56
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.98 E-value=9.8e-10 Score=103.15 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
.++++|+|+|++||||||+++.|++. ++..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~-l~~~ 34 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH-FELK 34 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH-SSSE
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH-cCCe
Confidence 35689999999999999999999987 6653
No 57
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.97 E-value=1.4e-09 Score=96.35 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=24.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
|+|+|+|++||||||+++.|+++ ++..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~-l~~~ 27 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRS-LNIP 27 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHH-HTCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 58999999999999999999997 7753
No 58
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.95 E-value=1.3e-09 Score=100.57 Aligned_cols=68 Identities=13% Similarity=0.066 Sum_probs=45.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHHh
Q 012135 357 PDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFYL 436 (470)
Q Consensus 357 PDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~~ 436 (470)
+..+|||++|++++++|+.+|+...+ +.+. +...|..+-..+......+||++. +++++.++|...
T Consensus 125 ~~~vv~l~~~~e~l~~Rl~~R~~~~~---~~~~---l~~~~~~~~~~~~~~~~~~Id~~~--------~~~e~~~~I~~~ 190 (200)
T 4eun_A 125 SVDFLHLDGPAEVIKGRMSKREGHFM---PASL---LQSQLATLEALEPDESGIVLDLRQ--------PPEQLIERALTW 190 (200)
T ss_dssp CCEEEEEECCHHHHHHHHTTCSCCSS---CGGG---HHHHHHHCCCCCTTSCEEEEETTS--------CHHHHHHHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHhcccCCC---CHHH---HHHHHHHhCCCCCCCCeEEEECCC--------CHHHHHHHHHHH
Confidence 56899999999999999998875332 2222 334444443334333578888874 568888887765
Q ss_pred hh
Q 012135 437 DG 438 (470)
Q Consensus 437 I~ 438 (470)
+.
T Consensus 191 l~ 192 (200)
T 4eun_A 191 LD 192 (200)
T ss_dssp HC
T ss_pred HH
Confidence 54
No 59
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=98.92 E-value=3.2e-09 Score=105.86 Aligned_cols=165 Identities=14% Similarity=0.159 Sum_probs=104.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCCce-EeccCCccccccCCCCccchhhhhhcCCCCCchHHHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELRDLV-EIVPEPIDKWQDVGPDHFNILGAYYDAPERYAYTFQNYVFVTRVM 297 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~~~-Evv~EPv~~W~~i~~~~~~lL~~fY~dp~r~af~~Ql~Fla~R~~ 297 (470)
..+.+|+|||.|||||.++++.|.+. |+.+++- ..+..|++. + ....| +.|+.
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~-ldPRg~~V~a~~~Pt~e------------E------~~~~y-------lwR~~ 126 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGA-MDPQGVQLTAFKAPTDE------------E------KSHDF-------LWRIE 126 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHH-SCGGGEEEEECCSCCHH------------H------HTSCT-------THHHH
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHh-cCcCceEEEECCCCChh------------h------hcCCH-------HHHHH
Confidence 46889999999999999999999997 8877642 234454321 0 01111 12332
Q ss_pred HHHHhcCCCCCeeeecceEeechhHHHHHHHHhccCChhhHHHHHhhHHHHhhcCC-CCCCcEEEEEeCCHHHHHHHHHH
Q 012135 298 QERESSGGIKPLRLMERSVFSDRMVFVRAVHEAKYMNEMEISIYDSWFDPVVSVLP-GLIPDGFIYLRASPDTCHKRMML 376 (470)
Q Consensus 298 ql~~~~~~~~~ivI~DRsI~SDryVFa~~~yesG~Ls~~E~~iy~~~~~~l~~~Lp-~lkPDLvIyLda~pEv~leRI~k 376 (470)
...+..+.++|+|||.|++.. ..- -.|..++.+|.........+...|- .-..-+.+||++|.++..+|+++
T Consensus 127 ---~~lP~~G~I~IFdRSwY~~vl--ver--V~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~ 199 (289)
T 3rhf_A 127 ---KQVPAAGMVGVFDRSQYEDVL--IHR--VHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIA 199 (289)
T ss_dssp ---TTCCCTTCEEEEESCGGGGGT--HHH--HTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHH
T ss_pred ---HhCCCCCeEEEEeCchhhhHh--HHH--HhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHH
Confidence 234555889999999999853 222 2477888777655554444443221 01445779999999999999999
Q ss_pred hccccccC--Cc------HHHHHHHHHHHHhhcCcCC--CCCeEEEEccC
Q 012135 377 RKRAEEGG--VS------LDYLRSLHEKHENWLFPFE--SGNHGVLAVSK 416 (470)
Q Consensus 377 RgR~~E~~--i~------~eYLe~L~e~Ye~w~~~~~--~~~v~VIDvd~ 416 (470)
|.....+. ++ .+.+.....+|++.+.... ..+..||+++.
T Consensus 200 R~~dP~k~WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~add 249 (289)
T 3rhf_A 200 RLDDPSKHWKYSRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANK 249 (289)
T ss_dssp HHHCGGGGGGCCHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSS
T ss_pred HhcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCC
Confidence 86544431 11 1223344455555554432 24799999984
No 60
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.92 E-value=1.8e-08 Score=96.29 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=27.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
-.++++|+|-|++|||||||++.|+++ +++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~-~g~~ 56 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK-FHFN 56 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH-HCCE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH-HCCc
Confidence 457889999999999999999999997 6653
No 61
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.90 E-value=6.6e-09 Score=93.62 Aligned_cols=75 Identities=21% Similarity=0.119 Sum_probs=45.6
Q ss_pred cEEEEEeCCHHHHHHHH--HHh-ccccccCC-cHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHH
Q 012135 358 DGFIYLRASPDTCHKRM--MLR-KRAEEGGV-SLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRV 433 (470)
Q Consensus 358 DLvIyLda~pEv~leRI--~kR-gR~~E~~i-~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V 433 (470)
+++|||++|++++++|+ ..| .|+..... ..+.++.+...++.++..+ ...+||++.. +++++++.|
T Consensus 99 ~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~~~~r~~~y~~~---ad~~Idt~~~-------~~~e~~~~I 168 (185)
T 3trf_A 99 GVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEIRKPLYQAM---ADLVYPTDDL-------NPRQLATQI 168 (185)
T ss_dssp EEEEEEECCHHHHHHHHHCCTTCSSCCCCCHHHHHHHHHHHHHHHHHHHHH---CSEEEECTTC-------CHHHHHHHH
T ss_pred CcEEEEECCHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhc---CCEEEECCCC-------CHHHHHHHH
Confidence 58999999999999999 443 34332211 1234444444444443322 2478888753 568999999
Q ss_pred HHhhhhhHH
Q 012135 434 FYLDGPHMH 442 (470)
Q Consensus 434 ~~~I~~~L~ 442 (470)
...+...+.
T Consensus 169 ~~~l~~~~~ 177 (185)
T 3trf_A 169 LVDIKQTYS 177 (185)
T ss_dssp HHHSCC---
T ss_pred HHHHHHHhh
Confidence 888877653
No 62
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.88 E-value=6.9e-09 Score=93.45 Aligned_cols=74 Identities=11% Similarity=-0.008 Sum_probs=44.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHH---HHHH
Q 012135 357 PDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDI---RDRV 433 (470)
Q Consensus 357 PDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev---~d~V 433 (470)
+|.+|||++|++++++|+.+|++..+........+.+...|......|. .-.+||++.. +++++ ++.|
T Consensus 97 ~~~vi~L~~~~e~l~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~--~~~~i~~~~~-------~~~ev~~~v~~i 167 (180)
T 3iij_A 97 FHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYK--EEIVHQLPSN-------KPEELENNVDQI 167 (180)
T ss_dssp CSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC--GGGEEEEECS-------SHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcC--CCeEEEcCCC-------CHHHHHHHHHHH
Confidence 6899999999999999999998643321111222444455555444343 2356666642 45677 4445
Q ss_pred HHhhhh
Q 012135 434 FYLDGP 439 (470)
Q Consensus 434 ~~~I~~ 439 (470)
+..+..
T Consensus 168 ~~~l~~ 173 (180)
T 3iij_A 168 LKWIEQ 173 (180)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 63
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.87 E-value=8.6e-08 Score=85.67 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=42.7
Q ss_pred Cc-EEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCc-CCCCCeEEEEccCCCcccCCCCchHHHHHHH
Q 012135 357 PD-GFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFP-FESGNHGVLAVSKLPLHIDNGLHPDIRDRVF 434 (470)
Q Consensus 357 PD-LvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~-~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~ 434 (470)
+| .+|||++|++++++|+.+|+.... +.+.++. .+..+-.. +......+||++. +++++.++|.
T Consensus 103 ~~~~vv~l~~~~e~~~~R~~~R~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~Id~~~--------~~~~~~~~i~ 168 (175)
T 1knq_A 103 PNLSFIYLKGDFDVIESRLKARKGHFF---KTQMLVT---QFETLQEPGADETDVLVVDIDQ--------PLEGVVASTI 168 (175)
T ss_dssp TTEEEEEEECCHHHHHHHHHTSTTCCC---CHHHHHH---HHHHCCCCCTTCTTEEEEECSS--------CHHHHHHHHH
T ss_pred CCEEEEEEECCHHHHHHHHHhccCCCC---chHHHHH---HHHhhhCcccCCCCeEEEeCCC--------CHHHHHHHHH
Confidence 46 799999999999999999874321 2233332 22222222 3333578888763 5678887776
Q ss_pred Hhhh
Q 012135 435 YLDG 438 (470)
Q Consensus 435 ~~I~ 438 (470)
..+.
T Consensus 169 ~~l~ 172 (175)
T 1knq_A 169 EVIK 172 (175)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6543
No 64
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.86 E-value=4.3e-08 Score=92.62 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=24.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
|+|+|-|++||||+|+++.|+++ ++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~-~g~~ 27 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE-KGFV 27 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH-HCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HCCe
Confidence 78999999999999999999997 6653
No 65
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.83 E-value=1.3e-08 Score=90.29 Aligned_cols=72 Identities=10% Similarity=0.032 Sum_probs=44.7
Q ss_pred CcEEEEEeCCHHHHHHHHH--Hh-c-cccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHH
Q 012135 357 PDGFIYLRASPDTCHKRMM--LR-K-RAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDR 432 (470)
Q Consensus 357 PDLvIyLda~pEv~leRI~--kR-g-R~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~ 432 (470)
+|++|||++|++++++|+. +| + ++.. ...+..+.+...|......+.. ...+||++.. +++++.+.
T Consensus 94 ~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~Id~~~~-------~~~~~~~~ 163 (173)
T 1e6c_A 94 HGTVVYLFAPAEELALRLQASLQAHQRPTL--TGRPIAEEMEAVLREREALYQD-VAHYVVDATQ-------PPAAIVCE 163 (173)
T ss_dssp HSEEEEEECCHHHHHHHHHHHHCSCCCCCT--THHHHHHHHHHHHHHHHHHHHH-HCSEEEETTS-------CHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHhhccCCCCCCcC--CCCCHHHHHHHHHHHHHHHHHh-CcEEEECCCC-------CHHHHHHH
Confidence 5899999999999999999 77 2 2211 1234445555555543221211 2467888742 45777777
Q ss_pred HHHhhh
Q 012135 433 VFYLDG 438 (470)
Q Consensus 433 V~~~I~ 438 (470)
|...+.
T Consensus 164 i~~~l~ 169 (173)
T 1e6c_A 164 LMQTMR 169 (173)
T ss_dssp HHHHTT
T ss_pred HHHHhc
Confidence 766553
No 66
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.79 E-value=2.9e-08 Score=91.45 Aligned_cols=73 Identities=14% Similarity=0.046 Sum_probs=48.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHH-HHHHHHHHhhc---CcCCCCCeEEEEccCCCcccCCCCchHHHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYL-RSLHEKHENWL---FPFESGNHGVLAVSKLPLHIDNGLHPDIRD 431 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYL-e~L~e~Ye~w~---~~~~~~~v~VIDvd~lD~~~~~~~~eev~d 431 (470)
.||.+|||+++++++++|+.+|++..|. . .+++ ..+...|.... ... ...+.+||++. +.+++.+
T Consensus 129 ~~d~~i~l~~~~~~~~~R~~~R~~~~e~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~v~~Id~~~--------~~eev~~ 197 (207)
T 2qt1_A 129 IWNRSYFLTIPYEECKRRRSTRVYQPPD-S-PGYFDGHVWPMYLKYRQEMQDI-TWEVVYLDGTK--------SEEDLFL 197 (207)
T ss_dssp TCSEEEEEECCHHHHHHHHHHSCCSSCC-C-TTHHHHTHHHHHHHHHHHGGGC-SSCCEEEETTS--------CHHHHHH
T ss_pred hcCeeEEEECCHHHHHHHHHHcCCCccc-h-HHHHHHHHhHHHHHHHHHHHhc-CCeEEEecCCC--------CHHHHHH
Confidence 5799999999999999999889865443 2 2233 34555554432 332 23567788774 5688888
Q ss_pred HHHHhhhh
Q 012135 432 RVFYLDGP 439 (470)
Q Consensus 432 ~V~~~I~~ 439 (470)
.|.+.+.+
T Consensus 198 ~I~~~l~~ 205 (207)
T 2qt1_A 198 QVYEDLIQ 205 (207)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 87766643
No 67
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.79 E-value=1.7e-08 Score=89.91 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=24.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
..|+|+|.+||||||+++.|+++ |+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~-lg~~ 34 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA-LKLE 34 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH-HTCC
T ss_pred ceEEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 47899999999999999999997 7764
No 68
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.73 E-value=1.4e-07 Score=84.12 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=26.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
|++++|+|.|.+||||||+++.|++. ++..
T Consensus 1 m~~~~i~l~G~~GsGKST~a~~La~~-l~~~ 30 (178)
T 1qhx_A 1 MTTRMIILNGGSSAGKSGIVRCLQSV-LPEP 30 (178)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH-SSSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh-cCCC
Confidence 46789999999999999999999997 6643
No 69
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.72 E-value=2e-08 Score=97.18 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
.|.++|.|++||||||+++.|++. ++..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~-~g~~ 35 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEK-FGIP 35 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHH-HTCC
T ss_pred ccceeeECCCCCCHHHHHHHHHHH-hCCC
Confidence 578899999999999999999997 7754
No 70
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.72 E-value=2e-08 Score=90.61 Aligned_cols=73 Identities=10% Similarity=-0.016 Sum_probs=42.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHhc-cccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHHH
Q 012135 357 PDGFIYLRASPDTCHKRMMLRK-RAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVFY 435 (470)
Q Consensus 357 PDLvIyLda~pEv~leRI~kRg-R~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~~ 435 (470)
.+.+|||++|++++++|+.+|+ ++.-... ++.+.+...|......|......+||++.. +++++.+.|..
T Consensus 94 ~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~--~~~~~i~~~~~~r~~~~~~~~~~~Idt~~~-------s~ee~~~~I~~ 164 (184)
T 2iyv_A 94 GHTVVYLEISAAEGVRRTGGNTVRPLLAGP--DRAEKYRALMAKRAPLYRRVATMRVDTNRR-------NPGAVVRHILS 164 (184)
T ss_dssp TSCEEEEECCHHHHHHHTTCCCCCSSTTSC--CHHHHHHHHHHHHHHHHHHHCSEEEECSSS-------CHHHHHHHHHT
T ss_pred CCeEEEEeCCHHHHHHHHhCCCCCCCccCC--CHHHHHHHHHHHHHHHHhccCCEEEECCCC-------CHHHHHHHHHH
Confidence 4689999999999999998875 3321111 122233333321111111113478888743 45888888776
Q ss_pred hhh
Q 012135 436 LDG 438 (470)
Q Consensus 436 ~I~ 438 (470)
.+.
T Consensus 165 ~l~ 167 (184)
T 2iyv_A 165 RLQ 167 (184)
T ss_dssp TSC
T ss_pred HHh
Confidence 554
No 71
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.71 E-value=4.7e-08 Score=93.48 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=25.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
..++++|+|.|++||||||+++.|++. ++..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~-lg~~ 49 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQL-LGQN 49 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHH-TTGG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHH-hhhh
Confidence 346689999999999999999999996 6653
No 72
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.71 E-value=5.5e-08 Score=94.65 Aligned_cols=77 Identities=13% Similarity=0.027 Sum_probs=44.8
Q ss_pred cEEEEEeCCHHHHHHHHHHh---ccccccCCc-----HHHHHHHHHHHHhhcCcCCCCCeEEE------------EccCC
Q 012135 358 DGFIYLRASPDTCHKRMMLR---KRAEEGGVS-----LDYLRSLHEKHENWLFPFESGNHGVL------------AVSKL 417 (470)
Q Consensus 358 DLvIyLda~pEv~leRI~kR---gR~~E~~i~-----~eYLe~L~e~Ye~w~~~~~~~~v~VI------------Dvd~l 417 (470)
+++|||++|++++++|+.+| .|+...... .+.++.+...|++...-|.. .-.+| |++.
T Consensus 143 ~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~lY~~-ad~vi~~~~~~~~~~~iDTs~- 220 (250)
T 3nwj_A 143 GISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTK-ASARVSLENITLKLGYRSVSD- 220 (250)
T ss_dssp SEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHTT-SSEEEEHHHHHHHHTCSSGGG-
T ss_pred CcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHHHhh-CCEEEEecccccccccccCCC-
Confidence 79999999999999999863 344433211 12344555555544333333 23556 4443
Q ss_pred CcccCCCCchHHHHHHHHhhhhhHH
Q 012135 418 PLHIDNGLHPDIRDRVFYLDGPHMH 442 (470)
Q Consensus 418 D~~~~~~~~eev~d~V~~~I~~~L~ 442 (470)
.++++++++|+..+...+.
T Consensus 221 ------~s~eev~~~I~~~i~~~~~ 239 (250)
T 3nwj_A 221 ------LTPAEIAIEAFEQVQSYLE 239 (250)
T ss_dssp ------CCHHHHHHHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHHHHhh
Confidence 3679999999888876554
No 73
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.70 E-value=2.4e-07 Score=85.83 Aligned_cols=78 Identities=13% Similarity=0.107 Sum_probs=41.6
Q ss_pred CCcEEEEEeCCHHHHHHHH----HHhccc--cccCCcHHHHHHHHHHHHhhcCcCCC-CCeEEEEccCCCcccCCCCchH
Q 012135 356 IPDGFIYLRASPDTCHKRM----MLRKRA--EEGGVSLDYLRSLHEKHENWLFPFES-GNHGVLAVSKLPLHIDNGLHPD 428 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI----~kRgR~--~E~~i~~eYLe~L~e~Ye~w~~~~~~-~~v~VIDvd~lD~~~~~~~~ee 428 (470)
.+|++|||++|++++++|+ .+||+. .+. ....+.+++...|.+...+... ....+||++.. +.++
T Consensus 140 ~~d~~i~l~~~~e~~~~R~~~~l~~rg~~~~~~~-~~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~~~-------~~~e 211 (227)
T 1cke_A 140 DAPVKIFLDASSEERAHRRMLQLQVKGFSVNFER-LLAEIKERDDRDRNRAVAPLVPAADALVLDSTTL-------SIEQ 211 (227)
T ss_dssp TCSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHH-HHHHHC-------------CCCCTTCEEEETTTS-------CHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHhCCccCCHHH-HHHHHHHHHHhhhhhcccCccCCCCEEEEeCCCC-------CHHH
Confidence 6899999999999999994 355541 111 1112222332234333233222 13478887742 5588
Q ss_pred HHHHHHHhhhhhH
Q 012135 429 IRDRVFYLDGPHM 441 (470)
Q Consensus 429 v~d~V~~~I~~~L 441 (470)
+.+.|.+.+...+
T Consensus 212 v~~~I~~~l~~~~ 224 (227)
T 1cke_A 212 VIEKALQYARQKL 224 (227)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 8888887776544
No 74
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.70 E-value=1.6e-08 Score=90.85 Aligned_cols=71 Identities=15% Similarity=0.058 Sum_probs=43.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHh---ccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHH
Q 012135 357 PDGFIYLRASPDTCHKRMMLR---KRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRV 433 (470)
Q Consensus 357 PDLvIyLda~pEv~leRI~kR---gR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V 433 (470)
.+++|||++|++++++|+.+| +|+... . .+.+.+.|......|......+||++.. +++++.+.|
T Consensus 93 ~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~--~---~~~i~~~~~~r~~~y~~~~~~~Idt~~~-------~~eev~~~I 160 (175)
T 1via_A 93 AGFCIYLKADFEYLKKRLDKDEISKRPLFY--D---EIKAKKLYNERLSKYEQKANFILNIENK-------NIDELLSEI 160 (175)
T ss_dssp GCEEEEEECCHHHHTTCCCGGGTTTSCTTC--C---HHHHHHHHHHHHHHHHHHCSEEEECTTC-------CHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHhcccCCCCCCcc--c---HHHHHHHHHHHHHHHHhcCCEEEECCCC-------CHHHHHHHH
Confidence 479999999999999999877 333221 1 2333343433221111113588888853 458888888
Q ss_pred HHhhhh
Q 012135 434 FYLDGP 439 (470)
Q Consensus 434 ~~~I~~ 439 (470)
...+..
T Consensus 161 ~~~l~~ 166 (175)
T 1via_A 161 KKVIKE 166 (175)
T ss_dssp HHHHC-
T ss_pred HHHHHh
Confidence 776643
No 75
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.68 E-value=1.1e-07 Score=91.52 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=26.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
+++.+|+|.|+.||||||+++.|++. |+..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~-Lg~~ 54 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAES-LNWR 54 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHH-TTCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh-cCCC
Confidence 45789999999999999999999987 6653
No 76
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.66 E-value=2.4e-08 Score=89.97 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETL 246 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L 246 (470)
+++++|+|+|++||||||+++.|++. +
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~-l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY-L 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH-H
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-H
Confidence 56899999999999999999999986 5
No 77
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.61 E-value=1.9e-06 Score=83.58 Aligned_cols=59 Identities=17% Similarity=0.065 Sum_probs=38.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCcC----C--CCCeEEEEccCC
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPF----E--SGNHGVLAVSKL 417 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~----~--~~~v~VIDvd~l 417 (470)
.++.+|||++|++++++|+.+|+.. .++.+.+++..+.|+...... . .....++|++..
T Consensus 105 ~~~~~i~l~~~~e~~~~R~~~R~~~---~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~iD~dgt 169 (301)
T 1ltq_A 105 WKVEHKVFDVPWTELVKRNSKRGTK---AVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGT 169 (301)
T ss_dssp CEEEEEECCCCHHHHHHHHHHCGGG---CCCHHHHHHHHHHHHHHHTCCCCCCCTTSCEEEEEETBTT
T ss_pred CcEEEEEEECCHHHHHHHHHhccCC---CCCHHHHHHHHHHHhcccCCcceeccccccceEEEeCCCC
Confidence 4578999999999999999998752 244555555555555532211 1 124567787753
No 78
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.60 E-value=5.5e-07 Score=83.51 Aligned_cols=69 Identities=19% Similarity=0.156 Sum_probs=41.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHH---HHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHE---KHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDR 432 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e---~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~ 432 (470)
.||++|||++|++++++|+.+|+... ..+..+.+.. .|+ +.... -.+||.+. +.+++.+.
T Consensus 125 ~~d~vi~l~~~~e~~~~Rl~~R~~~~----~~~~~~~~~~~~~~~~-~~~~a----d~vId~~~--------~~~~~~~~ 187 (218)
T 1vht_A 125 KANRVLVVDVSPETQLKRTMQRDDVT----REHVEQILAAQATREA-RLAVA----DDVIDNNG--------APDAIASD 187 (218)
T ss_dssp GCSEEEEEECCHHHHHHHHHHHHTCC----HHHHHHHHHHSCCHHH-HHHHC----SEEEECSS--------CTTSHHHH
T ss_pred cCCEEEEEECCHHHHHHHHHHcCCCC----HHHHHHHHHhcCChHH-HHHhC----CEEEECCC--------CHHHHHHH
Confidence 57999999999999999999884211 1122233322 111 11111 26788775 45778888
Q ss_pred HHHhhhhhH
Q 012135 433 VFYLDGPHM 441 (470)
Q Consensus 433 V~~~I~~~L 441 (470)
|.+.+...+
T Consensus 188 I~~~l~~~~ 196 (218)
T 1vht_A 188 VARLHAHYL 196 (218)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776543
No 79
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.60 E-value=1.2e-07 Score=84.31 Aligned_cols=72 Identities=10% Similarity=0.063 Sum_probs=36.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHhc-ccccc--CCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHH
Q 012135 357 PDGFIYLRASPDTCHKRMMLRK-RAEEG--GVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRV 433 (470)
Q Consensus 357 PDLvIyLda~pEv~leRI~kRg-R~~E~--~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V 433 (470)
.+++|||+++++++.+|+.+|+ |+... ..+.+.++.+....+.++... ...+||++.. +++++.+.|
T Consensus 97 ~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r~~~~~~~---a~~~id~~~~-------~~~~~~~~i 166 (173)
T 1kag_A 97 RGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEI---ADVTIRTDDQ-------SAKVVANQI 166 (173)
T ss_dssp HSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHHH---CSEEC------------CHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhh---CCEEEECCCC-------CHHHHHHHH
Confidence 3789999999999999998874 33221 111344443332222222111 2467776642 568888887
Q ss_pred HHhhh
Q 012135 434 FYLDG 438 (470)
Q Consensus 434 ~~~I~ 438 (470)
...+.
T Consensus 167 ~~~l~ 171 (173)
T 1kag_A 167 IHMLE 171 (173)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 76654
No 80
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.58 E-value=3e-07 Score=86.07 Aligned_cols=30 Identities=13% Similarity=0.303 Sum_probs=26.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
|+.++|+|.|..||||||+++.|++. |+..
T Consensus 4 m~~~iI~i~g~~GsGk~ti~~~la~~-lg~~ 33 (201)
T 3fdi_A 4 MKQIIIAIGREFGSGGHLVAKKLAEH-YNIP 33 (201)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH-TTCC
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHH-hCcC
Confidence 66789999999999999999999997 8865
No 81
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.57 E-value=8.1e-08 Score=104.98 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=26.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHhhh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANETL 246 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~~L 246 (470)
.+++++|+|+|.+||||||+++.|++. |
T Consensus 49 ~~~g~lIvLtGlsGSGKSTlAr~La~~-L 76 (630)
T 1x6v_B 49 GFRGCTVWLTGLSGAGKTTVSMALEEY-L 76 (630)
T ss_dssp SCCCEEEEEECSTTSSHHHHHHHHHHH-H
T ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHHH-H
Confidence 468899999999999999999999997 6
No 82
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.55 E-value=1.8e-07 Score=85.20 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++++.|+|.|++||||||+++.|++.
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 456789999999999999999999985
No 83
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.51 E-value=1.2e-06 Score=83.74 Aligned_cols=30 Identities=20% Similarity=0.370 Sum_probs=26.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
++.++|+|.|..||||||+++.|++. |+..
T Consensus 12 ~~~~iI~i~g~~gsGk~~i~~~la~~-lg~~ 41 (223)
T 3hdt_A 12 NKNLIITIEREYGSGGRIVGKKLAEE-LGIH 41 (223)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHH-HTCE
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHH-cCCc
Confidence 34689999999999999999999997 7764
No 84
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.51 E-value=2.7e-06 Score=77.33 Aligned_cols=70 Identities=19% Similarity=0.118 Sum_probs=41.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcH-HHHHHHHHHHHhhcCc-CCCCCeEEEEccCCCcccCCCCchHHHHHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSL-DYLRSLHEKHENWLFP-FESGNHGVLAVSKLPLHIDNGLHPDIRDRV 433 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~~i~~-eYLe~L~e~Ye~w~~~-~~~~~v~VIDvd~lD~~~~~~~~eev~d~V 433 (470)
.+|++|||++|++++++|+.+|.. .+. +..+.+.......... .......+||.+.. +.+++.+.|
T Consensus 135 ~~d~~i~l~a~~e~~~~R~~~r~~-----~~~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~-------~~ee~~~~I 202 (208)
T 3ake_A 135 EAAHKFYLTASPEVRAWRRARERP-----QAYEEVLRDLLRRDERDKAQSAPAPDALVLDTGGM-------TLDEVVAWV 202 (208)
T ss_dssp TCSEEEEEECCHHHHHHHHHHTSS-----SCHHHHHHHHHHHHHTC--CCCCCTTCEEEETTTS-------CHHHHHHHH
T ss_pred CCcEEEEEECCHHHHHHHHHhhcc-----cCHHHHHHHHHHHHHHHhhcccCCCCEEEEECCCC-------CHHHHHHHH
Confidence 579999999999999999998854 122 2222332211111111 11123478887753 457888877
Q ss_pred HHhh
Q 012135 434 FYLD 437 (470)
Q Consensus 434 ~~~I 437 (470)
.+.+
T Consensus 203 ~~~~ 206 (208)
T 3ake_A 203 LAHI 206 (208)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 85
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.47 E-value=1.5e-06 Score=80.36 Aligned_cols=30 Identities=33% Similarity=0.581 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
|++++|+|.|.+||||||+++.|++. ++..
T Consensus 1 m~~~~i~i~G~~gsGkst~~~~l~~~-~g~~ 30 (219)
T 2h92_A 1 MKAINIALDGPAAAGKSTIAKRVASE-LSMI 30 (219)
T ss_dssp --CCCEEEECCTTSSHHHHHHHHHHH-TTCE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh-cCCc
Confidence 56789999999999999999999986 6643
No 86
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.40 E-value=4.2e-06 Score=77.13 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
++++|+|.|++||||||+++.|++. +.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~-~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE-FP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH-CT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh-Cc
Confidence 6789999999999999999999986 53
No 87
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.39 E-value=4.8e-06 Score=78.59 Aligned_cols=30 Identities=30% Similarity=0.482 Sum_probs=26.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
+.++++|+|.|.+||||||+++.|++. |+.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~-lg~ 42 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD-FGF 42 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH-HCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH-cCC
Confidence 567889999999999999999999986 664
No 88
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.39 E-value=2.1e-06 Score=84.11 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
.++++|+|+|++||||||+++.|++ ++.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~--lg~ 100 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN--LGA 100 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH--HTC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--CCC
Confidence 3568999999999999999999994 564
No 89
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.39 E-value=4.5e-06 Score=80.63 Aligned_cols=80 Identities=15% Similarity=0.142 Sum_probs=44.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccCCcH-HHHHHHHHH----HHhhcCcCCCC-CeEEEEccCCCcccCCCCchHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGGVSL-DYLRSLHEK----HENWLFPFESG-NHGVLAVSKLPLHIDNGLHPDI 429 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~~i~~-eYLe~L~e~----Ye~w~~~~~~~-~v~VIDvd~lD~~~~~~~~eev 429 (470)
..++.|||++|++++.+|..++....-...+. +-++.+.+. ..++..+.... ..++||++.++ .+++
T Consensus 145 da~lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l~-------iee~ 217 (233)
T 3r20_A 145 DADVKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDMD-------QAQV 217 (233)
T ss_dssp TCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTSC-------HHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCCC-------HHHH
Confidence 35799999999999999986531110001121 222222211 12233333322 33899999865 4999
Q ss_pred HHHHHHhhhhhHH
Q 012135 430 RDRVFYLDGPHMH 442 (470)
Q Consensus 430 ~d~V~~~I~~~L~ 442 (470)
++.|+.++..++.
T Consensus 218 v~~I~~~i~~~~~ 230 (233)
T 3r20_A 218 IAHLLDLVTAQAG 230 (233)
T ss_dssp HHHHHHHC-----
T ss_pred HHHHHHHHHHhhc
Confidence 9999998887653
No 90
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.36 E-value=3.3e-06 Score=80.05 Aligned_cols=29 Identities=34% Similarity=0.415 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
++.+|+|.|++||||||+++.|+++ ++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~-lg~~ 54 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQN-FGLQ 54 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH-HCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-hCCe
Confidence 5789999999999999999999987 6654
No 91
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.32 E-value=1.5e-06 Score=79.36 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhcc
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKR 379 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR 379 (470)
.+|.+|||++|++++++|+.+|+.
T Consensus 123 ~~~~~i~l~~~~e~~~~Rl~~R~~ 146 (204)
T 2if2_A 123 NYDKLIVVYAPYEVCKERAIKRGM 146 (204)
T ss_dssp GSSEEEEECCCHHHHHHHHHHTCC
T ss_pred hCCEEEEEECCHHHHHHHHHHcCC
Confidence 478999999999999999999854
No 92
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.27 E-value=9.2e-06 Score=74.53 Aligned_cols=77 Identities=18% Similarity=0.219 Sum_probs=49.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHh-----ccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHH
Q 012135 356 IPDGFIYLRASPDTCHKRMMLR-----KRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIR 430 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kR-----gR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~ 430 (470)
..|.+||||++.++.+.|..+| |+..+. +...|...+...|..|+.++....-.+|+.+. ..++..
T Consensus 124 ~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~-~~~~~~~~~~~~~~~~~~~~~~~aD~ii~~~~--------~~~~~~ 194 (211)
T 3asz_A 124 LMDLKVFVDADADERFIRRLKRDVLERGRSLEG-VVAQYLEQVKPMHLHFVEPTKRYADVIVPRGG--------QNPVAL 194 (211)
T ss_dssp TCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHH-HHHHHHHTHHHHHHHTTGGGGGGCSEEEESTT--------SCHHHH
T ss_pred hcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHH-HHHHHHHhhhhhHHHhcccchhcCeEEEeCCC--------cchHHH
Confidence 4699999999999987776544 333221 23456777888898888876543334555442 346677
Q ss_pred HHHHHhhhhhH
Q 012135 431 DRVFYLDGPHM 441 (470)
Q Consensus 431 d~V~~~I~~~L 441 (470)
+.+...|.+.+
T Consensus 195 ~~~~~~i~~~~ 205 (211)
T 3asz_A 195 EMLAAKALARL 205 (211)
T ss_dssp HHHHHHHTHHH
T ss_pred HHHHHHHHHHH
Confidence 77766665444
No 93
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.26 E-value=1.2e-05 Score=73.81 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
.++.+|+|.|+.||||||+++.|++. +.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~-l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM-LY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH-HH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH-HH
Confidence 46889999999999999999999987 64
No 94
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.24 E-value=6e-06 Score=75.68 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
++|+|.|++||||||+++.|++ ++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~--lg~ 27 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD--LGV 27 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT--TTC
T ss_pred cEEEEECCCCCCHHHHHHHHHH--CCC
Confidence 5799999999999999999986 554
No 95
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.20 E-value=1.7e-05 Score=71.98 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++.+|+|.|++||||||+++.|+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 6789999999999999999999975
No 96
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.18 E-value=1.5e-06 Score=93.38 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
++++|+|+|.+||||||+++.|++. |+..
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~-L~~~ 399 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATM-LQAR 399 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH-HHHT
T ss_pred cceEEEccCCCCCCHHHHHHHHHHH-hhhc
Confidence 4789999999999999999999997 6543
No 97
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.14 E-value=3.1e-06 Score=80.70 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
.-|.+.|.+||||||+++.|++ ++..
T Consensus 10 ~~iglTGgigsGKStv~~~l~~--~g~~ 35 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA--RGAS 35 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH--TTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHH--CCCc
Confidence 3589999999999999999997 5654
No 98
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.13 E-value=2.8e-06 Score=91.83 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=26.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
.++++|+|+|.+||||||+++.|++. |+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~-L~~ 422 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVT-LNQ 422 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH-HHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHH-hcc
Confidence 46789999999999999999999997 664
No 99
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.13 E-value=7.6e-06 Score=76.31 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
..++|+|.|.+||||||+++.|++. ++..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~-lg~~ 39 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK-YGAH 39 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH-HCCE
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh-cCCE
Confidence 3578999999999999999999986 6653
No 100
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.11 E-value=3.8e-08 Score=101.39 Aligned_cols=50 Identities=14% Similarity=0.010 Sum_probs=42.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccccC-----CcHHHHHHHHHHHHhhcCcCC
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEEGG-----VSLDYLRSLHEKHENWLFPFE 405 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E~~-----i~~eYLe~L~e~Ye~w~~~~~ 405 (470)
.||++|||++|++++++||.+||+..+.. ...+|++.++..|+.|+..+.
T Consensus 300 ~pDLliyLd~~~~~l~~RL~~Rg~t~~~~l~~~~~~~dy~~~l~~~~~~w~~~l~ 354 (377)
T 1svm_A 300 KDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPVAEFAQSIQSRIVEWKERLD 354 (377)
T ss_dssp CHHHHHHHHTCTHHHHTTCTTCHHHHHHHHHHHSCGGGSCGGGHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHcCccHHHhhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999877641 235788899999999987653
No 101
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.03 E-value=3.7e-05 Score=79.39 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=30.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhccccc--cCCcHHHHHHHHHHHHh
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRKRAEE--GGVSLDYLRSLHEKHEN 399 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRgR~~E--~~i~~eYLe~L~e~Ye~ 399 (470)
.+-.+|||++|+++|++|+.+|++... ..++.+.+.++...|+.
T Consensus 336 ~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~ 381 (416)
T 3zvl_A 336 VPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEP 381 (416)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCCC
T ss_pred CeEEEEEEeCCHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhcCC
Confidence 345899999999999999999976321 13455656666555553
No 102
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.93 E-value=6.7e-06 Score=81.19 Aligned_cols=48 Identities=17% Similarity=0.025 Sum_probs=34.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHh-----ccccccCCcHHHHHHHHHHHHhhcCcCC
Q 012135 356 IPDGFIYLRASPDTCHKRMMLR-----KRAEEGGVSLDYLRSLHEKHENWLFPFE 405 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kR-----gR~~E~~i~~eYLe~L~e~Ye~w~~~~~ 405 (470)
..|++|||++|.+++++|..+| |...|. +...+..+ ...|++|+.+..
T Consensus 147 ~~D~~IfV~a~~~~rl~Rrl~Rd~~~RG~s~e~-v~~~i~~r-~~~~~r~i~p~~ 199 (290)
T 1a7j_A 147 LADLKIGVVPVINLEWIQKIHRDRATRGYTTEA-VTDVILRR-MHAYVHCIVPQF 199 (290)
T ss_dssp GCSEEEEEEECHHHHHHHHHHHTSSSCCSCCCC-HHHHHHHH-HHHHHHHTGGGG
T ss_pred hCCEEEEEECCHHHHHHHHhhhhhhhcCCChHH-HHHHHHHh-CccHHHhhhhhh
Confidence 5699999999999999997766 444443 33455566 667777766654
No 103
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.88 E-value=0.0001 Score=72.44 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=25.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+.+++++|+|.|++||||||+++.|+++
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999999986
No 104
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.82 E-value=0.00011 Score=66.23 Aligned_cols=66 Identities=23% Similarity=0.135 Sum_probs=37.5
Q ss_pred cEEEEEeCCHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhcCcCCCCCeEEEEccCCCcccCCCCchHHHHHHH
Q 012135 358 DGFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRSLHEKHENWLFPFESGNHGVLAVSKLPLHIDNGLHPDIRDRVF 434 (470)
Q Consensus 358 DLvIyLda~pEv~leRI~kRgR~~E~~i~~eYLe~L~e~Ye~w~~~~~~~~v~VIDvd~lD~~~~~~~~eev~d~V~ 434 (470)
-.+|+|+++++++++|+..|... + ..+...+.. .+.+..+. . ....+|+++..|+ .+.+++.++|+
T Consensus 103 ~~~i~L~~~~e~l~~R~~~r~~d-~-~ld~~~~~~-~~~~~~~~---~-~~~~ii~tsh~~~----~~~e~~~~~i~ 168 (189)
T 2bdt_A 103 IRFIILWTNREELLRRDALRKKD-E-QMGERCLEL-VEEFESKG---I-DERYFYNTSHLQP----TNLNDIVKNLK 168 (189)
T ss_dssp EEEEEEECCHHHHHHHTTTSCC------CGGGGHH-HHHHHHTT---C-CTTSEEECSSSCG----GGHHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHhcccc-c-cCCHHHHHH-HHHHhhcC---C-CccEEEeCCCCCh----hhHHHHHHHHh
Confidence 35789999999999999988653 1 233333333 33334332 1 2346777765311 13466677766
No 105
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.74 E-value=0.00012 Score=67.60 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
.++.+|+|.|+.|||||||++.|+.. +.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~-~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA-LS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH-HH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH-Hh
Confidence 56889999999999999999999986 54
No 106
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.71 E-value=0.0001 Score=68.26 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++.+|+|.|+.||||||+++.|++.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 5789999999999999999999986
No 107
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.71 E-value=0.00033 Score=66.90 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=26.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
...++++|+|.|.+||||||+++.|++. ++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~-l~ 57 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKE-FQ 57 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHH-TT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHh-cC
Confidence 3467789999999999999999999987 65
No 108
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.59 E-value=0.00033 Score=69.21 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=25.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
..++.+|+|.|+.||||||+++.|+.. +.
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~-l~ 105 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQAL-LS 105 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHH-HT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH-Hh
Confidence 357889999999999999999999985 44
No 109
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.54 E-value=0.00042 Score=62.80 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 221 RITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+.+|+|.|+.||||||++++|...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357899999999999999999975
No 110
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.53 E-value=0.00042 Score=64.51 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 012135 222 ITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..|+|.|+.||||||+++.|.+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999875
No 111
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.35 E-value=0.001 Score=71.73 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
.++.+|+|.|..||||||+++.|++. +.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~-L~ 394 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAAR-LM 394 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHH-HH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHh-hc
Confidence 47899999999999999999999987 54
No 112
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.29 E-value=0.0018 Score=69.03 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELRD 250 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~ 250 (470)
++.+|++.|.+||||||+++.|++. |++..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~-L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRY-LNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH-HHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HhhcC
Confidence 5679999999999999999999987 76543
No 113
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.27 E-value=0.00026 Score=71.61 Aligned_cols=103 Identities=22% Similarity=0.287 Sum_probs=60.1
Q ss_pred CCeeeccCCCcchHHHHHhhccchHHHHH-----HHHHHHHH--HhhHHHHHhhhccc---cccc-------ccchhhhh
Q 012135 134 PDLLTIPGVGPRNLRKLVDNGIGDVAELK-----QLYKDKFW--EASQKMIEYLQSSV---GIIH-------KNHAESIT 196 (470)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~l~~~~---~~~~-------~~~~~~~~ 196 (470)
-+|-.+|||||.-..||.+.||.++.++- +|.+-+=. ...+++++.....+ +|.. +.....|.
T Consensus 35 ~~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~is 114 (349)
T 1pzn_A 35 RSIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAANLGTFMRADEYLKKRATIGRIS 114 (349)
T ss_dssp CCSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHHHCSTTSCEEHHHHHHHHHTCCEEC
T ss_pred ccHHHcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHhhhccccCCccHHHHHhhhccCCeec
Confidence 35667799999999999999999998885 34332211 11122222222221 2211 11111122
Q ss_pred hhhhhhhhhhhccCCCCCCCCCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 197 TFIKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 197 ~~i~~~~~~~~~~~~~~~~~~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+-++ ..|..|. -.-.++.++.|.|..|||||||+..|+..
T Consensus 115 TG~~-~LD~lL~-------ggi~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 115 TGSK-SLDKLLG-------GGIETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp CSCH-HHHHHHT-------SSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCH-HHHHHhc-------CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 2221 1222221 12347889999999999999999999975
No 114
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.14 E-value=0.00025 Score=64.12 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+++.+|+|.|++||||||+++.|++.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56889999999999999999999985
No 115
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.01 E-value=0.00037 Score=62.79 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+++++|+|.|.+||||||+++.|++.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 356789999999999999999999984
No 116
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.83 E-value=0.00063 Score=60.93 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++.+|+|.|+.||||||+++.|++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 356889999999999999999999975
No 117
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.67 E-value=0.0011 Score=59.93 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++.+|+|.|+.||||||+++.|...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46789999999999999999999985
No 118
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.66 E-value=0.0011 Score=62.71 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=25.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
..++.+|+|.|+.||||||+++.|+.. ++
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~-lG 50 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMEL-LG 50 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHH-HT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH-hc
Confidence 457889999999999999999999986 55
No 119
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.46 E-value=0.038 Score=57.51 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=25.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
.++++|++.|.+||||||+++.|++. ++..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~-l~~~ 66 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRY-LNFI 66 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH-HHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH-Hhcc
Confidence 45679999999999999999999986 6543
No 120
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.45 E-value=0.0019 Score=60.75 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=25.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+.+++.+|+|.|+.|||||||++.|.+.
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 5578999999999999999999999976
No 121
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.41 E-value=0.0021 Score=58.99 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++.+|+|.|+.||||||+++.|+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999986
No 122
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.41 E-value=0.0023 Score=63.15 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
.++.+|+|.|+.||||||+++.|++. +.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~-l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH-LM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH-HH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH-hh
Confidence 56889999999999999999999986 54
No 123
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.38 E-value=0.0066 Score=60.25 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=25.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
...++.+|+|-|+.||||||+++.|+..
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999999986
No 124
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.37 E-value=0.006 Score=65.13 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=35.9
Q ss_pred hhhhhhhhhhhhhhccCCCCCCCCCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 194 SITTFIKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 194 ~~~~~i~~~~~~~~~~~~~~~~~~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.|-+.+.+.+.+.|...+....-...++.+|+|-|..||||||+++.|+..
T Consensus 266 ~~~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 266 ALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp GHHHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHH
Confidence 344455555555554433322224567899999999999999999999975
No 125
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.26 E-value=0.0025 Score=61.15 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
++|+|.|+.||||||+++.|+++ ++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~-~~~ 27 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE-TGW 27 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH-HCC
T ss_pred eEEEEECCCCcCHHHHHHHHHhc-CCC
Confidence 47999999999999999999987 664
No 126
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.22 E-value=0.0017 Score=60.63 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=19.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHH-Hh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIA-NE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLA-k~ 244 (470)
..++.+|+|.|++||||||+++.|+ ..
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC--
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3578899999999999999999999 74
No 127
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.05 E-value=0.012 Score=60.02 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=25.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
...++.+|+|-|+.||||||+++.|+..
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 3457899999999999999999999986
No 128
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.03 E-value=0.0021 Score=63.28 Aligned_cols=103 Identities=22% Similarity=0.287 Sum_probs=56.3
Q ss_pred CCeeeccCCCcchHHHHHhhccchHHHHHHHHHHHHHH-------hhHHHHHhhhcc--ccccccc-------chhhhhh
Q 012135 134 PDLLTIPGVGPRNLRKLVDNGIGDVAELKQLYKDKFWE-------ASQKMIEYLQSS--VGIIHKN-------HAESITT 197 (470)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~--~~~~~~~-------~~~~~~~ 197 (470)
.||..+|||+|.-..||.+.||.++.+|-.+=.+..-+ ..++++...... .+|..-. ....|.+
T Consensus 3 ~~~~~l~gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~i~T 82 (322)
T 2i1q_A 3 DNLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLGFKSGIDLLKQRSTVWKLST 82 (322)
T ss_dssp --CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHHHTTCSCCCTHHHHHHHTTCCEECC
T ss_pred ccHhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHHHhhhhcCCcHHHHHHHhccCCeecC
Confidence 47888999999999999999999999986433222221 111121111111 1111000 0000101
Q ss_pred hhhhhhhhhhccCCCCCCCCCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 198 FIKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 198 ~i~~~~~~~~~~~~~~~~~~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-++ ..|..| .-.-.++.++.|.|..|+||||++..|+..
T Consensus 83 G~~-~LD~~l-------~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 83 SSS-ELDSVL-------GGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SCH-HHHHHT-------TSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCh-hHHHhc-------CCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 110 111111 001236789999999999999999999864
No 129
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=95.98 E-value=0.0022 Score=64.99 Aligned_cols=73 Identities=22% Similarity=0.378 Sum_probs=55.0
Q ss_pred CCCCeeeccCCCcchHHHHHhhccchHHHHHHHHHHHHHHhhHHHHHhhhcccccccccchhhhhhhhhhhhhh
Q 012135 132 GNPDLLTIPGVGPRNLRKLVDNGIGDVAELKQLYKDKFWEASQKMIEYLQSSVGIIHKNHAESITTFIKDSVDE 205 (470)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 205 (470)
+--+|+.||||||+..++|.+.||.++++|+++ ..+.-+.-..=+.++...-+=+.+..|+.|+..|.+...+
T Consensus 96 ~l~~l~~V~GiGpk~a~~l~~~Gi~tledL~~a-~~~l~~~~~~gl~~~~~~~~ripr~ea~~ia~~i~~~l~~ 168 (335)
T 2fmp_A 96 SINFLTRVSGIGPSAARKFVDEGIKTLEDLRKN-EDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKK 168 (335)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHTTCCSHHHHHTC-GGGSCHHHHHHHHTHHHHTSCEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHcCCCCHHHHHHh-hhhhHHHHHHHHHHHHHhcCcEEHHHHHHHHHHHHHHHHh
Confidence 345789999999999999999999999999986 4444332222244454444567899999999888888743
No 130
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.93 E-value=0.0035 Score=57.61 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++.+|+|-|+.||||||++++|...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4678999999999999999999875
No 131
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.84 E-value=0.0048 Score=56.37 Aligned_cols=25 Identities=32% Similarity=0.609 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
|.|+|.|+.||||||+++.|+.. ++
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~-l~ 25 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER-LG 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH-HG
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-hC
Confidence 57899999999999999999986 54
No 132
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.83 E-value=0.0062 Score=60.68 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=25.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
...++.+|+|.|+.|||||||++.|+..
T Consensus 86 ~~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 86 DRPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SSCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 3567899999999999999999999985
No 133
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.82 E-value=0.0058 Score=61.47 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=25.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
..++.+|+|.|+.||||||+++.|+.. +.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l-l~ 117 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL-LS 117 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH-HT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH-hc
Confidence 356789999999999999999999985 54
No 134
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.76 E-value=0.005 Score=57.55 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++.+++|-|+.||||||++++|...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 356889999999999999999999985
No 135
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.72 E-value=0.014 Score=57.95 Aligned_cols=27 Identities=30% Similarity=0.285 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++.+|+|-|+.||||||+++.|+..
T Consensus 99 ~~~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 99 EPKGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp CCSSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 346889999999999999999999976
No 136
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.71 E-value=0.0061 Score=57.63 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++.+|+|.|+.|||||||++.|...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 36789999999999999999999985
No 137
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.70 E-value=0.0064 Score=55.89 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=23.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
...++.+++|-|+.||||||+++.|+..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4567899999999999999999999975
No 138
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.70 E-value=0.0072 Score=54.40 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|.|+.|||||||++.|+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56789999999999999999999986
No 139
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.66 E-value=0.028 Score=55.92 Aligned_cols=48 Identities=23% Similarity=0.204 Sum_probs=32.4
Q ss_pred hhhhhhhhhhhhhccCCCCCCC-CCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 195 ITTFIKDSVDEELKDSNSDDKP-APKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 195 ~~~~i~~~~~~~~~~~~~~~~~-~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+-..+.+.+.+.+.... +.. ...++.+|+|.|..||||||++..|+..
T Consensus 79 ~~~~~~~~l~~~l~~~~--~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 79 ALESLKEIILEILNFDT--KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp HHHHHHHHHHHHTCSCC--CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC--CCcccCCCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 33444444444443322 211 3456789999999999999999999976
No 140
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.62 E-value=0.0081 Score=64.19 Aligned_cols=29 Identities=7% Similarity=0.204 Sum_probs=26.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
.+++.|+|.|..||||||+++.|++. |+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~-L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLST-FLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHH-HTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHH-HHH
Confidence 46789999999999999999999998 774
No 141
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.61 E-value=0.0066 Score=61.41 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
|++++|+|.|+.||||||++..|++. ++
T Consensus 1 m~~~~i~i~GptgsGKt~la~~La~~-~~ 28 (322)
T 3exa_A 1 MKEKLVAIVGPTAVGKTKTSVMLAKR-LN 28 (322)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHT-TT
T ss_pred CCCcEEEEECCCcCCHHHHHHHHHHh-Cc
Confidence 57789999999999999999999987 54
No 142
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.53 E-value=0.007 Score=54.21 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIA 242 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLA 242 (470)
.++-+++|-|+.||||||+++.+.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHc
Confidence 367899999999999999999754
No 143
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=95.40 E-value=0.0071 Score=61.25 Aligned_cols=68 Identities=12% Similarity=0.254 Sum_probs=51.5
Q ss_pred CCee-eccCCCcchHHHHHhhccchHHHHHHHHHHHHHHhhHHH-HHhhhcccccccccchhhhhhhhhhhhh
Q 012135 134 PDLL-TIPGVGPRNLRKLVDNGIGDVAELKQLYKDKFWEASQKM-IEYLQSSVGIIHKNHAESITTFIKDSVD 204 (470)
Q Consensus 134 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 204 (470)
.+|| .||||||+..++|.+.||.++++|++.-+. +..+++ +.+....-+=+.+..|+.|+..|.+...
T Consensus 95 l~ll~~v~GiG~k~a~~l~~~Gi~tledL~~a~~~---k~~q~Igl~~~~~~~~ripr~ea~~ia~~i~~~l~ 164 (335)
T 2bcq_A 95 LELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASL---TTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQ 164 (335)
T ss_dssp HHHHHTSTTCCHHHHHHHHHTTCCSHHHHHHHCCC---CHHHHHHHHTTTGGGCCEEHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHHHcCCCCHHHHHHHhcc---cHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHHHH
Confidence 4567 999999999999999999999999986544 333333 4444444455788899998888887773
No 144
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.30 E-value=0.0099 Score=54.91 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
.++-+++|.|+.|||||||++.|+.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4788999999999999999999984
No 145
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.30 E-value=0.0094 Score=59.87 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 221 RITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..++|-|..|||||||++.|+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999975
No 146
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.27 E-value=0.013 Score=60.47 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
.++-++.|.|..|||||||+..|+-
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3688999999999999999998764
No 147
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.25 E-value=0.067 Score=55.95 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=33.0
Q ss_pred hhhhhhhhhhhccCCCCCCCCCCCCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 197 TFIKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 197 ~~i~~~~~~~~~~~~~~~~~~~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
..+.+...+.|............++.+|+|.|..||||||++..|+.. +..
T Consensus 73 ~~v~~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~-l~~ 123 (433)
T 3kl4_A 73 SIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYF-YKK 123 (433)
T ss_dssp HHHHHHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHHH-HHH
Confidence 334444434443322222223346899999999999999999999976 543
No 148
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.24 E-value=0.0095 Score=53.08 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++..+.|.|+.|+||||+++.|+..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999986
No 149
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.21 E-value=0.01 Score=60.44 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
++++|+|.|+.|||||||+..|+++ ++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~-l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH-FP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT-SC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH-CC
Confidence 5579999999999999999999997 65
No 150
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.17 E-value=0.012 Score=59.84 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
++|+|.|+.||||||+++.|++. ++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~-l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK-FN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH-TT
T ss_pred ceEEEECCCcCcHHHHHHHHHHH-cC
Confidence 58999999999999999999997 65
No 151
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.13 E-value=0.012 Score=53.68 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|.|+.|||||||++.|+..
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
No 152
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.10 E-value=0.013 Score=59.14 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
+++|+|.|+.||||||+++.|+++ ++
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~-l~ 30 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADA-LP 30 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH-cC
Confidence 358999999999999999999997 65
No 153
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.04 E-value=0.015 Score=58.37 Aligned_cols=102 Identities=19% Similarity=0.227 Sum_probs=27.7
Q ss_pred Ceeecc--CCCcchHHHHHhhccchHHHHHHHHHHHHH---HhhH----HHHHhhhcc--ccccc-------ccchhhhh
Q 012135 135 DLLTIP--GVGPRNLRKLVDNGIGDVAELKQLYKDKFW---EASQ----KMIEYLQSS--VGIIH-------KNHAESIT 196 (470)
Q Consensus 135 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~l~~~--~~~~~-------~~~~~~~~ 196 (470)
+|-.+| ||+|.-..||.+.||.++.++-.+=+.+.- ..++ ++.+..... .+|.. +.....|.
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~is~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~ 105 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHIT 105 (343)
T ss_dssp ------------------------------------------------------------CCSEEHHHHHHHGGGCCCBC
T ss_pred cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCCCHHHHHHHHHHHHhhcccCCCcHHHHHhhhcccceee
Confidence 344445 999999999999999999888643222221 1111 111111110 11110 00001111
Q ss_pred hhhhhhhhhhhccCCCCCCCCCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 197 TFIKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 197 ~~i~~~~~~~~~~~~~~~~~~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+-++. .|..|. -.-.++.++.|.|..|+||||++..|+..
T Consensus 106 TG~~~-LD~~Lg-------GGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 106 TGSQE-FDKLLG-------GGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSCHH-HHHHTT-------SSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred cCChh-HHHHhc-------CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 11111 222221 12346789999999999999999999875
No 154
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.97 E-value=0.0053 Score=60.86 Aligned_cols=106 Identities=15% Similarity=0.214 Sum_probs=26.6
Q ss_pred CCCCCeeeccCCCcchHHHHHhhccchHHHHHHHHHHHHH---HhhHH----HHHhhhc--cccccccc-------chhh
Q 012135 131 VGNPDLLTIPGVGPRNLRKLVDNGIGDVAELKQLYKDKFW---EASQK----MIEYLQS--SVGIIHKN-------HAES 194 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~l~~--~~~~~~~~-------~~~~ 194 (470)
.+..||-.+|||+|.-..||.+.||.++.++-.+=....- ..++. +.+.... ..+|..-. ....
T Consensus 9 ~~~~~~~~l~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (324)
T 2z43_A 9 KNIKTINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRFKTALEVKKERMNVKK 88 (324)
T ss_dssp ---------------------------------------------------------------CCCCHHHHHHHHCSCCE
T ss_pred CCCccHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHhhCCCHHHHHHHHHHHHhhcccCccchhhhhhhhccCCc
Confidence 3445777889999999999999999999887533221111 11111 1111111 01111000 0001
Q ss_pred hhhhhhhhhhhhhccCCCCCCCCCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 195 ITTFIKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 195 ~~~~i~~~~~~~~~~~~~~~~~~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
|.+-++ ..|..| .-.-.++.++.|.|..|+||||++..|+..
T Consensus 89 i~TG~~-~LD~~L-------~GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 89 ISTGSQ-ALDGLL-------AGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp ECCSCH-HHHHHT-------TTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCch-hHHHhc-------CCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 111111 111111 011236789999999999999999999875
No 155
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.92 E-value=0.012 Score=55.96 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
..++-+++|-|+.|||||||++.|+.
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 35788999999999999999999985
No 156
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.90 E-value=0.012 Score=55.43 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
.++-+++|-|+.|||||||++.|+.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999999985
No 157
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.87 E-value=0.049 Score=53.70 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
.++.+|+|.|+.||||||++..|+.. +.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~-l~ 130 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAI-SM 130 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHH-HH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-HH
Confidence 46789999999999999999999976 44
No 158
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=94.86 E-value=0.014 Score=56.40 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
++|+|.|.+||||||+++.|+++ +++
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~-~g~ 27 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN-YSA 27 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH-SCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHh-cCC
Confidence 58999999999999999999985 553
No 159
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.85 E-value=0.069 Score=53.35 Aligned_cols=30 Identities=30% Similarity=0.329 Sum_probs=25.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
...++.+|+|.|..|+||||++..|+.. +.
T Consensus 101 ~~~~~~vI~ivG~~G~GKTT~~~~LA~~-l~ 130 (320)
T 1zu4_A 101 KENRLNIFMLVGVNGTGKTTSLAKMANY-YA 130 (320)
T ss_dssp CTTSCEEEEEESSTTSSHHHHHHHHHHH-HH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHH-HH
Confidence 3457889999999999999999999986 44
No 160
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.85 E-value=0.013 Score=55.82 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|+.|||||||++.|+..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999999863
No 161
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.82 E-value=0.014 Score=55.37 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++.+++|-|+.|||||||++.|+..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47889999999999999999999863
No 162
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.73 E-value=0.017 Score=55.35 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
.++-+++|-|+.|||||||++.|+.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4788999999999999999999985
No 163
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=94.72 E-value=0.018 Score=59.42 Aligned_cols=71 Identities=20% Similarity=0.316 Sum_probs=50.5
Q ss_pred CCCCeeeccCCCcchHHHHHhhccchHHHHHHHHHHHHHHhhHH---HHHhhhcccccccccchhhhhhhhhhhhhh
Q 012135 132 GNPDLLTIPGVGPRNLRKLVDNGIGDVAELKQLYKDKFWEASQK---MIEYLQSSVGIIHKNHAESITTFIKDSVDE 205 (470)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 205 (470)
+-.+|+.||||||+-.++|.+.||.+++||++ ++=.|..+. =+.+....-.=+.|..|+.|+..|.+...+
T Consensus 119 ~l~~l~~I~GvGpk~a~~ly~~Gi~tledL~~---~~g~kl~~~q~~Gl~~~~d~~~ripr~ea~~ia~~i~~~l~~ 192 (381)
T 1jms_A 119 SFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQS---DKSLRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVT 192 (381)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHH---CSSCCCCHHHHHHHHTHHHHHSCBCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCHHHHHHHHHcCCCcHHHHHh---CcccchHHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHHHHh
Confidence 34578999999999999999999999999996 110011111 133333333447899999999988888744
No 164
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.68 E-value=0.015 Score=55.77 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=23.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
..++-+++|-|+.|||||||++.|+.
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34788999999999999999999985
No 165
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.65 E-value=0.016 Score=55.28 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|+.|||||||++.|+..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999999863
No 166
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.63 E-value=0.016 Score=55.23 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|-|+.|||||||++.|+..
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999863
No 167
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.61 E-value=0.02 Score=55.40 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+|+|.|+.||||||+++.|...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 56789999999999999999999985
No 168
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.60 E-value=0.024 Score=49.07 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 221 RITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..|.|.|..|+||||+++.+++.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999987
No 169
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.56 E-value=0.023 Score=57.29 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
++.+|+|.|+.||||||++..|++. ++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~-~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI-LP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH-SC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh-CC
Confidence 4578999999999999999999997 55
No 170
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.52 E-value=0.02 Score=55.52 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
..++-+++|-|+.|||||||++.|+.
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35788999999999999999999986
No 171
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=94.51 E-value=0.0091 Score=61.03 Aligned_cols=72 Identities=17% Similarity=0.301 Sum_probs=49.4
Q ss_pred CCCCeeeccCCCcchHHHHHhhccchHHHHHHHHHHHHHHhhHHHHHhhhcccccccccchhhhhhhhhhhhh
Q 012135 132 GNPDLLTIPGVGPRNLRKLVDNGIGDVAELKQLYKDKFWEASQKMIEYLQSSVGIIHKNHAESITTFIKDSVD 204 (470)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 204 (470)
+--+|+.||||||+..++|.+.||.++++|+ ....+.=..-..=+.+....-.=+.|..|+.|+..|.+...
T Consensus 100 ~l~~l~~I~GvG~kta~~l~~~Gi~tledL~-~~~~~L~~~~~~Gl~~~~d~~~ripr~ea~~i~~~i~~~l~ 171 (360)
T 2ihm_A 100 TMKLFTQVFGVGVKTANRWYQEGLRTLDELR-EQPQRLTQQQKAGLQYYQDLSTPVRRADAEALQQLIEAAVR 171 (360)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHTTCCSHHHHH-TCCTTCCHHHHHHHHTHHHHHSCEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHcCCCCHHHHH-hcccchHHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999999999998 22222211011113333333344789999999888887774
No 172
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.49 E-value=0.018 Score=55.71 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|+.|||||||++.|+..
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 357889999999999999999999863
No 173
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.49 E-value=0.023 Score=51.54 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++.+++|.|..||||||+++.|+..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999964
No 174
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.48 E-value=0.018 Score=55.44 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|-|+.|||||||++.|+..
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47889999999999999999999863
No 175
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.48 E-value=0.016 Score=54.73 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
.++-+++|-|+.|||||||++.|+.
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999999985
No 176
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.46 E-value=0.018 Score=56.03 Aligned_cols=27 Identities=19% Similarity=0.080 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|+.|||||||++.|+..
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999999863
No 177
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.42 E-value=0.019 Score=55.61 Aligned_cols=27 Identities=30% Similarity=0.267 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|+.|||||||++.|+..
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999999999863
No 178
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.41 E-value=0.019 Score=55.59 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|+.|||||||++.|+..
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999999863
No 179
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.40 E-value=0.025 Score=56.48 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++.+|+|-|+.|||||||+++|...
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 457889999999999999999999985
No 180
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.40 E-value=0.019 Score=56.28 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|+.|||||||++.|+..
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 357889999999999999999999863
No 181
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.39 E-value=0.019 Score=55.80 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|-|+.|||||||++.|+..
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 57889999999999999999999863
No 182
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.33 E-value=0.022 Score=52.57 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 012135 222 ITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+|+|.|+.||||||+++.|+..
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 47899999999999999999986
No 183
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.32 E-value=0.02 Score=55.13 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|-|+.|||||||++.|+..
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 47889999999999999999999864
No 184
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.28 E-value=0.022 Score=55.15 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|+.|||||||++.|+..
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 357889999999999999999999863
No 185
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.27 E-value=0.021 Score=55.54 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|+.|||||||++.|+..
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 357889999999999999999999863
No 186
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.27 E-value=0.029 Score=50.90 Aligned_cols=27 Identities=11% Similarity=0.223 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
.+..|.|.|+.|+||||+++.+++. +.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~-~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR-AN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH-HH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH-HH
Confidence 4567899999999999999999987 44
No 187
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.23 E-value=0.022 Score=54.92 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|-|+.|||||||++.|+..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999999863
No 188
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.20 E-value=0.029 Score=49.19 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
.|+...|+|-|..|+|||||++.|..
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46778999999999999999999986
No 189
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.17 E-value=0.023 Score=55.72 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|-|+.|||||||++.|+..
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 47889999999999999999999863
No 190
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.15 E-value=0.019 Score=53.79 Aligned_cols=24 Identities=21% Similarity=0.063 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 220 KRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
++-+++|-|+.|||||||++.|+.
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 467899999999999999999986
No 191
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.13 E-value=0.03 Score=50.67 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
.++.+++|.|..||||||++..|+.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999986
No 192
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.12 E-value=0.039 Score=53.81 Aligned_cols=31 Identities=13% Similarity=0.181 Sum_probs=25.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELRD 250 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~ 250 (470)
..+..|.|.|++|+|||++++.|+++ ++...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~-l~~~~ 64 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK-MGINP 64 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH-HTCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH-hCCCE
Confidence 34567888999999999999999997 76553
No 193
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.10 E-value=0.026 Score=54.03 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+ -+++|-|+.|||||||++.|+..
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 35 78999999999999999999963
No 194
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.04 E-value=0.031 Score=48.51 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 221 RITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..|.|.|+.|+||||+++.+++.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999987
No 195
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.04 E-value=0.03 Score=51.35 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
-++|+|.|..||||||++..|... |..+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~-l~~~ 31 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA-AVRE 31 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH-HHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh-hHhc
Confidence 358999999999999999999986 5433
No 196
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.02 E-value=0.035 Score=49.60 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
..+.|.|+.|+||||+++.+++. +..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~-~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG-LNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH-HHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-hcC
Confidence 47899999999999999999987 543
No 197
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.01 E-value=0.036 Score=50.69 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=21.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
|+++++++.|+.|+||||++-.++..
T Consensus 1 ~~g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 1 MSGKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp -CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999998555544
No 198
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.01 E-value=0.033 Score=46.94 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..-|+|-|..|+||||+++.|...
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhC
Confidence 4457999999999999999999864
No 199
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.99 E-value=0.034 Score=47.09 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
|+..-|+|-|..|+|||||++.|...
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcC
Confidence 45578999999999999999999864
No 200
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.98 E-value=0.032 Score=48.61 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
|+...|+|-|..|+|||||++.|..
T Consensus 1 m~~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 1 MKSYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhC
Confidence 3456899999999999999999985
No 201
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.97 E-value=0.033 Score=56.00 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++.+|+|-|+.||||||+++.|+..
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999999976
No 202
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.94 E-value=0.025 Score=50.02 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++..++|-|+.|+||||+++.|+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 6778999999999999999999986
No 203
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.92 E-value=0.034 Score=51.10 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++.+++|.|+.||||||++..|+..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 46789999999999999999999974
No 204
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.92 E-value=0.027 Score=55.60 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+|-+++|-|+.|||||||++.|+..
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 357889999999999999999999863
No 205
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.83 E-value=0.025 Score=51.50 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 012135 222 ITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+|+|.|..||||||+++.|...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999986
No 206
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.76 E-value=0.032 Score=49.18 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=23.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+.++.+-|+|-|..|||||||++.|...
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcC
Confidence 5677889999999999999999999864
No 207
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.66 E-value=0.069 Score=49.70 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
+.-|.|.|+.|+||||+++.|+++ ++..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~-~~~~ 66 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE-AQVP 66 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH-HTCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 445789999999999999999997 6643
No 208
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.66 E-value=0.056 Score=51.30 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
+.-|.|.|+.|+||||+++.|++. ++..
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~-~~~~ 78 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE-TNAT 78 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH-TTCE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH-hCCC
Confidence 445889999999999999999987 6543
No 209
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.64 E-value=0.12 Score=54.38 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=26.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELRD 250 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~ 250 (470)
.++.+|+|.|..||||||++..|+.+ +...+
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~kLA~~-l~~~G 128 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVAKLARY-FQKRG 128 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHHHHHHH-HHTTT
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHHH-HHHCC
Confidence 36889999999999999999999986 55443
No 210
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.61 E-value=0.038 Score=53.58 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 224 FCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 224 IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
|.|.|+.|+||||+++.|+.. ++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~-~~~ 70 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE-SGL 70 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH-TTC
T ss_pred EEEECCCCCcHHHHHHHHHHH-cCC
Confidence 899999999999999999986 554
No 211
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.61 E-value=0.039 Score=51.90 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 223 TFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
-|.|.|+.|+||||+++.|+.. ++.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~-~~~ 71 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE-AKV 71 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH-HTC
T ss_pred eEEEECcCCCCHHHHHHHHHHH-cCC
Confidence 4889999999999999999987 554
No 212
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.61 E-value=0.033 Score=56.27 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++.+|+|.|+.||||||+++.|...
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 45678999999999999999999975
No 213
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.56 E-value=0.045 Score=46.55 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
|+..-|+|-|..|+|||||++.|...
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Confidence 34567999999999999999999863
No 214
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.53 E-value=0.05 Score=49.75 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 221 RITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.+|+|.|..||||||+++.|...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 215
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.52 E-value=0.04 Score=56.29 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|+.|||||||+++|+..
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcC
Confidence 357889999999999999999999963
No 216
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.51 E-value=0.041 Score=54.50 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
..+.|.|+.|+||||+++.|+.. ++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~-l~~ 77 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE-LQT 77 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH-HTC
T ss_pred CeEEEECCCCCcHHHHHHHHHHH-hCC
Confidence 46899999999999999999997 654
No 217
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.51 E-value=0.046 Score=46.26 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
|+..-|+|-|..|+|||||++.|...
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 45578999999999999999999864
No 218
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.51 E-value=0.04 Score=51.73 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 224 FCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 224 IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
|.|.|+.|+||||+++.|+.. ++
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~-~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE-AR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH-TT
T ss_pred EEEECCCCCCHHHHHHHHHHH-hC
Confidence 899999999999999999986 54
No 219
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.48 E-value=0.043 Score=52.91 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|.|..|+|||||++.|+..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999875
No 220
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.48 E-value=0.035 Score=53.97 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 221 RITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+-+++|-|+.|||||||++.|+..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999999864
No 221
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.45 E-value=0.041 Score=55.29 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=37.5
Q ss_pred cccccc-chhhhhhhhhhhhhhhhccCCCCCCCCCCCCcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 185 GIIHKN-HAESITTFIKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 185 ~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
.++||+ +.+.|..||..++. ..++..|.|.|++|+|||++++.++++ |.
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~-------------~~~~~~lli~GpPGTGKT~~v~~v~~~-L~ 70 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM-------------SSQNKLFYITNADDSTKFQLVNDVMDE-LI 70 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------------TTCCCEEEEECCCSHHHHHHHHHHHHH-HH
T ss_pred ccCCHHHHHHHHHHHHHHHhc-------------CCCCCeEEEECCCCCCHHHHHHHHHHH-HH
Confidence 345665 34566788888772 145678899999999999999999987 53
No 222
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.41 E-value=0.032 Score=55.58 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||+++|...
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 357889999999999999999999863
No 223
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.39 E-value=0.03 Score=50.33 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=23.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
..++..|+|-|..|||||||++.|..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 35678999999999999999999875
No 224
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.39 E-value=0.067 Score=51.16 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
+.-|.|.|+.|+||||+++.|++. ++.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~-~~~ 80 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE-CSA 80 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH-TTC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH-hCC
Confidence 567899999999999999999987 553
No 225
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.34 E-value=0.053 Score=48.85 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 012135 222 ITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..|.|.|+.|+||||+++.|++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67889999999999999999987
No 226
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.33 E-value=0.045 Score=55.75 Aligned_cols=27 Identities=30% Similarity=0.255 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|+.|||||||++.|+..
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 347889999999999999999999963
No 227
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.33 E-value=0.042 Score=51.19 Aligned_cols=28 Identities=14% Similarity=0.264 Sum_probs=22.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..+.+.|+|-|..|+|||||++.|...
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCC
Confidence 3456788999999999999999999864
No 228
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.31 E-value=0.048 Score=55.62 Aligned_cols=26 Identities=31% Similarity=0.231 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|-|+.|||||||++.|+..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCC
Confidence 57889999999999999999999963
No 229
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=93.31 E-value=0.021 Score=46.87 Aligned_cols=31 Identities=39% Similarity=0.621 Sum_probs=26.2
Q ss_pred CCeeeccCCCcchHHHHHhhccchHHHHHHHH
Q 012135 134 PDLLTIPGVGPRNLRKLVDNGIGDVAELKQLY 165 (470)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (470)
--|..||||||+|.++|. +-|+++.+|+++=
T Consensus 18 s~L~~IpGIG~kr~~~LL-~~FgSl~~i~~AS 48 (84)
T 1z00_B 18 DFLLKMPGVNAKNCRSLM-HHVKNIAELAALS 48 (84)
T ss_dssp HHHHTCSSCCHHHHHHHH-HHSSCHHHHHHSC
T ss_pred HHHHhCCCCCHHHHHHHH-HHcCCHHHHHHCC
Confidence 347799999999999999 4699999988653
No 230
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.26 E-value=0.049 Score=48.20 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 012135 224 FCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 224 IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+.|.|+.|+||||+++.+++.
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999986
No 231
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.25 E-value=0.049 Score=55.59 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|-|+.|||||||++.|+..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcC
Confidence 57889999999999999999999963
No 232
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.23 E-value=0.051 Score=56.57 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
.++|+|.|+.||||||++..|++. ++.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~-~~~ 28 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQK-FNG 28 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHH-HTE
T ss_pred CcEEEEECcchhhHHHHHHHHHHH-CCC
Confidence 358999999999999999999997 653
No 233
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.21 E-value=0.048 Score=55.88 Aligned_cols=26 Identities=35% Similarity=0.303 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|-|+.|||||||++.|+..
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcC
Confidence 57889999999999999999999963
No 234
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.19 E-value=0.083 Score=54.82 Aligned_cols=40 Identities=28% Similarity=0.277 Sum_probs=29.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC-CceEeccCCc
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLELR-DLVEIVPEPI 259 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~-~~~Evv~EPv 259 (470)
.++-+|+|.|+.||||||+++.|... +... +.+....+|+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~-l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE-LNSSERNILTVEDPI 205 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH-HCCTTSCEEEEESSC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh-cCCCCCEEEEecccc
Confidence 34568999999999999999999986 5432 3333444554
No 235
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.18 E-value=0.058 Score=46.48 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=23.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+..-|+|-|..|+|||||++.|...
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 345678999999999999999999864
No 236
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.16 E-value=0.049 Score=55.70 Aligned_cols=26 Identities=35% Similarity=0.284 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|-|+.|||||||++.|+..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcC
Confidence 46789999999999999999999963
No 237
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.15 E-value=0.051 Score=55.94 Aligned_cols=27 Identities=26% Similarity=0.243 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|+.|||||||++.|+..
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcC
Confidence 357889999999999999999999963
No 238
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.15 E-value=0.042 Score=55.75 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|-|+.|||||||++.|+..
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcC
Confidence 56789999999999999999999963
No 239
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.13 E-value=0.06 Score=52.41 Aligned_cols=28 Identities=29% Similarity=0.252 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
.+..|.|.|+.|+||||+++.|++. ++.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~-~~~ 75 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE-CQA 75 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH-TTC
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH-hCC
Confidence 3567899999999999999999987 553
No 240
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.11 E-value=0.052 Score=55.19 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++.+|+|.|+.||||||+++.|...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45678999999999999999999986
No 241
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.00 E-value=0.057 Score=48.43 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 221 RITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
...|+|-|..|||||||++.|...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999999864
No 242
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.98 E-value=0.04 Score=55.93 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|-|+.|||||||++.|+..
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 56889999999999999999999963
No 243
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=92.96 E-value=0.02 Score=44.23 Aligned_cols=28 Identities=43% Similarity=0.762 Sum_probs=24.1
Q ss_pred eeeccCCCcchHHHHHhhccchHHHHHHH
Q 012135 136 LLTIPGVGPRNLRKLVDNGIGDVAELKQL 164 (470)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (470)
|..||||||++.++|.+ -|+++.+++++
T Consensus 6 L~~IpGIG~kr~~~LL~-~Fgs~~~i~~A 33 (63)
T 2a1j_A 6 LLKMPGVNAKNCRSLMH-HVKNIAELAAL 33 (63)
T ss_dssp HHTSTTCCHHHHHHHHH-HCSSHHHHHTC
T ss_pred HHcCCCCCHHHHHHHHH-HcCCHHHHHHC
Confidence 56899999999999995 69999888754
No 244
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.91 E-value=0.16 Score=50.26 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhh
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETL 246 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L 246 (470)
+.-|.|.|++|+||||+++.++++ +
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~-~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE-A 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH-T
T ss_pred CceEEEECCCCccHHHHHHHHHHH-c
Confidence 467888999999999999999987 5
No 245
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.87 E-value=0.054 Score=52.66 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 012135 222 ITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..|+|-|..|||||||++.|...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999975
No 246
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.84 E-value=0.076 Score=50.90 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
..+.-|.|.|+.|+||||+++.|++. +.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~-l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL-LH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH-HH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH-HH
Confidence 34567899999999999999999987 53
No 247
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.80 E-value=0.066 Score=53.65 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++.+|+|-|..|||||||++.|...
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 357889999999999999999999875
No 248
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.77 E-value=0.063 Score=55.01 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
..++-+++|-|+.|||||||++.|+.
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhc
Confidence 45788999999999999999999986
No 249
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.76 E-value=0.065 Score=47.21 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++..|+|-|..|+|||||++.|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999863
No 250
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.76 E-value=0.08 Score=45.69 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+...|+|-|..|||||||++.|...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45778999999999999999999863
No 251
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.75 E-value=0.061 Score=55.45 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|+.||||||++++|+..
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 457889999999999999999999963
No 252
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.73 E-value=0.066 Score=54.34 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++-+|+|.|+.||||||+++.|...
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3449999999999999999999875
No 253
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.71 E-value=0.07 Score=55.90 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLELRD 250 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~ 250 (470)
+.=|.+.|++|+|||++++.||.+ ++...
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e-~~~~~ 243 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT-IGANF 243 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH-HTCEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH-hCCCE
Confidence 345778899999999999999998 77654
No 254
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.69 E-value=0.061 Score=51.42 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 224 FCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 224 IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
|.|.|+.|+||||+++.|+.. +.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~-~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE-AR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH-TT
T ss_pred EEEECCCcChHHHHHHHHHHH-cC
Confidence 899999999999999999986 44
No 255
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.64 E-value=0.068 Score=51.21 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|.|..|||||||+..|+..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 37889999999999999999999864
No 256
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.61 E-value=0.07 Score=47.83 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 012135 222 ITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..|+|-|..|||||||++.|...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 57899999999999999999863
No 257
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.59 E-value=0.061 Score=55.85 Aligned_cols=25 Identities=20% Similarity=0.500 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
.++.+|+|-|..|||||||++.|..
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhC
Confidence 3567999999999999999999986
No 258
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.58 E-value=0.074 Score=55.53 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELRD 250 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~~ 250 (470)
+=|.+.|++|+|||++++.+|.+ ++...
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~-~~~~~ 234 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS-TKAAF 234 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH-HTCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHH-hCCCe
Confidence 34789999999999999999997 77653
No 259
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.57 E-value=0.085 Score=50.48 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 221 RITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
...|.|.|+.|+||||+++.|++.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 347899999999999999999987
No 260
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.57 E-value=0.1 Score=46.03 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+...|+|-|..||||||+++.|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999864
No 261
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.53 E-value=0.057 Score=51.34 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++.|+|.|+.|+||||++..|+++
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 5788999999999999999999986
No 262
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.53 E-value=0.081 Score=48.03 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+...|+|.|..||||||++..|...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999876
No 263
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.49 E-value=0.059 Score=56.62 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++.+++|-|+.|||||||+++|+..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 6789999999999999999999974
No 264
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.46 E-value=0.084 Score=45.57 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++..-|+|-|..|+|||||++.|...
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhC
Confidence 45678999999999999999999864
No 265
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.45 E-value=0.075 Score=50.52 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
+.-|.|.|++|+||||+++.|++. ++..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~-l~~~ 77 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL-ANAP 77 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH-HTCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 345778999999999999999997 6543
No 266
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.43 E-value=0.09 Score=44.94 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+...|+|-|..|+|||||++.|...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999753
No 267
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.42 E-value=0.047 Score=54.61 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++.+|+|.|+.||||||+++.|...
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999975
No 268
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.41 E-value=0.069 Score=45.39 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 221 RITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..-|+|-|..|+|||||++.|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999864
No 269
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.39 E-value=0.1 Score=45.51 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..-|+|-|..|+|||||++.|...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4678999999999999999999864
No 270
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.37 E-value=0.076 Score=45.99 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 012135 222 ITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.-|.|.|..|+|||++++.|++.
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 34789999999999999999985
No 271
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.36 E-value=0.08 Score=45.00 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..-|+|-|..|||||||++.|...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3467899999999999999999864
No 272
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.35 E-value=0.083 Score=47.25 Aligned_cols=27 Identities=30% Similarity=0.639 Sum_probs=22.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+..-|+|-|..|+|||||++.|...
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 345788999999999999999999864
No 273
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.34 E-value=0.096 Score=46.13 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+...|+|-|..|+|||||++.|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999753
No 274
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.34 E-value=0.08 Score=50.57 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
|+.+.|+|-|+.|||||||++.|...
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCC
Confidence 45578999999999999999999853
No 275
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.33 E-value=0.091 Score=46.79 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++..-|+|-|..|||||||++.|...
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 5677889999999999999999888753
No 276
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.30 E-value=0.085 Score=44.61 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 012135 222 ITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+.|+|-|..|+||||+++.|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999864
No 277
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.25 E-value=0.085 Score=48.41 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-++.|.|..|+||||++..++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999998777654
No 278
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.25 E-value=0.087 Score=53.96 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
+.+.|+|.|+.|+||||+++.|++. ++.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~-l~~ 50 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQI-INE 50 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH-HHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHH-hCC
Confidence 3456999999999999999999986 553
No 279
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.19 E-value=0.083 Score=45.82 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++..-|+|-|..|+|||||++.|...
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcC
Confidence 55678999999999999999999863
No 280
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.18 E-value=0.09 Score=52.85 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+.+|+|.|.+|||||||++.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34789999999999999999999875
No 281
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.18 E-value=0.085 Score=45.66 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=22.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++..-|+|-|..|+|||||++.|...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhC
Confidence 356678999999999999999999864
No 282
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.18 E-value=0.085 Score=45.26 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..-|+|-|..|+|||||++.|...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcC
Confidence 4567999999999999999999753
No 283
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.17 E-value=0.099 Score=45.67 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.....|+|-|..|+|||||++.|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 45678999999999999999999764
No 284
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.15 E-value=0.083 Score=46.77 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 012135 223 TFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+.+|.|..||||||+++.|.-.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 8899999999999999999853
No 285
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.15 E-value=0.083 Score=44.98 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 221 RITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..-|+|-|..|+|||||++.|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999853
No 286
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.12 E-value=0.094 Score=51.52 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+..|.|.|+.|+||||+++.+++.
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999986
No 287
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.09 E-value=0.093 Score=51.56 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
+..+.|.|+.|+||||+++.+++. ++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~-l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQA-LGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH-HCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH-hcc
Confidence 568899999999999999999997 664
No 288
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.05 E-value=0.088 Score=51.78 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+.+++|-|..|||||||++.|. .
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-S
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-H
Confidence 46799999999999999999998 6
No 289
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.04 E-value=0.084 Score=46.70 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 012135 222 ITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk 243 (470)
..|+|-|..|||||||++.|..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5689999999999999999975
No 290
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.95 E-value=0.068 Score=52.85 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 221 RITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-.+++|.|..||||||+++.|...
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 358899999999999999999974
No 291
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.95 E-value=0.094 Score=45.18 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..-|+|-|..|||||||++.|...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999998864
No 292
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.95 E-value=0.1 Score=46.24 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=23.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+.++..-|+|-|..|||||||++.|...
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456678999999999999999999864
No 293
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.92 E-value=0.11 Score=47.28 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+...|+|-|..||||||++..|...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467889999999999999999876
No 294
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.91 E-value=0.097 Score=54.76 Aligned_cols=29 Identities=17% Similarity=0.044 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLELRD 250 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~ 250 (470)
++=|.+.|++|+|||++++.+|.+ ++...
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e-~~~~f 243 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ-TNATF 243 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH-HTCEE
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH-hCCCE
Confidence 455788999999999999999998 67653
No 295
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.89 E-value=0.1 Score=49.53 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
.+.-|.|.|+.|+||||+++.|++. ++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~-~~~~ 91 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE-SNFP 91 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH-HTCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH-hCCC
Confidence 4567889999999999999999997 5543
No 296
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.86 E-value=0.084 Score=45.52 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..-|+|-|..|+|||||++.|...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 4567999999999999999999863
No 297
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.84 E-value=0.086 Score=45.29 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++..-|+|-|..|+|||||++.|...
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcC
Confidence 45578999999999999999999853
No 298
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.84 E-value=0.1 Score=54.27 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q 012135 223 TFCVEGNISVGKTTFLQRIANETLELRD 250 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~~L~~~~ 250 (470)
=|-+.|++|+|||++++.||.+ ++...
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e-~~~~f 210 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHH-TDCKF 210 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHH-HTCEE
T ss_pred ceEEeCCCCCCHHHHHHHHHHh-hCCCc
Confidence 3678999999999999999998 67653
No 299
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.81 E-value=0.089 Score=56.27 Aligned_cols=29 Identities=45% Similarity=0.634 Sum_probs=25.7
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 216 PAPKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 216 ~~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+...++-+++|-|+.|||||||++.|+..
T Consensus 20 ~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 20 PTPKNNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp CCCCTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 35568899999999999999999999863
No 300
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.77 E-value=0.077 Score=46.15 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+...|+|-|..|+|||||++.|...
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcC
Confidence 34578999999999999999999853
No 301
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.76 E-value=0.11 Score=44.32 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 012135 222 ITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk 243 (470)
+-|+|-|..|+|||||++.|..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 5689999999999999998864
No 302
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.76 E-value=0.1 Score=51.84 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
.+.-|.|.|++|+||||+++.|++. ++..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~-~~~~ 78 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL-LDVP 78 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH-TTCC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH-cCCC
Confidence 3456888999999999999999997 6543
No 303
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.74 E-value=0.11 Score=55.18 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++..|+|.|+.||||||+++.|...
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4567999999999999999999875
No 304
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.73 E-value=0.1 Score=50.82 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+..|.|.|+.|+||||+++.+++.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999986
No 305
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.70 E-value=0.12 Score=46.57 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+...|+|-|..|+|||||+..|...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999874
No 306
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.68 E-value=0.1 Score=46.75 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=22.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..+..-|+|-|..|+|||||++.|...
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3456788999999999999999999864
No 307
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.68 E-value=0.12 Score=44.93 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+..-|+|-|..|+|||||++.|...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 456778999999999999999999864
No 308
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=91.64 E-value=0.061 Score=50.68 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 224 FCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 224 IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
|.|.|+.|+||||+++.|+++ ++..
T Consensus 47 vll~G~~GtGKT~la~~la~~-~~~~ 71 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE-AHVP 71 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH-HTCC
T ss_pred EEEECCCCCcHHHHHHHHHHH-hCCC
Confidence 668999999999999999997 5543
No 309
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.63 E-value=0.1 Score=47.56 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+..-|+|-|..|+|||||++.|...
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcC
Confidence 45678999999999999999999753
No 310
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.63 E-value=0.095 Score=51.04 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+..+.|.|+.|+||||+++.+++.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456889999999999999999987
No 311
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.58 E-value=0.22 Score=48.73 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
+.-|.|.|++|+|||++++.++++ ++..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~-~~~~ 78 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE-ANST 78 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH-HTCE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH-HCCC
Confidence 456899999999999999999997 6543
No 312
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.54 E-value=0.13 Score=45.37 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
.+...|+|-|..|||||||++.|..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999985
No 313
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.53 E-value=0.14 Score=45.16 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+..-|+|-|..|||||||++.|...
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcC
Confidence 34578999999999999999999863
No 314
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.51 E-value=0.098 Score=45.48 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+.+-|+|-|..|||||||++.|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 3567999999999999999999864
No 315
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.48 E-value=0.084 Score=45.90 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=22.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
.+...|+|-|..|||||||++.|..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4568899999999999999998864
No 316
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.48 E-value=0.22 Score=53.07 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
.++.+|+|.|..||||||++..|+.. +.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~-l~ 126 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYY-YQ 126 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHH-HH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH-HH
Confidence 56789999999999999999999975 54
No 317
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.48 E-value=0.11 Score=45.80 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=22.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+.++..-|+|-|..|+|||||++.|...
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcC
Confidence 4456788999999999999999999753
No 318
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=91.45 E-value=0.11 Score=50.12 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
|+.+.|+|-|..|||||||++.|...
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCC
Confidence 46788999999999999999999864
No 319
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.44 E-value=0.26 Score=51.34 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=34.0
Q ss_pred hhhhhhhhhhhhhccCCCCCCCCCCCCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 195 ITTFIKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 195 ~~~~i~~~~~~~~~~~~~~~~~~~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
|...+.+...+.+............++.+|+|.|..|+||||++-.|+.. +...
T Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~-l~~~ 127 (433)
T 2xxa_A 74 FVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF-LREK 127 (433)
T ss_dssp THHHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH-HHHT
T ss_pred HHHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH-HHHh
Confidence 33444444444443322211123346789999999999999999999976 5443
No 320
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.41 E-value=0.08 Score=44.97 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..-|+|-|..|+|||||++.|...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 4567999999999999999999863
No 321
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.37 E-value=0.1 Score=46.42 Aligned_cols=26 Identities=23% Similarity=0.627 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+..-|+|-|..|+|||||++.|...
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcC
Confidence 45678999999999999999999864
No 322
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.35 E-value=0.11 Score=52.96 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++.+++|-|+.|||||||++.|...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCCEEEEECCCCccHHHHHHHHhcc
Confidence 4678999999999999999999864
No 323
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.34 E-value=0.11 Score=44.92 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++..-|+|-|..|+|||||++.|...
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 45678999999999999999999864
No 324
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.34 E-value=0.13 Score=51.43 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+..+|+|.|..|+||||++..|+..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999876
No 325
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.34 E-value=0.1 Score=45.74 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=22.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..+...|+|-|..|+|||||++.|...
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcC
Confidence 4557789999999999999999999864
No 326
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.33 E-value=0.22 Score=46.15 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++++++++.|++||||||.+-.++.+
T Consensus 5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r 31 (191)
T 1xx6_A 5 KDHGWVEVIVGPMYSGKSEELIRRIRR 31 (191)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 356889999999999999999888776
No 327
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.32 E-value=0.12 Score=51.62 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
...|.|.|++|+||||+++.|++. ++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~-l~~~ 99 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH-LDIP 99 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH-TTCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 345889999999999999999997 6543
No 328
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.29 E-value=0.11 Score=45.01 Aligned_cols=26 Identities=15% Similarity=0.454 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+..-|+|-|..|+|||||++.|...
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 45578999999999999999999864
No 329
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.27 E-value=0.11 Score=50.40 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 012135 224 FCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 224 IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+.|.|+.|+||||+++.|++.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999986
No 330
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.26 E-value=0.12 Score=44.08 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..-|+|-|..|+|||||++.|...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999999864
No 331
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.22 E-value=0.11 Score=55.60 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+|.+++|-|+.||||||+++.|...
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999999864
No 332
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.21 E-value=0.15 Score=44.13 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++..-|+|-|..|+|||||++.|...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999999864
No 333
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.19 E-value=0.12 Score=43.90 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 012135 222 ITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.-|+|-|..|+|||||++.|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56899999999999999999853
No 334
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.17 E-value=0.17 Score=50.61 Aligned_cols=28 Identities=21% Similarity=0.097 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
.+.-|.|.|+.|+||||+++.|++. ++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~-~~~ 143 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ-SGA 143 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH-TTC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH-cCC
Confidence 3557889999999999999999987 554
No 335
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.16 E-value=0.11 Score=45.74 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=22.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..+...|+|-|..|+|||||++.|...
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 5567789999999999999999998753
No 336
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=91.15 E-value=0.1 Score=55.87 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+|.+++|-|+.||||||+++.|...
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 346889999999999999999999863
No 337
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.15 E-value=0.17 Score=47.26 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=25.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
.++..++++.|-.||||||++..|+.. +.
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~-l~ 39 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRY-LE 39 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHH-HT
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHH-HH
Confidence 467789999999999999999999976 55
No 338
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.15 E-value=0.12 Score=50.87 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 012135 224 FCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 224 IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+.|.|+.|+||||+++.|++.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999987
No 339
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.15 E-value=0.14 Score=45.48 Aligned_cols=26 Identities=19% Similarity=0.454 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+..-|+|-|..|+|||||++.|...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 45678999999999999999999864
No 340
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.15 E-value=0.13 Score=43.85 Aligned_cols=25 Identities=24% Similarity=0.692 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..-|+|-|..|+|||||++.|...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999999864
No 341
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.14 E-value=0.13 Score=54.83 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+++|-|..|||||||++.|+..
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999999963
No 342
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=91.13 E-value=0.13 Score=54.72 Aligned_cols=27 Identities=37% Similarity=0.589 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
++..+.|.|+.|+||||+++.|+.. ++
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~-l~ 133 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS-LG 133 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH-HT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh-cC
Confidence 5779999999999999999999986 54
No 343
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.04 E-value=0.13 Score=44.92 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+...|+|-|..|+|||||++.|...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999753
No 344
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.04 E-value=0.13 Score=44.57 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..-|+|-|..|+|||||++.|...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999863
No 345
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.03 E-value=0.14 Score=45.71 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+...|+|-|..|+||||+++.|...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999864
No 346
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.95 E-value=0.13 Score=43.99 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 012135 222 ITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk 243 (470)
.-|+|-|..|+|||||++.|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999964
No 347
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=90.33 E-value=0.043 Score=49.26 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+..-|+|-|..|+|||||++.|...
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 46678999999999999999888753
No 348
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.94 E-value=0.12 Score=50.48 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 012135 224 FCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 224 IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+.|.|+.|+||||+++.|++.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999985
No 349
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=90.92 E-value=0.15 Score=48.51 Aligned_cols=27 Identities=26% Similarity=0.183 Sum_probs=22.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++.++++.|++|+||||++-.++..
T Consensus 9 ~~~G~i~litG~mGsGKTT~ll~~~~r 35 (223)
T 2b8t_A 9 KKIGWIEFITGPMFAGKTAELIRRLHR 35 (223)
T ss_dssp --CCEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCcEEEEEECCCCCcHHHHHHHHHHH
Confidence 356899999999999999988877766
No 350
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.89 E-value=0.13 Score=50.41 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+.+++|-|..|||||||++.|...
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred cCCeEEEECCCCCcHHHHHHHhccc
Confidence 4679999999999999999999863
No 351
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.84 E-value=0.15 Score=45.56 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
++..-|+|-|..|+|||||++.|..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 5668899999999999999999864
No 352
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.83 E-value=0.15 Score=49.89 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
..+.|.|+.|+||||+++.+++. +.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~-~~ 69 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWEL-YK 69 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH-HT
T ss_pred CeEEEECCCCCCHHHHHHHHHHH-Hh
Confidence 37899999999999999999987 54
No 353
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.81 E-value=0.15 Score=44.96 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
.+...|+|-|..|+|||||++.|..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 3467899999999999999999975
No 354
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.79 E-value=0.17 Score=49.22 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
..|.|.|+.|+||||+++.+++. ++..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~-~~~~ 82 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE-MSAN 82 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH-TTCC
T ss_pred CeEEEECcCCCCHHHHHHHHHHH-hCCC
Confidence 34789999999999999999987 5543
No 355
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=90.79 E-value=0.12 Score=46.69 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+...|+|-|..|+|||||++.|...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999754
No 356
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.79 E-value=0.13 Score=54.45 Aligned_cols=29 Identities=21% Similarity=0.153 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLELRD 250 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~ 250 (470)
++=|.+.|++|+|||++++.||.+ ++...
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e-~~~~f 271 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANR-TDATF 271 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHH-HTCEE
T ss_pred CCceEeeCCCCCcHHHHHHHHHhc-cCCCe
Confidence 455789999999999999999998 77653
No 357
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=90.79 E-value=0.13 Score=44.33 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 220 KRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
+..-|+|-|..|+|||||++.|..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999875
No 358
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.76 E-value=0.14 Score=43.87 Aligned_cols=25 Identities=20% Similarity=0.525 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..-|+|-|..|+|||||++.|...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 4567999999999999999999864
No 359
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.72 E-value=0.15 Score=44.93 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..-|+|-|..|+|||||++.|...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999864
No 360
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.68 E-value=0.15 Score=48.76 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
..|.|-|++|+||||++..|++. +.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~-l~ 83 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHF-IQ 83 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHH-HT
T ss_pred cEEEEECCCCCCHHHHHHHHHHH-hC
Confidence 45899999999999999999987 54
No 361
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.67 E-value=0.14 Score=45.35 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++.+-|+|-|..|+|||||++.|...
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcC
Confidence 45678999999999999999999864
No 362
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=90.67 E-value=0.14 Score=48.12 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=22.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..+...|+|-|.+||||||+++.|...
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCC
Confidence 3456688999999999999999999753
No 363
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.66 E-value=0.15 Score=53.46 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLELRD 250 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~ 250 (470)
+.=|-+.|++|+|||++++.||.+ ++...
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e-~~~~f 244 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ-TSATF 244 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH-HTCEE
T ss_pred CCCCceECCCCchHHHHHHHHHHH-hCCCE
Confidence 455888999999999999999998 67653
No 364
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.66 E-value=0.14 Score=54.72 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|-|+.|||||||++.|+..
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999999963
No 365
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.62 E-value=0.16 Score=55.30 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+|-+++|-|+.|||||||++.|+..
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcC
Confidence 467899999999999999999999964
No 366
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.58 E-value=0.15 Score=45.27 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+...|+|-|..|+|||||++.|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 34578999999999999999999864
No 367
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.57 E-value=0.15 Score=44.89 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+..-|+|-|..|+|||||++.|...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 34578999999999999999999864
No 368
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.56 E-value=0.15 Score=45.22 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=22.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+..-|+|-|..|+|||||++.|...
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhC
Confidence 356678999999999999999998864
No 369
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.55 E-value=0.18 Score=48.15 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 012135 223 TFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+.|.|+.|+||||+++.+++.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4899999999999999999987
No 370
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=90.52 E-value=0.14 Score=49.95 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+..+.|.|+.|+||||+++.+++.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3557889999999999999999986
No 371
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.52 E-value=0.17 Score=49.50 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
+..+.|.|+.|+||||+++.+++. +..
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~-l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKG-LNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHH-HSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-hCC
Confidence 347889999999999999999987 543
No 372
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.48 E-value=0.13 Score=53.73 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=22.4
Q ss_pred CCCcE--EEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRIT--FCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~--IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+|-+ |+|-|..|||||||++.|...
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 56777 999999999999999999863
No 373
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.46 E-value=0.17 Score=45.55 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=21.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+...|+|-|..|+|||||++.|...
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999864
No 374
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.43 E-value=0.16 Score=44.28 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 012135 223 TFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-|+|-|..|+|||||++.|...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999863
No 375
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.43 E-value=0.15 Score=45.87 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=21.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
.+...|+|-|..|||||||++.|..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999999974
No 376
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.43 E-value=0.13 Score=47.62 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 012135 223 TFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+|.|.|+.||||||++..|++.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 3789999999999999999863
No 377
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.42 E-value=0.18 Score=42.81 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 012135 223 TFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-|+|-|..|+|||||++.|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999764
No 378
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.40 E-value=0.14 Score=44.16 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+..-|+|-|..|+|||||++.|...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 34578999999999999999999864
No 379
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=90.39 E-value=0.087 Score=52.57 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++.+++|-|..|||||||++.|...
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHhccc
Confidence 5779999999999999999999753
No 380
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.36 E-value=0.17 Score=50.48 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++.+|+|.|..|+||||+++.|+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999875
No 381
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=90.36 E-value=0.13 Score=50.09 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 223 TFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
-+.|.|++|+||||+++.|++. ++..
T Consensus 48 ~vll~G~pGtGKT~la~~la~~-~~~~ 73 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKT-MDLD 73 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHH-TTCC
T ss_pred eEEEECCCCCcHHHHHHHHHHH-hCCC
Confidence 5789999999999999999986 6543
No 382
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.32 E-value=0.17 Score=45.57 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=22.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++..-|+|-|..|+|||||++.|...
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3467789999999999999999999864
No 383
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=90.26 E-value=0.19 Score=46.86 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=20.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 220 KRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
..|++.|+|++||||||++..+..
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHH
Confidence 457999999999999999877643
No 384
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.26 E-value=0.35 Score=50.84 Aligned_cols=28 Identities=29% Similarity=0.229 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
....+.|.|+.|+||||+++.|+++ ++.
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~-l~~ 103 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQE-LGY 103 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH-TTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-cCC
Confidence 3468899999999999999999997 654
No 385
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.25 E-value=0.15 Score=55.28 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++-+++|-|+.|||||||++.|+..
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5779999999999999999999963
No 386
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=90.24 E-value=0.21 Score=51.73 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
+.-|.|.|++|+||||+++.|+++ ++
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~-l~ 88 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQE-LG 88 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH-HC
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH-hC
Confidence 345889999999999999999997 76
No 387
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.21 E-value=0.13 Score=54.89 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++-+++|-|+.|||||||++.|+..
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36779999999999999999999863
No 388
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.20 E-value=0.19 Score=56.47 Aligned_cols=29 Identities=24% Similarity=0.177 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
.++=|.+.|++|+||||+++.|+++ ++..
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~e-lg~~ 265 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANE-TGAF 265 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTT-TTCE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH-hCCe
Confidence 4567899999999999999999997 6654
No 389
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.18 E-value=0.17 Score=44.05 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..-|+|-|..|||||||++.|...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3567999999999999999999864
No 390
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.18 E-value=0.14 Score=45.23 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=21.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+...|+|-|..|+|||||++.|...
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 446788999999999999999999764
No 391
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.15 E-value=0.18 Score=50.99 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+|-+++|-|+.||||||+++.|+..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 67889999999999999999999985
No 392
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.12 E-value=0.17 Score=50.65 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
.-|.|.|+.|+||||+++.|+++ ++..
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~-~~~~ 111 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE-ANST 111 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH-HTCE
T ss_pred ceEEEECCCCCcHHHHHHHHHHH-hCCC
Confidence 34678899999999999999997 6543
No 393
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.11 E-value=0.18 Score=52.96 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
+.-|.+.|++|+||||+++.|++. ++..
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~-l~~~ 77 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKL-ANAP 77 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH-TTCC
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH-cCCC
Confidence 345889999999999999999997 6654
No 394
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.10 E-value=0.18 Score=44.24 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+.+-|+|-|..|+|||||++.|...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567999999999999999999864
No 395
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.08 E-value=0.16 Score=44.99 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=23.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+..-|+|-|..|+|||||++.|...
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 345688999999999999999999864
No 396
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.03 E-value=0.42 Score=45.51 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+++++++.|++||||||.+-.++..
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r 51 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRR 51 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 457899999999999999999887776
No 397
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.99 E-value=0.18 Score=43.99 Aligned_cols=25 Identities=28% Similarity=0.190 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..-|+|-|..|+|||||++.|...
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHT
T ss_pred cccEEEEECCCCCCHHHHHHHHHhh
Confidence 4578999999999999999988764
No 398
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=89.98 E-value=0.16 Score=47.77 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 012135 222 ITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.-|.|.|..|+|||++++.|++.
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 45789999999999999999986
No 399
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.97 E-value=0.15 Score=45.84 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++..-|+|-|..|+|||||++.|...
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 45678999999999999999999864
No 400
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=89.94 E-value=0.15 Score=42.56 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=29.2
Q ss_pred CCeeeccCCCcchHHHHHhhccchHHHHHHHHH
Q 012135 134 PDLLTIPGVGPRNLRKLVDNGIGDVAELKQLYK 166 (470)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (470)
.+|-.||+|||.-.+.|.+-||.++++|++.=-
T Consensus 4 ~~L~~LPNiG~~~e~~L~~vGI~s~e~L~~~Ga 36 (93)
T 3bqs_A 4 ANLSELPNIGKVLEQDLIKAGIKTPVELKDVGS 36 (93)
T ss_dssp SCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHHH
T ss_pred HHhhcCCCCCHHHHHHHHHcCCCCHHHHHhCCH
Confidence 367889999999999999999999999996533
No 401
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.89 E-value=0.21 Score=44.13 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+..-|+|-|..|+|||||++.|...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 34567999999999999999999864
No 402
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=89.87 E-value=0.11 Score=55.83 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+|.+++|-|+.||||||+++.|...
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999999863
No 403
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.86 E-value=0.14 Score=46.06 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
.+...|+|-|..|||||||++.|..
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHh
Confidence 3567899999999999999999863
No 404
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.85 E-value=0.2 Score=52.24 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=24.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+|-+++|-|+.|||||||++.|+..
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 467899999999999999999999985
No 405
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.71 E-value=0.19 Score=49.33 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++.+|+|.|..|+||||++..|+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 7889999999999999999999975
No 406
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.71 E-value=0.28 Score=51.08 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++.+|+|.|..|+||||++..|+..
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999986
No 407
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=89.62 E-value=0.24 Score=46.81 Aligned_cols=28 Identities=18% Similarity=0.301 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
..++|+|.|..||||+|+++.|.+. ++.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~-~g~ 37 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSR-LGA 37 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHH-HCT
T ss_pred CCEEEEEECCCCCChHHHHHHHHHH-cCC
Confidence 4569999999999999999999986 554
No 408
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.53 E-value=0.19 Score=54.63 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+|-+++|-|+.|||||||++.|+..
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCC
Confidence 467889999999999999999999863
No 409
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=89.51 E-value=0.18 Score=42.16 Aligned_cols=31 Identities=29% Similarity=0.506 Sum_probs=28.8
Q ss_pred CCeeeccCCCcchHHHHHhhccchHHHHHHH
Q 012135 134 PDLLTIPGVGPRNLRKLVDNGIGDVAELKQL 164 (470)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (470)
.+|-.+|+|||.-.+.|..-||.++++|+++
T Consensus 4 ~~L~dLPNig~~~e~~L~~~GI~t~~~Lr~~ 34 (93)
T 3mab_A 4 ANLSELPNIGKVLEQDLIKAGIKTPVELKDV 34 (93)
T ss_dssp CCGGGSTTCCHHHHHHHHHTTCCSHHHHHHH
T ss_pred HHHhhCCCCCHHHHHHHHHcCCCCHHHHHhC
Confidence 5788999999999999999999999999964
No 410
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=89.46 E-value=0.16 Score=44.63 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
++..-|+|-|..|+|||||++.|..
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 3567899999999999999998853
No 411
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.45 E-value=0.18 Score=44.10 Aligned_cols=26 Identities=23% Similarity=0.494 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++..-|+|-|..|+|||||++.|...
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC
Confidence 35578999999999999999999864
No 412
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.45 E-value=0.23 Score=45.52 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 220 KRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
++-++.|.|.+|+|||||+-.++.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 678999999999999999987654
No 413
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.39 E-value=0.22 Score=43.97 Aligned_cols=25 Identities=44% Similarity=0.612 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+.+-|+|-|..|+|||||++.|...
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcC
Confidence 4568999999999999999999875
No 414
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=89.38 E-value=0.22 Score=44.16 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=21.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+..-|+|-|..|+|||||++.|...
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 45678999999999999999999753
No 415
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=89.38 E-value=0.21 Score=44.50 Aligned_cols=28 Identities=11% Similarity=0.128 Sum_probs=21.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..+..-|+|-|..|||||||++.|...
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhc
Confidence 4567789999999999999999987653
No 416
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=89.32 E-value=0.24 Score=45.47 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+...|+|-|..|+|||||++.|...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999753
No 417
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.31 E-value=0.24 Score=44.18 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=21.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+..-|+|-|..|+|||||++.|...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 45678999999999999999999853
No 418
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=89.26 E-value=0.24 Score=45.23 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=22.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+.++.+-|+|-|..|+|||||++.|...
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcC
Confidence 4456789999999999999999999864
No 419
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=89.25 E-value=0.076 Score=45.95 Aligned_cols=22 Identities=9% Similarity=0.081 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 012135 223 TFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-|.|.|..|+|||++++.|++.
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 3788999999999999999875
No 420
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=89.22 E-value=0.45 Score=44.21 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=18.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHH
Q 012135 221 RITFCVEGNISVGKTTFLQRIA 242 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLA 242 (470)
+..+++.|..||||||+...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 4678999999999999876554
No 421
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=89.22 E-value=0.13 Score=55.04 Aligned_cols=27 Identities=26% Similarity=0.211 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+|-+++|-|+.||||||+++.|...
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 346889999999999999999999853
No 422
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.21 E-value=0.21 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=21.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRI 241 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlL 241 (470)
.++-+++|.|..|||||||++.+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHH
Confidence 47889999999999999999993
No 423
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=89.17 E-value=0.2 Score=44.58 Aligned_cols=26 Identities=23% Similarity=0.546 Sum_probs=21.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+..-|+|-|..|+|||||++.|...
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999753
No 424
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=89.14 E-value=0.13 Score=49.93 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 224 FCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 224 IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
|.|.|+.|+||||+++.|++. +.
T Consensus 48 vLl~G~~GtGKT~la~~la~~-~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAAL-LP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHH-SC
T ss_pred EEEECCCCccHHHHHHHHHHh-Cc
Confidence 889999999999999999986 54
No 425
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.12 E-value=0.21 Score=54.27 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 221 RITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+-+++|-|+.|||||||++.|+..
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Confidence 357999999999999999999863
No 426
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=89.10 E-value=0.26 Score=44.16 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++..-|+|-|..|+|||||++.|...
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999999864
No 427
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.08 E-value=0.16 Score=54.71 Aligned_cols=28 Identities=21% Similarity=0.192 Sum_probs=24.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
...+|-+++|-|+.||||||+++.|...
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3456889999999999999999999863
No 428
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.08 E-value=0.23 Score=43.72 Aligned_cols=25 Identities=44% Similarity=0.595 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
...-|+|-|..|+|||||++.|...
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999999864
No 429
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.05 E-value=0.22 Score=47.29 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 012135 224 FCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 224 IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+.|.|+.|+||||+++.+++.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHH
Confidence 899999999999999999987
No 430
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=89.05 E-value=0.15 Score=49.11 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
..|.|.|..|+||||+++.+++. ++.
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~-~~~ 64 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHE-LGV 64 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHH-HTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHH-hCC
Confidence 45788999999999999999987 654
No 431
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=89.02 E-value=0.2 Score=53.08 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 012135 222 ITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
-+++|-|+.|||||||++.|+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 78999999999999999999974
No 432
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=88.92 E-value=0.22 Score=44.55 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+-|+|-|..|+|||||++.|...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567999999999999999999864
No 433
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=88.90 E-value=0.24 Score=45.05 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..-|+|-|..|+|||||++.|...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999864
No 434
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=88.89 E-value=0.25 Score=47.46 Aligned_cols=26 Identities=31% Similarity=0.276 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
.+++|.|..|+||||+++.+.+. ++.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~-~~~ 56 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINE-LNL 56 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH-HTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHh-cCC
Confidence 48999999999999999999986 543
No 435
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=88.79 E-value=0.23 Score=44.67 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+..-|+|-|..|+|||||++.|...
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhC
Confidence 34578999999999999999999764
No 436
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=88.77 E-value=0.23 Score=44.10 Aligned_cols=24 Identities=46% Similarity=0.653 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 221 RITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..-|+|-|..|+|||||++.|...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999853
No 437
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.76 E-value=0.17 Score=54.33 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++.+++|-|+.||||||+++.|...
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 346789999999999999999999863
No 438
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=88.67 E-value=0.26 Score=47.25 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 012135 222 ITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++|.|..|+||||+++.+.+.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 58999999999999999999986
No 439
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=88.65 E-value=0.19 Score=49.16 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+..+|+|-|.+|+|||||++.|...
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 45568999999999999999999853
No 440
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=88.65 E-value=0.24 Score=51.62 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
.-+.|.|+.|+||||+++.|++. ++.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~-~~~ 76 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY-ANA 76 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH-TTC
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-hCC
Confidence 46889999999999999999987 543
No 441
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.63 E-value=0.29 Score=54.70 Aligned_cols=29 Identities=28% Similarity=0.247 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
.+..+.|.|++|+||||+++.|+.. ++..
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~-~~~~ 538 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANE-CQAN 538 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHH-HTCC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 4567889999999999999999997 6644
No 442
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.60 E-value=0.27 Score=43.29 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 012135 221 RITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
+-+.+|.|+.||||||+++.|.=
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999974
No 443
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.59 E-value=0.25 Score=47.02 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 012135 224 FCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 224 IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+.|.|+.|+||||+++.+++.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 899999999999999999987
No 444
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=88.58 E-value=0.25 Score=44.06 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 221 RITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..-|+|-|..|+|||||++.|...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999999864
No 445
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=88.57 E-value=0.21 Score=47.82 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++...|+|-|..|+|||||++.|...
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCC
Confidence 34567999999999999999999853
No 446
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=88.57 E-value=0.21 Score=49.07 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=23.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+....-+|+|.|.+|||||||++.|...
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4456679999999999999999999764
No 447
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=88.54 E-value=0.3 Score=50.55 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhh
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETL 246 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L 246 (470)
+.-|.|.|++|+||||+++.|+++ +
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~-~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATE-A 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH-C
T ss_pred CceEEEECCCCCCHHHHHHHHHHH-c
Confidence 356888999999999999999987 5
No 448
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=88.52 E-value=0.18 Score=54.34 Aligned_cols=74 Identities=18% Similarity=0.304 Sum_probs=52.6
Q ss_pred CCCCCeeeccCCCcchHHHHHhhccchHHHHHHHHHHHHH--------HhhHHH---HHhhhcccccccccchhhhhhhh
Q 012135 131 VGNPDLLTIPGVGPRNLRKLVDNGIGDVAELKQLYKDKFW--------EASQKM---IEYLQSSVGIIHKNHAESITTFI 199 (470)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~---~~~l~~~~~~~~~~~~~~~~~~i 199 (470)
...-+|+.||||||+--++|.+.||.++++|+++-...-. |..+++ +++...--+=+.+..|+.|+..|
T Consensus 94 ~~~~~L~~v~GVGpk~A~~i~~~G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~~~l~~~~~~~~r~~~~e~~~~~~~i 173 (578)
T 2w9m_A 94 PGLLDLLGVRGLGPKKIRSLWLAGIDSLERLREAAESGELAGLKGFGAKSAATILENVVFLFEARQRQSLRAGLAVAEEL 173 (578)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHTTCCSHHHHHHHHHHTTTTTSTTCCHHHHHHHHHHHHHHHHHCSSEEHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHcCCCCHHHHHHHHhhCccccCCCCCHHHHHHHHHHHHHHHhhcCCeeHHHHHHHHHHH
Confidence 3456789999999999999999999999999987543211 113333 33333333456788899988887
Q ss_pred hhhhh
Q 012135 200 KDSVD 204 (470)
Q Consensus 200 ~~~~~ 204 (470)
.+...
T Consensus 174 ~~~l~ 178 (578)
T 2w9m_A 174 AGALT 178 (578)
T ss_dssp HHHTG
T ss_pred HHHHH
Confidence 77763
No 449
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=88.45 E-value=0.32 Score=47.12 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
+..+.+.|+.|+||||+++.|++. ++.
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~-l~~ 74 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHD-VNA 74 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHH-TTE
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHH-hCC
Confidence 457888999999999999999987 653
No 450
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=88.44 E-value=0.3 Score=50.36 Aligned_cols=28 Identities=29% Similarity=0.504 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 217 APKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
...++..|+|-|.+|||||||.+.|...
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4456889999999999999999999973
No 451
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.43 E-value=0.33 Score=43.19 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=21.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhc
Q 012135 356 IPDGFIYLRASPDTCHKRMMLRK 378 (470)
Q Consensus 356 kPDLvIyLda~pEv~leRI~kRg 378 (470)
.+|.+|||++|++++++|+.+|.
T Consensus 124 ~~d~~i~l~~~~e~~~~R~~~R~ 146 (203)
T 1uf9_A 124 RLHGTLLVAAPLEERVRRVMARS 146 (203)
T ss_dssp GSSEEEEECCCHHHHHHHHHTTT
T ss_pred hCCEEEEEECCHHHHHHHHHHcC
Confidence 46999999999999999999884
No 452
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=88.43 E-value=0.38 Score=48.71 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCCC
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELRD 250 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~~ 250 (470)
++..+.|.|++|+|||||+..++.. .+...
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~-~G~~V 151 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA-LGGKD 151 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH-HHTTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh-CCCCE
Confidence 4567889999999999999999875 44443
No 453
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=88.31 E-value=0.24 Score=44.39 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..-|+|-|..|+|||||++.|...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4578999999999999999999753
No 454
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=88.31 E-value=0.25 Score=51.09 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 221 RITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..+.|.|+.|+||||+++.+++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 556889999999999999999986
No 455
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=88.25 E-value=0.34 Score=48.74 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 221 RITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
+.-|.|.|+.|+|||++++.|+++ ++..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~-~~~~ 175 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE-SNAT 175 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH-TTCE
T ss_pred CceEEEECCCCCCHHHHHHHHHHh-hcCc
Confidence 467899999999999999999987 5543
No 456
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=88.14 E-value=0.35 Score=51.03 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 224 FCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 224 IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
|.|.|++|+||||+++.|+.+ ++..
T Consensus 52 vLL~GppGtGKT~Laraia~~-~~~~ 76 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGE-ANVP 76 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHH-HTCC
T ss_pred EEEECCCCCCHHHHHHHHHHH-cCCC
Confidence 789999999999999999987 5543
No 457
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=88.13 E-value=0.075 Score=60.81 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=29.1
Q ss_pred ccccchhhhhhhhhhhhhhhhccCCCCCCCCCCCCcEEEEEcCCCCcHHHHH
Q 012135 187 IHKNHAESITTFIKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFL 238 (470)
Q Consensus 187 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~K~~~IvIEG~dGSGKSTLa 238 (470)
+.++|+..| .|+-+...+|+.+|-+ --+.++++|+|..|||||||+
T Consensus 16 ~~~~~~~~I--~i~gar~hNLkni~v~----iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 16 PRGSHMDKI--IVKGARAHNLKNIDVE----IPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp -----CCEE--EEEEECSSSCCSEEEE----EETTSEEEEEESTTSSHHHHH
T ss_pred cCcCCCceE--EEeccccccCCceeee----ccCCcEEEEECCCCCCHHHHH
Confidence 344444333 2555665676665532 236789999999999999998
No 458
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=88.11 E-value=0.97 Score=47.04 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhhcCC
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANETLELR 249 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~~L~~~ 249 (470)
++.+|+|.|..|+||||++..|+.. +...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~-l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY-YKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH-HHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HHHc
Confidence 7789999999999999999999986 5443
No 459
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.10 E-value=0.32 Score=47.85 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 221 RITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+.-|.|.|+.|+|||+++..|+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999987
No 460
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.10 E-value=0.28 Score=44.52 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..-|+|-|..|+|||||++.|...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4568999999999999999998864
No 461
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=88.03 E-value=0.27 Score=47.06 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 012135 223 TFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.|+|-|..|||||||.+.|...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999753
No 462
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=87.98 E-value=0.6 Score=44.33 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.....|+|-|..|+|||||++.|...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 34578999999999999999999864
No 463
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=87.96 E-value=0.29 Score=47.46 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 012135 221 RITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
...|+|-|.+|||||||.+.|..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 45799999999999999999985
No 464
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.91 E-value=0.3 Score=43.05 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..-|+|-|..|+|||||++.|...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999999864
No 465
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=87.87 E-value=0.16 Score=51.20 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=21.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
.++ +++|.|..||||||+++.|.-
T Consensus 59 ~~G-~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 59 GGG-FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp CSS-EEEEEESHHHHHHHHTHHHHH
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHH
Confidence 467 999999999999999999975
No 466
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=87.76 E-value=0.36 Score=46.27 Aligned_cols=27 Identities=19% Similarity=0.449 Sum_probs=20.4
Q ss_pred CCCCCcEEEEEcCCCCcHHH-HHHHHHH
Q 012135 217 APKKRITFCVEGNISVGKTT-FLQRIAN 243 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKST-LaKlLAk 243 (470)
+..++.+.+|.|++|||||| +++.+..
T Consensus 24 ~~~~G~I~vitG~M~sGKTT~Llr~~~r 51 (219)
T 3e2i_A 24 TYHSGWIECITGSMFSGKSEELIRRLRR 51 (219)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999 6666544
No 467
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=87.74 E-value=0.34 Score=48.79 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++.++.|.|..|+|||||+..++..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999988865
No 468
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=87.70 E-value=0.29 Score=44.02 Aligned_cols=25 Identities=40% Similarity=0.537 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+..-|+|-|..|+|||||++.|...
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcC
Confidence 4567999999999999999999853
No 469
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=87.69 E-value=0.31 Score=46.28 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++...|+|-|..|+|||||++.|...
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56788999999999999999999854
No 470
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=87.64 E-value=0.29 Score=56.16 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 220 KRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
+|-+++|-|..|||||||++.|+.
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 567999999999999999999984
No 471
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=87.56 E-value=0.25 Score=48.52 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 012135 221 RITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
.+-|+|-|..|||||||++.|..
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 35679999999999999999874
No 472
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=87.48 E-value=0.45 Score=49.13 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 012135 223 TFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+.|.|+.||||||++..+.+.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8899999999999999999987
No 473
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=87.46 E-value=0.26 Score=38.89 Aligned_cols=32 Identities=31% Similarity=0.576 Sum_probs=25.1
Q ss_pred CCCCeeeccCCCcchHHHHHhhccchHHHHHHH
Q 012135 132 GNPDLLTIPGVGPRNLRKLVDNGIGDVAELKQL 164 (470)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (470)
-.-.|..||||||+..++|++. |+++.+|.++
T Consensus 22 ~~~~L~~I~gIG~~~A~~Ll~~-fgsl~~l~~a 53 (78)
T 1kft_A 22 NTSSLETIEGVGPKRRQMLLKY-MGGLQGLRNA 53 (78)
T ss_dssp -CCGGGGCTTCSSSHHHHHHHH-HSCHHHHHHC
T ss_pred HHHHHhcCCCCCHHHHHHHHHH-cCCHHHHHHC
Confidence 3456889999999999999987 8887766543
No 474
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=87.39 E-value=0.36 Score=49.13 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++.++.|.|+.|+|||||+..++..
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999875
No 475
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=87.34 E-value=0.52 Score=52.68 Aligned_cols=29 Identities=28% Similarity=0.250 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhhcC
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANETLEL 248 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~~L~~ 248 (470)
..+..|.|.|+.|+||||+++.|+.. ++.
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~-l~~ 264 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANE-TGA 264 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHT-TTC
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH-cCC
Confidence 45667999999999999999999986 543
No 476
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=87.31 E-value=0.37 Score=43.12 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 012135 221 RITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
..-|+|-|..|+|||||++.|..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 46799999999999999999985
No 477
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=87.30 E-value=0.3 Score=46.19 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=22.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..+.+.|+|-|..|+|||||++.|...
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCC
Confidence 356789999999999999999998753
No 478
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=87.20 E-value=0.31 Score=48.20 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=20.5
Q ss_pred CcEEEE--EcCCCCcHHHHHHHHHHh
Q 012135 221 RITFCV--EGNISVGKTTFLQRIANE 244 (470)
Q Consensus 221 ~~~IvI--EG~dGSGKSTLaKlLAk~ 244 (470)
+..+.| .|..|+||||+++.+++.
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHH
Confidence 345666 999999999999999986
No 479
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=87.19 E-value=0.2 Score=43.62 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=10.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 221 RITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..-|+|-|..|+|||||++.|...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999998753
No 480
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=87.11 E-value=0.76 Score=45.20 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++.+|+|.|..|+||||++..|+..
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999999976
No 481
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=87.07 E-value=0.35 Score=45.12 Aligned_cols=25 Identities=12% Similarity=0.406 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+.=|.|.|..|+||||++-.|.+.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4667899999999999999999875
No 482
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=86.97 E-value=0.82 Score=48.87 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+...|+|-|..|+|||||++.|...
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~ 88 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQ 88 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999864
No 483
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=86.96 E-value=0.39 Score=46.21 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.....|+|-|..|||||||++.|...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 34568999999999999999999764
No 484
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=86.88 E-value=0.36 Score=50.91 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
++-+++|.|..|||||||++.|+..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 5779999999999999999999875
No 485
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=86.68 E-value=0.35 Score=51.35 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 224 FCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 224 IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
|.|.|+.|+||||+++.|+.. ++
T Consensus 67 vLL~GppGtGKTtLaraIa~~-~~ 89 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGE-AR 89 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHH-TT
T ss_pred EEEECCCCCCHHHHHHHHHHH-hC
Confidence 899999999999999999986 55
No 486
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=86.66 E-value=0.27 Score=44.59 Aligned_cols=27 Identities=30% Similarity=0.620 Sum_probs=22.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHH-HHH
Q 012135 217 APKKRITFCVEGNISVGKTTFLQR-IAN 243 (470)
Q Consensus 217 ~~~K~~~IvIEG~dGSGKSTLaKl-LAk 243 (470)
...+.+-|+|-|..|||||||++. +..
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHH
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcC
Confidence 345667899999999999999998 444
No 487
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=86.57 E-value=0.36 Score=48.70 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 012135 223 TFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 223 ~IvIEG~dGSGKSTLaKlLAk 243 (470)
+.+|.|+.||||||+.+.|.-
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999874
No 488
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=86.57 E-value=0.16 Score=57.81 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=27.0
Q ss_pred hhhhhhhhhccCCCCCCCCCCCCcEEEEEcCCCCcHHHHH
Q 012135 199 IKDSVDEELKDSNSDDKPAPKKRITFCVEGNISVGKTTFL 238 (470)
Q Consensus 199 i~~~~~~~~~~~~~~~~~~~~K~~~IvIEG~dGSGKSTLa 238 (470)
|+-+...+||.+|-+ --+..+++|+|..|||||||+
T Consensus 6 i~gar~hNLkni~~~----ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 6 VKGARVHNLKNITVR----IPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp EESBCSTTCCSBCCE----EETTSEEEEEESTTSSSHHHH
T ss_pred EeCccccccCcceec----cCCCcEEEEECCCCCcHHHHH
Confidence 344455677666542 236789999999999999999
No 489
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=86.26 E-value=0.37 Score=51.76 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhhc
Q 012135 222 ITFCVEGNISVGKTTFLQRIANETLE 247 (470)
Q Consensus 222 ~~IvIEG~dGSGKSTLaKlLAk~~L~ 247 (470)
..+.|.|+.|+||||+++.|+.. +.
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~-l~ 85 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAEL-LP 85 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHT-SC
T ss_pred CEEEEEeCCCCCHHHHHHHHhcc-CC
Confidence 47899999999999999999986 43
No 490
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=86.25 E-value=0.63 Score=38.68 Aligned_cols=63 Identities=16% Similarity=0.319 Sum_probs=46.5
Q ss_pred CCCCCCCCeeeccCCCcchHHHHHhhccchHHHHHHHHHHHHH---HhhHHHHHhhhcccccccccchhhh
Q 012135 128 PGLVGNPDLLTIPGVGPRNLRKLVDNGIGDVAELKQLYKDKFW---EASQKMIEYLQSSVGIIHKNHAESI 195 (470)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~ 195 (470)
+.|+|+-++--+|||||.--++|+++||..--+|- -+|. |-.+...+.|+...|. +..||.+-
T Consensus 12 ~EPmgeK~V~evpGIG~~~~~~L~~~Gf~kAy~lL----GqFL~l~kd~~~F~~WLk~~~ga-n~kq~~dc 77 (89)
T 1ci4_A 12 AEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVL----GQFLVLKKDEDLFREWLKDTCGA-NAKQSRDC 77 (89)
T ss_dssp TSCCTTCCGGGSTTCCHHHHHHHHHTTCCSHHHHH----HHHHHTTTCHHHHHHHHHHHHCC-CHHHHHHH
T ss_pred hCCCCCCCcccCCCcCHHHHHHHHHcCccHHHHHH----HHHHHcCCCHHHHHHHHHHHhCc-CHHHHHHH
Confidence 34589999999999999999999999999966654 2332 3345557888888785 44555544
No 491
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=86.24 E-value=0.44 Score=46.94 Aligned_cols=27 Identities=30% Similarity=0.349 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 218 PKKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 218 ~~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
..++-+|.|.|.+|+|||||+..++..
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999865
No 492
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=86.23 E-value=0.41 Score=43.61 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
...-|+|-|..|+|||||++.|...
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3467999999999999999999864
No 493
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=86.10 E-value=0.4 Score=53.78 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.++.+++|.|+.|+||||+++.++--
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 46789999999999999999999853
No 494
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=85.99 E-value=0.38 Score=45.97 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHH
Q 012135 221 RITFCVEGNISVGKTTFLQRIA 242 (470)
Q Consensus 221 ~~~IvIEG~dGSGKSTLaKlLA 242 (470)
...|+|-|..|+|||||++.|.
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHh
Confidence 4679999999999999999874
No 495
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=85.94 E-value=0.37 Score=47.28 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+..+|+|-|.+|+|||||++.|...
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44567999999999999999999754
No 496
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=85.89 E-value=0.18 Score=45.43 Aligned_cols=25 Identities=32% Similarity=0.670 Sum_probs=21.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIAN 243 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk 243 (470)
.+.+-|+|-|..|||||||++.|..
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred cCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999998874
No 497
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=85.89 E-value=0.45 Score=45.29 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 219 KKRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 219 ~K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
.+...|+|-|..|+|||||++.|...
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999999853
No 498
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=85.79 E-value=0.22 Score=39.32 Aligned_cols=38 Identities=26% Similarity=0.341 Sum_probs=31.7
Q ss_pred CCCCeeeccCCCcchHHHHHhhccchHHHHHHHHHHHH
Q 012135 132 GNPDLLTIPGVGPRNLRKLVDNGIGDVAELKQLYKDKF 169 (470)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (470)
-..||+.+|||||.-..||.++||.++.+|-.+=.|.+
T Consensus 5 ~~~~l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL 42 (70)
T 1wcn_A 5 PADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDL 42 (70)
T ss_dssp CCHHHHSSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHH
T ss_pred hhhHHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHH
Confidence 34579999999999999999999999999876644443
No 499
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=85.70 E-value=0.27 Score=53.48 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHH
Q 012135 220 KRITFCVEGNISVGKTTFLQRI 241 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlL 241 (470)
++-+++|-|+.|||||||++.|
T Consensus 347 ~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 347 LGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp TTSEEEEECSTTSSHHHHHTTT
T ss_pred CCCEEEEEeeCCCCHHHHHHHH
Confidence 5789999999999999999754
No 500
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=85.58 E-value=0.42 Score=56.30 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 012135 220 KRITFCVEGNISVGKTTFLQRIANE 244 (470)
Q Consensus 220 K~~~IvIEG~dGSGKSTLaKlLAk~ 244 (470)
+|.+++|-|..||||||++++|...
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred CCcEEEEEecCCCcHHHHHHHhccc
Confidence 5789999999999999999999864
Done!