BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012136
(470 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TIC|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1TIC|B Chain B, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1LGY|A Chain A, Lipase Ii From Rhizopus Niveus
pdb|1LGY|B Chain B, Lipase Ii From Rhizopus Niveus
pdb|1LGY|C Chain C, Lipase Ii From Rhizopus Niveus
Length = 269
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 89/189 (47%), Gaps = 32/189 (16%)
Query: 185 TQAFVLKENRKDDHDRIVVSFRGTETFDADSWCSDFDLSWYEIDGMGKIHGGFMKALGLQ 244
T +VL R D I + FRGT +F + F+ S Y+ K+H GF+ +
Sbjct: 63 TNGYVL---RSDKQKTIYLVFRGTNSFRSAITDIVFNFSDYKPVKGAKVHAGFLSSY--- 116
Query: 245 KCKGWPKELNKQDKRPAPLAYYAIRDMLRELLSKNDRAKYIVTGHSLGGALAILFPAVLA 304
E D P +++E L+ + K IVTGHSLGGA A+L A +
Sbjct: 117 -------EQVVNDYFP----------VVQEQLTAHPTYKVIVTGHSLGGAQALL--AGMD 157
Query: 305 LHE-ETFLLERLEGVYTFGQPRVGDEKFAEFMQKKLKDHGVEYIRFVYCNDIVPRLPFDD 363
L++ E L + ++T G PRVG+ FA +++ G+ + R V+ DIVP +P
Sbjct: 158 LYQREPRLSPKNLSIFTVGGPRVGNPTFAYYVEST----GIPFQRTVHKRDIVPHVP--P 211
Query: 364 SDFMFKHFG 372
F F H G
Sbjct: 212 QSFGFLHPG 220
>pdb|3TGL|A Chain A, Structure And Molecular Model Refinement Of Rhizomucor
Miehei Triacylglyceride Lipase: A Case Study Of The Use
Of Simulated Annealing In Partial Model Refinement
Length = 269
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 81/183 (44%), Gaps = 33/183 (18%)
Query: 194 RKDDHDRIVVSFRGTETFDADSWCSDFD---LSWYEIDGMGKIHGGFMKALGLQKCKGWP 250
R D I + FRG+ + +W +D +S+ + G K+H GF+ + G + +
Sbjct: 68 RGDSEKTIYIVFRGSSSIR--NWIADLTFVPVSYPPVSGT-KVHKGFLDSYGEVQNELVA 124
Query: 251 KELNKQDKRPAPLAYYAIRDMLRELLSKNDRAKYIVTGHSLGGALAILFPAVLALHEETF 310
L++ + P+ K VTGHSLGGA +L L EE
Sbjct: 125 TVLDQFKQYPS--------------------YKVAVTGHSLGGATVLLCALDLYQREEGL 164
Query: 311 LLERLEGVYTFGQPRVGDEKFAEFMQKKLKDHGVEYIRFVYCNDIVPRLPFDDSDFMFKH 370
L +YT GQPRVGD FA ++ G+ Y R V DIVP LP + F F H
Sbjct: 165 SSSNLF-LYTQGQPRVGDPAFANYVVST----GIPYRRTVNERDIVPHLP--PAAFGFLH 217
Query: 371 FGK 373
G+
Sbjct: 218 AGE 220
>pdb|1TGL|A Chain A, A Serine Protease Triad Forms The Catalytic Centre Of A
Triacylglycerol Lipase
Length = 269
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 82/183 (44%), Gaps = 33/183 (18%)
Query: 194 RKDDHDRIVVSFRGTETFDADSWCSDFD---LSWYEIDGMGKIHGGFMKALGLQKCKGWP 250
R D I + FRG+ + +W +D +S+ + G K+H GF+ + G
Sbjct: 68 RGDSEKTIYIVFRGSSSIR--NWIADLTFVPVSYPPVSGT-KVHKGFLDSYG-------- 116
Query: 251 KELNKQDKRPAPLAYYAIRDMLRELLSKNDRAKYIVTGHSLGGALAILFPAVLALHEETF 310
Q++ A + D ++ S K VTGHSLGGA A+L L EE
Sbjct: 117 ---EVQNELVA-----TVLDQFKQYPSY----KVAVTGHSLGGATALLCALDLYQREEGL 164
Query: 311 LLERLEGVYTFGQPRVGDEKFAEFMQKKLKDHGVEYIRFVYCNDIVPRLPFDDSDFMFKH 370
L +YT GQPRVG+ FA ++ G+ Y R V DIVP LP + F F H
Sbjct: 165 SSSNLF-LYTQGQPRVGNPAFANYVVST----GIPYRRTVNERDIVPHLP--PAAFGFLH 217
Query: 371 FGK 373
G
Sbjct: 218 AGS 220
>pdb|4TGL|A Chain A, Catalysis At The Interface: The Anatomy Of A
Conformational Change In A Triglyceride Lipase
Length = 269
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 82/183 (44%), Gaps = 33/183 (18%)
Query: 194 RKDDHDRIVVSFRGTETFDADSWCSDFD---LSWYEIDGMGKIHGGFMKALGLQKCKGWP 250
R D I + FRG+ + +W +D +S+ + G K+H GF+ + G
Sbjct: 68 RGDSEKTIYIVFRGSSSIR--NWIADLTFVPVSYPPVSGT-KVHKGFLDSYG-------- 116
Query: 251 KELNKQDKRPAPLAYYAIRDMLRELLSKNDRAKYIVTGHSLGGALAILFPAVLALHEETF 310
Q++ A + D ++ S K VTGHSLGGA A+L L EE
Sbjct: 117 ---EVQNELVA-----TVLDQFKQYPSY----KVAVTGHSLGGATALLCALDLYQREEGL 164
Query: 311 LLERLEGVYTFGQPRVGDEKFAEFMQKKLKDHGVEYIRFVYCNDIVPRLPFDDSDFMFKH 370
L +YT GQPRVG+ FA ++ G+ Y R V DIVP LP + F F H
Sbjct: 165 SSSNLF-LYTQGQPRVGNPAFANYVVST----GIPYRRTVNERDIVPHLP--PAAFGFLH 217
Query: 371 FGK 373
G
Sbjct: 218 AGS 220
>pdb|5TGL|A Chain A, A Model For Interfacial Activation In Lipases From The
Structure Of A Fungal Lipase-Inhibitor Complex
Length = 269
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 81/183 (44%), Gaps = 33/183 (18%)
Query: 194 RKDDHDRIVVSFRGTETFDADSWCSDFD---LSWYEIDGMGKIHGGFMKALGLQKCKGWP 250
R D I + FRG+ + +W +D +S+ + G K+H GF+ + G + +
Sbjct: 68 RGDSEKTIYIVFRGSSSIR--NWIADLTFVPVSYPPVSGT-KVHKGFLDSYGEVQNELVA 124
Query: 251 KELNKQDKRPAPLAYYAIRDMLRELLSKNDRAKYIVTGHSLGGALAILFPAVLALHEETF 310
L++ + P+ K VTGHSLGGA A+L L EE
Sbjct: 125 TVLDQFKQYPS--------------------YKVAVTGHSLGGATALLCALDLYQREEGL 164
Query: 311 LLERLEGVYTFGQPRVGDEKFAEFMQKKLKDHGVEYIRFVYCNDIVPRLPFDDSDFMFKH 370
L +YT GQPRVG+ FA ++ G+ Y R V DIVP LP + F F H
Sbjct: 165 SSSNLF-LYTQGQPRVGNPAFANYVVST----GIPYRRTVNERDIVPHLP--PAAFGFLH 217
Query: 371 FGK 373
G
Sbjct: 218 AGS 220
>pdb|1USW|A Chain A, Crystal Structure Of Ferulic Acid Esterase From
Aspergillus Niger
Length = 260
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 80/196 (40%), Gaps = 56/196 (28%)
Query: 194 RKDDHDRIVVSFRGTET--------------FDADSWCSDFDLSWYEIDGMGKIHGGFMK 239
R D I+ FRGT + FD C+D ++HGG+
Sbjct: 54 RDDTSKEIITVFRGTGSDTNLQLDTNYTLTPFDTLPQCNDC-----------EVHGGYYI 102
Query: 240 ALGLQKCKGWPKELNKQDKRPAPLAYYAIRDMLRELLSKNDRAKYIVTGHSLGGALAILF 299
GW ++ QD+ + ++++ S+ VTGHSLG ++A L
Sbjct: 103 --------GW---ISVQDQ---------VESLVKQQASQYPDYALTVTGHSLGASMAALT 142
Query: 300 PAVLALHEETFLLERLEGVYTFGQPRVGDEKFAEFMQKKLK---DHGVEYIRFVYCNDIV 356
A L+ + L YTFG+PR G++ FA +M + +Y R + ND +
Sbjct: 143 AAQLSATYDNVRL------YTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGI 196
Query: 357 PRLPFDDSDFMFKHFG 372
P LP +D + H G
Sbjct: 197 PNLP--PADEGYAHGG 210
>pdb|2HL6|A Chain A, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2HL6|B Chain B, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2IX9|A Chain A, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
pdb|2IX9|B Chain B, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
Length = 260
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 54/184 (29%)
Query: 194 RKDDHDRIVVSFRGTET--------------FDADSWCSDFDLSWYEIDGMGKIHGGFMK 239
R D I+ FRGT + FD C+D + +HGG+
Sbjct: 54 RDDTSKEIITVFRGTGSDTNLQLDTNYTLTPFDTLPQCNDCE-----------VHGGYYI 102
Query: 240 ALGLQKCKGWPKELNKQDKRPAPLAYYAIRDMLRELLSKNDRAKYIVTGHSLGGALAILF 299
GW ++ QD+ + ++++ S+ VTGHSLG ++A L
Sbjct: 103 --------GW---ISVQDQ---------VESLVKQQASQYPDYALTVTGHSLGASMAALT 142
Query: 300 PAVLALHEETFLLERLEGVYTFGQPRVGDEKFAEFMQKKLK---DHGVEYIRFVYCNDIV 356
A L+ + L YTFG+PR G++ FA +M + +Y R + ND +
Sbjct: 143 AAQLSATYDNVRL------YTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGI 196
Query: 357 PRLP 360
P LP
Sbjct: 197 PNLP 200
>pdb|1UWC|A Chain A, Feruloyl Esterase From Aspergillus Niger
pdb|1UWC|B Chain B, Feruloyl Esterase From Aspergillus Niger
pdb|1UZA|A Chain A, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
pdb|1UZA|B Chain B, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
Length = 261
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 54/184 (29%)
Query: 194 RKDDHDRIVVSFRGTET--------------FDADSWCSDFDLSWYEIDGMGKIHGGFMK 239
R D I+ FRGT + FD C+D + +HGG+
Sbjct: 54 RDDTSKEIITVFRGTGSDTNLQLDTNYTLTPFDTLPQCNDCE-----------VHGGYYI 102
Query: 240 ALGLQKCKGWPKELNKQDKRPAPLAYYAIRDMLRELLSKNDRAKYIVTGHSLGGALAILF 299
GW ++ QD+ + ++++ S+ VTGHSLG ++A L
Sbjct: 103 --------GW---ISVQDQ---------VESLVKQQASQYPDYALTVTGHSLGASMAALT 142
Query: 300 PAVLALHEETFLLERLEGVYTFGQPRVGDEKFAEFMQKKLK---DHGVEYIRFVYCNDIV 356
A L+ + L YTFG+PR G++ FA +M + +Y R + ND +
Sbjct: 143 AAQLSATYDNVRL------YTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGI 196
Query: 357 PRLP 360
P LP
Sbjct: 197 PNLP 200
>pdb|2BJH|A Chain A, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
pdb|2BJH|B Chain B, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
pdb|2BJH|C Chain C, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
Length = 260
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 80/196 (40%), Gaps = 56/196 (28%)
Query: 194 RKDDHDRIVVSFRGTET--------------FDADSWCSDFDLSWYEIDGMGKIHGGFMK 239
R D I+ FRGT + FD C+D ++HGG+
Sbjct: 54 RDDTSKEIITVFRGTGSDTNLQLDTNYTLTPFDTLPQCNDC-----------EVHGGYYI 102
Query: 240 ALGLQKCKGWPKELNKQDKRPAPLAYYAIRDMLRELLSKNDRAKYIVTGHSLGGALAILF 299
GW ++ QD+ + ++++ S+ VTGH+LG ++A L
Sbjct: 103 --------GW---ISVQDQ---------VESLVKQQASQYPDYALTVTGHALGASMAALT 142
Query: 300 PAVLALHEETFLLERLEGVYTFGQPRVGDEKFAEFMQKKLK---DHGVEYIRFVYCNDIV 356
A L+ + L YTFG+PR G++ FA +M + +Y R + ND +
Sbjct: 143 AAQLSATYDNVRL------YTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGI 196
Query: 357 PRLPFDDSDFMFKHFG 372
P LP +D + H G
Sbjct: 197 PNLP--PADEGYAHGG 210
>pdb|1DT3|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT3|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|E Chain E, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|F Chain F, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|G Chain G, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|H Chain H, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DU4|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1EIN|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1TIB|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|4DYH|A Chain A, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4DYH|B Chain B, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4EA6|A Chain A, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4EA6|B Chain B, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4FLF|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4FLF|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4GBG|A Chain A, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GBG|B Chain B, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GI1|A Chain A, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GI1|B Chain B, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GLB|A Chain A, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GLB|B Chain B, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GWL|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GWL|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GHW|A Chain A, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
pdb|4GHW|B Chain B, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
Length = 269
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 38/174 (21%)
Query: 201 IVVSFRGTETFDADSWCSDFDLSWYEIDGMGKIHGGFMKALGLQKCKGWPKELNKQDKRP 260
IV+SFRG+ + + +W + + EI+ + C+G D
Sbjct: 76 IVLSFRGSRSIE--NWIGNLNFDLKEINDI------------CSGCRG-------HDGFT 114
Query: 261 APLAYYAIRDMLRELLSKNDRA----KYIVTGHSLGGALAILFPAVLALHEETFLLERLE 316
+ ++ ++ D LR+ + R + + TGHSLGGALA + A L + ++
Sbjct: 115 S--SWRSVADTLRQKVEDAVREHPDYRVVFTGHSLGGALATV--AGADLRGNGYDID--- 167
Query: 317 GVYTFGQPRVGDEKFAEFMQKKLKDHGVEYIRFVYCNDIVPRLPFDDSDFMFKH 370
V+++G PRVG+ FAEF+ ++ G Y R + NDIVPRLP +F + H
Sbjct: 168 -VFSYGAPRVGNRAFAEFL--TVQTGGTLY-RITHTNDIVPRLP--PREFGYSH 215
>pdb|1GT6|A Chain A, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
pdb|1GT6|B Chain B, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
Length = 269
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 38/174 (21%)
Query: 201 IVVSFRGTETFDADSWCSDFDLSWYEIDGMGKIHGGFMKALGLQKCKGWPKELNKQDKRP 260
IV+SFRG+ + + +W + + EI+ + C+G D
Sbjct: 76 IVLSFRGSRSIE--NWIGNLNFDLKEINDI------------CSGCRG-------HDGFT 114
Query: 261 APLAYYAIRDMLRELLSKNDRA----KYIVTGHSLGGALAILFPAVLALHEETFLLERLE 316
+ ++ ++ D LR+ + R + + TGH+LGGALA + A L + ++
Sbjct: 115 S--SWRSVADTLRQKVEDAVREHPDYRVVFTGHALGGALATV--AGADLRGNGYDID--- 167
Query: 317 GVYTFGQPRVGDEKFAEFMQKKLKDHGVEYIRFVYCNDIVPRLPFDDSDFMFKH 370
V+++G PRVG+ FAEF+ ++ G Y R + NDIVPRLP +F + H
Sbjct: 168 -VFSYGAPRVGNRAFAEFL--TVQTGGTLY-RITHTNDIVPRLP--PREFGYSH 215
>pdb|1TIA|A Chain A, An Unusual Buried Polar Cluster In A Family Of Fungal
Lipases
Length = 279
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)
Query: 272 LRELLSKNDRAKYIVTGHSLGGALAILFPAVLALHEETFLLERLEGVYTFGQPRVGDEKF 331
L+E++++N + +V GHSLG A+A L A L + + +L Y + PRVG+
Sbjct: 127 LKEVVAQNPNYELVVVGHSLGAAVATL--AATDLRGKGYPSAKL---YAYASPRVGNAAL 181
Query: 332 AEFMQKKLKDHGVEYIRFVYCNDIVPRLPF 361
A+++ + + RF + ND VP+LP
Sbjct: 182 AKYITAQGNN-----FRFTHTNDPVPKLPL 206
>pdb|3NGM|A Chain A, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|B Chain B, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|C Chain C, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|D Chain D, Crystal Structure Of Lipase From Gibberella Zeae
Length = 319
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 70/166 (42%), Gaps = 42/166 (25%)
Query: 201 IVVSFRGTETFDADSWCS--DFDLSWYEIDGMGKIHGGFMKALGLQKCKGWPKELNKQDK 258
IVVSFRG+ + +W + DFD + +H GF A W E++
Sbjct: 75 IVVSFRGS--INIRNWLTNLDFDQDDCSLTSGCGVHSGFQNA--------W-NEISAAAT 123
Query: 259 RPAPLAYYAIRDMLRELLSKNDRAKYIVTGHSLGGALAILFPAVLALHEETFLLERLEG- 317
+ + N K + GHSLGGA+A L A L R+ G
Sbjct: 124 A-----------AVAKARKANPSFKVVSVGHSLGGAVATLAGANL----------RIGGT 162
Query: 318 ---VYTFGQPRVGDEKFAEFMQKKLKDHGVEYIRFVYCNDIVPRLP 360
+YT+G PRVG+ + A F+ + G E+ R D VPRLP
Sbjct: 163 PLDIYTYGSPRVGNTQLAAFVSNQA---GGEF-RVTNAKDPVPRLP 204
>pdb|3O0D|A Chain A, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|B Chain B, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|C Chain C, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|D Chain D, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|E Chain E, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|F Chain F, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|G Chain G, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
Length = 301
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 23/127 (18%)
Query: 264 AYYAIRDMLRELLSKNDRAKYIVTGHSLGGALAILFPAVLALHEETFLLERLEGVYTFGQ 323
Y I L ++ + + VTGHSLGGA A+LF L ++ L V T GQ
Sbjct: 136 TYNQIGPKLDSVIEQYPDYQIAVTGHSLGGAAALLFGINLKVNGHDPL------VVTLGQ 189
Query: 324 PRVGDEKFAEFMQKKL------------KDHGVEYIRFVYCNDIVPRLPFDDSDFMFKHF 371
P VG+ FA ++ K KD + R + DIVP++PF D ++H
Sbjct: 190 PIVGNAGFANWVDKLFFGQENPDVSKVSKDR--KLYRITHRGDIVPQVPFWDG---YQHC 244
Query: 372 GKCLYFD 378
++ D
Sbjct: 245 SGEVFID 251
>pdb|2YIJ|A Chain A, Crystal Structure Of Phospholipase A1
pdb|2YIJ|B Chain B, Crystal Structure Of Phospholipase A1
Length = 419
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 102/257 (39%), Gaps = 43/257 (16%)
Query: 201 IVVSFRGTETFDADSWCSDFDLSWYEIDGMGKIHGGFMKALGLQKCKGWPKELNKQDKRP 260
IVVS+RG+ W DF+ + + KI G + +Q +GW QD+R
Sbjct: 149 IVVSWRGS--VQPLEWVEDFE---FGLVNAIKIFG--ERNDQVQIHQGWYSIYXSQDER- 200
Query: 261 APLAYYAIRD-MLRELLS-----KNDRAKYIVTGHSLGGALAILFPAVLALHEETFLLER 314
+P RD +LRE+ K++ + GHSLG ALA L + + R
Sbjct: 201 SPFTKTNARDQVLREVGRLLEKYKDEEVSITICGHSLGAALATLSATDIVANGYNRPKSR 260
Query: 315 LE-----GVYTFGQPRVGDEKFAEFMQKKLKDHGVEYIRFVYCNDIVPRLPFDDSDFMFK 369
+ + F PRVGD F + G+E IR + ++ +P ++
Sbjct: 261 PDKSCPVTAFVFASPRVGDSDFRKLFS------GLEDIRVLRTRNLPDVIP------IYP 308
Query: 370 HFGKCLYFDRFYEGKVVSEEPNKNYFSQFLATPMRINAIMELIRSF--TLPWTKGPDYRE 427
G D F P S + +P + A + + + T+G + +
Sbjct: 309 PIGYSEVGDEF---------PIDTRKSPYXKSPGNL-ATFHCLEGYLHGVAGTQGTNKAD 358
Query: 428 TWLLRIQRVIGLVTPGI 444
+ L ++R IGLV +
Sbjct: 359 LFRLDVERAIGLVNKSV 375
>pdb|3UUF|A Chain A, Crystal Structure Of Mono- And Diacylglycerol Lipase From
Malassezia Globosa
Length = 278
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 283 KYIVTGHSLGGALAILFPAVLALHEETFLLERLEGVYTFGQPRVGDEKFAEFMQKKLKDH 342
+ V GHSLG A+ +L A+ E + L Y FG PR+G+ FA F+ +K+ D
Sbjct: 138 RVTVIGHSLGAAMGLL----CAMDIELRMDGGLYKTYLFGLPRLGNPTFASFVDQKIGD- 192
Query: 343 GVEYIRFVYCNDIVPRLP 360
++ + D VP +P
Sbjct: 193 --KFHSIINGRDWVPTVP 208
>pdb|3UUE|A Chain A, Crystal Structure Of Mono- And Diacylglycerol Lipase From
Malassezia Globosa
Length = 279
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 283 KYIVTGHSLGGALAILFPAVLALHEETFLLERLEGVYTFGQPRVGDEKFAEFMQKKLKDH 342
+ V GHSLG A+ +L A+ E + L Y FG PR+G+ FA F+ +K+ D
Sbjct: 139 RVTVIGHSLGAAMGLL----CAMDIELRMDGGLYKTYLFGLPRLGNPTFASFVDQKIGD- 193
Query: 343 GVEYIRFVYCNDIVPRLP 360
++ + D VP +P
Sbjct: 194 --KFHSIINGRDWVPTVP 209
>pdb|2ORY|A Chain A, Crystal Structure Of M37 Lipase
pdb|2ORY|B Chain B, Crystal Structure Of M37 Lipase
Length = 346
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 67/173 (38%), Gaps = 18/173 (10%)
Query: 193 NRKDDHDRIVVSFRGTETFDADSWC-SDFDLSWYEIDGMGKIHGGFMK-----ALGLQKC 246
+K V++ RGT W +DF +S + + G +K + GL
Sbjct: 77 QKKGAEGEYVIAIRGTNPVSISDWLFNDFMVSAMKKWPYASVEGRILKISESTSYGL--- 133
Query: 247 KGWPKELNK-QDKRPAPLAYYAIRDMLRELLSKNDRAKYIVTGHSLGGALAILFPAVLAL 305
K L K + K P I L E + +AK VTGHS GGAL+ L
Sbjct: 134 ----KTLQKLKPKSHIPGENKTILQFLNEKIGPEGKAKICVTGHSKGGALSSTLALWLKD 189
Query: 306 HEETFLLERLE-GVYTFGQPRVGDEKFAEFMQKKLKDHGVEYIRFVYCNDIVP 357
+ L + ++ F P G+ FA++ L D + R DIVP
Sbjct: 190 IQGVKLSQNIDISTIPFAGPTAGNADFADYFDDCLGD---QCTRIANSLDIVP 239
>pdb|3TJ1|A Chain A, Crystal Structure Of Rna Polymerase I Transcription
Initiation Factor Rrn3
pdb|3TJ1|B Chain B, Crystal Structure Of Rna Polymerase I Transcription
Initiation Factor Rrn3
Length = 649
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 52 RWIMFISVVLQKCLQFVAKPMSKYGSALEFFLNLVPSNGGFVELLL 97
+W +S++L C K + L++FL ++PS+ GF++ L
Sbjct: 171 KWWQDVSMILVSCFILPIKQTVCHHDMLKYFLRMIPSSMGFIDTYL 216
>pdb|3K89|A Chain A, Structure Of X. Oryzae Pv. Oryzae Kacc10331, Xoo0880(Fabd)
Complexed With Glycerol
pdb|3R97|A Chain A, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Fabd), Xoo0880, From Xanthomonas Oryzae
Pv. Oryzae Kacc10331
Length = 314
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 247 KGWPKELNKQDKRPAPLAYYAIRDMLRELLSKNDRAKYIVTGHSLGGALAILFPAVLALH 306
+G P+E+ + + P A + R ++ + ++ GHSLG A++ VL+LH
Sbjct: 51 QGGPEEMLNRTEYTQPALLAAGVAVWRLWTAQRGQRPALLAGHSLGEYTALVAAGVLSLH 110
Query: 307 EETFLLERLEGVYTFGQPRVGDEKFAEFM 335
+ L+ RL G + G A +
Sbjct: 111 DGAHLV-RLRGQFMQAAAPAGVGAMAAVL 138
>pdb|1AX4|A Chain A, Tryptophanase From Proteus Vulgaris
pdb|1AX4|B Chain B, Tryptophanase From Proteus Vulgaris
pdb|1AX4|C Chain C, Tryptophanase From Proteus Vulgaris
pdb|1AX4|D Chain D, Tryptophanase From Proteus Vulgaris
Length = 467
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 265 YYAIRDMLRELLSKNDRAKYIVTGHSLGGALAILFPAVL 303
YY ++D +EL + + YI+ H GA ILFP +L
Sbjct: 78 YYDLKDKAKELFNYD----YIIPAHQGRGAENILFPVLL 112
>pdb|2ZYL|A Chain A, Crystal Structure Of 3-Ketosteroid-9-Alpha-Hydroxylase
(Ksha) From M. Tuberculosis
Length = 386
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 352 CNDIVPRLPFDDSDFMFKHFGKCLYFDRFYEGKVVSE 388
C DI+ + D + F + HFG YF +EG + S+
Sbjct: 169 CRDIIDNVT-DMAHFFYIHFGLPTYFKNVFEGHIASQ 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,659,487
Number of Sequences: 62578
Number of extensions: 636688
Number of successful extensions: 1252
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1205
Number of HSP's gapped (non-prelim): 25
length of query: 470
length of database: 14,973,337
effective HSP length: 102
effective length of query: 368
effective length of database: 8,590,381
effective search space: 3161260208
effective search space used: 3161260208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)