BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012137
(470 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HZ5|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|B Chain B, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|C Chain C, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|D Chain D, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|E Chain E, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|F Chain F, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|G Chain G, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|H Chain H, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|J Chain J, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
Length = 216
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 88 SLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALV 147
LE R P ++ +T + + E++DNAVDE +G + V I KDNS +
Sbjct: 2 GLEAVRKRPG-MYIGSTDSRGLHHLVYEIVDNAVDEALSG--YGNEINVTIQKDNS--IC 56
Query: 148 FIDDGGGMDPESLRK----CMSLGYSTKKANKTIGQYGNGFKTS 187
D G GM P + + + ++ A GQ G+KTS
Sbjct: 57 VADSGRGM-PTGMHASGIPTVEVIFTVLHAGGKFGQ--GGYKTS 97
>pdb|3LMI|A Chain A, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
pdb|3LMI|B Chain B, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
pdb|3LMI|C Chain C, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
pdb|3LMI|D Chain D, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
Length = 307
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 263 SPFASKSELLQQFEDIGPHGTKVII--YNLWMNDEGVYELSFDDDEEDICLRDEANSGSL 320
SP + +E + Q ++ GTK ++ Y + EL F+D + + RD N +
Sbjct: 90 SPISKNNEAMTQLKN----GTKFVLKLYKKEAEQQASRELYFEDVKMQMVCRDWGNKFNQ 145
Query: 321 KKLPKKV 327
KK PKK+
Sbjct: 146 KKPPKKI 152
>pdb|3LMH|A Chain A, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Adp
pdb|3LMH|B Chain B, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Adp
Length = 307
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 263 SPFASKSELLQQFEDIGPHGTKVII--YNLWMNDEGVYELSFDDDEEDICLRDEANSGSL 320
SP + +E + Q ++ GTK ++ Y + EL F+D + + RD N +
Sbjct: 90 SPISKNNEAMTQLKN----GTKFVLKLYKKEAEQQASRELYFEDVKMQMVCRDWGNKFNQ 145
Query: 321 KKLPKKV 327
KK PKK+
Sbjct: 146 KKPPKKI 152
>pdb|3PDT|A Chain A, Crystal Structure Of The C-Terminal Truncated Alpha-Kinase
Domain Of Myosin Heavy Chain Kinase
Length = 275
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 263 SPFASKSELLQQFEDIGPHGTKVII--YNLWMNDEGVYELSFDDDEEDICLRDEANSGSL 320
SP + +E + Q ++ GTK ++ Y + EL F+D + + RD N +
Sbjct: 90 SPISKNNEAMTQLKN----GTKFVLKLYKKEAEQQASRELYFEDVKMQMVCRDWGNKFNQ 145
Query: 321 KKLPKKV 327
KK PKK+
Sbjct: 146 KKPPKKI 152
>pdb|3LKM|A Chain A, 1.6 Angstrom Crystal Structure Of The Alpha-Kinase Domain
Of Myosin Heavy Chain Kinase A Complex With Amp
pdb|3LLA|A Chain A, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Amppcp
pdb|3LLA|B Chain B, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Amppcp
Length = 307
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 263 SPFASKSELLQQFEDIGPHGTKVII--YNLWMNDEGVYELSFDDDEEDICLRDEANSGSL 320
SP + +E + Q ++ GTK ++ Y + EL F+D + + RD N +
Sbjct: 90 SPISKNNEAMTQLKN----GTKFVLKLYKKEAEQQASRELYFEDVKMQMVCRDWGNKFNQ 145
Query: 321 KKLPKKV 327
KK PKK+
Sbjct: 146 KKPPKKI 152
>pdb|2I1A|A Chain A, A Retroviral Protease-Like Domain In The Eukaryotic
Protein Ddi1
pdb|2I1A|B Chain B, A Retroviral Protease-Like Domain In The Eukaryotic
Protein Ddi1
pdb|2I1A|C Chain C, A Retroviral Protease-Like Domain In The Eukaryotic
Protein Ddi1
pdb|2I1A|D Chain D, A Retroviral Protease-Like Domain In The Eukaryotic
Protein Ddi1
Length = 148
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 29/68 (42%)
Query: 112 AIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTK 171
AI E L NA++ T V + +NI +N P F+D G S R G S
Sbjct: 5 AIDEQLRNAIEYTPEMFTQVPMLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTGLSRM 64
Query: 172 KANKTIGQ 179
+ IG+
Sbjct: 65 IDKRFIGE 72
>pdb|2E0A|A Chain A, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4
In Complex With Amppnp
pdb|2E0A|B Chain B, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4
In Complex With Amppnp
pdb|2ZDX|A Chain A, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDX|B Chain B, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDY|A Chain A, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDY|B Chain B, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
Length = 394
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 9/138 (6%)
Query: 59 VNEAPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLD 118
V +A E Y ++ +K T V G +H ++ S+ H F +
Sbjct: 187 VQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHL--HHMLFELFKNAMR 244
Query: 119 NAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA----- 173
V+ +N + ++ + ++ + D GGG+ + + S YST
Sbjct: 245 ATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDN 304
Query: 174 --NKTIGQYGNGFKTSTM 189
N + +G G S +
Sbjct: 305 SRNAPLAGFGYGLPISRL 322
>pdb|4HXZ|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HXZ|B Chain B, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HY1|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HY1|B Chain B, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HYM|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HYM|B Chain B, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
Length = 390
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 113 IAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGM 155
I E++DN+VDEV G F + + +DNS + DDG GM
Sbjct: 35 IQEIIDNSVDEVLAG--FASKINITLYEDNSIEVA--DDGRGM 73
>pdb|2ZKJ|A Chain A, Crystal Structure Of Human Pdk4-Adp Complex
pdb|2ZKJ|B Chain B, Crystal Structure Of Human Pdk4-Adp Complex
pdb|3D2R|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Kinase Isoform
4 In Complex With Adp
pdb|3D2R|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Kinase Isoform
4 In Complex With Adp
Length = 394
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 9/138 (6%)
Query: 59 VNEAPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLD 118
V +A E Y ++ +K T V G +H ++ S+ H F +
Sbjct: 187 VQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHL--HHMLFELFKNAMR 244
Query: 119 NAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA----- 173
V+ +N + ++ + ++ + D GGG+ + + S YST
Sbjct: 245 ATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDN 304
Query: 174 --NKTIGQYGNGFKTSTM 189
N + +G G S +
Sbjct: 305 SRNAPLAGFGYGLPISRL 322
>pdb|4EM7|A Chain A, Crystal Structure Of A Topoisomerase Atp Inhibitor
pdb|4EMV|A Chain A, Crystal Structure Of A Topoisomerase Atp Inhibitor
Length = 226
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 13/78 (16%)
Query: 115 ELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKAN 174
E++DNAVDE +G DR+++ + +L D G GM P + ++G T +
Sbjct: 47 EIVDNAVDEALSGFG----DRIDVTINKDGSLTVQDHGRGM-PTGMH---AMGIPTVEVI 98
Query: 175 KTI----GQYG-NGFKTS 187
TI G++G G+KTS
Sbjct: 99 FTILHAGGKFGQGGYKTS 116
>pdb|4GEE|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4GFN|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic
pdb|4GGL|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HXW|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
Length = 215
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 88 SLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALV 147
LE R P ++ +TS + + E++DN++DE G F K +V I D+S +
Sbjct: 1 GLEAVRKRPG-MYIGSTSGEGLHHLVWEIVDNSIDEALAG--FAKSIQVIIEPDDS--IT 55
Query: 148 FIDDGGGM 155
IDDG G+
Sbjct: 56 VIDDGRGI 63
>pdb|2DPI|A Chain A, Ternary Complex Of Hpoli With Dna And Dctp
pdb|2DPJ|A Chain A, Structure Of Hpoli With Dna And Dttp
pdb|2FLN|A Chain A, Binary Complex Of Catalytic Core Of Human Dna Polymerase
Iota With Dna (Template A)
pdb|2FLP|A Chain A, Binary Complex Of The Catalytic Core Of Human Dna
Polymerase Iota With Dna (Template G)
pdb|2FLL|A Chain A, Ternary Complex Of Human Dna Polymerase Iota With Dna And
Dttp
pdb|3EPG|A Chain A, Structure Of Human Dna Polymerase Iota Complexed With
N2-Ethylguanine
pdb|3EPI|A Chain A, Structure Of Human Dna Polymerase Iota Complexed With
N2-Ethylguanine And Incoming Ttp
pdb|3G6V|A Chain A, Dna Synthesis Across An Abasic Lesion By Human Dna
Polymerase-Iota
pdb|3G6X|A Chain A, Ternary Complex Of Dna Polymerase Iota:dna:dgtp With An
Abasic Site At The Templating Position
pdb|3G6Y|A Chain A, Ternary Complex Of Dna Polymerase Iota:dna:dttp With An
Abasic Site At The Templating Position
pdb|3GV7|B Chain B, Human Dna Polymerase Iota In Complex With T Template Dna
And Incoming Dttp
pdb|3GV8|B Chain B, Human Dna Polymerase Iota In Complex With T Template Dna
And Incoming Dgtp
pdb|3NGD|A Chain A, Structural Basis For Proficient Incorporation Of Dttp
Opposite O6- Methylguanine By Human Dna Polymerase Iota
pdb|3OSN|A Chain A, Structural Basis For Proficient Incorporation Of Dttp
Opposite O6- Methylguanine By Human Dna Polymerase Iota
pdb|3Q8P|B Chain B, Human Dna Polymerase Iota Incorporating Dctp Opposite
8-Oxo-Guanine
pdb|3Q8Q|B Chain B, Human Dna Polymerase Iota Incorporating Datp Opposite
8-Oxo-Guanine
pdb|3Q8R|B Chain B, Human Dna Polymerase Iota Incorporating Dgtp Opposite
8-Oxo-Guanine
pdb|3Q8S|B Chain B, Human Dna Polymerase Iota Incorporating Dttp Opposite
8-Oxo-Guanine
pdb|4EBC|A Chain A, Conformationally Restrained
North-Methanocarba-2'-Deoxyadenosine Corrects The
Error-Prone Nature Of Human Dna Polymerase Iota
pdb|4EBD|A Chain A, Conformationally Restrained
North-Methanocarba-2'-Deoxyadenosine Corrects The
Error-Prone Nature Of Human Dna Polymerase Iota
pdb|4EBE|A Chain A, Conformationally Restrained
North-Methanocarba-2'-Deoxyadenosine Corrects The
Error-Prone Nature Of Human Dna Polymerase Iota
pdb|4FS1|A Chain A, Base Pairing Mechanism Of N2,3-Ethenoguanine With Dttp By
Human Polymerase Iota
pdb|4FS2|A Chain A, Base Pairing Mechanism Of N2,3-Ethenoguanine With Dctp By
Human Polymerase Iota
pdb|4EYH|B Chain B, Human Dna Polymerase Iota Incorporating Dctp Opposite N-
(deoxyguanosin-8-yl)-1-aminopyrene Lesion
pdb|4EYI|B Chain B, Human Dna Polymerase Iota Incorporating Datp Opposite N-
(deoxyguanosin-8-yl)-1-aminopyrene Lesion
Length = 420
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 132 KVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGN-----GFKT 186
++ +++ +DNSP ++ + +S +KC S + K + + N G K
Sbjct: 280 RIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNKIEELLASLLNRVCQDGRKP 339
Query: 187 STMRLGADVIVFSRATHESKSTQSIGLLSYTYLR-KTGQDDVIVPMIDF 234
T+RL + +S H + ++ + S+ + TG DV+ PM+D
Sbjct: 340 HTVRL--IIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDI 386
>pdb|2ALZ|A Chain A, Ternary Complex Of Hpoli With Dna And Dctp
pdb|3H4B|A Chain A, Ternary Complex Of Human Dna Polymerase Iota With Template
UT AND Incoming Datp
pdb|3H4D|A Chain A, Ternary Complex Of Human Dna Polymerase Iota With Template
UT AND Incoming Dgtp
Length = 390
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 132 KVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGN-----GFKT 186
++ +++ +DNSP ++ + +S +KC S + K + + N G K
Sbjct: 256 RIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNKIEELLASLLNRVCQDGRKP 315
Query: 187 STMRLGADVIVFSRATHESKSTQSIGLLSYTYLR-KTGQDDVIVPMIDF 234
T+RL + +S H + ++ + S+ + TG DV+ PM+D
Sbjct: 316 HTVRL--IIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDI 362
>pdb|1T3N|A Chain A, Structure Of The Catalytic Core Of Dna Polymerase Iota In
Complex With Dna And Dttp
pdb|1T3N|B Chain B, Structure Of The Catalytic Core Of Dna Polymerase Iota In
Complex With Dna And Dttp
pdb|1ZET|A Chain A, X-Ray Data Do Not Support Hoogsteen Base-Pairing During
Replication By Human Polymerase Iota
Length = 388
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 132 KVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGN-----GFKT 186
++ +++ +DNSP ++ + +S +KC S + K + + N G K
Sbjct: 254 RIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNKIEELLASLLNRVCQDGRKP 313
Query: 187 STMRLGADVIVFSRATHESKSTQSIGLLSYTYLR-KTGQDDVIVPMIDF 234
T+RL + +S H + ++ + S+ + TG DV+ PM+D
Sbjct: 314 HTVRL--IIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDI 360
>pdb|3H40|A Chain A, Binary Complex Of Human Dna Polymerase Iota With Template
UT
Length = 389
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 132 KVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGN-----GFKT 186
++ +++ +DNSP ++ + +S +KC S + K + + N G K
Sbjct: 255 RIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNKIEELLASLLNRVCQDGRKP 314
Query: 187 STMRLGADVIVFSRATHESKSTQSIGLLSYTYLR-KTGQDDVIVPMIDF 234
T+RL + +S H + ++ + S+ + TG DV+ PM+D
Sbjct: 315 HTVRL--IIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDI 361
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,142,333
Number of Sequences: 62578
Number of extensions: 605806
Number of successful extensions: 1515
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1509
Number of HSP's gapped (non-prelim): 22
length of query: 470
length of database: 14,973,337
effective HSP length: 102
effective length of query: 368
effective length of database: 8,590,381
effective search space: 3161260208
effective search space used: 3161260208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)